-- dump date 20140619_080847 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_003034267.1 253771436 8156697 347..1750 1 NC_012947.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1750 dnaA 8156697 dnaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosomal replication initiation protein YP_003034267.1 347 D 866768 CDS YP_003034268.1 253771437 8157826 1755..2855 1 NC_012947.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2855 8157826 ECBD_0002 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunit beta YP_003034268.1 1755 D 866768 CDS YP_003034269.1 253771438 8157827 2855..3928 1 NC_012947.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3928 recF 8157827 recF Escherichia coli 'BL21-Gold(DE3)pLysS AG' recombination protein F YP_003034269.1 2855 D 866768 CDS YP_003034270.1 253771439 8157828 3957..6371 1 NC_012947.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 6371 gyrB 8157828 gyrB Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA gyrase subunit B YP_003034270.1 3957 D 866768 CDS YP_003034271.1 253771440 8157019 6611..7009 1 NC_012947.1 PFAM: protein of unknown function DUF937; KEGG: ssn:SSON_3648 hypothetical protein; hypothetical protein 7009 8157019 ECBD_0005 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034271.1 6611 D 866768 CDS YP_003034272.1 253771441 8160210 7124..7936 1 NC_012947.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase 7936 8160210 ECBD_0006 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar phosphatase YP_003034272.1 7124 D 866768 CDS YP_003034273.1 253771442 8160211 complement(7982..8638) 1 NC_012947.1 KEGG: sfl:SF3768 hypothetical protein; hypothetical protein 8638 8160211 ECBD_0007 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034273.1 7982 R 866768 CDS YP_003034274.1 253771443 8160212 8916..9605 1 NC_012947.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sfx:S4002 regulator protein for dgo operon; GntR family transcriptional regulator 9605 8160212 ECBD_0008 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GntR family transcriptional regulator YP_003034274.1 8916 D 866768 CDS YP_003034275.1 253771444 8160213 9602..10480 1 NC_012947.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ssn:SSON_3644 2-oxo-3-deoxygalactonate kinase; 2-dehydro-3-deoxygalactonokinase 10480 8160213 ECBD_0009 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-dehydro-3-deoxygalactonokinase YP_003034275.1 9602 D 866768 CDS YP_003034276.1 253771445 8160214 10464..11081 1 NC_012947.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 11081 8160214 ECBD_0010 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_003034276.1 10464 D 866768 CDS YP_003034277.1 253771446 8160215 11078..12226 1 NC_012947.1 PFAM: mandelate racemase/muconate lactonizing protein; galactonate dehydratase 12226 8160215 ECBD_0011 Escherichia coli 'BL21-Gold(DE3)pLysS AG' galactonate dehydratase YP_003034277.1 11078 D 866768 CDS YP_003034278.1 253771447 8160216 12346..13638 1 NC_012947.1 TIGRFAM: d-galactonate transporter; phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: ssn:SSON_3642 D-galactonate transport; d-galactonate transporter 13638 8160216 ECBD_0012 Escherichia coli 'BL21-Gold(DE3)pLysS AG' d-galactonate transporter YP_003034278.1 12346 D 866768 CDS YP_003034279.1 253771448 8160217 complement(13635..14699) 1 NC_012947.1 FAD/NAD(P)-binding domain; oxidoreductase 14699 8160217 ECBD_0013 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase YP_003034279.1 13635 R 866768 CDS YP_003034280.1 253771449 8160218 14800..16014 1 NC_012947.1 KEGG: ssn:SSON_3640 hypothetical protein; hypothetical protein 16014 8160218 ECBD_0014 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034280.1 14800 D 866768 CDS YP_003034281.1 253771450 8160219 complement(16016..16423) 1 NC_012947.1 PFAM: protein of unknown function DUF1375; KEGG: sfv:SFV_3823 hypothetical protein; hypothetical protein 16423 8160219 ECBD_0015 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034281.1 16016 R 866768 CDS YP_003034282.1 253771451 8160220 16654..17067 1 NC_012947.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 17067 8160220 ECBD_0016 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat shock protein IbpA YP_003034282.1 16654 D 866768 CDS YP_003034283.1 253771452 8160221 17179..17607 1 NC_012947.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB 17607 8160221 ECBD_0017 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat shock chaperone IbpB YP_003034283.1 17179 D 866768 CDS YP_003034284.1 253771453 8160222 17803..19464 1 NC_012947.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; TrkA-C domain protein; KEGG: sfx:S3992 hypothetical protein; hypothetical protein 19464 8160222 ECBD_0018 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034284.1 17803 D 866768 CDS YP_003034285.1 253771454 8160224 20394..22010 1 NC_012947.1 TIGRFAM: PTS system, alpha-glucoside-specific IIBC subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: ssn:SSON_3634 phosphotransferase system enzyme IIBC component; PTS system, alpha-glucoside-specific IIBC subunit 22010 8160224 ECBD_0020 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, alpha-glucoside-specific IIBC subunit YP_003034285.1 20394 D 866768 CDS YP_003034286.1 253771455 8160225 22010..23332 1 NC_012947.1 PFAM: glycoside hydrolase family 4; KEGG: sdy:SDY_4168 6-phospho-beta-glucosidase; glycoside hydrolase family 4 23332 8160225 ECBD_0021 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase family 4 YP_003034286.1 22010 D 866768 CDS YP_003034287.1 253771456 8160226 complement(23329..24222) 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; AraC family transcriptional regulator 24222 8160226 ECBD_0022 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003034287.1 23329 R 866768 CDS YP_003034288.1 253771457 8160227 24389..26104 1 NC_012947.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK 26104 8160227 ECBD_0023 Escherichia coli 'BL21-Gold(DE3)pLysS AG' symporter YidK YP_003034288.1 24389 D 866768 CDS YP_003034289.1 253771458 8160228 26101..27594 1 NC_012947.1 PFAM: sulfatase; sulfatase 27594 8160228 ECBD_0024 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfatase YP_003034289.1 26101 D 866768 CDS YP_003034290.1 253771459 8160229 complement(27641..28090) 1 NC_012947.1 KEGG: ssn:SSON_3631 hypothetical protein; hypothetical protein 28090 8160229 ECBD_0025 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034290.1 27641 R 866768 CDS YP_003034291.1 253771460 8160230 28199..28546 1 NC_012947.1 PFAM: protein of unknown function DUF202; KEGG: sdy:SDY_4160 hypothetical protein; hypothetical protein 28546 8160230 ECBD_0026 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034291.1 28199 D 866768 CDS YP_003034292.1 253771461 8160231 28536..28898 1 NC_012947.1 KEGG: sfv:SFV_3835 hypothetical protein; hypothetical protein 28898 8160231 ECBD_0027 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034292.1 28536 D 866768 CDS YP_003034293.1 253771462 8160232 28895..29392 1 NC_012947.1 KEGG: sfv:SFV_3836 transcriptional regulator; transcriptional regulator 29392 8160232 ECBD_0028 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator YP_003034293.1 28895 D 866768 CDS YP_003034294.1 253771463 8160233 complement(29400..30584) 1 NC_012947.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 30584 emrD 8160233 emrD Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug resistance protein D YP_003034294.1 29400 R 866768 CDS YP_003034295.1 253771464 8160234 30741..30989 1 NC_012947.1 KEGG: sbc:SbBS512_E4246 hypothetical protein; hypothetical protein 30989 8160234 ECBD_0030 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034295.1 30741 D 866768 CDS YP_003034296.1 253771465 8160235 complement(31241..31723) 1 NC_012947.1 KEGG: ses:SARI_03851 hypothetical protein; hypothetical protein 31723 8160235 ECBD_0031 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034296.1 31241 R 866768 CDS YP_003034297.1 253771466 8160236 31722..33410 1 NC_012947.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: elf:LF82_1102 acetolactate synthase isozyme I large subunit; acetolactate synthase catalytic subunit 33410 8160236 ECBD_0032 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetolactate synthase catalytic subunit YP_003034297.1 31722 D 866768 CDS YP_003034298.1 253771467 8160237 33414..33704 1 NC_012947.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 33704 8160237 ECBD_0033 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetolactate synthase 1 regulatory subunit YP_003034298.1 33414 D 866768 CDS YP_003034299.1 253771468 8160238 33779..34369 1 NC_012947.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA 34369 8160238 ECBD_0034 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator UhpA YP_003034299.1 33779 D 866768 CDS YP_003034300.1 253771469 8160239 34369..35871 1 NC_012947.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 35871 8160239 ECBD_0035 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensory histidine kinase UhpB YP_003034300.1 34369 D 866768 CDS YP_003034301.1 253771470 8160240 35881..37200 1 NC_012947.1 membrane protein regulates uhpT expression; regulatory protein UhpC 37200 8160240 ECBD_0036 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulatory protein UhpC YP_003034301.1 35881 D 866768 CDS YP_003034302.1 253771471 8160241 37338..38729 1 NC_012947.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 38729 uhpT 8160241 uhpT Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar phosphate antiporter YP_003034302.1 37338 D 866768 CDS YP_003034303.1 253771472 8160242 complement(38775..40541) 1 NC_012947.1 catalyzes the formation of hypoxanthine from adenine; in E. coli this activity has been detected in mutant strains but not in wild type; cryptic adenine deaminase 40541 8160242 ECBD_0038 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cryptic adenine deaminase YP_003034303.1 38775 R 866768 CDS YP_003034304.1 253771473 8160243 40716..42050 1 NC_012947.1 PFAM: xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: sbc:SbBS512_E4255 inorganic anion transporter sulfate permease (SulP) family; xanthine/uracil/vitamin C permease 42050 8160243 ECBD_0039 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine/uracil/vitamin C permease YP_003034304.1 40716 D 866768 CDS YP_003034305.1 253771474 8160244 42103..42555 1 NC_012947.1 PFAM: protein of unknown function DUF1198; KEGG: sdy:SDY_4144 hypothetical protein; hypothetical protein 42555 8160244 ECBD_0040 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034305.1 42103 D 866768 CDS YP_003034306.1 253771475 8160245 42766..43956 1 NC_012947.1 experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; ribonucleoside transporter 43956 nepI 8160245 nepI Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleoside transporter YP_003034306.1 42766 D 866768 CDS YP_003034307.1 253771476 8160246 complement(43997..44290) 1 NC_012947.1 KEGG: sbo:SBO_3710 transporter; transporter 44290 8160246 ECBD_0042 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter YP_003034307.1 43997 R 866768 CDS YP_003034308.1 253771477 8160247 complement(44295..44414) 1 NC_012947.1 hypothetical protein 44414 8160247 ECBD_0043 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034308.1 44295 R 866768 CDS YP_003034309.1 253771478 8160248 44512..45330 1 NC_012947.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: sdy:SDY_4499 cytoplasmic membrane lipoprotein-28; cytoplasmic membrane lipoprotein-28 45330 8160248 ECBD_0044 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic membrane lipoprotein-28 YP_003034309.1 44512 D 866768 CDS YP_003034310.1 253771479 8160249 complement(45334..46257) 1 NC_012947.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: elf:LF82_3359 uncharacterized inner membrane transporter YicL; carboxylate/amino acid/amine transporter 46257 8160249 ECBD_0045 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxylate/amino acid/amine transporter YP_003034310.1 45334 R 866768 CDS YP_003034311.1 253771480 8160250 complement(46368..47552) 1 NC_012947.1 TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; sugar efflux transporter 47552 8160250 ECBD_0046 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar efflux transporter YP_003034311.1 46368 R 866768 CDS YP_003034312.1 253771481 8160251 complement(47934..48080) 1 NC_012947.1 KEGG: ypb:YPTS_4098 hypothetical protein; hypothetical protein 48080 8160251 ECBD_0047 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034312.1 47934 R 866768 CDS YP_003034313.1 253771482 8160252 complement(48342..49187) 1 NC_012947.1 KEGG: seh:SeHA_C4673 hypothetical protein; hypothetical protein 49187 8160252 ECBD_0048 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034313.1 48342 R 866768 CDS YP_003034314.1 253771483 8160253 complement(49272..49469) 1 NC_012947.1 PFAM: protein of unknown function DUF957; KEGG: sfl:SF3001 hypothetical protein; hypothetical protein 49469 8160253 ECBD_0049 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034314.1 49272 R 866768 CDS YP_003034315.1 253771484 8160254 complement(49481..49969) 1 NC_012947.1 KEGG: sfx:S3205 hypothetical protein; hypothetical protein 49969 8160254 ECBD_0050 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034315.1 49481 R 866768 CDS YP_003034316.1 253771485 8160255 complement(49966..50331) 1 NC_012947.1 PFAM: protein of unknown function DUF1219; KEGG: sfx:S3204 hypothetical protein; hypothetical protein 50331 8160255 ECBD_0051 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034316.1 49966 R 866768 CDS YP_003034317.1 253771486 8160256 complement(50229..51353) 1 NC_012947.1 PFAM: Integrase catalytic region; Integrase catalytic region 51353 8160256 ECBD_0052 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003034317.1 50229 R 866768 CDS YP_003034318.1 253771487 8160257 complement(51310..51666) 1 NC_012947.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_4359 ISEhe3 orfA; transposase IS3/IS911 family protein 51666 8160257 ECBD_0053 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS3/IS911 family protein YP_003034318.1 51310 R 866768 CDS YP_003034319.1 253771488 8160258 complement(52699..56196) 1 NC_012947.1 TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin; KEGG: cko:CKO_00426 hypothetical protein; outer membrane autotransporter barrel domain protein 56196 8160258 ECBD_0054 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane autotransporter barrel domain protein YP_003034319.1 52699 R 866768 CDS YP_003034320.1 253771489 8160260 57475..57630 1 NC_012947.1 hypothetical protein 57630 8160260 ECBD_0056 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034320.1 57475 D 866768 CDS YP_003034321.1 253771490 8160261 57679..58053 1 NC_012947.1 KEGG: kpn:KPN_pKPN5p08236 hypothetical protein; hypothetical protein 58053 8160261 ECBD_0057 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034321.1 57679 D 866768 CDS YP_003034322.1 253771491 8160262 58206..58517 1 NC_012947.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 58517 8160262 ECBD_0058 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS3/IS911 family protein YP_003034322.1 58206 D 866768 CDS YP_003034323.1 253771492 8160263 complement(58364..59527) 1 NC_012947.1 KEGG: seh:SeHA_A0075 TrbC; TrbC 59527 8160263 ECBD_0059 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TrbC YP_003034323.1 58364 R 866768 CDS YP_003034324.1 253771493 8160264 complement(59581..60066) 1 NC_012947.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cko:CKO_03842 single-stranded DNA-binding protein; single-strand binding protein 60066 8160264 ECBD_0060 Escherichia coli 'BL21-Gold(DE3)pLysS AG' single-strand binding protein YP_003034324.1 59581 R 866768 CDS YP_003034325.1 253771494 8160265 complement(60714..63095) 1 NC_012947.1 PFAM: glycoside hydrolase family 31; KEGG: ssn:SSON_0800 glucosidase; glucan 1,3-alpha-glucosidase 63095 8160265 ECBD_0061 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucan 1,3-alpha-glucosidase YP_003034325.1 60714 R 866768 CDS YP_003034326.1 253771495 8160266 complement(63110..64411) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_0801 hexuronate transporter; major facilitator superfamily MFS_1 64411 8160266 ECBD_0062 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003034326.1 63110 R 866768 CDS YP_003034327.1 253771496 8160267 64673..65743 1 NC_012947.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ssn:SSON_0802 transcriptional regulator; LacI family transcriptional regulator 65743 8160267 ECBD_0063 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LacI family transcriptional regulator YP_003034327.1 64673 D 866768 CDS YP_003034328.1 253771497 8160268 complement(65768..65998) 1 NC_012947.1 hypothetical protein 65998 8160268 ECBD_0064 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034328.1 65768 R 866768 CDS YP_003034329.1 253771498 8160269 complement(66141..67184) 1 NC_012947.1 KEGG: sfv:SFV_3869 hypothetical protein; hypothetical protein 67184 8160269 ECBD_0065 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034329.1 66141 R 866768 CDS YP_003034330.1 253771499 8160270 complement(67595..68779) 1 NC_012947.1 PFAM: integrase; KEGG: ssn:SSON_3744 integrase; integrase 68779 8160270 ECBD_0066 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integrase YP_003034330.1 67595 R 866768 CDS YP_003034331.1 253771500 8160272 69466..70848 1 NC_012947.1 may be involved in the transport of galactosides-pentoses-hexuronides; transporter 70848 8160272 ECBD_0067 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter YP_003034331.1 69466 D 866768 CDS YP_003034332.1 253771501 8160273 70858..73176 1 NC_012947.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase YicI 73176 8160273 ECBD_0068 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha-xylosidase YicI YP_003034332.1 70858 D 866768 CDS YP_003034333.1 253771502 8160274 complement(73229..74938) 1 NC_012947.1 PFAM: AsmA family protein; KEGG: sfx:S4074 hypothetical protein; AsmA family protein 74938 8160274 ECBD_0069 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AsmA family protein YP_003034333.1 73229 R 866768 CDS YP_003034334.1 253771503 8160275 complement(75059..76450) 1 NC_012947.1 TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_3751 transport protein; uracil-xanthine permease 76450 8160275 ECBD_0070 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uracil-xanthine permease YP_003034334.1 75059 R 866768 CDS YP_003034335.1 253771504 8160276 76730..77935 1 NC_012947.1 TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: sdy:SDY_4085 glutamate transport; sodium/glutamate symporter 77935 8160276 ECBD_0071 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sodium/glutamate symporter YP_003034335.1 76730 D 866768 CDS YP_003034336.1 253771505 8160277 77938..78804 1 NC_012947.1 KEGG: efe:EFER_3945 hypothetical protein; hypothetical protein 78804 8160277 ECBD_0072 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034336.1 77938 D 866768 CDS YP_003034337.1 253771506 8160278 complement(78789..80870) 1 NC_012947.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 80870 8160278 ECBD_0073 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent DNA helicase RecG YP_003034337.1 78789 R 866768 CDS YP_003034338.1 253771507 8160279 complement(80876..81565) 1 NC_012947.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 81565 8160279 ECBD_0074 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA guanosine-2'-O-methyltransferase YP_003034338.1 80876 R 866768 CDS YP_003034339.1 253771508 8160280 complement(81572..83680) 1 NC_012947.1 KEGG: sfv:SFV_3879 bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 83680 8160280 ECBD_0075 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_003034339.1 81572 R 866768 CDS YP_003034340.1 253771509 8160281 complement(83699..83974) 1 NC_012947.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas; DNA-directed RNA polymerase subunit omega 83974 rpoZ 8160281 rpoZ Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-directed RNA polymerase subunit omega YP_003034340.1 83699 R 866768 CDS YP_003034341.1 253771510 8160282 complement(84029..84652) 1 NC_012947.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 84652 gmk 8160282 gmk Escherichia coli 'BL21-Gold(DE3)pLysS AG' guanylate kinase YP_003034341.1 84029 R 866768 CDS YP_003034342.1 253771511 8160283 84910..86592 1 NC_012947.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 86592 ligB 8160283 ligB Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD-dependent DNA ligase LigB YP_003034342.1 84910 D 866768 CDS YP_003034343.1 253771512 8160284 complement(86589..87206) 1 NC_012947.1 PFAM: protein of unknown function UPF0126; KEGG: sdy:SDY_4077 hypothetical protein; hypothetical protein 87206 8160284 ECBD_0079 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034343.1 86589 R 866768 CDS YP_003034344.1 253771513 8160285 complement(87497..88321) 1 NC_012947.1 KEGG: sbc:SbBS512_E4096 DNA-damage-inducible protein D; DNA-damage-inducible protein D 88321 dinD 8160285 dinD Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-damage-inducible protein D YP_003034344.1 87497 R 866768 CDS YP_003034345.1 253771514 8160286 88385..88525 1 NC_012947.1 KEGG: sbc:SbBS512_E4095 hypothetical protein; hypothetical protein 88525 8160286 ECBD_0081 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034345.1 88385 D 866768 CDS YP_003034346.1 253771515 8160287 complement(88542..89405) 1 NC_012947.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: ssn:SSON_3762 hypothetical protein; hypothetical protein 89405 8160287 ECBD_0082 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034346.1 88542 R 866768 CDS YP_003034347.1 253771516 8160288 89532..90248 1 NC_012947.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 90248 rph 8160288 rph Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease PH YP_003034347.1 89532 D 866768 CDS YP_003034348.1 253771517 8160289 90314..90955 1 NC_012947.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 90955 pyrE 8160289 pyrE Escherichia coli 'BL21-Gold(DE3)pLysS AG' orotate phosphoribosyltransferase YP_003034348.1 90314 D 866768 CDS YP_003034349.1 253771518 8160290 complement(90992..91588) 1 NC_012947.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 91588 slmA 8160290 slmA Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoid occlusion protein YP_003034349.1 90992 R 866768 CDS YP_003034350.1 253771519 8160373 complement(91695..92153) 1 NC_012947.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 92153 dut 8160373 dut Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxyuridine 5'-triphosphate nucleotidohydrolase YP_003034350.1 91695 R 866768 CDS YP_003034351.1 253771520 8156337 complement(92131..93351) 1 NC_012947.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 93351 8156337 ECBD_0087 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_003034351.1 92131 R 866768 CDS YP_003034352.1 253771521 8156338 93523..94191 1 NC_012947.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 94191 radC 8156338 radC Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA repair protein RadC YP_003034352.1 93523 D 866768 CDS YP_003034353.1 253771522 8156339 94408..94644 1 NC_012947.1 required for 70S ribosome assembly; 50S ribosomal protein L28 94644 rpmB 8156339 rpmB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L28 YP_003034353.1 94408 D 866768 CDS YP_003034354.1 253771523 8156340 94665..94832 1 NC_012947.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 94832 rpmG 8156340 rpmG Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L33 YP_003034354.1 94665 D 866768 CDS YP_003034355.1 253771524 8156341 94930..95739 1 NC_012947.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 95739 8156341 ECBD_0091 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formamidopyrimidine-DNA glycosylase YP_003034355.1 94930 D 866768 CDS YP_003034356.1 253771525 8156342 complement(95778..96257) 1 NC_012947.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 96257 coaD 8156342 coaD Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphopantetheine adenylyltransferase YP_003034356.1 95778 R 866768 CDS YP_003034357.1 253771526 8156343 complement(96265..97542) 1 NC_012947.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 97542 8156343 ECBD_0093 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-deoxy-D-manno-octulosonic-acid transferase YP_003034357.1 96265 R 866768 CDS YP_003034358.1 253771527 8156344 97991..99013 1 NC_012947.1 TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: glycosyl transferase family 9; KEGG: sdy:SDY_4062 lipopolysaccharide core biosynthesis protein; lipopolysaccharide core biosynthesis protein 99013 8156344 ECBD_0094 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipopolysaccharide core biosynthesis protein YP_003034358.1 97991 D 866768 CDS YP_003034359.1 253771528 8156345 99010..100134 1 NC_012947.1 PFAM: glycosyl transferase group 1; KEGG: sfv:SFV_3900 LPS alpha1,3-glucosyltransferase; glycosyl transferase group 1 100134 8156345 ECBD_0095 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase group 1 YP_003034359.1 99010 D 866768 CDS YP_003034360.1 253771529 8156346 100127..100924 1 NC_012947.1 PFAM: lipopolysaccharide kinase; KEGG: sdy:SDY_4060 LPS biosynthesis enzyme; lipopolysaccharide kinase 100924 8156346 ECBD_0096 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipopolysaccharide kinase YP_003034360.1 100127 D 866768 CDS YP_003034361.1 253771530 8156347 100940..101956 1 NC_012947.1 PFAM: glycosyl transferase family 8; glycosyl transferase family 8 domain protein; KEGG: sbo:SBO_3631 UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1, 3-D-galactosylt ransferase; Lipopolysaccharide 3-alpha-galactosyltransferase 101956 8156347 ECBD_0097 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lipopolysaccharide 3-alpha-galactosyltransferase YP_003034361.1 100940 D 866768 CDS YP_003034362.1 253771531 8156349 102527..102802 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 102802 8156349 ECBD_0099 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003034362.1 102527 D 866768 CDS YP_003034363.1 253771532 8156350 102721..103224 1 NC_012947.1 PFAM: IS1 transposase; KEGG: dps:DP0860 insertion element IS1 1/5/6 protein (InsB); IS1 transposase 103224 8156350 ECBD_0100 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003034363.1 102721 D 866768 CDS YP_003034364.1 253771533 8156351 103754..104446 1 NC_012947.1 PFAM: lipopolysaccharide core biosynthesis protein; KEGG: sdy:SDY_4057 lipopolysaccharide core biosynthesis protein; lipopolysaccharide core biosynthesis protein 104446 8156351 ECBD_0101 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipopolysaccharide core biosynthesis protein YP_003034364.1 103754 D 866768 CDS YP_003034365.1 253771534 8156352 104472..105497 1 NC_012947.1 PFAM: glycosyl transferase family 8; glycosyl transferase family 8 domain protein; KEGG: ssn:SSON_3781 UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase; Lipopolysaccharide glucosyltransferase I 105497 8156352 ECBD_0102 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lipopolysaccharide glucosyltransferase I YP_003034365.1 104472 D 866768 CDS YP_003034366.1 253771535 8156353 105582..106565 1 NC_012947.1 PFAM: glycosyl transferase family 2; KEGG: ssn:SSON_3782 beta1,3-glucosyltransferase; glycosyl transferase family 2 106565 8156353 ECBD_0103 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase family 2 YP_003034366.1 105582 D 866768 CDS YP_003034367.1 253771536 8156354 106611..107864 1 NC_012947.1 PFAM: O-antigen polymerase; KEGG: ssn:SSON_3783 lipid A-core, surface polymer ligase; O-antigen polymerase 107864 8156354 ECBD_0104 Escherichia coli 'BL21-Gold(DE3)pLysS AG' O-antigen polymerase YP_003034367.1 106611 D 866768 CDS YP_003034368.1 253771537 8156355 complement(107934..108914) 1 NC_012947.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: sbc:SbBS512_E4048 lipopolysaccharide heptosyltransferase I; ADP-heptose:LPS heptosyl transferase I 108914 8156355 ECBD_0105 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ADP-heptose:LPS heptosyl transferase I YP_003034368.1 107934 R 866768 CDS YP_003034369.1 253771538 8156356 complement(108918..109964) 1 NC_012947.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose:LPS heptosyltransferase II 109964 8156356 ECBD_0106 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ADP-heptose:LPS heptosyltransferase II YP_003034369.1 108918 R 866768 CDS YP_003034370.1 253771539 8156357 complement(109974..110906) 1 NC_012947.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-mannoheptose-6-epimerase 110906 rfaD 8156357 rfaD Escherichia coli 'BL21-Gold(DE3)pLysS AG' ADP-L-glycero-D-mannoheptose-6-epimerase YP_003034370.1 109974 R 866768 CDS YP_003034371.1 253771540 8156358 111120..112316 1 NC_012947.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 112316 8156358 ECBD_0108 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-amino-3-ketobutyrate coenzyme A ligase YP_003034371.1 111120 D 866768 CDS YP_003034372.1 253771541 8156359 112326..113351 1 NC_012947.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 113351 tdh 8156359 tdh Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-threonine 3-dehydrogenase YP_003034372.1 112326 D 866768 CDS YP_003034373.1 253771542 8156360 113590..114624 1 NC_012947.1 PFAM: glycosyl transferase family 2; glycosyl transferase 114624 8156360 ECBD_0110 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase YP_003034373.1 113590 D 866768 CDS YP_003034374.1 253771543 8156361 complement(114611..115570) 1 NC_012947.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: sbc:SbBS512_E4043 polysaccharide deacetylase family protein; hypothetical protein 115570 8156361 ECBD_0111 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034374.1 114611 R 866768 CDS YP_003034375.1 253771544 8156362 complement(115574..116833) 1 NC_012947.1 PFAM: peptidase M23; hypothetical protein 116833 8156362 ECBD_0112 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034375.1 115574 R 866768 CDS YP_003034376.1 253771545 8156363 complement(116867..118411) 1 NC_012947.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 118411 8156363 ECBD_0113 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglyceromutase YP_003034376.1 116867 R 866768 CDS YP_003034377.1 253771546 8156364 118656..119087 1 NC_012947.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: sbc:SbBS512_E4039 rhodanese domain protein; rhodanese 119087 8156364 ECBD_0114 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rhodanese YP_003034377.1 118656 D 866768 CDS YP_003034378.1 253771547 8156365 119229..119480 1 NC_012947.1 TIGRFAM: glutaredoxin; PFAM: glutaredoxin; KEGG: sfv:SFV_3921 glutaredoxin; glutaredoxin 119480 8156365 ECBD_0115 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutaredoxin YP_003034378.1 119229 D 866768 CDS YP_003034379.1 253771548 8156366 119543..120010 1 NC_012947.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 120010 8156366 ECBD_0116 Escherichia coli 'BL21-Gold(DE3)pLysS AG' preprotein translocase subunit SecB YP_003034379.1 119543 D 866768 CDS YP_003034380.1 253771549 8156367 120010..121029 1 NC_012947.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 121029 gpsA 8156367 gpsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_003034380.1 120010 D 866768 CDS YP_003034381.1 253771550 8156368 121109..121930 1 NC_012947.1 catalyzes the O-acetylation of serine; serine acetyltransferase 121930 cysE 8156368 cysE Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine acetyltransferase YP_003034381.1 121109 D 866768 CDS YP_003034382.1 253771551 8156369 complement(121983..122456) 1 NC_012947.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 122456 8156369 ECBD_0119 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA/rRNA methyltransferase YibK YP_003034382.1 121983 R 866768 CDS YP_003034383.1 253771552 8156370 complement(122610..123800) 1 NC_012947.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 123800 lldD 8156370 lldD Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-lactate dehydrogenase YP_003034383.1 122610 R 866768 CDS YP_003034384.1 253771553 8156371 complement(123797..124573) 1 NC_012947.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 124573 8156371 ECBD_0121 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor LldR YP_003034384.1 123797 R 866768 CDS YP_003034385.1 253771554 8156372 complement(124573..126228) 1 NC_012947.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: sbc:SbBS512_E4029 L-lactate permease; L-lactate permease 126228 8156372 ECBD_0122 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-lactate permease YP_003034385.1 124573 R 866768 CDS YP_003034386.1 253771555 8156373 complement(126596..131446) 1 NC_012947.1 PFAM: YadA domain protein; Hep_Hag repeat-containing protein; Haemagluttinin domain protein; KEGG: ssn:SSON_3803 adhesin; YadA domain protein 131446 8156373 ECBD_0123 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YadA domain protein YP_003034386.1 126596 R 866768 CDS YP_003034387.1 253771556 8156374 complement(131490..132173) 1 NC_012947.1 KEGG: sfv:SFV_3931 inner membrane lipoprotein; inner membrane lipoprotein 132173 8156374 ECBD_0124 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane lipoprotein YP_003034387.1 131490 R 866768 CDS YP_003034388.1 253771557 8156375 complement(132717..133079) 1 NC_012947.1 KEGG: sbc:SbBS512_E4020 hypothetical protein; hypothetical protein 133079 8156375 ECBD_0125 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034388.1 132717 R 866768 CDS YP_003034389.1 253771558 8156376 133364..133573 1 NC_012947.1 KEGG: sfv:SFV_3935 cytoplasmic protein; cytoplasmic protein 133573 8156376 ECBD_0126 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic protein YP_003034389.1 133364 D 866768 CDS YP_003034390.1 253771559 8156377 complement(133585..134172) 1 NC_012947.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 134172 mtlR 8156377 mtlR Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannitol repressor protein YP_003034390.1 133585 R 866768 CDS YP_003034391.1 253771560 8156378 complement(134172..135320) 1 NC_012947.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: elf:LF82_1407 mannitol-1-phosphate 5-dehydrogenase; mannitol-1-phosphate 5-dehydrogenase 135320 8156378 ECBD_0128 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannitol-1-phosphate 5-dehydrogenase YP_003034391.1 134172 R 866768 CDS YP_003034392.1 253771561 8156379 complement(135550..137463) 1 NC_012947.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; PTS system, mannitol-specific IIC subunit 137463 8156379 ECBD_0129 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, mannitol-specific IIC subunit YP_003034392.1 135550 R 866768 CDS YP_003034393.1 253771562 8156380 138000..138362 1 NC_012947.1 KEGG: ssn:SSON_3810 hypothetical protein; hypothetical protein 138362 8156380 ECBD_0130 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034393.1 138000 D 866768 CDS YP_003034394.1 253771563 8156381 138365..139501 1 NC_012947.1 PFAM: secretion protein HlyD; secretion protein HlyD 139501 8156381 ECBD_0131 Escherichia coli 'BL21-Gold(DE3)pLysS AG' secretion protein HlyD YP_003034394.1 138365 D 866768 CDS YP_003034395.1 253771564 8156382 complement(139961..140398) 1 NC_012947.1 hypothetical protein 140398 8156382 ECBD_0132 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034395.1 139961 R 866768 CDS YP_003034396.1 253771565 8156384 complement(141105..141566) 1 NC_012947.1 KEGG: sbo:SBO_3594 hypothetical protein; hypothetical protein 141566 8156384 ECBD_0134 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034396.1 141105 R 866768 CDS YP_003034397.1 253771566 8156385 complement(141578..142516) 1 NC_012947.1 PFAM: RHS protein; KEGG: sbo:SBO_3593 RhsA; RHS protein 142516 8156385 ECBD_0135 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RHS protein YP_003034397.1 141578 R 866768 CDS YP_003034398.1 253771567 8156386 complement(142564..143406) 1 NC_012947.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: sei:SPC_1578 hypothetical protein; hypothetical protein 143406 8156386 ECBD_0136 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034398.1 142564 R 866768 CDS YP_003034399.1 253771568 8156387 complement(143427..144299) 1 NC_012947.1 KEGG: sbo:SBO_0563 RhsC protein in rhs element; Rhs family protein-like protein 144299 8156387 ECBD_0137 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Rhs family protein-like protein YP_003034399.1 143427 R 866768 CDS YP_003034400.1 253771569 8156388 144528..145136 1 NC_012947.1 PFAM: glutathione S-transferase domain; KEGG: sbc:SbBS512_E4007 glutathione S-transferase; glutathione S-transferase 145136 8156388 ECBD_0138 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione S-transferase YP_003034400.1 144528 D 866768 CDS YP_003034401.1 253771570 8156389 145234..146625 1 NC_012947.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 146625 8156389 ECBD_0139 Escherichia coli 'BL21-Gold(DE3)pLysS AG' selenocysteine synthase YP_003034401.1 145234 D 866768 CDS YP_003034402.1 253771571 8156390 146622..148466 1 NC_012947.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: elf:LF82_2111 selenocysteine-specific elongation factor; selenocysteinyl-tRNA-specific translation factor 148466 8156390 ECBD_0140 Escherichia coli 'BL21-Gold(DE3)pLysS AG' selenocysteinyl-tRNA-specific translation factor YP_003034402.1 146622 D 866768 CDS YP_003034403.1 253771572 8156391 148656..149807 1 NC_012947.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: elf:LF82_3344 alcohol dehydrogenase; alcohol dehydrogenase 149807 8156391 ECBD_0141 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase YP_003034403.1 148656 D 866768 CDS YP_003034404.1 253771573 8156392 149972..151510 1 NC_012947.1 PFAM: aldehyde dehydrogenase; KEGG: sbc:SbBS512_E4003 aldehyde dehydrogenase B; aldehyde dehydrogenase (NAD(+)) 151510 8156392 ECBD_0142 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldehyde dehydrogenase (NAD(+)) YP_003034404.1 149972 D 866768 CDS YP_003034405.1 253771574 8156393 complement(151729..151941) 1 NC_012947.1 KEGG: sfv:SFV_3946 hypothetical protein; hypothetical protein 151941 8156393 ECBD_0143 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034405.1 151729 R 866768 CDS YP_003034406.1 253771575 8156394 152055..152378 1 NC_012947.1 hypothetical protein 152378 8156394 ECBD_0144 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034406.1 152055 D 866768 CDS YP_003034407.1 253771576 8156395 152384..153520 1 NC_012947.1 PFAM: secretion protein HlyD; secretion protein HlyD 153520 8156395 ECBD_0145 Escherichia coli 'BL21-Gold(DE3)pLysS AG' secretion protein HlyD YP_003034407.1 152384 D 866768 CDS YP_003034408.1 253771577 8156396 complement(153517..154491) 1 NC_012947.1 PFAM: regulatory protein LysR; LysR substrate-binding; LysR family transcriptional regulator 154491 8156396 ECBD_0146 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003034408.1 153517 R 866768 CDS YP_003034409.1 253771578 8156397 154615..155355 1 NC_012947.1 PFAM: MltA-interacting MipA family protein; KEGG: sfv:SFV_3952 outer membrane protein; MltA-interacting MipA family protein 155355 8156397 ECBD_0147 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MltA-interacting MipA family protein YP_003034409.1 154615 D 866768 CDS YP_003034410.1 253771579 8156398 complement(155476..157455) 1 NC_012947.1 PFAM: protein of unknown function DUF1680; KEGG: sfv:SFV_3953 hypothetical protein; hypothetical protein 157455 8156398 ECBD_0148 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034410.1 155476 R 866768 CDS YP_003034411.1 253771580 8156399 complement(157466..158866) 1 NC_012947.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: sfv:SFV_3954 permease; sugar (glycoside-Pentoside-Hexuronide) transporter 158866 8156399 ECBD_0149 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar (glycoside-Pentoside-Hexuronide) transporter YP_003034411.1 157466 R 866768 CDS YP_003034412.1 253771581 8156400 159092..159907 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sfv:SFV_3955 transcriptional regulator; AraC family transcriptional regulator 159907 8156400 ECBD_0150 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003034412.1 159092 D 866768 CDS YP_003034413.1 253771582 8156401 complement(159939..160634) 1 NC_012947.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 160634 sgbE 8156401 sgbE Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-ribulose-5-phosphate 4-epimerase YP_003034413.1 159939 R 866768 CDS YP_003034414.1 253771583 8156402 complement(160628..161488) 1 NC_012947.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 161488 8156402 ECBD_0152 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-xylulose 5-phosphate 3-epimerase YP_003034414.1 160628 R 866768 CDS YP_003034415.1 253771584 8156403 complement(161481..162143) 1 NC_012947.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 162143 sgbH 8156403 sgbH Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-keto-L-gulonate-6-phosphate decarboxylase YP_003034415.1 161481 R 866768 CDS YP_003034416.1 253771585 8156404 complement(162140..163636) 1 NC_012947.1 PFAM: carbohydrate kinase FGGY; KEGG: sfv:SFV_3959 L-xylulose kinase, cryptic; carbohydrate kinase FGGY 163636 8156404 ECBD_0154 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbohydrate kinase FGGY YP_003034416.1 162140 R 866768 CDS YP_003034417.1 253771586 8156405 complement(163640..164626) 1 NC_012947.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfv:SFV_3960 solute-binding transporter; TRAP dicarboxylate transporter DctP subunit 164626 8156405 ECBD_0155 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TRAP dicarboxylate transporter DctP subunit YP_003034417.1 163640 R 866768 CDS YP_003034418.1 253771587 8156406 complement(164639..165916) 1 NC_012947.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; TRAP dicarboxylate transporter DctM subunit 165916 8156406 ECBD_0156 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TRAP dicarboxylate transporter DctM subunit YP_003034418.1 164639 R 866768 CDS YP_003034419.1 253771588 8156407 complement(165919..166392) 1 NC_012947.1 membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transporter (TRAP) YiaMNO; 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM 166392 8156407 ECBD_0157 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM YP_003034419.1 165919 R 866768 CDS YP_003034420.1 253771589 8156408 complement(166510..166977) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: efe:EFER_3574 hypothetical protein; hypothetical protein 166977 8156408 ECBD_0158 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034420.1 166510 R 866768 CDS YP_003034421.1 253771590 8156409 complement(166989..167987) 1 NC_012947.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 167987 8156409 ECBD_0159 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2,3-diketo-L-gulonate reductase YP_003034421.1 166989 R 866768 CDS YP_003034422.1 253771591 8156410 168188..169036 1 NC_012947.1 PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: sbo:SBO_3582 regulator; transcriptional regulator, IclR family 169036 8156410 ECBD_0160 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator, IclR family YP_003034422.1 168188 D 866768 CDS YP_003034423.1 253771592 8156411 169138..169611 1 NC_012947.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_3581 hypothetical protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein 169611 8156411 ECBD_0161 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003034423.1 169138 D 866768 CDS YP_003034424.1 253771593 8156412 complement(169762..171015) 1 NC_012947.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 171015 avtA 8156412 avtA Escherichia coli 'BL21-Gold(DE3)pLysS AG' valine--pyruvate transaminase YP_003034424.1 169762 R 866768 CDS YP_003034425.1 253771594 8156413 complement(171193..173223) 1 NC_012947.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase precursor 173223 malS 8156413 malS Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic alpha-amylase precursor YP_003034425.1 171193 R 866768 CDS YP_003034426.1 253771595 8156414 173543..174367 1 NC_012947.1 PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: sfv:SFV_3970 hypothetical protein; hypothetical protein 174367 8156414 ECBD_0164 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034426.1 173543 D 866768 CDS YP_003034427.1 253771596 8156415 complement(174563..175741) 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E3953 xylose operon regulatory protein; AraC family transcriptional regulator 175741 8156415 ECBD_0165 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003034427.1 174563 R 866768 CDS YP_003034428.1 253771597 8156416 complement(175819..177000) 1 NC_012947.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3954 D-xylose ABC transporter permease; inner-membrane translocator 177000 8156416 ECBD_0166 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner-membrane translocator YP_003034428.1 175819 R 866768 CDS YP_003034429.1 253771598 8157020 complement(178595..179587) 1 NC_012947.1 periplasmic substrate-binding component of the ATP-dependent xylose transporter; high affinity; D-xylose transporter subunit XylF 179587 xylF 8157020 xylF Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-xylose transporter subunit XylF YP_003034429.1 178595 R 866768 CDS YP_003034430.1 253771599 8157021 179953..181275 1 NC_012947.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 181275 8157021 ECBD_0169 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xylose isomerase YP_003034430.1 179953 D 866768 CDS YP_003034431.1 253771600 8157022 181347..182801 1 NC_012947.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: sfv:SFV_3976 xylulokinase; xylulokinase 182801 8157022 ECBD_0170 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xylulokinase YP_003034431.1 181347 D 866768 CDS YP_003034432.1 253771601 8157023 182970..183311 1 NC_012947.1 PFAM: YiaAB two helix domain protein; hypothetical protein 183311 8157023 ECBD_0171 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034432.1 182970 D 866768 CDS YP_003034433.1 253771602 8157024 183357..183794 1 NC_012947.1 PFAM: YiaAB two helix domain protein; KEGG: sfv:SFV_3978 hypothetical protein; hypothetical protein 183794 8157024 ECBD_0172 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034433.1 183357 D 866768 CDS YP_003034434.1 253771603 8157025 complement(183836..184831) 1 NC_012947.1 PFAM: acyltransferase 3; KEGG: sdy:SDY_4340 hypothetical protein; acyltransferase 3 184831 8157025 ECBD_0173 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyltransferase 3 YP_003034434.1 183836 R 866768 CDS YP_003034435.1 253771604 8157026 185006..185305 1 NC_012947.1 KEGG: sfv:SFV_3980 lipoprotein; lipoprotein 185305 8157026 ECBD_0174 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein YP_003034435.1 185006 D 866768 CDS YP_003034436.1 253771605 8157027 185400..186311 1 NC_012947.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 186311 glyQ 8157027 glyQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycyl-tRNA synthetase subunit alpha YP_003034436.1 185400 D 866768 CDS YP_003034437.1 253771606 8157028 186321..188390 1 NC_012947.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 188390 glyS 8157028 glyS Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycyl-tRNA synthetase subunit beta YP_003034437.1 186321 D 866768 CDS YP_003034438.1 253771607 8157029 complement(188669..189520) 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: sfv:SFV_3530 IS150 ORF2; Integrase catalytic region 189520 8157029 ECBD_0177 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003034438.1 188669 R 866768 CDS YP_003034439.1 253771608 8157030 complement(189517..190038) 1 NC_012947.1 KEGG: sfx:S1483 IS103 orf; IS103 orf 190038 8157030 ECBD_0178 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS103 orf YP_003034439.1 189517 R 866768 CDS YP_003034440.1 253771609 8157031 190118..190270 1 NC_012947.1 PFAM: Hok/gef cell toxic protein; KEGG: elf:LF82_1021 protein HokA; small toxic polypeptide 190270 8157031 ECBD_0179 Escherichia coli 'BL21-Gold(DE3)pLysS AG' small toxic polypeptide YP_003034440.1 190118 D 866768 CDS YP_003034441.1 253771610 8157032 complement(190457..190669) 1 NC_012947.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sea:SeAg_B3864 major cold shock protein; major cold shock protein 190669 8157032 ECBD_0180 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major cold shock protein YP_003034441.1 190457 R 866768 CDS YP_003034442.1 253771611 8157033 complement(190950..191240) 1 NC_012947.1 SMART: helix-turn-helix domain protein; KEGG: sdy:SDY_4348 transcriptional regulator; transcriptional regulator 191240 8157033 ECBD_0181 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator YP_003034442.1 190950 R 866768 CDS YP_003034443.1 253771612 8157034 191405..191557 1 NC_012947.1 hypothetical protein 191557 8157034 ECBD_0182 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034443.1 191405 D 866768 CDS YP_003034444.1 253771613 8157035 191674..192384 1 NC_012947.1 KEGG: sdy:SDY_4349 hypothetical protein; hypothetical protein 192384 8157035 ECBD_0183 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034444.1 191674 D 866768 CDS YP_003034445.1 253771614 8157036 complement(192434..193408) 1 NC_012947.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sbc:SbBS512_E3973 2-ketogluconate reductase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 193408 8157036 ECBD_0184 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003034445.1 192434 R 866768 CDS YP_003034446.1 253771615 8157037 complement(193512..194171) 1 NC_012947.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; outer membrane lipoprotein 194171 8157037 ECBD_0185 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein YP_003034446.1 193512 R 866768 CDS YP_003034447.1 253771616 8157038 194324..196657 1 NC_012947.1 KEGG: sbc:SbBS512_E3976 biotin sulfoxide reductase; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 196657 8157038 ECBD_0186 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_003034447.1 194324 D 866768 CDS YP_003034448.1 253771617 8157039 complement(196626..197066) 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E3975 acetyltransferase, GNAT family; hypothetical protein 197066 8157039 ECBD_0187 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034448.1 196626 R 866768 CDS YP_003034449.1 253771618 8157040 complement(197063..197626) 1 NC_012947.1 constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyl-adenine DNA glycosylase I 197626 8157040 ECBD_0188 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-methyl-adenine DNA glycosylase I YP_003034449.1 197063 R 866768 CDS YP_003034450.1 253771619 8157041 197784..198482 1 NC_012947.1 KEGG: sbc:SbBS512_E3978 hypothetical protein; hypothetical protein 198482 8157041 ECBD_0189 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034450.1 197784 D 866768 CDS YP_003034451.1 253771620 8157042 198711..199919 1 NC_012947.1 TIGRFAM: Oxalate/formate antiporter; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_3843 resistance protein; Oxalate/formate antiporter 199919 8157042 ECBD_0190 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Oxalate/formate antiporter YP_003034451.1 198711 D 866768 CDS YP_003034452.1 253771621 8157043 200243..201934 1 NC_012947.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 201934 8157043 ECBD_0191 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoethanolamine transferase YP_003034452.1 200243 D 866768 CDS YP_003034453.1 253771622 8157045 203013..204620 1 NC_012947.1 PFAM: extracellular solute-binding protein family 5; KEGG: sfv:SFV_3543 dipeptide transporter; extracellular solute-binding protein family 5 204620 8157045 ECBD_0192 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 5 YP_003034453.1 203013 D 866768 CDS YP_003034454.1 253771623 8157046 204928..205947 1 NC_012947.1 transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 205947 8157046 ECBD_0193 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dipeptide transporter permease DppB YP_003034454.1 204928 D 866768 CDS YP_003034455.1 253771624 8157047 205957..206859 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; dipeptide transporter 206859 8157047 ECBD_0194 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dipeptide transporter YP_003034455.1 205957 D 866768 CDS YP_003034456.1 253771625 8157048 206870..207853 1 NC_012947.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transporter DppABCDF; dipeptide transporter ATP-binding subunit 207853 dppD 8157048 dppD Escherichia coli 'BL21-Gold(DE3)pLysS AG' dipeptide transporter ATP-binding subunit YP_003034456.1 206870 D 866768 CDS YP_003034457.1 253771626 8157049 207850..208854 1 NC_012947.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 208854 dppF 8157049 dppF Escherichia coli 'BL21-Gold(DE3)pLysS AG' dipeptide transporter ATP-binding subunit YP_003034457.1 207850 D 866768 CDS YP_003034458.1 253771627 8157050 complement(208884..210155) 1 NC_012947.1 TIGRFAM: serine transporter; KEGG: ssn:SSON_3851 transporter protein; serine transporter 210155 8157050 ECBD_0197 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine transporter YP_003034458.1 208884 R 866768 CDS YP_003034459.1 253771628 8157051 210631..210738 1 NC_012947.1 KEGG: sbc:SbBS512_E3995 hypothetical protein; hypothetical protein 210738 8157051 ECBD_0198 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034459.1 210631 D 866768 CDS YP_003034460.1 253771629 8157052 211114..211221 1 NC_012947.1 KEGG: sbc:SbBS512_E3995 hypothetical protein; hypothetical protein 211221 8157052 ECBD_0199 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034460.1 211114 D 866768 CDS YP_003034461.1 253771630 8157053 211597..211704 1 NC_012947.1 KEGG: sfl:SF3573 hypothetical protein; hypothetical protein 211704 8157053 ECBD_0200 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034461.1 211597 D 866768 CDS YP_003034462.1 253771631 8157054 complement(211791..213470) 1 NC_012947.1 TIGRFAM: cellulose synthase operon protein YhjU; KEGG: sfv:SFV_3549 hypothetical protein; cellulose synthase operon protein YhjU 213470 8157054 ECBD_0201 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cellulose synthase operon protein YhjU YP_003034462.1 211791 R 866768 CDS YP_003034463.1 253771632 8157055 complement(213467..213658) 1 NC_012947.1 KEGG: sbc:SbBS512_E3999 cellulose biosynthesis protein BcsF; cellulose biosynthesis protein BcsF 213658 8157055 ECBD_0202 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cellulose biosynthesis protein BcsF YP_003034463.1 213467 R 866768 CDS YP_003034464.1 253771633 8157056 complement(213655..215214) 1 NC_012947.1 TIGRFAM: cellulose biosynthesis protein BcsE; KEGG: sfx:S4199 protease; cellulose biosynthesis protein BcsE 215214 8157056 ECBD_0203 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cellulose biosynthesis protein BcsE YP_003034464.1 213655 R 866768 CDS YP_003034465.1 253771634 8157057 215499..215687 1 NC_012947.1 KEGG: sfv:SFV_3553 hypothetical protein; hypothetical protein 215687 8157057 ECBD_0204 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034465.1 215499 D 866768 CDS YP_003034466.1 253771635 8157058 215699..216451 1 NC_012947.1 TIGRFAM: cellulose synthase operon protein YhjQ; PFAM: YhjQ family protein; KEGG: sbc:SbBS512_E3940 YhjQ protein; cell division protein 216451 8157058 ECBD_0205 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein YP_003034466.1 215699 D 866768 CDS YP_003034467.1 253771636 8157059 216448..219066 1 NC_012947.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 219066 bcsA 8157059 bcsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' cellulose synthase catalytic subunit YP_003034467.1 216448 D 866768 CDS YP_003034468.1 253771637 8157060 219113..221416 1 NC_012947.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 221416 8157060 ECBD_0207 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cellulose synthase regulator protein YP_003034468.1 219113 D 866768 CDS YP_003034469.1 253771638 8157061 221423..222529 1 NC_012947.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 222529 8157061 ECBD_0208 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endo-1,4-D-glucanase YP_003034469.1 221423 D 866768 CDS YP_003034470.1 253771639 8157062 222511..225984 1 NC_012947.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 225984 8157062 ECBD_0209 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cellulose synthase subunit BcsC YP_003034470.1 222511 D 866768 CDS YP_003034471.1 253771640 8157063 226105..228054 1 NC_012947.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; phosphodiesterase 228054 8157063 ECBD_0210 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphodiesterase YP_003034471.1 226105 D 866768 CDS YP_003034472.1 253771641 8157064 228237..229523 1 NC_012947.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 229523 8157064 ECBD_0211 Escherichia coli 'BL21-Gold(DE3)pLysS AG' C4-dicarboxylate transporter DctA YP_003034472.1 228237 D 866768 CDS YP_003034473.1 253771642 8157065 229744..231240 1 NC_012947.1 PFAM: peptidase M16 domain protein; KEGG: sdy:SDY_4547 hypothetical protein; peptidase M16 domain protein 231240 8157065 ECBD_0212 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase M16 domain protein YP_003034473.1 229744 D 866768 CDS YP_003034474.1 253771643 8157066 complement(231336..232265) 1 NC_012947.1 PFAM: PfkB domain protein; PfkB domain protein 232265 8157066 ECBD_0213 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PfkB domain protein YP_003034474.1 231336 R 866768 CDS YP_003034475.1 253771644 8157067 232497..233264 1 NC_012947.1 in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein 233264 8157067 ECBD_0214 Escherichia coli 'BL21-Gold(DE3)pLysS AG' EAL domain-containing protein YP_003034475.1 232497 D 866768 CDS YP_003034476.1 253771645 8157068 233319..235394 1 NC_012947.1 PFAM: AsmA family protein; KEGG: sbo:SBO_3523 hypothetical protein; AsmA family protein 235394 8157068 ECBD_0215 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AsmA family protein YP_003034476.1 233319 D 866768 CDS YP_003034477.1 253771646 8157069 complement(235576..236898) 1 NC_012947.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_3868 transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) 236898 8157069 ECBD_0216 Escherichia coli 'BL21-Gold(DE3)pLysS AG' metabolite/H+ symporter, major facilitator superfamily (MFS) YP_003034477.1 235576 R 866768 CDS YP_003034478.1 253771647 8157070 complement(237309..238322) 1 NC_012947.1 TIGRFAM: ribonuclease; PFAM: ribonuclease BN; KEGG: sbc:SbBS512_E3927 ribonuclease; ribonuclease 238322 8157070 ECBD_0217 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease YP_003034478.1 237309 R 866768 CDS YP_003034479.1 253771648 8157071 complement(238371..239342) 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_3520 transcriptional regulator LysR-type; LysR family transcriptional regulator 239342 8157071 ECBD_0218 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003034479.1 238371 R 866768 CDS YP_003034480.1 253771649 8157072 239790..240392 1 NC_012947.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: sbc:SbBS512_E3925 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 240392 8157072 ECBD_0219 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LuxR family transcriptional regulator YP_003034480.1 239790 D 866768 CDS YP_003034481.1 253771650 8157073 complement(240443..242092) 1 NC_012947.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 242092 treF 8157073 treF Escherichia coli 'BL21-Gold(DE3)pLysS AG' trehalase YP_003034481.1 240443 R 866768 CDS YP_003034482.1 253771651 8157074 242497..243894 1 NC_012947.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: sfv:SFV_3990 cytochrome C peroxidase; cytochrome-c peroxidase 243894 8157074 ECBD_0221 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome-c peroxidase YP_003034482.1 242497 D 866768 CDS YP_003034483.1 253771652 8157075 244105..245505 1 NC_012947.1 TIGRFAM: glutamate decarboxylase; PFAM: pyridoxal-dependent decarboxylase; KEGG: sbo:SBO_3516 glutamate decarboxylase isozyme; glutamate decarboxylase 245505 8157075 ECBD_0222 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate decarboxylase YP_003034483.1 244105 D 866768 CDS YP_003034484.1 253771653 8157076 245620..245790 1 NC_012947.1 hypothetical protein 245790 8157076 ECBD_0223 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034484.1 245620 D 866768 CDS YP_003034485.1 253771654 8157077 245875..246699 1 NC_012947.1 regulates genes in response to acid and/or during stationary phase; DNA-binding transcriptional regulator GadX 246699 8157077 ECBD_0224 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator GadX YP_003034485.1 245875 D 866768 CDS YP_003034486.1 253771655 8157078 247067..247795 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sfv:SFV_3987 AraC-type regulatory protein; AraC family transcriptional regulator 247795 8157078 ECBD_0225 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003034486.1 247067 D 866768 CDS YP_003034487.1 253771656 8157079 complement(248158..251271) 1 NC_012947.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sdy:SDY_3537 transporter permease; transporter hydrophobe/amphiphile efflux-1 (HAE1) family 251271 8157079 ECBD_0226 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter hydrophobe/amphiphile efflux-1 (HAE1) family YP_003034487.1 248158 R 866768 CDS YP_003034488.1 253771657 8157080 complement(251296..252453) 1 NC_012947.1 with MdtF and tolC is involved in resistance to rhodamine 6G, erythromycin, doxorubicin and other compounds; multidrug efflux system protein MdtE 252453 8157080 ECBD_0227 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system protein MdtE YP_003034488.1 251296 R 866768 CDS YP_003034489.1 253771658 8157081 252513..252791 1 NC_012947.1 hypothetical protein 252791 8157081 ECBD_0228 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034489.1 252513 D 866768 CDS YP_003034490.1 253771659 8157082 complement(252792..253319) 1 NC_012947.1 KEGG: sfv:SFV_3526 hypothetical protein; LuxR family transcriptional regulator 253319 8157082 ECBD_0229 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LuxR family transcriptional regulator YP_003034490.1 252792 R 866768 CDS YP_003034491.1 253771660 8157083 complement(254118..254690) 1 NC_012947.1 KEGG: sbc:SbBS512_E3909 HdeD protein; acid-resistance membrane protein 254690 8157083 ECBD_0230 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acid-resistance membrane protein YP_003034491.1 254118 R 866768 CDS YP_003034492.1 253771661 8157084 254945..255277 1 NC_012947.1 inactive form; acid-resistance protein 255277 8157084 ECBD_0231 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acid-resistance protein YP_003034492.1 254945 D 866768 CDS YP_003034493.1 253771662 8157085 255381..255719 1 NC_012947.1 KEGG: sfx:S4224 acid-resistance protein; acid-resistance protein 255719 hdeB 8157085 hdeB Escherichia coli 'BL21-Gold(DE3)pLysS AG' acid-resistance protein YP_003034493.1 255381 D 866768 CDS YP_003034494.1 253771663 8157086 255783..256430 1 NC_012947.1 inner membrane protein involved in cell density-dependent acid resistance; part of the acid fitness island (AFI) of E. coli; Mg(2+) transport ATPase 256430 8157086 ECBD_0233 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Mg(2+) transport ATPase YP_003034494.1 255783 D 866768 CDS YP_003034495.1 253771664 8157087 complement(256472..257002) 1 NC_012947.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 257002 8157087 ECBD_0234 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LuxR family transcriptional regulator YP_003034495.1 256472 R 866768 CDS YP_003034496.1 253771665 8157088 complement(257158..257724) 1 NC_012947.1 TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: sbc:SbBS512_E3904 outer membrane lipoprotein, Slp family; outer membrane lipoprotein, Slp family 257724 8157088 ECBD_0235 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein, Slp family YP_003034496.1 257158 R 866768 CDS YP_003034497.1 253771666 8157089 complement(257972..259195) 1 NC_012947.1 KEGG: sfv:SFV_3519 hypothetical protein; hypothetical protein 259195 8157089 ECBD_0236 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034497.1 257972 R 866768 CDS YP_003034498.1 253771667 8157090 complement(259824..260249) 1 NC_012947.1 KEGG: sbc:SbBS512_E3818 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase; arsenate reductase 260249 8157090 ECBD_0237 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arsenate reductase YP_003034498.1 259824 R 866768 CDS YP_003034499.1 253771668 8157091 complement(260262..261551) 1 NC_012947.1 TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein; arsenical pump membrane protein 261551 8157091 ECBD_0238 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arsenical pump membrane protein YP_003034499.1 260262 R 866768 CDS YP_003034500.1 253771669 8157092 complement(261605..261958) 1 NC_012947.1 regulates the expression of of the arsRBC involved in resistance to arsenic; DNA-binding transcriptional repressor ArsR 261958 8157092 ECBD_0239 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor ArsR YP_003034500.1 261605 R 866768 CDS YP_003034501.1 253771670 8157093 complement(262497..262670) 1 NC_012947.1 KEGG: efe:EFER_3494 hypothetical protein; hypothetical protein 262670 8157093 ECBD_0240 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034501.1 262497 R 866768 CDS YP_003034502.1 253771671 8157094 complement(262835..264187) 1 NC_012947.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 264187 8157094 ECBD_0241 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione reductase YP_003034502.1 262835 R 866768 CDS YP_003034503.1 253771672 8157095 complement(264259..265101) 1 NC_012947.1 PFAM: protein of unknown function DUF519; KEGG: sbo:SBO_3497 hypothetical protein; hypothetical protein 265101 8157095 ECBD_0242 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034503.1 264259 R 866768 CDS YP_003034504.1 253771673 8157096 265304..267346 1 NC_012947.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase A 267346 8157096 ECBD_0243 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oligopeptidase A YP_003034504.1 265304 D 866768 CDS YP_003034505.1 253771674 8157097 267354..268106 1 NC_012947.1 predicted SAM-dependent methyltransferase; methyltransferase 268106 8157097 ECBD_0244 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase YP_003034505.1 267354 D 866768 CDS YP_003034506.1 253771675 8157098 complement(268155..269624) 1 NC_012947.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 269624 8157098 ECBD_0245 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane transporter YhiP YP_003034506.1 268155 R 866768 CDS YP_003034507.1 253771676 8157099 complement(269942..270376) 1 NC_012947.1 PFAM: UspA domain protein; KEGG: cko:CKO_04943 hypothetical protein; UspA domain protein 270376 8157099 ECBD_0246 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UspA domain protein YP_003034507.1 269942 R 866768 CDS YP_003034508.1 253771677 8159320 270767..271102 1 NC_012947.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 271102 8159320 ECBD_0247 Escherichia coli 'BL21-Gold(DE3)pLysS AG' universal stress protein UspB YP_003034508.1 270767 D 866768 CDS YP_003034509.1 253771678 8159321 complement(271346..272845) 1 NC_012947.1 PFAM: phosphate transporter; KEGG: sdy:SDY_3569 low-affinity phosphate transport; phosphate transporter 272845 8159321 ECBD_0248 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate transporter YP_003034509.1 271346 R 866768 CDS YP_003034510.1 253771679 8159322 273077..274279 1 NC_012947.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E3830 pyridine nucleotide-disulfide oxidoreductase family protein; HI0933 family protein 274279 8159322 ECBD_0249 Escherichia coli 'BL21-Gold(DE3)pLysS AG' HI0933 family protein YP_003034510.1 273077 D 866768 CDS YP_003034511.1 253771680 8159323 complement(274594..275646) 1 NC_012947.1 hypothetical protein 275646 8159323 ECBD_0250 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034511.1 274594 R 866768 CDS YP_003034512.1 253771681 8159324 276029..277636 1 NC_012947.1 KEGG: sfl:SF3505 hypothetical protein; hypothetical protein 277636 8159324 ECBD_0251 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034512.1 276029 D 866768 CDS YP_003034513.1 253771682 8159325 277898..279520 1 NC_012947.1 KEGG: sfx:S4259 hypothetical protein; hypothetical protein 279520 8159325 ECBD_0252 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034513.1 277898 D 866768 CDS YP_003034514.1 253771683 8159326 279886..280953 1 NC_012947.1 PFAM: secretion protein HlyD; KEGG: sfv:SFV_3488 hypothetical protein; secretion protein HlyD 280953 8159326 ECBD_0253 Escherichia coli 'BL21-Gold(DE3)pLysS AG' secretion protein HlyD YP_003034514.1 279886 D 866768 CDS YP_003034515.1 253771684 8159327 280950..283685 1 NC_012947.1 PFAM: ABC transporter; ABC-2 type transporter; SMART: ATPase AAA; KEGG: sbc:SbBS512_E3836 ABC transporter ATP binding protein; ABC transporter 283685 8159327 ECBD_0254 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003034515.1 280950 D 866768 CDS YP_003034516.1 253771685 8159328 283685..284809 1 NC_012947.1 PFAM: ABC transporter; KEGG: sfv:SFV_3486 transporter; ABC transporter 284809 8159328 ECBD_0255 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003034516.1 283685 D 866768 CDS YP_003034517.1 253771686 8159329 complement(284974..286110) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 receptor; transposase IS4 family protein 286110 8159329 ECBD_0256 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003034517.1 284974 R 866768 CDS YP_003034518.1 253771687 8159330 complement(286356..286601) 1 NC_012947.1 KEGG: sei:SPC_1578 hypothetical protein; hypothetical protein 286601 8159330 ECBD_0257 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034518.1 286356 R 866768 CDS YP_003034519.1 253771688 8159331 complement(286706..287089) 1 NC_012947.1 hypothetical protein 287089 8159331 ECBD_0258 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034519.1 286706 R 866768 CDS YP_003034520.1 253771689 8159332 complement(287061..291296) 1 NC_012947.1 TIGRFAM: hypothetical protein; PFAM: RHS protein; YD repeat-containing protein; hypothetical protein 291296 8159332 ECBD_0259 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034520.1 287061 R 866768 CDS YP_003034521.1 253771690 8159333 complement(291499..291900) 1 NC_012947.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 291900 8159333 ECBD_0260 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nickel responsive regulator YP_003034521.1 291499 R 866768 CDS YP_003034522.1 253771691 8159334 complement(291906..292712) 1 NC_012947.1 with NikABCD is involved with nickel transport into the cell; nickel transporter ATP-binding protein NikE 292712 nikE 8159334 nikE Escherichia coli 'BL21-Gold(DE3)pLysS AG' nickel transporter ATP-binding protein NikE YP_003034522.1 291906 R 866768 CDS YP_003034523.1 253771692 8159335 complement(292709..293473) 1 NC_012947.1 with NikABCE is involved in nickel transport into the cell; nickel transporter ATP-binding protein NikD 293473 nikD 8159335 nikD Escherichia coli 'BL21-Gold(DE3)pLysS AG' nickel transporter ATP-binding protein NikD YP_003034523.1 292709 R 866768 CDS YP_003034524.1 253771693 8159336 complement(293473..294306) 1 NC_012947.1 with NikABDE is involved in nickel transport into the cell; nickel transporter permease NikC 294306 nikC 8159336 nikC Escherichia coli 'BL21-Gold(DE3)pLysS AG' nickel transporter permease NikC YP_003034524.1 293473 R 866768 CDS YP_003034525.1 253771694 8159337 complement(294303..295247) 1 NC_012947.1 with NikACDE is involved in nickel transport into the cell; nickel transporter permease NikB 295247 8159337 ECBD_0264 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nickel transporter permease NikB YP_003034525.1 294303 R 866768 CDS YP_003034526.1 253771695 8159338 complement(295247..296821) 1 NC_012947.1 TIGRFAM: nickel ABC transporter periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; KEGG: sfx:S4269 periplasmic binding protein for nickel; nickel ABC transporter periplasmic nickel-binding protein 296821 8159338 ECBD_0265 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nickel ABC transporter periplasmic nickel-binding protein YP_003034526.1 295247 R 866768 CDS YP_003034527.1 253771696 8159339 complement(296932..297519) 1 NC_012947.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sbo:SBO_3472 holo-(acyl carrier protein) synthase 2; holo-(acyl carrier protein) synthase 2 297519 8159339 ECBD_0266 Escherichia coli 'BL21-Gold(DE3)pLysS AG' holo-(acyl carrier protein) synthase 2 YP_003034527.1 296932 R 866768 CDS YP_003034528.1 253771697 8159340 complement(297574..298623) 1 NC_012947.1 PFAM: protein of unknown function UPF0118; hypothetical protein 298623 8159340 ECBD_0267 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034528.1 297574 R 866768 CDS YP_003034529.1 253771698 8159341 298722..299972 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3849 transporter major facilitator family; major facilitator superfamily transporter 299972 8159341 ECBD_0268 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily transporter YP_003034529.1 298722 D 866768 CDS YP_003034530.1 253771699 8159342 complement(299976..300533) 1 NC_012947.1 KEGG: sdy:SDY_3623 hypothetical protein; hypothetical protein 300533 8159342 ECBD_0269 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034530.1 299976 R 866768 CDS YP_003034531.1 253771700 8159343 complement(300606..301271) 1 NC_012947.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: sbc:SbBS512_E3851 hypothetical protein; hypothetical protein 301271 8159343 ECBD_0270 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034531.1 300606 R 866768 CDS YP_003034532.1 253771701 8159344 301492..301737 1 NC_012947.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 301737 8159344 ECBD_0271 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfur transfer protein SirA YP_003034532.1 301492 D 866768 CDS YP_003034533.1 253771702 8159345 complement(301839..304037) 1 NC_012947.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 304037 zntA 8159345 zntA Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc/cadmium/mercury/lead-transporting ATPase YP_003034533.1 301839 R 866768 CDS YP_003034534.1 253771703 8159346 complement(304111..304737) 1 NC_012947.1 PFAM: YhhN family protein; KEGG: sbc:SbBS512_E3854 hypothetical protein; YhhN family protein 304737 8159346 ECBD_0273 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YhhN family protein YP_003034534.1 304111 R 866768 CDS YP_003034535.1 253771704 8159347 304878..305237 1 NC_012947.1 KEGG: sfv:SFV_3470 receptor; receptor 305237 8159347 ECBD_0274 Escherichia coli 'BL21-Gold(DE3)pLysS AG' receptor YP_003034535.1 304878 D 866768 CDS YP_003034536.1 253771705 8159348 complement(305240..305509) 1 NC_012947.1 PFAM: protein of unknown function DUF1145; KEGG: sdy:SDY_3617 hypothetical protein; hypothetical protein 305509 8159348 ECBD_0275 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034536.1 305240 R 866768 CDS YP_003034537.1 253771706 8159349 complement(305499..306095) 1 NC_012947.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 306095 rsmD 8159349 rsmD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 16S rRNA m(2)G966-methyltransferase YP_003034537.1 305499 R 866768 CDS YP_003034538.1 253771707 8159350 306245..307738 1 NC_012947.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY 307738 8159350 ECBD_0277 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsY YP_003034538.1 306245 D 866768 CDS YP_003034539.1 253771708 8159351 307741..308409 1 NC_012947.1 ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE 308409 8159351 ECBD_0278 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsE YP_003034539.1 307741 D 866768 CDS YP_003034540.1 253771709 8159352 308402..309460 1 NC_012947.1 ABC transporter membrane protein; cell division protein FtsX 309460 ftsX 8159352 ftsX Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsX YP_003034540.1 308402 D 866768 CDS YP_003034541.1 253771710 8159353 309705..310559 1 NC_012947.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 310559 8159353 ECBD_0280 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA polymerase factor sigma-32 YP_003034541.1 309705 D 866768 CDS YP_003034542.1 253771711 8159354 310830..311933 1 NC_012947.1 PFAM: extracellular ligand-binding receptor; KEGG: sfv:SFV_3463 Leu/Ile/Val-binding protein precursor; extracellular ligand-binding receptor 311933 8159354 ECBD_0281 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular ligand-binding receptor YP_003034542.1 310830 D 866768 CDS YP_003034543.1 253771712 8159355 complement(312121..312504) 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_3610 hypothetical protein; GCN5-related N-acetyltransferase 312504 8159355 ECBD_0282 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GCN5-related N-acetyltransferase YP_003034543.1 312121 R 866768 CDS YP_003034544.1 253771713 8159356 312928..314037 1 NC_012947.1 PFAM: extracellular ligand-binding receptor; KEGG: sbc:SbBS512_E3864 high-affinity branched-chain amino acid ABC transporter periplasmic leucine-specific-binding protein LivK; extracellular ligand-binding receptor 314037 8159356 ECBD_0283 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular ligand-binding receptor YP_003034544.1 312928 D 866768 CDS YP_003034545.1 253771714 8159357 314085..315011 1 NC_012947.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH 315011 8159357 ECBD_0284 Escherichia coli 'BL21-Gold(DE3)pLysS AG' branched-chain amino acid transporter permease subunit LivH YP_003034545.1 314085 D 866768 CDS YP_003034546.1 253771715 8159358 315008..316285 1 NC_012947.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 316285 livM 8159358 livM Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucine/isoleucine/valine transporter permease subunit YP_003034546.1 315008 D 866768 CDS YP_003034547.1 253771716 8159359 316282..317049 1 NC_012947.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 317049 livG 8159359 livG Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucine/isoleucine/valine transporter ATP-binding subunit YP_003034547.1 316282 D 866768 CDS YP_003034548.1 253771717 8159360 317051..317764 1 NC_012947.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transporter; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 317764 livF 8159360 livF Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucine/isoleucine/valine transporter ATP-binding subunit YP_003034548.1 317051 D 866768 CDS YP_003034549.1 253771718 8159361 318163..319479 1 NC_012947.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 319479 8159361 ECBD_0288 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate transporter periplasmic binding protein YP_003034549.1 318163 D 866768 CDS YP_003034550.1 253771719 8159362 319577..320464 1 NC_012947.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease 320464 8159362 ECBD_0289 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate transporter permease YP_003034550.1 319577 D 866768 CDS YP_003034551.1 253771720 8159363 320461..321306 1 NC_012947.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 321306 8159363 ECBD_0290 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate transporter membrane protein YP_003034551.1 320461 D 866768 CDS YP_003034552.1 253771721 8159364 321308..322378 1 NC_012947.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 322378 ugpC 8159364 ugpC Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate transporter ATP-binding subunit YP_003034552.1 321308 D 866768 CDS YP_003034553.1 253771722 8159365 322375..323118 1 NC_012947.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; cytoplasmic glycerophosphodiester phosphodiesterase 323118 ugpQ 8159365 ugpQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic glycerophosphodiester phosphodiesterase YP_003034553.1 322375 D 866768 CDS YP_003034554.1 253771723 8159366 complement(323105..323545) 1 NC_012947.1 KEGG: sfl:SF3465 hypothetical protein; hypothetical protein 323545 8159366 ECBD_0293 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034554.1 323105 R 866768 CDS YP_003034555.1 253771724 8159367 323665..325407 1 NC_012947.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase 325407 ggt 8159367 ggt Escherichia coli 'BL21-Gold(DE3)pLysS AG' gamma-glutamyltranspeptidase YP_003034555.1 323665 D 866768 CDS YP_003034556.1 253771725 8159368 complement(325445..325729) 1 NC_012947.1 KEGG: sbc:SbBS512_E3877 hypothetical protein; hypothetical protein 325729 8159368 ECBD_0295 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034556.1 325445 R 866768 CDS YP_003034557.1 253771726 8159369 complement(325929..326084) 1 NC_012947.1 hypothetical protein 326084 8159369 ECBD_0296 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034557.1 325929 R 866768 CDS YP_003034558.1 253771727 8159371 complement(326730..327005) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 327005 8159371 ECBD_0298 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003034558.1 326730 R 866768 CDS YP_003034559.1 253771728 8159372 complement(327034..327450) 1 NC_012947.1 KEGG: elf:LF82_3698 uncharacterized protein YrhA; hypothetical protein 327450 8159372 ECBD_0299 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034559.1 327034 R 866768 CDS YP_003034560.1 253771729 8159373 complement(327447..328625) 1 NC_012947.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; HNH endonuclease; KEGG: sbc:SbBS512_E3883 HNH endonuclease domain protein; type VI secretion system effector, Hcp1 family 328625 8159373 ECBD_0300 Escherichia coli 'BL21-Gold(DE3)pLysS AG' type VI secretion system effector, Hcp1 family YP_003034560.1 327447 R 866768 CDS YP_003034561.1 253771730 8159374 complement(328862..329350) 1 NC_012947.1 YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 329350 8159374 ECBD_0301 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyltransferase YhhY YP_003034561.1 328862 R 866768 CDS YP_003034562.1 253771731 8159375 329683..330720 1 NC_012947.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; dehydrogenase 330720 8159375 ECBD_0302 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dehydrogenase YP_003034562.1 329683 D 866768 CDS YP_003034563.1 253771732 8159376 330843..331538 1 NC_012947.1 PFAM: pirin; Cupin 2 conserved barrel domain protein; KEGG: sbc:SbBS512_E3886 pirin family protein; pirin 331538 8159376 ECBD_0303 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pirin YP_003034563.1 330843 D 866768 CDS YP_003034564.1 253771733 8159377 complement(331535..331684) 1 NC_012947.1 hypothetical protein 331684 8159377 ECBD_0304 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034564.1 331535 R 866768 CDS YP_003034565.1 253771734 8159378 331762..332757 1 NC_012947.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: efe:EFER_3414 DNA-binding transcriptional repressor; LacI family transcriptional regulator 332757 8159378 ECBD_0305 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LacI family transcriptional regulator YP_003034565.1 331762 D 866768 CDS YP_003034566.1 253771735 8159379 332935..333423 1 NC_012947.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 1 333423 gntK 8159379 gntK Escherichia coli 'BL21-Gold(DE3)pLysS AG' gluconate kinase 1 YP_003034566.1 332935 D 866768 CDS YP_003034567.1 253771736 8159380 333427..334767 1 NC_012947.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; citrate transporter; KEGG: sdy:SDY_3587 gluconate transporter low affinity GNT 1 system; low affinity gluconate transporter 334767 8159380 ECBD_0307 Escherichia coli 'BL21-Gold(DE3)pLysS AG' low affinity gluconate transporter YP_003034567.1 333427 D 866768 CDS YP_003034568.1 253771737 8159381 complement(334824..335417) 1 NC_012947.1 YhgN; Ec0197; hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate; seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group; shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP, dCTP, dGTP, and dTTP); dITP- and XTP- hydrolase 335417 8159381 ECBD_0308 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dITP- and XTP- hydrolase YP_003034568.1 334824 R 866768 CDS YP_003034569.1 253771738 8159382 335610..336713 1 NC_012947.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 336713 8159382 ECBD_0309 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aspartate-semialdehyde dehydrogenase YP_003034569.1 335610 D 866768 CDS YP_003034570.1 253771739 8159383 336986..339172 1 NC_012947.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 339172 8159383 ECBD_0310 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycogen branching enzyme YP_003034570.1 336986 D 866768 CDS YP_003034571.1 253771740 8159384 339169..341142 1 NC_012947.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching enzyme 341142 8159384 ECBD_0311 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycogen debranching enzyme YP_003034571.1 339169 D 866768 CDS YP_003034572.1 253771741 8159385 341160..342455 1 NC_012947.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 342455 glgC 8159385 glgC Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucose-1-phosphate adenylyltransferase YP_003034572.1 341160 D 866768 CDS YP_003034573.1 253771742 8159386 342455..343888 1 NC_012947.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 343888 glgA 8159386 glgA Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycogen synthase YP_003034573.1 342455 D 866768 CDS YP_003034574.1 253771743 8159387 343907..346354 1 NC_012947.1 KEGG: sfv:SFV_3437 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 346354 8159387 ECBD_0314 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycogen/starch/alpha-glucan phosphorylase YP_003034574.1 343907 D 866768 CDS YP_003034575.1 253771744 8159388 346483..346764 1 NC_012947.1 KEGG: sfv:SFV_3434 hypothetical protein; hypothetical protein 346764 8159388 ECBD_0315 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034575.1 346483 D 866768 CDS YP_003034576.1 253771745 8159389 complement(346970..348475) 1 NC_012947.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 348475 glpD 8159389 glpD Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate dehydrogenase YP_003034576.1 346970 R 866768 CDS YP_003034577.1 253771746 8159390 348665..348991 1 NC_012947.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 348991 glpE 8159390 glpE Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiosulfate sulfurtransferase YP_003034577.1 348665 D 866768 CDS YP_003034578.1 253771747 8159391 349036..349866 1 NC_012947.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 349866 8159391 ECBD_0318 Escherichia coli 'BL21-Gold(DE3)pLysS AG' intramembrane serine protease GlpG YP_003034578.1 349036 D 866768 CDS YP_003034579.1 253771748 8159392 349883..350641 1 NC_012947.1 represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR 350641 8159392 ECBD_0319 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor GlpR YP_003034579.1 349883 D 866768 CDS YP_003034580.1 253771749 8159393 complement(350623..352221) 1 NC_012947.1 PFAM: regulator of RNA terminal phosphate cyclase; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfv:SFV_3429 2-component regulator; Sigma 54 interacting domain protein 352221 8159393 ECBD_0320 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Sigma 54 interacting domain protein YP_003034580.1 350623 R 866768 CDS YP_003034581.1 253771750 8159394 352410..353636 1 NC_012947.1 PFAM: protein of unknown function UPF0027; hypothetical protein 353636 8159394 ECBD_0321 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034581.1 352410 D 866768 CDS YP_003034582.1 253771751 8159395 353640..354656 1 NC_012947.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 354656 8159395 ECBD_0322 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA 3'-terminal-phosphate cyclase YP_003034582.1 353640 D 866768 CDS YP_003034583.1 253771752 8159398 complement(356294..357499) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: seh:SeHA_C4724 tetracycline resistance protein, class B; major facilitator superfamily MFS_1 357499 8159398 ECBD_0325 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003034583.1 356294 R 866768 CDS YP_003034584.1 253771753 8159399 357581..358204 1 NC_012947.1 PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: apa:APP7_1823 tetracycline repressor protein TetR; TetR family transcriptional regulator 358204 8159399 ECBD_0326 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TetR family transcriptional regulator YP_003034584.1 357581 D 866768 CDS YP_003034585.1 253771754 8158908 360950..363343 1 NC_012947.1 KEGG: ssn:SSON_3549 maltodextrin phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 363343 8158908 ECBD_0328 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycogen/starch/alpha-glucan phosphorylase YP_003034585.1 360950 D 866768 CDS YP_003034586.1 253771755 8155935 363353..365437 1 NC_012947.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 365437 malQ 8155935 malQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-alpha-glucanotransferase YP_003034586.1 363353 D 866768 CDS YP_003034587.1 253771756 8155936 complement(365548..366864) 1 NC_012947.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; citrate transporter; KEGG: sbc:SbBS512_E3796 high-affinity gluconate transporter; gluconate transporter 366864 8155936 ECBD_0330 Escherichia coli 'BL21-Gold(DE3)pLysS AG' gluconate transporter YP_003034587.1 365548 R 866768 CDS YP_003034588.1 253771757 8155937 complement(367224..367799) 1 NC_012947.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 367799 8155937 ECBD_0331 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA uptake protein YP_003034588.1 367224 R 866768 CDS YP_003034589.1 253771758 8155938 complement(367858..368541) 1 NC_012947.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 368541 8155938 ECBD_0332 Escherichia coli 'BL21-Gold(DE3)pLysS AG' gluconate periplasmic binding protein YP_003034589.1 367858 R 866768 CDS YP_003034590.1 253771759 8155939 368579..369349 1 NC_012947.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH 369349 8155939 ECBD_0333 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxylesterase BioH YP_003034590.1 368579 D 866768 CDS YP_003034591.1 253771760 8155940 complement(369378..370256) 1 NC_012947.1 PFAM: transposase YhgA family protein; KEGG: sbc:SbBS512_E3792 transposase, YhgA; hypothetical protein 370256 8155940 ECBD_0334 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034591.1 369378 R 866768 CDS YP_003034592.1 253771761 8155941 complement(370459..370695) 1 NC_012947.1 PFAM: protein of unknown function DUF1920; KEGG: sdy:SDY_3666 hypothetical protein; hypothetical protein 370695 8155941 ECBD_0335 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034592.1 370459 R 866768 CDS YP_003034593.1 253771762 8155942 complement(370695..373016) 1 NC_012947.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transporter B 373016 feoB 8155942 feoB Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferrous iron transporter B YP_003034593.1 370695 R 866768 CDS YP_003034594.1 253771763 8155943 complement(373033..373260) 1 NC_012947.1 PFAM: FeoA family protein; KEGG: sdy:SDY_3668 ferrous iron transporter A; ferrous iron transporter A 373260 feoA 8155943 feoA Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferrous iron transporter A YP_003034594.1 373033 R 866768 CDS YP_003034595.1 253771764 8155944 complement(373717..376038) 1 NC_012947.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: sbc:SbBS512_E3786 transcriptional accessory protein; RNA binding S1 domain protein 376038 8155944 ECBD_0338 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA binding S1 domain protein YP_003034595.1 373717 R 866768 CDS YP_003034596.1 253771765 8155945 complement(376135..376611) 1 NC_012947.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 376611 greB 8155945 greB Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcription elongation factor GreB YP_003034596.1 376135 R 866768 CDS YP_003034597.1 253771766 8155946 376839..377558 1 NC_012947.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 377558 ompR 8155946 ompR Escherichia coli 'BL21-Gold(DE3)pLysS AG' osmolarity response regulator YP_003034597.1 376839 D 866768 CDS YP_003034598.1 253771767 8155947 377555..378907 1 NC_012947.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 378907 envZ 8155947 envZ Escherichia coli 'BL21-Gold(DE3)pLysS AG' osmolarity sensor protein YP_003034598.1 377555 D 866768 CDS YP_003034599.1 253771768 8155948 complement(378983..380605) 1 NC_012947.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 380605 8155948 ECBD_0342 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoenolpyruvate carboxykinase YP_003034599.1 378983 R 866768 CDS YP_003034600.1 253771769 8155949 380850..380978 1 NC_012947.1 KEGG: sbc:SbBS512_E3781 hypothetical protein; hypothetical protein 380978 8155949 ECBD_0343 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034600.1 380850 D 866768 CDS YP_003034601.1 253771770 8155950 380984..382708 1 NC_012947.1 KEGG: sbc:SbBS512_E3780 hypothetical protein; hypothetical protein 382708 8155950 ECBD_0344 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034601.1 380984 D 866768 CDS YP_003034602.1 253771771 8155951 complement(382771..383649) 1 NC_012947.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 383649 hslO 8155951 hslO Escherichia coli 'BL21-Gold(DE3)pLysS AG' Hsp33-like chaperonin YP_003034602.1 382771 R 866768 CDS YP_003034603.1 253771772 8155952 complement(383674..384075) 1 NC_012947.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: sdy:SDY_3678 ribosome-associated heat shock protein HSP15; ribosome-associated heat shock protein Hsp15 384075 8155952 ECBD_0346 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosome-associated heat shock protein Hsp15 YP_003034603.1 383674 R 866768 CDS YP_003034604.1 253771773 8155953 complement(384086..384754) 1 NC_012947.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: sfv:SFV_3404 phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3 384754 8155953 ECBD_0347 Escherichia coli 'BL21-Gold(DE3)pLysS AG' HAD-superfamily hydrolase, subfamily IA, variant 3 YP_003034604.1 384086 R 866768 CDS YP_003034605.1 253771774 8155954 complement(384819..386942) 1 NC_012947.1 PFAM: Intracellular growth attenuator IgaA; KEGG: sfv:SFV_3403 dehydrogenase; Intracellular growth attenuator IgaA 386942 8155954 ECBD_0348 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Intracellular growth attenuator IgaA YP_003034605.1 384819 R 866768 CDS YP_003034606.1 253771775 8155955 complement(386951..387070) 1 NC_012947.1 KEGG: sbc:SbBS512_E3775 hypothetical protein; hypothetical protein 387070 8155955 ECBD_0349 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034606.1 386951 R 866768 CDS YP_003034607.1 253771776 8155956 387274..387834 1 NC_012947.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 387834 nudE 8155956 nudE Escherichia coli 'BL21-Gold(DE3)pLysS AG' ADP-ribose diphosphatase NudE YP_003034607.1 387274 D 866768 CDS YP_003034608.1 253771777 8155957 complement(388002..390554) 1 NC_012947.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 390554 mrcA 8155957 mrcA Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidoglycan synthetase YP_003034608.1 388002 R 866768 CDS YP_003034609.1 253771778 8155958 390674..391453 1 NC_012947.1 KEGG: ssn:SSON_3526 hypothetical protein; hypothetical protein 391453 8155958 ECBD_0352 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034609.1 390674 D 866768 CDS YP_003034610.1 253771779 8155959 391453..391992 1 NC_012947.1 PFAM: fimbrial assembly family protein; KEGG: sfl:SF3412 hypothetical protein; fimbrial assembly family protein 391992 8155959 ECBD_0353 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial assembly family protein YP_003034610.1 391453 D 866768 CDS YP_003034611.1 253771780 8155960 391976..392416 1 NC_012947.1 KEGG: sfv:SFV_3398 hypothetical protein; hypothetical protein 392416 8155960 ECBD_0354 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034611.1 391976 D 866768 CDS YP_003034612.1 253771781 8155961 392406..392810 1 NC_012947.1 KEGG: sdy:SDY_3687 hypothetical protein; hypothetical protein 392810 8155961 ECBD_0355 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034612.1 392406 D 866768 CDS YP_003034613.1 253771782 8155962 392722..393960 1 NC_012947.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ 393960 hofQ 8155962 hofQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane porin HofQ YP_003034613.1 392722 D 866768 CDS YP_003034614.1 253771783 8155963 394205..394882 1 NC_012947.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 394882 aroK 8155963 aroK Escherichia coli 'BL21-Gold(DE3)pLysS AG' shikimate kinase I YP_003034614.1 394205 D 866768 CDS YP_003034615.1 253771784 8155964 394939..396027 1 NC_012947.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 396027 aroB 8155964 aroB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-dehydroquinate synthase YP_003034615.1 394939 D 866768 CDS YP_003034616.1 253771785 8155965 396119..397405 1 NC_012947.1 PFAM: sporulation domain protein; KEGG: sbo:SBO_3375 hypothetical protein; hypothetical protein 397405 8155965 ECBD_0359 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034616.1 396119 D 866768 CDS YP_003034617.1 253771786 8155966 397512..398348 1 NC_012947.1 KEGG: sbc:SbBS512_E3764 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 398348 8155966 ECBD_0360 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA adenine methylase YP_003034617.1 397512 D 866768 CDS YP_003034618.1 253771787 8155967 398366..399043 1 NC_012947.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 399043 8155967 ECBD_0361 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribulose-phosphate 3-epimerase YP_003034618.1 398366 D 866768 CDS YP_003034619.1 253771788 8155968 399036..399794 1 NC_012947.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 399794 8155968 ECBD_0362 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglycolate phosphatase YP_003034619.1 399036 D 866768 CDS YP_003034620.1 253771789 8155969 399787..400791 1 NC_012947.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 400791 8155969 ECBD_0363 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tryptophanyl-tRNA synthetase YP_003034620.1 399787 D 866768 CDS YP_003034621.1 253771790 8155970 401081..401986 1 NC_012947.1 hypothetical protein 401986 8155970 ECBD_0364 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034621.1 401081 D 866768 CDS YP_003034622.1 253771791 8155971 402003..402365 1 NC_012947.1 KEGG: sbc:SbBS512_E3759 hypothetical protein; hypothetical protein 402365 8155971 ECBD_0365 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034622.1 402003 D 866768 CDS YP_003034623.1 253771792 8155972 402449..403612 1 NC_012947.1 PFAM: alanine racemase domain protein; KEGG: sbc:SbBS512_E3758 alanine racemase family; alanine racemase domain protein 403612 8155972 ECBD_0366 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alanine racemase domain protein YP_003034623.1 402449 D 866768 CDS YP_003034624.1 253771793 8155973 403612..404838 1 NC_012947.1 PFAM: phosphopentomutase domain protein; metalloenzyme domain protein; KEGG: elf:LF82_3289 uncharacterized protein YhfW; mutase 404838 8155973 ECBD_0367 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mutase YP_003034624.1 403612 D 866768 CDS YP_003034625.1 253771794 8155974 404835..405713 1 NC_012947.1 phosphotriesterase homology protein; PhP; YhfV; member of a family of proteins related to phosphotriesterase (PTE); hydrolase 405713 8155974 ECBD_0368 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrolase YP_003034625.1 404835 D 866768 CDS YP_003034626.1 253771795 8155975 405724..406077 1 NC_012947.1 KEGG: sfv:SFV_3383 hypothetical protein; hypothetical protein 406077 8155975 ECBD_0369 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034626.1 405724 D 866768 CDS YP_003034627.1 253771796 8155976 406089..407393 1 NC_012947.1 KEGG: elf:LF82_3287 uncharacterized protein YhfT; hypothetical protein 407393 8155976 ECBD_0370 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034627.1 406089 D 866768 CDS YP_003034628.1 253771797 8155978 407934..408209 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 408209 8155978 ECBD_0372 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003034628.1 407934 D 866768 CDS YP_003034629.1 253771798 8155979 408128..408631 1 NC_012947.1 PFAM: IS1 transposase; IS1 transposase 408631 8155979 ECBD_0373 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003034629.1 408128 D 866768 CDS YP_003034630.1 253771799 8155980 complement(409420..410151) 1 NC_012947.1 may act as a transcriptional regulator of a fructoselysine-induced operon containing the yhfM, yhfN, yhfO, yhfP, yhfQ, and yhfR genes; DNA-binding transcriptional regulator FrlR 410151 8155980 ECBD_0374 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator FrlR YP_003034630.1 409420 R 866768 CDS YP_003034631.1 253771800 8155981 complement(410251..411036) 1 NC_012947.1 PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E3751 kinase, PfkB family; fructoselysine 6-kinase 411036 8155981 ECBD_0375 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructoselysine 6-kinase YP_003034631.1 410251 R 866768 CDS YP_003034632.1 253771801 8155982 complement(411033..411863) 1 NC_012947.1 YhfOP; YhfP; YhfO; FrlC; catalyzes the interconversion of fructoselysine and psicoselysine; fructoselysine 3-epimerase 411863 8155982 ECBD_0376 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructoselysine 3-epimerase YP_003034632.1 411033 R 866768 CDS YP_003034633.1 253771802 8155983 complement(411913..412935) 1 NC_012947.1 catalyzes the conversion of fructoselysine 6-phosphate to glucose 6-phosphate and lysine; fructoselysine-6-P-deglycase 412935 frlB 8155983 frlB Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructoselysine-6-P-deglycase YP_003034633.1 411913 R 866768 CDS YP_003034634.1 253771803 8155984 complement(412956..414293) 1 NC_012947.1 inner membrane protein possibly involved in fructoselysine transport; member of the flr operon; fructoselysine transporter 414293 frlA 8155984 frlA Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructoselysine transporter YP_003034634.1 412956 R 866768 CDS YP_003034635.1 253771804 8155985 complement(414588..414755) 1 NC_012947.1 KEGG: sbc:SbBS512_E3747 lipoprotein; lipoprotein 414755 8155985 ECBD_0379 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein YP_003034635.1 414588 R 866768 CDS YP_003034636.1 253771805 8155986 complement(415002..416375) 1 NC_012947.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 416375 cysG 8155986 cysG Escherichia coli 'BL21-Gold(DE3)pLysS AG' siroheme synthase YP_003034636.1 415002 R 866768 CDS YP_003034637.1 253771806 8155987 complement(416394..417200) 1 NC_012947.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 417200 8155987 ECBD_0381 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrite transporter NirC YP_003034637.1 416394 R 866768 CDS YP_003034638.1 253771807 8155988 complement(417326..417652) 1 NC_012947.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 417652 nirD 8155988 nirD Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrite reductase small subunit YP_003034638.1 417326 R 866768 CDS YP_003034639.1 253771808 8155989 complement(417649..420192) 1 NC_012947.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: sbc:SbBS512_E3741 nitrite reductase [NAD(P)H], large subunit; nitrite reductase (NAD(P)H), large subunit 420192 8155989 ECBD_0383 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrite reductase (NAD(P)H), large subunit YP_003034639.1 417649 R 866768 CDS YP_003034640.1 253771809 8155990 complement(420454..421635) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_3346 hypothetical protein; hypothetical protein 421635 8155990 ECBD_0384 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034640.1 420454 R 866768 CDS YP_003034641.1 253771810 8155991 421906..422478 1 NC_012947.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sbc:SbBS512_E3738 peptidyl-prolyl cis-trans isomerase A; peptidyl-prolyl cis-trans isomerase A (rotamase A) 422478 8155991 ECBD_0385 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidyl-prolyl cis-trans isomerase A (rotamase A) YP_003034641.1 421906 D 866768 CDS YP_003034642.1 253771811 8155992 422583..422750 1 NC_012947.1 KEGG: sfv:SFV_3368 hypothetical protein; hypothetical protein 422750 8155992 ECBD_0386 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034642.1 422583 D 866768 CDS YP_003034643.1 253771812 8155993 422740..423342 1 NC_012947.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: sfv:SFV_3367 cell filamentation protein Fic; cell filamentation protein Fic 423342 8155993 ECBD_0387 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell filamentation protein Fic YP_003034643.1 422740 D 866768 CDS YP_003034644.1 253771813 8155994 423374..423937 1 NC_012947.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 423937 8155994 ECBD_0388 Escherichia coli 'BL21-Gold(DE3)pLysS AG' para-aminobenzoate synthase component II YP_003034644.1 423374 D 866768 CDS YP_003034645.1 253771814 8155995 424023..425243 1 NC_012947.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 425243 argD 8155995 argD Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_003034645.1 424023 D 866768 CDS YP_003034646.1 253771815 8155996 complement(425310..427400) 1 NC_012947.1 TIGRFAM: integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: sbc:SbBS512_E3734 integral membrane protein, YccS/YhfK family; integral membrane protein, YccS/YhfK family 427400 8155996 ECBD_0390 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integral membrane protein, YccS/YhfK family YP_003034646.1 425310 R 866768 CDS YP_003034647.1 253771816 8155997 complement(427451..428083) 1 NC_012947.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 428083 8155997 ECBD_0391 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cAMP-regulatory protein YP_003034647.1 427451 R 866768 CDS YP_003034648.1 253771817 8155998 428385..428789 1 NC_012947.1 PFAM: OsmC family protein; KEGG: sdy:SDY_3518 hypothetical protein; hypothetical protein 428789 8155998 ECBD_0392 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034648.1 428385 D 866768 CDS YP_003034649.1 253771818 8155999 complement(428844..429713) 1 NC_012947.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: sfv:SFV_3361 phosphoribulokinase; phosphoribulokinase 429713 8155999 ECBD_0393 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribulokinase YP_003034649.1 428844 R 866768 CDS YP_003034650.1 253771819 8156000 complement(429767..429985) 1 NC_012947.1 PFAM: protein of unknown function UPF0270; KEGG: sbc:SbBS512_E3729 hypothetical protein; hypothetical protein 429985 8156000 ECBD_0394 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034650.1 429767 R 866768 CDS YP_003034651.1 253771820 8156001 complement(429979..431001) 1 NC_012947.1 PFAM: alpha/beta hydrolase fold; KEGG: ssn:SSON_3484 predicted hydrolase; hydrolase 431001 8156001 ECBD_0395 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrolase YP_003034651.1 429979 R 866768 CDS YP_003034652.1 253771821 8156002 complement(431001..432914) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ssn:SSON_3483 ABC transporter ATP-binding protein; ABC transporter ATP-binding protein 432914 8156002 ECBD_0396 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATP-binding protein YP_003034652.1 431001 R 866768 CDS YP_003034653.1 253771822 8156003 433045..433596 1 NC_012947.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 433596 8156003 ECBD_0397 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione-regulated potassium-efflux system ancillary protein KefG YP_003034653.1 433045 D 866768 CDS YP_003034654.1 253771823 8156004 433596..435401 1 NC_012947.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 435401 8156004 ECBD_0398 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione-regulated potassium-efflux system protein KefB YP_003034654.1 433596 D 866768 CDS YP_003034655.1 253771824 8156005 435411..435611 1 NC_012947.1 KEGG: sdy:SDY_3511 hypothetical protein; hypothetical protein 435611 8156005 ECBD_0399 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034655.1 435411 D 866768 CDS YP_003034656.1 253771825 8156006 435706..436296 1 NC_012947.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 436296 8156006 ECBD_0400 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FKBP-type peptidyl-prolyl cis-trans isomerase YP_003034656.1 435706 D 866768 CDS YP_003034657.1 253771826 8156007 complement(436345..436563) 1 NC_012947.1 PFAM: SlyX family protein; KEGG: sfv:SFV_3353 hypothetical protein; hypothetical protein 436563 8156007 ECBD_0401 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034657.1 436345 R 866768 CDS YP_003034658.1 253771827 8156008 436784..437596 1 NC_012947.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 437596 8156008 ECBD_0402 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FKBP-type peptidyl-prolyl cis-trans isomerase YP_003034658.1 436784 D 866768 CDS YP_003034659.1 253771828 8156009 437763..438485 1 NC_012947.1 PFAM: YheO domain protein; KEGG: sfx:S4398 hypothetical protein; YheO domain protein 438485 8156009 ECBD_0403 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YheO domain protein YP_003034659.1 437763 D 866768 CDS YP_003034660.1 253771829 8156010 438485..438871 1 NC_012947.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 438871 8156010 ECBD_0404 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfur transfer complex subunit TusD YP_003034660.1 438485 D 866768 CDS YP_003034661.1 253771830 8156011 438871..439230 1 NC_012947.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 439230 8156011 ECBD_0405 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfur relay protein TusC YP_003034661.1 438871 D 866768 CDS YP_003034662.1 253771831 8156012 439238..439525 1 NC_012947.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB 439525 8156012 ECBD_0406 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfur transfer complex subunit TusB YP_003034662.1 439238 D 866768 CDS YP_003034663.1 253771832 8156013 439651..440025 1 NC_012947.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 440025 rpsL 8156013 rpsL Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S12 YP_003034663.1 439651 D 866768 CDS YP_003034664.1 253771833 8156014 440122..440592 1 NC_012947.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 440592 8156014 ECBD_0408 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S7 YP_003034664.1 440122 D 866768 CDS YP_003034665.1 253771834 8156015 440689..442803 1 NC_012947.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 442803 8156015 ECBD_0409 Escherichia coli 'BL21-Gold(DE3)pLysS AG' elongation factor G YP_003034665.1 440689 D 866768 CDS YP_003034666.1 253771835 8159968 442874..444058 1 NC_012947.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 444058 8159968 ECBD_0410 Escherichia coli 'BL21-Gold(DE3)pLysS AG' elongation factor Tu YP_003034666.1 442874 D 866768 CDS YP_003034667.1 253771836 8159401 444107..444265 1 NC_012947.1 hypothetical protein 444265 8159401 ECBD_0411 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034667.1 444107 D 866768 CDS YP_003034668.1 253771837 8159402 444350..446410 1 NC_012947.1 KEGG: elf:LF82_0302 bifunctional chitinase/lysozyme; PFAM: carbohydrate-binding family V/XII; SMART: carbohydrate-binding family V/XII; Lysozyme 446410 8159402 ECBD_0412 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lysozyme YP_003034668.1 444350 D 866768 CDS YP_003034669.1 253771838 8159403 446413..446529 1 NC_012947.1 hypothetical protein 446529 8159403 ECBD_0413 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034669.1 446413 D 866768 CDS YP_003034670.1 253771839 8159404 446579..446773 1 NC_012947.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: elf:LF82_0223 bacterioferritin-associated ferredoxin; bacterioferritin-associated ferredoxin 446773 8159404 ECBD_0414 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bacterioferritin-associated ferredoxin YP_003034670.1 446579 D 866768 CDS YP_003034671.1 253771840 8159405 446845..447321 1 NC_012947.1 iron storage protein; bacterioferritin 447321 8159405 ECBD_0415 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bacterioferritin YP_003034671.1 446845 D 866768 CDS YP_003034672.1 253771841 8159406 complement(447350..448027) 1 NC_012947.1 PFAM: peptidase A24A prepilin type IV; KEGG: kpn:KPN_00149 pullulanase Q protein; prepilin peptidase 448027 8159406 ECBD_0416 Escherichia coli 'BL21-Gold(DE3)pLysS AG' prepilin peptidase YP_003034672.1 447350 R 866768 CDS YP_003034673.1 253771842 8159407 complement(448027..448488) 1 NC_012947.1 PFAM: general secretion pathway M protein; KEGG: tau:Tola_0358 general secretion pathway M protein; general secretion pathway protein M 448488 8159407 ECBD_0417 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein M YP_003034673.1 448027 R 866768 CDS YP_003034674.1 253771843 8159408 complement(448485..449648) 1 NC_012947.1 TIGRFAM: general secretion pathway protein L; PFAM: general secretion pathway L; KEGG: elf:LF82_0949 general secretion pathway protein L; general secretion pathway protein L 449648 8159408 ECBD_0418 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein L YP_003034674.1 448485 R 866768 CDS YP_003034675.1 253771844 8159409 complement(449663..450646) 1 NC_012947.1 PFAM: general secretion pathway protein K; KEGG: elf:LF82_0948 general secretion pathway protein K; general secretion pathway protein K 450646 8159409 ECBD_0419 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein K YP_003034675.1 449663 R 866768 CDS YP_003034676.1 253771845 8159410 complement(450639..451226) 1 NC_012947.1 TIGRFAM: general secretion pathway protein J; KEGG: elf:LF82_0947 general secretion pathway protein J; general secretion pathway protein J 451226 8159410 ECBD_0420 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein J YP_003034676.1 450639 R 866768 CDS YP_003034677.1 253771846 8159411 complement(451219..451596) 1 NC_012947.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: elf:LF82_0946 general secretion pathway protein I; general secretion pathway protein I 451596 8159411 ECBD_0421 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein I YP_003034677.1 451219 R 866768 CDS YP_003034678.1 253771847 8159412 complement(451593..452102) 1 NC_012947.1 TIGRFAM: general secretion pathway protein H; KEGG: elf:LF82_0945 general secretion pathway protein H; general secretion pathway protein H 452102 8159412 ECBD_0422 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein H YP_003034678.1 451593 R 866768 CDS YP_003034679.1 253771848 8159413 complement(452110..452547) 1 NC_012947.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: elf:LF82_0944 general secretion pathway protein G; general secretion pathway protein G 452547 8159413 ECBD_0423 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein G YP_003034679.1 452110 R 866768 CDS YP_003034680.1 253771849 8159414 complement(452557..453753) 1 NC_012947.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; general secretion pathway protein F 453753 8159414 ECBD_0424 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein F YP_003034680.1 452557 R 866768 CDS YP_003034681.1 253771850 8159415 complement(453750..455231) 1 NC_012947.1 KEGG: elf:LF82_0942 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: ATPase AAA; general secretory pathway protein E 455231 8159415 ECBD_0425 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretory pathway protein E YP_003034681.1 453750 R 866768 CDS YP_003034682.1 253771851 8159416 complement(455241..456257) 1 NC_012947.1 PFAM: type II and III secretion system protein; NolW domain protein; KEGG: elf:LF82_0941 general secretion pathway protein D; type II and III secretion system protein 456257 8159416 ECBD_0426 Escherichia coli 'BL21-Gold(DE3)pLysS AG' type II and III secretion system protein YP_003034682.1 455241 R 866768 CDS YP_003034683.1 253771852 8159417 complement(456241..457056) 1 NC_012947.1 TIGRFAM: general secretion pathway protein C; KEGG: elf:LF82_0940 general secretion pathway protein C; general secretion pathway protein C 457056 8159417 ECBD_0427 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein C YP_003034683.1 456241 R 866768 CDS YP_003034684.1 253771853 8159418 457236..458705 1 NC_012947.1 PFAM: peptidoglycan-binding protein; KEGG: elf:LF82_0938 general secretion pathway protein A; peptidoglycan-binding protein 458705 8159418 ECBD_0428 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidoglycan-binding protein YP_003034684.1 457236 D 866768 CDS YP_003034685.1 253771854 8159419 458707..459126 1 NC_012947.1 calcium-binding protein that may be required for the initiation of chromosome replication; chromosome replication protein PioO 459126 8159419 ECBD_0429 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome replication protein PioO YP_003034685.1 458707 D 866768 CDS YP_003034686.1 253771855 8159420 459364..459675 1 NC_012947.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 459675 rpsJ 8159420 rpsJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S10 YP_003034686.1 459364 D 866768 CDS YP_003034687.1 253771856 8159421 459708..460337 1 NC_012947.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 460337 rplC 8159421 rplC Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L3 YP_003034687.1 459708 D 866768 CDS YP_003034688.1 253771857 8159422 460348..460953 1 NC_012947.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 460953 rplD 8159422 rplD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L4 YP_003034688.1 460348 D 866768 CDS YP_003034689.1 253771858 8159423 460950..461252 1 NC_012947.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 461252 rplW 8159423 rplW Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L23 YP_003034689.1 460950 D 866768 CDS YP_003034690.1 253771859 8159424 461270..462091 1 NC_012947.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 462091 rplB 8159424 rplB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L2 YP_003034690.1 461270 D 866768 CDS YP_003034691.1 253771860 8159425 462108..462386 1 NC_012947.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 462386 rpsS 8159425 rpsS Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S19 YP_003034691.1 462108 D 866768 CDS YP_003034692.1 253771861 8159426 462401..462733 1 NC_012947.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 462733 rplV 8159426 rplV Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L22 YP_003034692.1 462401 D 866768 CDS YP_003034693.1 253771862 8159427 462751..463452 1 NC_012947.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 463452 rpsC 8159427 rpsC Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S3 YP_003034693.1 462751 D 866768 CDS YP_003034694.1 253771863 8159428 463465..463875 1 NC_012947.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 463875 rplP 8159428 rplP Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L16 YP_003034694.1 463465 D 866768 CDS YP_003034695.1 253771864 8159429 463875..464066 1 NC_012947.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 464066 8159429 ECBD_0439 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L29 YP_003034695.1 463875 D 866768 CDS YP_003034696.1 253771865 8159430 464066..464320 1 NC_012947.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 464320 rpsQ 8159430 rpsQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S17 YP_003034696.1 464066 D 866768 CDS YP_003034697.1 253771866 8159431 464485..464856 1 NC_012947.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 464856 rplN 8159431 rplN Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L14 YP_003034697.1 464485 D 866768 CDS YP_003034698.1 253771867 8159432 464867..465181 1 NC_012947.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 465181 rplX 8159432 rplX Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L24 YP_003034698.1 464867 D 866768 CDS YP_003034699.1 253771868 8159433 465196..465735 1 NC_012947.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 465735 rplE 8159433 rplE Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L5 YP_003034699.1 465196 D 866768 CDS YP_003034700.1 253771869 8159434 465750..466055 1 NC_012947.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 466055 rpsN 8159434 rpsN Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S14 YP_003034700.1 465750 D 866768 CDS YP_003034701.1 253771870 8159435 466089..466481 1 NC_012947.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 466481 rpsH 8159435 rpsH Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S8 YP_003034701.1 466089 D 866768 CDS YP_003034702.1 253771871 8159436 466494..467027 1 NC_012947.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 467027 rplF 8159436 rplF Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L6 YP_003034702.1 466494 D 866768 CDS YP_003034703.1 253771872 8159437 467037..467390 1 NC_012947.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 467390 rplR 8159437 rplR Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L18 YP_003034703.1 467037 D 866768 CDS YP_003034704.1 253771873 8159438 467405..467908 1 NC_012947.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 467908 rpsE 8159438 rpsE Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S5 YP_003034704.1 467405 D 866768 CDS YP_003034705.1 253771874 8159439 467912..468091 1 NC_012947.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 468091 rpmD 8159439 rpmD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L30 YP_003034705.1 467912 D 866768 CDS YP_003034706.1 253771875 8159440 468095..468529 1 NC_012947.1 late assembly protein; 50S ribosomal protein L15 468529 rplO 8159440 rplO Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L15 YP_003034706.1 468095 D 866768 CDS YP_003034707.1 253771876 8159441 468537..469868 1 NC_012947.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 469868 secY 8159441 secY Escherichia coli 'BL21-Gold(DE3)pLysS AG' preprotein translocase subunit SecY YP_003034707.1 468537 D 866768 CDS YP_003034708.1 253771877 8159442 469900..470016 1 NC_012947.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 470016 rpmJ 8159442 rpmJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L36 YP_003034708.1 469900 D 866768 CDS YP_003034709.1 253771878 8159443 470163..470519 1 NC_012947.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 470519 rpsM 8159443 rpsM Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S13 YP_003034709.1 470163 D 866768 CDS YP_003034710.1 253771879 8159444 470536..470925 1 NC_012947.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 470925 8159444 ECBD_0454 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S11 YP_003034710.1 470536 D 866768 CDS YP_003034711.1 253771880 8159445 470959..471579 1 NC_012947.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 471579 rpsD 8159445 rpsD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S4 YP_003034711.1 470959 D 866768 CDS YP_003034712.1 253771881 8159446 471605..472594 1 NC_012947.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 472594 8159446 ECBD_0456 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-directed RNA polymerase subunit alpha YP_003034712.1 471605 D 866768 CDS YP_003034713.1 253771882 8159447 472635..473018 1 NC_012947.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 473018 rplQ 8159447 rplQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L17 YP_003034713.1 472635 D 866768 CDS YP_003034714.1 253771883 8159448 473125..473493 1 NC_012947.1 KEGG: ssn:SSON_3434 hypothetical protein; hypothetical protein 473493 8159448 ECBD_0458 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034714.1 473125 D 866768 CDS YP_003034715.1 253771884 8159449 473504..473929 1 NC_012947.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 473929 zntR 8159449 zntR Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc-responsive transcriptional regulator YP_003034715.1 473504 D 866768 CDS YP_003034716.1 253771885 8159450 473985..474203 1 NC_012947.1 PFAM: protein of unknown function DUF331; KEGG: ssn:SSON_3432 hypothetical protein; hypothetical protein 474203 8159450 ECBD_0460 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034716.1 473985 D 866768 CDS YP_003034717.1 253771886 8159451 complement(474200..474610) 1 NC_012947.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 474610 mscL 8159451 mscL Escherichia coli 'BL21-Gold(DE3)pLysS AG' large-conductance mechanosensitive channel YP_003034717.1 474200 R 866768 CDS YP_003034718.1 253771887 8159452 complement(474740..476116) 1 NC_012947.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 476116 trkA 8159452 trkA Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium transporter peripheral membrane component YP_003034718.1 474740 R 866768 CDS YP_003034719.1 253771888 8159453 complement(476138..477427) 1 NC_012947.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B 477427 8159453 ECBD_0463 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 16S rRNA methyltransferase B YP_003034719.1 476138 R 866768 CDS YP_003034720.1 253771889 8159454 complement(477473..478420) 1 NC_012947.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 478420 fmt 8159454 fmt Escherichia coli 'BL21-Gold(DE3)pLysS AG' methionyl-tRNA formyltransferase YP_003034720.1 477473 R 866768 CDS YP_003034721.1 253771890 8159455 complement(478435..478944) 1 NC_012947.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 478944 def 8159455 def Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide deformylase YP_003034721.1 478435 R 866768 CDS YP_003034722.1 253771891 8159456 479074..480198 1 NC_012947.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: elf:LF82_2142 protein smf; DNA protecting protein DprA 480198 8159456 ECBD_0466 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA protecting protein DprA YP_003034722.1 479074 D 866768 CDS YP_003034723.1 253771892 8159457 480170..480643 1 NC_012947.1 PFAM: protein of unknown function DUF494; KEGG: sfv:SFV_3304 hypothetical protein; hypothetical protein 480643 8159457 ECBD_0467 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034723.1 480170 D 866768 CDS YP_003034724.1 253771893 8159458 480672..481214 1 NC_012947.1 PFAM: DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase type IA zn finger domain protein 481214 8159458 ECBD_0468 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA topoisomerase type IA zn finger domain protein YP_003034724.1 480672 D 866768 CDS YP_003034725.1 253771894 8159459 481219..481791 1 NC_012947.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor 481791 8159459 ECBD_0469 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosome maturation factor YP_003034725.1 481219 D 866768 CDS YP_003034726.1 253771895 8159460 481796..482614 1 NC_012947.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 482614 aroE 8159460 aroE Escherichia coli 'BL21-Gold(DE3)pLysS AG' shikimate 5-dehydrogenase YP_003034726.1 481796 D 866768 CDS YP_003034727.1 253771896 8159461 482611..482868 1 NC_012947.1 PFAM: protein of unknown function DUF1488; KEGG: sfv:SFV_3301 hypothetical protein; hypothetical protein 482868 8159461 ECBD_0471 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034727.1 482611 D 866768 CDS YP_003034728.1 253771897 8159462 complement(482844..483398) 1 NC_012947.1 KEGG: sfv:SFV_3300 transferase; transferase 483398 8159462 ECBD_0472 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transferase YP_003034728.1 482844 R 866768 CDS YP_003034729.1 253771898 8159470 complement(489453..490211) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 490211 8159470 ECBD_0473 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003034729.1 489453 R 866768 CDS YP_003034730.1 253771899 8159471 complement(490219..491322) 1 NC_012947.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sdy:SDY_3447 transporter permease; polar amino acid ABC transporter permease 491322 8159471 ECBD_0474 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polar amino acid ABC transporter permease YP_003034730.1 490219 R 866768 CDS YP_003034731.1 253771900 8159472 complement(491332..492513) 1 NC_012947.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; polar amino acid ABC transporter permease 492513 8159472 ECBD_0475 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polar amino acid ABC transporter permease YP_003034731.1 491332 R 866768 CDS YP_003034732.1 253771901 8159473 complement(492581..493606) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: elf:LF82_3270 amino-acid ABC transporter-binding protein YhdW; extracellular solute-binding protein family 3 493606 8159473 ECBD_0476 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 3 YP_003034732.1 492581 R 866768 CDS YP_003034733.1 253771902 8159474 complement(493635..493811) 1 NC_012947.1 KEGG: sfv:SFV_3289 IS1 encoded protein; IS1 encoded protein 493811 8159474 ECBD_0477 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 encoded protein YP_003034733.1 493635 R 866768 CDS YP_003034734.1 253771903 8159475 complement(494037..494258) 1 NC_012947.1 hypothetical protein 494258 8159475 ECBD_0478 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034734.1 494037 R 866768 CDS YP_003034735.1 253771904 8159476 complement(494511..497615) 1 NC_012947.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sbo:SBO_3260 integral transmembrane protein; transporter hydrophobe/amphiphile efflux-1 (HAE1) family 497615 8159476 ECBD_0479 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter hydrophobe/amphiphile efflux-1 (HAE1) family YP_003034735.1 494511 R 866768 CDS YP_003034736.1 253771905 8159477 complement(497627..498784) 1 NC_012947.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: sbc:SbBS512_E3648 acriflavine resistance protein E; efflux transporter RND family, MFP subunit 498784 8159477 ECBD_0480 Escherichia coli 'BL21-Gold(DE3)pLysS AG' efflux transporter RND family, MFP subunit YP_003034736.1 497627 R 866768 CDS YP_003034737.1 253771906 8159478 499183..499845 1 NC_012947.1 PFAM: Tetracycline transcriptional repressor MAATS-type domain protein; regulatory protein TetR; KEGG: sbc:SbBS512_E3647 transcriptional regulator EnvR; DNA-binding transcriptional regulator EnvR 499845 8159478 ECBD_0481 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator EnvR YP_003034737.1 499183 D 866768 CDS YP_003034738.1 253771907 8159479 complement(499848..500027) 1 NC_012947.1 hypothetical protein 500027 8159479 ECBD_0482 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034738.1 499848 R 866768 CDS YP_003034739.1 253771908 8159480 complement(500111..500995) 1 NC_012947.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: ssn:SSON_3403 methyltransferase; methyltransferase 500995 8159480 ECBD_0483 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase YP_003034739.1 500111 R 866768 CDS YP_003034740.1 253771909 8158996 complement(501081..501377) 1 NC_012947.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 501377 fis 8158996 fis Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding protein Fis YP_003034740.1 501081 R 866768 CDS YP_003034741.1 253771910 8158997 complement(501403..502368) 1 NC_012947.1 TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase; KEGG: sdy:SDY_3437 tRNA-dihydrouridine synthase B; tRNA-dihydrouridine synthase B 502368 8158997 ECBD_0485 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA-dihydrouridine synthase B YP_003034741.1 501403 R 866768 CDS YP_003034742.1 253771911 8158998 complement(502697..503578) 1 NC_012947.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 503578 prmA 8158998 prmA Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosomal protein L11 methyltransferase YP_003034742.1 502697 R 866768 CDS YP_003034743.1 253771912 8158999 complement(503590..505041) 1 NC_012947.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 505041 panF 8158999 panF Escherichia coli 'BL21-Gold(DE3)pLysS AG' sodium/panthothenate symporter YP_003034743.1 503590 R 866768 CDS YP_003034744.1 253771913 8159000 complement(505031..505273) 1 NC_012947.1 PFAM: protein of unknown function DUF997; KEGG: sdy:SDY_3434 hypothetical protein; hypothetical protein 505273 8159000 ECBD_0488 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034744.1 505031 R 866768 CDS YP_003034745.1 253771914 8159001 complement(505382..506731) 1 NC_012947.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 506731 8159001 ECBD_0489 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl-CoA carboxylase biotin carboxylase subunit YP_003034745.1 505382 R 866768 CDS YP_003034746.1 253771915 8159002 complement(506742..507212) 1 NC_012947.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 507212 8159002 ECBD_0490 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_003034746.1 506742 R 866768 CDS YP_003034747.1 253771916 8159003 507354..507515 1 NC_012947.1 hypothetical protein 507515 8159003 ECBD_0491 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034747.1 507354 D 866768 CDS YP_003034748.1 253771917 8159005 complement(508190..509164) 1 NC_012947.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_3394 dehydrogenase; quinone oxidoreductase, YhdH/YhfP family 509164 8159005 ECBD_0493 Escherichia coli 'BL21-Gold(DE3)pLysS AG' quinone oxidoreductase, YhdH/YhfP family YP_003034748.1 508190 R 866768 CDS YP_003034749.1 253771918 8159006 509316..511256 1 NC_012947.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 511256 8159006 ECBD_0494 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulatory protein CsrD YP_003034749.1 509316 D 866768 CDS YP_003034750.1 253771919 8159007 complement(511265..511453) 1 NC_012947.1 KEGG: sbc:SbBS512_E3283 hypothetical protein; hypothetical protein 511453 8159007 ECBD_0495 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034750.1 511265 R 866768 CDS YP_003034751.1 253771920 8159008 511561..512604 1 NC_012947.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 512604 8159008 ECBD_0496 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rod shape-determining protein MreB YP_003034751.1 511561 D 866768 CDS YP_003034752.1 253771921 8159009 512670..513773 1 NC_012947.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 513773 8159009 ECBD_0497 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rod shape-determining protein MreC YP_003034752.1 512670 D 866768 CDS YP_003034753.1 253771922 8159010 513773..514261 1 NC_012947.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 514261 8159010 ECBD_0498 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rod shape-determining protein MreD YP_003034753.1 513773 D 866768 CDS YP_003034754.1 253771923 8159011 514270..514863 1 NC_012947.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 514863 8159011 ECBD_0499 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Maf-like protein YP_003034754.1 514270 D 866768 CDS YP_003034755.1 253771924 8159012 514853..516322 1 NC_012947.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 516322 8159012 ECBD_0500 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease G YP_003034755.1 514853 D 866768 CDS YP_003034756.1 253771925 8159013 516390..520190 1 NC_012947.1 KEGG: elf:LF82_3266 uncharacterized protein YhdP; hypothetical protein 520190 8159013 ECBD_0501 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034756.1 516390 D 866768 CDS YP_003034757.1 253771926 8159014 520620..522065 1 NC_012947.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 522065 tldD 8159014 tldD Escherichia coli 'BL21-Gold(DE3)pLysS AG' protease TldD YP_003034757.1 520620 D 866768 CDS YP_003034758.1 253771927 8159015 complement(522193..523122) 1 NC_012947.1 KEGG: sbo:SBO_3144 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 523122 8159015 ECBD_0503 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003034758.1 522193 R 866768 CDS YP_003034759.1 253771928 8159016 523305..523508 1 NC_012947.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 523508 8159016 ECBD_0504 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034759.1 523305 D 866768 CDS YP_003034760.1 253771929 8159017 523516..524448 1 NC_012947.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA 524448 8159017 ECBD_0505 Escherichia coli 'BL21-Gold(DE3)pLysS AG' p-hydroxybenzoic acid efflux subunit AaeA YP_003034760.1 523516 D 866768 CDS YP_003034761.1 253771930 8159018 524454..526421 1 NC_012947.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 526421 8159018 ECBD_0506 Escherichia coli 'BL21-Gold(DE3)pLysS AG' p-hydroxybenzoic acid efflux subunit AaeB YP_003034761.1 524454 D 866768 CDS YP_003034762.1 253771931 8159019 526513..526785 1 NC_012947.1 KEGG: sdy:SDY_3415 hypothetical protein; hypothetical protein 526785 8159019 ECBD_0507 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034762.1 526513 D 866768 CDS YP_003034763.1 253771932 8159020 complement(526841..527104) 1 NC_012947.1 KEGG: sbc:SbBS512_E3538 protein YcfR; protein YcfR 527104 8159020 ECBD_0508 Escherichia coli 'BL21-Gold(DE3)pLysS AG' protein YcfR YP_003034763.1 526841 R 866768 CDS YP_003034764.1 253771933 8159021 complement(527469..527939) 1 NC_012947.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 527939 8159021 ECBD_0509 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine repressor YP_003034764.1 527469 R 866768 CDS YP_003034765.1 253771934 8159022 complement(527923..528087) 1 NC_012947.1 KEGG: spq:SPAB_04187 hypothetical protein; hypothetical protein 528087 8159022 ECBD_0510 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034765.1 527923 R 866768 CDS YP_003034766.1 253771935 8159023 528374..529312 1 NC_012947.1 oxidizes malate to oxaloacetate; malate dehydrogenase 529312 8159023 ECBD_0511 Escherichia coli 'BL21-Gold(DE3)pLysS AG' malate dehydrogenase YP_003034766.1 528374 D 866768 CDS YP_003034767.1 253771936 8159024 complement(529374..530441) 1 NC_012947.1 KEGG: sfv:SFV_3262 serine endoprotease; TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; serine endoprotease 530441 8159024 ECBD_0512 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine endoprotease YP_003034767.1 529374 R 866768 CDS YP_003034768.1 253771937 8159025 complement(530531..531898) 1 NC_012947.1 KEGG: sbc:SbBS512_E3542 serine peptidase DegQ; TIGRFAM: protease Do; PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; serine endoprotease 531898 8159025 ECBD_0513 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine endoprotease YP_003034768.1 530531 R 866768 CDS YP_003034769.1 253771938 8159026 complement(532052..532450) 1 NC_012947.1 PFAM: protein of unknown function DUF1043; KEGG: elf:LF82_3254 cytochrome d ubiquinol oxidase subunit III; cytochrome d ubiquinol oxidase subunit III 532450 8159026 ECBD_0514 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome d ubiquinol oxidase subunit III YP_003034769.1 532052 R 866768 CDS YP_003034770.1 253771939 8159027 532644..533771 1 NC_012947.1 PFAM: AFG1-family ATPase; KEGG: sfv:SFV_3259 hypothetical protein; AFG1-family ATPase 533771 8159027 ECBD_0515 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AFG1-family ATPase YP_003034770.1 532644 D 866768 CDS YP_003034771.1 253771940 8159028 533990..534418 1 NC_012947.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 534418 rplM 8159028 rplM Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L13 YP_003034771.1 533990 D 866768 CDS YP_003034772.1 253771941 8159029 534434..534826 1 NC_012947.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 534826 rpsI 8159029 rpsI Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S9 YP_003034772.1 534434 D 866768 CDS YP_003034773.1 253771942 8159030 535221..535859 1 NC_012947.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 535859 sspA 8159030 sspA Escherichia coli 'BL21-Gold(DE3)pLysS AG' stringent starvation protein A YP_003034773.1 535221 D 866768 CDS YP_003034774.1 253771943 8159031 535865..536362 1 NC_012947.1 PFAM: stringent starvation protein B; KEGG: sfx:S3483 ClpXP protease specificity-enhancing factor; ClpXP protease specificity-enhancing factor 536362 8159031 ECBD_0519 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ClpXP protease specificity-enhancing factor YP_003034774.1 535865 D 866768 CDS YP_003034775.1 253771944 8159032 complement(536405..537772) 1 NC_012947.1 YhcL; uncharacterized member of the DcuC family of anaerobic dicarboxylate transporters; probable role in transport of carboxylates across the inner membrane from the periplasm; its encoding gene is not essential for growth and is probably cryptic; cryptic C4-dicarboxylate transporter DcuD 537772 8159032 ECBD_0520 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cryptic C4-dicarboxylate transporter DcuD YP_003034775.1 536405 R 866768 CDS YP_003034776.1 253771945 8159033 538152..538943 1 NC_012947.1 transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 538943 8159033 ECBD_0521 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator NanR YP_003034776.1 538152 D 866768 CDS YP_003034777.1 253771946 8159034 539065..539958 1 NC_012947.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 539958 8159034 ECBD_0522 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylneuraminate lyase YP_003034777.1 539065 D 866768 CDS YP_003034778.1 253771947 8159035 540067..541557 1 NC_012947.1 TIGRFAM: sialic acid transporter; PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: sbc:SbBS512_E3552 MFS transporter sialate:H+ symporter (SHS) family; sialic acid transporter 541557 8159035 ECBD_0523 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sialic acid transporter YP_003034778.1 540067 D 866768 CDS YP_003034779.1 253771948 8159036 541605..542294 1 NC_012947.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 542294 8159036 ECBD_0524 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylmannosamine-6-phosphate 2-epimerase YP_003034779.1 541605 D 866768 CDS YP_003034780.1 253771949 8159037 542291..543166 1 NC_012947.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 543166 8159037 ECBD_0525 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylmannosamine kinase YP_003034780.1 542291 D 866768 CDS YP_003034781.1 253771950 8159038 543163..543627 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sfv:SFV_3246 hypothetical protein; hypothetical protein 543627 8159038 ECBD_0526 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034781.1 543163 D 866768 CDS YP_003034782.1 253771951 8159039 complement(543703..544008) 1 NC_012947.1 KEGG: sfx:S3473 IS600 orf; IS600 orf 544008 8159039 ECBD_0527 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS600 orf YP_003034782.1 543703 R 866768 CDS YP_003034783.1 253771952 8159040 complement(544025..544504) 1 NC_012947.1 PFAM: protein of unknown function DUF1016; KEGG: elf:LF82_3256 uncharacterized protein YhcG; hypothetical protein 544504 8159040 ECBD_0528 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034783.1 544025 R 866768 CDS YP_003034784.1 253771953 8159041 complement(544688..546106) 1 NC_012947.1 glutamate synthase is composed of subunits alpha and beta; subunit beta is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the subunit alpha, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 546106 gltD 8159041 gltD Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate synthase subunit beta YP_003034784.1 544688 R 866768 CDS YP_003034785.1 253771954 8159042 complement(546119..550672) 1 NC_012947.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 550672 gltB 8159042 gltB Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate synthase subunit alpha YP_003034785.1 546119 R 866768 CDS YP_003034786.1 253771955 8159043 551254..552183 1 NC_012947.1 KEGG: sbo:SBO_3171 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 552183 8159043 ECBD_0531 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034786.1 551254 D 866768 CDS YP_003034787.1 253771956 8159044 552279..554615 1 NC_012947.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 554615 8159044 ECBD_0532 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aerobic respiration control sensor protein ArcB YP_003034787.1 552279 D 866768 CDS YP_003034788.1 253771957 8159045 554845..555498 1 NC_012947.1 PFAM: ThiJ/PfpI domain protein; KEGG: sfv:SFV_3239 isoprenoid biosynthesis protein with amidotransferase-like domain; isoprenoid biosynthesis protein with amidotransferase-like domain 555498 8159045 ECBD_0533 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isoprenoid biosynthesis protein with amidotransferase-like domain YP_003034788.1 554845 D 866768 CDS YP_003034789.1 253771958 8159046 555495..556223 1 NC_012947.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 556223 mtgA 8159046 mtgA Escherichia coli 'BL21-Gold(DE3)pLysS AG' monofunctional biosynthetic peptidoglycan transglycosylase YP_003034789.1 555495 D 866768 CDS YP_003034790.1 253771959 8159047 complement(556220..556852) 1 NC_012947.1 KEGG: sfx:S3465 hypothetical protein; hypothetical protein 556852 8159047 ECBD_0535 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034790.1 556220 R 866768 CDS YP_003034791.1 253771960 8159048 complement(557066..557338) 1 NC_012947.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: sfv:SFV_3236 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 557338 8159048 ECBD_0536 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YP_003034791.1 557066 R 866768 CDS YP_003034792.1 253771961 8159049 complement(557335..558189) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E3565 hypothetical protein; hypothetical protein 558189 8159049 ECBD_0537 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034792.1 557335 R 866768 CDS YP_003034793.1 253771962 8159050 complement(558235..558726) 1 NC_012947.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sfv:SFV_3234 PTS IIA-like nitrogen-regulatory protein PtsN; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 558726 8159050 ECBD_0538 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_003034793.1 558235 R 866768 CDS YP_003034794.1 253771963 8159051 complement(558844..559131) 1 NC_012947.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 559131 8159051 ECBD_0539 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sigma(54) modulation protein YP_003034794.1 558844 R 866768 CDS YP_003034795.1 253771964 8159052 complement(559154..560587) 1 NC_012947.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 560587 8159052 ECBD_0540 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA polymerase factor sigma-54 YP_003034795.1 559154 R 866768 CDS YP_003034796.1 253771965 8159053 complement(560635..561360) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sdy:SDY_3382 ABC transporter ATP-binding protein YhbG; ABC transporter ATP-binding protein 561360 8159053 ECBD_0541 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATP-binding protein YP_003034796.1 560635 R 866768 CDS YP_003034797.1 253771966 8159054 complement(561367..561924) 1 NC_012947.1 LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA 561924 8159054 ECBD_0542 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipopolysaccharide transport periplasmic protein LptA YP_003034797.1 561367 R 866768 CDS YP_003034798.1 253771967 8159055 complement(561893..562468) 1 NC_012947.1 PFAM: protein of unknown function DUF1239; KEGG: sfv:SFV_3229 hypothetical protein; hypothetical protein 562468 8159055 ECBD_0543 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034798.1 561893 R 866768 CDS YP_003034799.1 253771968 8159056 complement(562465..563031) 1 NC_012947.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 563031 8159056 ECBD_0544 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_003034799.1 562465 R 866768 CDS YP_003034800.1 253771969 8159057 complement(563052..564038) 1 NC_012947.1 KEGG: sbc:SbBS512_E3573 arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; D-arabinose 5-phosphate isomerase 564038 8159057 ECBD_0545 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-arabinose 5-phosphate isomerase YP_003034800.1 563052 R 866768 CDS YP_003034801.1 253771970 8159058 complement(564052..565029) 1 NC_012947.1 YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 565029 8159058 ECBD_0546 Escherichia coli 'BL21-Gold(DE3)pLysS AG' calcium/sodium:proton antiporter YP_003034801.1 564052 R 866768 CDS YP_003034802.1 253771971 8159059 565239..566048 1 NC_012947.1 ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein 566048 8159059 ECBD_0547 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATP-binding protein YP_003034802.1 565239 D 866768 CDS YP_003034803.1 253771972 8159060 566056..566838 1 NC_012947.1 PFAM: protein of unknown function DUF140; KEGG: sbc:SbBS512_E3576 toluene ABC transporter permease; hypothetical protein 566838 8159060 ECBD_0548 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034803.1 566056 D 866768 CDS YP_003034804.1 253771973 8159061 566843..567394 1 NC_012947.1 PFAM: hypothetical protein; KEGG: sbc:SbBS512_E3577 Mce family protein; hypothetical protein 567394 8159061 ECBD_0549 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034804.1 566843 D 866768 CDS YP_003034805.1 253771974 8159062 567413..568048 1 NC_012947.1 PFAM: toluene tolerance family protein; KEGG: sfv:SFV_3222 hypothetical protein; toluene tolerance family protein 568048 8159062 ECBD_0550 Escherichia coli 'BL21-Gold(DE3)pLysS AG' toluene tolerance family protein YP_003034805.1 567413 D 866768 CDS YP_003034806.1 253771975 8159063 568048..568341 1 NC_012947.1 KEGG: sfv:SFV_3221 hypothetical protein; hypothetical protein 568341 8159063 ECBD_0551 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034806.1 568048 D 866768 CDS YP_003034807.1 253771976 8159064 568486..568755 1 NC_012947.1 PFAM: BolA family protein; KEGG: sfv:SFV_3220 hypothetical protein; BolA family protein 568755 8159064 ECBD_0552 Escherichia coli 'BL21-Gold(DE3)pLysS AG' BolA family protein YP_003034807.1 568486 D 866768 CDS YP_003034808.1 253771977 8159065 568810..570069 1 NC_012947.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 570069 8159065 ECBD_0553 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_003034808.1 568810 D 866768 CDS YP_003034809.1 253771978 8159066 complement(570117..570395) 1 NC_012947.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 570395 8159066 ECBD_0554 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator Nlp YP_003034809.1 570117 R 866768 CDS YP_003034810.1 253771979 8159067 complement(570624..571595) 1 NC_012947.1 PFAM: polyprenyl synthetase; KEGG: sbo:SBO_3195 octaprenyl diphosphate synthase; octaprenyl diphosphate synthase 571595 8159067 ECBD_0555 Escherichia coli 'BL21-Gold(DE3)pLysS AG' octaprenyl diphosphate synthase YP_003034810.1 570624 R 866768 CDS YP_003034811.1 253771980 8159068 571854..572165 1 NC_012947.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: sdy:SDY_3367 50S ribosomal protein L21; 50S ribosomal protein L21 572165 rplU 8159068 rplU Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L21 YP_003034811.1 571854 D 866768 CDS YP_003034812.1 253771981 8159069 572186..572443 1 NC_012947.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 572443 rpmA 8159069 rpmA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L27 YP_003034812.1 572186 D 866768 CDS YP_003034813.1 253771982 8159070 572570..573535 1 NC_012947.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbo:SBO_3198 hypothetical protein; hypothetical protein 573535 8159070 ECBD_0558 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034813.1 572570 D 866768 CDS YP_003034814.1 253771983 8159071 573551..574723 1 NC_012947.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 574723 obgE 8159071 obgE Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTPase ObgE YP_003034814.1 573551 D 866768 CDS YP_003034815.1 253771984 8159072 complement(574909..576342) 1 NC_012947.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase 576342 8159072 ECBD_0560 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanyl-D-alanine carboxypeptidase/endopeptidase YP_003034815.1 574909 R 866768 CDS YP_003034816.1 253771985 8159073 576590..577066 1 NC_012947.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 577066 greA 8159073 greA Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcription elongation factor GreA YP_003034816.1 576590 D 866768 CDS YP_003034817.1 253771986 8159074 complement(577222..577515) 1 NC_012947.1 RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 577515 8159074 ECBD_0562 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA-binding protein YhbY YP_003034817.1 577222 R 866768 CDS YP_003034818.1 253771987 8159075 577641..578270 1 NC_012947.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 578270 rrmJ 8159075 rrmJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA methyltransferase J YP_003034818.1 577641 D 866768 CDS YP_003034819.1 253771988 8159076 578361..580304 1 NC_012947.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 580304 hflB 8159076 hflB Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent metalloprotease YP_003034819.1 578361 D 866768 CDS YP_003034820.1 253771989 8159725 580394..581242 1 NC_012947.1 catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase 581242 folP 8159725 folP Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydropteroate synthase YP_003034820.1 580394 D 866768 CDS YP_003034821.1 253771990 8158745 581235..582572 1 NC_012947.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 582572 glmM 8158745 glmM Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglucosamine mutase YP_003034821.1 581235 D 866768 CDS YP_003034822.1 253771991 8158746 582800..583132 1 NC_012947.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: efe:EFER_3152 preprotein translocase membrane subunit; preprotein translocase subunit SecG 583132 secG 8158746 secG Escherichia coli 'BL21-Gold(DE3)pLysS AG' preprotein translocase subunit SecG YP_003034822.1 582800 D 866768 CDS YP_003034823.1 253771992 8158748 583692..585317 1 NC_012947.1 PFAM: sulfatase; KEGG: elf:LF82_3252 UPF0141 inner membrane protein YhbX; sulfatase 585317 8158748 ECBD_0568 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfatase YP_003034823.1 583692 D 866768 CDS YP_003034824.1 253771993 8158749 complement(585325..586668) 1 NC_012947.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 586668 8158749 ECBD_0569 Escherichia coli 'BL21-Gold(DE3)pLysS AG' argininosuccinate synthase YP_003034824.1 585325 R 866768 CDS YP_003034825.1 253771994 8158751 587329..587751 1 NC_012947.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 587751 8158751 ECBD_0570 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034825.1 587329 D 866768 CDS YP_003034826.1 253771995 8158752 587779..589266 1 NC_012947.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 589266 nusA 8158752 nusA Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcription elongation factor NusA YP_003034826.1 587779 D 866768 CDS YP_003034827.1 253771996 8158753 589291..591963 1 NC_012947.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 591963 infB 8158753 infB Escherichia coli 'BL21-Gold(DE3)pLysS AG' translation initiation factor IF-2 YP_003034827.1 589291 D 866768 CDS YP_003034828.1 253771997 8158754 592127..592528 1 NC_012947.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 592528 rbfA 8158754 rbfA Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosome-binding factor A YP_003034828.1 592127 D 866768 CDS YP_003034829.1 253771998 8158755 592528..593472 1 NC_012947.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 593472 truB 8158755 truB Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA pseudouridine synthase B YP_003034829.1 592528 D 866768 CDS YP_003034830.1 253771999 8158756 593621..593890 1 NC_012947.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 593890 rpsO 8158756 rpsO Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S15 YP_003034830.1 593621 D 866768 CDS YP_003034831.1 253772000 8158757 594137..596272 1 NC_012947.1 KEGG: ssn:SSON_3310 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; polynucleotide phosphorylase/polyadenylase 596272 8158757 ECBD_0576 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polynucleotide phosphorylase/polyadenylase YP_003034831.1 594137 D 866768 CDS YP_003034832.1 253772001 8158758 596381..597265 1 NC_012947.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 597265 8158758 ECBD_0577 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein NlpI YP_003034832.1 596381 D 866768 CDS YP_003034833.1 253772002 8158759 597445..599334 1 NC_012947.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 599334 8158759 ECBD_0578 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent RNA helicase DeaD YP_003034833.1 597445 D 866768 CDS YP_003034834.1 253772003 8158760 599488..600732 1 NC_012947.1 tryptophan transporter of high affinity; tryptophan permease 600732 8158760 ECBD_0579 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tryptophan permease YP_003034834.1 599488 D 866768 CDS YP_003034835.1 253772004 8158761 complement(600850..601857) 1 NC_012947.1 PFAM: Luciferase-like monooxygenase; KEGG: sbo:SBO_3222 hypothetical protein; hypothetical protein 601857 8158761 ECBD_0580 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034835.1 600850 R 866768 CDS YP_003034836.1 253772005 8158762 complement(601938..602816) 1 NC_012947.1 PFAM: peptidase U32; KEGG: sdy:SDY_3338 hypothetical protein; peptidase U32 602816 8158762 ECBD_0581 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase U32 YP_003034836.1 601938 R 866768 CDS YP_003034837.1 253772006 8158763 complement(602825..603820) 1 NC_012947.1 PFAM: peptidase U32; KEGG: sfv:SFV_3188 collagenase; peptidase U32 603820 8158763 ECBD_0582 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase U32 YP_003034837.1 602825 R 866768 CDS YP_003034838.1 253772007 8158764 604029..604553 1 NC_012947.1 PFAM: sterol-binding domain protein; KEGG: efe:EFER_3120 lipid carrier protein; sterol-binding domain protein 604553 8158764 ECBD_0583 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sterol-binding domain protein YP_003034838.1 604029 D 866768 CDS YP_003034839.1 253772008 8158765 604547..605050 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_3335 hypothetical protein; GCN5-related N-acetyltransferase 605050 8158765 ECBD_0584 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GCN5-related N-acetyltransferase YP_003034839.1 604547 D 866768 CDS YP_003034840.1 253772009 8158766 complement(605037..605348) 1 NC_012947.1 PFAM: excinuclease ABC C subunit domain protein; SMART: excinuclease ABC C subunit domain protein; KEGG: sfv:SFV_3185 GIY-YIG nuclease superfamily protein; GIY-YIG nuclease superfamily protein 605348 8158766 ECBD_0585 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GIY-YIG nuclease superfamily protein YP_003034840.1 605037 R 866768 CDS YP_003034841.1 253772010 8158767 605390..605833 1 NC_012947.1 KEGG: sfv:SFV_3184 hypothetical protein; hypothetical protein 605833 8158767 ECBD_0586 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034841.1 605390 D 866768 CDS YP_003034842.1 253772011 8158768 complement(605813..606331) 1 NC_012947.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: sdy:SDY_3332 hypothetical protein; intracellular protease PfpI family 606331 8158768 ECBD_0587 Escherichia coli 'BL21-Gold(DE3)pLysS AG' intracellular protease PfpI family YP_003034842.1 605813 R 866768 CDS YP_003034843.1 253772012 8158769 606459..607094 1 NC_012947.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: elf:LF82_3683 uncharacterized protein YraR; NAD-dependent epimerase/dehydratase 607094 8158769 ECBD_0588 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD-dependent epimerase/dehydratase YP_003034843.1 606459 D 866768 CDS YP_003034844.1 253772013 8158770 607167..608207 1 NC_012947.1 PFAM: permease; KEGG: ssn:SSON_3297 hypothetical protein; permease 608207 8158770 ECBD_0589 Escherichia coli 'BL21-Gold(DE3)pLysS AG' permease YP_003034844.1 607167 D 866768 CDS YP_003034845.1 253772014 8158771 complement(608321..608896) 1 NC_012947.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: elf:LF82_3681 uncharacterized protein YraP; hypothetical protein 608896 8158771 ECBD_0590 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034845.1 608321 R 866768 CDS YP_003034846.1 253772015 8158772 complement(608906..609496) 1 NC_012947.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 609496 8158772 ECBD_0591 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DnaA initiator-associating protein DiaA YP_003034846.1 608906 R 866768 CDS YP_003034847.1 253772016 8158773 complement(609516..609911) 1 NC_012947.1 PFAM: protein of unknown function UPF0102; KEGG: ssn:SSON_3294 hypothetical protein; hypothetical protein 609911 8158773 ECBD_0592 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034847.1 609516 R 866768 CDS YP_003034848.1 253772017 8158774 complement(609869..611905) 1 NC_012947.1 PFAM: LppC family lipoprotein; KEGG: ssn:SSON_3293 glycosylase; LppC family lipoprotein 611905 8158774 ECBD_0593 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LppC family lipoprotein YP_003034848.1 609869 R 866768 CDS YP_003034849.1 253772018 8158775 611970..612830 1 NC_012947.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sdy:SDY_3325 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase 612830 8158775 ECBD_0594 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uroporphyrin-III C/tetrapyrrole methyltransferase YP_003034849.1 611970 D 866768 CDS YP_003034850.1 253772019 8158776 complement(612873..613964) 1 NC_012947.1 KEGG: sfv:SFV_3175 fimbrial protein; fimbrial protein 613964 8158776 ECBD_0595 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003034850.1 612873 R 866768 CDS YP_003034851.1 253772020 8158777 complement(613975..616491) 1 NC_012947.1 PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 616491 8158777 ECBD_0596 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial biogenesis outer membrane usher protein YP_003034851.1 613975 R 866768 CDS YP_003034852.1 253772021 8158778 complement(616521..617216) 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sfv:SFV_3171 chaperone; Pili assembly chaperone, N-terminal 617216 8158778 ECBD_0597 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Pili assembly chaperone, N-terminal YP_003034852.1 616521 R 866768 CDS YP_003034853.1 253772022 8158779 complement(617296..617880) 1 NC_012947.1 PFAM: fimbrial protein; fimbrial protein 617880 8158779 ECBD_0598 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003034853.1 617296 R 866768 CDS YP_003034854.1 253772023 8158780 complement(618281..618982) 1 NC_012947.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sfx:S3393 galactosamine-6-phosphate isomerase; galactosamine-6-phosphate isomerase 618982 8158780 ECBD_0599 Escherichia coli 'BL21-Gold(DE3)pLysS AG' galactosamine-6-phosphate isomerase YP_003034854.1 618281 R 866768 CDS YP_003034855.1 253772024 8158781 complement(619037..619828) 1 NC_012947.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IID 619828 8158781 ECBD_0600 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N-acetylgalactosamine-specific transporter subunit IID YP_003034855.1 619037 R 866768 CDS YP_003034856.1 253772025 8158782 complement(619818..620621) 1 NC_012947.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane;protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IIC 620621 8158782 ECBD_0601 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N-acetylgalactosamine-specific transporter subunit IIC YP_003034856.1 619818 R 866768 CDS YP_003034857.1 253772026 8158783 complement(620660..621136) 1 NC_012947.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IIB 621136 8158783 ECBD_0602 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N-acetylgalactosamine-specific transporter subunit IIB YP_003034857.1 620660 R 866768 CDS YP_003034858.1 253772027 8158784 complement(621303..622163) 1 NC_012947.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 622163 kbaY 8158784 kbaY Escherichia coli 'BL21-Gold(DE3)pLysS AG' tagatose-bisphosphate aldolase YP_003034858.1 621303 R 866768 CDS YP_003034859.1 253772028 8158785 complement(622176..623330) 1 NC_012947.1 TIGRFAM: sugar isomerase, AgaS family; PFAM: sugar isomerase (SIS); sugar isomerase, AgaS family 623330 8158785 ECBD_0604 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar isomerase, AgaS family YP_003034859.1 622176 R 866768 CDS YP_003034860.1 253772029 8158786 complement(623681..624814) 1 NC_012947.1 KEGG: elf:LF82_p515 N-acetylgalactosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 624814 8158786 ECBD_0605 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylglucosamine-6-phosphate deacetylase YP_003034860.1 623681 R 866768 CDS YP_003034861.1 253772030 8158787 complement(624811..625245) 1 NC_012947.1 PFAM: PTS system fructose subfamily IIA component; KEGG: elf:LF82_p514 phosphotransferase system enzyme subunit IIA component); PTS system fructose subfamily IIA component 625245 8158787 ECBD_0606 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system fructose subfamily IIA component YP_003034861.1 624811 R 866768 CDS YP_003034862.1 253772031 8158788 complement(625263..626141) 1 NC_012947.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: efe:EFER_4358 hexose/hexosamine family PTS permease IID component; PTS system mannose/fructose/sorbose family IID component 626141 8158788 ECBD_0607 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system mannose/fructose/sorbose family IID component YP_003034862.1 625263 R 866768 CDS YP_003034863.1 253772032 8158789 complement(626131..626910) 1 NC_012947.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; phosphotransferase system PTS sorbose-specific IIC subunit 626910 8158789 ECBD_0608 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphotransferase system PTS sorbose-specific IIC subunit YP_003034863.1 626131 R 866768 CDS YP_003034864.1 253772033 8158790 complement(626921..627394) 1 NC_012947.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake;involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IIB 627394 8158790 ECBD_0609 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N-acetylgalactosamine-specific transporter subunit IIB YP_003034864.1 626921 R 866768 CDS YP_003034865.1 253772034 8158791 complement(627417..628697) 1 NC_012947.1 TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: sfx:S3382 tagatose 6-phosphate kinase 2; D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 628697 8158791 ECBD_0610 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit YP_003034865.1 627417 R 866768 CDS YP_003034866.1 253772035 8158792 628946..629755 1 NC_012947.1 transcriptional repressor for the agaZVWA and agaSYBCDI operons; DNA-binding transcriptional regulator AgaR 629755 8158792 ECBD_0611 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator AgaR YP_003034866.1 628946 D 866768 CDS YP_003034867.1 253772036 8158794 complement(630274..630609) 1 NC_012947.1 SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation; regulator PrlF 630609 8158794 ECBD_0613 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulator PrlF YP_003034867.1 630274 R 866768 CDS YP_003034868.1 253772037 8158795 complement(630757..632328) 1 NC_012947.1 TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 632328 8158795 ECBD_0614 Escherichia coli 'BL21-Gold(DE3)pLysS AG' galactarate dehydratase YP_003034868.1 630757 R 866768 CDS YP_003034869.1 253772038 8158796 632703..634037 1 NC_012947.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 634037 8158796 ECBD_0615 Escherichia coli 'BL21-Gold(DE3)pLysS AG' d-galactonate transporter YP_003034869.1 632703 D 866768 CDS YP_003034870.1 253772039 8158797 634053..634823 1 NC_012947.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 634823 8158797 ECBD_0616 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_003034870.1 634053 D 866768 CDS YP_003034871.1 253772040 8158798 634853..635743 1 NC_012947.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 635743 garR 8158798 garR Escherichia coli 'BL21-Gold(DE3)pLysS AG' tartronate semialdehyde reductase YP_003034871.1 634853 D 866768 CDS YP_003034872.1 253772041 8158799 635840..636985 1 NC_012947.1 KEGG: sbo:SBO_2989 glycerate kinase I; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; glycerate kinase I 636985 8158799 ECBD_0618 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerate kinase I YP_003034872.1 635840 D 866768 CDS YP_003034873.1 253772042 8158801 complement(637987..639090) 1 NC_012947.1 KEGG: sfv:SFV_3162 hypothetical protein; hypothetical protein 639090 8158801 ECBD_0619 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034873.1 637987 R 866768 CDS YP_003034874.1 253772043 8158802 complement(639112..639651) 1 NC_012947.1 hypothetical protein 639651 8158802 ECBD_0620 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034874.1 639112 R 866768 CDS YP_003034875.1 253772044 8158803 complement(639907..640263) 1 NC_012947.1 participates in controlling the expression of several structural genes for the enzyme threonine dehydratase; TdcR activates the tdcABCDEFG operon; DNA-binding transcriptional activator TdcR 640263 8158803 ECBD_0621 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator TdcR YP_003034875.1 639907 R 866768 CDS YP_003034876.1 253772045 8158804 640440..641378 1 NC_012947.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 641378 8158804 ECBD_0622 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator TdcA YP_003034876.1 640440 D 866768 CDS YP_003034877.1 253772046 8158805 641477..642466 1 NC_012947.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 642466 8158805 ECBD_0623 Escherichia coli 'BL21-Gold(DE3)pLysS AG' threonine dehydratase YP_003034877.1 641477 D 866768 CDS YP_003034878.1 253772047 8158806 642488..643819 1 NC_012947.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 643819 8158806 ECBD_0624 Escherichia coli 'BL21-Gold(DE3)pLysS AG' threonine/serine transporter TdcC YP_003034878.1 642488 D 866768 CDS YP_003034879.1 253772048 8158807 643845..645053 1 NC_012947.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 645053 8158807 ECBD_0625 Escherichia coli 'BL21-Gold(DE3)pLysS AG' propionate/acetate kinase YP_003034879.1 643845 D 866768 CDS YP_003034880.1 253772049 8158808 645087..647381 1 NC_012947.1 KEGG: sbc:SbBS512_E3243 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; formate acetyltransferase 647381 8158808 ECBD_0626 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate acetyltransferase YP_003034880.1 645087 D 866768 CDS YP_003034881.1 253772050 8158809 647395..647784 1 NC_012947.1 TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: sbc:SbBS512_E3244 endoribonuclease L-PSP; hypothetical protein 647784 8158809 ECBD_0627 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034881.1 647395 D 866768 CDS YP_003034882.1 253772051 8158810 647856..649220 1 NC_012947.1 KEGG: sbc:SbBS512_E3245 L-serine ammonia-lyase TdcG; TIGRFAM: L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 649220 8158810 ECBD_0628 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-serine dehydratase YP_003034882.1 647856 D 866768 CDS YP_003034883.1 253772052 8158811 649496..650827 1 NC_012947.1 TIGRFAM: serine transporter; KEGG: ssn:SSON_3268 transporter permease; serine transporter 650827 8158811 ECBD_0629 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine transporter YP_003034883.1 649496 D 866768 CDS YP_003034884.1 253772053 8158812 650855..652165 1 NC_012947.1 PFAM: protein of unknown function DUF1063; hypothetical protein 652165 8158812 ECBD_0630 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034884.1 650855 D 866768 CDS YP_003034885.1 253772054 8158813 complement(652299..652463) 1 NC_012947.1 KEGG: sdy:SDY_3299 hypothetical protein; hypothetical protein 652463 8158813 ECBD_0631 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034885.1 652299 R 866768 CDS YP_003034886.1 253772055 8158814 complement(652486..653187) 1 NC_012947.1 PFAM: pirin; KEGG: sbc:SbBS512_E3251 pirin family protein; pirin 653187 8158814 ECBD_0632 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pirin YP_003034886.1 652486 R 866768 CDS YP_003034887.1 253772056 8158815 653292..654188 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_2972 transcriptional regulator LysR-type; LysR family transcriptional regulator 654188 8158815 ECBD_0633 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003034887.1 653292 D 866768 CDS YP_003034888.1 253772057 8158816 complement(654239..654595) 1 NC_012947.1 PFAM: protein of unknown function DUF805; KEGG: ssn:SSON_3263 cytochrome; hypothetical protein 654595 8158816 ECBD_0634 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034888.1 654239 R 866768 CDS YP_003034889.1 253772058 8158817 complement(654837..655202) 1 NC_012947.1 PFAM: protein of unknown function DUF805; KEGG: sbc:SbBS512_E3258 inner membrane protein YhaH; hypothetical protein 655202 8158817 ECBD_0635 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034889.1 654837 R 866768 CDS YP_003034890.1 253772059 8158818 complement(655286..655435) 1 NC_012947.1 hypothetical protein 655435 8158818 ECBD_0636 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034890.1 655286 R 866768 CDS YP_003034891.1 253772060 8158819 complement(655495..656481) 1 NC_012947.1 KEGG: sdy:SDY_3291 transferase; glutathione transferase 656481 8158819 ECBD_0637 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione transferase YP_003034891.1 655495 R 866768 CDS YP_003034892.1 253772061 8158820 complement(656551..656943) 1 NC_012947.1 PFAM: DoxX family protein; DoxX family protein 656943 8158820 ECBD_0638 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DoxX family protein YP_003034892.1 656551 R 866768 CDS YP_003034893.1 253772062 8158821 complement(657129..657428) 1 NC_012947.1 KEGG: sfv:SFV_3144 hypothetical protein; hypothetical protein 657428 8158821 ECBD_0639 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034893.1 657129 R 866768 CDS YP_003034894.1 253772063 8158822 complement(657418..657822) 1 NC_012947.1 KEGG: sbc:SbBS512_E3262 hypothetical protein; hypothetical protein 657822 8158822 ECBD_0640 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034894.1 657418 R 866768 CDS YP_003034895.1 253772064 8158823 complement(657825..658130) 1 NC_012947.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_3285 hypothetical protein; hypothetical protein 658130 8158823 ECBD_0641 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034895.1 657825 R 866768 CDS YP_003034896.1 253772065 8158824 complement(658168..658536) 1 NC_012947.1 PFAM: protein of unknown function DUF1090; KEGG: elf:LF82_3670 protein YqjC; hypothetical protein 658536 8158824 ECBD_0642 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034896.1 658168 R 866768 CDS YP_003034897.1 253772066 8158825 complement(658683..659066) 1 NC_012947.1 KEGG: sbc:SbBS512_E3265 hypothetical protein; hypothetical protein 659066 8158825 ECBD_0643 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034897.1 658683 R 866768 CDS YP_003034898.1 253772067 8158662 complement(659070..659732) 1 NC_012947.1 PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_3282 hypothetical protein; hypothetical protein 659732 8158662 ECBD_0644 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034898.1 659070 R 866768 CDS YP_003034899.1 253772068 8158663 complement(659921..660052) 1 NC_012947.1 hypothetical protein 660052 8158663 ECBD_0645 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034899.1 659921 R 866768 CDS YP_003034900.1 253772069 8158664 complement(660077..660853) 1 NC_012947.1 regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization.; DNA-binding transcriptional repressor ExuR 660853 8158664 ECBD_0646 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor ExuR YP_003034900.1 660077 R 866768 CDS YP_003034901.1 253772070 8158665 complement(660983..662281) 1 NC_012947.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_3134 transporter of hexuronates; d-galactonate transporter 662281 8158665 ECBD_0647 Escherichia coli 'BL21-Gold(DE3)pLysS AG' d-galactonate transporter YP_003034901.1 660983 R 866768 CDS YP_003034902.1 253772071 8158666 662764..664176 1 NC_012947.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 664176 8158666 ECBD_0648 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucuronate isomerase YP_003034902.1 662764 D 866768 CDS YP_003034903.1 253772072 8158667 664191..665678 1 NC_012947.1 PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein; KEGG: sdy:SDY_3276 altronate hydrolase; altronate dehydratase 665678 8158667 ECBD_0649 Escherichia coli 'BL21-Gold(DE3)pLysS AG' altronate dehydratase YP_003034903.1 664191 D 866768 CDS YP_003034904.1 253772073 8158668 665761..666312 1 NC_012947.1 KEGG: sfv:SFV_3131 hypothetical protein; hypothetical protein 666312 8158668 ECBD_0650 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034904.1 665761 D 866768 CDS YP_003034905.1 253772074 8158669 complement(666317..667561) 1 NC_012947.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 667561 8158669 ECBD_0651 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine/threonine transporter SstT YP_003034905.1 666317 R 866768 CDS YP_003034906.1 253772075 8158670 complement(667766..668068) 1 NC_012947.1 KEGG: efe:EFER_1021 hypothetical protein; hypothetical protein 668068 8158670 ECBD_0652 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034906.1 667766 R 866768 CDS YP_003034907.1 253772076 8158671 complement(668177..669142) 1 NC_012947.1 PFAM: integral membrane protein TerC; KEGG: ssn:SSON_3117 transporter; integral membrane protein TerC 669142 8158671 ECBD_0653 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integral membrane protein TerC YP_003034907.1 668177 R 866768 CDS YP_003034908.1 253772077 8158672 complement(669235..669372) 1 NC_012947.1 KEGG: spq:SPAB_04023 hypothetical protein; hypothetical protein 669372 8158672 ECBD_0654 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034908.1 669235 R 866768 CDS YP_003034909.1 253772078 8158673 complement(669425..670411) 1 NC_012947.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: sfv:SFV_3128 hypothetical protein; oxidoreductase domain protein 670411 8158673 ECBD_0655 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase domain protein YP_003034909.1 669425 R 866768 CDS YP_003034910.1 253772079 8158674 complement(670490..671182) 1 NC_012947.1 PFAM: protein of unknown function DUF218; KEGG: sfv:SFV_3127 hypothetical protein; hypothetical protein 671182 8158674 ECBD_0656 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034910.1 670490 R 866768 CDS YP_003034911.1 253772080 8158675 complement(671259..671762) 1 NC_012947.1 PFAM: protein of unknown function DUF45; KEGG: sdy:SDY_3268 hypothetical protein; hypothetical protein 671762 8158675 ECBD_0657 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034911.1 671259 R 866768 CDS YP_003034912.1 253772081 8158676 671847..672983 1 NC_012947.1 PFAM: methyltransferase small; methyltransferase type 12; KEGG: sdy:SDY_3267 enzyme; rRNA (guanine-N(2)-)-methyltransferase 672983 8158676 ECBD_0658 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rRNA (guanine-N(2)-)-methyltransferase YP_003034912.1 671847 D 866768 CDS YP_003034913.1 253772082 8158677 673267..673581 1 NC_012947.1 KEGG: sfv:SFV_3124 hypothetical protein; hypothetical protein 673581 8158677 ECBD_0659 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034913.1 673267 D 866768 CDS YP_003034914.1 253772083 8158678 673578..673994 1 NC_012947.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sfv:SFV_3123 hypothetical protein; XRE family transcriptional regulator 673994 8158678 ECBD_0660 Escherichia coli 'BL21-Gold(DE3)pLysS AG' XRE family transcriptional regulator YP_003034914.1 673578 D 866768 CDS YP_003034915.1 253772084 8158679 complement(674039..676057) 1 NC_012947.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: ssn:SSON_3124 NADPH dehydrogenase; NADH:flavin oxidoreductase/NADH oxidase 676057 8158679 ECBD_0661 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH:flavin oxidoreductase/NADH oxidase YP_003034915.1 674039 R 866768 CDS YP_003034916.1 253772085 8158680 complement(676483..678834) 1 NC_012947.1 KEGG: sfl:SF3120 glycosyl hydrolase; glycosyl hydrolase 678834 8158680 ECBD_0662 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl hydrolase YP_003034916.1 676483 R 866768 CDS YP_003034917.1 253772086 8158681 complement(678851..679921) 1 NC_012947.1 KEGG: sbc:SbBS512_E3514 hypothetical protein; hypothetical protein 679921 8158681 ECBD_0663 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034917.1 678851 R 866768 CDS YP_003034918.1 253772087 8158682 complement(680055..681488) 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: sbo:SBO_2937 oxidoreductase; amino acid permease-associated region 681488 8158682 ECBD_0664 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid permease-associated region YP_003034918.1 680055 R 866768 CDS YP_003034919.1 253772088 8158683 complement(681551..682000) 1 NC_012947.1 in Escherichia coli this is the second beta-galactosidase system; cryptic beta-D-galactosidase subunit beta 682000 ebgC 8158683 ebgC Escherichia coli 'BL21-Gold(DE3)pLysS AG' cryptic beta-D-galactosidase subunit beta YP_003034919.1 681551 R 866768 CDS YP_003034920.1 253772089 8158684 complement(681997..685089) 1 NC_012947.1 in Escherichia coli this is the second beta-galactosidase system; cryptic beta-D-galactosidase subunit alpha 685089 ebgA 8158684 ebgA Escherichia coli 'BL21-Gold(DE3)pLysS AG' cryptic beta-D-galactosidase subunit alpha YP_003034920.1 681997 R 866768 CDS YP_003034921.1 253772090 8158685 complement(685273..686256) 1 NC_012947.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; DNA-binding transcriptional repressor EbgR 686256 8158685 ECBD_0667 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor EbgR YP_003034921.1 685273 R 866768 CDS YP_003034922.1 253772091 8158686 686475..686807 1 NC_012947.1 PFAM: t-RNA-binding domain protein; KEGG: sbo:SBO_2933 hypothetical protein; hypothetical protein 686807 8158686 ECBD_0668 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034922.1 686475 D 866768 CDS YP_003034923.1 253772092 8158687 complement(686849..688138) 1 NC_012947.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 688138 8158687 ECBD_0669 Escherichia coli 'BL21-Gold(DE3)pLysS AG' putrescine--2-oxoglutarate aminotransferase YP_003034923.1 686849 R 866768 CDS YP_003034924.1 253772093 8158688 688646..690166 1 NC_012947.1 KEGG: ssn:SSON_3210 aerotaxis sensor receptor, flavoprotein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 690166 8158688 ECBD_0670 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_003034924.1 688646 D 866768 CDS YP_003034925.1 253772094 8158689 complement(690320..690943) 1 NC_012947.1 PFAM: transcriptional regulator PadR family protein; KEGG: sfv:SFV_3112 hypothetical protein; PadR family transcriptional regulator 690943 8158689 ECBD_0671 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PadR family transcriptional regulator YP_003034925.1 690320 R 866768 CDS YP_003034926.1 253772095 8158690 691231..691995 1 NC_012947.1 PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: sbc:SbBS512_E3506 siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein 691995 8158690 ECBD_0672 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FAD-binding 9 siderophore-interacting domain protein YP_003034926.1 691231 D 866768 CDS YP_003034927.1 253772096 8158692 692249..692755 1 NC_012947.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: sfv:SFV_3109 G/U mismatch-specific DNA glycosylase; G/U mismatch-specific DNA glycosylase 692755 8158692 ECBD_0673 Escherichia coli 'BL21-Gold(DE3)pLysS AG' G/U mismatch-specific DNA glycosylase YP_003034927.1 692249 D 866768 CDS YP_003034928.1 253772097 8158693 complement(692834..694675) 1 NC_012947.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 694675 8158693 ECBD_0674 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA polymerase sigma factor RpoD YP_003034928.1 692834 R 866768 CDS YP_003034929.1 253772098 8158694 complement(694870..696615) 1 NC_012947.1 synthesizes RNA primers at the replication forks; DNA primase 696615 dnaG 8158694 dnaG Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA primase YP_003034929.1 694870 R 866768 CDS YP_003034930.1 253772099 8158695 complement(696726..696941) 1 NC_012947.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 696941 rpsU 8158695 rpsU Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S21 YP_003034930.1 696726 R 866768 CDS YP_003034931.1 253772100 8158696 697179..698192 1 NC_012947.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 698192 8158696 ECBD_0677 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding/iron metalloprotein/AP endonuclease YP_003034931.1 697179 D 866768 CDS YP_003034932.1 253772101 8158697 complement(698235..699698) 1 NC_012947.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; KEGG: sfv:SFV_3103 hypothetical protein; anion transporter 699698 8158697 ECBD_0678 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anion transporter YP_003034932.1 698235 R 866768 CDS YP_003034933.1 253772102 8158698 complement(699746..700351) 1 NC_012947.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 700351 8158698 ECBD_0679 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L(+)-tartrate dehydratase subunit beta YP_003034933.1 699746 R 866768 CDS YP_003034934.1 253772103 8158699 complement(700348..701259) 1 NC_012947.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 701259 8158699 ECBD_0680 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tartrate dehydratase subunit alpha YP_003034934.1 700348 R 866768 CDS YP_003034935.1 253772104 8158700 701466..702398 1 NC_012947.1 activates expression of genes required for L-tartrate-dependent anaerobic growth on glycerol; transcriptional activator TtdR 702398 8158700 ECBD_0681 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional activator TtdR YP_003034935.1 701466 D 866768 CDS YP_003034936.1 253772105 8158701 complement(702411..703028) 1 NC_012947.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 703028 8158701 ECBD_0682 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate acyltransferase PlsY YP_003034936.1 702411 R 866768 CDS YP_003034937.1 253772106 8158702 703133..703501 1 NC_012947.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 703501 folB 8158702 folB Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_003034937.1 703133 D 866768 CDS YP_003034938.1 253772107 8158703 703592..704413 1 NC_012947.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 704413 8158703 ECBD_0684 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP pyrophosphate phosphatase YP_003034938.1 703592 D 866768 CDS YP_003034939.1 253772108 8158704 complement(704576..705814) 1 NC_012947.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 705814 cca 8158704 cca Escherichia coli 'BL21-Gold(DE3)pLysS AG' multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_003034939.1 704576 R 866768 CDS YP_003034940.1 253772109 8158705 complement(705878..706498) 1 NC_012947.1 SMART: SH3 domain protein; KEGG: sfv:SFV_3095 signal transduction protein; signal transduction protein 706498 8158705 ECBD_0686 Escherichia coli 'BL21-Gold(DE3)pLysS AG' signal transduction protein YP_003034940.1 705878 R 866768 CDS YP_003034941.1 253772110 8158706 706740..708041 1 NC_012947.1 PFAM: adenylate cyclase; CHAD domain containing protein; KEGG: sdy:SDY_3237 hypothetical protein; adenylate cyclase 708041 8158706 ECBD_0687 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenylate cyclase YP_003034941.1 706740 D 866768 CDS YP_003034942.1 253772111 8158707 708064..710904 1 NC_012947.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 710904 8158707 ECBD_0688 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_003034942.1 708064 D 866768 CDS YP_003034943.1 253772112 8158708 710952..712385 1 NC_012947.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 712385 8158708 ECBD_0689 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_003034943.1 710952 D 866768 CDS YP_003034944.1 253772113 8158709 complement(713178..714839) 1 NC_012947.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: ssn:SSON_3188 hypothetical protein; band 7 protein 714839 8158709 ECBD_0690 Escherichia coli 'BL21-Gold(DE3)pLysS AG' band 7 protein YP_003034944.1 713178 R 866768 CDS YP_003034945.1 253772114 8158710 complement(714866..715495) 1 NC_012947.1 PFAM: protein of unknown function DUF1449; hypothetical protein 715495 8158710 ECBD_0691 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034945.1 714866 R 866768 CDS YP_003034946.1 253772115 8158711 715764..715964 1 NC_012947.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 715964 8158711 ECBD_0692 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycogen synthesis protein GlgS YP_003034946.1 715764 D 866768 CDS YP_003034947.1 253772116 8158712 complement(716007..717071) 1 NC_012947.1 KEGG: ssn:SSON_3184 hypothetical protein; hypothetical protein 717071 8158712 ECBD_0693 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034947.1 716007 R 866768 CDS YP_003034948.1 253772117 8158713 complement(717073..717822) 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: ssn:SSON_3183 hypothetical protein; Pili assembly chaperone, N-terminal 717822 8158713 ECBD_0694 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Pili assembly chaperone, N-terminal YP_003034948.1 717073 R 866768 CDS YP_003034949.1 253772118 8158714 complement(717838..720351) 1 NC_012947.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: elf:LF82_p510 hypothetical outer membrane usher protein YqiG; fimbrial biogenesis outer membrane usher protein 720351 8158714 ECBD_0695 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial biogenesis outer membrane usher protein YP_003034949.1 717838 R 866768 CDS YP_003034950.1 253772119 8158715 complement(720402..720953) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: ssn:SSON_3180 predicted fimbrial-like adhesin protein; fimbrial protein 720953 8158715 ECBD_0696 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003034950.1 720402 R 866768 CDS YP_003034951.1 253772120 8158716 complement(721237..721527) 1 NC_012947.1 PFAM: protein of unknown function DUF526; KEGG: sfv:SFV_3086 hypothetical protein; hypothetical protein 721527 8158716 ECBD_0697 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034951.1 721237 R 866768 CDS YP_003034952.1 253772121 8158717 721901..722554 1 NC_012947.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 722554 ribB 8158717 ribB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003034952.1 721901 D 866768 CDS YP_003034953.1 253772122 8158718 722816..722986 1 NC_012947.1 KEGG: sbc:SbBS512_E3475 hypothetical protein; hypothetical protein 722986 8158718 ECBD_0699 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034953.1 722816 D 866768 CDS YP_003034954.1 253772123 8158719 complement(723044..723817) 1 NC_012947.1 PFAM: zinc/iron permease; KEGG: ssn:SSON_3177 zinc transporter ZupT; zinc transporter ZupT 723817 8158719 ECBD_0700 Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc transporter ZupT YP_003034954.1 723044 R 866768 CDS YP_003034955.1 253772124 8158720 723933..724748 1 NC_012947.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein 724748 8158720 ECBD_0701 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034955.1 723933 D 866768 CDS YP_003034956.1 253772125 8158721 complement(724786..725946) 1 NC_012947.1 PFAM: glutathionylspermidine synthase; KEGG: sbc:SbBS512_E3470 glutathionylspermidine synthase family protein; trypanothione synthase 725946 8158721 ECBD_0702 Escherichia coli 'BL21-Gold(DE3)pLysS AG' trypanothione synthase YP_003034956.1 724786 R 866768 CDS YP_003034957.1 253772126 8158722 complement(725952..726623) 1 NC_012947.1 PFAM: protein of unknown function DUF1190; KEGG: sfx:S3282 hypothetical protein; hypothetical protein 726623 8158722 ECBD_0703 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034957.1 725952 R 866768 CDS YP_003034958.1 253772127 8158723 complement(726771..728252) 1 NC_012947.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 728252 tolC 8158723 tolC Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane channel protein YP_003034958.1 726771 R 866768 CDS YP_003034959.1 253772128 8158724 728457..729086 1 NC_012947.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF 729086 nudF 8158724 nudF Escherichia coli 'BL21-Gold(DE3)pLysS AG' ADP-ribose pyrophosphatase NudF YP_003034959.1 728457 D 866768 CDS YP_003034960.1 253772129 8158725 729087..729509 1 NC_012947.1 PFAM: protein of unknown function DUF1249; KEGG: sfv:SFV_3078 hypothetical protein; hypothetical protein 729509 8158725 ECBD_0706 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034960.1 729087 D 866768 CDS YP_003034961.1 253772130 8158726 729534..730361 1 NC_012947.1 PFAM: calcineurin phosphoesterase; metallophosphoesterase; KEGG: sdy:SDY_3208 cyclic 3',5'-adenosine monophosphate phosphodiesterase; cyclic 3',5'-adenosine monophosphate phosphodiesterase 730361 8158726 ECBD_0707 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_003034961.1 729534 D 866768 CDS YP_003034962.1 253772131 8158727 730361..730942 1 NC_012947.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA 730942 8158727 ECBD_0708 Escherichia coli 'BL21-Gold(DE3)pLysS AG' esterase YqiA YP_003034962.1 730361 D 866768 CDS YP_003034963.1 253772132 8158728 730971..732863 1 NC_012947.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 732863 8158728 ECBD_0709 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA topoisomerase IV subunit B YP_003034963.1 730971 D 866768 CDS YP_003034964.1 253772133 8158729 complement(732911..733225) 1 NC_012947.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: sfv:SFV_3074 hypothetical protein; antibiotic biosynthesis monooxygenase 733225 8158729 ECBD_0710 Escherichia coli 'BL21-Gold(DE3)pLysS AG' antibiotic biosynthesis monooxygenase YP_003034964.1 732911 R 866768 CDS YP_003034965.1 253772134 8158730 complement(733256..733837) 1 NC_012947.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ssn:SSON_3166 modulator of drug activity B; NAD(P)H dehydrogenase (quinone) 733837 8158730 ECBD_0711 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD(P)H dehydrogenase (quinone) YP_003034965.1 733256 R 866768 CDS YP_003034966.1 253772135 8158731 734156..734488 1 NC_012947.1 KEGG: sfx:S3272 hypothetical protein; hypothetical protein 734488 8158731 ECBD_0712 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034966.1 734156 D 866768 CDS YP_003034967.1 253772136 8158732 complement(734534..735883) 1 NC_012947.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ssn:SSON_3165 sensor protein QseC; sensor protein QseC 735883 8158732 ECBD_0713 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensor protein QseC YP_003034967.1 734534 R 866768 CDS YP_003034968.1 253772137 8158733 complement(735880..736539) 1 NC_012947.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 736539 8158733 ECBD_0714 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator QseB YP_003034968.1 735880 R 866768 CDS YP_003034969.1 253772138 8158734 736691..737083 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sdy:SDY_3215 hypothetical protein; hypothetical protein 737083 8158734 ECBD_0715 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034969.1 736691 D 866768 CDS YP_003034970.1 253772139 8158735 737136..737618 1 NC_012947.1 PFAM: transcription activator effector binding; KEGG: ssn:SSON_3162 hypothetical protein; transcription activator effector binding 737618 8158735 ECBD_0716 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcription activator effector binding YP_003034970.1 737136 D 866768 CDS YP_003034971.1 253772140 8158736 737823..738119 1 NC_012947.1 KEGG: yps:YPTB3124 hypothetical protein; hypothetical protein 738119 8158736 ECBD_0717 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034971.1 737823 D 866768 CDS YP_003034972.1 253772141 8158737 738121..738516 1 NC_012947.1 SMART: helix-turn-helix domain protein; KEGG: ypb:YPTS_3247 XRE family transcriptional regulator; XRE family transcriptional regulator 738516 8158737 ECBD_0718 Escherichia coli 'BL21-Gold(DE3)pLysS AG' XRE family transcriptional regulator YP_003034972.1 738121 D 866768 CDS YP_003034973.1 253772142 8158738 738649..740256 1 NC_012947.1 YgiS; uncharacterized periplasmic protein that seems to be part of a binding-protein-dependent transporter; binding protein 740256 8158738 ECBD_0719 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding protein YP_003034973.1 738649 D 866768 CDS YP_003034974.1 253772143 8158739 740394..742652 1 NC_012947.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 742652 8158739 ECBD_0720 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA topoisomerase IV subunit A YP_003034974.1 740394 D 866768 CDS YP_003034975.1 253772144 8158740 742683..742838 1 NC_012947.1 hypothetical protein 742838 8158740 ECBD_0721 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034975.1 742683 D 866768 CDS YP_003034976.1 253772145 8158741 742886..743623 1 NC_012947.1 KEGG: sfv:SFV_3067 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 743623 8158741 ECBD_0722 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_003034976.1 742886 D 866768 CDS YP_003034977.1 253772146 8158742 743698..745110 1 NC_012947.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: sbc:SbBS512_E3454 protein SufI; repressor protein for FtsI 745110 8158742 ECBD_0723 Escherichia coli 'BL21-Gold(DE3)pLysS AG' repressor protein for FtsI YP_003034977.1 743698 D 866768 CDS YP_003034978.1 253772147 8158743 745221..747440 1 NC_012947.1 PFAM: radical SAM protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 747440 8158743 ECBD_0724 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034978.1 745221 D 866768 CDS YP_003034979.1 253772148 8159481 complement(747483..747740) 1 NC_012947.1 KEGG: sfv:SFV_3064 outer membrane lipoprotein; outer membrane lipoprotein 747740 8159481 ECBD_0725 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein YP_003034979.1 747483 R 866768 CDS YP_003034980.1 253772149 8159644 complement(747791..748717) 1 NC_012947.1 hypothetical protein 748717 8159644 ECBD_0726 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034980.1 747791 R 866768 CDS YP_003034981.1 253772150 8159645 complement(748802..748915) 1 NC_012947.1 KEGG: sbc:SbBS512_E3441 hypothetical protein; hypothetical protein 748915 8159645 ECBD_0727 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034981.1 748802 R 866768 CDS YP_003034982.1 253772151 8159646 complement(748917..749744) 1 NC_012947.1 methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 749744 dkgA 8159646 dkgA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2,5-diketo-D-gluconate reductase A YP_003034982.1 748917 R 866768 CDS YP_003034983.1 253772152 8159647 complement(749849..751012) 1 NC_012947.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sbc:SbBS512_E3439 alcohol dehydrogenase YqhD; iron-containing alcohol dehydrogenase 751012 8159647 ECBD_0729 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-containing alcohol dehydrogenase YP_003034983.1 749849 R 866768 CDS YP_003034984.1 253772153 8159648 751149..752105 1 NC_012947.1 PFAM: AraC-type transcriptional regulator; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E3437 AraC family transcriptional regulator; AraC family transcriptional regulator 752105 8159648 ECBD_0730 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003034984.1 751149 D 866768 CDS YP_003034985.1 253772154 8159649 complement(752145..752804) 1 NC_012947.1 PFAM: SNARE associated Golgi protein; KEGG: sfv:SFV_3059 hypothetical protein; hypothetical protein 752804 8159649 ECBD_0731 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034985.1 752145 R 866768 CDS YP_003034986.1 253772155 8159650 complement(752944..754131) 1 NC_012947.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 754131 8159650 ECBD_0732 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cystathionine beta-lyase YP_003034986.1 752944 R 866768 CDS YP_003034987.1 253772156 8159651 754383..755117 1 NC_012947.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transporter ExbB 755117 8159651 ECBD_0733 Escherichia coli 'BL21-Gold(DE3)pLysS AG' biopolymer transporter ExbB YP_003034987.1 754383 D 866768 CDS YP_003034988.1 253772157 8159652 755124..755549 1 NC_012947.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transporter ExbD 755549 8159652 ECBD_0734 Escherichia coli 'BL21-Gold(DE3)pLysS AG' biopolymer transporter ExbD YP_003034988.1 755124 D 866768 CDS YP_003034989.1 253772158 8159653 complement(755821..756705) 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbc:SbBS512_E3432 oxidoreductase, short chain dehydrogenase/reductase family; oxidoreductase 756705 8159653 ECBD_0735 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase YP_003034989.1 755821 R 866768 CDS YP_003034990.1 253772159 8159654 756896..757390 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E3431 hypothetical protein; hypothetical protein 757390 8159654 ECBD_0736 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034990.1 756896 D 866768 CDS YP_003034991.1 253772160 8159655 complement(757430..758470) 1 NC_012947.1 PFAM: aldo/keto reductase; KEGG: sfv:SFV_3053 aldo-keto reductase; aldo-keto reductase 758470 8159655 ECBD_0737 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldo-keto reductase YP_003034991.1 757430 R 866768 CDS YP_003034992.1 253772161 8159656 758627..759514 1 NC_012947.1 PFAM: dienelactone hydrolase; KEGG: ssn:SSON_3144 predicted hydrolase; carboxymethylenebutenolidase 759514 8159656 ECBD_0738 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxymethylenebutenolidase YP_003034992.1 758627 D 866768 CDS YP_003034993.1 253772162 8159657 759633..759920 1 NC_012947.1 KEGG: sdy:SDY_3075 hypothetical protein; hypothetical protein 759920 8159657 ECBD_0739 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034993.1 759633 D 866768 CDS YP_003034994.1 253772163 8159658 759917..760102 1 NC_012947.1 KEGG: sea:SeAg_B3324 hypothetical protein; hypothetical protein 760102 8159658 ECBD_0740 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003034994.1 759917 D 866768 CDS YP_003034995.1 253772164 8159659 760109..761227 1 NC_012947.1 involved in hydrogen uptake; hydrogenase 2 small subunit 761227 8159659 ECBD_0741 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 2 small subunit YP_003034995.1 760109 D 866768 CDS YP_003034996.1 253772165 8159660 761230..762216 1 NC_012947.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 762216 8159660 ECBD_0742 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 2 protein HybA YP_003034996.1 761230 D 866768 CDS YP_003034997.1 253772166 8159661 762206..763384 1 NC_012947.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; hydrogenase 2 b cytochrome subunit 763384 8159661 ECBD_0743 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 2 b cytochrome subunit YP_003034997.1 762206 D 866768 CDS YP_003034998.1 253772167 8159662 763381..765084 1 NC_012947.1 involved in hydrogen uptake; hydrogenase 2 large subunit 765084 8159662 ECBD_0744 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 2 large subunit YP_003034998.1 763381 D 866768 CDS YP_003034999.1 253772168 8159663 765084..765578 1 NC_012947.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 765578 hybD 8159663 hybD Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 2 maturation endopeptidase YP_003034999.1 765084 D 866768 CDS YP_003035000.1 253772169 8159664 765571..766059 1 NC_012947.1 KEGG: sbc:SbBS512_E3419 hydrogenase-2 operon protein HybE; hydrogenase 2-specific chaperone 766059 8159664 ECBD_0746 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 2-specific chaperone YP_003035000.1 765571 D 866768 CDS YP_003035001.1 253772170 8159665 766052..766393 1 NC_012947.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 766393 8159665 ECBD_0747 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase nickel incorporation protein HybF YP_003035001.1 766052 D 866768 CDS YP_003035002.1 253772171 8159666 766406..766654 1 NC_012947.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: sdy:SDY_3083 hydrogenase 2 accessory protein HypG; hydrogenase 2 accessory protein HypG 766654 8159666 ECBD_0748 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 2 accessory protein HypG YP_003035002.1 766406 D 866768 CDS YP_003035003.1 253772172 8159667 complement(766777..767643) 1 NC_012947.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase YghU 767643 8159667 ECBD_0749 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione S-transferase YghU YP_003035003.1 766777 R 866768 CDS YP_003035004.1 253772173 8159668 767848..769707 1 NC_012947.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 769707 8159668 ECBD_0750 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_003035004.1 767848 D 866768 CDS YP_003035005.1 253772174 8159669 769999..771498 1 NC_012947.1 PFAM: phosphate transporter; KEGG: ssn:SSON_3132 low-affinity phosphate transport; phosphate transporter 771498 8159669 ECBD_0751 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate transporter YP_003035005.1 769999 D 866768 CDS YP_003035006.1 253772175 8159670 complement(771547..772239) 1 NC_012947.1 KEGG: sfx:S3234 hypothetical protein; hypothetical protein 772239 8159670 ECBD_0752 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035006.1 771547 R 866768 CDS YP_003035007.1 253772176 8159671 772428..773126 1 NC_012947.1 KEGG: elf:LF82_3207 uncharacterized ATP-binding protein YghS; ATP-binding protein 773126 8159671 ECBD_0753 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-binding protein YP_003035007.1 772428 D 866768 CDS YP_003035008.1 253772177 8159672 773158..773916 1 NC_012947.1 hypothetical protein 773916 8159672 ECBD_0754 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035008.1 773158 D 866768 CDS YP_003035009.1 253772178 8159673 773962..775029 1 NC_012947.1 PFAM: polysaccharide biosynthesis protein; KEGG: elf:LF82_3205 inner membrane protein YghQ; polysaccharide biosynthesis protein 775029 8159673 ECBD_0755 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polysaccharide biosynthesis protein YP_003035009.1 773962 D 866768 CDS YP_003035010.1 253772179 8159674 complement(775176..776156) 1 NC_012947.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 776156 8159674 ECBD_0756 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003035010.1 775176 R 866768 CDS YP_003035011.1 253772180 8159675 776191..777327 1 NC_012947.1 hypothetical protein 777327 8159675 ECBD_0757 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035011.1 776191 D 866768 CDS YP_003035012.1 253772181 8159676 complement(777334..778098) 1 NC_012947.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GlcC family transcriptional regulator 778098 8159676 ECBD_0758 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GlcC family transcriptional regulator YP_003035012.1 777334 R 866768 CDS YP_003035013.1 253772182 8159677 778349..779848 1 NC_012947.1 TIGRFAM: glycolate oxidase subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: elf:LF82_0831 glycolate oxidase subunit GlcD; glycolate oxidase subunit GlcD 779848 8159677 ECBD_0759 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycolate oxidase subunit GlcD YP_003035013.1 778349 D 866768 CDS YP_003035014.1 253772183 8159678 779848..780900 1 NC_012947.1 PFAM: FAD linked oxidase; KEGG: elf:LF82_0832 glycolate oxidase subunit GlcE; glycolate oxidase FAD binding subunit 780900 glcE 8159678 glcE Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycolate oxidase FAD binding subunit YP_003035014.1 779848 D 866768 CDS YP_003035015.1 253772184 8159679 780911..782134 1 NC_012947.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: elf:LF82_0833 glycolate oxidase iron-sulfur subunit; glycolate oxidase iron-sulfur subunit 782134 glcF 8159679 glcF Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycolate oxidase iron-sulfur subunit YP_003035015.1 780911 D 866768 CDS YP_003035016.1 253772185 8159680 782139..782543 1 NC_012947.1 PFAM: protein of unknown function DUF336; KEGG: sfv:SFV_3032 hypothetical protein; hypothetical protein 782543 8159680 ECBD_0762 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035016.1 782139 D 866768 CDS YP_003035017.1 253772186 8159681 782565..784736 1 NC_012947.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 784736 8159681 ECBD_0763 Escherichia coli 'BL21-Gold(DE3)pLysS AG' malate synthase G YP_003035017.1 782565 D 866768 CDS YP_003035018.1 253772187 8159682 785091..786773 1 NC_012947.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; glycolate transporter 786773 8159682 ECBD_0764 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycolate transporter YP_003035018.1 785091 D 866768 CDS YP_003035019.1 253772188 8159683 787258..791820 1 NC_012947.1 KEGG: elf:LF82_3203 lipoprotein AcfD homolog; lipoprotein AcfD-like protein 791820 8159683 ECBD_0765 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein AcfD-like protein YP_003035019.1 787258 D 866768 CDS YP_003035020.1 253772189 8159684 792018..792827 1 NC_012947.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: efe:EFER_2912 bifunctional prepilin leader peptidase and methylase; prepilin peptidase 792827 8159684 ECBD_0766 Escherichia coli 'BL21-Gold(DE3)pLysS AG' prepilin peptidase YP_003035020.1 792018 D 866768 CDS YP_003035021.1 253772190 8159685 792893..793303 1 NC_012947.1 KEGG: elf:LF82_3202 uncharacterized lipoprotein YghG; hypothetical protein 793303 8159685 ECBD_0767 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035021.1 792893 D 866768 CDS YP_003035022.1 253772191 8159686 793321..794316 1 NC_012947.1 part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm; type II secretion protein GspC 794316 8159686 ECBD_0768 Escherichia coli 'BL21-Gold(DE3)pLysS AG' type II secretion protein GspC YP_003035022.1 793321 D 866768 CDS YP_003035023.1 253772192 8159687 794382..795242 1 NC_012947.1 TIGRFAM: general secretion pathway protein L; PFAM: general secretion pathway L; KEGG: sbc:SbBS512_E3404 general secretion pathway protein GspL; general secretion pathway protein L 795242 8159687 ECBD_0769 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein L YP_003035023.1 794382 D 866768 CDS YP_003035024.1 253772193 8159688 795244..795780 1 NC_012947.1 PFAM: general secretion pathway M protein; KEGG: sbc:SbBS512_E3403 general secretion pathway protein M; general secretion pathway protein YghD 795780 8159688 ECBD_0770 Escherichia coli 'BL21-Gold(DE3)pLysS AG' general secretion pathway protein YghD YP_003035024.1 795244 D 866768 CDS YP_003035025.1 253772194 8159690 complement(796110..796817) 1 NC_012947.1 PFAM: protein of unknown function DUF554; KEGG: ssn:SSON_3229 transporter; hypothetical protein 796817 8159690 ECBD_0771 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035025.1 796110 R 866768 CDS YP_003035026.1 253772195 8159691 797215..799350 1 NC_012947.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: elf:LF82_2159 ornithine decarboxylase, constitutive; ornithine decarboxylase 799350 8159691 ECBD_0772 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ornithine decarboxylase YP_003035026.1 797215 D 866768 CDS YP_003035027.1 253772196 8159693 complement(800015..801223) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: seh:SeHA_C4716 transposase (IS4 family); transposase IS4 family protein 801223 8159693 ECBD_0774 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003035027.1 800015 R 866768 CDS YP_003035028.1 253772197 8159694 complement(801353..802561) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: apa:APP7_1819 iso-IS10R ORF; transposase IS4 family protein 802561 8159694 ECBD_0775 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003035028.1 801353 R 866768 CDS YP_003035029.1 253772198 8159695 complement(803534..804616) 1 NC_012947.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 804616 mltC 8159695 mltC Escherichia coli 'BL21-Gold(DE3)pLysS AG' murein transglycosylase C YP_003035029.1 803534 R 866768 CDS YP_003035030.1 253772199 8159696 complement(804678..804953) 1 NC_012947.1 PFAM: Fe(II) trafficking protein YggX; KEGG: sfv:SFV_3020 hypothetical protein; hypothetical protein 804953 8159696 ECBD_0777 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035030.1 804678 R 866768 CDS YP_003035031.1 253772200 8159697 complement(804981..806033) 1 NC_012947.1 KEGG: sbo:SBO_3029 adenine DNA glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; adenine DNA glycosylase 806033 8159697 ECBD_0778 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenine DNA glycosylase YP_003035031.1 804981 R 866768 CDS YP_003035032.1 253772201 8159698 806194..806913 1 NC_012947.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 806913 trmB 8159698 trmB Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA (guanine-N(7)-)-methyltransferase YP_003035032.1 806194 D 866768 CDS YP_003035033.1 253772202 8159699 806913..807239 1 NC_012947.1 PFAM: protein of unknown function DUF469; KEGG: sdy:SDY_3113 hypothetical protein; hypothetical protein 807239 8159699 ECBD_0780 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035033.1 806913 D 866768 CDS YP_003035034.1 253772203 8159700 807262..807402 1 NC_012947.1 KEGG: sbc:SbBS512_E3391 hypothetical protein; hypothetical protein 807402 8159700 ECBD_0781 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035034.1 807262 D 866768 CDS YP_003035035.1 253772204 8159701 807423..808142 1 NC_012947.1 KEGG: sdy:SDY_3114 hypothetical protein; hypothetical protein 808142 8159701 ECBD_0782 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035035.1 807423 D 866768 CDS YP_003035036.1 253772205 8159702 808318..809364 1 NC_012947.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II 809364 ansB 8159702 ansB Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-asparaginase II YP_003035036.1 808318 D 866768 CDS YP_003035037.1 253772206 8159703 809481..810488 1 NC_012947.1 PFAM: protein of unknown function DUF1202; KEGG: sbc:SbBS512_E3388 hypothetical protein; hypothetical protein 810488 8159703 ECBD_0784 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035037.1 809481 D 866768 CDS YP_003035038.1 253772207 8159704 complement(810643..811779) 1 NC_012947.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 811779 8159704 ECBD_0785 Escherichia coli 'BL21-Gold(DE3)pLysS AG' coproporphyrinogen III oxidase YP_003035038.1 810643 R 866768 CDS YP_003035039.1 253772208 8159705 complement(811772..812365) 1 NC_012947.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 812365 8159705 ECBD_0786 Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxyribonucleotide triphosphate pyrophosphatase YP_003035039.1 811772 R 866768 CDS YP_003035040.1 253772209 8159706 complement(812373..812663) 1 NC_012947.1 PFAM: protein of unknown function DUF167; KEGG: sbc:SbBS512_E3385 hypothetical protein; hypothetical protein 812663 8159706 ECBD_0787 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035040.1 812373 R 866768 CDS YP_003035041.1 253772210 8159707 complement(812660..813226) 1 NC_012947.1 PFAM: protein of unknown function YGGT; KEGG: sdy:SDY_3120 resistance protein; hypothetical protein 813226 8159707 ECBD_0788 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035041.1 812660 R 866768 CDS YP_003035042.1 253772211 8159708 complement(813244..813948) 1 NC_012947.1 PFAM: alanine racemase domain protein; KEGG: sfv:SFV_3005 hypothetical protein; alanine racemase domain protein 813948 8159708 ECBD_0789 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alanine racemase domain protein YP_003035042.1 813244 R 866768 CDS YP_003035043.1 253772212 8159709 813966..814946 1 NC_012947.1 KEGG: sfv:SFV_3004 transporter; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA; twitching motility protein 814946 8159709 ECBD_0790 Escherichia coli 'BL21-Gold(DE3)pLysS AG' twitching motility protein YP_003035043.1 813966 D 866768 CDS YP_003035044.1 253772213 8159710 complement(815130..815546) 1 NC_012947.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 815546 8159710 ECBD_0791 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Holliday junction resolvase-like protein YP_003035044.1 815130 R 866768 CDS YP_003035045.1 253772214 8159711 complement(815546..816181) 1 NC_012947.1 PFAM: protein of unknown function DUF179; KEGG: sfv:SFV_3002 hypothetical protein; hypothetical protein 816181 8159711 ECBD_0792 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035045.1 815546 R 866768 CDS YP_003035046.1 253772215 8159712 complement(816218..817168) 1 NC_012947.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 817168 8159712 ECBD_0793 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione synthetase YP_003035046.1 816218 R 866768 CDS YP_003035047.1 253772216 8159713 complement(817181..817912) 1 NC_012947.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 817912 8159713 ECBD_0794 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 16S ribosomal RNA methyltransferase RsmE YP_003035047.1 817181 R 866768 CDS YP_003035048.1 253772217 8159714 complement(817992..818699) 1 NC_012947.1 PFAM: endonuclease I; KEGG: sbc:SbBS512_E3377 endonuclease I; deoxyribonuclease I 818699 8159714 ECBD_0795 Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxyribonuclease I YP_003035048.1 817992 R 866768 CDS YP_003035049.1 253772218 8159715 complement(818794..819291) 1 NC_012947.1 PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: sbo:SBO_3046 hypothetical protein; hypothetical protein 819291 8159715 ECBD_0796 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035049.1 818794 R 866768 CDS YP_003035050.1 253772219 8159716 complement(819368..820762) 1 NC_012947.1 TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_3129 galactose-proton symport of transporter; sugar transporter 820762 8159716 ECBD_0797 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar transporter YP_003035050.1 819368 R 866768 CDS YP_003035051.1 253772220 8159717 complement(821186..822340) 1 NC_012947.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 822340 8159717 ECBD_0798 Escherichia coli 'BL21-Gold(DE3)pLysS AG' S-adenosylmethionine synthetase YP_003035051.1 821186 R 866768 CDS YP_003035052.1 253772221 8159718 822396..822647 1 NC_012947.1 KEGG: sfv:SFV_2995 hypothetical protein; hypothetical protein 822647 8159718 ECBD_0799 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035052.1 822396 D 866768 CDS YP_003035053.1 253772222 8159719 823135..825111 1 NC_012947.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 825111 8159719 ECBD_0800 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine decarboxylase YP_003035053.1 823135 D 866768 CDS YP_003035054.1 253772223 8159720 825249..826169 1 NC_012947.1 catalyzes the formation of putrescine from agmatine; agmatinase 826169 8159720 ECBD_0801 Escherichia coli 'BL21-Gold(DE3)pLysS AG' agmatinase YP_003035054.1 825249 D 866768 CDS YP_003035055.1 253772224 8159721 complement(826375..827133) 1 NC_012947.1 PFAM: peptidase M48 Ste24p; KEGG: sbc:SbBS512_E3369 peptidase, M48B family; peptidase M48 Ste24p 827133 8159721 ECBD_0802 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase M48 Ste24p YP_003035055.1 826375 R 866768 CDS YP_003035056.1 253772225 8159722 827411..829402 1 NC_012947.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 829402 8159722 ECBD_0803 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transketolase YP_003035056.1 827411 D 866768 CDS YP_003035057.1 253772226 8159723 829536..829706 1 NC_012947.1 hypothetical protein 829706 8159723 ECBD_0804 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035057.1 829536 D 866768 CDS YP_003035058.1 253772227 8159724 829716..830159 1 NC_012947.1 TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; mannitol phosphotransferase subunit EIIA 830159 cmtB 8159724 cmtB Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannitol phosphotransferase subunit EIIA YP_003035058.1 829716 D 866768 CDS YP_003035059.1 253772228 8159726 830187..831575 1 NC_012947.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sbc:SbBS512_E3365 PTS system, mannitol-specific cryptic EIICB component; PTS system, mannitol-specific IIC subunit 831575 8159726 ECBD_0806 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, mannitol-specific IIC subunit YP_003035059.1 830187 D 866768 CDS YP_003035060.1 253772229 8159727 831590..832867 1 NC_012947.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein 832867 8159727 ECBD_0807 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase zinc-binding domain protein YP_003035060.1 831590 D 866768 CDS YP_003035061.1 253772230 8159728 832864..833829 1 NC_012947.1 KEGG: sfv:SFV_2982 fructose-1,6-bisphosphatase II-like protein; TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; fructose-1,6-bisphosphatase II-like protein 833829 8159728 ECBD_0808 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-1,6-bisphosphatase II-like protein YP_003035061.1 832864 D 866768 CDS YP_003035062.1 253772231 8159729 833851..834360 1 NC_012947.1 PFAM: Mannitol repressor; KEGG: sbo:SBO_3059 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 834360 8159729 ECBD_0809 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003035062.1 833851 D 866768 CDS YP_003035063.1 253772232 8159730 834357..835070 1 NC_012947.1 KEGG: efe:EFER_2860 conserved hypothetical protein; nucleoside triphosphate hydrolase domain; fructose transporter kinase 835070 frcK 8159730 frcK Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose transporter kinase YP_003035063.1 834357 D 866768 CDS YP_003035064.1 253772233 8159731 835355..836374 1 NC_012947.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 836374 8159731 ECBD_0811 Escherichia coli 'BL21-Gold(DE3)pLysS AG' erythrose 4-phosphate dehydrogenase YP_003035064.1 835355 D 866768 CDS YP_003035065.1 253772234 8159732 836424..837587 1 NC_012947.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 837587 pgk 8159732 pgk Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglycerate kinase YP_003035065.1 836424 D 866768 CDS YP_003035066.1 253772235 8159733 837802..838881 1 NC_012947.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 838881 8159733 ECBD_0813 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-bisphosphate aldolase YP_003035066.1 837802 D 866768 CDS YP_003035067.1 253772236 8159734 839239..840099 1 NC_012947.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS 840099 8159734 ECBD_0814 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mechanosensitive channel MscS YP_003035067.1 839239 D 866768 CDS YP_003035068.1 253772237 8159735 840238..840873 1 NC_012947.1 Involved in the export of arginine; arginine exporter protein 840873 8159735 ECBD_0815 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine exporter protein YP_003035068.1 840238 D 866768 CDS YP_003035069.1 253772238 8159736 840966..841706 1 NC_012947.1 PFAM: protein of unknown function DUF541; KEGG: sdy:SDY_3160 hypothetical protein; hypothetical protein 841706 8159736 ECBD_0816 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035069.1 840966 D 866768 CDS YP_003035070.1 253772239 8159737 841873..842769 1 NC_012947.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E3344 transcriptional regulator, LysR family; LysR family transcriptional regulator 842769 8159737 ECBD_0817 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003035070.1 841873 D 866768 CDS YP_003035071.1 253772240 8159738 complement(842766..844244) 1 NC_012947.1 KEGG: ssn:SSON_3071 coenzyme A transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 844244 8159738 ECBD_0818 Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinate CoA transferase YP_003035071.1 842766 R 866768 CDS YP_003035072.1 253772241 8159739 complement(844268..845053) 1 NC_012947.1 catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA; methylmalonyl-CoA decarboxylase 845053 8159739 ECBD_0819 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methylmalonyl-CoA decarboxylase YP_003035072.1 844268 R 866768 CDS YP_003035073.1 253772242 8159740 complement(845064..846059) 1 NC_012947.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transporters, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transporter ATPase 846059 8159740 ECBD_0820 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine/ornithine transporter ATPase YP_003035073.1 845064 R 866768 CDS YP_003035074.1 253772243 8159741 complement(846052..848196) 1 NC_012947.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 848196 8159741 ECBD_0821 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methylmalonyl-CoA mutase YP_003035074.1 846052 R 866768 CDS YP_003035075.1 253772244 8159742 complement(848400..849293) 1 NC_012947.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 849293 8159742 ECBD_0822 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome replication initiation inhibitor protein YP_003035075.1 848400 R 866768 CDS YP_003035076.1 253772245 8159743 849435..849665 1 NC_012947.1 KEGG: elf:LF82_3651 uncharacterized protein YqfE; hypothetical protein 849665 8159743 ECBD_0823 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035076.1 849435 D 866768 CDS YP_003035077.1 253772246 8159744 849721..850380 1 NC_012947.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 850380 8159744 ECBD_0824 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribose-5-phosphate isomerase A YP_003035077.1 849721 D 866768 CDS YP_003035078.1 253772247 8159745 850636..851868 1 NC_012947.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 851868 8159745 ECBD_0825 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-3-phosphoglycerate dehydrogenase YP_003035078.1 850636 D 866768 CDS YP_003035079.1 253772248 8159746 complement(852257..852859) 1 NC_012947.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 852859 8159746 ECBD_0826 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ligase YP_003035079.1 852257 R 866768 CDS YP_003035080.1 253772249 8159748 complement(853105..853434) 1 NC_012947.1 PFAM: protein of unknown function DUF710; KEGG: sfv:SFV_2958 Z-ring-associated protein; Z-ring-associated protein 853434 8159748 ECBD_0827 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Z-ring-associated protein YP_003035080.1 853105 R 866768 CDS YP_003035081.1 253772250 8159749 853596..854180 1 NC_012947.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 854180 8159749 ECBD_0828 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035081.1 853596 D 866768 CDS YP_003035082.1 253772251 8159750 854206..855531 1 NC_012947.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 855531 8159750 ECBD_0829 Escherichia coli 'BL21-Gold(DE3)pLysS AG' proline aminopeptidase P II YP_003035082.1 854206 D 866768 CDS YP_003035083.1 253772252 8159751 855528..856706 1 NC_012947.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 856706 8159751 ECBD_0830 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-octaprenyl-6-methoxyphenyl hydroxylase YP_003035083.1 855528 D 866768 CDS YP_003035084.1 253772253 8159752 856729..857931 1 NC_012947.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ssn:SSON_3059 hypothetical protein; hypothetical protein 857931 8159752 ECBD_0831 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035084.1 856729 D 866768 CDS YP_003035085.1 253772254 8159753 858378..859472 1 NC_012947.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 859472 gcvT 8159753 gcvT Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycine cleavage system aminomethyltransferase T YP_003035085.1 858378 D 866768 CDS YP_003035086.1 253772255 8159754 859496..859885 1 NC_012947.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 859885 8159754 ECBD_0833 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycine cleavage system protein H YP_003035086.1 859496 D 866768 CDS YP_003035087.1 253772256 8159755 860004..862877 1 NC_012947.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 862877 8159755 ECBD_0834 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycine dehydrogenase YP_003035087.1 860004 D 866768 CDS YP_003035088.1 253772257 8159756 863143..863886 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sbc:SbBS512_E3323 NAD dependent epimerase/dehydratase family; hypothetical protein 863886 8159756 ECBD_0835 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035088.1 863143 D 866768 CDS YP_003035089.1 253772258 8159757 complement(863943..865376) 1 NC_012947.1 PFAM: glycoside hydrolase family 1; KEGG: sbo:SBO_3091 6-phospho-beta-glucosidase A; cryptic; glycoside hydrolase family 1 865376 8159757 ECBD_0836 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase family 1 YP_003035089.1 863943 R 866768 CDS YP_003035090.1 253772259 8159758 865421..865732 1 NC_012947.1 PFAM: protein of unknown function DUF437; KEGG: ssn:SSON_3053 hypothetical protein; hypothetical protein 865732 8159758 ECBD_0837 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035090.1 865421 D 866768 CDS YP_003035091.1 253772260 8159759 865896..866555 1 NC_012947.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: sbc:SbBS512_E3320 channel protein, hemolysin III family; channel protein, hemolysin III family 866555 8159759 ECBD_0838 Escherichia coli 'BL21-Gold(DE3)pLysS AG' channel protein, hemolysin III family YP_003035091.1 865896 D 866768 CDS YP_003035092.1 253772261 8159760 complement(866751..867731) 1 NC_012947.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 867731 8159760 ECBD_0839 Escherichia coli 'BL21-Gold(DE3)pLysS AG' global regulator YP_003035092.1 866751 R 866768 CDS YP_003035093.1 253772262 8159761 867974..868240 1 NC_012947.1 PFAM: protein of unknown function DUF339; KEGG: sbo:SBO_3095 hypothetical protein; hypothetical protein 868240 8159761 ECBD_0840 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035093.1 867974 D 866768 CDS YP_003035094.1 253772263 8159762 868221..868628 1 NC_012947.1 PFAM: protein of unknown function DUF1434; KEGG: sbc:SbBS512_E3316 hypothetical protein; hypothetical protein 868628 8159762 ECBD_0841 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035094.1 868221 D 866768 CDS YP_003035095.1 253772264 8159763 complement(868668..869189) 1 NC_012947.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 869189 8159763 ECBD_0842 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flavodoxin FldB YP_003035095.1 868668 R 866768 CDS YP_003035096.1 253772265 8159764 869301..870197 1 NC_012947.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 870197 xerD 8159764 xerD Escherichia coli 'BL21-Gold(DE3)pLysS AG' site-specific tyrosine recombinase XerD YP_003035096.1 869301 D 866768 CDS YP_003035097.1 253772266 8159765 870222..870932 1 NC_012947.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 870932 8159765 ECBD_0844 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiol:disulfide interchange protein DsbC YP_003035097.1 870222 D 866768 CDS YP_003035098.1 253772267 8159766 870938..872671 1 NC_012947.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 872671 8159766 ECBD_0845 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ssDNA exonuclease RecJ YP_003035098.1 870938 D 866768 CDS YP_003035099.1 253772268 8159767 join(872762..872836,872838..873860) 1 NC_012947.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 873860 prfB 8159767 prfB Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide chain release factor 2 YP_003035099.1 872762 D 866768 CDS YP_003035100.1 253772269 8159768 873870..875387 1 NC_012947.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 875387 lysS 8159768 lysS Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysyl-tRNA synthetase YP_003035100.1 873870 D 866768 CDS YP_003035101.1 253772270 8159769 complement(875430..875978) 1 NC_012947.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 875978 8159769 ECBD_0848 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isopentenyl-diphosphate delta-isomerase YP_003035101.1 875430 R 866768 CDS YP_003035102.1 253772271 8159770 complement(876101..876226) 1 NC_012947.1 KEGG: sbc:SbBS512_E3307 hypothetical protein; hypothetical protein 876226 8159770 ECBD_0849 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035102.1 876101 R 866768 CDS YP_003035103.1 253772272 8159771 complement(876228..877676) 1 NC_012947.1 TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; xanthine permease 877676 8159771 ECBD_0850 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine permease YP_003035103.1 876228 R 866768 CDS YP_003035104.1 253772273 8159772 878112..880031 1 NC_012947.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); oxidoreductase Fe-S binding subunit 880031 8159772 ECBD_0851 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase Fe-S binding subunit YP_003035104.1 878112 D 866768 CDS YP_003035105.1 253772274 8159773 880031..880519 1 NC_012947.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ssn:SSON_3038 oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein 880519 8159773 ECBD_0852 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003035105.1 880031 D 866768 CDS YP_003035106.1 253772275 8159774 complement(880555..881922) 1 NC_012947.1 PFAM: xanthine/uracil/vitamin C permease; sulfate transporter; xanthine/uracil/vitamin C permease 881922 8159774 ECBD_0853 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine/uracil/vitamin C permease YP_003035106.1 880555 R 866768 CDS YP_003035107.1 253772276 8159775 complement(881958..883274) 1 NC_012947.1 Catalyzes the deamination of guanine; guanine deaminase 883274 8159775 ECBD_0854 Escherichia coli 'BL21-Gold(DE3)pLysS AG' guanine deaminase YP_003035107.1 881958 R 866768 CDS YP_003035108.1 253772277 8159776 complement(883292..884692) 1 NC_012947.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: xanthine/uracil/vitamin C permease; uracil-xanthine permease 884692 8159776 ECBD_0855 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uracil-xanthine permease YP_003035108.1 883292 R 866768 CDS YP_003035109.1 253772278 8159777 complement(884857..887727) 1 NC_012947.1 with YgfK and YgfM forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; molybdopterin-containing enzyme; oxidase activity toward hypoxanthine and xanthine can be detected if these substrates are present at high concentration; selenate reductase subunit YgfN 887727 8159777 ECBD_0856 Escherichia coli 'BL21-Gold(DE3)pLysS AG' selenate reductase subunit YgfN YP_003035109.1 884857 R 866768 CDS YP_003035110.1 253772279 8159778 complement(887724..888503) 1 NC_012947.1 with YgfK and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfM contains a FAD domain; selenate reductase subunit YgfM 888503 8159778 ECBD_0857 Escherichia coli 'BL21-Gold(DE3)pLysS AG' selenate reductase subunit YgfM YP_003035110.1 887724 R 866768 CDS YP_003035111.1 253772280 8159779 complement(888554..889882) 1 NC_012947.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; chlorohydrolase/aminohydrolase 889882 8159779 ECBD_0858 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chlorohydrolase/aminohydrolase YP_003035111.1 888554 R 866768 CDS YP_003035112.1 253772281 8159780 complement(889885..892983) 1 NC_012947.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; selenate reductase subunit YgfK 892983 8159780 ECBD_0859 Escherichia coli 'BL21-Gold(DE3)pLysS AG' selenate reductase subunit YgfK YP_003035112.1 889885 R 866768 CDS YP_003035113.1 253772282 8159781 complement(893304..893882) 1 NC_012947.1 TIGRFAM: molybdenum hydroxylase accessory protein, YgfJ family; KEGG: elf:LF82_3171 uncharacterized protein YgfJ; molybdenum hydroxylase accessory protein, YgfJ family 893882 8159781 ECBD_0860 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdenum hydroxylase accessory protein, YgfJ family YP_003035113.1 893304 R 866768 CDS YP_003035114.1 253772283 8159782 893985..894755 1 NC_012947.1 hypothetical protein 894755 8159782 ECBD_0861 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035114.1 893985 D 866768 CDS YP_003035115.1 253772284 8159783 894803..896428 1 NC_012947.1 TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; PFAM: protein of unknown function DUF182; biotin/lipoyl attachment domain-containing protein; KEGG: sbo:SBO_3109 synthase; selenium-dependent molybdenum hydroxylase system protein, YqeB family 896428 8159783 ECBD_0862 Escherichia coli 'BL21-Gold(DE3)pLysS AG' selenium-dependent molybdenum hydroxylase system protein, YqeB family YP_003035115.1 894803 D 866768 CDS YP_003035116.1 253772285 8159784 complement(896649..897581) 1 NC_012947.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 897581 8159784 ECBD_0863 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbamate kinase YP_003035116.1 896649 R 866768 CDS YP_003035117.1 253772286 8159785 complement(897629..899014) 1 NC_012947.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 899014 8159785 ECBD_0864 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phenylhydantoinase YP_003035117.1 897629 R 866768 CDS YP_003035118.1 253772287 8159786 complement(899067..900278) 1 NC_012947.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 900278 8159786 ECBD_0865 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase YP_003035118.1 899067 R 866768 CDS YP_003035119.1 253772288 8159787 complement(900336..901532) 1 NC_012947.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 901532 8159787 ECBD_0866 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diaminopropionate ammonia-lyase YP_003035119.1 900336 R 866768 CDS YP_003035120.1 253772289 8159788 complement(901590..902777) 1 NC_012947.1 TIGRFAM: carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: elf:LF82_3165 uncharacterized protein YgeW; aspartate/ornithine carbamoyltransferase family protein 902777 8159788 ECBD_0867 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aspartate/ornithine carbamoyltransferase family protein YP_003035120.1 901590 R 866768 CDS YP_003035121.1 253772290 8159789 903256..905034 1 NC_012947.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; PAS domain containing protein; KEGG: ssn:SSON_3020 transcriptional regulator; PAS modulated sigma54 specific transcriptional regulator, Fis family 905034 8159789 ECBD_0868 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PAS modulated sigma54 specific transcriptional regulator, Fis family YP_003035121.1 903256 D 866768 CDS YP_003035122.1 253772291 8159790 complement(905074..905553) 1 NC_012947.1 iron-sulfur-binding subunit; with XdhA and XdhB participates in purine salvage; xanthine dehydrogenase subunit XdhC 905553 8159790 ECBD_0869 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine dehydrogenase subunit XdhC YP_003035122.1 905074 R 866768 CDS YP_003035123.1 253772292 8159791 complement(905550..906428) 1 NC_012947.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage; xanthine dehydrogenase subunit XdhB 906428 8159791 ECBD_0870 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine dehydrogenase subunit XdhB YP_003035123.1 905550 R 866768 CDS YP_003035124.1 253772293 8159792 complement(906439..908736) 1 NC_012947.1 molybdenum cofactor-binding protein; participates in purine salvage; xanthine dehydrogenase subunit XdhA 908736 8159792 ECBD_0871 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine dehydrogenase subunit XdhA YP_003035124.1 906439 R 866768 CDS YP_003035125.1 253772294 8159793 909151..909906 1 NC_012947.1 PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: elf:LF82_3163 uncharacterized lipoprotein YgeR; peptidase M23 909906 8159793 ECBD_0872 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase M23 YP_003035125.1 909151 D 866768 CDS YP_003035126.1 253772295 8159795 910296..910847 1 NC_012947.1 KEGG: sfv:SFV_2926 hypothetical protein; hypothetical protein 910847 8159795 ECBD_0873 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035126.1 910296 D 866768 CDS YP_003035127.1 253772296 8159796 complement(910861..911727) 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: sfv:SFV_1039 IS3 ORF2; Integrase catalytic region 911727 8159796 ECBD_0874 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003035127.1 910861 R 866768 CDS YP_003035128.1 253772297 8159797 complement(911724..912023) 1 NC_012947.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 912023 8159797 ECBD_0875 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS3/IS911 family protein YP_003035128.1 911724 R 866768 CDS YP_003035129.1 253772298 8159798 complement(912070..912639) 1 NC_012947.1 KEGG: ssn:SSON_3006 hypothetical protein; hypothetical protein 912639 8159798 ECBD_0876 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035129.1 912070 R 866768 CDS YP_003035130.1 253772299 8159799 complement(913099..914328) 1 NC_012947.1 TIGRFAM: serine transporter; PFAM: Amino acid transporter transmembrane; KEGG: elf:LF82_3648 inner membrane transporter YqeG; serine transporter 914328 8159799 ECBD_0877 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine transporter YP_003035130.1 913099 R 866768 CDS YP_003035131.1 253772300 8159800 914584..915765 1 NC_012947.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 915765 8159800 ECBD_0878 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl-CoA acetyltransferase YP_003035131.1 914584 D 866768 CDS YP_003035132.1 253772301 8159801 916052..916888 1 NC_012947.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 916888 8159801 ECBD_0879 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5-keto-4-deoxyuronate isomerase YP_003035132.1 916052 D 866768 CDS YP_003035133.1 253772302 8159803 complement(917511..918362) 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: sfv:SFV_3530 IS150 ORF2; Integrase catalytic region 918362 8159803 ECBD_0881 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003035133.1 917511 R 866768 CDS YP_003035134.1 253772303 8159804 complement(918359..918880) 1 NC_012947.1 KEGG: sfx:S1483 IS103 orf; IS103 orf 918880 8159804 ECBD_0882 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS103 orf YP_003035134.1 918359 R 866768 CDS YP_003035135.1 253772304 8156698 919440..920858 1 NC_012947.1 TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_3001 low-affinity L-arabinose transporter proton symport protein; sugar transporter 920858 8156698 ECBD_0883 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar transporter YP_003035135.1 919440 D 866768 CDS YP_003035136.1 253772305 8156699 920987..921679 1 NC_012947.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: sbc:SbBS512_E3023 Asp/Glu/hydantoin racemase; racemase 921679 8156699 ECBD_0884 Escherichia coli 'BL21-Gold(DE3)pLysS AG' racemase YP_003035136.1 920987 D 866768 CDS YP_003035137.1 253772306 8156700 complement(921666..922601) 1 NC_012947.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator 922601 8156700 ECBD_0885 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003035137.1 921666 R 866768 CDS YP_003035138.1 253772307 8156701 922723..923985 1 NC_012947.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 923985 8156701 ECBD_0886 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diaminopimelate decarboxylase YP_003035138.1 922723 D 866768 CDS YP_003035139.1 253772308 8156702 complement(923992..925023) 1 NC_012947.1 controls transcription of galETKM; DNA-binding transcriptional regulator GalR 925023 8156702 ECBD_0887 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator GalR YP_003035139.1 923992 R 866768 CDS YP_003035140.1 253772309 8156703 925609..927768 1 NC_012947.1 transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 927768 8156703 ECBD_0888 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_003035140.1 925609 D 866768 CDS YP_003035141.1 253772310 8156704 927761..928954 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3027 lysophospholipid transporter; lysophospholipid transporter LplT 928954 8156704 ECBD_0889 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysophospholipid transporter LplT YP_003035141.1 927761 D 866768 CDS YP_003035142.1 253772311 8156705 complement(928986..930026) 1 NC_012947.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 930026 tas 8156705 tas Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldo-keto reductase YP_003035142.1 928986 R 866768 CDS YP_003035143.1 253772312 8156706 complement(930134..930352) 1 NC_012947.1 PFAM: protein of unknown function DUF903; KEGG: ssn:SSON_2990 hypothetical protein; hypothetical protein 930352 8156706 ECBD_0891 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035143.1 930134 R 866768 CDS YP_003035144.1 253772313 8156707 complement(930490..931203) 1 NC_012947.1 PFAM: integral membrane protein TerC; KEGG: sdy:SDY_3049 transporter; integral membrane protein TerC 931203 8156707 ECBD_0892 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integral membrane protein TerC YP_003035144.1 930490 R 866768 CDS YP_003035145.1 253772314 8156708 complement(931272..931961) 1 NC_012947.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 931961 8156708 ECBD_0893 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA mismatch repair protein YP_003035145.1 931272 R 866768 CDS YP_003035146.1 253772315 8156709 932147..932293 1 NC_012947.1 KEGG: elf:LF82_p452 hypothetical protein YgdT; hypothetical protein 932293 8156709 ECBD_0894 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035146.1 932147 D 866768 CDS YP_003035147.1 253772316 8156710 932646..933176 1 NC_012947.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 933176 8156710 ECBD_0895 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dinucleoside polyphosphate hydrolase YP_003035147.1 932646 D 866768 CDS YP_003035148.1 253772317 8156711 933189..935435 1 NC_012947.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 935435 8156711 ECBD_0896 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain YP_003035148.1 933189 D 866768 CDS YP_003035149.1 253772318 8156712 935586..936461 1 NC_012947.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 936461 8156712 ECBD_0897 Escherichia coli 'BL21-Gold(DE3)pLysS AG' prolipoprotein diacylglyceryl transferase YP_003035149.1 935586 D 866768 CDS YP_003035150.1 253772319 8156713 936468..937262 1 NC_012947.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 937262 thyA 8156713 thyA Escherichia coli 'BL21-Gold(DE3)pLysS AG' thymidylate synthase YP_003035150.1 936468 D 866768 CDS YP_003035151.1 253772320 8156714 937447..937917 1 NC_012947.1 KEGG: sdy:SDY_3043 hypothetical protein; hypothetical protein 937917 8156714 ECBD_0899 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035151.1 937447 D 866768 CDS YP_003035152.1 253772321 8156715 937908..938471 1 NC_012947.1 KEGG: ssn:SSON_2982 hypothetical protein; hypothetical protein 938471 8156715 ECBD_0900 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035152.1 937908 D 866768 CDS YP_003035153.1 253772322 8156716 938468..938875 1 NC_012947.1 KEGG: sbc:SbBS512_E3038 hypothetical protein; hypothetical protein 938875 8156716 ECBD_0901 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035153.1 938468 D 866768 CDS YP_003035154.1 253772323 8156717 938860..939183 1 NC_012947.1 KEGG: sbc:SbBS512_E3039 prepilin peptidase-dependent protein C; hypothetical protein 939183 8156717 ECBD_0902 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035154.1 938860 D 866768 CDS YP_003035155.1 253772324 8156718 939196..942564 1 NC_012947.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 942564 recC 8156718 recC Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease V subunit gamma YP_003035155.1 939196 D 866768 CDS YP_003035156.1 253772325 8156719 942740..945628 1 NC_012947.1 PFAM: peptidase M16 domain protein; KEGG: sfv:SFV_2899 protease III; peptidase M16 domain protein 945628 8156719 ECBD_0904 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase M16 domain protein YP_003035156.1 942740 D 866768 CDS YP_003035157.1 253772326 8156720 945621..949163 1 NC_012947.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 949163 recB 8156720 recB Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease V subunit beta YP_003035157.1 945621 D 866768 CDS YP_003035158.1 253772327 8156721 949163..950989 1 NC_012947.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 950989 recD 8156721 recD Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease V subunit alpha YP_003035158.1 949163 D 866768 CDS YP_003035159.1 253772328 8156722 complement(951051..952382) 1 NC_012947.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 952382 8156722 ECBD_0907 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylglutamate synthase YP_003035159.1 951051 R 866768 CDS YP_003035160.1 253772329 8156723 952614..953867 1 NC_012947.1 KEGG: sbc:SbBS512_E3045 N-acetylmuramoyl-L-alanine amidase AmiC; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 953867 8156723 ECBD_0908 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylmuramoyl-L-alanine amidase YP_003035160.1 952614 D 866768 CDS YP_003035161.1 253772330 8156727 954446..955543 1 NC_012947.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 955543 mltA 8156727 mltA Escherichia coli 'BL21-Gold(DE3)pLysS AG' murein transglycosylase A YP_003035161.1 954446 D 866768 CDS YP_003035162.1 253772331 8156728 955782..956588 1 NC_012947.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ssn:SSON_2969 enzyme; UBA/THIF-type NAD/FAD binding protein 956588 8156728 ECBD_0910 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UBA/THIF-type NAD/FAD binding protein YP_003035162.1 955782 D 866768 CDS YP_003035163.1 253772332 8156729 complement(956639..957082) 1 NC_012947.1 TIGRFAM: cysteine desulfurase, sulfur acceptor subunit CsdE; PFAM: Fe-S metabolism associated SufE; KEGG: ssn:SSON_2968 hypothetical protein; cysteine desulfurase, sulfur acceptor subunit CsdE 957082 8156729 ECBD_0911 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine desulfurase, sulfur acceptor subunit CsdE YP_003035163.1 956639 R 866768 CDS YP_003035164.1 253772333 8156730 complement(957082..958287) 1 NC_012947.1 PFAM: aminotransferase class V; KEGG: ssn:SSON_2967 cysteine sulfinate desulfinase; cysteine sulfinate desulfinase 958287 8156730 ECBD_0912 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine sulfinate desulfinase YP_003035164.1 957082 R 866768 CDS YP_003035165.1 253772334 8156731 958479..958706 1 NC_012947.1 PFAM: protein of unknown function DUF903; KEGG: ssn:SSON_2966 hypothetical protein; hypothetical protein 958706 8156731 ECBD_0913 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035165.1 958479 D 866768 CDS YP_003035166.1 253772335 8156732 959057..959974 1 NC_012947.1 glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; GcvA family transcriptional regulator 959974 8156732 ECBD_0914 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GcvA family transcriptional regulator YP_003035166.1 959057 D 866768 CDS YP_003035167.1 253772336 8156733 959993..960388 1 NC_012947.1 PFAM: protein of unknown function DUF423; KEGG: sdy:SDY_3025 hypothetical protein; hypothetical protein 960388 8156733 ECBD_0915 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035167.1 959993 D 866768 CDS YP_003035168.1 253772337 8156734 960381..961481 1 NC_012947.1 RNA 2'-O-ribose methyltransferase 961481 8156734 ECBD_0916 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA 2'-O-ribose methyltransferase YP_003035168.1 960381 D 866768 CDS YP_003035169.1 253772338 8156735 complement(961525..962256) 1 NC_012947.1 regulates expression of genes involved in L-fucose utilization; FucR family transcriptional regulator 962256 8156735 ECBD_0917 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FucR family transcriptional regulator YP_003035169.1 961525 R 866768 CDS YP_003035170.1 253772339 8156736 complement(962314..962736) 1 NC_012947.1 PFAM: RbsD or FucU transport; KEGG: sdy:SDY_3022 protein of fucose operon; RbsD or FucU transport 962736 8156736 ECBD_0918 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RbsD or FucU transport YP_003035170.1 962314 R 866768 CDS YP_003035171.1 253772340 8156737 complement(962738..964156) 1 NC_012947.1 PFAM: carbohydrate kinase FGGY; KEGG: ssn:SSON_2960 L-fuculokinase; L-fuculokinase 964156 8156737 ECBD_0919 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-fuculokinase YP_003035171.1 962738 R 866768 CDS YP_003035172.1 253772341 8156738 complement(964265..966040) 1 NC_012947.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 966040 fucI 8156738 fucI Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-fucose isomerase YP_003035172.1 964265 R 866768 CDS YP_003035173.1 253772342 8156739 966510..968009 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: atc:AGR_C_5112 ABC transporter protein, ATP binding component; ABC transporter 968009 8156739 ECBD_0921 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003035173.1 966510 D 866768 CDS YP_003035174.1 253772343 8156740 968013..968996 1 NC_012947.1 PFAM: inner-membrane translocator; KEGG: hap:HAPS_1726 ABC D-ribose transporter permease RbsC; inner-membrane translocator 968996 8156740 ECBD_0922 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner-membrane translocator YP_003035174.1 968013 D 866768 CDS YP_003035175.1 253772344 8156741 969070..970020 1 NC_012947.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bcj:BCAM2280 solute-binding component of ABC transporter; periplasmic binding protein/LacI transcriptional regulator 970020 8156741 ECBD_0923 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic binding protein/LacI transcriptional regulator YP_003035175.1 969070 D 866768 CDS YP_003035176.1 253772345 8156742 970073..971653 1 NC_012947.1 PFAM: carbohydrate kinase FGGY; KEGG: pmr:PMI2941 probable carbohydrate kinase; carbohydrate kinase FGGY 971653 8156742 ECBD_0924 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbohydrate kinase FGGY YP_003035176.1 970073 D 866768 CDS YP_003035177.1 253772346 8156743 971718..972716 1 NC_012947.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: pmr:PMI2934 LacI-family transcriptional regulator; LacI family transcriptional regulator 972716 8156743 ECBD_0925 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LacI family transcriptional regulator YP_003035177.1 971718 D 866768 CDS YP_003035178.1 253772347 8156745 973344..973619 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 973619 8156745 ECBD_0927 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003035178.1 973344 D 866768 CDS YP_003035179.1 253772348 8156746 973538..974041 1 NC_012947.1 PFAM: IS1 transposase; KEGG: dps:DP0860 insertion element IS1 1/5/6 protein (InsB); IS1 transposase 974041 8156746 ECBD_0928 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003035179.1 973538 D 866768 CDS YP_003035180.1 253772349 8156747 974301..975449 1 NC_012947.1 TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; L-1,2-propanediol oxidoreductase 975449 8156747 ECBD_0929 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-1,2-propanediol oxidoreductase YP_003035180.1 974301 D 866768 CDS YP_003035181.1 253772350 8156748 complement(975504..976349) 1 NC_012947.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 976349 xni 8156748 xni Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease IX YP_003035181.1 975504 R 866768 CDS YP_003035182.1 253772351 8156749 complement(976371..977738) 1 NC_012947.1 KEGG: ssn:SSON_2954 L-serine dehydratase; TIGRFAM: L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 977738 8156749 ECBD_0931 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-serine dehydratase YP_003035182.1 976371 R 866768 CDS YP_003035183.1 253772352 8156750 complement(977796..979085) 1 NC_012947.1 TIGRFAM: serine transporter; KEGG: ssn:SSON_2953 probable serine transporter; serine transporter 979085 8156750 ECBD_0932 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine transporter YP_003035183.1 977796 R 866768 CDS YP_003035184.1 253772353 8156751 complement(979427..979558) 1 NC_012947.1 hypothetical protein 979558 8156751 ECBD_0933 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035184.1 979427 R 866768 CDS YP_003035185.1 253772354 8156752 complement(979642..981006) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sbo:SBO_2676 hypothetical protein; hypothetical protein 981006 8156752 ECBD_0934 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035185.1 979642 R 866768 CDS YP_003035186.1 253772355 8156753 complement(981118..981966) 1 NC_012947.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 981966 queF 8156753 queF Escherichia coli 'BL21-Gold(DE3)pLysS AG' 7-cyano-7-deazaguanine reductase YP_003035186.1 981118 R 866768 CDS YP_003035187.1 253772356 8156754 982034..982579 1 NC_012947.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 982579 8156754 ECBD_0936 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SecY interacting protein Syd YP_003035187.1 982034 D 866768 CDS YP_003035188.1 253772357 8156755 983201..983530 1 NC_012947.1 PFAM: protein of unknown function DUF446; KEGG: ssn:SSON_2949 hypothetical protein; hypothetical protein 983530 8156755 ECBD_0937 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035188.1 983201 D 866768 CDS YP_003035189.1 253772358 8156756 983530..984312 1 NC_012947.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 984312 8156756 ECBD_0938 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA pseudouridine synthase C YP_003035189.1 983530 D 866768 CDS YP_003035190.1 253772359 8156757 984330..984779 1 NC_012947.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 984779 8156757 ECBD_0939 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flavodoxin YP_003035190.1 984330 D 866768 CDS YP_003035191.1 253772360 8156758 985214..986566 1 NC_012947.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 986566 8156758 ECBD_0940 Escherichia coli 'BL21-Gold(DE3)pLysS AG' d-galactonate transporter YP_003035191.1 985214 D 866768 CDS YP_003035192.1 253772361 8156759 986568..987908 1 NC_012947.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: ssn:SSON_2945 glucarate dehydratase; mandelate racemase/muconate lactonizing protein 987908 8156759 ECBD_0941 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mandelate racemase/muconate lactonizing protein YP_003035192.1 986568 D 866768 CDS YP_003035193.1 253772362 8156760 987929..989269 1 NC_012947.1 KEGG: sfx:S2994 glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: mandelate racemase/muconate lactonizing protein; glucarate dehydratase 989269 8156760 ECBD_0942 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucarate dehydratase YP_003035193.1 987929 D 866768 CDS YP_003035194.1 253772363 8156761 complement(989502..992258) 1 NC_012947.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 992258 8156761 ECBD_0943 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hybrid sensory histidine kinase BarA YP_003035194.1 989502 R 866768 CDS YP_003035195.1 253772364 8156762 992315..993616 1 NC_012947.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 993616 rumA 8156762 rumA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA 5-methyluridine methyltransferase YP_003035195.1 992315 D 866768 CDS YP_003035196.1 253772365 8156763 993664..995898 1 NC_012947.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 995898 relA 8156763 relA Escherichia coli 'BL21-Gold(DE3)pLysS AG' GDP/GTP pyrophosphokinase YP_003035196.1 993664 D 866768 CDS YP_003035197.1 253772366 8156764 995976..996224 1 NC_012947.1 part of the MazF-MazE toxin-antitoxin system; conteracts MazF; antitoxin MazE 996224 8156764 ECBD_0946 Escherichia coli 'BL21-Gold(DE3)pLysS AG' antitoxin MazE YP_003035197.1 995976 D 866768 CDS YP_003035198.1 253772367 8156765 996224..996559 1 NC_012947.1 MazF; endoribonuclease; toxin of the ChpA-ChpR toxin-antitoxin system; toxin ChpA 996559 8156765 ECBD_0947 Escherichia coli 'BL21-Gold(DE3)pLysS AG' toxin ChpA YP_003035198.1 996224 D 866768 CDS YP_003035199.1 253772368 8156766 996630..997421 1 NC_012947.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 997421 mazG 8156766 mazG Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside triphosphate pyrophosphohydrolase YP_003035199.1 996630 D 866768 CDS YP_003035200.1 253772369 8156767 997649..999286 1 NC_012947.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 999286 pyrG 8156767 pyrG Escherichia coli 'BL21-Gold(DE3)pLysS AG' CTP synthetase YP_003035200.1 997649 D 866768 CDS YP_003035201.1 253772370 8156768 999374..1000672 1 NC_012947.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1000672 eno 8156768 eno Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphopyruvate hydratase YP_003035201.1 999374 D 866768 CDS YP_003035202.1 253772371 8156769 complement(1000732..1001604) 1 NC_012947.1 PFAM: protein of unknown function DUF477; KEGG: sfv:SFV_2677 hypothetical protein; hypothetical protein 1001604 8156769 ECBD_0951 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035202.1 1000732 R 866768 CDS YP_003035203.1 253772372 8156770 complement(1001618..1001758) 1 NC_012947.1 hypothetical protein 1001758 8156770 ECBD_0952 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035203.1 1001618 R 866768 CDS YP_003035204.1 253772373 8156771 1001897..1002568 1 NC_012947.1 KEGG: sdy:SDY_2981 hypothetical protein; hypothetical protein 1002568 8156771 ECBD_0953 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035204.1 1001897 D 866768 CDS YP_003035205.1 253772374 8156772 complement(1004369..1005847) 1 NC_012947.1 PFAM: carbohydrate kinase FGGY; KEGG: sdy:SDY_2978 kinase; carbohydrate kinase FGGY 1005847 8156772 ECBD_0954 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbohydrate kinase FGGY YP_003035205.1 1004369 R 866768 CDS YP_003035206.1 253772375 8156773 complement(1005874..1007151) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2927 transporter; major facilitator superfamily MFS_1 1007151 8156773 ECBD_0955 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003035206.1 1005874 R 866768 CDS YP_003035207.1 253772376 8156774 1007470..1008255 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: elf:LF82_3153 uncharacterized oxidoreductase YgcW; short-chain dehydrogenase/reductase SDR 1008255 8156774 ECBD_0956 Escherichia coli 'BL21-Gold(DE3)pLysS AG' short-chain dehydrogenase/reductase SDR YP_003035207.1 1007470 D 866768 CDS YP_003035208.1 253772377 8156775 1008325..1009779 1 NC_012947.1 PFAM: FAD linked oxidase; Alkylglycerone-phosphate synthase 1009779 8156775 ECBD_0957 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Alkylglycerone-phosphate synthase YP_003035208.1 1008325 D 866768 CDS YP_003035209.1 253772378 8156776 1009801..1011210 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: ssn:SSON_2924 transporter; major facilitator superfamily MFS_1 1011210 8156776 ECBD_0958 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003035209.1 1009801 D 866768 CDS YP_003035210.1 253772379 8156777 1011188..1011967 1 NC_012947.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: ssn:SSON_2923 transporter; electron transfer flavoprotein alpha/beta-subunit 1011967 8156777 ECBD_0959 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transfer flavoprotein alpha/beta-subunit YP_003035210.1 1011188 D 866768 CDS YP_003035211.1 253772380 8156778 1011964..1012824 1 NC_012947.1 PFAM: electron transfer flavoprotein subunit alpha; KEGG: ssn:SSON_2922 flavoprotein; electron transfer flavoprotein subunit alpha 1012824 8156778 ECBD_0960 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transfer flavoprotein subunit alpha YP_003035211.1 1011964 D 866768 CDS YP_003035212.1 253772381 8156779 complement(1012972..1013547) 1 NC_012947.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: elf:LF82_3148 uncharacterized protein YgcP; glycerol-3-phosphate responsive antiterminator, GlpP 1013547 8156779 ECBD_0961 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate responsive antiterminator, GlpP YP_003035212.1 1012972 R 866768 CDS YP_003035213.1 253772382 8158993 complement(1013564..1013824) 1 NC_012947.1 KEGG: sdy:SDY_2969 hypothetical protein; hypothetical protein 1013824 8158993 ECBD_0962 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035213.1 1013564 R 866768 CDS YP_003035214.1 253772383 8156016 complement(1013815..1015086) 1 NC_012947.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; HI0933 family protein; KEGG: ssn:SSON_2919 hypothetical protein; FAD dependent oxidoreductase 1015086 8156016 ECBD_0963 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FAD dependent oxidoreductase YP_003035214.1 1013815 R 866768 CDS YP_003035215.1 253772384 8156017 complement(1015164..1015529) 1 NC_012947.1 TIGRFAM: 6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: ssn:SSON_2918 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl tetrahydropterin synthase 1015529 8156017 ECBD_0964 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 6-pyruvoyl tetrahydropterin synthase YP_003035215.1 1015164 R 866768 CDS YP_003035216.1 253772385 8156018 1015845..1017644 1 NC_012947.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 1017644 cysJ 8156018 cysJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfite reductase subunit alpha YP_003035216.1 1015845 D 866768 CDS YP_003035217.1 253772386 8156019 1017644..1019356 1 NC_012947.1 hemoprotein; NADPH dependent; with the subunit alpha (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 1019356 8156019 ECBD_0966 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfite reductase subunit beta YP_003035217.1 1017644 D 866768 CDS YP_003035218.1 253772387 8156020 1019430..1020164 1 NC_012947.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1020164 8156020 ECBD_0967 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoadenosine phosphosulfate reductase YP_003035218.1 1019430 D 866768 CDS YP_003035219.1 253772388 8156021 1020429..1020581 1 NC_012947.1 PFAM: Hok/gef cell toxic protein; KEGG: sbc:SbBS512_E3114 hok/gef family protein; Hok/gef cell toxic protein 1020581 8156021 ECBD_0968 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Hok/gef cell toxic protein YP_003035219.1 1020429 D 866768 CDS YP_003035220.1 253772389 8156022 complement(1020611..1020751) 1 NC_012947.1 hypothetical protein 1020751 8156022 ECBD_0969 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035220.1 1020611 R 866768 CDS YP_003035221.1 253772390 8156023 complement(1020774..1021886) 1 NC_012947.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 1021886 8156023 ECBD_0970 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003035221.1 1020774 R 866768 CDS YP_003035222.1 253772391 8156024 complement(1022318..1023355) 1 NC_012947.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 1023355 8156024 ECBD_0971 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alkaline phosphatase isozyme conversion aminopeptidase YP_003035222.1 1022318 R 866768 CDS YP_003035223.1 253772392 8156025 1023607..1024515 1 NC_012947.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1024515 8156025 ECBD_0972 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfate adenylyltransferase subunit 2 YP_003035223.1 1023607 D 866768 CDS YP_003035224.1 253772393 8156026 1024517..1025944 1 NC_012947.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 1025944 cysN 8156026 cysN Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfate adenylyltransferase subunit 1 YP_003035224.1 1024517 D 866768 CDS YP_003035225.1 253772394 8156027 1025944..1026549 1 NC_012947.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1026549 8156027 ECBD_0974 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenylylsulfate kinase YP_003035225.1 1025944 D 866768 CDS YP_003035226.1 253772395 8156028 1026599..1026922 1 NC_012947.1 KEGG: sdy:SDY_2948 hypothetical protein; hypothetical protein 1026922 8156028 ECBD_0975 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035226.1 1026599 D 866768 CDS YP_003035227.1 253772396 8156029 1027116..1027427 1 NC_012947.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 1027427 ftsB 8156029 ftsB Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsB YP_003035227.1 1027116 D 866768 CDS YP_003035228.1 253772397 8156030 1027446..1028156 1 NC_012947.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1028156 ispD 8156030 ispD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_003035228.1 1027446 D 866768 CDS YP_003035229.1 253772398 8156031 1028156..1028635 1 NC_012947.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1028635 ispF 8156031 ispF Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_003035229.1 1028156 D 866768 CDS YP_003035230.1 253772399 8156032 1028632..1029681 1 NC_012947.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1029681 truD 8156032 truD Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA pseudouridine synthase D YP_003035230.1 1028632 D 866768 CDS YP_003035231.1 253772400 8156033 1029662..1030423 1 NC_012947.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1030423 surE 8156033 surE Escherichia coli 'BL21-Gold(DE3)pLysS AG' stationary phase survival protein SurE YP_003035231.1 1029662 D 866768 CDS YP_003035232.1 253772401 8156034 1030417..1031043 1 NC_012947.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1031043 pcm 8156034 pcm Escherichia coli 'BL21-Gold(DE3)pLysS AG' protein-L-isoaspartate O-methyltransferase YP_003035232.1 1030417 D 866768 CDS YP_003035233.1 253772402 8156035 1031183..1032322 1 NC_012947.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 1032322 nlpD 8156035 nlpD Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein NlpD YP_003035233.1 1031183 D 866768 CDS YP_003035234.1 253772403 8156036 1032385..1033377 1 NC_012947.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 1033377 8156036 ECBD_0983 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA polymerase sigma factor RpoS YP_003035234.1 1032385 D 866768 CDS YP_003035235.1 253772404 8156037 complement(1033471..1034835) 1 NC_012947.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; inner membrane permease YgbN 1034835 8156037 ECBD_0984 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane permease YgbN YP_003035235.1 1033471 R 866768 CDS YP_003035236.1 253772405 8156038 complement(1034924..1035700) 1 NC_012947.1 PFAM: xylose isomerase; KEGG: sbc:SbBS512_E3135 AP endonuclease, family 2; hypothetical protein 1035700 8156038 ECBD_0985 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035236.1 1034924 R 866768 CDS YP_003035237.1 253772406 8156039 complement(1035705..1036343) 1 NC_012947.1 PFAM: class II aldolase/adducin family protein; KEGG: ssn:SSON_2886 aldolase; aldolase 1036343 8156039 ECBD_0986 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldolase YP_003035237.1 1035705 R 866768 CDS YP_003035238.1 253772407 8156040 complement(1036340..1037602) 1 NC_012947.1 PFAM: type III effector Hrp-dependent outers; KEGG: ssn:SSON_2885 hypothetical protein; Hrp-dependent type III effector protein 1037602 8156040 ECBD_0987 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Hrp-dependent type III effector protein YP_003035238.1 1036340 R 866768 CDS YP_003035239.1 253772408 8156041 complement(1037599..1038507) 1 NC_012947.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E3138 NAD binding domain of 6-phosphogluconate dehydrogenase; 2-hydroxy-3-oxopropionate reductase 1038507 8156041 ECBD_0988 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-hydroxy-3-oxopropionate reductase YP_003035239.1 1037599 R 866768 CDS YP_003035240.1 253772409 8156042 1038703..1039470 1 NC_012947.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: sbo:SBO_2785 DeoR-type transcriptional regulator; DeoR family transcriptional regulator 1039470 8156042 ECBD_0989 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DeoR family transcriptional regulator YP_003035240.1 1038703 D 866768 CDS YP_003035241.1 253772410 8156043 complement(1039521..1040177) 1 NC_012947.1 PFAM: metallophosphoesterase; KEGG: sbo:SBO_2786 serine/threonine-specific protein phosphatase 2; serine/threonine-specific protein phosphatase 2 1040177 8156043 ECBD_0990 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine/threonine-specific protein phosphatase 2 YP_003035241.1 1039521 R 866768 CDS YP_003035242.1 253772411 8156044 complement(1040283..1042844) 1 NC_012947.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1042844 8156044 ECBD_0991 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA mismatch repair protein MutS YP_003035242.1 1040283 R 866768 CDS YP_003035243.1 253772412 8156045 1042920..1043054 1 NC_012947.1 hypothetical protein 1043054 8156045 ECBD_0992 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035243.1 1042920 D 866768 CDS YP_003035244.1 253772413 8156046 1043131..1043484 1 NC_012947.1 KEGG: ssn:SSON_2879 hypothetical protein; hypothetical protein 1043484 8156046 ECBD_0993 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035244.1 1043131 D 866768 CDS YP_003035245.1 253772414 8156047 complement(1043521..1045599) 1 NC_012947.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; GAF domain protein; Fis family transcriptional regulator 1045599 8156047 ECBD_0994 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Fis family transcriptional regulator YP_003035245.1 1043521 R 866768 CDS YP_003035246.1 253772415 8156048 complement(1045673..1046683) 1 NC_012947.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: sbc:SbBS512_E3147 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 1046683 8156048 ECBD_0995 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase expression/formation protein HypE YP_003035246.1 1045673 R 866768 CDS YP_003035247.1 253772416 8156049 complement(1046680..1047801) 1 NC_012947.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: sbc:SbBS512_E3148 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 1047801 8156049 ECBD_0996 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase expression/formation protein HypD YP_003035247.1 1046680 R 866768 CDS YP_003035248.1 253772417 8156050 complement(1047801..1048073) 1 NC_012947.1 HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 1048073 8156050 ECBD_0997 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase assembly chaperone YP_003035248.1 1047801 R 866768 CDS YP_003035249.1 253772418 8156051 complement(1048064..1048936) 1 NC_012947.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 1048936 8156051 ECBD_0998 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase nickel incorporation protein HypB YP_003035249.1 1048064 R 866768 CDS YP_003035250.1 253772419 8156052 complement(1048940..1049290) 1 NC_012947.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 1049290 hypA 8156052 hypA Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase nickel incorporation protein YP_003035250.1 1048940 R 866768 CDS YP_003035251.1 253772420 8156053 1049502..1049963 1 NC_012947.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 1049963 8156053 ECBD_1000 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate hydrogenlyase regulatory protein HycA YP_003035251.1 1049502 D 866768 CDS YP_003035252.1 253772421 8156054 1050088..1050699 1 NC_012947.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2779 small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex); 4Fe-4S ferredoxin iron-sulfur binding domain protein 1050699 8156054 ECBD_1001 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003035252.1 1050088 D 866768 CDS YP_003035253.1 253772422 8156055 1050696..1052522 1 NC_012947.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 1052522 8156055 ECBD_1002 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate hydrogenlyase subunit 3 YP_003035253.1 1050696 D 866768 CDS YP_003035254.1 253772423 8156056 1052525..1053448 1 NC_012947.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: ssn:SSON_2869 membrane-spanning protein of hydrogenase 3 (part of FHL complex); respiratory-chain NADH dehydrogenase subunit 1 1053448 8156056 ECBD_1003 Escherichia coli 'BL21-Gold(DE3)pLysS AG' respiratory-chain NADH dehydrogenase subunit 1 YP_003035254.1 1052525 D 866768 CDS YP_003035255.1 253772424 8156057 1053466..1055175 1 NC_012947.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sbo:SBO_2797 large subunit of hydrogenase 3; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1055175 8156057 ECBD_1004 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_003035255.1 1053466 D 866768 CDS YP_003035256.1 253772425 8156058 1055185..1055727 1 NC_012947.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit 1055727 8156058 ECBD_1005 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate hydrogenlyase complex iron-sulfur subunit YP_003035256.1 1055185 D 866768 CDS YP_003035257.1 253772426 8156059 1055727..1056494 1 NC_012947.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: elf:LF82_1069 formate hydrogenlyase subunit 7; NADH ubiquinone oxidoreductase 20 kDa subunit 1056494 8156059 ECBD_1006 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH ubiquinone oxidoreductase 20 kDa subunit YP_003035257.1 1055727 D 866768 CDS YP_003035258.1 253772427 8156060 1056491..1056901 1 NC_012947.1 PFAM: formate hydrogenlyase maturation HycH; KEGG: sbc:SbBS512_E3158 formate hydrogenlyase maturation protein; formate hydrogenlyase maturation HycH 1056901 8156060 ECBD_1007 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate hydrogenlyase maturation HycH YP_003035258.1 1056491 D 866768 CDS YP_003035259.1 253772428 8156061 1056894..1057364 1 NC_012947.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 1057364 hycI 8156061 hycI Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 3 maturation protease YP_003035259.1 1056894 D 866768 CDS YP_003035260.1 253772429 8156062 complement(1057523..1058947) 1 NC_012947.1 PFAM: glycoside hydrolase family 1; KEGG: ssn:SSON_2860 cryptic 6-phospho-beta-glucosidase; cryptic 6-phospho-beta-glucosidase 1058947 8156062 ECBD_1009 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cryptic 6-phospho-beta-glucosidase YP_003035260.1 1057523 R 866768 CDS YP_003035261.1 253772430 8156063 complement(1058956..1060413) 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC 1060413 8156063 ECBD_1010 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC YP_003035261.1 1058956 R 866768 CDS YP_003035262.1 253772431 8156064 1060670..1061683 1 NC_012947.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ssn:SSON_2858 ascBF operon repressor; LacI family transcriptional regulator 1061683 8156064 ECBD_1011 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LacI family transcriptional regulator YP_003035262.1 1060670 D 866768 CDS YP_003035263.1 253772432 8156065 1061832..1062359 1 NC_012947.1 involved in electron transport from formate to hydrogen; electron transporter HydN 1062359 8156065 ECBD_1012 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transporter HydN YP_003035263.1 1061832 D 866768 CDS YP_003035264.1 253772433 8156066 1062512..1064764 1 NC_012947.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: ssn:SSON_2856 transcriptional regulatory protein; (NiFe) hydrogenase maturation protein HypF 1064764 8156066 ECBD_1013 Escherichia coli 'BL21-Gold(DE3)pLysS AG' (NiFe) hydrogenase maturation protein HypF YP_003035264.1 1062512 D 866768 CDS YP_003035265.1 253772434 8156067 complement(1064892..1066025) 1 NC_012947.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 1066025 8156067 ECBD_1014 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitric oxide reductase YP_003035265.1 1064892 R 866768 CDS YP_003035266.1 253772435 8156068 complement(1066022..1067461) 1 NC_012947.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 1067461 8156068 ECBD_1015 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic nitric oxide reductase flavorubredoxin YP_003035266.1 1066022 R 866768 CDS YP_003035267.1 253772436 8156069 1067648..1069162 1 NC_012947.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 1069162 8156069 ECBD_1016 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic nitric oxide reductase transcription regulator YP_003035267.1 1067648 D 866768 CDS YP_003035268.1 253772437 8156070 complement(1069159..1070124) 1 NC_012947.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 1070124 gutQ 8156070 gutQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-arabinose 5-phosphate isomerase YP_003035268.1 1069159 R 866768 CDS YP_003035269.1 253772438 8156071 complement(1070117..1070890) 1 NC_012947.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 1070890 srlR 8156071 srlR Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor SrlR YP_003035269.1 1070117 R 866768 CDS YP_003035270.1 253772439 8156072 complement(1070957..1071316) 1 NC_012947.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 1071316 8156072 ECBD_1019 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator GutM YP_003035270.1 1070957 R 866768 CDS YP_003035271.1 253772440 8156073 complement(1071422..1072201) 1 NC_012947.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 1072201 8156073 ECBD_1020 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sorbitol-6-phosphate dehydrogenase YP_003035271.1 1071422 R 866768 CDS YP_003035272.1 253772441 8156074 complement(1072205..1072576) 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 1072576 8156074 ECBD_1021 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system glucitol/sorbitol-specific transporter subunit IIA YP_003035272.1 1072205 R 866768 CDS YP_003035273.1 253772442 8156075 complement(1072587..1073546) 1 NC_012947.1 KEGG: sbc:SbBS512_E3174 PTS system, glucitol/sorbitol-specific, IIB component; TIGRFAM: PTS system, glucitol/sorbitol-specific, IIBC subunit; PFAM: Sorbitol phosphotransferase protein II domain protein; PTS system, glucitol/sorbitol-specific, IIBC subunit 1073546 8156075 ECBD_1022 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, glucitol/sorbitol-specific, IIBC subunit YP_003035273.1 1072587 R 866768 CDS YP_003035274.1 253772443 8156076 complement(1073543..1074106) 1 NC_012947.1 TIGRFAM: PTS system, glucitol/sorbitol-specific, IIC subunit; PFAM: PTS system protein II sorbitol-specific factor; KEGG: sdy:SDY_2898 PTS system, glucitol/sorbitol-specific IIC component; PTS system, glucitol/sorbitol-specific, IIC subunit 1074106 8156076 ECBD_1023 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, glucitol/sorbitol-specific, IIC subunit YP_003035274.1 1073543 R 866768 CDS YP_003035275.1 253772444 8156077 1074362..1075447 1 NC_012947.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 1075447 8156077 ECBD_1024 Escherichia coli 'BL21-Gold(DE3)pLysS AG' murein hydrolase B YP_003035275.1 1074362 D 866768 CDS YP_003035276.1 253772445 8156078 1075592..1076089 1 NC_012947.1 PFAM: damage inducible protein CinA; KEGG: ssn:SSON_2844 competence damage-inducible protein A; competence damage-inducible protein A 1076089 8156078 ECBD_1025 Escherichia coli 'BL21-Gold(DE3)pLysS AG' competence damage-inducible protein A YP_003035276.1 1075592 D 866768 CDS YP_003035277.1 253772446 8156079 1076169..1077230 1 NC_012947.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1077230 recA 8156079 recA Escherichia coli 'BL21-Gold(DE3)pLysS AG' recombinase A YP_003035277.1 1076169 D 866768 CDS YP_003035278.1 253772447 8156080 1077299..1077799 1 NC_012947.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1077799 recX 8156080 recX Escherichia coli 'BL21-Gold(DE3)pLysS AG' recombination regulator RecX YP_003035278.1 1077299 D 866768 CDS YP_003035279.1 253772448 8156081 1077927..1080557 1 NC_012947.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1080557 alaS 8156081 alaS Escherichia coli 'BL21-Gold(DE3)pLysS AG' alanyl-tRNA synthetase YP_003035279.1 1077927 D 866768 CDS YP_003035280.1 253772449 8156082 1080792..1080977 1 NC_012947.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1080977 8156082 ECBD_1029 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbon storage regulator YP_003035280.1 1080792 D 866768 CDS YP_003035281.1 253772450 8156088 1082435..1083001 1 NC_012947.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase 1083001 8156088 ECBD_1030 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-1-phosphatase YP_003035281.1 1082435 D 866768 CDS YP_003035282.1 253772451 8156089 1082998..1083426 1 NC_012947.1 KEGG: sfv:SFV_2815 hypothetical protein; hypothetical protein 1083426 8156089 ECBD_1031 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035282.1 1082998 D 866768 CDS YP_003035283.1 253772452 8156090 1083499..1085055 1 NC_012947.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1085055 8156090 ECBD_1032 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate--cysteine ligase YP_003035283.1 1083499 D 866768 CDS YP_003035284.1 253772453 8156091 1085205..1085720 1 NC_012947.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1085720 8156091 ECBD_1033 Escherichia coli 'BL21-Gold(DE3)pLysS AG' S-ribosylhomocysteinase YP_003035284.1 1085205 D 866768 CDS YP_003035285.1 253772454 8156092 complement(1085784..1087322) 1 NC_012947.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; drug resistance transporter EmrB/QacA subfamily 1087322 8156092 ECBD_1034 Escherichia coli 'BL21-Gold(DE3)pLysS AG' drug resistance transporter EmrB/QacA subfamily YP_003035285.1 1085784 R 866768 CDS YP_003035286.1 253772455 8156093 complement(1087339..1088511) 1 NC_012947.1 TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: ssn:SSON_2829 multidrug resistance secretion protein; efflux pump membrane protein 1088511 8156093 ECBD_1035 Escherichia coli 'BL21-Gold(DE3)pLysS AG' efflux pump membrane protein YP_003035286.1 1087339 R 866768 CDS YP_003035287.1 253772456 8156094 complement(1088638..1089168) 1 NC_012947.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 1089168 8156094 ECBD_1036 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional repressor MprA YP_003035287.1 1088638 R 866768 CDS YP_003035288.1 253772457 8156095 complement(1089259..1089594) 1 NC_012947.1 KEGG: sbc:SbBS512_E3193 hypothetical protein; hypothetical protein 1089594 8156095 ECBD_1037 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035288.1 1089259 R 866768 CDS YP_003035289.1 253772458 8156096 complement(1089584..1090321) 1 NC_012947.1 PFAM: AzlC family protein; KEGG: ssn:SSON_2826 hypothetical protein; AzlC family protein 1090321 8156096 ECBD_1038 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AzlC family protein YP_003035289.1 1089584 R 866768 CDS YP_003035290.1 253772459 8159482 complement(1090445..1091629) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_2836 permease; major facilitator superfamily MFS_1 1091629 8159482 ECBD_1039 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003035290.1 1090445 R 866768 CDS YP_003035291.1 253772460 8159483 complement(1091921..1092913) 1 NC_012947.1 with ProVW, part of the high-affinity transporter for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 1092913 proX 8159483 proX Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycine betaine transporter periplasmic subunit YP_003035291.1 1091921 R 866768 CDS YP_003035292.1 253772461 8159484 complement(1092971..1094035) 1 NC_012947.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 1094035 8159484 ECBD_1041 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycine betaine transporter membrane protein YP_003035292.1 1092971 R 866768 CDS YP_003035293.1 253772462 8159485 complement(1094028..1095230) 1 NC_012947.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 1095230 8159485 ECBD_1042 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycine betaine transporter ATP-binding subunit YP_003035293.1 1094028 R 866768 CDS YP_003035294.1 253772463 8159486 complement(1095584..1096543) 1 NC_012947.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1096543 nrdF 8159486 nrdF Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleotide-diphosphate reductase subunit beta YP_003035294.1 1095584 R 866768 CDS YP_003035295.1 253772464 8159487 complement(1096553..1098697) 1 NC_012947.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1098697 8159487 ECBD_1044 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleotide-diphosphate reductase subunit alpha YP_003035295.1 1096553 R 866768 CDS YP_003035296.1 253772465 8159488 complement(1098670..1099080) 1 NC_012947.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 1099080 nrdI 8159488 nrdI Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleotide reductase stimulatory protein YP_003035296.1 1098670 R 866768 CDS YP_003035297.1 253772466 8159489 complement(1099077..1099322) 1 NC_012947.1 TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: ssn:SSON_2818 glutaredoxin-like protein; glutaredoxin-like protein 1099322 8159489 ECBD_1046 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutaredoxin-like protein YP_003035297.1 1099077 R 866768 CDS YP_003035298.1 253772467 8159490 complement(1099570..1099899) 1 NC_012947.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_2863 hypothetical protein; hypothetical protein 1099899 8159490 ECBD_1047 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035298.1 1099570 R 866768 CDS YP_003035299.1 253772468 8159491 1100051..1100395 1 NC_012947.1 KEGG: sbc:SbBS512_E3210 hypothetical protein; hypothetical protein 1100395 8159491 ECBD_1048 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035299.1 1100051 D 866768 CDS YP_003035300.1 253772469 8159492 complement(1100432..1100881) 1 NC_012947.1 PFAM: protein of unknown function DUF1144; KEGG: sbc:SbBS512_E3211 hypothetical protein; hypothetical protein 1100881 8159492 ECBD_1049 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035300.1 1100432 R 866768 CDS YP_003035301.1 253772470 8159493 1101549..1101953 1 NC_012947.1 PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: sfx:S2883 DNA binding protein, nucleoid-associated; DNA binding protein, nucleoid-associated 1101953 8159493 ECBD_1050 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA binding protein, nucleoid-associated YP_003035301.1 1101549 D 866768 CDS YP_003035302.1 253772471 8159494 complement(1102000..1102524) 1 NC_012947.1 SMART: rhodanese; KEGG: sbc:SbBS512_E3213 inner membrane protein; rhodanese 1102524 8159494 ECBD_1051 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rhodanese YP_003035302.1 1102000 R 866768 CDS YP_003035303.1 253772472 8159495 complement(1102534..1102833) 1 NC_012947.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sbo:SBO_2852 hypothetical protein; ArsR family transcriptional regulator 1102833 8159495 ECBD_1052 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ArsR family transcriptional regulator YP_003035303.1 1102534 R 866768 CDS YP_003035304.1 253772473 8159496 1103016..1103174 1 NC_012947.1 PFAM: protein of unknown function UPF0057; KEGG: sdy:SDY_2856 hypothetical protein; hypothetical protein 1103174 8159496 ECBD_1053 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035304.1 1103016 D 866768 CDS YP_003035305.1 253772474 8159497 1103258..1103707 1 NC_012947.1 PFAM: peptidoglycan-binding LysM; transport-associated; SMART: peptidoglycan-binding LysM; transport-associated and nodulation region; KEGG: ssn:SSON_2809 hypothetical protein; LysM domain/BON superfamily protein 1103707 8159497 ECBD_1054 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysM domain/BON superfamily protein YP_003035305.1 1103258 D 866768 CDS YP_003035306.1 253772475 8159498 complement(1103708..1104370) 1 NC_012947.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 1104370 8159498 ECBD_1055 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator CsiR YP_003035306.1 1103708 R 866768 CDS YP_003035307.1 253772476 8159499 complement(1104391..1105791) 1 NC_012947.1 TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2853 gamma-aminobutyrate transporter; gamma-aminobutyrate transporter 1105791 8159499 ECBD_1056 Escherichia coli 'BL21-Gold(DE3)pLysS AG' gamma-aminobutyrate transporter YP_003035307.1 1104391 R 866768 CDS YP_003035308.1 253772477 8159500 complement(1106102..1107382) 1 NC_012947.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1107382 8159500 ECBD_1057 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-aminobutyrate aminotransferase YP_003035308.1 1106102 R 866768 CDS YP_003035309.1 253772478 8159501 complement(1107396..1108844) 1 NC_012947.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 1108844 gabD 8159501 gabD Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinate-semialdehyde dehydrogenase I YP_003035309.1 1107396 R 866768 CDS YP_003035310.1 253772479 8159502 complement(1108867..1110135) 1 NC_012947.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 1110135 8159502 ECBD_1059 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydroxyglutarate oxidase YP_003035310.1 1108867 R 866768 CDS YP_003035311.1 253772480 8159503 complement(1110154..1111131) 1 NC_012947.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 1111131 8159503 ECBD_1060 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035311.1 1110154 R 866768 CDS YP_003035312.1 253772481 8159504 complement(1111437..1111940) 1 NC_012947.1 PFAM: IS1 transposase; IS1 transposase 1111940 8159504 ECBD_1061 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003035312.1 1111437 R 866768 CDS YP_003035313.1 253772482 8159505 complement(1111859..1112134) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 1112134 8159505 ECBD_1062 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003035313.1 1111859 R 866768 CDS YP_003035314.1 253772483 8159506 complement(1112533..1113429) 1 NC_012947.1 PFAM: RepB plasmid partition; SMART: ParB domain protein nuclease; KEGG: ent:Ent638_2890 RepB plasmid partition; RepB plasmid partition 1113429 8159506 ECBD_1063 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RepB plasmid partition YP_003035314.1 1112533 R 866768 CDS YP_003035315.1 253772484 8159507 complement(1113426..1114322) 1 NC_012947.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: ent:Ent638_2889 nuclease; ParB domain protein nuclease 1114322 8159507 ECBD_1064 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ParB domain protein nuclease YP_003035315.1 1113426 R 866768 CDS YP_003035316.1 253772485 8159508 complement(1114312..1115868) 1 NC_012947.1 PFAM: Recombinase; Resolvase domain; KEGG: ent:Ent638_2888 recombinase; Recombinase 1115868 8159508 ECBD_1065 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Recombinase YP_003035316.1 1114312 R 866768 CDS YP_003035317.1 253772486 8159509 complement(1116151..1117380) 1 NC_012947.1 PFAM: integrase; KEGG: cko:CKO_03944 hypothetical protein; integrase 1117380 8159509 ECBD_1066 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integrase YP_003035317.1 1116151 R 866768 CDS YP_003035318.1 253772487 8159511 complement(1118124..1118606) 1 NC_012947.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1118606 smpB 8159511 smpB Escherichia coli 'BL21-Gold(DE3)pLysS AG' SsrA-binding protein YP_003035318.1 1118124 R 866768 CDS YP_003035319.1 253772488 8159512 1118738..1119214 1 NC_012947.1 PFAM: cyclase/dehydrase; KEGG: efe:EFER_0454 hypothetical protein; hypothetical protein 1119214 8159512 ECBD_1068 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035319.1 1118738 D 866768 CDS YP_003035320.1 253772489 8159513 1119204..1119494 1 NC_012947.1 PFAM: protein of unknown function UPF0125; KEGG: sbc:SbBS512_E3007 RnfH family protein; hypothetical protein 1119494 8159513 ECBD_1069 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035320.1 1119204 D 866768 CDS YP_003035321.1 253772490 8159514 complement(1119556..1119897) 1 NC_012947.1 PFAM: SmpA/OmlA domain protein; KEGG: sdy:SDY_2790 hypothetical protein; hypothetical protein 1119897 8159514 ECBD_1070 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035321.1 1119556 R 866768 CDS YP_003035322.1 253772491 8159515 complement(1120046..1121707) 1 NC_012947.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: ssn:SSON_2772 recombination and repair protein; recombination and repair protein 1121707 8159515 ECBD_1071 Escherichia coli 'BL21-Gold(DE3)pLysS AG' recombination and repair protein YP_003035322.1 1120046 R 866768 CDS YP_003035323.1 253772492 8159516 complement(1121793..1122671) 1 NC_012947.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1122671 ppnK 8159516 ppnK Escherichia coli 'BL21-Gold(DE3)pLysS AG' inorganic polyphosphate/ATP-NAD kinase YP_003035323.1 1121793 R 866768 CDS YP_003035324.1 253772493 8159517 1122794..1123387 1 NC_012947.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1123387 8159517 ECBD_1073 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat shock protein GrpE YP_003035324.1 1122794 D 866768 CDS YP_003035325.1 253772494 8159518 complement(1123442..1124704) 1 NC_012947.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: sbc:SbBS512_E3001 CBS/transporter associated domain protein; hypothetical protein 1124704 8159518 ECBD_1074 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035325.1 1123442 R 866768 CDS YP_003035326.1 253772495 8159519 complement(1124749..1125615) 1 NC_012947.1 PFAM: cytochrome C assembly protein; KEGG: sdy:SDY_2785 hypothetical protein; cytochrome C assembly protein 1125615 8159519 ECBD_1075 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C assembly protein YP_003035326.1 1124749 R 866768 CDS YP_003035327.1 253772496 8159520 1125707..1127068 1 NC_012947.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1127068 8159520 ECBD_1076 Escherichia coli 'BL21-Gold(DE3)pLysS AG' signal recognition particle protein YP_003035327.1 1125707 D 866768 CDS YP_003035328.1 253772497 8159521 1127205..1127453 1 NC_012947.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1127453 rpsP 8159521 rpsP Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S16 YP_003035328.1 1127205 D 866768 CDS YP_003035329.1 253772498 8159522 1127472..1128020 1 NC_012947.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1128020 rimM 8159522 rimM Escherichia coli 'BL21-Gold(DE3)pLysS AG' 16S rRNA-processing protein RimM YP_003035329.1 1127472 D 866768 CDS YP_003035330.1 253772499 8159523 1128051..1128818 1 NC_012947.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1128818 trmD 8159523 trmD Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA (guanine-N(1)-)-methyltransferase YP_003035330.1 1128051 D 866768 CDS YP_003035331.1 253772500 8159524 1128860..1129207 1 NC_012947.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1129207 rplS 8159524 rplS Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L19 YP_003035331.1 1128860 D 866768 CDS YP_003035332.1 253772501 8159525 complement(1129283..1129765) 1 NC_012947.1 PFAM: OmpA/MotB domain protein; KEGG: ssn:SSON_2762 predicted outer membrane lipoprotein; outer membrane lipoprotein 1129765 8159525 ECBD_1081 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein YP_003035332.1 1129283 R 866768 CDS YP_003035333.1 253772502 8159526 complement(1129781..1131004) 1 NC_012947.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; hypothetical protein 1131004 8159526 ECBD_1082 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035333.1 1129781 R 866768 CDS YP_003035334.1 253772503 8159527 complement(1130997..1131515) 1 NC_012947.1 KEGG: ssn:SSON_2755 hypothetical protein; hypothetical protein 1131515 8159527 ECBD_1083 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035334.1 1130997 R 866768 CDS YP_003035335.1 253772504 8159528 complement(1131665..1132030) 1 NC_012947.1 hypothetical protein 1132030 8159528 ECBD_1084 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035335.1 1131665 R 866768 CDS YP_003035336.1 253772505 8159529 1132240..1133310 1 NC_012947.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1133310 8159529 ECBD_1085 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phospho-2-dehydro-3-deoxyheptonate aldolase YP_003035336.1 1132240 D 866768 CDS YP_003035337.1 253772506 8159530 1133321..1134442 1 NC_012947.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1134442 tyrA 8159530 tyrA Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional chorismate mutase/prephenate dehydrogenase YP_003035337.1 1133321 D 866768 CDS YP_003035338.1 253772507 8159531 complement(1134485..1135645) 1 NC_012947.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 1135645 pheA 8159531 pheA Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional chorismate mutase/prephenate dehydratase YP_003035338.1 1134485 R 866768 CDS YP_003035339.1 253772508 8159532 complement(1135894..1136235) 1 NC_012947.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 1136235 8159532 ECBD_1088 Escherichia coli 'BL21-Gold(DE3)pLysS AG' translation inhibitor protein RaiA YP_003035339.1 1135894 R 866768 CDS YP_003035340.1 253772509 8159533 complement(1136506..1137243) 1 NC_012947.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 1137243 8159533 ECBD_1089 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane protein assembly complex subunit YfiO YP_003035340.1 1136506 R 866768 CDS YP_003035341.1 253772510 8159534 1137378..1138358 1 NC_012947.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 1138358 rluD 8159534 rluD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA pseudouridine synthase D YP_003035341.1 1137378 D 866768 CDS YP_003035342.1 253772511 8159535 1138355..1139086 1 NC_012947.1 PFAM: protein of unknown function DUF152; KEGG: sdy:SDY_2836 hypothetical protein; hypothetical protein 1139086 8159535 ECBD_1091 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035342.1 1138355 D 866768 CDS YP_003035343.1 253772512 8159536 1139216..1141789 1 NC_012947.1 KEGG: sbo:SBO_2627 protein disaggregation chaperone; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; protein disaggregation chaperone 1141789 8159536 ECBD_1092 Escherichia coli 'BL21-Gold(DE3)pLysS AG' protein disaggregation chaperone YP_003035343.1 1139216 D 866768 CDS YP_003035344.1 253772513 8159541 1147558..1148856 1 NC_012947.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_2830 alpha-ketoglutarate transporter; alpha-ketoglutarate transporter 1148856 8159541 ECBD_1093 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha-ketoglutarate transporter YP_003035344.1 1147558 D 866768 CDS YP_003035345.1 253772514 8159542 complement(1148853..1149197) 1 NC_012947.1 KEGG: sbc:SbBS512_E2949 lipoprotein; hypothetical protein 1149197 8159542 ECBD_1094 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035345.1 1148853 R 866768 CDS YP_003035346.1 253772515 8159543 complement(1149222..1150577) 1 NC_012947.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 1150577 pssA 8159543 pssA Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphatidylserine synthase YP_003035346.1 1149222 R 866768 CDS YP_003035347.1 253772516 8159544 complement(1150691..1153351) 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: sfx:S2819 hypothetical protein; GCN5-related N-acetyltransferase 1153351 8159544 ECBD_1096 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GCN5-related N-acetyltransferase YP_003035347.1 1150691 R 866768 CDS YP_003035348.1 253772517 8159545 complement(1153383..1154081) 1 NC_012947.1 PFAM: DTW domain containing protein; KEGG: sdy:SDY_2826 hypothetical protein; DTW domain containing protein 1154081 8159545 ECBD_1097 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DTW domain containing protein YP_003035348.1 1153383 R 866768 CDS YP_003035349.1 253772518 8159546 complement(1154150..1154569) 1 NC_012947.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: ssn:SSON_2708 thioredoxin 2; thioredoxin 2 1154569 8159546 ECBD_1098 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thioredoxin 2 YP_003035349.1 1154150 R 866768 CDS YP_003035350.1 253772519 8159547 1154776..1155813 1 NC_012947.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sdy:SDY_2824 predicted methyltransferase; methyltransferase 1155813 8159547 ECBD_1099 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase YP_003035350.1 1154776 D 866768 CDS YP_003035351.1 253772520 8159548 complement(1155861..1156550) 1 NC_012947.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1156550 8159548 ECBD_1100 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uracil-DNA glycosylase YP_003035351.1 1155861 R 866768 CDS YP_003035352.1 253772521 8159549 1156855..1157238 1 NC_012947.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 1157238 8159549 ECBD_1101 Escherichia coli 'BL21-Gold(DE3)pLysS AG' autonomous glycyl radical cofactor GrcA YP_003035352.1 1156855 D 866768 CDS YP_003035353.1 253772522 8159550 complement(1157294..1157881) 1 NC_012947.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: sbc:SbBS512_E2958 translocator protein, LysE family; neutral amino-acid efflux protein 1157881 8159550 ECBD_1102 Escherichia coli 'BL21-Gold(DE3)pLysS AG' neutral amino-acid efflux protein YP_003035353.1 1157294 R 866768 CDS YP_003035354.1 253772523 8159551 1157984..1158865 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_2703 transcriptional regulator LysR-type; LysR family transcriptional regulator 1158865 8159551 ECBD_1103 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003035354.1 1157984 D 866768 CDS YP_003035355.1 253772524 8159552 complement(1159074..1160408) 1 NC_012947.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 1160408 8159552 ECBD_1104 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent RNA helicase SrmB YP_003035355.1 1159074 R 866768 CDS YP_003035356.1 253772525 8159553 1160540..1161277 1 NC_012947.1 PFAM: methyltransferase small; KEGG: sfv:SFV_2638 enzyme; methyltransferase small 1161277 8159553 ECBD_1105 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase small YP_003035356.1 1160540 D 866768 CDS YP_003035357.1 253772526 8159554 complement(1161262..1162884) 1 NC_012947.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1162884 8159554 ECBD_1106 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-aspartate oxidase YP_003035357.1 1161262 R 866768 CDS YP_003035358.1 253772527 8159555 1163140..1163295 1 NC_012947.1 hypothetical protein 1163295 8159555 ECBD_1107 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035358.1 1163140 D 866768 CDS YP_003035359.1 253772528 8159556 1163292..1163867 1 NC_012947.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1163867 8159556 ECBD_1108 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA polymerase sigma factor RpoE YP_003035359.1 1163292 D 866768 CDS YP_003035360.1 253772529 8159557 1163900..1164550 1 NC_012947.1 PFAM: anti sigma-E protein RseA family protein; anti sigma-E protein RseA domain protein; KEGG: efe:EFER_0502 anti-sigma factor; anti-RNA polymerase sigma factor SigE 1164550 8159557 ECBD_1109 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anti-RNA polymerase sigma factor SigE YP_003035360.1 1163900 D 866768 CDS YP_003035361.1 253772530 8159558 1164550..1165506 1 NC_012947.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 1165506 rseB 8159558 rseB Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic negative regulator of sigmaE YP_003035361.1 1164550 D 866768 CDS YP_003035362.1 253772531 8159559 1165503..1165982 1 NC_012947.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 1165982 8159559 ECBD_1111 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SoxR reducing system protein RseC YP_003035362.1 1165503 D 866768 CDS YP_003035363.1 253772532 8159560 1166180..1167979 1 NC_012947.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1167979 8159560 ECBD_1112 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTP-binding protein LepA YP_003035363.1 1166180 D 866768 CDS YP_003035364.1 253772533 8159561 1167995..1168969 1 NC_012947.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 1168969 8159561 ECBD_1113 Escherichia coli 'BL21-Gold(DE3)pLysS AG' signal peptidase I YP_003035364.1 1167995 D 866768 CDS YP_003035365.1 253772534 8159562 1169242..1169922 1 NC_012947.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1169922 rnc 8159562 rnc Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease III YP_003035365.1 1169242 D 866768 CDS YP_003035366.1 253772535 8159563 1169919..1170824 1 NC_012947.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1170824 era 8159563 era Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTP-binding protein Era YP_003035366.1 1169919 D 866768 CDS YP_003035367.1 253772536 8158994 1170836..1171564 1 NC_012947.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1171564 recO 8158994 recO Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA repair protein RecO YP_003035367.1 1170836 D 866768 CDS YP_003035368.1 253772537 8156780 1171576..1172307 1 NC_012947.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1172307 8156780 ECBD_1117 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyridoxine 5'-phosphate synthase YP_003035368.1 1171576 D 866768 CDS YP_003035369.1 253772538 8156781 1172307..1172687 1 NC_012947.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1172687 acpS 8156781 acpS Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4'-phosphopantetheinyl transferase YP_003035369.1 1172307 D 866768 CDS YP_003035370.1 253772539 8156782 1172947..1173111 1 NC_012947.1 KEGG: efe:EFER_0512 hypothetical protein; hypothetical protein 1173111 8156782 ECBD_1119 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035370.1 1172947 D 866768 CDS YP_003035371.1 253772540 8156783 complement(1173382..1173642) 1 NC_012947.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2927 4Fe-4S binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein 1173642 8156783 ECBD_1120 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003035371.1 1173382 R 866768 CDS YP_003035372.1 253772541 8156784 complement(1173698..1174546) 1 NC_012947.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ssn:SSON_2644 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 1174546 8156784 ECBD_1121 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003035372.1 1173698 R 866768 CDS YP_003035373.1 253772542 8156785 1174755..1175390 1 NC_012947.1 TIGRFAM: HAD superfamily (subfamily IF) hydrolase, YfhB; KEGG: sbc:SbBS512_E2925 HAD hydrolase YhfB; hypothetical protein 1175390 8156785 ECBD_1122 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035373.1 1174755 D 866768 CDS YP_003035374.1 253772543 8156786 1175448..1175951 1 NC_012947.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sbc:SbBS512_E2923 tRNA-specific adenosine deaminase; tRNA-specific adenosine deaminase 1175951 8156786 ECBD_1123 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA-specific adenosine deaminase YP_003035374.1 1175448 D 866768 CDS YP_003035375.1 253772544 8156787 complement(1176017..1176520) 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 1176520 8156787 ECBD_1124 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003035375.1 1176017 R 866768 CDS YP_003035376.1 253772545 8156788 complement(1176439..1176714) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 1176714 8156788 ECBD_1125 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003035376.1 1176439 R 866768 CDS YP_003035377.1 253772546 8156789 complement(1176748..1178280) 1 NC_012947.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 1178280 8156789 ECBD_1126 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transglycosylase YP_003035377.1 1176748 R 866768 CDS YP_003035378.1 253772547 8156790 1178538..1182425 1 NC_012947.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1182425 8156790 ECBD_1127 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribosylformylglycinamidine synthase YP_003035378.1 1178538 D 866768 CDS YP_003035379.1 253772548 8156791 1183001..1184428 1 NC_012947.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_2746 2-component sensor protein; histidine kinase 1184428 8156791 ECBD_1128 Escherichia coli 'BL21-Gold(DE3)pLysS AG' histidine kinase YP_003035379.1 1183001 D 866768 CDS YP_003035380.1 253772549 8156792 1184593..1185306 1 NC_012947.1 KEGG: sfv:SFV_2603 hypothetical protein; hypothetical protein 1185306 8156792 ECBD_1129 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035380.1 1184593 D 866768 CDS YP_003035381.1 253772550 8156793 1185296..1186630 1 NC_012947.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: sbc:SbBS512_E2919 sigma-54 dependent response regulator; two component, sigma54 specific, Fis family transcriptional regulator 1186630 8156793 ECBD_1130 Escherichia coli 'BL21-Gold(DE3)pLysS AG' two component, sigma54 specific, Fis family transcriptional regulator YP_003035381.1 1185296 D 866768 CDS YP_003035382.1 253772551 8156794 1186691..1187029 1 NC_012947.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 1187029 8156794 ECBD_1131 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrogen regulatory protein P-II 1 YP_003035382.1 1186691 D 866768 CDS YP_003035383.1 253772552 8156795 complement(1187074..1188264) 1 NC_012947.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 1188264 8156795 ECBD_1132 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitric oxide dioxygenase YP_003035383.1 1187074 R 866768 CDS YP_003035384.1 253772553 8156796 1188592..1189845 1 NC_012947.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1189845 glyA 8156796 glyA Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine hydroxymethyltransferase YP_003035384.1 1188592 D 866768 CDS YP_003035385.1 253772554 8156797 complement(1190043..1191236) 1 NC_012947.1 PFAM: ROK family protein; KEGG: sbo:SBO_2578 NAGC-like transcriptional regulator; ROK family protein 1191236 8156797 ECBD_1134 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ROK family protein YP_003035385.1 1190043 R 866768 CDS YP_003035386.1 253772555 8156798 1191354..1194635 1 NC_012947.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: sbo:SBO_2577 hypothetical protein; hypothetical protein 1194635 8156798 ECBD_1135 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035386.1 1191354 D 866768 CDS YP_003035387.1 253772556 8156799 1194732..1195715 1 NC_012947.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sfv:SFV_2596 LacI-type transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1195715 8156799 ECBD_1136 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic binding protein/LacI transcriptional regulator YP_003035387.1 1194732 D 866768 CDS YP_003035388.1 253772557 8156800 1195738..1197249 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sbo:SBO_2573 ATP-binding component of a transporter; ABC transporter 1197249 8156800 ECBD_1137 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003035388.1 1195738 D 866768 CDS YP_003035389.1 253772558 8156801 1197274..1198272 1 NC_012947.1 PFAM: inner-membrane translocator; KEGG: ssn:SSON_2629 transporter permease; inner-membrane translocator 1198272 8156801 ECBD_1138 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner-membrane translocator YP_003035389.1 1197274 D 866768 CDS YP_003035390.1 253772559 8156802 1198338..1199399 1 NC_012947.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_2628 oxidoreductase; alcohol dehydrogenase zinc-binding domain protein 1199399 8156802 ECBD_1139 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase zinc-binding domain protein YP_003035390.1 1198338 D 866768 CDS YP_003035391.1 253772560 8156803 1199411..1200283 1 NC_012947.1 PFAM: aldose 1-epimerase; KEGG: ssn:SSON_2627 hypothetical protein; aldose 1-epimerase 1200283 8156803 ECBD_1140 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldose 1-epimerase YP_003035391.1 1199411 D 866768 CDS YP_003035392.1 253772561 8156804 complement(1200331..1200753) 1 NC_012947.1 PFAM: DoxX family protein; KEGG: sfx:S2762 hypothetical protein; DoxX family protein 1200753 8156804 ECBD_1141 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DoxX family protein YP_003035392.1 1200331 R 866768 CDS YP_003035393.1 253772562 8156805 complement(1200850..1202052) 1 NC_012947.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ssn:SSON_2624 phenylpropionate dioxygenase, ferredoxin reductase subunit; phenylpropionate dioxygenase ferredoxin reductase subunit 1202052 8156805 ECBD_1142 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phenylpropionate dioxygenase ferredoxin reductase subunit YP_003035393.1 1200850 R 866768 CDS YP_003035394.1 253772563 8156806 complement(1202062..1202874) 1 NC_012947.1 Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 1202874 8156806 ECBD_1143 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase YP_003035394.1 1202062 R 866768 CDS YP_003035395.1 253772564 8156807 complement(1202871..1203191) 1 NC_012947.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: ssn:SSON_2622 3-phenylpropionate dioxygenase ferredoxin subunit; 3-phenylpropionate dioxygenase ferredoxin subunit 1203191 8156807 ECBD_1144 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-phenylpropionate dioxygenase ferredoxin subunit YP_003035395.1 1202871 R 866768 CDS YP_003035396.1 253772565 8156808 complement(1203191..1203709) 1 NC_012947.1 PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: sfx:S2758 3-phenylpropionate dioxygenase subunit beta; 3-phenylpropionate dioxygenase subunit beta 1203709 8156808 ECBD_1145 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-phenylpropionate dioxygenase subunit beta YP_003035396.1 1203191 R 866768 CDS YP_003035397.1 253772566 8156809 complement(1203706..1205067) 1 NC_012947.1 PFAM: Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; Rieske [2Fe-2S] domain protein; KEGG: ssn:SSON_2620 large terminal subunit of phenylpropionate dioxygenase; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein 1205067 8156809 ECBD_1146 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein YP_003035397.1 1203706 R 866768 CDS YP_003035398.1 253772567 8156810 1205203..1206093 1 NC_012947.1 activator of 3-phenylpropionic acid catabolism; DNA-binding transcriptional regulator HcaR 1206093 8156810 ECBD_1147 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator HcaR YP_003035398.1 1205203 D 866768 CDS YP_003035399.1 253772568 8156811 1206253..1207392 1 NC_012947.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 1207392 8156811 ECBD_1148 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-phenylpropionic acid transporter YP_003035399.1 1206253 D 866768 CDS YP_003035400.1 253772569 8156812 complement(1207384..1208664) 1 NC_012947.1 PFAM: PRD domain protein; KEGG: sbo:SBO_2559 stationary phase inducible protein CsiE; stationary phase inducible protein CsiE 1208664 8156812 ECBD_1149 Escherichia coli 'BL21-Gold(DE3)pLysS AG' stationary phase inducible protein CsiE YP_003035400.1 1207384 R 866768 CDS YP_003035401.1 253772570 8156813 complement(1208855..1209709) 1 NC_012947.1 KEGG: sdy:SDY_2730 enzyme; enzyme 1209709 8156813 ECBD_1150 Escherichia coli 'BL21-Gold(DE3)pLysS AG' enzyme YP_003035401.1 1208855 R 866768 CDS YP_003035402.1 253772571 8156814 complement(1209854..1210657) 1 NC_012947.1 PFAM: inositol monophosphatase; KEGG: sbo:SBO_2557 inositol monophosphatase; inositol monophosphatase 1210657 8156814 ECBD_1151 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inositol monophosphatase YP_003035402.1 1209854 R 866768 CDS YP_003035403.1 253772572 8156815 1210776..1211516 1 NC_012947.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sfv:SFV_2580 ATP synthase subunit beta; RNA methyltransferase, TrmH family, group 1 1211516 8156815 ECBD_1152 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA methyltransferase, TrmH family, group 1 YP_003035403.1 1210776 D 866768 CDS YP_003035404.1 253772573 8156816 1211968..1212456 1 NC_012947.1 regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 1212456 8156816 ECBD_1153 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator IscR YP_003035404.1 1211968 D 866768 CDS YP_003035405.1 253772574 8156817 1212568..1213782 1 NC_012947.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1213782 8156817 ECBD_1154 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine desulfurase YP_003035405.1 1212568 D 866768 CDS YP_003035406.1 253772575 8156818 1213810..1214196 1 NC_012947.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: ssn:SSON_2611 scaffold protein; scaffold protein 1214196 8156818 ECBD_1155 Escherichia coli 'BL21-Gold(DE3)pLysS AG' scaffold protein YP_003035406.1 1213810 D 866768 CDS YP_003035407.1 253772576 8156819 1214213..1214536 1 NC_012947.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 1214536 iscA 8156819 iscA Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-sulfur cluster assembly protein YP_003035407.1 1214213 D 866768 CDS YP_003035408.1 253772577 8156820 1214632..1215147 1 NC_012947.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1215147 hscB 8156820 hscB Escherichia coli 'BL21-Gold(DE3)pLysS AG' co-chaperone HscB YP_003035408.1 1214632 D 866768 CDS YP_003035409.1 253772578 8156821 1215164..1217014 1 NC_012947.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1217014 hscA 8156821 hscA Escherichia coli 'BL21-Gold(DE3)pLysS AG' chaperone protein HscA YP_003035409.1 1215164 D 866768 CDS YP_003035410.1 253772579 8156822 1217016..1217351 1 NC_012947.1 TIGRFAM: ferredoxin 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: sbc:SbBS512_E2900 ferredoxin 2Fe-2S type, ISC system; ferredoxin 2Fe-2S type, ISC system 1217351 8156822 ECBD_1159 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferredoxin 2Fe-2S type, ISC system YP_003035410.1 1217016 D 866768 CDS YP_003035411.1 253772580 8156823 1217363..1217563 1 NC_012947.1 TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: sdy:SDY_2720 hypothetical protein; hypothetical protein 1217563 8156823 ECBD_1160 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035411.1 1217363 D 866768 CDS YP_003035412.1 253772581 8156824 1217621..1218904 1 NC_012947.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 1218904 8156824 ECBD_1161 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminopeptidase B YP_003035412.1 1217621 D 866768 CDS YP_003035413.1 253772582 8156825 1219046..1219822 1 NC_012947.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 1219822 8156825 ECBD_1162 Escherichia coli 'BL21-Gold(DE3)pLysS AG' enhanced serine sensitivity protein SseB YP_003035413.1 1219046 D 866768 CDS YP_003035414.1 253772583 8156826 complement(1220644..1221483) 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: bcj:BCAS0612 integrase; Integrase catalytic region 1221483 8156826 ECBD_1163 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003035414.1 1220644 R 866768 CDS YP_003035415.1 253772584 8156827 complement(1221480..1222001) 1 NC_012947.1 KEGG: pnu:Pnuc_1431 ISPsy8, transposase OrfA; ISPsy8, transposase OrfA 1222001 8156827 ECBD_1164 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ISPsy8, transposase OrfA YP_003035415.1 1221480 R 866768 CDS YP_003035416.1 253772585 8156828 complement(1222085..1222930) 1 NC_012947.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 1222930 sseA 8156828 sseA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-mercaptopyruvate sulfurtransferase YP_003035416.1 1222085 R 866768 CDS YP_003035417.1 253772586 8156829 1223137..1228098 1 NC_012947.1 PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin 2; KEGG: ssn:SSON_2602 hypothetical protein; alpha-2-macroglobulin 1228098 8156829 ECBD_1166 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha-2-macroglobulin YP_003035417.1 1223137 D 866768 CDS YP_003035418.1 253772587 8156830 1228099..1230411 1 NC_012947.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 1230411 8156830 ECBD_1167 Escherichia coli 'BL21-Gold(DE3)pLysS AG' penicillin-binding protein 1C YP_003035418.1 1228099 D 866768 CDS YP_003035419.1 253772588 8156831 1230560..1230991 1 NC_012947.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1230991 ndk 8156831 ndk Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside diphosphate kinase YP_003035419.1 1230560 D 866768 CDS YP_003035420.1 253772589 8156832 1231141..1232295 1 NC_012947.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1232295 8156832 ECBD_1169 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosomal RNA large subunit methyltransferase N YP_003035420.1 1231141 D 866768 CDS YP_003035421.1 253772590 8156833 1232580..1233593 1 NC_012947.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E2891 helix-turn-helix DNA-binding domain protein; cytoskeletal protein RodZ 1233593 8156833 ECBD_1170 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoskeletal protein RodZ YP_003035421.1 1232580 D 866768 CDS YP_003035422.1 253772591 8156834 1233620..1234738 1 NC_012947.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1234738 ispG 8156834 ispG Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_003035422.1 1233620 D 866768 CDS YP_003035423.1 253772592 8156835 1234849..1236123 1 NC_012947.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1236123 hisS 8156835 hisS Escherichia coli 'BL21-Gold(DE3)pLysS AG' histidyl-tRNA synthetase YP_003035423.1 1234849 D 866768 CDS YP_003035424.1 253772593 8156836 1236141..1236761 1 NC_012947.1 KEGG: sdy:SDY_2709 hypothetical protein; hypothetical protein 1236761 8156836 ECBD_1173 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035424.1 1236141 D 866768 CDS YP_003035425.1 253772594 8156837 1236772..1237950 1 NC_012947.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1237950 8156837 ECBD_1174 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane protein assembly complex subunit YfgL YP_003035425.1 1236772 D 866768 CDS YP_003035426.1 253772595 8156838 1238068..1239540 1 NC_012947.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1239540 engA 8156838 engA Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTP-binding protein EngA YP_003035426.1 1238068 D 866768 CDS YP_003035427.1 253772596 8156839 1239610..1239825 1 NC_012947.1 PFAM: protein of unknown function DUF1407; KEGG: sfv:SFV_2557 hypothetical protein; hypothetical protein 1239825 8156839 ECBD_1176 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035427.1 1239610 D 866768 CDS YP_003035428.1 253772597 8156840 complement(1239822..1241192) 1 NC_012947.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1241192 xseA 8156840 xseA Escherichia coli 'BL21-Gold(DE3)pLysS AG' exodeoxyribonuclease VII large subunit YP_003035428.1 1239822 R 866768 CDS YP_003035429.1 253772598 8156841 1241354..1242820 1 NC_012947.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1242820 8156841 ECBD_1178 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inosine 5'-monophosphate dehydrogenase YP_003035429.1 1241354 D 866768 CDS YP_003035430.1 253772599 8156842 1242889..1244466 1 NC_012947.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1244466 guaA 8156842 guaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' GMP synthase YP_003035430.1 1242889 D 866768 CDS YP_003035431.1 253772600 8156843 complement(1244559..1245098) 1 NC_012947.1 hypothetical protein 1245098 8156843 ECBD_1180 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035431.1 1244559 R 866768 CDS YP_003035432.1 253772601 8156844 complement(1245114..1245629) 1 NC_012947.1 PFAM: 17 kDa surface antigen; KEGG: elf:LF82_3095 uncharacterized lipoprotein YfgH; 17 kDa surface antigen 1245629 8156844 ECBD_1181 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 17 kDa surface antigen YP_003035432.1 1245114 R 866768 CDS YP_003035433.1 253772602 8156845 complement(1245735..1245881) 1 NC_012947.1 hypothetical protein 1245881 8156845 ECBD_1182 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035433.1 1245735 R 866768 CDS YP_003035434.1 253772603 8156846 complement(1245943..1246134) 1 NC_012947.1 KEGG: ssn:SSON_2586 hypothetical protein; hypothetical protein 1246134 8156846 ECBD_1183 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035434.1 1245943 R 866768 CDS YP_003035435.1 253772604 8156847 1246152..1246304 1 NC_012947.1 hypothetical protein 1246304 8156847 ECBD_1184 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035435.1 1246152 D 866768 CDS YP_003035436.1 253772605 8156848 1246486..1248729 1 NC_012947.1 PFAM: MASE1 domain protein; EAL domain protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: ssn:SSON_2585 cytochrome C biogenesis protein; diguanylate cyclase/phosphodiesterase 1248729 8156848 ECBD_1185 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase/phosphodiesterase YP_003035436.1 1246486 D 866768 CDS YP_003035437.1 253772606 8156849 complement(1248768..1250309) 1 NC_012947.1 PFAM: Ppx/GppA phosphatase; KEGG: ssn:SSON_2584 exopolyphosphatase; exopolyphosphatase 1250309 8156849 ECBD_1186 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exopolyphosphatase YP_003035437.1 1248768 R 866768 CDS YP_003035438.1 253772607 8156850 complement(1250314..1252380) 1 NC_012947.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1252380 8156850 ECBD_1187 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polyphosphate kinase YP_003035438.1 1250314 R 866768 CDS YP_003035439.1 253772608 8156851 complement(1252551..1253189) 1 NC_012947.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1253189 purN 8156851 purN Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribosylglycinamide formyltransferase YP_003035439.1 1252551 R 866768 CDS YP_003035440.1 253772609 8156852 complement(1253189..1254226) 1 NC_012947.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1254226 8156852 ECBD_1189 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribosylaminoimidazole synthetase YP_003035440.1 1253189 R 866768 CDS YP_003035441.1 253772610 8156853 1254551..1255177 1 NC_012947.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1255177 upp 8156853 upp Escherichia coli 'BL21-Gold(DE3)pLysS AG' uracil phosphoribosyltransferase YP_003035441.1 1254551 D 866768 CDS YP_003035442.1 253772611 8156854 1255263..1256552 1 NC_012947.1 TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_2579 uracil transporter; uracil transporter 1256552 8156854 ECBD_1191 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uracil transporter YP_003035442.1 1255263 D 866768 CDS YP_003035443.1 253772612 8156855 1256602..1257348 1 NC_012947.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1257348 8156855 ECBD_1192 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA replication initiation factor YP_003035443.1 1256602 D 866768 CDS YP_003035444.1 253772613 8156856 complement(1257486..1257845) 1 NC_012947.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sdy:SDY_2684 oxidoreductase; arsenate reductase 1257845 8156856 ECBD_1193 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arsenate reductase YP_003035444.1 1257486 R 866768 CDS YP_003035445.1 253772614 8156857 complement(1257866..1259329) 1 NC_012947.1 PFAM: peptidase M48 Ste24p; KEGG: sfv:SFV_2539 hypothetical protein; peptidase M48 Ste24p 1259329 8156857 ECBD_1194 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase M48 Ste24p YP_003035445.1 1257866 R 866768 CDS YP_003035446.1 253772615 8156858 1259542..1260603 1 NC_012947.1 PFAM: protein of unknown function UPF0118; KEGG: sdy:SDY_2682 permease; hypothetical protein 1260603 8156858 ECBD_1195 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035446.1 1259542 D 866768 CDS YP_003035447.1 253772616 8156859 complement(1260641..1261489) 1 NC_012947.1 inner membrane protein presumed to act as a formate transporter; member of the hyf operon; formate transporter 1261489 focB 8156859 focB Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate transporter YP_003035447.1 1260641 R 866768 CDS YP_003035448.1 253772617 8156860 complement(1261511..1263523) 1 NC_012947.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: GAF domain protein; ATPase AAA; KEGG: ssn:SSON_2572 2-component regulator, interaction with sigma 54; Fis family transcriptional regulator 1263523 8156860 ECBD_1197 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Fis family transcriptional regulator YP_003035448.1 1261511 R 866768 CDS YP_003035449.1 253772618 8158487 complement(1263553..1263966) 1 NC_012947.1 PFAM: formate hydrogenlyase maturation HycH; KEGG: sfl:SF2534 protein processing element; formate hydrogenlyase maturation HycH 1263966 8158487 ECBD_1198 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate hydrogenlyase maturation HycH YP_003035449.1 1263553 R 866768 CDS YP_003035450.1 253772619 8157343 complement(1263959..1264717) 1 NC_012947.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: ssn:SSON_2570 hydrogenase 4 Fe-S subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 1264717 8157343 ECBD_1199 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH ubiquinone oxidoreductase 20 kDa subunit YP_003035450.1 1263959 R 866768 CDS YP_003035451.1 253772620 8157344 complement(1264714..1265253) 1 NC_012947.1 probable electron transfer protein for hydrogenase 4; hydrogenase 4 is believed to be silent in E. coli under conditions tested so far; hydrogenase 4 subunit H 1265253 8157344 ECBD_1200 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 4 subunit H YP_003035451.1 1264714 R 866768 CDS YP_003035452.1 253772621 8157345 complement(1265263..1266930) 1 NC_012947.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: ssn:SSON_2568 hydrogenase 4 subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1266930 8157345 ECBD_1201 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_003035452.1 1265263 R 866768 CDS YP_003035453.1 253772622 8157346 complement(1266920..1268500) 1 NC_012947.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ssn:SSON_2567 hydrogenase 4 subunit F; hydrogenase 4 subunit F 1268500 8157346 ECBD_1202 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 4 subunit F YP_003035453.1 1266920 R 866768 CDS YP_003035454.1 253772623 8157347 complement(1268505..1269155) 1 NC_012947.1 interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; hydrogenase 4 membrane subunit 1269155 hyfE 8157347 hyfE Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 4 membrane subunit YP_003035454.1 1268505 R 866768 CDS YP_003035455.1 253772624 8157348 complement(1269170..1270519) 1 NC_012947.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sfv:SFV_2529 hydrogenase 4 subunit D; hydrogenase 4 subunit D 1270519 8157348 ECBD_1204 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 4 subunit D YP_003035455.1 1269170 R 866768 CDS YP_003035456.1 253772625 8157349 complement(1270495..1270605) 1 NC_012947.1 KEGG: sfx:S2677 hydrogenase 4 subunit D; hydrogenase 4 subunit D 1270605 8157349 ECBD_1205 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 4 subunit D YP_003035456.1 1270495 R 866768 CDS YP_003035457.1 253772626 8157351 complement(1271579..1273597) 1 NC_012947.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ssn:SSON_2563 hydrogenase 4 subunit B; hydrogenase 4 subunit B 1273597 8157351 ECBD_1207 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 4 subunit B YP_003035457.1 1271579 R 866768 CDS YP_003035458.1 253772627 8157352 complement(1273597..1274214) 1 NC_012947.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2526 hydrogenase 4 Fe-S subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein 1274214 8157352 ECBD_1208 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003035458.1 1273597 R 866768 CDS YP_003035459.1 253772628 8157353 complement(1274467..1274937) 1 NC_012947.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 1274937 bcp 8157353 bcp Escherichia coli 'BL21-Gold(DE3)pLysS AG' thioredoxin-dependent thiol peroxidase YP_003035459.1 1274467 R 866768 CDS YP_003035460.1 253772629 8157354 complement(1274937..1275509) 1 NC_012947.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 1275509 gcvR 8157354 gcvR Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycine cleavage system transcriptional repressor YP_003035460.1 1274937 R 866768 CDS YP_003035461.1 253772630 8157355 1275655..1276533 1 NC_012947.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1276533 8157355 ECBD_1211 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydrodipicolinate synthase YP_003035461.1 1275655 D 866768 CDS YP_003035462.1 253772631 8157356 1276550..1277584 1 NC_012947.1 PFAM: NlpBDapX family lipoprotein; KEGG: ssn:SSON_2558 lipoprotein; lipoprotein 1277584 8157356 ECBD_1212 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein YP_003035462.1 1276550 D 866768 CDS YP_003035463.1 253772632 8157357 1277797..1278510 1 NC_012947.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1278510 8157357 ECBD_1213 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribosylaminoimidazole-succinocarboxamide synthase YP_003035463.1 1277797 D 866768 CDS YP_003035464.1 253772633 8157358 1278678..1279541 1 NC_012947.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: sfv:SFV_2520 hypothetical protein; hypothetical protein 1279541 8157358 ECBD_1214 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035464.1 1278678 D 866768 CDS YP_003035465.1 253772634 8157359 1279556..1281571 1 NC_012947.1 PFAM: protein of unknown function DUF699 ATPase ; GCN5-related N-acetyltransferase; KEGG: sfx:S2667 hypothetical protein; hypothetical protein 1281571 8157359 ECBD_1215 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035465.1 1279556 D 866768 CDS YP_003035466.1 253772635 8157360 1281645..1282343 1 NC_012947.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH 1282343 8157360 ECBD_1216 Escherichia coli 'BL21-Gold(DE3)pLysS AG' esterase YpfH YP_003035466.1 1281645 D 866768 CDS YP_003035467.1 253772636 8157361 complement(1282453..1282653) 1 NC_012947.1 KEGG: ssn:SSON_2553 inner membrane protein; hypothetical protein 1282653 8157361 ECBD_1217 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035467.1 1282453 R 866768 CDS YP_003035468.1 253772637 8157362 complement(1282681..1283808) 1 NC_012947.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1283808 8157362 ECBD_1218 Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinyl-diaminopimelate desuccinylase YP_003035468.1 1282681 R 866768 CDS YP_003035469.1 253772638 8157363 complement(1283812..1284168) 1 NC_012947.1 PFAM: arsenate reductase; KEGG: ssn:SSON_2551 hypothetical protein; hypothetical protein 1284168 8157363 ECBD_1219 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035469.1 1283812 R 866768 CDS YP_003035470.1 253772639 8157364 complement(1284707..1287820) 1 NC_012947.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; aminoglycoside/multidrug efflux system 1287820 8157364 ECBD_1220 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminoglycoside/multidrug efflux system YP_003035470.1 1284707 R 866768 CDS YP_003035471.1 253772640 8157365 complement(1287984..1289684) 1 NC_012947.1 KEGG: sdy:SDY_2653 nitrate/nitrite sensor protein NarQ; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; nitrate/nitrite sensor protein NarQ 1289684 8157365 ECBD_1221 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate/nitrite sensor protein NarQ YP_003035471.1 1287984 R 866768 CDS YP_003035472.1 253772641 8157366 1289890..1291869 1 NC_012947.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); oxidoreductase Fe-S binding subunit 1291869 8157366 ECBD_1222 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase Fe-S binding subunit YP_003035472.1 1289890 D 866768 CDS YP_003035473.1 253772642 8157367 1291937..1292512 1 NC_012947.1 PFAM: NUDIX hydrolase; KEGG: ssn:SSON_2547 hypothetical protein; NUDIX hydrolase 1292512 8157367 ECBD_1223 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NUDIX hydrolase YP_003035473.1 1291937 D 866768 CDS YP_003035474.1 253772643 8157368 1292638..1293681 1 NC_012947.1 PFAM: protein of unknown function DUF1176; KEGG: sbo:SBO_2482 hypothetical protein; hypothetical protein 1293681 8157368 ECBD_1224 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035474.1 1292638 D 866768 CDS YP_003035475.1 253772644 8157369 complement(1293776..1295779) 1 NC_012947.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1295779 8157369 ECBD_1225 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transketolase YP_003035475.1 1293776 R 866768 CDS YP_003035476.1 253772645 8157370 complement(1295799..1296749) 1 NC_012947.1 KEGG: elf:LF82_2215 transaldolase A; TIGRFAM: transaldolase; PFAM: transaldolase; transaldolase A 1296749 8157370 ECBD_1226 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transaldolase A YP_003035476.1 1295799 R 866768 CDS YP_003035477.1 253772646 8157371 1297038..1299317 1 NC_012947.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 1299317 8157371 ECBD_1227 Escherichia coli 'BL21-Gold(DE3)pLysS AG' malic enzyme YP_003035477.1 1297038 D 866768 CDS YP_003035478.1 253772647 8157372 1299610..1299945 1 NC_012947.1 PFAM: microcompartments protein; KEGG: sfv:SFV_2506 hypothetical protein; microcompartments protein 1299945 8157372 ECBD_1228 Escherichia coli 'BL21-Gold(DE3)pLysS AG' microcompartments protein YP_003035478.1 1299610 D 866768 CDS YP_003035479.1 253772648 8157373 1299958..1300437 1 NC_012947.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: sbc:SbBS512_E2827 ethanolamine utilization protein, EutP; ethanolamine utilization protein, EutP 1300437 8157373 ECBD_1229 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ethanolamine utilization protein, EutP YP_003035479.1 1299958 D 866768 CDS YP_003035480.1 253772649 8157374 1300412..1301113 1 NC_012947.1 PFAM: ethanolamine utilisation EutQ family protein; protein of unknown function DUF861 cupin_3; KEGG: ssn:SSON_2540 hypothetical protein; ethanolamine utilisation EutQ family protein 1301113 8157374 ECBD_1230 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ethanolamine utilisation EutQ family protein YP_003035480.1 1300412 D 866768 CDS YP_003035481.1 253772650 8157375 1301110..1301919 1 NC_012947.1 PFAM: cobalamin adenosyltransferase; KEGG: sbc:SbBS512_E2825 ethanolamine utilization cobalamin adenosyltransferase; Cob(I)yrinic acid a,c-diamide adenosyltransferase 1301919 8157375 ECBD_1231 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Cob(I)yrinic acid a,c-diamide adenosyltransferase YP_003035481.1 1301110 D 866768 CDS YP_003035482.1 253772651 8157376 1301909..1302925 1 NC_012947.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 1302925 eutD 8157376 eutD Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphotransacetylase YP_003035482.1 1301909 D 866768 CDS YP_003035483.1 253772652 8157377 1302964..1303257 1 NC_012947.1 PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2823 ethanolamine utilization protein EutM; microcompartments protein 1303257 8157377 ECBD_1233 Escherichia coli 'BL21-Gold(DE3)pLysS AG' microcompartments protein YP_003035483.1 1302964 D 866768 CDS YP_003035484.1 253772653 8157378 1303364..1303651 1 NC_012947.1 PFAM: ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: sbc:SbBS512_E2822 ethanolamine utilization protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1303651 8157378 ECBD_1234 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_003035484.1 1303364 D 866768 CDS YP_003035485.1 253772654 8157379 1303663..1305066 1 NC_012947.1 PFAM: aldehyde dehydrogenase; KEGG: sbo:SBO_2470 ethanolamine utilization; aldehyde dehydrogenase 1305066 8157379 ECBD_1235 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldehyde dehydrogenase YP_003035485.1 1303663 D 866768 CDS YP_003035486.1 253772655 8157380 1305077..1305913 1 NC_012947.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: sbc:SbBS512_E2820 ethanolamine utilization protein EutJ; ethanolamine utilization protein EutJ family protein 1305913 8157380 ECBD_1236 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ethanolamine utilization protein EutJ family protein YP_003035486.1 1305077 D 866768 CDS YP_003035487.1 253772656 8157381 1305903..1307090 1 NC_012947.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ssn:SSON_2533 EutG; iron-containing alcohol dehydrogenase 1307090 8157381 ECBD_1237 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-containing alcohol dehydrogenase YP_003035487.1 1305903 D 866768 CDS YP_003035488.1 253772657 8157382 1307191..1307391 1 NC_012947.1 hypothetical protein 1307391 8157382 ECBD_1238 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035488.1 1307191 D 866768 CDS YP_003035489.1 253772658 8157383 1307407..1308633 1 NC_012947.1 PFAM: ethanolamine utilisation protein EutH; KEGG: ssn:SSON_2532 EutH; ethanolamine utilisation protein EutH 1308633 8157383 ECBD_1239 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ethanolamine utilisation protein EutH YP_003035489.1 1307407 D 866768 CDS YP_003035490.1 253772659 8157384 1308630..1310033 1 NC_012947.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 1310033 eutA 8157384 eutA Escherichia coli 'BL21-Gold(DE3)pLysS AG' reactivating factor for ethanolamine ammonia lyase YP_003035490.1 1308630 D 866768 CDS YP_003035491.1 253772660 8157385 1310045..1311406 1 NC_012947.1 PFAM: ethanolamine ammonia lyase large subunit; KEGG: sbc:SbBS512_E2816 ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia-lyase 1311406 8157385 ECBD_1241 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ethanolamine ammonia-lyase YP_003035491.1 1310045 D 866768 CDS YP_003035492.1 253772661 8157386 1311427..1312314 1 NC_012947.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1312314 8157386 ECBD_1242 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ethanolamine ammonia-lyase small subunit YP_003035492.1 1311427 D 866768 CDS YP_003035493.1 253772662 8157387 1312324..1312983 1 NC_012947.1 PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2811 ethanolamine utilization protein EutL; microcompartments protein 1312983 8157387 ECBD_1243 Escherichia coli 'BL21-Gold(DE3)pLysS AG' microcompartments protein YP_003035493.1 1312324 D 866768 CDS YP_003035494.1 253772663 8157388 1312996..1313496 1 NC_012947.1 PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2810 ethanolamine utilization protein EutK; microcompartments protein 1313496 8157388 ECBD_1244 Escherichia coli 'BL21-Gold(DE3)pLysS AG' microcompartments protein YP_003035494.1 1312996 D 866768 CDS YP_003035495.1 253772664 8157389 1313542..1314594 1 NC_012947.1 activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR 1314594 8157389 ECBD_1245 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator EutR YP_003035495.1 1313542 D 866768 CDS YP_003035496.1 253772665 8157390 complement(1314600..1315499) 1 NC_012947.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1315499 8157390 ECBD_1246 Escherichia coli 'BL21-Gold(DE3)pLysS AG' coproporphyrinogen III oxidase YP_003035496.1 1314600 R 866768 CDS YP_003035497.1 253772666 8157391 complement(1315503..1316372) 1 NC_012947.1 KEGG: ssn:SSON_2524 N-acetylmuramoyl-L-alanine amidase I; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; N-acetylmuramoyl-l-alanine amidase I 1316372 8157391 ECBD_1247 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylmuramoyl-l-alanine amidase I YP_003035497.1 1315503 R 866768 CDS YP_003035498.1 253772667 8157392 1316586..1317011 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_2523 acetyltransferase; acetyltransferase 1317011 8157392 ECBD_1248 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyltransferase YP_003035498.1 1316586 D 866768 CDS YP_003035499.1 253772668 8157393 1316998..1317447 1 NC_012947.1 KEGG: ssn:SSON_2522 hypothetical protein; hypothetical protein 1317447 8157393 ECBD_1249 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035499.1 1316998 D 866768 CDS YP_003035500.1 253772669 8157394 1317654..1318229 1 NC_012947.1 PFAM: protein of unknown function DUF1131; KEGG: sbc:SbBS512_E2804 lipoprotein; hypothetical protein 1318229 8157394 ECBD_1250 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035500.1 1317654 D 866768 CDS YP_003035501.1 253772670 8157395 1318325..1319224 1 NC_012947.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sbc:SbBS512_E2803 dyp-type peroxidase family protein; Dyp-type peroxidase family 1319224 8157395 ECBD_1251 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Dyp-type peroxidase family YP_003035501.1 1318325 D 866768 CDS YP_003035502.1 253772671 8157396 complement(1319404..1320828) 1 NC_012947.1 belongs to PEP-dependent PTS system; contains the PTS EIIBC domains; involved in uptake of exogenous N-acetylmuramic acid (MurNAc); requires crr-encoded enzyme IIA-glucose component; PTS system N-acetylmuramic acid transporter subunits EIIBC 1320828 murP 8157396 murP Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N-acetylmuramic acid transporter subunits EIIBC YP_003035502.1 1319404 R 866768 CDS YP_003035503.1 253772672 8157397 complement(1320832..1321728) 1 NC_012947.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 1321728 murQ 8157397 murQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylmuramic acid-6-phosphate etherase YP_003035503.1 1320832 R 866768 CDS YP_003035504.1 253772673 8157398 1321892..1322749 1 NC_012947.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbc:SbBS512_E2799 RpiR family transcriptional regulator; RpiR family transcriptional regulator 1322749 8157398 ECBD_1254 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RpiR family transcriptional regulator YP_003035504.1 1321892 D 866768 CDS YP_003035505.1 253772674 8157399 1322878..1323669 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2515 short chain dehydrogenase; short chain dehydrogenase 1323669 8157399 ECBD_1255 Escherichia coli 'BL21-Gold(DE3)pLysS AG' short chain dehydrogenase YP_003035505.1 1322878 D 866768 CDS YP_003035506.1 253772675 8157400 1323973..1324989 1 NC_012947.1 TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sdy:SDY_2621 thiosulfate transporter subunit; thiosulfate transporter subunit 1324989 8157400 ECBD_1256 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiosulfate transporter subunit YP_003035506.1 1323973 D 866768 CDS YP_003035507.1 253772676 8157401 1324989..1325822 1 NC_012947.1 TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysT; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfv:SFV_2477 sulfate/thiosulfate transporter subunit; sulfate/thiosulfate transporter subunit 1325822 8157401 ECBD_1257 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfate/thiosulfate transporter subunit YP_003035507.1 1324989 D 866768 CDS YP_003035508.1 253772677 8157402 1325822..1326697 1 NC_012947.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 1326697 cysW 8157402 cysW Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfate/thiosulfate transporter permease subunit YP_003035508.1 1325822 D 866768 CDS YP_003035509.1 253772678 8157403 1326687..1327784 1 NC_012947.1 KEGG: sbo:SBO_2447 sulfate/thiosulfate transporter subunit; TIGRFAM: sulfate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA; sulfate/thiosulfate transporter subunit 1327784 8157403 ECBD_1259 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfate/thiosulfate transporter subunit YP_003035509.1 1326687 D 866768 CDS YP_003035510.1 253772679 8157404 1327918..1328829 1 NC_012947.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1328829 cysM 8157404 cysM Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine synthase B YP_003035510.1 1327918 D 866768 CDS YP_003035511.1 253772680 8157405 complement(1329034..1329768) 1 NC_012947.1 PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: sfv:SFV_2472 hypothetical protein; WGR domain protein 1329768 8157405 ECBD_1261 Escherichia coli 'BL21-Gold(DE3)pLysS AG' WGR domain protein YP_003035511.1 1329034 R 866768 CDS YP_003035512.1 253772681 8157406 complement(1329801..1330175) 1 NC_012947.1 KEGG: sfv:SFV_2471 hypothetical protein; hypothetical protein 1330175 8157406 ECBD_1262 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035512.1 1329801 R 866768 CDS YP_003035513.1 253772682 8157407 1330280..1331131 1 NC_012947.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 1331131 pdxK 8157407 pdxK Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyridoxal kinase YP_003035513.1 1330280 D 866768 CDS YP_003035514.1 253772683 8157408 complement(1331174..1331683) 1 NC_012947.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 1331683 8157408 ECBD_1264 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system glucose-specific transporter subunit YP_003035514.1 1331174 R 866768 CDS YP_003035515.1 253772684 8157409 complement(1331724..1333451) 1 NC_012947.1 phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transporter; phosphoenolpyruvate-protein phosphotransferase 1333451 8157409 ECBD_1265 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoenolpyruvate-protein phosphotransferase YP_003035515.1 1331724 R 866768 CDS YP_003035516.1 253772685 8157410 complement(1333496..1333753) 1 NC_012947.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: sea:SeAg_B2576 phosphohistidinoprotein-hexose phosphotransferase component of PTS system (HPr); PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr 1333753 8157410 ECBD_1266 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr YP_003035516.1 1333496 R 866768 CDS YP_003035517.1 253772686 8157411 complement(1334137..1335108) 1 NC_012947.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 1335108 8157411 ECBD_1267 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine synthase A YP_003035517.1 1334137 R 866768 CDS YP_003035518.1 253772687 8157412 complement(1335101..1335265) 1 NC_012947.1 hypothetical protein 1335265 8157412 ECBD_1268 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035518.1 1335101 R 866768 CDS YP_003035519.1 253772688 8157413 complement(1335293..1336054) 1 NC_012947.1 role in sulfur assimilation; sulfate transporter CysZ 1336054 8157413 ECBD_1269 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfate transporter CysZ YP_003035519.1 1335293 R 866768 CDS YP_003035520.1 253772689 8157414 1336284..1337270 1 NC_012947.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 1337270 8157414 ECBD_1270 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein ZipA YP_003035520.1 1336284 D 866768 CDS YP_003035521.1 253772690 8157415 1337341..1339356 1 NC_012947.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1339356 ligA 8157415 ligA Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD-dependent DNA ligase LigA YP_003035521.1 1337341 D 866768 CDS YP_003035522.1 253772691 8157416 1339358..1339576 1 NC_012947.1 KEGG: ssn:SSON_2499 cytoplasmic protein; cytoplasmic protein 1339576 8157416 ECBD_1272 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic protein YP_003035522.1 1339358 D 866768 CDS YP_003035523.1 253772692 8157417 complement(1339573..1340571) 1 NC_012947.1 PFAM: sodium symporter; sodium symporter 1340571 8157417 ECBD_1273 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sodium symporter YP_003035523.1 1339573 R 866768 CDS YP_003035524.1 253772693 8157418 1340661..1341587 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbc:SbBS512_E2773 LysR family transcriptional regulator; LysR family transcriptional regulator 1341587 8157418 ECBD_1274 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003035524.1 1340661 D 866768 CDS YP_003035525.1 253772694 8157419 complement(1341578..1341919) 1 NC_012947.1 KEGG: sfl:SF2463 hypothetical protein; hypothetical protein 1341919 8157419 ECBD_1275 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035525.1 1341578 R 866768 CDS YP_003035526.1 253772695 8157910 1342695..1344110 1 NC_012947.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1344110 gltX 8157910 gltX Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamyl-tRNA synthetase YP_003035526.1 1342695 D 866768 CDS YP_003035527.1 253772696 8157911 complement(1344162..1344554) 1 NC_012947.1 PFAM: protein of unknown function DUF1323; KEGG: sbc:SbBS512_E2780 hypothetical protein; hypothetical protein 1344554 8157911 ECBD_1277 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035527.1 1344162 R 866768 CDS YP_003035528.1 253772697 8157912 complement(1344556..1344900) 1 NC_012947.1 PFAM: protein of unknown function DUF1323; KEGG: ssn:SSON_2489 hypothetical protein; hypothetical protein 1344900 8157912 ECBD_1278 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035528.1 1344556 R 866768 CDS YP_003035529.1 253772698 8157915 1345535..1347724 1 NC_012947.1 PFAM: EAL domain protein; GGDEF domain containing protein; MASE1 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: sbo:SBO_2421 hypothetical protein; diguanylate cyclase/phosphodiesterase 1347724 8157915 ECBD_1279 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase/phosphodiesterase YP_003035529.1 1345535 D 866768 CDS YP_003035530.1 253772699 8157916 complement(1347774..1348976) 1 NC_012947.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; nucleoside recognition domain protein; Na+ dependent nucleoside transporter; KEGG: sfv:SFV_2450 permease of transport system for 3 nucleosides; nucleoside transporter 1348976 8157916 ECBD_1280 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside transporter YP_003035530.1 1347774 R 866768 CDS YP_003035531.1 253772700 8157917 1349312..1350550 1 NC_012947.1 TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: sbc:SbBS512_E2760 manganese transporter MntH; manganese transporter MntH 1350550 8157917 ECBD_1281 Escherichia coli 'BL21-Gold(DE3)pLysS AG' manganese transporter MntH YP_003035531.1 1349312 D 866768 CDS YP_003035532.1 253772701 8157918 complement(1350691..1351017) 1 NC_012947.1 KEGG: ssn:SSON_2482 hypothetical protein; hypothetical protein 1351017 8157918 ECBD_1282 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035532.1 1350691 R 866768 CDS YP_003035533.1 253772702 8157919 complement(1351132..1352388) 1 NC_012947.1 PFAM: chloride channel core; KEGG: sbc:SbBS512_E2758 chloride transporter chloride channel (ClC) family; hypothetical protein 1352388 8157919 ECBD_1283 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035533.1 1351132 R 866768 CDS YP_003035534.1 253772703 8157920 1352592..1353557 1 NC_012947.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1353557 glk 8157920 glk Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucokinase YP_003035534.1 1352592 D 866768 CDS YP_003035535.1 253772704 8157921 1353776..1354102 1 NC_012947.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; KEGG: ssn:SSON_2479 PTS system enzyme IIB component; PTS system fructose-specific transporter subunit IIB 1354102 8157921 ECBD_1285 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system fructose-specific transporter subunit IIB YP_003035535.1 1353776 D 866768 CDS YP_003035536.1 253772705 8157922 1354124..1355371 1 NC_012947.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: sbc:SbBS512_E2755 PTS system, fructose-like, IIC component; PTS system, fructose subfamily, IIC subunit 1355371 8157922 ECBD_1286 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, fructose subfamily, IIC subunit YP_003035536.1 1354124 D 866768 CDS YP_003035537.1 253772706 8157923 1355386..1356471 1 NC_012947.1 Xaa-Pro aminopeptidase; limited methionine aminopeptidase; aminopeptidase 1356471 8157923 ECBD_1287 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminopeptidase YP_003035537.1 1355386 D 866768 CDS YP_003035538.1 253772707 8157924 1356471..1357508 1 NC_012947.1 metalloprotein; exoaminopeptidase 1357508 8157924 ECBD_1288 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exoaminopeptidase YP_003035538.1 1356471 D 866768 CDS YP_003035539.1 253772708 8157925 1357533..1360028 1 NC_012947.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PTS system, fructose subfamily, IIsubunit alpha; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoryl transfer system HPr; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sfv:SFV_2441 PTS system enzyme IIA component, enzyme I; phosphoenolpyruvate-protein phosphotransferase 1360028 8157925 ECBD_1289 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoenolpyruvate-protein phosphotransferase YP_003035539.1 1357533 D 866768 CDS YP_003035540.1 253772709 8157926 complement(1360031..1360888) 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ssn:SSON_2474 AraC-type regulatory protein; AraC family transcriptional regulator 1360888 8157926 ECBD_1290 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003035540.1 1360031 R 866768 CDS YP_003035541.1 253772710 8157927 complement(1360901..1361635) 1 NC_012947.1 PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; KEGG: sfx:S2585 2-component transcriptional regulator; two component transcriptional regulator, LytTR family 1361635 8157927 ECBD_1291 Escherichia coli 'BL21-Gold(DE3)pLysS AG' two component transcriptional regulator, LytTR family YP_003035541.1 1360901 R 866768 CDS YP_003035542.1 253772711 8157928 complement(1361650..1363347) 1 NC_012947.1 KEGG: sbo:SBO_2406 sensor protein; PFAM: histidine kinase internal region; GAF domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; signal transduction histidine kinase, LytS 1363347 8157928 ECBD_1292 Escherichia coli 'BL21-Gold(DE3)pLysS AG' signal transduction histidine kinase, LytS YP_003035542.1 1361650 R 866768 CDS YP_003035543.1 253772712 8157929 1363724..1364962 1 NC_012947.1 PFAM: aminotransferase class I and II; aminotransferase 1364962 8157929 ECBD_1293 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminotransferase YP_003035543.1 1363724 D 866768 CDS YP_003035544.1 253772713 8157930 complement(1365454..1366374) 1 NC_012947.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 1366374 8157930 ECBD_1294 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipid A biosynthesis palmitoleoyl acyltransferase YP_003035544.1 1365454 R 866768 CDS YP_003035545.1 253772714 8157931 1366727..1366969 1 NC_012947.1 KEGG: ssn:SSON_2468 hypothetical protein; hypothetical protein 1366969 8157931 ECBD_1295 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035545.1 1366727 D 866768 CDS YP_003035546.1 253772715 8157932 complement(1367046..1367321) 1 NC_012947.1 KEGG: ssn:SSON_2467 hypothetical protein; hypothetical protein 1367321 8157932 ECBD_1296 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035546.1 1367046 R 866768 CDS YP_003035547.1 253772716 8157933 1367617..1368249 1 NC_012947.1 KEGG: sdy:SDY_2573 hypothetical protein; hypothetical protein 1368249 8157933 ECBD_1297 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035547.1 1367617 D 866768 CDS YP_003035548.1 253772717 8157934 1368762..1370012 1 NC_012947.1 catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase 1370012 8157934 ECBD_1298 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formyl-coenzyme A transferase YP_003035548.1 1368762 D 866768 CDS YP_003035549.1 253772718 8157935 1370066..1371760 1 NC_012947.1 catalyzes the formation of formyl-CoA from oxalyl-CoA; oxalyl-CoA decarboxylase 1371760 8157935 ECBD_1299 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxalyl-CoA decarboxylase YP_003035549.1 1370066 D 866768 CDS YP_003035550.1 253772719 8157936 1371830..1372774 1 NC_012947.1 member of the AEC family of auxin efflux transporters; unknown function; transporter YfdV 1372774 8157936 ECBD_1300 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter YfdV YP_003035550.1 1371830 D 866768 CDS YP_003035551.1 253772720 8157937 1372848..1373993 1 NC_012947.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sbo:SBO_2397 hypothetical protein; hypothetical protein 1373993 8157937 ECBD_1301 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035551.1 1372848 D 866768 CDS YP_003035552.1 253772721 8157938 complement(1374049..1377642) 1 NC_012947.1 PFAM: response regulator receiver; extracellular solute-binding protein family 3; Hpt domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; Hpt domain protein; extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; KEGG: sfv:SFV_2429 hybrid sensory histidine kinase in two-component regulatory system with EvgA; hybrid sensory histidine kinase in two-component regulatory system with EvgA 1377642 8157938 ECBD_1302 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hybrid sensory histidine kinase in two-component regulatory system with EvgA YP_003035552.1 1374049 R 866768 CDS YP_003035553.1 253772722 8157939 complement(1377647..1378261) 1 NC_012947.1 response regulator in two-component regulatory system with EvgS; phosphorylated EvgA activates ompC, emrKY, gadABC, hdeAB and others genes; involved in acid resistance, osmotic adaption, and drug resistance; EvgA family transcriptional regulator 1378261 8157939 ECBD_1303 Escherichia coli 'BL21-Gold(DE3)pLysS AG' EvgA family transcriptional regulator YP_003035553.1 1377647 R 866768 CDS YP_003035554.1 253772723 8157940 1378677..1379840 1 NC_012947.1 TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E2737 drug resistance MFS transporter membrane fusion protein (MFP) subunit EmrK; efflux pump membrane protein 1379840 8157940 ECBD_1304 Escherichia coli 'BL21-Gold(DE3)pLysS AG' efflux pump membrane protein YP_003035554.1 1378677 D 866768 CDS YP_003035555.1 253772724 8157941 1379840..1381378 1 NC_012947.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_2393 multidrug resistance protein Y; drug resistance transporter EmrB/QacA subfamily 1381378 8157941 ECBD_1305 Escherichia coli 'BL21-Gold(DE3)pLysS AG' drug resistance transporter EmrB/QacA subfamily YP_003035555.1 1379840 D 866768 CDS YP_003035556.1 253772725 8157942 complement(1381486..1382814) 1 NC_012947.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 1382814 8157942 ECBD_1306 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-serine dehydratase YP_003035556.1 1381486 R 866768 CDS YP_003035557.1 253772726 8157943 complement(1382832..1384169) 1 NC_012947.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 1384169 8157943 ECBD_1307 Escherichia coli 'BL21-Gold(DE3)pLysS AG' permease DsdX YP_003035557.1 1382832 R 866768 CDS YP_003035558.1 253772727 8157944 1384387..1385322 1 NC_012947.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 1385322 8157944 ECBD_1308 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator DsdC YP_003035558.1 1384387 D 866768 CDS YP_003035559.1 253772728 8157946 complement(1385568..1386500) 1 NC_012947.1 PFAM: formate/nitrite transporter; KEGG: sdy:SDY_2551 transport; formate/nitrite transporter 1386500 8157946 ECBD_1309 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate/nitrite transporter YP_003035559.1 1385568 R 866768 CDS YP_003035560.1 253772729 8157947 1386598..1386768 1 NC_012947.1 KEGG: cko:CKO_00445 hypothetical protein; hypothetical protein 1386768 8157947 ECBD_1310 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035560.1 1386598 D 866768 CDS YP_003035561.1 253772730 8157948 1386794..1387549 1 NC_012947.1 PFAM: VacJ family lipoprotein; KEGG: sdy:SDY_2550 lipoprotein precursor; VacJ family lipoprotein 1387549 8157948 ECBD_1311 Escherichia coli 'BL21-Gold(DE3)pLysS AG' VacJ family lipoprotein YP_003035561.1 1386794 D 866768 CDS YP_003035562.1 253772731 8157950 1388089..1388364 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 1388364 8157950 ECBD_1313 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003035562.1 1388089 D 866768 CDS YP_003035563.1 253772732 8157951 1388283..1388786 1 NC_012947.1 PFAM: IS1 transposase; IS1 transposase 1388786 8157951 ECBD_1314 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003035563.1 1388283 D 866768 CDS YP_003035564.1 253772733 8157953 complement(1389933..1391273) 1 NC_012947.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: ssn:SSON_2400 long-chain fatty acid outer membrane transporter; long-chain fatty acid outer membrane transporter 1391273 8157953 ECBD_1316 Escherichia coli 'BL21-Gold(DE3)pLysS AG' long-chain fatty acid outer membrane transporter YP_003035564.1 1389933 R 866768 CDS YP_003035565.1 253772734 8157954 1391645..1391929 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: elf:LF82_3071 UPF0381 protein YfcZ; hypothetical protein 1391929 8157954 ECBD_1317 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035565.1 1391645 D 866768 CDS YP_003035566.1 253772735 8157955 1392110..1393420 1 NC_012947.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1393420 fadI 8157955 fadI Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-ketoacyl-CoA thiolase YP_003035566.1 1392110 D 866768 CDS YP_003035567.1 253772736 8157956 1393420..1395564 1 NC_012947.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1395564 fadJ 8157956 fadJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' multifunctional fatty acid oxidation complex subunit alpha YP_003035567.1 1393420 D 866768 CDS YP_003035568.1 253772737 8157957 1395767..1396252 1 NC_012947.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: phosphoglycerate mutase; KEGG: ssn:SSON_2396 phosphohistidine phosphatase; phosphohistidine phosphatase 1396252 8157957 ECBD_1320 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphohistidine phosphatase YP_003035568.1 1395767 D 866768 CDS YP_003035569.1 253772738 8157958 1396932..1397495 1 NC_012947.1 PFAM: fimbrial protein; KEGG: sfx:S2550 fimbrial-like protein; fimbrial protein 1397495 8157958 ECBD_1321 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003035569.1 1396932 D 866768 CDS YP_003035570.1 253772739 8157959 1397578..1400223 1 NC_012947.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: ssn:SSON_2394 PapC-like porin protein; fimbrial biogenesis outer membrane usher protein 1400223 8157959 ECBD_1322 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial biogenesis outer membrane usher protein YP_003035570.1 1397578 D 866768 CDS YP_003035571.1 253772740 8157960 1400243..1400995 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: sfv:SFV_2405 chaperone; Pili assembly chaperone, N-terminal 1400995 8157960 ECBD_1323 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Pili assembly chaperone, N-terminal YP_003035571.1 1400243 D 866768 CDS YP_003035572.1 253772741 8157961 1401012..1401518 1 NC_012947.1 KEGG: elf:LF82_p369 hypothetical protein YfcR; hypothetical protein 1401518 8157961 ECBD_1324 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035572.1 1401012 D 866768 CDS YP_003035573.1 253772742 8157962 1401515..1401994 1 NC_012947.1 PFAM: fimbrial protein; KEGG: sdy:SDY_2533 hypothetical protein; fimbrial protein 1401994 8157962 ECBD_1325 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003035573.1 1401515 D 866768 CDS YP_003035574.1 253772743 8157963 1401991..1402542 1 NC_012947.1 PFAM: fimbrial protein; KEGG: elf:LF82_p367 hypothetical fimbrial-like protein YfcP; fimbrial protein 1402542 8157963 ECBD_1326 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003035574.1 1401991 D 866768 CDS YP_003035575.1 253772744 8157964 1402544..1403368 1 NC_012947.1 KEGG: sfv:SFV_2401 hypothetical protein; hypothetical protein 1403368 8157964 ECBD_1327 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035575.1 1402544 D 866768 CDS YP_003035576.1 253772745 8157965 complement(1403494..1404045) 1 NC_012947.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: elf:LF82_3070 UPF0115 protein YfcN; hypothetical protein 1404045 8157965 ECBD_1328 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035576.1 1403494 R 866768 CDS YP_003035577.1 253772746 8157966 1404211..1405143 1 NC_012947.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1405143 8157966 ECBD_1329 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_003035577.1 1404211 D 866768 CDS YP_003035578.1 253772747 8157967 1405178..1406263 1 NC_012947.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1406263 8157967 ECBD_1330 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chorismate synthase YP_003035578.1 1405178 D 866768 CDS YP_003035579.1 253772748 8157968 1406267..1407091 1 NC_012947.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 1407091 mepA 8157968 mepA Escherichia coli 'BL21-Gold(DE3)pLysS AG' penicillin-insensitive murein endopeptidase YP_003035579.1 1406267 D 866768 CDS YP_003035580.1 253772749 8157969 1407091..1407900 1 NC_012947.1 PFAM: protein of unknown function DUF81; KEGG: sbc:SbBS512_E2705 hypothetical protein; hypothetical protein 1407900 8157969 ECBD_1332 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035580.1 1407091 D 866768 CDS YP_003035581.1 253772750 8157970 1407900..1408448 1 NC_012947.1 PFAM: protein of unknown function DUF462; KEGG: ssn:SSON_2384 transporting ATPase; hypothetical protein 1408448 8157970 ECBD_1333 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035581.1 1407900 D 866768 CDS YP_003035582.1 253772751 8157971 1408482..1408760 1 NC_012947.1 PFAM: YfcL protein; KEGG: sdy:SDY_2524 hypothetical protein; YfcL protein 1408760 8157971 ECBD_1334 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YfcL protein YP_003035582.1 1408482 D 866768 CDS YP_003035583.1 253772752 8157972 complement(1408881..1410887) 1 NC_012947.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 1410887 mnmC 8157972 mnmC Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5-methylaminomethyl-2-thiouridine methyltransferase YP_003035583.1 1408881 R 866768 CDS YP_003035584.1 253772753 8157973 1411046..1412266 1 NC_012947.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 1412266 8157973 ECBD_1336 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-oxoacyl-(acyl carrier protein) synthase I YP_003035584.1 1411046 D 866768 CDS YP_003035585.1 253772754 8157974 1412531..1413709 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S2533 hypothetical protein; hypothetical protein 1413709 8157974 ECBD_1337 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035585.1 1412531 D 866768 CDS YP_003035586.1 253772755 8157975 complement(1413706..1414701) 1 NC_012947.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 1414701 flk 8157975 flk Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagella biosynthesis regulator YP_003035586.1 1413706 R 866768 CDS YP_003035587.1 253772756 8157976 1414800..1415936 1 NC_012947.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E2698 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region 1415936 8157976 ECBD_1339 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-isomer specific 2-hydroxyacid dehydrogenase catalytic region YP_003035587.1 1414800 D 866768 CDS YP_003035588.1 253772757 8157977 1416002..1417015 1 NC_012947.1 PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding; KEGG: ssn:SSON_2377 hypothetical protein; semialdehyde dehydrogenase 1417015 8157977 ECBD_1340 Escherichia coli 'BL21-Gold(DE3)pLysS AG' semialdehyde dehydrogenase YP_003035588.1 1416002 D 866768 CDS YP_003035589.1 253772758 8157978 1417015..1417827 1 NC_012947.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1417827 truA 8157978 truA Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA pseudouridine synthase A YP_003035589.1 1417015 D 866768 CDS YP_003035590.1 253772759 8157979 1417910..1418569 1 NC_012947.1 PFAM: SNARE associated Golgi protein; KEGG: sfv:SFV_2386 hypothetical protein; hypothetical protein 1418569 8157979 ECBD_1342 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035590.1 1417910 D 866768 CDS YP_003035591.1 253772760 8157980 1418725..1419639 1 NC_012947.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1419639 8157980 ECBD_1343 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl-CoA carboxylase subunit beta YP_003035591.1 1418725 D 866768 CDS YP_003035592.1 253772761 8157981 1419709..1420977 1 NC_012947.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sfv:SFV_2384 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1420977 8157981 ECBD_1344 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_003035592.1 1419709 D 866768 CDS YP_003035593.1 253772762 8157982 1420967..1421629 1 NC_012947.1 PFAM: sporulation domain protein; KEGG: ssn:SSON_2372 hypothetical protein; hypothetical protein 1421629 8157982 ECBD_1345 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035593.1 1420967 D 866768 CDS YP_003035594.1 253772763 8157983 1421888..1422376 1 NC_012947.1 membrane protein required for colicin V production; colicin V production protein 1422376 8157983 ECBD_1346 Escherichia coli 'BL21-Gold(DE3)pLysS AG' colicin V production protein YP_003035594.1 1421888 D 866768 CDS YP_003035595.1 253772764 8157984 1422413..1423930 1 NC_012947.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1423930 8157984 ECBD_1347 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amidophosphoribosyltransferase YP_003035595.1 1422413 D 866768 CDS YP_003035596.1 253772765 8157985 1424025..1424594 1 NC_012947.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1424594 8157985 ECBD_1348 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003035596.1 1424025 D 866768 CDS YP_003035597.1 253772766 8157986 1424860..1425642 1 NC_012947.1 KEGG: sbc:SbBS512_E2688 lysine-arginine-ornithine-binding periplasmic protein; TIGRFAM: cationic amino acid ABC transporter periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; cationic amino acid ABC transporter periplasmic binding protein 1425642 8157986 ECBD_1349 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cationic amino acid ABC transporter periplasmic binding protein YP_003035597.1 1424860 D 866768 CDS YP_003035598.1 253772767 8157987 1425863..1426645 1 NC_012947.1 KEGG: ssn:SSON_2367 histidine-binding periplasmic protein of high-affinity histidine transporter; TIGRFAM: cationic amino acid ABC transporter periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; cationic amino acid ABC transporter periplasmic binding protein 1426645 8157987 ECBD_1350 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cationic amino acid ABC transporter periplasmic binding protein YP_003035598.1 1425863 D 866768 CDS YP_003035599.1 253772768 8157988 1426735..1427421 1 NC_012947.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sdy:SDY_2507 histidine transporter permease; polar amino acid ABC transporter permease 1427421 8157988 ECBD_1351 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polar amino acid ABC transporter permease YP_003035599.1 1426735 D 866768 CDS YP_003035600.1 253772769 8158579 1427418..1428134 1 NC_012947.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sdy:SDY_2506 histidine transport, membrane protein M; polar amino acid ABC transporter permease 1428134 8158579 ECBD_1352 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polar amino acid ABC transporter permease YP_003035600.1 1427418 D 866768 CDS YP_003035601.1 253772770 8156257 1428142..1428915 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sbc:SbBS512_E2684 histidine ABC transporter ATP-binding protein; histidine/lysine/arginine/ornithine transporter subunit 1428915 8156257 ECBD_1353 Escherichia coli 'BL21-Gold(DE3)pLysS AG' histidine/lysine/arginine/ornithine transporter subunit YP_003035601.1 1428142 D 866768 CDS YP_003035602.1 253772771 8156258 1429112..1430002 1 NC_012947.1 PFAM: transposase YhgA family protein; KEGG: sfv:SFV_2372 hypothetical protein; transposase YhgA family protein 1430002 8156258 ECBD_1354 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase YhgA family protein YP_003035602.1 1429112 D 866768 CDS YP_003035603.1 253772772 8156259 complement(1430050..1430943) 1 NC_012947.1 PFAM: hypothetical protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: sbo:SBO_2339 sugar nucleotide epimerase; hypothetical protein 1430943 8156259 ECBD_1355 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035603.1 1430050 R 866768 CDS YP_003035604.1 253772773 8156260 complement(1430964..1431326) 1 NC_012947.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 1431326 folX 8156260 folX Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_003035604.1 1430964 R 866768 CDS YP_003035605.1 253772774 8156261 complement(1431383..1432030) 1 NC_012947.1 PFAM: glutathione S-transferase domain; KEGG: sbc:SbBS512_E2678 glutathione S-transferase; glutathione S-transferase 1432030 8156261 ECBD_1357 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione S-transferase YP_003035605.1 1431383 R 866768 CDS YP_003035606.1 253772775 8156262 1432166..1432810 1 NC_012947.1 PFAM: glutathione S-transferase domain; KEGG: sbc:SbBS512_E2677 glutathione S-transferase domain protein; glutathione S-transferase domain protein 1432810 8156262 ECBD_1358 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione S-transferase domain protein YP_003035606.1 1432166 D 866768 CDS YP_003035607.1 253772776 8156263 1432866..1433417 1 NC_012947.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: ssn:SSON_2357 phosphodiesterase; phosphodiesterase 1433417 8156263 ECBD_1359 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphodiesterase YP_003035607.1 1432866 D 866768 CDS YP_003035608.1 253772777 8156264 1433475..1434017 1 NC_012947.1 PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E2675 hydrolase, NUDIX family protein; NUDIX hydrolase 1434017 8156264 ECBD_1360 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NUDIX hydrolase YP_003035608.1 1433475 D 866768 CDS YP_003035609.1 253772778 8156265 complement(1434050..1435591) 1 NC_012947.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: sbc:SbBS512_E2674 C4-dicarboxylate anaerobic carrier protein; hypothetical protein 1435591 8156265 ECBD_1361 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035609.1 1434050 R 866768 CDS YP_003035610.1 253772779 8156266 complement(1435760..1437904) 1 NC_012947.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 1437904 8156266 ECBD_1362 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate acetyltransferase YP_003035610.1 1435760 R 866768 CDS YP_003035611.1 253772780 8156267 complement(1437979..1439181) 1 NC_012947.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1439181 8156267 ECBD_1363 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetate kinase YP_003035611.1 1437979 R 866768 CDS YP_003035612.1 253772781 8156268 1439520..1439975 1 NC_012947.1 PFAM: protein of unknown function DUF412; KEGG: sdy:SDY_2491 hypothetical protein; hypothetical protein 1439975 8156268 ECBD_1364 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035612.1 1439520 D 866768 CDS YP_003035613.1 253772782 8156269 1440058..1440552 1 NC_012947.1 PFAM: YfbU family protein; KEGG: ssn:SSON_2351 hypothetical protein; hypothetical protein 1440552 8156269 ECBD_1365 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035613.1 1440058 D 866768 CDS YP_003035614.1 253772783 8156270 1440563..1441213 1 NC_012947.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: elf:LF82_3055 phosphatase YfbT; phosphatase 1441213 8156270 ECBD_1366 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphatase YP_003035614.1 1440563 D 866768 CDS YP_003035615.1 253772784 8156271 1441300..1443132 1 NC_012947.1 PFAM: citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: ssn:SSON_2349 transporter; citrate transporter 1443132 8156271 ECBD_1367 Escherichia coli 'BL21-Gold(DE3)pLysS AG' citrate transporter YP_003035615.1 1441300 D 866768 CDS YP_003035616.1 253772785 8156272 complement(1443191..1443790) 1 NC_012947.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; hypothetical protein 1443790 8156272 ECBD_1368 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035616.1 1443191 R 866768 CDS YP_003035617.1 253772786 8156273 complement(1443874..1445091) 1 NC_012947.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 1445091 8156273 ECBD_1369 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminotransferase AlaT YP_003035617.1 1443874 R 866768 CDS YP_003035618.1 253772787 8156274 complement(1445517..1445771) 1 NC_012947.1 hypothetical protein 1445771 8156274 ECBD_1370 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035618.1 1445517 R 866768 CDS YP_003035619.1 253772788 8156275 1446011..1446949 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: elf:LF82_1233 HTH-type transcriptional regulator LrhA; LysR family transcriptional regulator 1446949 8156275 ECBD_1371 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003035619.1 1446011 D 866768 CDS YP_003035620.1 253772789 8156276 complement(1447153..1447317) 1 NC_012947.1 hypothetical protein 1447317 8156276 ECBD_1372 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035620.1 1447153 R 866768 CDS YP_003035621.1 253772790 8156277 1447580..1448023 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 1448023 8156277 ECBD_1373 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit A YP_003035621.1 1447580 D 866768 CDS YP_003035622.1 253772791 8156278 1448039..1448701 1 NC_012947.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1448701 8156278 ECBD_1374 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit B YP_003035622.1 1448039 D 866768 CDS YP_003035623.1 253772792 8156279 1448795..1450597 1 NC_012947.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 1450597 8156279 ECBD_1375 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_003035623.1 1448795 D 866768 CDS YP_003035624.1 253772793 8156280 1450600..1451100 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1451100 8156280 ECBD_1376 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit E YP_003035624.1 1450600 D 866768 CDS YP_003035625.1 253772794 8156281 1451097..1452434 1 NC_012947.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1452434 8156281 ECBD_1377 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase I subunit F YP_003035625.1 1451097 D 866768 CDS YP_003035626.1 253772795 8156282 1452487..1455213 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1455213 8156282 ECBD_1378 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit G YP_003035626.1 1452487 D 866768 CDS YP_003035627.1 253772796 8156283 1455210..1456187 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1456187 8156283 ECBD_1379 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit H YP_003035627.1 1455210 D 866768 CDS YP_003035628.1 253772797 8156284 1456202..1456744 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1456744 8156284 ECBD_1380 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit I YP_003035628.1 1456202 D 866768 CDS YP_003035629.1 253772798 8156285 1456756..1457310 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1457310 8156285 ECBD_1381 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit J YP_003035629.1 1456756 D 866768 CDS YP_003035630.1 253772799 8156286 1457307..1457609 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1457609 8156286 ECBD_1382 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit K YP_003035630.1 1457307 D 866768 CDS YP_003035631.1 253772800 8156287 1457606..1459447 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1459447 8156287 ECBD_1383 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit L YP_003035631.1 1457606 D 866768 CDS YP_003035632.1 253772801 8156288 1459678..1461207 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1461207 8156288 ECBD_1384 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit M YP_003035632.1 1459678 D 866768 CDS YP_003035633.1 253772802 8156289 1461214..1462671 1 NC_012947.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1462671 8156289 ECBD_1385 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH dehydrogenase subunit N YP_003035633.1 1461214 D 866768 CDS YP_003035634.1 253772803 8156290 complement(1462739..1463578) 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: bcj:BCAS0612 integrase; Integrase catalytic region 1463578 8156290 ECBD_1386 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003035634.1 1462739 R 866768 CDS YP_003035635.1 253772804 8156291 complement(1463575..1464096) 1 NC_012947.1 KEGG: pnu:Pnuc_1431 ISPsy8, transposase OrfA; ISPsy8, transposase OrfA 1464096 8156291 ECBD_1387 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ISPsy8, transposase OrfA YP_003035635.1 1463575 R 866768 CDS YP_003035636.1 253772805 8156292 complement(1464183..1464686) 1 NC_012947.1 PFAM: Domain of unknown function DUF1877; KEGG: sdy:SDY_2471 hypothetical protein; hypothetical protein 1464686 8156292 ECBD_1388 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035636.1 1464183 R 866768 CDS YP_003035637.1 253772806 8156293 complement(1465806..1467014) 1 NC_012947.1 ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; deubiquitinase 1467014 8156293 ECBD_1389 Escherichia coli 'BL21-Gold(DE3)pLysS AG' deubiquitinase YP_003035637.1 1465806 R 866768 CDS YP_003035638.1 253772807 8156294 complement(1467205..1468122) 1 NC_012947.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1468122 8156294 ECBD_1390 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease Z YP_003035638.1 1467205 R 866768 CDS YP_003035639.1 253772808 8156295 1468187..1468648 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfv:SFV_2338 hypothetical protein; hypothetical protein 1468648 8156295 ECBD_1391 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035639.1 1468187 D 866768 CDS YP_003035640.1 253772809 8156296 1468703..1469008 1 NC_012947.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_2462 hypothetical protein; hypothetical protein 1469008 8156296 ECBD_1392 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035640.1 1468703 D 866768 CDS YP_003035641.1 253772810 8156297 1469087..1470382 1 NC_012947.1 TIGRFAM: isochorismate synthase; PFAM: chorismate binding-like; KEGG: sfx:S2478 menaquinone-specific isochorismate synthase; isochorismate synthase 1470382 8156297 ECBD_1393 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isochorismate synthase YP_003035641.1 1469087 D 866768 CDS YP_003035642.1 253772811 8156298 1470471..1472141 1 NC_012947.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1472141 8156298 ECBD_1394 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_003035642.1 1470471 D 866768 CDS YP_003035643.1 253772812 8156299 1472138..1472896 1 NC_012947.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 1472896 8156299 ECBD_1395 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyl-CoA thioester hydrolase YfbB YP_003035643.1 1472138 D 866768 CDS YP_003035644.1 253772813 8156300 1472911..1473768 1 NC_012947.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1473768 8156300 ECBD_1396 Escherichia coli 'BL21-Gold(DE3)pLysS AG' naphthoate synthase YP_003035644.1 1472911 D 866768 CDS YP_003035645.1 253772814 8156301 1473768..1474730 1 NC_012947.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 1474730 8156301 ECBD_1397 Escherichia coli 'BL21-Gold(DE3)pLysS AG' O-succinylbenzoate synthase YP_003035645.1 1473768 D 866768 CDS YP_003035646.1 253772815 8156302 1474727..1476082 1 NC_012947.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sdy:SDY_2456 O-succinylbenzoic acid--CoA ligase; O-succinylbenzoic acid--CoA ligase 1476082 8156302 ECBD_1398 Escherichia coli 'BL21-Gold(DE3)pLysS AG' O-succinylbenzoic acid--CoA ligase YP_003035646.1 1474727 D 866768 CDS YP_003035647.1 253772816 8156303 1476192..1476458 1 NC_012947.1 KEGG: ssn:SSON_2320 polymyxin resistance protein B; polymyxin resistance protein B 1476458 8156303 ECBD_1399 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polymyxin resistance protein B YP_003035647.1 1476192 D 866768 CDS YP_003035648.1 253772817 8156304 complement(1476452..1476838) 1 NC_012947.1 KEGG: ssn:SSON_2319 hypothetical protein; hypothetical protein 1476838 8156304 ECBD_1400 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035648.1 1476452 R 866768 CDS YP_003035649.1 253772818 8156305 complement(1476838..1477173) 1 NC_012947.1 PFAM: small multidrug resistance protein; KEGG: sbc:SbBS512_E2634 multidrug resistance protein, SMR family; small multidrug resistance protein 1477173 8156305 ECBD_1401 Escherichia coli 'BL21-Gold(DE3)pLysS AG' small multidrug resistance protein YP_003035649.1 1476838 R 866768 CDS YP_003035650.1 253772819 8156306 complement(1477170..1478822) 1 NC_012947.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 1478822 arnT 8156306 arnT Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-amino-4-deoxy-L-arabinose transferase YP_003035650.1 1477170 R 866768 CDS YP_003035651.1 253772820 8156307 complement(1478822..1479712) 1 NC_012947.1 PFAM: polysaccharide deacetylase; KEGG: ssn:SSON_2317 hypothetical protein; polysaccharide deacetylase 1479712 8156307 ECBD_1403 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polysaccharide deacetylase YP_003035651.1 1478822 R 866768 CDS YP_003035652.1 253772821 8156308 complement(1479709..1481691) 1 NC_012947.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 1481691 8156308 ECBD_1404 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_003035652.1 1479709 R 866768 CDS YP_003035653.1 253772822 8156309 complement(1481691..1482659) 1 NC_012947.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 1482659 8156309 ECBD_1405 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_003035653.1 1481691 R 866768 CDS YP_003035654.1 253772823 8156310 complement(1482663..1483802) 1 NC_012947.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 1483802 8156310 ECBD_1406 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_003035654.1 1482663 R 866768 CDS YP_003035655.1 253772824 8156311 1484110..1484712 1 NC_012947.1 PFAM: phosphoglycerate mutase; KEGG: ssn:SSON_2313 protein induced by aluminum; phosphoglycerate mutase 1484712 8156311 ECBD_1407 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglycerate mutase YP_003035655.1 1484110 D 866768 CDS YP_003035656.1 253772825 8156312 complement(1484751..1485176) 1 NC_012947.1 PFAM: NUDIX hydrolase; KEGG: elf:LF82_1535 NUDIX hydrolase YfaO; NUDIX hydrolase 1485176 8156312 ECBD_1408 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NUDIX hydrolase YP_003035656.1 1484751 R 866768 CDS YP_003035657.1 253772826 8156313 1485455..1485997 1 NC_012947.1 PFAM: YfaZ family protein; YfaZ family protein 1485997 8156313 ECBD_1409 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YfaZ family protein YP_003035657.1 1485455 D 866768 CDS YP_003035658.1 253772827 8156314 1486097..1487299 1 NC_012947.1 TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis protein; PFAM: molybdopterin binding domain; KEGG: sfx:S2461 competence damage-inducible protein A; competence damage-inducible protein A 1487299 8156314 ECBD_1410 Escherichia coli 'BL21-Gold(DE3)pLysS AG' competence damage-inducible protein A YP_003035658.1 1486097 D 866768 CDS YP_003035659.1 253772828 8156315 1487519..1488301 1 NC_012947.1 PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: ssn:SSON_2309 regulator; transcriptional regulator, IclR family 1488301 8156315 ECBD_1411 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator, IclR family YP_003035659.1 1487519 D 866768 CDS YP_003035660.1 253772829 8156316 1488316..1489521 1 NC_012947.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sbo:SBO_2047 racemase; mandelate racemase/muconate lactonizing protein 1489521 8156316 ECBD_1412 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mandelate racemase/muconate lactonizing protein YP_003035660.1 1488316 D 866768 CDS YP_003035661.1 253772830 8156317 1489578..1490867 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_2048 transporter; major facilitator superfamily MFS_1 1490867 8156317 ECBD_1413 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003035661.1 1489578 D 866768 CDS YP_003035662.1 253772831 8156318 1490885..1491688 1 NC_012947.1 PFAM: HpcH/HpaI aldolase; KEGG: elf:LF82_3041 uncharacterized protein YfaU; aldolase 1491688 8156318 ECBD_1414 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldolase YP_003035662.1 1490885 D 866768 CDS YP_003035663.1 253772832 8156319 complement(1491729..1492631) 1 NC_012947.1 PFAM: transposase YhgA family protein; KEGG: sbc:SbBS512_E2627 hypothetical protein; hypothetical protein 1492631 8156319 ECBD_1415 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035663.1 1491729 R 866768 CDS YP_003035664.1 253772833 8156320 complement(1492674..1492799) 1 NC_012947.1 KEGG: sbc:SbBS512_E2626 hypothetical protein; hypothetical protein 1492799 8156320 ECBD_1416 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035664.1 1492674 R 866768 CDS YP_003035665.1 253772834 8156321 complement(1492824..1494014) 1 NC_012947.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 1494014 glpC 8156321 glpC Escherichia coli 'BL21-Gold(DE3)pLysS AG' sn-glycerol-3-phosphate dehydrogenase subunit C YP_003035665.1 1492824 R 866768 CDS YP_003035666.1 253772835 8156322 complement(1494011..1495270) 1 NC_012947.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 1495270 8156322 ECBD_1418 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_003035666.1 1494011 R 866768 CDS YP_003035667.1 253772836 8156323 complement(1495260..1496888) 1 NC_012947.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 1496888 glpA 8156323 glpA Escherichia coli 'BL21-Gold(DE3)pLysS AG' sn-glycerol-3-phosphate dehydrogenase subunit A YP_003035667.1 1495260 R 866768 CDS YP_003035668.1 253772837 8156324 1497161..1498519 1 NC_012947.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 1498519 glpT 8156324 glpT Escherichia coli 'BL21-Gold(DE3)pLysS AG' sn-glycerol-3-phosphate transporter YP_003035668.1 1497161 D 866768 CDS YP_003035669.1 253772838 8156325 1498524..1499600 1 NC_012947.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 1499600 glpQ 8156325 glpQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerophosphodiester phosphodiesterase YP_003035669.1 1498524 D 866768 CDS YP_003035670.1 253772839 8156326 complement(1499642..1499848) 1 NC_012947.1 KEGG: sfx:S2453 hypothetical protein; hypothetical protein 1499848 8156326 ECBD_1422 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035670.1 1499642 R 866768 CDS YP_003035671.1 253772840 8156327 1500063..1500713 1 NC_012947.1 PFAM: lipopolysaccharide kinase; KEGG: sfv:SFV_2310 hypothetical protein; hypothetical protein 1500713 8156327 ECBD_1423 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035671.1 1500063 D 866768 CDS YP_003035672.1 253772841 8156328 complement(1500767..1501021) 1 NC_012947.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin YfaE 1501021 8156328 ECBD_1424 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2Fe-2S ferredoxin YfaE YP_003035672.1 1500767 R 866768 CDS YP_003035673.1 253772842 8156329 complement(1501021..1502151) 1 NC_012947.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 1502151 nrdB 8156329 nrdB Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleotide-diphosphate reductase subunit beta YP_003035673.1 1501021 R 866768 CDS YP_003035674.1 253772843 8156330 complement(1502297..1504582) 1 NC_012947.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1504582 8156330 ECBD_1426 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleotide-diphosphate reductase subunit alpha YP_003035674.1 1502297 R 866768 CDS YP_003035675.1 253772844 8156331 1505326..1509030 1 NC_012947.1 TIGRFAM: outer membrane autotransporter barrel domain protein; polymorphic outer membrane protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; polymorphic membrane protein Chlamydia; Pertactin; adhesin 1509030 8156331 ECBD_1427 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adhesin YP_003035675.1 1505326 D 866768 CDS YP_003035676.1 253772845 8156332 complement(1509158..1509880) 1 NC_012947.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1509880 8156332 ECBD_1428 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-demethylubiquinone-9 3-methyltransferase YP_003035676.1 1509158 R 866768 CDS YP_003035677.1 253772846 8156333 1510027..1512654 1 NC_012947.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1512654 8156333 ECBD_1429 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA gyrase subunit A YP_003035677.1 1510027 D 866768 CDS YP_003035678.1 253772847 8156334 1512803..1514491 1 NC_012947.1 KEGG: elf:LF82_3033 uncharacterized protein YfaA; hypothetical protein 1514491 8156334 ECBD_1430 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035678.1 1512803 D 866768 CDS YP_003035679.1 253772848 8156335 1514488..1515111 1 NC_012947.1 PFAM: protein of unknown function DUF1175; hypothetical protein 1515111 8156335 ECBD_1431 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035679.1 1514488 D 866768 CDS YP_003035680.1 253772849 8156336 1515045..1519649 1 NC_012947.1 PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin 2; alpha-2-macroglobulin 1519649 8156336 ECBD_1432 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha-2-macroglobulin YP_003035680.1 1515045 D 866768 CDS YP_003035681.1 253772850 8157342 1519650..1521299 1 NC_012947.1 KEGG: ssn:SSON_2285 hypothetical protein; hypothetical protein 1521299 8157342 ECBD_1433 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035681.1 1519650 D 866768 CDS YP_003035682.1 253772851 8159969 1521304..1522080 1 NC_012947.1 KEGG: sfv:SFV_2294 hypothetical protein; hypothetical protein 1522080 8159969 ECBD_1434 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035682.1 1521304 D 866768 CDS YP_003035683.1 253772852 8159970 complement(1522154..1523338) 1 NC_012947.1 KEGG: ssn:SSON_2283 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase 1523338 8159970 ECBD_1435 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl-CoA acetyltransferase YP_003035683.1 1522154 R 866768 CDS YP_003035684.1 253772853 8159971 complement(1523369..1524691) 1 NC_012947.1 PFAM: short chain fatty acid transporter; KEGG: elf:LF82_0189 short-chain fatty acids transporter; short chain fatty acid transporter 1524691 8159971 ECBD_1436 Escherichia coli 'BL21-Gold(DE3)pLysS AG' short chain fatty acid transporter YP_003035684.1 1523369 R 866768 CDS YP_003035685.1 253772854 8159972 complement(1524688..1525338) 1 NC_012947.1 KEGG: elf:LF82_0185 acetate CoA-transferase subunit beta; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase, B subunit 1525338 8159972 ECBD_1437 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-oxoacid CoA-transferase, B subunit YP_003035685.1 1524688 R 866768 CDS YP_003035686.1 253772855 8159973 complement(1525338..1526000) 1 NC_012947.1 KEGG: ssn:SSON_2280 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; TIGRFAM: 3-oxoacid CoA-transferase, subunit alpha; PFAM: coenzyme A transferase; acetyl-CoA:acetoacetyl-CoA transferase subunit alpha 1526000 8159973 ECBD_1438 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl-CoA:acetoacetyl-CoA transferase subunit alpha YP_003035686.1 1525338 R 866768 CDS YP_003035687.1 253772856 8159974 complement(1526196..1527581) 1 NC_012947.1 with AtoS is a two-component regulatory system involved in the transcriptional regulation of the ato genes for acetoacetate metabolism; acetoacetate metabolism regulatory protein AtoC 1527581 8159974 ECBD_1439 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetoacetate metabolism regulatory protein AtoC YP_003035687.1 1526196 R 866768 CDS YP_003035688.1 253772857 8159975 complement(1527578..1529404) 1 NC_012947.1 with AtoC is a member of a two-component regulatory system involved in the transcriptional regulation of the ato genes for acetoacetate metabolism; sensory histidine kinase AtoS 1529404 8159975 ECBD_1440 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensory histidine kinase AtoS YP_003035688.1 1527578 R 866768 CDS YP_003035689.1 253772858 8159976 1529571..1532420 1 NC_012947.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: ssn:SSON_2277 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 1532420 8159976 ECBD_1441 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_003035689.1 1529571 D 866768 CDS YP_003035690.1 253772859 8159977 1532695..1532970 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 1532970 8159977 ECBD_1442 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003035690.1 1532695 D 866768 CDS YP_003035691.1 253772860 8159978 1532889..1533392 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 1533392 8159978 ECBD_1443 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003035691.1 1532889 D 866768 CDS YP_003035692.1 253772861 8159980 1534509..1535564 1 NC_012947.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE 1535564 8159980 ECBD_1445 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine biosynthesis lipoprotein ApbE YP_003035692.1 1534509 D 866768 CDS YP_003035693.1 253772862 8159981 1535638..1536702 1 NC_012947.1 KEGG: sbo:SBO_2094 O6-methylguanine-DNA methyltransferase; transcription activator/repressor; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain protein; helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; SMART: helix-turn-helix- domain containing protein AraC type; AraC family transcriptional regulator 1536702 8159981 ECBD_1446 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003035693.1 1535638 D 866768 CDS YP_003035694.1 253772863 8159982 1536702..1537352 1 NC_012947.1 TIGRFAM: alkylated DNA repair protein AlkB; PFAM: 2OG-Fe(II) oxygenase; KEGG: sbc:SbBS512_E0728 alkylated DNA repair protein AlkB; alkylated DNA repair protein AlkB 1537352 8159982 ECBD_1447 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alkylated DNA repair protein AlkB YP_003035694.1 1536702 D 866768 CDS YP_003035695.1 253772864 8159983 1537428..1539071 1 NC_012947.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane component/ATP-binding component 1539071 8159983 ECBD_1448 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug transporter membrane component/ATP-binding component YP_003035695.1 1537428 D 866768 CDS YP_003035696.1 253772865 8159984 1539289..1540935 1 NC_012947.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1540935 8159984 ECBD_1449 Escherichia coli 'BL21-Gold(DE3)pLysS AG' malate:quinone oxidoreductase YP_003035696.1 1539289 D 866768 CDS YP_003035697.1 253772866 8159985 complement(1541765..1542253) 1 NC_012947.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 1542253 8159985 ECBD_1450 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ecotin YP_003035697.1 1541765 R 866768 CDS YP_003035698.1 253772867 8159986 complement(1542388..1542552) 1 NC_012947.1 KEGG: sbc:SbBS512_E0732 hypothetical protein; hypothetical protein 1542552 8159986 ECBD_1451 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035698.1 1542388 R 866768 CDS YP_003035699.1 253772868 8159987 1542661..1543155 1 NC_012947.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein 1543155 8159987 ECBD_1452 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferredoxin-type protein YP_003035699.1 1542661 D 866768 CDS YP_003035700.1 253772869 8159988 1543145..1543408 1 NC_012947.1 PFAM: NapD family protein; KEGG: ssn:SSON_2265 assembly protein for periplasmic nitrate reductase; assembly protein for periplasmic nitrate reductase 1543408 8159988 ECBD_1453 Escherichia coli 'BL21-Gold(DE3)pLysS AG' assembly protein for periplasmic nitrate reductase YP_003035700.1 1543145 D 866768 CDS YP_003035701.1 253772870 8159989 1543405..1545891 1 NC_012947.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 1545891 8159989 ECBD_1454 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate reductase catalytic subunit YP_003035701.1 1543405 D 866768 CDS YP_003035702.1 253772871 8159990 1545898..1546593 1 NC_012947.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 1546593 napG 8159990 napG Escherichia coli 'BL21-Gold(DE3)pLysS AG' quinol dehydrogenase periplasmic component YP_003035702.1 1545898 D 866768 CDS YP_003035703.1 253772872 8159991 1546580..1547443 1 NC_012947.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 1547443 napH 8159991 napH Escherichia coli 'BL21-Gold(DE3)pLysS AG' quinol dehydrogenase membrane component YP_003035703.1 1546580 D 866768 CDS YP_003035704.1 253772873 8159992 1547440..1547889 1 NC_012947.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome C subunit 1547889 napB 8159992 napB Escherichia coli 'BL21-Gold(DE3)pLysS AG' citrate reductase cytochrome C subunit YP_003035704.1 1547440 D 866768 CDS YP_003035705.1 253772874 8159993 1547899..1548501 1 NC_012947.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome C protein NapC 1548501 8159993 ECBD_1458 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C protein NapC YP_003035705.1 1547899 D 866768 CDS YP_003035706.1 253772875 8159994 1548520..1549137 1 NC_012947.1 ATP-binding protein; required for proper cytochrome C maturation; cytochrome C biogenesis protein CcmA 1549137 8159994 ECBD_1459 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C biogenesis protein CcmA YP_003035706.1 1548520 D 866768 CDS YP_003035707.1 253772876 8159995 1549134..1549796 1 NC_012947.1 PFAM: cytochrome C biogenesis protein CcmB; KEGG: sdy:SDY_0878 heme exporter protein B; cytochrome C biogenesis protein CcmB 1549796 8159995 ECBD_1460 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C biogenesis protein CcmB YP_003035707.1 1549134 D 866768 CDS YP_003035708.1 253772877 8159996 1549838..1550575 1 NC_012947.1 PFAM: cytochrome C assembly protein; KEGG: sdy:SDY_0879 heme exporter protein C; cytochrome C assembly protein 1550575 8159996 ECBD_1461 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C assembly protein YP_003035708.1 1549838 D 866768 CDS YP_003035709.1 253772878 8159997 1550572..1550781 1 NC_012947.1 PFAM: Heme exporter protein D (CcmD); KEGG: sdy:SDY_0880 heme exporter protein C; Heme exporter protein D (CcmD) 1550781 8159997 ECBD_1462 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Heme exporter protein D (CcmD) YP_003035709.1 1550572 D 866768 CDS YP_003035710.1 253772879 8159998 1550778..1551257 1 NC_012947.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome C maturation system; periplasmic protein anchored to the inner membrane; cytochrome C biogenesis protein CcmE 1551257 8159998 ECBD_1463 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C biogenesis protein CcmE YP_003035710.1 1550778 D 866768 CDS YP_003035711.1 253772880 8159999 1551254..1553197 1 NC_012947.1 PFAM: cytochrome C assembly protein; KEGG: sbo:SBO_2111 cytochrome C biogenesis protein; cytochrome C assembly protein 1553197 8159999 ECBD_1464 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C assembly protein YP_003035711.1 1551254 D 866768 CDS YP_003035712.1 253772881 8160000 1553194..1553751 1 NC_012947.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: sbc:SbBS512_E0746 thiol:disulfide interchange protein DsbE; redoxin 1553751 8160000 ECBD_1465 Escherichia coli 'BL21-Gold(DE3)pLysS AG' redoxin YP_003035712.1 1553194 D 866768 CDS YP_003035713.1 253772882 8160001 1553748..1554800 1 NC_012947.1 PFAM: cytochrome C biogenesis protein; KEGG: sfv:SFV_2270 subunit of heme lyase; cytochrome C biogenesis protein 1554800 8160001 ECBD_1466 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C biogenesis protein YP_003035713.1 1553748 D 866768 CDS YP_003035714.1 253772883 8160002 complement(1555011..1555658) 1 NC_012947.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 1555658 8160002 ECBD_1467 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator NarP YP_003035714.1 1555011 R 866768 CDS YP_003035715.1 253772884 8160003 1555978..1558569 1 NC_012947.1 PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sfv:SFV_2268 ATP-binding component of a transport system; Pertactin 1558569 8160003 ECBD_1468 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Pertactin YP_003035715.1 1555978 D 866768 CDS YP_003035716.1 253772885 8160005 complement(1558823..1560583) 1 NC_012947.1 PFAM: sulfatase; KEGG: elf:LF82_3032 inner membrane protein YejM; sulfatase 1560583 8160005 ECBD_1469 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfatase YP_003035716.1 1558823 R 866768 CDS YP_003035717.1 253772886 8160006 complement(1560603..1560830) 1 NC_012947.1 PFAM: protein of unknown function DUF1414; KEGG: sbc:SbBS512_E0770 hypothetical protein; hypothetical protein 1560830 8160006 ECBD_1470 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035717.1 1560603 R 866768 CDS YP_003035718.1 253772887 8160007 1561012..1562019 1 NC_012947.1 PFAM: 37kDa nucleoid-associated protein; KEGG: sfv:SFV_2264 nucleoid-associated protein NdpA; nucleoid-associated protein NdpA 1562019 8160007 ECBD_1471 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoid-associated protein NdpA YP_003035718.1 1561012 D 866768 CDS YP_003035719.1 253772888 8160008 complement(1562158..1562442) 1 NC_012947.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1562442 8160008 ECBD_1472 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L25 YP_003035719.1 1562158 R 866768 CDS YP_003035720.1 253772889 8160009 complement(1562567..1564327) 1 NC_012947.1 PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicase ; helicase; KEGG: sdy:SDY_0895 ATP-dependent helicase; type III restriction protein res subunit 1564327 8160009 ECBD_1473 Escherichia coli 'BL21-Gold(DE3)pLysS AG' type III restriction protein res subunit YP_003035720.1 1562567 R 866768 CDS YP_003035721.1 253772890 8160010 1564476..1565171 1 NC_012947.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 1565171 8160010 ECBD_1474 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 16S rRNA pseudouridylate synthase A YP_003035721.1 1564476 D 866768 CDS YP_003035722.1 253772891 8160011 1565199..1566389 1 NC_012947.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system 1566389 8160011 ECBD_1475 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bicyclomycin/multidrug efflux system YP_003035722.1 1565199 D 866768 CDS YP_003035723.1 253772892 8160012 1566722..1567066 1 NC_012947.1 KEGG: sfv:SFV_2259 hypothetical protein; hypothetical protein 1567066 8160012 ECBD_1476 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035723.1 1566722 D 866768 CDS YP_003035724.1 253772893 8160013 complement(1567070..1568659) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sdy:SDY_0899 ATP-binding component of a transporter; ABC transporter 1568659 8160013 ECBD_1477 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003035724.1 1567070 R 866768 CDS YP_003035725.1 253772894 8160014 complement(1568661..1569686) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sbo:SBO_2145 transporter permease protein; binding-protein-dependent transporters inner membrane component 1569686 8160014 ECBD_1478 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003035725.1 1568661 R 866768 CDS YP_003035726.1 253772895 8160015 complement(1569686..1570780) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ssn:SSON_2234 transporter permease protein; binding-protein-dependent transporters inner membrane component 1570780 8160015 ECBD_1479 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003035726.1 1569686 R 866768 CDS YP_003035727.1 253772896 8160016 complement(1570781..1572595) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 5; extracellular solute-binding protein family 5 1572595 8160016 ECBD_1480 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 5 YP_003035727.1 1570781 R 866768 CDS YP_003035728.1 253772897 8160017 complement(1572677..1574233) 1 NC_012947.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: sbc:SbBS512_E0782 cyclic diguanylate phosphodiesterase; hypothetical protein 1574233 8160017 ECBD_1481 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035728.1 1572677 R 866768 CDS YP_003035729.1 253772898 8160018 complement(1574414..1574980) 1 NC_012947.1 by similarity, Spr seems to have peptidase activity; involved in thermoresistance; outer membrane lipoprotein 1574980 spr 8160018 spr Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein YP_003035729.1 1574414 R 866768 CDS YP_003035730.1 253772899 8160019 complement(1575392..1576105) 1 NC_012947.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: ssn:SSON_2230 hypothetical protein; phosphoesterase PA-phosphatase related 1576105 8160019 ECBD_1483 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoesterase PA-phosphatase related YP_003035730.1 1575392 R 866768 CDS YP_003035731.1 253772900 8160020 complement(1576144..1577130) 1 NC_012947.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sbc:SbBS512_E0785 CobW/P47K family protein; cobalamin synthesis protein P47K 1577130 8160020 ECBD_1484 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cobalamin synthesis protein P47K YP_003035731.1 1576144 R 866768 CDS YP_003035732.1 253772901 8160021 complement(1577248..1578714) 1 NC_012947.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ssn:SSON_2228 oxidoreductase; mannitol dehydrogenase 1578714 8160021 ECBD_1485 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannitol dehydrogenase YP_003035732.1 1577248 R 866768 CDS YP_003035733.1 253772902 8160022 complement(1578937..1579509) 1 NC_012947.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 1579509 8160022 ECBD_1486 Escherichia coli 'BL21-Gold(DE3)pLysS AG' elongation factor P YP_003035733.1 1578937 R 866768 CDS YP_003035734.1 253772903 8160023 1579664..1579918 1 NC_012947.1 PFAM: protein of unknown function UPF0153; KEGG: elf:LF82_3023 UPF0153 protein YeiW; hypothetical protein 1579918 8160023 ECBD_1487 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035734.1 1579664 D 866768 CDS YP_003035735.1 253772904 8160024 complement(1579915..1581096) 1 NC_012947.1 TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; sugar efflux transporter 1581096 8160024 ECBD_1488 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar efflux transporter YP_003035735.1 1579915 R 866768 CDS YP_003035736.1 253772905 8160025 1581464..1582594 1 NC_012947.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 1582594 8160025 ECBD_1489 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_003035736.1 1581464 D 866768 CDS YP_003035737.1 253772906 8160026 1582594..1583532 1 NC_012947.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 1583532 fruK 8160026 fruK Escherichia coli 'BL21-Gold(DE3)pLysS AG' 1-phosphofructokinase YP_003035737.1 1582594 D 866768 CDS YP_003035738.1 253772907 8160027 1583549..1585240 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunits IIBC 1585240 8160027 ECBD_1491 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system fructose-specific transporter subunits IIBC YP_003035738.1 1583549 D 866768 CDS YP_003035739.1 253772908 8160028 1585664..1586605 1 NC_012947.1 PFAM: PfkB domain protein; KEGG: sfv:SFV_2241 hypothetical protein; hypothetical protein 1586605 8160028 ECBD_1492 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035739.1 1585664 D 866768 CDS YP_003035740.1 253772909 8160029 1586593..1587531 1 NC_012947.1 PFAM: indigoidine synthase A family protein; KEGG: sfv:SFV_2240 hypothetical protein; indigoidine synthase A family protein 1587531 8160029 ECBD_1493 Escherichia coli 'BL21-Gold(DE3)pLysS AG' indigoidine synthase A family protein YP_003035740.1 1586593 D 866768 CDS YP_003035741.1 253772910 8160030 1587625..1588875 1 NC_012947.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; nucleoside recognition domain protein; Na+ dependent nucleoside transporter; KEGG: sbc:SbBS512_E0801 nucleoside transporter NupC family; nucleoside transporter 1588875 8160030 ECBD_1494 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside transporter YP_003035741.1 1587625 D 866768 CDS YP_003035742.1 253772911 8160031 complement(1588946..1589644) 1 NC_012947.1 activator of nucleoside metabolism; DNA-binding transcriptional activator YeiL 1589644 8160031 ECBD_1495 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator YeiL YP_003035742.1 1588946 R 866768 CDS YP_003035743.1 253772912 8160032 1589774..1590715 1 NC_012947.1 Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively; ribonucleoside hydrolase 2 1590715 rihB 8160032 rihB Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleoside hydrolase 2 YP_003035743.1 1589774 D 866768 CDS YP_003035744.1 253772913 8160033 1590815..1592065 1 NC_012947.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; nucleoside recognition domain protein; Na+ dependent nucleoside transporter; KEGG: ssn:SSON_2217 transport system permease; nucleoside transporter 1592065 8160033 ECBD_1497 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside transporter YP_003035744.1 1590815 D 866768 CDS YP_003035745.1 253772914 8160034 complement(1592121..1593209) 1 NC_012947.1 PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E0806 kinase, PfkB family; hypothetical protein 1593209 8160034 ECBD_1498 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035745.1 1592121 R 866768 CDS YP_003035746.1 253772915 8160035 complement(1593212..1594069) 1 NC_012947.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1594069 8160035 ECBD_1499 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endonuclease IV YP_003035746.1 1593212 R 866768 CDS YP_003035747.1 253772916 8160036 complement(1594143..1595192) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sbo:SBO_2169 hypothetical protein; hypothetical protein 1595192 8160036 ECBD_1500 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035747.1 1594143 R 866768 CDS YP_003035748.1 253772917 8160037 1595291..1596172 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_2213 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 1596172 8160037 ECBD_1501 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003035748.1 1595291 D 866768 CDS YP_003035749.1 253772918 8160038 1596377..1597846 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2110 lysine transporter; lysine transporter 1597846 8160038 ECBD_1502 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysine transporter YP_003035749.1 1596377 D 866768 CDS YP_003035750.1 253772919 8160039 1598140..1600131 1 NC_012947.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor 1600131 8160039 ECBD_1503 Escherichia coli 'BL21-Gold(DE3)pLysS AG' colicin I receptor YP_003035750.1 1598140 D 866768 CDS YP_003035751.1 253772920 8160040 complement(1600163..1600999) 1 NC_012947.1 KEGG: sbc:SbBS512_E0812 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: esterase; S-formylglutathione hydrolase 1600999 8160040 ECBD_1504 Escherichia coli 'BL21-Gold(DE3)pLysS AG' S-formylglutathione hydrolase YP_003035751.1 1600163 R 866768 CDS YP_003035752.1 253772921 8160041 1601257..1601925 1 NC_012947.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1601925 folE 8160041 folE Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTP cyclohydrolase I YP_003035752.1 1601257 D 866768 CDS YP_003035753.1 253772922 8160042 1601942..1603099 1 NC_012947.1 PFAM: protein of unknown function DUF418; protein of unknown function DUF405; KEGG: sbc:SbBS512_E0814 hypothetical protein; hypothetical protein 1603099 8160042 ECBD_1506 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035753.1 1601942 D 866768 CDS YP_003035754.1 253772923 8160043 1603241..1604281 1 NC_012947.1 negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 1604281 8160043 ECBD_1507 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator GalS YP_003035754.1 1603241 D 866768 CDS YP_003035755.1 253772924 8160045 1605615..1607135 1 NC_012947.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 1607135 8160045 ECBD_1509 Escherichia coli 'BL21-Gold(DE3)pLysS AG' galactose/methyl galaxtoside transporter ATP-binding protein YP_003035755.1 1605615 D 866768 CDS YP_003035756.1 253772925 8160046 1607151..1608161 1 NC_012947.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane component 1608161 mglC 8160046 mglC Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-methylgalactoside transporter inner membrane component YP_003035756.1 1607151 D 866768 CDS YP_003035757.1 253772926 8160047 complement(1608404..1609639) 1 NC_012947.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 1609639 8160047 ECBD_1511 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydropyrimidine dehydrogenase YP_003035757.1 1608404 R 866768 CDS YP_003035758.1 253772927 8160048 complement(1609633..1610871) 1 NC_012947.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1610871 8160048 ECBD_1512 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase YP_003035758.1 1609633 R 866768 CDS YP_003035759.1 253772928 8160049 complement(1611065..1611304) 1 NC_012947.1 KEGG: sbc:SbBS512_E0826 hypothetical protein; hypothetical protein 1611304 8160049 ECBD_1513 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035759.1 1611065 R 866768 CDS YP_003035760.1 253772929 8159319 complement(1611307..1612026) 1 NC_012947.1 PFAM: protein of unknown function DUF218; KEGG: sfv:SFV_2219 hypothetical protein; hypothetical protein 1612026 8159319 ECBD_1514 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035760.1 1611307 R 866768 CDS YP_003035761.1 253772930 8157505 complement(1612176..1613060) 1 NC_012947.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1613060 8157505 ECBD_1515 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytidine deaminase YP_003035761.1 1612176 R 866768 CDS YP_003035762.1 253772931 8157506 complement(1613190..1613885) 1 NC_012947.1 PFAM: LrgB family protein; KEGG: sbc:SbBS512_E0829 LrgB family protein; hypothetical protein 1613885 8157506 ECBD_1516 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035762.1 1613190 R 866768 CDS YP_003035763.1 253772932 8157507 complement(1613882..1614280) 1 NC_012947.1 PFAM: LrgA family protein; KEGG: sbo:SBO_1000 hypothetical protein; hypothetical protein 1614280 8157507 ECBD_1517 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035763.1 1613882 R 866768 CDS YP_003035764.1 253772933 8157508 1614518..1615465 1 NC_012947.1 PFAM: dihydrouridine synthase; KEGG: elf:LF82_0533 tRNA-dihydrouridine synthase C; tRNA-dihydrouridine synthase C 1615465 8157508 ECBD_1518 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA-dihydrouridine synthase C YP_003035764.1 1614518 D 866768 CDS YP_003035765.1 253772934 8157510 1616145..1617581 1 NC_012947.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ 1617581 8157510 ECBD_1520 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug resistance outer membrane protein MdtQ YP_003035765.1 1616145 D 866768 CDS YP_003035766.1 253772935 8157511 1617634..1618395 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbc:SbBS512_E0834 3-oxoacyl-[acyl-carrier-protein] reductase; acetoin dehydrogenase 1618395 8157511 ECBD_1521 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetoin dehydrogenase YP_003035766.1 1617634 D 866768 CDS YP_003035767.1 253772936 8157512 complement(1618525..1619103) 1 NC_012947.1 PFAM: SNARE associated Golgi protein; KEGG: sbc:SbBS512_E0835 hypothetical protein; hypothetical protein 1619103 8157512 ECBD_1522 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035767.1 1618525 R 866768 CDS YP_003035768.1 253772937 8157513 1619273..1619860 1 NC_012947.1 PFAM: protein of unknown function DUF1282; KEGG: sbo:SBO_1009 hypothetical protein; hypothetical protein 1619860 8157513 ECBD_1523 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035768.1 1619273 D 866768 CDS YP_003035769.1 253772938 8157514 1620025..1620966 1 NC_012947.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 1620966 pbpG 8157514 pbpG Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanyl-D-alanine endopeptidase YP_003035769.1 1620025 D 866768 CDS YP_003035770.1 253772939 8157515 complement(1621004..1622719) 1 NC_012947.1 component of the membrane-bound D-lactate oxidase FAD-binding, NADH independent; D-lactate dehydrogenase 1622719 8157515 ECBD_1525 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-lactate dehydrogenase YP_003035770.1 1621004 R 866768 CDS YP_003035771.1 253772940 8157516 1622915..1625212 1 NC_012947.1 PFAM: glycoside hydrolase; KEGG: ssn:SSON_2189 beta-D-glucoside glucohydrolase, periplasmic; glycoside hydrolase 1625212 8157516 ECBD_1526 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase YP_003035771.1 1622915 D 866768 CDS YP_003035772.1 253772941 8157517 1625464..1626381 1 NC_012947.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: sbo:SBO_1013 transporter permease; glycine/betaine ABC transporter substrate-binding protein 1626381 8157517 ECBD_1527 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycine/betaine ABC transporter substrate-binding protein YP_003035772.1 1625464 D 866768 CDS YP_003035773.1 253772942 8157518 1626388..1627545 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sbo:SBO_1014 transporter permease protein; binding-protein-dependent transporters inner membrane component 1627545 8157518 ECBD_1528 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003035773.1 1626388 D 866768 CDS YP_003035774.1 253772943 8157519 1627538..1628464 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: elf:LF82_3005 uncharacterized ABC transporter ATP-binding protein; ABC transporter 1628464 8157519 ECBD_1529 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003035774.1 1627538 D 866768 CDS YP_003035775.1 253772944 8157520 1628469..1629200 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sbc:SbBS512_E0845 ABC transporter quaternary amine uptake (QAT) family, permease; binding-protein-dependent transporters inner membrane component 1629200 8157520 ECBD_1530 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003035775.1 1628469 D 866768 CDS YP_003035776.1 253772945 8157521 complement(1629181..1629288) 1 NC_012947.1 KEGG: sdy:SDY_2161 hypothetical protein; hypothetical protein 1629288 8157521 ECBD_1531 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035776.1 1629181 R 866768 CDS YP_003035777.1 253772946 8157522 complement(1629348..1630079) 1 NC_012947.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: elf:LF82_1354 HTH-type transcriptional regulator MlrA; MerR family transcriptional regulator 1630079 8157522 ECBD_1532 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MerR family transcriptional regulator YP_003035777.1 1629348 R 866768 CDS YP_003035778.1 253772947 8157523 1630301..1631986 1 NC_012947.1 KEGG: sfx:S2325 2-component sensor protein; PFAM: histidine kinase internal region; GAF domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; signal transduction histidine kinase, LytS 1631986 8157523 ECBD_1533 Escherichia coli 'BL21-Gold(DE3)pLysS AG' signal transduction histidine kinase, LytS YP_003035778.1 1630301 D 866768 CDS YP_003035779.1 253772948 8157524 1631983..1632702 1 NC_012947.1 unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 1632702 8157524 ECBD_1534 Escherichia coli 'BL21-Gold(DE3)pLysS AG' two-component response-regulatory protein YehT YP_003035779.1 1631983 D 866768 CDS YP_003035780.1 253772949 8157525 1632749..1633219 1 NC_012947.1 PFAM: protein of unknown function DUF1456; KEGG: ssn:SSON_2170 hypothetical protein; hypothetical protein 1633219 8157525 ECBD_1535 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035780.1 1632749 D 866768 CDS YP_003035781.1 253772950 8157526 complement(1633260..1633721) 1 NC_012947.1 PFAM: protein of unknown function DUF1307; KEGG: elf:LF82_3000 uncharacterized lipoprotein YehR; hypothetical protein 1633721 8157526 ECBD_1536 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035781.1 1633260 R 866768 CDS YP_003035782.1 253772951 8157527 complement(1633846..1635846) 1 NC_012947.1 PFAM: zinc finger SWIM domain protein; KEGG: ssn:SSON_2168 hypothetical protein; zinc finger SWIM domain protein 1635846 8157527 ECBD_1537 Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc finger SWIM domain protein YP_003035782.1 1633846 R 866768 CDS YP_003035783.1 253772952 8157528 complement(1635843..1636979) 1 NC_012947.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor A; KEGG: sbo:SBO_0944 hypothetical protein; VWA containing CoxE family protein 1636979 8157528 ECBD_1538 Escherichia coli 'BL21-Gold(DE3)pLysS AG' VWA containing CoxE family protein YP_003035783.1 1635843 R 866768 CDS YP_003035784.1 253772953 8157529 complement(1636972..1639251) 1 NC_012947.1 KEGG: sfl:SF2189 hypothetical protein; hypothetical protein 1639251 8157529 ECBD_1539 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035784.1 1636972 R 866768 CDS YP_003035785.1 253772954 8157530 complement(1639262..1640350) 1 NC_012947.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfx:S2313 hypothetical protein; ATPase associated with various cellular activities AAA_5 1640350 8157530 ECBD_1540 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATPase associated with various cellular activities AAA_5 YP_003035785.1 1639262 R 866768 CDS YP_003035786.1 253772955 8157531 complement(1640657..1640974) 1 NC_012947.1 KEGG: efe:EFER_2203 hypothetical protein; hypothetical protein 1640974 8157531 ECBD_1541 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035786.1 1640657 R 866768 CDS YP_003035787.1 253772956 8157532 complement(1641035..1644667) 1 NC_012947.1 hypothetical protein 1644667 8157532 ECBD_1542 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035787.1 1641035 R 866768 CDS YP_003035788.1 253772957 8157533 complement(1644677..1648471) 1 NC_012947.1 PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: efe:EFER_2201 molybdate metabolism regulator (MolR); WGR domain protein 1648471 8157533 ECBD_1543 Escherichia coli 'BL21-Gold(DE3)pLysS AG' WGR domain protein YP_003035788.1 1644677 R 866768 CDS YP_003035789.1 253772958 8157534 complement(1648612..1650645) 1 NC_012947.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1650645 metG 8157534 metG Escherichia coli 'BL21-Gold(DE3)pLysS AG' methionyl-tRNA synthetase YP_003035789.1 1648612 R 866768 CDS YP_003035790.1 253772959 8157535 1650777..1651886 1 NC_012947.1 KEGG: sbc:SbBS512_E0855 mrp protein; ATPase 1651886 8157535 ECBD_1545 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATPase YP_003035790.1 1650777 D 866768 CDS YP_003035791.1 253772960 8157536 1652366..1652641 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 1652641 8157536 ECBD_1546 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003035791.1 1652366 D 866768 CDS YP_003035792.1 253772961 8157537 1652560..1653063 1 NC_012947.1 PFAM: IS1 transposase; KEGG: hdu:HD1970 insertion element IS1 1/5/6 protein InsB; IS1 transposase 1653063 8157537 ECBD_1547 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003035792.1 1652560 D 866768 CDS YP_003035793.1 253772962 8157538 1654512..1654703 1 NC_012947.1 hypothetical protein 1654703 8157538 ECBD_1548 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035793.1 1654512 D 866768 CDS YP_003035794.1 253772963 8157539 1654773..1654937 1 NC_012947.1 hypothetical protein 1654937 8157539 ECBD_1549 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035794.1 1654773 D 866768 CDS YP_003035795.1 253772964 8157540 1654897..1655562 1 NC_012947.1 hypothetical protein 1655562 8157540 ECBD_1550 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035795.1 1654897 D 866768 CDS YP_003035796.1 253772965 8157541 complement(1655666..1656097) 1 NC_012947.1 KEGG: bvi:Bcep1808_7334 hypothetical protein; hypothetical protein 1656097 8157541 ECBD_1551 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035796.1 1655666 R 866768 CDS YP_003035797.1 253772966 8157542 complement(1656144..1656389) 1 NC_012947.1 KEGG: noc:Noc_3027 hypothetical protein; hypothetical protein 1656389 8157542 ECBD_1552 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035797.1 1656144 R 866768 CDS YP_003035798.1 253772967 8157543 1656712..1657500 1 NC_012947.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 1657500 8157543 ECBD_1553 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydroxyethylthiazole kinase YP_003035798.1 1656712 D 866768 CDS YP_003035799.1 253772968 8157544 1657497..1658297 1 NC_012947.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 1658297 8157544 ECBD_1554 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphomethylpyrimidine kinase YP_003035799.1 1657497 D 866768 CDS YP_003035800.1 253772969 8157545 1658362..1659180 1 NC_012947.1 PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: ssn:SSON_2150 hypothetical protein; glycoside hydrolase family 25 1659180 8157545 ECBD_1555 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase family 25 YP_003035800.1 1658362 D 866768 CDS YP_003035801.1 253772970 8157546 1659232..1659978 1 NC_012947.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sdy:SDY_2274 transcriptional regulator; GntR family transcriptional regulator 1659978 8157546 ECBD_1556 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GntR family transcriptional regulator YP_003035801.1 1659232 D 866768 CDS YP_003035802.1 253772971 8157547 complement(1659952..1660917) 1 NC_012947.1 PFAM: PfkB domain protein; KEGG: sbo:SBO_0921 kinase; PfkB domain protein 1660917 8157547 ECBD_1557 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PfkB domain protein YP_003035802.1 1659952 R 866768 CDS YP_003035803.1 253772972 8157548 complement(1660914..1661918) 1 NC_012947.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: ssn:SSON_2147 hypothetical protein; ADP-ribosylation/crystallin J1 1661918 8157548 ECBD_1558 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ADP-ribosylation/crystallin J1 YP_003035803.1 1660914 R 866768 CDS YP_003035804.1 253772973 8157549 complement(1661915..1663192) 1 NC_012947.1 TIGRFAM: nucleoside transporter; PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1140 nucleoside transporter; nucleoside transporter 1663192 8157549 ECBD_1559 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside transporter YP_003035804.1 1661915 R 866768 CDS YP_003035805.1 253772974 8157550 1663449..1664501 1 NC_012947.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 1664501 8157550 ECBD_1560 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-bisphosphate aldolase YP_003035805.1 1663449 D 866768 CDS YP_003035806.1 253772975 8157551 1664795..1665655 1 NC_012947.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 1665655 gatY 8157551 gatY Escherichia coli 'BL21-Gold(DE3)pLysS AG' tagatose-bisphosphate aldolase YP_003035806.1 1664795 D 866768 CDS YP_003035807.1 253772976 8157552 1665684..1666946 1 NC_012947.1 TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: sbc:SbBS512_E1143 tagatose-6-phosphate kinase; D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 1666946 8157552 ECBD_1562 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit YP_003035807.1 1665684 D 866768 CDS YP_003035808.1 253772977 8157553 1666956..1667408 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 1667408 8157553 ECBD_1563 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system galactitol-specific transporter subunit IIA YP_003035808.1 1666956 D 866768 CDS YP_003035809.1 253772978 8157554 1667439..1667723 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 1667723 8157554 ECBD_1564 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system galactitol-specific transporter subunit IIB YP_003035809.1 1667439 D 866768 CDS YP_003035810.1 253772979 8157555 1667727..1669082 1 NC_012947.1 TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component; PTS system, galactitol-specific IIC subunit 1669082 8157555 ECBD_1565 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, galactitol-specific IIC subunit YP_003035810.1 1667727 D 866768 CDS YP_003035811.1 253772980 8157556 1669130..1670170 1 NC_012947.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 1670170 8157556 ECBD_1566 Escherichia coli 'BL21-Gold(DE3)pLysS AG' galactitol-1-phosphate dehydrogenase YP_003035811.1 1669130 D 866768 CDS YP_003035812.1 253772981 8157558 complement(1670524..1671027) 1 NC_012947.1 PFAM: IS1 transposase; KEGG: dps:DP0860 insertion element IS1 1/5/6 protein (InsB); IS1 transposase 1671027 8157558 ECBD_1568 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003035812.1 1670524 R 866768 CDS YP_003035813.1 253772982 8157559 complement(1670946..1671221) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 1671221 8157559 ECBD_1569 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003035813.1 1670946 R 866768 CDS YP_003035814.1 253772983 8157560 complement(1671907..1672806) 1 NC_012947.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 1672806 8157560 ECBD_1570 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipid kinase YP_003035814.1 1671907 R 866768 CDS YP_003035815.1 253772984 8157561 1673211..1673528 1 NC_012947.1 KEGG: sbo:SBO_0909 hypothetical protein; hypothetical protein 1673528 8157561 ECBD_1571 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035815.1 1673211 D 866768 CDS YP_003035816.1 253772985 8157562 complement(1673859..1675220) 1 NC_012947.1 PFAM: peptidase U32; KEGG: ssn:SSON_2134 hypothetical protein; peptidase U32 1675220 8157562 ECBD_1572 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase U32 YP_003035816.1 1673859 R 866768 CDS YP_003035817.1 253772986 8157563 complement(1675366..1675698) 1 NC_012947.1 PFAM: protein of unknown function DUF1508; KEGG: ssn:SSON_2133 hypothetical protein; hypothetical protein 1675698 8157563 ECBD_1573 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035817.1 1675366 R 866768 CDS YP_003035818.1 253772987 8157564 complement(1675889..1676611) 1 NC_012947.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 1676611 8157564 ECBD_1574 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator BaeR YP_003035818.1 1675889 R 866768 CDS YP_003035819.1 253772988 8157565 complement(1676608..1678011) 1 NC_012947.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sbc:SbBS512_E1155 sensor histidine kinase BaeS; signal transduction histidine-protein kinase BaeS 1678011 8157565 ECBD_1575 Escherichia coli 'BL21-Gold(DE3)pLysS AG' signal transduction histidine-protein kinase BaeS YP_003035819.1 1676608 R 866768 CDS YP_003035820.1 253772989 8157566 complement(1678008..1679423) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1156 multidrug resistance protein MdtD; multidrug efflux system protein MdtE 1679423 8157566 ECBD_1576 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system protein MdtE YP_003035820.1 1678008 R 866768 CDS YP_003035821.1 253772990 8157567 complement(1679424..1682501) 1 NC_012947.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 1682501 8157567 ECBD_1577 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system subunit MdtC YP_003035821.1 1679424 R 866768 CDS YP_003035822.1 253772991 8157568 complement(1682502..1685624) 1 NC_012947.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 1685624 8157568 ECBD_1578 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system subunit MdtB YP_003035822.1 1682502 R 866768 CDS YP_003035823.1 253772992 8157569 complement(1685624..1686871) 1 NC_012947.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 1686871 8157569 ECBD_1579 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system subunit MdtA YP_003035823.1 1685624 R 866768 CDS YP_003035824.1 253772993 8157570 complement(1687041..1687169) 1 NC_012947.1 hypothetical protein 1687169 8157570 ECBD_1580 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035824.1 1687041 R 866768 CDS YP_003035825.1 253772994 8157571 complement(1687369..1687515) 1 NC_012947.1 hypothetical protein 1687515 8157571 ECBD_1581 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035825.1 1687369 R 866768 CDS YP_003035826.1 253772995 8157572 complement(1687697..1687843) 1 NC_012947.1 hypothetical protein 1687843 8157572 ECBD_1582 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035826.1 1687697 R 866768 CDS YP_003035827.1 253772996 8157573 1688416..1689075 1 NC_012947.1 PFAM: von Willebrand factor A; SMART: von Willebrand factor A; KEGG: sbo:SBO_0899 hypothetical protein; von Willebrand factor A 1689075 8157573 ECBD_1583 Escherichia coli 'BL21-Gold(DE3)pLysS AG' von Willebrand factor A YP_003035827.1 1688416 D 866768 CDS YP_003035828.1 253772997 8157574 1689072..1689833 1 NC_012947.1 KEGG: sbc:SbBS512_E1161 hypothetical protein; hypothetical protein 1689833 8157574 ECBD_1584 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035828.1 1689072 D 866768 CDS YP_003035829.1 253772998 8157575 1689830..1691770 1 NC_012947.1 KEGG: sbc:SbBS512_E1162 hypothetical protein; hypothetical protein 1691770 8157575 ECBD_1585 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035829.1 1689830 D 866768 CDS YP_003035830.1 253772999 8157576 complement(1691783..1693135) 1 NC_012947.1 KEGG: elf:LF82_2973 uncharacterized chaperone protein YegD; chaperone 1693135 8157576 ECBD_1586 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chaperone YP_003035830.1 1691783 R 866768 CDS YP_003035831.1 253773000 8157577 1693269..1694117 1 NC_012947.1 inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyl-adenine DNA glycosylase II 1694117 8157577 ECBD_1587 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-methyl-adenine DNA glycosylase II YP_003035831.1 1693269 D 866768 CDS YP_003035832.1 253773001 8157578 complement(1694218..1697535) 1 NC_012947.1 contains a MASE1 (membrane-Associated Sensor) domain; potentially involved in signal transduction; sensor protein 1697535 8157578 ECBD_1588 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensor protein YP_003035832.1 1694218 R 866768 CDS YP_003035833.1 253773002 8157579 1697853..1698494 1 NC_012947.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1698494 8157579 ECBD_1589 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uridine kinase YP_003035833.1 1697853 D 866768 CDS YP_003035834.1 253773003 8157580 1698586..1699167 1 NC_012947.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1699167 dcd 8157580 dcd Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxycytidine triphosphate deaminase YP_003035834.1 1698586 D 866768 CDS YP_003035835.1 253773004 8157581 1699189..1701042 1 NC_012947.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein 1701042 8157581 ECBD_1591 Escherichia coli 'BL21-Gold(DE3)pLysS AG' assembly protein YP_003035835.1 1699189 D 866768 CDS YP_003035836.1 253773005 8157582 complement(1701316..1702899) 1 NC_012947.1 PFAM: integral membrane protein TerC; CBS domain containing protein; transporter-associated region; KEGG: sbo:SBO_0890 transporter; integral membrane protein TerC 1702899 8157582 ECBD_1592 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integral membrane protein TerC YP_003035836.1 1701316 R 866768 CDS YP_003035837.1 253773006 8157583 1703558..1704697 1 NC_012947.1 PFAM: polysaccharide export protein; KEGG: ssn:SSON_2115 polysaccharide export protein; polysaccharide export protein 1704697 8157583 ECBD_1593 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polysaccharide export protein YP_003035837.1 1703558 D 866768 CDS YP_003035838.1 253773007 8157584 1704703..1705146 1 NC_012947.1 Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase 1705146 8157584 ECBD_1594 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tyrosine phosphatase YP_003035838.1 1704703 D 866768 CDS YP_003035839.1 253773008 8157585 1705149..1707311 1 NC_012947.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 1707311 8157585 ECBD_1595 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tyrosine kinase YP_003035839.1 1705149 D 866768 CDS YP_003035840.1 253773009 8157424 1707404..1708243 1 NC_012947.1 PFAM: glycosyl transferase family 2; KEGG: sfv:SFV_2118 glycosyl transferase; glycosyl transferase 1708243 8157424 ECBD_1596 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase YP_003035840.1 1707404 D 866768 CDS YP_003035841.1 253773010 8156418 1708246..1708734 1 NC_012947.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; colanic acid biosynthesis acetyltransferase WcaB 1708734 8156418 ECBD_1597 Escherichia coli 'BL21-Gold(DE3)pLysS AG' colanic acid biosynthesis acetyltransferase WcaB YP_003035841.1 1708246 D 866768 CDS YP_003035842.1 253773011 8156419 1708731..1709948 1 NC_012947.1 KEGG: ssn:SSON_2110 predicted glycosyl transferase; glycosyl transferase 1709948 8156419 ECBD_1598 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase YP_003035842.1 1708731 D 866768 CDS YP_003035843.1 253773012 8156420 1709923..1711140 1 NC_012947.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein 1711140 wcaD 8156420 wcaD Escherichia coli 'BL21-Gold(DE3)pLysS AG' colanic acid biosynthesis protein YP_003035843.1 1709923 D 866768 CDS YP_003035844.1 253773013 8156421 1711151..1711897 1 NC_012947.1 PFAM: glycosyl transferase family 2; KEGG: ssn:SSON_2108 predicted glycosyl transferase; glycosyl transferase 1711897 8156421 ECBD_1600 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase YP_003035844.1 1711151 D 866768 CDS YP_003035845.1 253773014 8156422 1711913..1712461 1 NC_012947.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF 1712461 8156422 ECBD_1601 Escherichia coli 'BL21-Gold(DE3)pLysS AG' colanic acid biosynthesis acetyltransferase WcaF YP_003035845.1 1711913 D 866768 CDS YP_003035846.1 253773015 8156423 1712488..1713609 1 NC_012947.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2106 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase 1713609 8156423 ECBD_1602 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GDP-mannose 4,6-dehydratase YP_003035846.1 1712488 D 866768 CDS YP_003035847.1 253773016 8156424 1713612..1714577 1 NC_012947.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2105 nucleotide di-P-sugar epimerase or dehydratase; NAD-dependent epimerase/dehydratase 1714577 8156424 ECBD_1603 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD-dependent epimerase/dehydratase YP_003035847.1 1713612 D 866768 CDS YP_003035848.1 253773017 8156425 1714577..1715059 1 NC_012947.1 PFAM: NUDIX hydrolase; KEGG: ssn:SSON_2104 GDP-mannose mannosyl hydrolase; NUDIX hydrolase 1715059 8156425 ECBD_1604 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NUDIX hydrolase YP_003035848.1 1714577 D 866768 CDS YP_003035849.1 253773018 8156426 1715056..1716279 1 NC_012947.1 PFAM: glycosyl transferase group 1; KEGG: sfx:S2236 glycosyl transferase; glycosyl transferase 1716279 8156426 ECBD_1605 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase YP_003035849.1 1715056 D 866768 CDS YP_003035850.1 253773019 8156427 1716282..1717718 1 NC_012947.1 KEGG: elf:LF82_0345 mannose-1-phosphate guanylyltransferase [GDP]; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: nucleotidyl transferase; cupin; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1717718 8156427 ECBD_1606 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_003035850.1 1716282 D 866768 CDS YP_003035851.1 253773020 8156428 1717911..1719281 1 NC_012947.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase; KEGG: efe:EFER_2132 phosphomannomutase; phosphomannomutase 1719281 8156428 ECBD_1607 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphomannomutase YP_003035851.1 1717911 D 866768 CDS YP_003035852.1 253773021 8156429 1719336..1720730 1 NC_012947.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase 1720730 8156429 ECBD_1608 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-glucose lipid carrier transferase YP_003035852.1 1719336 D 866768 CDS YP_003035853.1 253773022 8156430 1720732..1722210 1 NC_012947.1 PFAM: polysaccharide biosynthesis protein; colanic acid exporter 1722210 8156430 ECBD_1609 Escherichia coli 'BL21-Gold(DE3)pLysS AG' colanic acid exporter YP_003035853.1 1720732 D 866768 CDS YP_003035854.1 253773023 8156431 1722372..1723652 1 NC_012947.1 PFAM: polysaccharide pyruvyl transferase; KEGG: sbo:SBO_0872 pyruvyl transferase; pyruvyl transferase 1723652 8156431 ECBD_1610 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvyl transferase YP_003035854.1 1722372 D 866768 CDS YP_003035855.1 253773024 8156432 1723649..1724869 1 NC_012947.1 PFAM: glycosyl transferase group 1; KEGG: efe:EFER_2128 glycosyl transferase; glycosyl transferase group 1 1724869 8156432 ECBD_1611 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase group 1 YP_003035855.1 1723649 D 866768 CDS YP_003035856.1 253773025 8156433 1724880..1726274 1 NC_012947.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein 1726274 wcaM 8156433 wcaM Escherichia coli 'BL21-Gold(DE3)pLysS AG' colanic acid biosynthesis protein YP_003035856.1 1724880 D 866768 CDS YP_003035857.1 253773026 8156434 1726449..1727342 1 NC_012947.1 together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalF 1727342 8156434 ECBD_1613 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UTP--glucose-1-phosphate uridylyltransferase subunit GalF YP_003035857.1 1726449 D 866768 CDS YP_003035858.1 253773027 8156435 1727715..1728800 1 NC_012947.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose 4,6 dehydratase 1728800 8156435 ECBD_1614 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dTDP-glucose 4,6 dehydratase YP_003035858.1 1727715 D 866768 CDS YP_003035859.1 253773028 8156436 1728800..1729699 1 NC_012947.1 with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; dTDP-4-dehydrorhamnose reductase 1729699 8156436 ECBD_1615 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dTDP-4-dehydrorhamnose reductase YP_003035859.1 1728800 D 866768 CDS YP_003035860.1 253773029 8156437 1729758..1730636 1 NC_012947.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: sfv:SFV_2096 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1730636 8156437 ECBD_1616 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucose-1-phosphate thymidylyltransferase YP_003035860.1 1729758 D 866768 CDS YP_003035861.1 253773030 8156438 1730641..1731186 1 NC_012947.1 KEGG: sfv:SFV_2095 dTDP-6-deoxy-L-mannose-dehydrogenase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1731186 8156438 ECBD_1617 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dTDP-4-dehydrorhamnose 3,5-epimerase YP_003035861.1 1730641 D 866768 CDS YP_003035862.1 253773031 8156439 1731190..1732614 1 NC_012947.1 PFAM: polysaccharide biosynthesis protein; KEGG: shw:Sputw3181_1467 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1732614 8156439 ECBD_1618 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polysaccharide biosynthesis protein YP_003035862.1 1731190 D 866768 CDS YP_003035863.1 253773032 8156440 1732624..1733736 1 NC_012947.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: she:Shewmr4_1321 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1733736 8156440 ECBD_1619 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DegT/DnrJ/EryC1/StrS aminotransferase YP_003035863.1 1732624 D 866768 CDS YP_003035864.1 253773033 8156441 1733738..1734316 1 NC_012947.1 KEGG: she:Shewmr4_1322 acetyltransferase; acetyltransferase 1734316 8156441 ECBD_1620 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyltransferase YP_003035864.1 1733738 D 866768 CDS YP_003035865.1 253773034 8156442 1734313..1735059 1 NC_012947.1 KEGG: pub:SAR11_0820 rhamnosyltransferase; hypothetical protein 1735059 8156442 ECBD_1621 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035865.1 1734313 D 866768 CDS YP_003035866.1 253773035 8156443 1735059..1735880 1 NC_012947.1 hypothetical protein 1735880 8156443 ECBD_1622 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035866.1 1735059 D 866768 CDS YP_003035867.1 253773036 8156444 1735877..1737052 1 NC_012947.1 KEGG: son:SO_3179 lipopolysaccharide biosynthesis polymerase; hypothetical protein 1737052 8156444 ECBD_1623 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035867.1 1735877 D 866768 CDS YP_003035868.1 253773037 8156445 1737049..1738161 1 NC_012947.1 PFAM: glycosyl transferase group 1; KEGG: aci:ACIAD0084 mannosyl transferase; glycosyl transferase group 1 1738161 8156445 ECBD_1624 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase group 1 YP_003035868.1 1737049 D 866768 CDS YP_003035869.1 253773038 8156447 1738969..1739244 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 1739244 8156447 ECBD_1626 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003035869.1 1738969 D 866768 CDS YP_003035870.1 253773039 8156448 1739163..1739666 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 1739666 8156448 ECBD_1627 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003035870.1 1739163 D 866768 CDS YP_003035871.1 253773040 8156449 1739752..1741176 1 NC_012947.1 KEGG: efe:EFER_2133 mannose-1-phosphate guanyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: nucleotidyl transferase; cupin; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1741176 8156449 ECBD_1628 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_003035871.1 1739752 D 866768 CDS YP_003035872.1 253773041 8156450 1741210..1742574 1 NC_012947.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase; KEGG: ssn:SSON_2101 phosphomannomutase; phosphomannomutase 1742574 8156450 ECBD_1629 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphomannomutase YP_003035872.1 1741210 D 866768 CDS YP_003035873.1 253773042 8156451 1742738..1744144 1 NC_012947.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1744144 8156451 ECBD_1630 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 6-phosphogluconate dehydrogenase YP_003035873.1 1742738 D 866768 CDS YP_003035874.1 253773043 8156452 1744392..1745558 1 NC_012947.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1745558 8156452 ECBD_1631 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleotide sugar dehydrogenase YP_003035874.1 1744392 D 866768 CDS YP_003035875.1 253773044 8156453 1745704..1746684 1 NC_012947.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: ssn:SSON_2098 regulator of length of O-antigen component of lipopolysaccharide chains; lipopolysaccharide biosynthesis protein 1746684 8156453 ECBD_1632 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipopolysaccharide biosynthesis protein YP_003035875.1 1745704 D 866768 CDS YP_003035876.1 253773045 8156454 complement(1746780..1747391) 1 NC_012947.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 1747391 8156454 ECBD_1633 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_003035876.1 1746780 R 866768 CDS YP_003035877.1 253773046 8156455 complement(1747385..1748161) 1 NC_012947.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1748161 8156455 ECBD_1634 Escherichia coli 'BL21-Gold(DE3)pLysS AG' imidazole glycerol phosphate synthase subunit HisF YP_003035877.1 1747385 R 866768 CDS YP_003035878.1 253773047 8156456 complement(1748143..1748880) 1 NC_012947.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1748880 8156456 ECBD_1635 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_003035878.1 1748143 R 866768 CDS YP_003035879.1 253773048 8156457 complement(1748880..1749470) 1 NC_012947.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1749470 hisH 8156457 hisH Escherichia coli 'BL21-Gold(DE3)pLysS AG' imidazole glycerol phosphate synthase subunit HisH YP_003035879.1 1748880 R 866768 CDS YP_003035880.1 253773049 8156458 complement(1749470..1750537) 1 NC_012947.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1750537 8156458 ECBD_1637 Escherichia coli 'BL21-Gold(DE3)pLysS AG' imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_003035880.1 1749470 R 866768 CDS YP_003035881.1 253773050 8156459 complement(1750537..1751607) 1 NC_012947.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1751607 8156459 ECBD_1638 Escherichia coli 'BL21-Gold(DE3)pLysS AG' histidinol-phosphate aminotransferase YP_003035881.1 1750537 R 866768 CDS YP_003035882.1 253773051 8156460 complement(1751604..1752908) 1 NC_012947.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1752908 hisD 8156460 hisD Escherichia coli 'BL21-Gold(DE3)pLysS AG' histidinol dehydrogenase YP_003035882.1 1751604 R 866768 CDS YP_003035883.1 253773052 8156461 complement(1752914..1753813) 1 NC_012947.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1753813 hisG 8156461 hisG Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP phosphoribosyltransferase YP_003035883.1 1752914 R 866768 CDS YP_003035884.1 253773053 8156462 1754436..1755260 1 NC_012947.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2086 enzyme of sugar metabolism; NAD-dependent epimerase/dehydratase 1755260 8156462 ECBD_1641 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD-dependent epimerase/dehydratase YP_003035884.1 1754436 D 866768 CDS YP_003035885.1 253773054 8156463 1755285..1756235 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_2085 transcriptional regulator LysR-type; LysR family transcriptional regulator 1756235 8156463 ECBD_1642 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003035885.1 1755285 D 866768 CDS YP_003035886.1 253773055 8156464 1756502..1757860 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2226 amino acid/amine transporter; amino acid permease-associated region 1757860 8156464 ECBD_1643 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid permease-associated region YP_003035886.1 1756502 D 866768 CDS YP_003035887.1 253773056 8156465 1758039..1759097 1 NC_012947.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: efe:EFER_2096 conserved hypothetical protein; inner membrane protein; hypothetical protein 1759097 8156465 ECBD_1644 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035887.1 1758039 D 866768 CDS YP_003035888.1 253773057 8156466 1759111..1759338 1 NC_012947.1 PFAM: SirA family protein; KEGG: ssn:SSON_2082 hypothetical protein; SirA family protein 1759338 8156466 ECBD_1645 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SirA family protein YP_003035888.1 1759111 D 866768 CDS YP_003035889.1 253773058 8156467 complement(1759381..1760808) 1 NC_012947.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1760808 sbcB 8156467 sbcB Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease I YP_003035889.1 1759381 R 866768 CDS YP_003035890.1 253773059 8156468 1761017..1762183 1 NC_012947.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 1762183 dacD 8156468 dacD Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanyl-D-alanine carboxypeptidase YP_003035890.1 1761017 D 866768 CDS YP_003035891.1 253773060 8156469 1762302..1762775 1 NC_012947.1 PFAM: transcription activator effector binding; DNA gyrase inhibitor 1762775 8156469 ECBD_1648 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA gyrase inhibitor YP_003035891.1 1762302 D 866768 CDS YP_003035892.1 253773061 8156470 1762973..1764031 1 NC_012947.1 membrane protein-like protein 1764031 8156470 ECBD_1649 Escherichia coli 'BL21-Gold(DE3)pLysS AG' membrane protein-like protein YP_003035892.1 1762973 D 866768 CDS YP_003035893.1 253773062 8156471 1764203..1764532 1 NC_012947.1 PFAM: protein of unknown function DUF496; KEGG: ssn:SSON_2077 hypothetical protein; hypothetical protein 1764532 8156471 ECBD_1650 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035893.1 1764203 D 866768 CDS YP_003035894.1 253773063 8156472 1765680..1766081 1 NC_012947.1 hypothetical protein 1766081 8156472 ECBD_1651 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035894.1 1765680 D 866768 CDS YP_003035895.1 253773064 8156475 complement(1766832..1767224) 1 NC_012947.1 KEGG: cko:CKO_02654 hypothetical protein; hypothetical protein 1767224 8156475 ECBD_1654 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035895.1 1766832 R 866768 CDS YP_003035896.1 253773065 8156477 1768896..1769441 1 NC_012947.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1769441 cobU 8156477 cobU Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_003035896.1 1768896 D 866768 CDS YP_003035897.1 253773066 8156478 1769438..1770181 1 NC_012947.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1770181 cobS 8156478 cobS Escherichia coli 'BL21-Gold(DE3)pLysS AG' cobalamin synthase YP_003035897.1 1769438 D 866768 CDS YP_003035898.1 253773067 8156479 1770193..1771272 1 NC_012947.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1771272 cobT 8156479 cobT Escherichia coli 'BL21-Gold(DE3)pLysS AG' nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_003035898.1 1770193 D 866768 CDS YP_003035899.1 253773068 8156480 1771334..1772269 1 NC_012947.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_2243 hypothetical protein; hypothetical protein 1772269 8156480 ECBD_1659 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035899.1 1771334 D 866768 CDS YP_003035900.1 253773069 8156482 1772727..1773644 1 NC_012947.1 transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation; nitrogen assimilation transcriptional regulator 1773644 8156482 ECBD_1660 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrogen assimilation transcriptional regulator YP_003035900.1 1772727 D 866768 CDS YP_003035901.1 253773070 8156483 1773746..1774696 1 NC_012947.1 LysR-type transcriptional regulator similar to CysB; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates two operons consisting of ABC transporters that are part of the cys regulon; regulated by CysB; transcriptional regulator Cbl 1774696 cbl 8156483 cbl Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator Cbl YP_003035901.1 1773746 D 866768 CDS YP_003035902.1 253773071 8156485 1774970..1776457 1 NC_012947.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ssn:SSON_2044 predicted multidrug efflux system; hypothetical protein 1776457 8156485 ECBD_1662 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035902.1 1774970 D 866768 CDS YP_003035903.1 253773072 8156487 complement(1777087..1777803) 1 NC_012947.1 PFAM: protein of unknown function DUF28; KEGG: sbo:SBO_1217 hypothetical protein; hypothetical protein 1777803 8156487 ECBD_1663 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035903.1 1777087 R 866768 CDS YP_003035904.1 253773073 8156488 complement(1778146..1779600) 1 NC_012947.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1779600 8156488 ECBD_1664 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AMP nucleosidase YP_003035904.1 1778146 R 866768 CDS YP_003035905.1 253773074 8156489 complement(1779702..1781018) 1 NC_012947.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; general substrate transporter; shikimate transporter 1781018 8156489 ECBD_1665 Escherichia coli 'BL21-Gold(DE3)pLysS AG' shikimate transporter YP_003035905.1 1779702 R 866768 CDS YP_003035906.1 253773075 8156491 complement(1782647..1789723) 1 NC_012947.1 PFAM: Ig domain protein group 1 domain protein; SMART: Ig domain protein group 1 domain protein; PKD domain containing protein; Ig domain protein group 1 domain protein 1789723 8156491 ECBD_1667 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Ig domain protein group 1 domain protein YP_003035906.1 1782647 R 866768 CDS YP_003035907.1 253773076 8156492 complement(1789764..1789913) 1 NC_012947.1 hypothetical protein 1789913 8156492 ECBD_1668 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035907.1 1789764 R 866768 CDS YP_003035908.1 253773077 8156494 complement(1790213..1791010) 1 NC_012947.1 PFAM: protein of unknown function DUF980; KEGG: ssn:SSON_2035 hypothetical protein; hypothetical protein 1791010 8156494 ECBD_1669 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035908.1 1790213 R 866768 CDS YP_003035909.1 253773078 8156496 complement(1791810..1793018) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: apa:APP7_1819 iso-IS10R ORF; transposase IS4 family protein 1793018 8156496 ECBD_1670 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003035909.1 1791810 R 866768 CDS YP_003035910.1 253773079 8156498 1793769..1794419 1 NC_012947.1 PFAM: YodA domain protein; KEGG: sbc:SbBS512_E0910 metal-binding protein; hypothetical protein 1794419 8156498 ECBD_1672 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035910.1 1793769 D 866768 CDS YP_003035911.1 253773080 8158073 1794762..1795271 1 NC_012947.1 PFAM: cytochrome B561; KEGG: sbo:SBO_1032 cytochrome; cytochrome B561 1795271 8158073 ECBD_1673 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome B561 YP_003035911.1 1794762 D 866768 CDS YP_003035912.1 253773081 8157664 complement(1795281..1796489) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: sea:SeAg_B3181 IS10 transposase; transposase IS4 family protein 1796489 8157664 ECBD_1674 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003035912.1 1795281 R 866768 CDS YP_003035913.1 253773082 8157665 complement(1796549..1796854) 1 NC_012947.1 KEGG: sdy:SDY_1034 sulfite oxidase subunit YedZ; sulfite oxidase subunit YedZ 1796854 8157665 ECBD_1675 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfite oxidase subunit YedZ YP_003035913.1 1796549 R 866768 CDS YP_003035914.1 253773083 8157666 complement(1796855..1797859) 1 NC_012947.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 1797859 8157666 ECBD_1676 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfite oxidase subunit YedY YP_003035914.1 1796855 R 866768 CDS YP_003035915.1 253773084 8157667 complement(1797968..1798381) 1 NC_012947.1 KEGG: sfv:SFV_2015 hypothetical protein; TIGRFAM: hydroxyisourate hydrolase; PFAM: transthyretin; SMART: transthyretin; hydroxyisourate hydrolase 1798381 8157667 ECBD_1677 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydroxyisourate hydrolase YP_003035915.1 1797968 R 866768 CDS YP_003035916.1 253773085 8157668 1798403..1799185 1 NC_012947.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW 1799185 8157668 ECBD_1678 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulatory protein YedW YP_003035916.1 1798403 D 866768 CDS YP_003035917.1 253773086 8157669 1799185..1800543 1 NC_012947.1 KEGG: ssn:SSON_2026 2-component sensor protein; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 1800543 8157669 ECBD_1679 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heavy metal sensor signal transduction histidine kinase YP_003035917.1 1799185 D 866768 CDS YP_003035918.1 253773087 8157670 complement(1800651..1801502) 1 NC_012947.1 Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; chaperone protein HchA 1801502 8157670 ECBD_1680 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chaperone protein HchA YP_003035918.1 1800651 R 866768 CDS YP_003035919.1 253773088 8157671 complement(1801523..1801666) 1 NC_012947.1 hypothetical protein 1801666 8157671 ECBD_1681 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035919.1 1801523 R 866768 CDS YP_003035920.1 253773089 8157673 1803916..1804218 1 NC_012947.1 KEGG: sbo:SBO_1045 hypothetical protein; hypothetical protein 1804218 8157673 ECBD_1683 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035920.1 1803916 D 866768 CDS YP_003035921.1 253773090 8157674 1804258..1804953 1 NC_012947.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sbc:SbBS512_E0922 metal-dependent phosphohydrolase; hypothetical protein 1804953 8157674 ECBD_1684 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035921.1 1804258 D 866768 CDS YP_003035922.1 253773091 8157675 1805020..1806438 1 NC_012947.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA cytosine methylase 1806438 8157675 ECBD_1685 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA cytosine methylase YP_003035922.1 1805020 D 866768 CDS YP_003035923.1 253773092 8157676 1806419..1806889 1 NC_012947.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: elf:LF82_2418 very short patch repair protein; DNA mismatch endonuclease Vsr 1806889 8157676 ECBD_1686 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA mismatch endonuclease Vsr YP_003035923.1 1806419 D 866768 CDS YP_003035924.1 253773093 8157677 complement(1806878..1807798) 1 NC_012947.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: elf:LF82_2949 uncharacterized inner membrane transporter YedA; hypothetical protein 1807798 8157677 ECBD_1687 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035924.1 1806878 R 866768 CDS YP_003035925.1 253773094 8157678 1807971..1808888 1 NC_012947.1 PFAM: protein of unknown function DUF808; KEGG: sdy:SDY_1048 hypothetical protein; hypothetical protein 1808888 8157678 ECBD_1688 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035925.1 1807971 D 866768 CDS YP_003035926.1 253773095 8157679 1808967..1809149 1 NC_012947.1 KEGG: ssn:SSON_2014 hypothetical protein; hypothetical protein 1809149 8157679 ECBD_1689 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035926.1 1808967 D 866768 CDS YP_003035927.1 253773096 8157680 1809320..1811014 1 NC_012947.1 KEGG: ssn:SSON_2013 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1811014 8157680 ECBD_1690 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase YP_003035927.1 1809320 D 866768 CDS YP_003035928.1 253773097 8157681 complement(1811011..1811826) 1 NC_012947.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 1811826 8157681 ECBD_1691 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannosyl-3-phosphoglycerate phosphatase YP_003035928.1 1811011 R 866768 CDS YP_003035929.1 253773098 8157682 complement(1812124..1812351) 1 NC_012947.1 KEGG: sdy:SDY_1052 hypothetical protein; hypothetical protein 1812351 8157682 ECBD_1692 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035929.1 1812124 R 866768 CDS YP_003035930.1 253773099 8157683 1812514..1812702 1 NC_012947.1 KEGG: ssn:SSON_2010 hypothetical protein; hypothetical protein 1812702 8157683 ECBD_1693 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035930.1 1812514 D 866768 CDS YP_003035931.1 253773100 8157684 complement(1812746..1813369) 1 NC_012947.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sfv:SFV_1994 positive regulator for ctr capsule biosynthesis, positive transcription factor; LuxR family transcriptional regulator 1813369 8157684 ECBD_1694 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LuxR family transcriptional regulator YP_003035931.1 1812746 R 866768 CDS YP_003035932.1 253773101 8157685 complement(1813659..1814444) 1 NC_012947.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1814444 fliR 8157685 fliR Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis protein FliR YP_003035932.1 1813659 R 866768 CDS YP_003035933.1 253773102 8157686 complement(1814452..1814721) 1 NC_012947.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1814721 fliQ 8157686 fliQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis protein FliQ YP_003035933.1 1814452 R 866768 CDS YP_003035934.1 253773103 8157687 complement(1814731..1815468) 1 NC_012947.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1815468 fliP 8157687 fliP Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis protein FliP YP_003035934.1 1814731 R 866768 CDS YP_003035935.1 253773104 8157688 complement(1815468..1815833) 1 NC_012947.1 with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 1815833 8157688 ECBD_1698 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis protein FliO YP_003035935.1 1815468 R 866768 CDS YP_003035936.1 253773105 8157689 complement(1815836..1816249) 1 NC_012947.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 1816249 fliN 8157689 fliN Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar motor switch protein FliN YP_003035936.1 1815836 R 866768 CDS YP_003035937.1 253773106 8157690 complement(1816246..1817250) 1 NC_012947.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1817250 fliM 8157690 fliM Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar motor switch protein FliM YP_003035937.1 1816246 R 866768 CDS YP_003035938.1 253773107 8157691 complement(1817255..1817719) 1 NC_012947.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1817719 fliL 8157691 fliL Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body-associated protein FliL YP_003035938.1 1817255 R 866768 CDS YP_003035939.1 253773108 8157692 complement(1817824..1818951) 1 NC_012947.1 PFAM: flagellar hook-length control protein; flagellar hook-length control protein 1818951 8157692 ECBD_1702 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar hook-length control protein YP_003035939.1 1817824 R 866768 CDS YP_003035940.1 253773109 8157693 complement(1818948..1819391) 1 NC_012947.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 1819391 fliJ 8157693 fliJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis chaperone YP_003035940.1 1818948 R 866768 CDS YP_003035941.1 253773110 8157694 complement(1819410..1820783) 1 NC_012947.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1820783 fliI 8157694 fliI Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellum-specific ATP synthase YP_003035941.1 1819410 R 866768 CDS YP_003035942.1 253773111 8157695 complement(1820783..1821469) 1 NC_012947.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1821469 fliH 8157695 fliH Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar assembly protein H YP_003035942.1 1820783 R 866768 CDS YP_003035943.1 253773112 8157696 complement(1821462..1822457) 1 NC_012947.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1822457 fliG 8157696 fliG Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar motor switch protein G YP_003035943.1 1821462 R 866768 CDS YP_003035944.1 253773113 8157697 complement(1822450..1824108) 1 NC_012947.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1824108 fliF 8157697 fliF Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar MS-ring protein YP_003035944.1 1822450 R 866768 CDS YP_003035945.1 253773114 8157698 1824323..1824637 1 NC_012947.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1824637 fliE 8157698 fliE Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar hook-basal body protein FliE YP_003035945.1 1824323 D 866768 CDS YP_003035946.1 253773115 8157700 complement(1826258..1826737) 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: efe:EFER_2671 acyltransferase; GCN5-related N-acetyltransferase 1826737 8157700 ECBD_1710 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GCN5-related N-acetyltransferase YP_003035946.1 1826258 R 866768 CDS YP_003035947.1 253773116 8157701 complement(1826848..1827516) 1 NC_012947.1 PFAM: protein of unknown function DUF159; KEGG: ssn:SSON_1987 hypothetical protein; hypothetical protein 1827516 8157701 ECBD_1711 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035947.1 1826848 R 866768 CDS YP_003035948.1 253773117 8157702 complement(1827625..1827858) 1 NC_012947.1 PFAM: SirA family protein; KEGG: sea:SeAg_B1154 hypothetical protein; hypothetical protein 1827858 8157702 ECBD_1712 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035948.1 1827625 R 866768 CDS YP_003035949.1 253773118 8157703 complement(1827855..1829060) 1 NC_012947.1 PFAM: protein of unknown function DUF395 YeeE/YedE; inner membrane protein 1829060 8157703 ECBD_1713 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane protein YP_003035949.1 1827855 R 866768 CDS YP_003035950.1 253773119 8157704 1829247..1829660 1 NC_012947.1 KEGG: sdy:SDY_1087 hypothetical protein; hypothetical protein 1829660 8157704 ECBD_1714 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035950.1 1829247 D 866768 CDS YP_003035951.1 253773120 8157705 complement(1829694..1831181) 1 NC_012947.1 converts 1,4-alpha-D-glucans to maltodextrin; cytoplasmic alpha-amylase 1831181 8157705 ECBD_1715 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic alpha-amylase YP_003035951.1 1829694 R 866768 CDS YP_003035952.1 253773121 8157706 complement(1831259..1831624) 1 NC_012947.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 1831624 8157706 ECBD_1716 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis protein FliT YP_003035952.1 1831259 R 866768 CDS YP_003035953.1 253773122 8157707 complement(1831624..1832034) 1 NC_012947.1 flagellin specific chaperone; flagellar protein FliS 1832034 fliS 8157707 fliS Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar protein FliS YP_003035953.1 1831624 R 866768 CDS YP_003035954.1 253773123 8157708 complement(1832059..1833465) 1 NC_012947.1 involved in flagellin assembly; flagellar capping protein 1833465 fliD 8157708 fliD Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar capping protein YP_003035954.1 1832059 R 866768 CDS YP_003035955.1 253773124 8157709 1833731..1835227 1 NC_012947.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin 1835227 8157709 ECBD_1719 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellin YP_003035955.1 1833731 D 866768 CDS YP_003035956.1 253773125 8157710 1835548..1836267 1 NC_012947.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1836267 fliA 8157710 fliA Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis sigma factor YP_003035956.1 1835548 D 866768 CDS YP_003035957.1 253773126 8157711 1836313..1836864 1 NC_012947.1 expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ 1836864 8157711 ECBD_1721 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagella biosynthesis protein FliZ YP_003035957.1 1836313 D 866768 CDS YP_003035958.1 253773127 8157712 1836895..1837752 1 NC_012947.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: sfl:SF1963 cystine transporter subunit; cystine transporter subunit 1837752 8157712 ECBD_1722 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cystine transporter subunit YP_003035958.1 1836895 D 866768 CDS YP_003035959.1 253773128 8157713 1837857..1838843 1 NC_012947.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 1838843 8157713 ECBD_1723 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-cysteine desulfhydrase YP_003035959.1 1837857 D 866768 CDS YP_003035960.1 253773129 8157714 1838858..1839526 1 NC_012947.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ssn:SSON_1200 transporter permease (former YecC); polar amino acid ABC transporter permease 1839526 8157714 ECBD_1724 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polar amino acid ABC transporter permease YP_003035960.1 1838858 D 866768 CDS YP_003035961.1 253773130 8157715 1839523..1840275 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ssn:SSON_1201 amino-acid ABC transporter ATP-binding protein YecC; ABC transporter ATP-binding protein 1840275 8157715 ECBD_1725 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATP-binding protein YP_003035961.1 1839523 D 866768 CDS YP_003035962.1 253773131 8157716 1840505..1841227 1 NC_012947.1 regulates genes involved in cell division; DNA-binding transcriptional activator SdiA 1841227 8157716 ECBD_1726 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator SdiA YP_003035962.1 1840505 D 866768 CDS YP_003035963.1 253773132 8157717 complement(1841295..1841519) 1 NC_012947.1 KEGG: ssn:SSON_1203 hypothetical protein; hypothetical protein 1841519 8157717 ECBD_1727 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035963.1 1841295 R 866768 CDS YP_003035964.1 253773133 8157718 complement(1841506..1841682) 1 NC_012947.1 hypothetical protein 1841682 8157718 ECBD_1728 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035964.1 1841506 R 866768 CDS YP_003035965.1 253773134 8157719 1841978..1842634 1 NC_012947.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1842634 8157719 ECBD_1729 Escherichia coli 'BL21-Gold(DE3)pLysS AG' response regulator YP_003035965.1 1841978 D 866768 CDS YP_003035966.1 253773135 8157720 1842631..1844463 1 NC_012947.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1844463 uvrC 8157720 uvrC Escherichia coli 'BL21-Gold(DE3)pLysS AG' excinuclease ABC subunit C YP_003035966.1 1842631 D 866768 CDS YP_003035967.1 253773136 8157721 1844520..1845068 1 NC_012947.1 KEGG: sdy:SDY_1106 phosphatidylglycerophosphate synthetase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; phosphatidylglycerophosphate synthetase 1845068 8157721 ECBD_1731 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphatidylglycerophosphate synthetase YP_003035967.1 1844520 D 866768 CDS YP_003035968.1 253773137 8157725 1845718..1846383 1 NC_012947.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: sbo:SBO_1098 hypothetical protein; hypothetical protein 1846383 8157725 ECBD_1732 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035968.1 1845718 D 866768 CDS YP_003035969.1 253773138 8157726 complement(1846445..1847656) 1 NC_012947.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sfv:SFV_1951 tyrosine transporter; aromatic amino acid transporter 1847656 8157726 ECBD_1733 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aromatic amino acid transporter YP_003035969.1 1846445 R 866768 CDS YP_003035970.1 253773139 8157727 1847847..1848086 1 NC_012947.1 KEGG: sbc:SbBS512_E1032 hypothetical protein; hypothetical protein 1848086 8157727 ECBD_1734 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035970.1 1847847 D 866768 CDS YP_003035971.1 253773140 8157728 complement(1848124..1848621) 1 NC_012947.1 cytoplasmic iron storage protein; ferritin 1848621 8157728 ECBD_1735 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferritin YP_003035971.1 1848124 R 866768 CDS YP_003035972.1 253773141 8157729 complement(1848792..1849115) 1 NC_012947.1 KEGG: ssn:SSON_1214 hypothetical protein; hypothetical protein 1849115 8157729 ECBD_1736 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035972.1 1848792 R 866768 CDS YP_003035973.1 253773142 8157730 complement(1849321..1849467) 1 NC_012947.1 KEGG: sbc:SbBS512_E1028 hypothetical protein; hypothetical protein 1849467 8157730 ECBD_1737 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035973.1 1849321 R 866768 CDS YP_003035974.1 253773143 8157731 1849579..1849830 1 NC_012947.1 KEGG: sdy:SDY_1117 hypothetical protein; hypothetical protein 1849830 8157731 ECBD_1738 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035974.1 1849579 D 866768 CDS YP_003035975.1 253773144 8157732 complement(1849909..1850412) 1 NC_012947.1 PFAM: ferritin; KEGG: ssn:SSON_1216 ferritin-like protein; ferritin 1850412 8157732 ECBD_1739 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferritin YP_003035975.1 1849909 R 866768 CDS YP_003035976.1 253773145 8157733 1851209..1852198 1 NC_012947.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1852198 8157733 ECBD_1740 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic binding protein/LacI transcriptional regulator YP_003035976.1 1851209 D 866768 CDS YP_003035977.1 253773146 8157734 1852268..1853782 1 NC_012947.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter ATP-binding protein 1853782 araG 8157734 araG Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-arabinose transporter ATP-binding protein YP_003035977.1 1852268 D 866768 CDS YP_003035978.1 253773147 8157735 1853797..1854783 1 NC_012947.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter permease 1854783 araH 8157735 araH Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-arabinose transporter permease YP_003035978.1 1853797 D 866768 CDS YP_003035979.1 253773148 8157736 1854950..1855750 1 NC_012947.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase 1855750 8157736 ECBD_1743 Escherichia coli 'BL21-Gold(DE3)pLysS AG' trehalose-6-phosphate phosphatase YP_003035979.1 1854950 D 866768 CDS YP_003035980.1 253773149 8157737 1855725..1857149 1 NC_012947.1 KEGG: ssn:SSON_1221 trehalose-6-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; trehalose-6-phosphate synthase 1857149 8157737 ECBD_1744 Escherichia coli 'BL21-Gold(DE3)pLysS AG' trehalose-6-phosphate synthase YP_003035980.1 1855725 D 866768 CDS YP_003035981.1 253773150 8157738 complement(1857156..1857584) 1 NC_012947.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 1857584 8157738 ECBD_1745 Escherichia coli 'BL21-Gold(DE3)pLysS AG' universal stress protein UspC YP_003035981.1 1857156 R 866768 CDS YP_003035982.1 253773151 8157739 1858364..1858714 1 NC_012947.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1858714 8157739 ECBD_1746 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional activator FlhD YP_003035982.1 1858364 D 866768 CDS YP_003035983.1 253773152 8157740 1858717..1859295 1 NC_012947.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1859295 8157740 ECBD_1747 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional activator FlhC YP_003035983.1 1858717 D 866768 CDS YP_003035984.1 253773153 8157741 1859422..1860309 1 NC_012947.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1860309 8157741 ECBD_1748 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar motor protein MotA YP_003035984.1 1859422 D 866768 CDS YP_003035985.1 253773154 8157742 1860306..1861232 1 NC_012947.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1861232 motB 8157742 motB Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar motor protein MotB YP_003035985.1 1860306 D 866768 CDS YP_003035986.1 253773155 8157743 1861237..1863201 1 NC_012947.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 1863201 8157743 ECBD_1750 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chemotaxis protein CheA YP_003035986.1 1861237 D 866768 CDS YP_003035987.1 253773156 8157744 1863222..1863725 1 NC_012947.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ssn:SSON_1230 purine-binding chemotaxis protein; purine-binding chemotaxis protein 1863725 8157744 ECBD_1751 Escherichia coli 'BL21-Gold(DE3)pLysS AG' purine-binding chemotaxis protein YP_003035987.1 1863222 D 866768 CDS YP_003035988.1 253773157 8158162 1863870..1865531 1 NC_012947.1 PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; ligand binding Tar domain protein; KEGG: ssn:SSON_1231 methyl-accepting chemotaxis protein II; methyl-accepting chemotaxis sensory transducer 1865531 8158162 ECBD_1752 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyl-accepting chemotaxis sensory transducer YP_003035988.1 1863870 D 866768 CDS YP_003035989.1 253773158 8158163 1865577..1867178 1 NC_012947.1 mediates taxis toward dipeptides; methyl-accepting protein IV 1867178 8158163 ECBD_1753 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyl-accepting protein IV YP_003035989.1 1865577 D 866768 CDS YP_003035990.1 253773159 8158164 1867197..1868057 1 NC_012947.1 methylates the MCP; chemotaxis methyltransferase CheR 1868057 8158164 ECBD_1754 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chemotaxis methyltransferase CheR YP_003035990.1 1867197 D 866768 CDS YP_003035991.1 253773160 8158165 1868060..1869109 1 NC_012947.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1869109 8158165 ECBD_1755 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chemotaxis-specific methylesterase YP_003035991.1 1868060 D 866768 CDS YP_003035992.1 253773161 8158166 1869124..1869513 1 NC_012947.1 chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY 1869513 8158166 ECBD_1756 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chemotaxis regulatory protein CheY YP_003035992.1 1869124 D 866768 CDS YP_003035993.1 253773162 8158167 1869524..1870168 1 NC_012947.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1870168 8158167 ECBD_1757 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chemotaxis regulator CheZ YP_003035993.1 1869524 D 866768 CDS YP_003035994.1 253773163 8158168 1870370..1871518 1 NC_012947.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1871518 flhB 8158168 flhB Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis protein FlhB YP_003035994.1 1870370 D 866768 CDS YP_003035995.1 253773164 8158169 1871511..1873589 1 NC_012947.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1873589 flhA 8158169 flhA Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar biosynthesis protein FlhA YP_003035995.1 1871511 D 866768 CDS YP_003035996.1 253773165 8158170 1873589..1873981 1 NC_012947.1 PFAM: flagellar FlhE family protein; KEGG: sbc:SbBS512_E2171 flagellar protein FlhE; flagellar FlhE family protein 1873981 8158170 ECBD_1760 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar FlhE family protein YP_003035996.1 1873589 D 866768 CDS YP_003035997.1 253773166 8158171 complement(1874101..1874589) 1 NC_012947.1 PFAM: protein of unknown function DUF1311; KEGG: sbo:SBO_1123 hypothetical protein; hypothetical protein 1874589 8158171 ECBD_1761 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035997.1 1874101 R 866768 CDS YP_003035998.1 253773167 8158172 complement(1874766..1876499) 1 NC_012947.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1876499 argS 8158172 argS Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginyl-tRNA synthetase YP_003035998.1 1874766 R 866768 CDS YP_003035999.1 253773168 8158173 1876715..1877281 1 NC_012947.1 PFAM: protein of unknown function DUF991; hypothetical protein 1877281 8158173 ECBD_1763 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003035999.1 1876715 D 866768 CDS YP_003036000.1 253773169 8158174 1877295..1878041 1 NC_012947.1 PFAM: CutC family protein; KEGG: elf:LF82_0392 copper homeostasis protein CutC; copper homeostasis protein CutC 1878041 8158174 ECBD_1764 Escherichia coli 'BL21-Gold(DE3)pLysS AG' copper homeostasis protein CutC YP_003036000.1 1877295 D 866768 CDS YP_003036001.1 253773170 8158175 1878429..1879529 1 NC_012947.1 PFAM: NapC/NirT cytochrome C domain protein; KEGG: sfv:SFV_1911 cytochrome C protein; NapC/NirT cytochrome C domain protein 1879529 8158175 ECBD_1765 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NapC/NirT cytochrome C domain protein YP_003036001.1 1878429 D 866768 CDS YP_003036002.1 253773171 8158176 1879554..1881983 1 NC_012947.1 TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 1881983 8158176 ECBD_1766 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_003036002.1 1879554 D 866768 CDS YP_003036003.1 253773172 8158177 complement(1882148..1883119) 1 NC_012947.1 TIGRFAM: methyltransferase; PFAM: methyltransferase; methyltransferase 1883119 8158177 ECBD_1767 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase YP_003036003.1 1882148 R 866768 CDS YP_003036004.1 253773173 8158178 complement(1883116..1883859) 1 NC_012947.1 TIGRFAM: methyltransferase; PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: sdy:SDY_1169 hypothetical protein; methyltransferase 1883859 8158178 ECBD_1768 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase YP_003036004.1 1883116 R 866768 CDS YP_003036005.1 253773174 8158179 complement(1883900..1884295) 1 NC_012947.1 KEGG: sdy:SDY_1168 hypothetical protein; hypothetical protein 1884295 8158179 ECBD_1769 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036005.1 1883900 R 866768 CDS YP_003036006.1 253773175 8158180 complement(1884348..1885166) 1 NC_012947.1 PFAM: protein of unknown function DUF72; hypothetical protein 1885166 8158180 ECBD_1770 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036006.1 1884348 R 866768 CDS YP_003036007.1 253773176 8158181 complement(1885163..1885729) 1 NC_012947.1 PFAM: isochorismatase hydrolase; KEGG: elf:LF82_2940 isochorismatase family protein YecD; hypothetical protein 1885729 8158181 ECBD_1771 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036007.1 1885163 R 866768 CDS YP_003036008.1 253773177 8158182 1886039..1887811 1 NC_012947.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1887811 aspS 8158182 aspS Escherichia coli 'BL21-Gold(DE3)pLysS AG' aspartyl-tRNA synthetase YP_003036008.1 1886039 D 866768 CDS YP_003036009.1 253773178 8158183 1887872..1888381 1 NC_012947.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 1888381 ntpA 8158183 ntpA Escherichia coli 'BL21-Gold(DE3)pLysS AG' dATP pyrophosphohydrolase YP_003036009.1 1887872 D 866768 CDS YP_003036010.1 253773179 8158184 1888410..1889150 1 NC_012947.1 PFAM: protein of unknown function DUF28; KEGG: efe:EFER_1208 hypothetical protein; hypothetical protein 1889150 8158184 ECBD_1774 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036010.1 1888410 D 866768 CDS YP_003036011.1 253773180 8158185 1889185..1889706 1 NC_012947.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1889706 ruvC 8158185 ruvC Escherichia coli 'BL21-Gold(DE3)pLysS AG' Holliday junction resolvase YP_003036011.1 1889185 D 866768 CDS YP_003036012.1 253773181 8158186 complement(1889708..1890310) 1 NC_012947.1 PFAM: protein of unknown function DUF1105; KEGG: ssn:SSON_1279 hypothetical protein; hypothetical protein 1890310 8158186 ECBD_1776 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036012.1 1889708 R 866768 CDS YP_003036013.1 253773182 8158187 1890585..1891196 1 NC_012947.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1891196 ruvA 8158187 ruvA Escherichia coli 'BL21-Gold(DE3)pLysS AG' Holliday junction DNA helicase RuvA YP_003036013.1 1890585 D 866768 CDS YP_003036014.1 253773183 8158188 1891205..1892215 1 NC_012947.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1892215 ruvB 8158188 ruvB Escherichia coli 'BL21-Gold(DE3)pLysS AG' Holliday junction DNA helicase RuvB YP_003036014.1 1891205 D 866768 CDS YP_003036015.1 253773184 8158189 complement(1892556..1893341) 1 NC_012947.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane component 1893341 znuB 8158189 znuB Escherichia coli 'BL21-Gold(DE3)pLysS AG' high-affinity zinc transporter membrane component YP_003036015.1 1892556 R 866768 CDS YP_003036016.1 253773185 8158190 complement(1893338..1894093) 1 NC_012947.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1894093 znuC 8158190 znuC Escherichia coli 'BL21-Gold(DE3)pLysS AG' high-affinity zinc transporter ATPase YP_003036016.1 1893338 R 866768 CDS YP_003036017.1 253773186 8158191 1894157..1895104 1 NC_012947.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic component 1895104 znuA 8158191 znuA Escherichia coli 'BL21-Gold(DE3)pLysS AG' high-affinity zinc transporter periplasmic component YP_003036017.1 1894157 D 866768 CDS YP_003036018.1 253773187 8158192 1895120..1896442 1 NC_012947.1 PFAM: peptidase M23; peptidoglycan-binding LysM; Opacity-associated protein A; Opacity-associated protein A domain protein; SMART: peptidoglycan-binding LysM; KEGG: sfx:S1932 hypothetical protein; hypothetical protein 1896442 8158192 ECBD_1782 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036018.1 1895120 D 866768 CDS YP_003036019.1 253773188 8158193 1896562..1897533 1 NC_012947.1 transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1897533 8158193 ECBD_1783 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_003036019.1 1896562 D 866768 CDS YP_003036020.1 253773189 8158194 complement(1897664..1899106) 1 NC_012947.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1899106 8158194 ECBD_1784 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvate kinase YP_003036020.1 1897664 R 866768 CDS YP_003036021.1 253773190 8158195 complement(1899234..1900103) 1 NC_012947.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1900103 8158195 ECBD_1785 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator HexR YP_003036021.1 1899234 R 866768 CDS YP_003036022.1 253773191 8158196 1900126..1900275 1 NC_012947.1 KEGG: sbc:SbBS512_E2128 hypothetical protein; hypothetical protein 1900275 8158196 ECBD_1786 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036022.1 1900126 D 866768 CDS YP_003036023.1 253773192 8158197 1900441..1901916 1 NC_012947.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1901916 8158197 ECBD_1787 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucose-6-phosphate 1-dehydrogenase YP_003036023.1 1900441 D 866768 CDS YP_003036024.1 253773193 8158198 1902151..1903962 1 NC_012947.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1903962 8158198 ECBD_1788 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphogluconate dehydratase YP_003036024.1 1902151 D 866768 CDS YP_003036025.1 253773194 8158199 1903999..1904640 1 NC_012947.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1904640 8158199 ECBD_1789 Escherichia coli 'BL21-Gold(DE3)pLysS AG' keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_003036025.1 1903999 D 866768 CDS YP_003036026.1 253773195 8158200 complement(1904696..1905874) 1 NC_012947.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1905874 purT 8158200 purT Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribosylglycinamide formyltransferase 2 YP_003036026.1 1904696 R 866768 CDS YP_003036027.1 253773196 8158201 1906008..1906298 1 NC_012947.1 PFAM: YebG family protein; KEGG: sdy:SDY_1134 DNA damage-inducible protein YebG; DNA damage-inducible protein YebG 1906298 8158201 ECBD_1791 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA damage-inducible protein YebG YP_003036027.1 1906008 D 866768 CDS YP_003036028.1 253773197 8158202 1906365..1906721 1 NC_012947.1 secreted protein; unknown function; hypothetical protein 1906721 8158202 ECBD_1792 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036028.1 1906365 D 866768 CDS YP_003036029.1 253773198 8158203 complement(1906878..1906988) 1 NC_012947.1 hypothetical protein 1906988 8158203 ECBD_1793 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036029.1 1906878 R 866768 CDS YP_003036030.1 253773199 8158204 1907048..1907707 1 NC_012947.1 PFAM: protein of unknown function DUF533; KEGG: ssn:SSON_1302 hypothetical protein; hypothetical protein 1907707 8158204 ECBD_1794 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036030.1 1907048 D 866768 CDS YP_003036031.1 253773200 8158205 1907916..1909976 1 NC_012947.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 1909976 8158205 ECBD_1795 Escherichia coli 'BL21-Gold(DE3)pLysS AG' protease 2 YP_003036031.1 1907916 D 866768 CDS YP_003036032.1 253773201 8158206 complement(1909973..1910635) 1 NC_012947.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1910635 8158206 ECBD_1796 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exodeoxyribonuclease X YP_003036032.1 1909973 R 866768 CDS YP_003036033.1 253773202 8158207 complement(1910659..1911315) 1 NC_012947.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbc:SbBS512_E2118 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1911315 8158207 ECBD_1797 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003036033.1 1910659 R 866768 CDS YP_003036034.1 253773203 8158208 complement(1911417..1911647) 1 NC_012947.1 PFAM: DNA polymerase II subunit beta; KEGG: sdy:SDY_1128 DNA polymerase III subunit theta; DNA polymerase III subunit theta 1911647 8158208 ECBD_1798 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunit theta YP_003036034.1 1911417 R 866768 CDS YP_003036035.1 253773204 8158209 1911786..1912160 1 NC_012947.1 PFAM: copper resistance protein CopC; KEGG: sbc:SbBS512_E2116 copper resistance protein CopC; hypothetical protein 1912160 8158209 ECBD_1799 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036035.1 1911786 D 866768 CDS YP_003036036.1 253773205 8158210 1912164..1913036 1 NC_012947.1 PFAM: copper resistance D domain protein; KEGG: sbc:SbBS512_E2115 copper resistance protein D; copper resistance D domain protein 1913036 8158210 ECBD_1800 Escherichia coli 'BL21-Gold(DE3)pLysS AG' copper resistance D domain protein YP_003036036.1 1912164 D 866768 CDS YP_003036037.1 253773206 8158211 1913049..1913390 1 NC_012947.1 KEGG: sdy:SDY_1125 hypothetical protein; hypothetical protein 1913390 8158211 ECBD_1801 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036037.1 1913049 D 866768 CDS YP_003036038.1 253773207 8158212 1913785..1914441 1 NC_012947.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 1914441 pphA 8158212 pphA Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine/threonine protein phosphatase 1 YP_003036038.1 1913785 D 866768 CDS YP_003036039.1 253773208 8158213 complement(1914442..1914717) 1 NC_012947.1 PFAM: protein of unknown function DUF1482; KEGG: ssn:SSON_1324 hypothetical protein; hypothetical protein 1914717 8158213 ECBD_1803 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036039.1 1914442 R 866768 CDS YP_003036040.1 253773209 8158214 complement(1914738..1914974) 1 NC_012947.1 PFAM: protein of unknown function DUF1480; KEGG: sfv:SFV_1392 hypothetical protein; hypothetical protein 1914974 8158214 ECBD_1804 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036040.1 1914738 R 866768 CDS YP_003036041.1 253773210 8158215 complement(1915092..1916537) 1 NC_012947.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1916537 yebU 8158215 yebU Escherichia coli 'BL21-Gold(DE3)pLysS AG' rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_003036041.1 1915092 R 866768 CDS YP_003036042.1 253773211 8158216 complement(1916611..1919244) 1 NC_012947.1 PFAM: hypothetical protein; KEGG: ssn:SSON_1327 hypothetical protein; hypothetical protein 1919244 8158216 ECBD_1806 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036042.1 1916611 R 866768 CDS YP_003036043.1 253773212 8158217 complement(1919213..1920496) 1 NC_012947.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: paraquat-inducible protein A; KEGG: sbo:SBO_1248 hypothetical protein; integral membrane protein, PqiA family 1920496 8158217 ECBD_1807 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integral membrane protein, PqiA family YP_003036043.1 1919213 R 866768 CDS YP_003036044.1 253773213 8158218 1920572..1921123 1 NC_012947.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: sdy:SDY_1980 hypothetical protein; GAF sensor protein 1921123 8158218 ECBD_1808 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GAF sensor protein YP_003036044.1 1920572 D 866768 CDS YP_003036045.1 253773214 8158219 1921220..1921918 1 NC_012947.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1921918 8158219 ECBD_1809 Escherichia coli 'BL21-Gold(DE3)pLysS AG' solute/DNA competence effector YP_003036045.1 1921220 D 866768 CDS YP_003036046.1 253773215 8158220 1921938..1923986 1 NC_012947.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1923986 8158220 ECBD_1810 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxy-terminal protease YP_003036046.1 1921938 D 866768 CDS YP_003036047.1 253773216 8158221 1924178..1925059 1 NC_012947.1 metalloprotease; heat shock protein HtpX 1925059 8158221 ECBD_1811 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat shock protein HtpX YP_003036047.1 1924178 D 866768 CDS YP_003036048.1 253773217 8158222 complement(1925105..1926478) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2096 transporter major facilitator family; major facilitator superfamily MFS_1 1926478 8158222 ECBD_1812 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003036048.1 1925105 R 866768 CDS YP_003036049.1 253773218 8158223 1926655..1927446 1 NC_012947.1 PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: sbc:SbBS512_E2095 transcriptional regulator KdgR; transcriptional regulator, IclR family 1927446 8158223 ECBD_1813 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator, IclR family YP_003036049.1 1926655 D 866768 CDS YP_003036050.1 253773219 8158224 complement(1927589..1927828) 1 NC_012947.1 KEGG: sdy:SDY_1974 hypothetical protein; hypothetical protein 1927828 8158224 ECBD_1814 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036050.1 1927589 R 866768 CDS YP_003036051.1 253773220 8158225 1927987..1928130 1 NC_012947.1 KEGG: sdy:SDY_1973 hypothetical protein; hypothetical protein 1928130 8158225 ECBD_1815 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036051.1 1927987 D 866768 CDS YP_003036052.1 253773221 8158226 1928205..1928492 1 NC_012947.1 KEGG: elf:LF82_2929 uncharacterized protein YebO; hypothetical protein 1928492 8158226 ECBD_1816 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036052.1 1928205 D 866768 CDS YP_003036053.1 253773222 8158227 1929161..1929304 1 NC_012947.1 KEGG: sdy:SDY_1970 hypothetical protein; hypothetical protein 1929304 8158227 ECBD_1817 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036053.1 1929161 D 866768 CDS YP_003036054.1 253773223 8158228 1929317..1929526 1 NC_012947.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sed:SeD_A1478 cold shock protein CspC; cold shock-like protein CspC 1929526 8158228 ECBD_1818 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cold shock-like protein CspC YP_003036054.1 1929317 D 866768 CDS YP_003036055.1 253773224 8158229 1929692..1930501 1 NC_012947.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 1930501 rrmA 8158229 rrmA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA methyltransferase A YP_003036055.1 1929692 D 866768 CDS YP_003036056.1 253773225 8158230 complement(1930498..1931064) 1 NC_012947.1 membrane protein YebN; hypothetical protein 1931064 8158230 ECBD_1820 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036056.1 1930498 R 866768 CDS YP_003036057.1 253773226 8158231 complement(1931493..1931951) 1 NC_012947.1 PFAM: protein of unknown function DUF986; KEGG: ssn:SSON_1340 hypothetical protein; hypothetical protein 1931951 8158231 ECBD_1821 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036057.1 1931493 R 866768 CDS YP_003036058.1 253773227 8158232 complement(1932006..1932857) 1 NC_012947.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1932857 8158232 ECBD_1822 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system mannose-specific transporter subunit IID YP_003036058.1 1932006 R 866768 CDS YP_003036059.1 253773228 8158233 complement(1932870..1933670) 1 NC_012947.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: sbc:SbBS512_E2084 PTS system, mannose-specific IIC component; PTS system, mannose/fructose/sorbose family, IIC subunit 1933670 8158233 ECBD_1823 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, mannose/fructose/sorbose family, IIC subunit YP_003036059.1 1932870 R 866768 CDS YP_003036060.1 253773229 8158234 complement(1933733..1934704) 1 NC_012947.1 KEGG: ssn:SSON_1343 PTS enzyme IIAB, mannose-specific; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component; PTS system, mannose/fructose/sorbose family, IIA subunit 1934704 8158234 ECBD_1824 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, mannose/fructose/sorbose family, IIA subunit YP_003036060.1 1933733 R 866768 CDS YP_003036061.1 253773230 8158235 1934970..1935179 1 NC_012947.1 KEGG: stm:STM1829 cytoplasmic protein; cytoplasmic protein 1935179 8158235 ECBD_1825 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic protein YP_003036061.1 1934970 D 866768 CDS YP_003036062.1 253773231 8158236 1935167..1936723 1 NC_012947.1 PFAM: integral membrane protein TerC; CBS domain containing protein; transporter-associated region; integral membrane protein TerC 1936723 8158236 ECBD_1826 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integral membrane protein TerC YP_003036062.1 1935167 D 866768 CDS YP_003036063.1 253773232 8158237 complement(1936727..1938325) 1 NC_012947.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: ssn:SSON_1345 hypothetical protein; diguanylate phosphodiesterase 1938325 8158237 ECBD_1827 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate phosphodiesterase YP_003036063.1 1936727 R 866768 CDS YP_003036064.1 253773233 8158238 complement(1938456..1939820) 1 NC_012947.1 KEGG: sbo:SBO_1270 L-serine deaminase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1939820 8158238 ECBD_1828 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-serine dehydratase YP_003036064.1 1938456 R 866768 CDS YP_003036065.1 253773234 8158239 complement(1940004..1940582) 1 NC_012947.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_1719 hypothetical protein; hypothetical protein 1940582 8158239 ECBD_1829 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036065.1 1940004 R 866768 CDS YP_003036066.1 253773235 8158240 complement(1940586..1941947) 1 NC_012947.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein; KEGG: ssn:SSON_1348 p-aminobenzoate synthetase, component I; para-aminobenzoate synthase, subunit I 1941947 8158240 ECBD_1830 Escherichia coli 'BL21-Gold(DE3)pLysS AG' para-aminobenzoate synthase, subunit I YP_003036066.1 1940586 R 866768 CDS YP_003036067.1 253773236 8158995 1942021..1942200 1 NC_012947.1 KEGG: ssn:SSON_1349 hypothetical protein; hypothetical protein 1942200 8158995 ECBD_1831 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036067.1 1942021 D 866768 CDS YP_003036068.1 253773237 8158909 complement(1942320..1942643) 1 NC_012947.1 KEGG: sfv:SFV_1419 hypothetical protein; hypothetical protein 1942643 8158909 ECBD_1832 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036068.1 1942320 R 866768 CDS YP_003036069.1 253773238 8158910 complement(1943042..1943389) 1 NC_012947.1 KEGG: ssn:SSON_1352 hypothetical protein; hypothetical protein 1943389 8158910 ECBD_1833 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036069.1 1943042 R 866768 CDS YP_003036070.1 253773239 8158911 1943518..1945428 1 NC_012947.1 KEGG: sbo:SBO_1280 enzyme; enzyme 1945428 8158911 ECBD_1834 Escherichia coli 'BL21-Gold(DE3)pLysS AG' enzyme YP_003036070.1 1943518 D 866768 CDS YP_003036071.1 253773240 8158912 1945486..1946181 1 NC_012947.1 KEGG: sfv:SFV_1422 hypothetical protein; hypothetical protein 1946181 8158912 ECBD_1835 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036071.1 1945486 D 866768 CDS YP_003036072.1 253773241 8158913 1946221..1946802 1 NC_012947.1 TIGRFAM: outer membrane lipoprotein, Slp family; KEGG: sfv:SFV_1423 outer membrane protein; outer membrane lipoprotein, Slp family 1946802 8158913 ECBD_1836 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein, Slp family YP_003036072.1 1946221 D 866768 CDS YP_003036073.1 253773242 8158914 1946941..1948692 1 NC_012947.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1948692 8158914 ECBD_1837 Escherichia coli 'BL21-Gold(DE3)pLysS AG' long-chain-fatty-acid--CoA ligase YP_003036073.1 1946941 D 866768 CDS YP_003036074.1 253773243 8158915 1948774..1949889 1 NC_012947.1 TIGRFAM: ribonuclease D; ribonuclease D 1949889 8158915 ECBD_1838 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease D YP_003036074.1 1948774 D 866768 CDS YP_003036075.1 253773244 8158916 complement(1949943..1950908) 1 NC_012947.1 KEGG: sbo:SBO_1285 diogenase subunit beta; diogenase subunit beta 1950908 8158916 ECBD_1839 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diogenase subunit beta YP_003036075.1 1949943 R 866768 CDS YP_003036076.1 253773245 8158917 complement(1950964..1952088) 1 NC_012947.1 KEGG: ssn:SSON_1359 hypothetical protein; hypothetical protein 1952088 8158917 ECBD_1840 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036076.1 1950964 R 866768 CDS YP_003036077.1 253773246 8158919 complement(1953756..1954841) 1 NC_012947.1 TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1954841 8158919 ECBD_1842 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tartrate dehydrogenase YP_003036077.1 1953756 R 866768 CDS YP_003036078.1 253773247 8158920 1954944..1955867 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_1289 transcriptional regulator LysR-type; LysR family transcriptional regulator 1955867 8158920 ECBD_1843 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003036078.1 1954944 D 866768 CDS YP_003036079.1 253773248 8158921 1955994..1956632 1 NC_012947.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: ssn:SSON_1363 leucine export protein LeuE; leucine export protein LeuE 1956632 8158921 ECBD_1844 Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucine export protein LeuE YP_003036079.1 1955994 D 866768 CDS YP_003036080.1 253773249 8158924 1958289..1958513 1 NC_012947.1 PFAM: protein of unknown function DUF1971; KEGG: sdy:SDY_1697 hypothetical protein; hypothetical protein 1958513 8158924 ECBD_1847 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036080.1 1958289 D 866768 CDS YP_003036081.1 253773250 8158925 1958517..1958699 1 NC_012947.1 PFAM: Domain of unknown function DUF1869; KEGG: ssn:SSON_1365 hypothetical protein; hypothetical protein 1958699 8158925 ECBD_1848 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036081.1 1958517 D 866768 CDS YP_003036082.1 253773251 8158926 1958716..1958835 1 NC_012947.1 hypothetical protein 1958835 8158926 ECBD_1849 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036082.1 1958716 D 866768 CDS YP_003036083.1 253773252 8158927 1958847..1959095 1 NC_012947.1 PFAM: transglycosylase; KEGG: sdy:SDY_1695 hypothetical protein; hypothetical protein 1959095 8158927 ECBD_1850 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036083.1 1958847 D 866768 CDS YP_003036084.1 253773253 8158928 complement(1959362..1960387) 1 NC_012947.1 KEGG: sdy:SDY_1692 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein; diguanylate cyclase with GAF sensor 1960387 8158928 ECBD_1851 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase with GAF sensor YP_003036084.1 1959362 R 866768 CDS YP_003036085.1 253773254 8158929 1960570..1960824 1 NC_012947.1 PFAM: protein of unknown function DUF333; KEGG: sbc:SbBS512_E2046 lipoprotein; hypothetical protein 1960824 8158929 ECBD_1852 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036085.1 1960570 D 866768 CDS YP_003036086.1 253773255 8158930 complement(1960846..1961193) 1 NC_012947.1 PFAM: protein of unknown function DUF488; KEGG: ssn:SSON_1369 hypothetical protein; hypothetical protein 1961193 8158930 ECBD_1853 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036086.1 1960846 R 866768 CDS YP_003036087.1 253773256 8158931 complement(1961248..1962429) 1 NC_012947.1 TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1302 amino acid/amine transport protein; cyanate transporter 1962429 8158931 ECBD_1854 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cyanate transporter YP_003036087.1 1961248 R 866768 CDS YP_003036088.1 253773257 8158932 1962529..1963347 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sdy:SDY_1688 AraC-type regulatory protein; AraC family transcriptional regulator 1963347 8158932 ECBD_1855 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003036088.1 1962529 D 866768 CDS YP_003036089.1 253773258 8158933 complement(1963304..1963750) 1 NC_012947.1 PFAM: protein of unknown function DUF441; KEGG: sbo:SBO_1304 hypothetical protein; hypothetical protein 1963750 8158933 ECBD_1856 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036089.1 1963304 R 866768 CDS YP_003036090.1 253773259 8158934 complement(1964025..1964528) 1 NC_012947.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: elf:LF82_2911 uncharacterized protein YeaK; YbaK/prolyl-tRNA synthetase associated region 1964528 8158934 ECBD_1857 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YbaK/prolyl-tRNA synthetase associated region YP_003036090.1 1964025 R 866768 CDS YP_003036091.1 253773260 8158935 complement(1964571..1966061) 1 NC_012947.1 KEGG: elf:LF82_2910 uncharacterized protein YeaJ; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1966061 8158935 ECBD_1858 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase YP_003036091.1 1964571 R 866768 CDS YP_003036092.1 253773261 8158936 complement(1966242..1967717) 1 NC_012947.1 KEGG: ssn:SSON_1377 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1967717 8158936 ECBD_1859 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase YP_003036092.1 1966242 R 866768 CDS YP_003036093.1 253773262 8158937 complement(1967864..1969147) 1 NC_012947.1 PFAM: protein of unknown function DUF444; KEGG: sbo:SBO_1309 hypothetical protein; hypothetical protein 1969147 8158937 ECBD_1860 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036093.1 1967864 R 866768 CDS YP_003036094.1 253773263 8158939 1971630..1972376 1 NC_012947.1 PFAM: MltA-interacting MipA family protein; KEGG: ssn:SSON_1380 hypothetical protein; MltA-interacting MipA family protein 1972376 8158939 ECBD_1862 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MltA-interacting MipA family protein YP_003036094.1 1971630 D 866768 CDS YP_003036095.1 253773264 8158940 1972466..1973320 1 NC_012947.1 PFAM: aldo/keto reductase; aldo/keto reductase 1973320 8158940 ECBD_1863 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldo/keto reductase YP_003036095.1 1972466 D 866768 CDS YP_003036096.1 253773265 8158941 complement(1973368..1974252) 1 NC_012947.1 PFAM: aldose 1-epimerase; KEGG: sfv:SFV_1435 hypothetical protein; aldose 1-epimerase 1974252 8158941 ECBD_1864 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldose 1-epimerase YP_003036096.1 1973368 R 866768 CDS YP_003036097.1 253773266 8158942 complement(1974336..1975331) 1 NC_012947.1 KEGG: ssn:SSON_1384 glyceraldehyde-3-phosphate dehydrogenase A; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1975331 8158942 ECBD_1865 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glyceraldehyde-3-phosphate dehydrogenase YP_003036097.1 1974336 R 866768 CDS YP_003036098.1 253773267 8158943 1975673..1976086 1 NC_012947.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1976086 8158943 ECBD_1866 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methionine sulfoxide reductase B YP_003036098.1 1975673 D 866768 CDS YP_003036099.1 253773268 8158944 1976128..1976400 1 NC_012947.1 PFAM: protein of unknown function DUF1315; KEGG: sfv:SFV_1438 hypothetical protein; hypothetical protein 1976400 8158944 ECBD_1867 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036099.1 1976128 D 866768 CDS YP_003036100.1 253773269 8158945 1976770..1977846 1 NC_012947.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: elf:LF82_2898 uncharacterized zinc-type alcohol dehydrogenase-like; alcohol dehydrogenase zinc-binding domain protein 1977846 8158945 ECBD_1868 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase zinc-binding domain protein YP_003036100.1 1976770 D 866768 CDS YP_003036101.1 253773270 8158946 1977873..1979252 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: sdy:SDY_1492 transporter; major facilitator superfamily MFS_1 1979252 8158946 ECBD_1869 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003036101.1 1977873 D 866768 CDS YP_003036102.1 253773271 8158947 1979269..1980312 1 NC_012947.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: elf:LF82_2896 uncharacterized zinc-type alcohol dehydrogenase-like; alcohol dehydrogenase zinc-binding domain protein 1980312 8158947 ECBD_1870 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase zinc-binding domain protein YP_003036102.1 1979269 D 866768 CDS YP_003036103.1 253773272 8158948 1980333..1981169 1 NC_012947.1 TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; ketose-bisphosphate aldolase 1981169 8158948 ECBD_1871 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ketose-bisphosphate aldolase YP_003036103.1 1980333 D 866768 CDS YP_003036104.1 253773273 8158949 1981174..1982121 1 NC_012947.1 PFAM: PfkB domain protein; PfkB domain protein 1982121 8158949 ECBD_1872 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PfkB domain protein YP_003036104.1 1981174 D 866768 CDS YP_003036105.1 253773274 8158950 1982131..1983111 1 NC_012947.1 PFAM: aldo/keto reductase; KEGG: sfv:SFV_1444 hypothetical protein; aldo/keto reductase 1983111 8158950 ECBD_1873 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldo/keto reductase YP_003036105.1 1982131 D 866768 CDS YP_003036106.1 253773275 8158951 1983248..1984006 1 NC_012947.1 PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: elf:LF82_2892 uncharacterized HTH-type transcriptional regulator; DeoR family transcriptional regulator 1984006 8158951 ECBD_1874 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DeoR family transcriptional regulator YP_003036106.1 1983248 D 866768 CDS YP_003036107.1 253773276 8158952 1984124..1985482 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: elf:LF82_2891 inner membrane metabolite transport protein YdjE; major facilitator superfamily MFS_1 1985482 8158952 ECBD_1875 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003036107.1 1984124 D 866768 CDS YP_003036108.1 253773277 8158953 complement(1985575..1986216) 1 NC_012947.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 1986216 8158953 ECBD_1876 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nicotinamidase/pyrazinamidase YP_003036108.1 1985575 R 866768 CDS YP_003036109.1 253773278 8158954 complement(1986227..1987243) 1 NC_012947.1 converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 1987243 ansA 8158954 ansA Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic asparaginase I YP_003036109.1 1986227 R 866768 CDS YP_003036110.1 253773279 8158955 complement(1987410..1989266) 1 NC_012947.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 1989266 8158955 ECBD_1878 Escherichia coli 'BL21-Gold(DE3)pLysS AG' protease 4 YP_003036110.1 1987410 R 866768 CDS YP_003036111.1 253773280 8158956 1989427..1989978 1 NC_012947.1 PFAM: nitroreductase; KEGG: sbo:SBO_1322 hypothetical protein; hypothetical protein 1989978 8158956 ECBD_1879 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036111.1 1989427 D 866768 CDS YP_003036112.1 253773281 8158957 1990095..1991138 1 NC_012947.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1991138 8158957 ECBD_1880 Escherichia coli 'BL21-Gold(DE3)pLysS AG' selenophosphate synthetase YP_003036112.1 1990095 D 866768 CDS YP_003036113.1 253773282 8158958 1991143..1993104 1 NC_012947.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1993104 8158958 ECBD_1881 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA topoisomerase III YP_003036113.1 1991143 D 866768 CDS YP_003036114.1 253773283 8158959 1993232..1994272 1 NC_012947.1 KEGG: sfl:SF1461 hypothetical protein; hypothetical protein 1994272 8158959 ECBD_1882 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036114.1 1993232 D 866768 CDS YP_003036115.1 253773284 8158960 complement(1994389..1995732) 1 NC_012947.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1995732 8158960 ECBD_1883 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate dehydrogenase YP_003036115.1 1994389 R 866768 CDS YP_003036116.1 253773285 8158961 1995968..1996240 1 NC_012947.1 PFAM: protein of unknown function DUF1496; KEGG: sbc:SbBS512_E2012 hypothetical protein; hypothetical protein 1996240 8158961 ECBD_1884 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036116.1 1995968 D 866768 CDS YP_003036117.1 253773286 8158962 complement(1996206..1996613) 1 NC_012947.1 PFAM: NUDIX hydrolase; KEGG: elf:LF82_1533 CTP pyrophosphohydrolase; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1996613 8158962 ECBD_1885 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_003036117.1 1996206 R 866768 CDS YP_003036118.1 253773287 8158963 1996700..1997320 1 NC_012947.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sfx:S1582 cytochrome oxidase; CDP-alcohol phosphatidyltransferase 1997320 8158963 ECBD_1886 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CDP-alcohol phosphatidyltransferase YP_003036118.1 1996700 D 866768 CDS YP_003036119.1 253773288 8158964 complement(1997329..1998636) 1 NC_012947.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: sbo:SBO_1332 thiosulfate sulfur transferase; rhodanese 1998636 8158964 ECBD_1887 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rhodanese YP_003036119.1 1997329 R 866768 CDS YP_003036120.1 253773289 8158965 complement(1998703..1999356) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfv:SFV_1462 ATP-binding component of a transporter; ABC transporter 1999356 8158965 ECBD_1888 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003036120.1 1998703 R 866768 CDS YP_003036121.1 253773290 8158966 complement(1999356..2000891) 1 NC_012947.1 KEGG: sbc:SbBS512_E2004 ABC transporter permease protein; ABC transporter permease 2000891 8158966 ECBD_1889 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter permease YP_003036121.1 1999356 R 866768 CDS YP_003036122.1 253773291 8158967 complement(2000864..2002030) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1403 hypothetical protein; ABC transporter substrate-binding protein 2002030 8158967 ECBD_1890 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter substrate-binding protein YP_003036122.1 2000864 R 866768 CDS YP_003036123.1 253773292 8158968 complement(2002040..2002588) 1 NC_012947.1 PFAM: carboxymuconolactone decarboxylase; KEGG: sbc:SbBS512_E2002 carboxymuconolactone decarboxylase family protein; carboxymuconolactone decarboxylase 2002588 8158968 ECBD_1891 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxymuconolactone decarboxylase YP_003036123.1 2002040 R 866768 CDS YP_003036124.1 253773293 8158969 complement(2002588..2003295) 1 NC_012947.1 PFAM: SNARE associated Golgi protein; KEGG: elf:LF82_2903 UPF0043 inner membrane protein YdjZ; hypothetical protein 2003295 8158969 ECBD_1892 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036124.1 2002588 R 866768 CDS YP_003036125.1 253773294 8158970 complement(2003310..2003927) 1 NC_012947.1 KEGG: ssn:SSON_1406 hypothetical protein; hypothetical protein 2003927 8158970 ECBD_1893 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036125.1 2003310 R 866768 CDS YP_003036126.1 253773295 8158971 complement(2003955..2004665) 1 NC_012947.1 PFAM: SNARE associated Golgi protein; KEGG: ssn:SSON_1407 hypothetical protein; hypothetical protein 2004665 8158971 ECBD_1894 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036126.1 2003955 R 866768 CDS YP_003036127.1 253773296 8158972 complement(2004832..2005650) 1 NC_012947.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 2005650 8158972 ECBD_1895 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease III YP_003036127.1 2004832 R 866768 CDS YP_003036128.1 253773297 8158973 complement(2005651..2005821) 1 NC_012947.1 KEGG: sbc:SbBS512_E1996 hypothetical protein; hypothetical protein 2005821 8158973 ECBD_1896 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036128.1 2005651 R 866768 CDS YP_003036129.1 253773298 8158974 2006084..2007304 1 NC_012947.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 2007304 8158974 ECBD_1897 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional succinylornithine transaminase/acetylornithine transaminase YP_003036129.1 2006084 D 866768 CDS YP_003036130.1 253773299 8158975 2007301..2008335 1 NC_012947.1 TIGRFAM: arginine N-succinyltransferase; arginine/ornithine succinyltransferase subunit; PFAM: arginine N-succinyltransferase subunit beta; arginine succinyltransferase 2008335 8158975 ECBD_1898 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine succinyltransferase YP_003036130.1 2007301 D 866768 CDS YP_003036131.1 253773300 8158976 2008332..2009810 1 NC_012947.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 2009810 astD 8158976 astD Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinylglutamic semialdehyde dehydrogenase YP_003036131.1 2008332 D 866768 CDS YP_003036132.1 253773301 8158977 2009807..2011150 1 NC_012947.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2011150 8158977 ECBD_1900 Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinylarginine dihydrolase YP_003036132.1 2009807 D 866768 CDS YP_003036133.1 253773302 8158978 2011143..2012111 1 NC_012947.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2012111 8158978 ECBD_1901 Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinylglutamate desuccinylase YP_003036133.1 2011143 D 866768 CDS YP_003036134.1 253773303 8158979 2012441..2012926 1 NC_012947.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; periplasmic protein 2012926 8158979 ECBD_1902 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic protein YP_003036134.1 2012441 D 866768 CDS YP_003036135.1 253773304 8158980 2013129..2013704 1 NC_012947.1 PFAM: protein of unknown function DUF886; KEGG: sfv:SFV_1478 hypothetical protein; hypothetical protein 2013704 8158980 ECBD_1903 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036135.1 2013129 D 866768 CDS YP_003036136.1 253773305 8158981 complement(2013664..2014551) 1 NC_012947.1 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease 2014551 8158981 ECBD_1904 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleotide excision repair endonuclease YP_003036136.1 2013664 R 866768 CDS YP_003036137.1 253773306 8158982 complement(2014781..2015608) 1 NC_012947.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2015608 nadE 8158982 nadE Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD synthetase YP_003036137.1 2014781 R 866768 CDS YP_003036138.1 253773307 8158983 2015810..2016148 1 NC_012947.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 2016148 8158983 ECBD_1906 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator OsmE YP_003036138.1 2015810 D 866768 CDS YP_003036139.1 253773308 8158984 2016447..2016767 1 NC_012947.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 2016767 8158984 ECBD_1907 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_003036139.1 2016447 D 866768 CDS YP_003036140.1 253773309 8158985 2016852..2018210 1 NC_012947.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 2018210 8158985 ECBD_1908 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_003036140.1 2016852 D 866768 CDS YP_003036141.1 253773310 8158986 2018261..2018611 1 NC_012947.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 2018611 8158986 ECBD_1909 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_003036141.1 2018261 D 866768 CDS YP_003036142.1 253773311 8158987 2018622..2019461 1 NC_012947.1 represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 2019461 8158987 ECBD_1910 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator ChbR YP_003036142.1 2018622 D 866768 CDS YP_003036143.1 253773312 8158988 2019566..2020918 1 NC_012947.1 PFAM: glycoside hydrolase family 4; KEGG: elf:LF82_0293 6-phospho-beta-glucosidase; glycoside hydrolase family 4 2020918 8158988 ECBD_1911 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase family 4 YP_003036143.1 2019566 D 866768 CDS YP_003036144.1 253773313 8158989 2020931..2021680 1 NC_012947.1 PFAM: YdjC family protein; KEGG: ssn:SSON_1425 hypothetical protein; hypothetical protein 2021680 8158989 ECBD_1912 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036144.1 2020931 D 866768 CDS YP_003036145.1 253773314 8157181 complement(2021938..2024199) 1 NC_012947.1 catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 2024199 katE 8157181 katE Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydroperoxidase II YP_003036145.1 2021938 R 866768 CDS YP_003036146.1 253773315 8157182 2024382..2024645 1 NC_012947.1 KEGG: ssn:SSON_1427 cell division modulator; cell division modulator 2024645 8157182 ECBD_1914 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division modulator YP_003036146.1 2024382 D 866768 CDS YP_003036147.1 253773316 8157183 2024934..2025716 1 NC_012947.1 KEGG: sfl:SF1498 hypothetical protein; hypothetical protein 2025716 8157183 ECBD_1915 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036147.1 2024934 D 866768 CDS YP_003036148.1 253773317 8157184 complement(2025741..2027132) 1 NC_012947.1 PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 2027132 8157184 ECBD_1916 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sodium:dicarboxylate symporter YP_003036148.1 2025741 R 866768 CDS YP_003036149.1 253773318 8157185 complement(2027265..2027855) 1 NC_012947.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: sdy:SDY_1821 hypothetical protein; hypothetical protein 2027855 8157185 ECBD_1917 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036149.1 2027265 R 866768 CDS YP_003036150.1 253773319 8157186 complement(2028018..2028686) 1 NC_012947.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 2028686 8157186 ECBD_1918 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-deoxyglucose-6-phosphatase YP_003036150.1 2028018 R 866768 CDS YP_003036151.1 253773320 8157187 2028833..2029369 1 NC_012947.1 KEGG: ssn:SSON_1431 hypothetical protein; hypothetical protein 2029369 8157187 ECBD_1919 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036151.1 2028833 D 866768 CDS YP_003036152.1 253773321 8157188 complement(2029410..2030270) 1 NC_012947.1 PFAM: fructosamine kinase; aminoglycoside phosphotransferase; KEGG: sdy:SDY_1818 hypothetical protein; fructosamine kinase 2030270 8157188 ECBD_1920 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructosamine kinase YP_003036152.1 2029410 R 866768 CDS YP_003036153.1 253773322 8157189 complement(2030376..2030666) 1 NC_012947.1 KEGG: ssn:SSON_1433 hypothetical protein; hypothetical protein 2030666 8157189 ECBD_1921 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036153.1 2030376 R 866768 CDS YP_003036154.1 253773323 8157190 complement(2030767..2031696) 1 NC_012947.1 TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: ssn:SSON_1434 6-phosphofructokinase 2; 6-phosphofructokinase 2 2031696 8157190 ECBD_1922 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 6-phosphofructokinase 2 YP_003036154.1 2030767 R 866768 CDS YP_003036155.1 253773324 8157191 2031983..2032741 1 NC_012947.1 PFAM: protein of unknown function DUF481; KEGG: ssn:SSON_1435 hypothetical protein; hypothetical protein 2032741 8157191 ECBD_1923 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036155.1 2031983 D 866768 CDS YP_003036156.1 253773325 8157192 complement(2032794..2032901) 1 NC_012947.1 KEGG: ssn:SSON_1436 hypothetical protein; hypothetical protein 2032901 8157192 ECBD_1924 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036156.1 2032794 R 866768 CDS YP_003036157.1 253773326 8157194 2035494..2037422 1 NC_012947.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2037422 8157194 ECBD_1926 Escherichia coli 'BL21-Gold(DE3)pLysS AG' threonyl-tRNA synthetase YP_003036157.1 2035494 D 866768 CDS YP_003036158.1 253773327 8157195 2037426..2037968 1 NC_012947.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2037968 infC 8157195 infC Escherichia coli 'BL21-Gold(DE3)pLysS AG' translation initiation factor IF-3 YP_003036158.1 2037426 D 866768 CDS YP_003036159.1 253773328 8157196 2038065..2038262 1 NC_012947.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: sea:SeAg_B1838 50S ribosomal protein L35; 50S ribosomal protein L35 2038262 rpmI 8157196 rpmI Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L35 YP_003036159.1 2038065 D 866768 CDS YP_003036160.1 253773329 8157197 2038315..2038671 1 NC_012947.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2038671 rplT 8157197 rplT Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L20 YP_003036160.1 2038315 D 866768 CDS YP_003036161.1 253773330 8157198 2038913..2039008 1 NC_012947.1 hypothetical protein 2039008 8157198 ECBD_1930 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036161.1 2038913 D 866768 CDS YP_003036162.1 253773331 8157199 2039122..2040105 1 NC_012947.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2040105 pheS 8157199 pheS Escherichia coli 'BL21-Gold(DE3)pLysS AG' phenylalanyl-tRNA synthetase subunit alpha YP_003036162.1 2039122 D 866768 CDS YP_003036163.1 253773332 8157200 2040120..2042507 1 NC_012947.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2042507 pheT 8157200 pheT Escherichia coli 'BL21-Gold(DE3)pLysS AG' phenylalanyl-tRNA synthetase subunit beta YP_003036163.1 2040120 D 866768 CDS YP_003036164.1 253773333 8157201 2042512..2042811 1 NC_012947.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2042811 ihfA 8157201 ihfA Escherichia coli 'BL21-Gold(DE3)pLysS AG' integration host factor subunit alpha YP_003036164.1 2042512 D 866768 CDS YP_003036165.1 253773334 8157202 2042912..2043892 1 NC_012947.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 2043892 8157202 ECBD_1934 Escherichia coli 'BL21-Gold(DE3)pLysS AG' vtamin B12-transporter permease YP_003036165.1 2042912 D 866768 CDS YP_003036166.1 253773335 8157203 2043955..2044506 1 NC_012947.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 2044506 btuE 8157203 btuE Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione peroxidase YP_003036166.1 2043955 D 866768 CDS YP_003036167.1 253773336 8157204 2044506..2045255 1 NC_012947.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 2045255 8157204 ECBD_1936 Escherichia coli 'BL21-Gold(DE3)pLysS AG' vitamin B12-transporter ATPase YP_003036167.1 2044506 D 866768 CDS YP_003036168.1 253773337 8157205 2045333..2045797 1 NC_012947.1 PFAM: NLP/P60 protein; KEGG: elf:LF82_1500 lipoprotein NlpC; NLP/P60 protein 2045797 8157205 ECBD_1937 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NLP/P60 protein YP_003036168.1 2045333 D 866768 CDS YP_003036169.1 253773338 8157207 2046819..2048255 1 NC_012947.1 PFAM: protein of unknown function UPF0061; KEGG: sfv:SFV_1518 hypothetical protein; hypothetical protein 2048255 8157207 ECBD_1939 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036169.1 2046819 D 866768 CDS YP_003036170.1 253773339 8157208 complement(2048259..2048450) 1 NC_012947.1 KEGG: sdy:SDY_1799 hypothetical protein; hypothetical protein 2048450 8157208 ECBD_1940 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036170.1 2048259 R 866768 CDS YP_003036171.1 253773340 8157209 complement(2048582..2049628) 1 NC_012947.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2049628 8157209 ECBD_1941 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phospho-2-dehydro-3-deoxyheptonate aldolase YP_003036171.1 2048582 R 866768 CDS YP_003036172.1 253773341 8157210 complement(2049785..2050618) 1 NC_012947.1 PFAM: protein of unknown function DUF299; KEGG: sdy:SDY_1797 hypothetical protein; hypothetical protein 2050618 8157210 ECBD_1942 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036172.1 2049785 R 866768 CDS YP_003036173.1 253773342 8157211 2050730..2050897 1 NC_012947.1 hypothetical protein 2050897 8157211 ECBD_1943 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036173.1 2050730 D 866768 CDS YP_003036174.1 253773343 8157212 2050951..2053329 1 NC_012947.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2053329 8157212 ECBD_1944 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoenolpyruvate synthase YP_003036174.1 2050951 D 866768 CDS YP_003036175.1 253773344 8157213 complement(2053386..2055032) 1 NC_012947.1 acts in anaerobic beta-oxidation of fatty acids; ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 2055032 8157213 ECBD_1945 Escherichia coli 'BL21-Gold(DE3)pLysS AG' short chain acyl-CoA synthetase YP_003036175.1 2053386 R 866768 CDS YP_003036176.1 253773345 8157214 complement(2055089..2055382) 1 NC_012947.1 KEGG: sbc:SbBS512_E1903 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2055382 8157214 ECBD_1946 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-sulfur cluster-binding protein YP_003036176.1 2055089 R 866768 CDS YP_003036177.1 253773346 8157215 complement(2055379..2056668) 1 NC_012947.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; HI0933 family protein; KEGG: sfv:SFV_1525 hypothetical protein; hypothetical protein 2056668 8157215 ECBD_1947 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036177.1 2055379 R 866768 CDS YP_003036178.1 253773347 8157216 complement(2056724..2057662) 1 NC_012947.1 May play a role in a redox process; electron transfer flavoprotein subunit YdiR 2057662 8157216 ECBD_1948 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transfer flavoprotein subunit YdiR YP_003036178.1 2056724 R 866768 CDS YP_003036179.1 253773348 8157217 complement(2057682..2058446) 1 NC_012947.1 YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; electron transfer flavoprotein YdiQ 2058446 8157217 ECBD_1949 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transfer flavoprotein YdiQ YP_003036179.1 2057682 R 866768 CDS YP_003036180.1 253773349 8157218 2058762..2059673 1 NC_012947.1 PFAM: cupin; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E1899 AraC family transcriptional regulator; AraC family transcriptional regulator 2059673 8157218 ECBD_1950 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003036180.1 2058762 D 866768 CDS YP_003036181.1 253773350 8157219 complement(2059716..2060867) 1 NC_012947.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase 2060867 8157219 ECBD_1951 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyl-CoA dehydrogenase YP_003036181.1 2059716 R 866768 CDS YP_003036182.1 253773351 8157220 complement(2060881..2062476) 1 NC_012947.1 PFAM: coenzyme A transferase; KEGG: elf:LF82_2872 uncharacterized protein YdiF; coenzyme A transferase 2062476 8157220 ECBD_1952 Escherichia coli 'BL21-Gold(DE3)pLysS AG' coenzyme A transferase YP_003036182.1 2060881 R 866768 CDS YP_003036183.1 253773352 8157221 complement(2062621..2063379) 1 NC_012947.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 2063379 aroD 8157221 aroD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-dehydroquinate dehydratase YP_003036183.1 2062621 R 866768 CDS YP_003036184.1 253773353 8157222 complement(2063410..2064276) 1 NC_012947.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase 2064276 8157222 ECBD_1954 Escherichia coli 'BL21-Gold(DE3)pLysS AG' quinate/shikimate dehydrogenase YP_003036184.1 2063410 R 866768 CDS YP_003036185.1 253773354 8157223 complement(2064288..2065553) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily MFS_1 2065553 8157223 ECBD_1955 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003036185.1 2064288 R 866768 CDS YP_003036186.1 253773355 8157225 complement(2067093..2067449) 1 NC_012947.1 PFAM: Domain of unknown function DUF1870; KEGG: ssn:SSON_1466 hypothetical protein; hypothetical protein 2067449 8157225 ECBD_1957 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036186.1 2067093 R 866768 CDS YP_003036187.1 253773356 8157226 complement(2067878..2068990) 1 NC_012947.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; inner membrane protein 2068990 8157226 ECBD_1958 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane protein YP_003036187.1 2067878 R 866768 CDS YP_003036188.1 253773357 8157227 2069379..2072435 1 NC_012947.1 PFAM: FAD linked oxidase; KEGG: ssn:SSON_1469 oxidase; FAD linked oxidase 2072435 8157227 ECBD_1959 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FAD linked oxidase YP_003036188.1 2069379 D 866768 CDS YP_003036189.1 253773358 8157228 2072432..2072842 1 NC_012947.1 PFAM: thioesterase superfamily protein; KEGG: ssn:SSON_1470 hypothetical protein; hypothetical protein 2072842 8157228 ECBD_1960 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036189.1 2072432 D 866768 CDS YP_003036190.1 253773359 8157229 2072861..2073130 1 NC_012947.1 KEGG: sfv:SFV_1708 hypothetical protein; hypothetical protein 2073130 8157229 ECBD_1961 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036190.1 2072861 D 866768 CDS YP_003036191.1 253773360 8157230 2073678..2074688 1 NC_012947.1 PFAM: SufBD protein; KEGG: sbo:SBO_1447 cysteine desulfurase activator complex subunit SufB; SufBD protein 2074688 8157230 ECBD_1962 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SufBD protein YP_003036191.1 2073678 D 866768 CDS YP_003036192.1 253773361 8157231 2074698..2075444 1 NC_012947.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase ATPase component 2075444 sufC 8157231 sufC Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine desulfurase ATPase component YP_003036192.1 2074698 D 866768 CDS YP_003036193.1 253773362 8157232 2075419..2076690 1 NC_012947.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 2076690 8157232 ECBD_1964 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine desulfurase activator complex subunit SufD YP_003036193.1 2075419 D 866768 CDS YP_003036194.1 253773363 8157233 2076687..2077907 1 NC_012947.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 2077907 8157233 ECBD_1965 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional cysteine desulfurase/selenocysteine lyase YP_003036194.1 2076687 D 866768 CDS YP_003036195.1 253773364 8157234 2077920..2078336 1 NC_012947.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 2078336 8157234 ECBD_1966 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine desufuration protein SufE YP_003036195.1 2077920 D 866768 CDS YP_003036196.1 253773365 8157235 2078485..2079489 1 NC_012947.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: sfv:SFV_1701 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2079489 8157235 ECBD_1967 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ErfK/YbiS/YcfS/YnhG family protein YP_003036196.1 2078485 D 866768 CDS YP_003036197.1 253773366 8157236 complement(2079553..2079789) 1 NC_012947.1 PFAM: LPP repeat-containing protein; KEGG: ssn:SSON_1479 murein lipoprotein; LPP repeat-containing protein 2079789 8157236 ECBD_1968 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LPP repeat-containing protein YP_003036197.1 2079553 R 866768 CDS YP_003036198.1 253773367 8157237 complement(2080100..2081512) 1 NC_012947.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2081512 8157237 ECBD_1969 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvate kinase YP_003036198.1 2080100 R 866768 CDS YP_003036199.1 253773368 8157238 2082069..2082278 1 NC_012947.1 KEGG: ssn:SSON_1481 hypothetical protein; hypothetical protein 2082278 8157238 ECBD_1970 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036199.1 2082069 D 866768 CDS YP_003036200.1 253773369 8157239 2082733..2083359 1 NC_012947.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 hypothetical protein; hypothetical protein 2083359 8157239 ECBD_1971 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036200.1 2082733 D 866768 CDS YP_003036201.1 253773370 8157240 2083380..2085482 1 NC_012947.1 PFAM: aldehyde ferredoxin oxidoreductase ; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase; oxidoreductase 2085482 8157240 ECBD_1972 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase YP_003036201.1 2083380 D 866768 CDS YP_003036202.1 253773371 8157241 2085495..2086133 1 NC_012947.1 KEGG: sbo:SBO_1460 hypothetical protein; hypothetical protein 2086133 8157241 ECBD_1973 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036202.1 2085495 D 866768 CDS YP_003036203.1 253773372 8157242 2086197..2086865 1 NC_012947.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_1693 oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein 2086865 8157242 ECBD_1974 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003036203.1 2086197 D 866768 CDS YP_003036204.1 253773373 8157243 2086862..2087647 1 NC_012947.1 PFAM: cytochrome B561; KEGG: sbc:SbBS512_E1870 nickel-dependent hydrogenase, b-type cytochrome subunit; cytochrome B561 2087647 8157243 ECBD_1975 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome B561 YP_003036204.1 2086862 D 866768 CDS YP_003036205.1 253773374 8157244 2087699..2088463 1 NC_012947.1 KEGG: sdy:SDY_1897 hypothetical protein; hypothetical protein 2088463 8157244 ECBD_1976 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036205.1 2087699 D 866768 CDS YP_003036206.1 253773375 8157245 complement(2088475..2090079) 1 NC_012947.1 KEGG: ssn:SSON_1488 hypothetical protein; hypothetical protein 2090079 8157245 ECBD_1977 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036206.1 2088475 R 866768 CDS YP_003036207.1 253773376 8157246 complement(2090205..2090510) 1 NC_012947.1 PFAM: mono-oxygenase ydhR; KEGG: sbc:SbBS512_E1865 YdhR protein; hypothetical protein 2090510 8157246 ECBD_1978 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036207.1 2090205 R 866768 CDS YP_003036208.1 253773377 8157249 2091083..2092339 1 NC_012947.1 KEGG: ssn:SSON_1492 hypothetical protein; hypothetical protein 2092339 8157249 ECBD_1979 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036208.1 2091083 D 866768 CDS YP_003036209.1 253773378 8157250 complement(2092380..2093753) 1 NC_012947.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 2093753 8157250 ECBD_1980 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux protein YP_003036209.1 2092380 R 866768 CDS YP_003036210.1 253773379 8157251 2093968..2094609 1 NC_012947.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2094609 8157251 ECBD_1981 Escherichia coli 'BL21-Gold(DE3)pLysS AG' riboflavin synthase subunit alpha YP_003036210.1 2093968 D 866768 CDS YP_003036211.1 253773380 8157252 complement(2094649..2095797) 1 NC_012947.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane fatty acyl phospholipid synthase 2095797 8157252 ECBD_1982 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cyclopropane fatty acyl phospholipid synthase YP_003036211.1 2094649 R 866768 CDS YP_003036212.1 253773381 8157253 complement(2096088..2097299) 1 NC_012947.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transporter YdhC 2097299 8157253 ECBD_1983 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane transporter YdhC YP_003036212.1 2096088 R 866768 CDS YP_003036213.1 253773382 8157254 2097412..2098344 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sdy:SDY_1885 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 2098344 8157254 ECBD_1984 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003036213.1 2097412 D 866768 CDS YP_003036214.1 253773383 8157255 complement(2098341..2099366) 1 NC_012947.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 2099366 8157255 ECBD_1985 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor PurR YP_003036214.1 2098341 R 866768 CDS YP_003036215.1 253773384 8157256 2099920..2101089 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_1883 transporter; major facilitator superfamily MFS_1 2101089 8157256 ECBD_1986 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003036215.1 2099920 D 866768 CDS YP_003036216.1 253773385 8157257 complement(2101324..2101905) 1 NC_012947.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 2101905 8157257 ECBD_1987 Escherichia coli 'BL21-Gold(DE3)pLysS AG' superoxide dismutase YP_003036216.1 2101324 R 866768 CDS YP_003036217.1 253773386 8157258 complement(2102033..2102848) 1 NC_012947.1 PFAM: NLP/P60 protein; KEGG: sbc:SbBS512_E1852 NlpC/P60 family protein; NLP/P60 protein 2102848 8157258 ECBD_1988 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NLP/P60 protein YP_003036217.1 2102033 R 866768 CDS YP_003036218.1 253773387 8157259 2103182..2103529 1 NC_012947.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sdy:SDY_1880 hypothetical protein; hypothetical protein 2103529 8157259 ECBD_1989 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036218.1 2103182 D 866768 CDS YP_003036219.1 253773388 8157260 complement(2103580..2108196) 1 NC_012947.1 similar to the DNA and RNA helicase superfamily II and eukaryotic DEAD family of helicases; longest known protein in E. coli; ATP-dependent helicase Lhr 2108196 8157260 ECBD_1990 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent helicase Lhr YP_003036219.1 2103580 R 866768 CDS YP_003036220.1 253773389 8157261 complement(2108289..2108936) 1 NC_012947.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2108936 8157261 ECBD_1991 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease T YP_003036220.1 2108289 R 866768 CDS YP_003036221.1 253773390 8157262 complement(2109039..2109446) 1 NC_012947.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I 2109446 8157262 ECBD_1992 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glyoxalase I YP_003036221.1 2109039 R 866768 CDS YP_003036222.1 253773391 8158493 complement(2109527..2110624) 1 NC_012947.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 2110624 8158493 ECBD_1993 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-ethylmaleimide reductase YP_003036222.1 2109527 R 866768 CDS YP_003036223.1 253773392 8157100 complement(2110661..2111260) 1 NC_012947.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E1841 TetR family transcriptional regulator; TetR family transcriptional regulator 2111260 8157100 ECBD_1994 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TetR family transcriptional regulator YP_003036223.1 2110661 R 866768 CDS YP_003036224.1 253773393 8157101 2111363..2111602 1 NC_012947.1 PFAM: protein of unknown function DUF1289; KEGG: sdy:SDY_1873 hypothetical protein; hypothetical protein 2111602 8157101 ECBD_1995 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036224.1 2111363 D 866768 CDS YP_003036225.1 253773394 8157102 2111651..2112547 1 NC_012947.1 PFAM: aldo/keto reductase; KEGG: efe:EFER_1396 oxidoreductase; aldo/keto reductase 2112547 8157102 ECBD_1996 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldo/keto reductase YP_003036225.1 2111651 D 866768 CDS YP_003036226.1 253773395 8157103 2112628..2113149 1 NC_012947.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 2113149 8157103 ECBD_1997 Escherichia coli 'BL21-Gold(DE3)pLysS AG' superoxide dismutase YP_003036226.1 2112628 D 866768 CDS YP_003036227.1 253773396 8157104 complement(2113150..2115162) 1 NC_012947.1 PFAM: fusaric acid resistance protein conserved region; fusaric acid resistance protein conserved region 2115162 8157104 ECBD_1998 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fusaric acid resistance protein conserved region YP_003036227.1 2113150 R 866768 CDS YP_003036228.1 253773397 8157105 complement(2115162..2116019) 1 NC_012947.1 PFAM: secretion protein HlyD; KEGG: sbc:SbBS512_E1836 auxiliary transporter, membrane fusion protein (MFP) family; secretion protein HlyD 2116019 8157105 ECBD_1999 Escherichia coli 'BL21-Gold(DE3)pLysS AG' secretion protein HlyD YP_003036228.1 2115162 R 866768 CDS YP_003036229.1 253773398 8157106 complement(2116022..2116258) 1 NC_012947.1 PFAM: protein of unknown function DUF1656; KEGG: sfl:SF1670 hypothetical protein; hypothetical protein 2116258 8157106 ECBD_2000 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036229.1 2116022 R 866768 CDS YP_003036230.1 253773399 8157107 2116459..2116893 1 NC_012947.1 transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 2116893 8157107 ECBD_2001 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator SlyA YP_003036230.1 2116459 D 866768 CDS YP_003036231.1 253773400 8157108 complement(2116940..2117407) 1 NC_012947.1 PFAM: 17 kDa surface antigen; KEGG: sfl:SF1668 outer membrane protein; 17 kDa surface antigen 2117407 8157108 ECBD_2002 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 17 kDa surface antigen YP_003036231.1 2116940 R 866768 CDS YP_003036232.1 253773401 8157109 2117681..2118790 1 NC_012947.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 2118790 anmK 8157109 anmK Escherichia coli 'BL21-Gold(DE3)pLysS AG' anhydro-N-acetylmuramic acid kinase YP_003036232.1 2117681 D 866768 CDS YP_003036233.1 253773402 8157110 2118894..2119217 1 NC_012947.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 2119217 8157110 ECBD_2004 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysozyme inhibitor YP_003036233.1 2118894 D 866768 CDS YP_003036234.1 253773403 8157111 2119276..2119932 1 NC_012947.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2119932 8157111 ECBD_2005 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyridoxamine 5'-phosphate oxidase YP_003036234.1 2119276 D 866768 CDS YP_003036235.1 253773404 8157112 2120061..2121335 1 NC_012947.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 2121335 8157112 ECBD_2006 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tyrosyl-tRNA synthetase YP_003036235.1 2120061 D 866768 CDS YP_003036236.1 253773405 8157113 2121397..2122257 1 NC_012947.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 2122257 8157113 ECBD_2007 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyridoxamine kinase YP_003036236.1 2121397 D 866768 CDS YP_003036237.1 253773406 8157114 complement(2122301..2122906) 1 NC_012947.1 PFAM: glutathione S-transferase domain; KEGG: sdy:SDY_1858 glutathionine S-transferase; glutathionine S-transferase 2122906 8157114 ECBD_2008 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathionine S-transferase YP_003036237.1 2122301 R 866768 CDS YP_003036238.1 253773407 8157115 complement(2123012..2124514) 1 NC_012947.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease 2124514 tppB 8157115 tppB Escherichia coli 'BL21-Gold(DE3)pLysS AG' tripeptide transporter permease YP_003036238.1 2123012 R 866768 CDS YP_003036239.1 253773408 8157116 complement(2124797..2124997) 1 NC_012947.1 KEGG: sbc:SbBS512_E1823 hypothetical protein; hypothetical protein 2124997 8157116 ECBD_2010 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036239.1 2124797 R 866768 CDS YP_003036240.1 253773409 8157117 complement(2125125..2125760) 1 NC_012947.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III 2125760 8157117 ECBD_2011 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endonuclease III YP_003036240.1 2125125 R 866768 CDS YP_003036241.1 253773410 8157118 complement(2125760..2126455) 1 NC_012947.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 2126455 8157118 ECBD_2012 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transport complex RsxE subunit YP_003036241.1 2125760 R 866768 CDS YP_003036242.1 253773411 8157119 complement(2126459..2127079) 1 NC_012947.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2127079 8157119 ECBD_2013 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transport complex protein RnfG YP_003036242.1 2126459 R 866768 CDS YP_003036243.1 253773412 8157120 complement(2127083..2128141) 1 NC_012947.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2128141 rnfD 8157120 rnfD Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transport complex protein RnfD YP_003036243.1 2127083 R 866768 CDS YP_003036244.1 253773413 8157121 complement(2128142..2130268) 1 NC_012947.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2130268 8157121 ECBD_2015 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transport complex protein RnfC YP_003036244.1 2128142 R 866768 CDS YP_003036245.1 253773414 8157122 complement(2130261..2130839) 1 NC_012947.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2130839 8157122 ECBD_2016 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transport complex protein RnfB YP_003036245.1 2130261 R 866768 CDS YP_003036246.1 253773415 8157123 complement(2130839..2131420) 1 NC_012947.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: sbc:SbBS512_E1816 electron transport complex, RnfABCDGE type, subunit alpha; Na(+)-translocating NADH-quinone reductase subunit E 2131420 8157123 ECBD_2017 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Na(+)-translocating NADH-quinone reductase subunit E YP_003036246.1 2130839 R 866768 CDS YP_003036247.1 253773416 8157124 complement(2131497..2131937) 1 NC_012947.1 KEGG: ssn:SSON_1532 hypothetical protein; hypothetical protein 2131937 8157124 ECBD_2018 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036247.1 2131497 R 866768 CDS YP_003036248.1 253773417 8157125 complement(2132023..2132238) 1 NC_012947.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein 2132238 8157125 ECBD_2019 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oriC-binding nucleoid-associated protein YP_003036248.1 2132023 R 866768 CDS YP_003036249.1 253773418 8157126 complement(2132511..2132711) 1 NC_012947.1 KEGG: ses:SARI_01519 hypothetical protein; hypothetical protein 2132711 8157126 ECBD_2020 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036249.1 2132511 R 866768 CDS YP_003036250.1 253773419 8157127 2132879..2133919 1 NC_012947.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: sbo:SBO_1510 oxidoreductase; oxidoreductase 2133919 8157127 ECBD_2021 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase YP_003036250.1 2132879 D 866768 CDS YP_003036251.1 253773420 8157128 complement(2133953..2134954) 1 NC_012947.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 2134954 8157128 ECBD_2022 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenosine deaminase YP_003036251.1 2133953 R 866768 CDS YP_003036252.1 253773421 8157129 complement(2135058..2136230) 1 NC_012947.1 PFAM: aminotransferase class I and II; KEGG: elf:LF82_1268 protein MalY; aminotransferase class I and II 2136230 8157129 ECBD_2023 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminotransferase class I and II YP_003036252.1 2135058 R 866768 CDS YP_003036253.1 253773422 8157130 complement(2136240..2137832) 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; bifunctional PTS system maltose and glucose-specific transporter subunits IICB 2137832 8157130 ECBD_2024 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional PTS system maltose and glucose-specific transporter subunits IICB YP_003036253.1 2136240 R 866768 CDS YP_003036254.1 253773423 8157131 2138007..2139035 1 NC_012947.1 regulates malXY which are involved in maltose-glucose transport; DNA-binding transcriptional repressor MalI 2139035 8157131 ECBD_2025 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor MalI YP_003036254.1 2138007 D 866768 CDS YP_003036255.1 253773424 8157132 2139146..2139913 1 NC_012947.1 Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 2139913 8157132 ECBD_2026 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 7-alpha-hydroxysteroid dehydrogenase YP_003036255.1 2139146 D 866768 CDS YP_003036256.1 253773425 8157133 2140146..2140724 1 NC_012947.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_1837 repressor for uid operon; TetR family transcriptional regulator 2140724 8157133 ECBD_2027 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TetR family transcriptional regulator YP_003036256.1 2140146 D 866768 CDS YP_003036257.1 253773426 8157134 2141115..2142926 1 NC_012947.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: ssn:SSON_1543 beta-D-glucuronidase; beta-D-glucuronidase 2142926 8157134 ECBD_2028 Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-D-glucuronidase YP_003036257.1 2141115 D 866768 CDS YP_003036258.1 253773427 8157135 2142923..2144296 1 NC_012947.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1544 glucuronide transporter; glucuronide transporter 2144296 8157135 ECBD_2029 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucuronide transporter YP_003036258.1 2142923 D 866768 CDS YP_003036259.1 253773428 8157136 2144335..2145600 1 NC_012947.1 PFAM: outer membrane porin; KEGG: elf:LF82_2370 membrane-associated protein UidC; outer membrane porin protein 2145600 8157136 ECBD_2030 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane porin protein YP_003036259.1 2144335 D 866768 CDS YP_003036260.1 253773429 8157137 complement(2145661..2145756) 1 NC_012947.1 hypothetical protein 2145756 8157137 ECBD_2031 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036260.1 2145661 R 866768 CDS YP_003036261.1 253773430 8157138 complement(2145826..2147334) 1 NC_012947.1 PFAM: protein of unknown function DUF945; KEGG: sbc:SbBS512_E1800 hypothetical protein; hypothetical protein 2147334 8157138 ECBD_2032 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036261.1 2145826 R 866768 CDS YP_003036262.1 253773431 8157139 complement(2147435..2148610) 1 NC_012947.1 KEGG: sfv:SFV_1629 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase, class I 2148610 8157139 ECBD_2033 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannose-6-phosphate isomerase, class I YP_003036262.1 2147435 R 866768 CDS YP_003036263.1 253773432 8157140 2148809..2150455 1 NC_012947.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: elf:LF82_0776 fumarate hydratase class I, aerobic; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta 2150455 8157140 ECBD_2034 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta YP_003036263.1 2148809 D 866768 CDS YP_003036264.1 253773433 8157141 2150598..2152001 1 NC_012947.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2152001 fumC 8157141 fumC Escherichia coli 'BL21-Gold(DE3)pLysS AG' fumarate hydratase YP_003036264.1 2150598 D 866768 CDS YP_003036265.1 253773434 8157142 complement(2151998..2152927) 1 NC_012947.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 2152927 8157142 ECBD_2036 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA replication terminus site-binding protein YP_003036265.1 2151998 R 866768 CDS YP_003036266.1 253773435 8157143 complement(2153003..2154304) 1 NC_012947.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sdy:SDY_1825 sensor protein RstB; sensor protein RstB 2154304 8157143 ECBD_2037 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensor protein RstB YP_003036266.1 2153003 R 866768 CDS YP_003036267.1 253773436 8157144 complement(2154308..2155027) 1 NC_012947.1 response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA 2155027 8157144 ECBD_2038 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator RstA YP_003036267.1 2154308 R 866768 CDS YP_003036268.1 253773437 8157145 2155156..2155491 1 NC_012947.1 PFAM: GlpM family protein; KEGG: sdy:SDY_1546 hypothetical protein; GlpM family protein 2155491 8157145 ECBD_2039 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GlpM family protein YP_003036268.1 2155156 D 866768 CDS YP_003036269.1 253773438 8157146 complement(2155488..2156210) 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_1547 short chain dehydrogenase; short chain dehydrogenase 2156210 8157146 ECBD_2040 Escherichia coli 'BL21-Gold(DE3)pLysS AG' short chain dehydrogenase YP_003036269.1 2155488 R 866768 CDS YP_003036270.1 253773439 8157147 complement(2156247..2157629) 1 NC_012947.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: sfv:SFV_1620 arginine/ornithine antiporter; arginine/ornithine antiporter 2157629 8157147 ECBD_2041 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine/ornithine antiporter YP_003036270.1 2156247 R 866768 CDS YP_003036271.1 253773440 8157148 complement(2157815..2158759) 1 NC_012947.1 PFAM: protein of unknown function DUF1471; KEGG: elf:LF82_2844 protein YdgH; hypothetical protein 2158759 8157148 ECBD_2042 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036271.1 2157815 R 866768 CDS YP_003036272.1 253773441 8157149 2159283..2160815 1 NC_012947.1 forms a tetramer composed of 2 subunit alphas and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 2160815 pntA 8157149 pntA Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD(P) transhydrogenase subunit alpha YP_003036272.1 2159283 D 866768 CDS YP_003036273.1 253773442 8157150 2160826..2162214 1 NC_012947.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 subunit betas; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 2162214 pntB 8157150 pntB Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyridine nucleotide transhydrogenase YP_003036273.1 2160826 D 866768 CDS YP_003036274.1 253773443 8157151 complement(2162239..2163273) 1 NC_012947.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; transporter 2163273 tqsA 8157151 tqsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter YP_003036274.1 2162239 R 866768 CDS YP_003036275.1 253773444 8157152 2163685..2164050 1 NC_012947.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 2164050 8157152 ECBD_2046 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system protein MdtJ YP_003036275.1 2163685 D 866768 CDS YP_003036276.1 253773445 8157153 2164037..2164366 1 NC_012947.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 2164366 8157153 ECBD_2047 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system protein MdtI YP_003036276.1 2164037 D 866768 CDS YP_003036277.1 253773446 8157154 complement(2164405..2165226) 1 NC_012947.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: elf:LF82_2843 uncharacterized serine protease YdgD; peptidase S1 and S6 chymotrypsin/Hap 2165226 8157154 ECBD_2048 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase S1 and S6 chymotrypsin/Hap YP_003036277.1 2164405 R 866768 CDS YP_003036278.1 253773447 8157155 complement(2165502..2165810) 1 NC_012947.1 required for growth and survival under moderately acid conditions; acid shock protein precursor 2165810 8157155 ECBD_2049 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acid shock protein precursor YP_003036278.1 2165502 R 866768 CDS YP_003036279.1 253773448 8157156 complement(2166234..2167487) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1568 transporter; major facilitator superfamily MFS_1 2167487 8157156 ECBD_2050 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003036279.1 2166234 R 866768 CDS YP_003036280.1 253773449 8157157 2167594..2168487 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; LysR family transcriptional regulator 2168487 8157157 ECBD_2051 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003036280.1 2167594 D 866768 CDS YP_003036281.1 253773450 8157158 2168622..2169842 1 NC_012947.1 PFAM: ROK family protein; KEGG: sbc:SbBS512_E1780 transcriptional regulator Mic; ROK family protein 2169842 8157158 ECBD_2052 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ROK family protein YP_003036281.1 2168622 D 866768 CDS YP_003036282.1 253773451 8157159 2169967..2170662 1 NC_012947.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 2170662 8157159 ECBD_2053 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dithiobiotin synthetase YP_003036282.1 2169967 D 866768 CDS YP_003036283.1 253773452 8157160 complement(2170615..2171871) 1 NC_012947.1 PFAM: chloride channel core; voltage-gated ClC-type chloride channel ClcB 2171871 8157160 ECBD_2054 Escherichia coli 'BL21-Gold(DE3)pLysS AG' voltage-gated ClC-type chloride channel ClcB YP_003036283.1 2170615 R 866768 CDS YP_003036284.1 253773453 8157161 complement(2172066..2172680) 1 NC_012947.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD 2172680 8157161 ECBD_2055 Escherichia coli 'BL21-Gold(DE3)pLysS AG' twin-argninine leader-binding protein DmsD YP_003036284.1 2172066 R 866768 CDS YP_003036285.1 253773454 8157162 complement(2172723..2173577) 1 NC_012947.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: sbo:SBO_1546 DMSO reductase anchor subunit; DMSO reductase anchor subunit (DmsC) 2173577 8157162 ECBD_2056 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DMSO reductase anchor subunit (DmsC) YP_003036285.1 2172723 R 866768 CDS YP_003036286.1 253773455 8157163 complement(2173579..2174196) 1 NC_012947.1 TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sdy:SDY_1567 oxidoreductase, Fe-S subunit; dimethylsulfoxide reductase, chain B 2174196 8157163 ECBD_2057 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dimethylsulfoxide reductase, chain B YP_003036286.1 2173579 R 866768 CDS YP_003036287.1 253773456 8157164 complement(2174207..2176630) 1 NC_012947.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: sbo:SBO_1548 oxidoreductase, major subunit; anaerobic dimethyl sulfoxide reductase, subunit alpha, DmsA/YnfE family 2176630 8157164 ECBD_2058 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic dimethyl sulfoxide reductase, subunit alpha, DmsA/YnfE family YP_003036287.1 2174207 R 866768 CDS YP_003036288.1 253773457 8157165 complement(2176691..2179117) 1 NC_012947.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; anaerobic dimethyl sulfoxide reductase, subunit alpha, DmsA/YnfE family 2179117 8157165 ECBD_2059 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic dimethyl sulfoxide reductase, subunit alpha, DmsA/YnfE family YP_003036288.1 2176691 R 866768 CDS YP_003036289.1 253773458 8157166 complement(2179316..2179621) 1 NC_012947.1 PFAM: protein of unknown function DUF1161; hypothetical protein 2179621 8157166 ECBD_2060 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036289.1 2179316 R 866768 CDS YP_003036290.1 253773459 8157167 2179693..2180439 1 NC_012947.1 PFAM: protein of unknown function UPF0257; KEGG: sfv:SFV_1559 hypothetical protein; hypothetical protein 2180439 8157167 ECBD_2061 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036290.1 2179693 D 866768 CDS YP_003036291.1 253773460 8157168 complement(2180442..2181002) 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; diamine N-acetyltransferase 2181002 8157168 ECBD_2062 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diamine N-acetyltransferase YP_003036291.1 2180442 R 866768 CDS YP_003036292.1 253773461 8157169 complement(2181037..2181378) 1 NC_012947.1 PFAM: protein of unknown function DUF1283; KEGG: sfv:SFV_1561 hypothetical protein; hypothetical protein 2181378 8157169 ECBD_2063 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036292.1 2181037 R 866768 CDS YP_003036293.1 253773462 8157170 2181513..2181839 1 NC_012947.1 PFAM: protein of unknown function UPF0060; KEGG: elf:LF82_3567 UPF0060 membrane protein YnfA; hypothetical protein 2181839 8157170 ECBD_2064 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036293.1 2181513 D 866768 CDS YP_003036294.1 253773463 8157171 2182045..2183259 1 NC_012947.1 PFAM: mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 2183259 8157171 ECBD_2065 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mandelate racemase/muconate lactonizing protein YP_003036294.1 2182045 D 866768 CDS YP_003036295.1 253773464 8157172 2183271..2184290 1 NC_012947.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: elf:LF82_2029 starvation-sensing protein RspB; dehydrogenase 2184290 8157172 ECBD_2066 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dehydrogenase YP_003036295.1 2183271 D 866768 CDS YP_003036296.1 253773465 8157175 complement(2185986..2186492) 1 NC_012947.1 KEGG: elf:LF82_2828 ExoO exonuclease VIII, ds DNA exonuclease encoded by prophage CP-933O; ExoO exonuclease VIII, ds DNA exonuclease encoded by prophage CP-933O 2186492 8157175 ECBD_2069 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ExoO exonuclease VIII, ds DNA exonuclease encoded by prophage CP-933O YP_003036296.1 2185986 R 866768 CDS YP_003036297.1 253773466 8157176 complement(2186586..2186777) 1 NC_012947.1 PFAM: protein of unknown function DUF1482; KEGG: elf:LF82_2827 uncharacterized protein YdfD; hypothetical protein 2186777 8157176 ECBD_2070 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036297.1 2186586 R 866768 CDS YP_003036298.1 253773467 8157177 complement(2186774..2186962) 1 NC_012947.1 PFAM: DicB family protein; KEGG: elf:LF82_0484 division inhibition protein DicB; DicB family protein 2186962 8157177 ECBD_2071 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DicB family protein YP_003036298.1 2186774 R 866768 CDS YP_003036299.1 253773468 8157178 2187465..2187665 1 NC_012947.1 hypothetical protein 2187665 8157178 ECBD_2072 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036299.1 2187465 D 866768 CDS YP_003036300.1 253773469 8157179 complement(2187634..2187999) 1 NC_012947.1 hypothetical protein 2187999 8157179 ECBD_2073 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036300.1 2187634 R 866768 CDS YP_003036301.1 253773470 8158241 complement(2188332..2188739) 1 NC_012947.1 The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC, but its specific role in cellular replication and mode of action are still unknown.; transcriptional repressor DicA 2188739 8158241 ECBD_2075 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional repressor DicA YP_003036301.1 2188332 R 866768 CDS YP_003036302.1 253773471 8159564 2188820..2189047 1 NC_012947.1 DNA-binding transcriptional regulator DicC 2189047 8159564 ECBD_2076 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator DicC YP_003036302.1 2188820 D 866768 CDS YP_003036303.1 253773472 8159565 2189031..2189552 1 NC_012947.1 PFAM: protein of unknown function DUF1019; hypothetical protein 2189552 8159565 ECBD_2077 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036303.1 2189031 D 866768 CDS YP_003036304.1 253773473 8159566 2189533..2190498 1 NC_012947.1 KEGG: sbc:SbBS512_E1433 phage O protein family; phage O protein family 2190498 8159566 ECBD_2078 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage O protein family YP_003036304.1 2189533 D 866768 CDS YP_003036305.1 253773474 8159567 2190539..2190898 1 NC_012947.1 PFAM: protein of unknown function DUF977; KEGG: sbc:SbBS512_E1436 hypothetical protein; hypothetical protein 2190898 8159567 ECBD_2079 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036305.1 2190539 D 866768 CDS YP_003036306.1 253773475 8159569 2191103..2191315 1 NC_012947.1 PFAM: Hok/gef cell toxic protein; KEGG: sfx:S2143 cell killing protein of prophage; Hok/gef cell toxic protein 2191315 8159569 ECBD_2081 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Hok/gef cell toxic protein YP_003036306.1 2191103 D 866768 CDS YP_003036307.1 253773476 8159570 2191532..2191783 1 NC_012947.1 KEGG: sfv:SFV_1543 hypothetical protein; hypothetical protein 2191783 8159570 ECBD_2082 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036307.1 2191532 D 866768 CDS YP_003036308.1 253773477 8159571 2191850..2192128 1 NC_012947.1 KEGG: elf:LF82_p279 hypothetical protein; hypothetical protein 2192128 8159571 ECBD_2083 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036308.1 2191850 D 866768 CDS YP_003036309.1 253773478 8159572 2192130..2192780 1 NC_012947.1 PFAM: protein of unknown function DUF1277; SMART: HNH nuclease; KEGG: elf:LF82_2839 uncharacterized protein YdfU; hypothetical protein 2192780 8159572 ECBD_2084 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036309.1 2192130 D 866768 CDS YP_003036310.1 253773479 8159573 2192798..2193175 1 NC_012947.1 PFAM: antitermination Q family protein; KEGG: efe:EFER_2706 antitermination protein Q homolog; DLP12 prophage; antitermination Q family protein 2193175 8159573 ECBD_2085 Escherichia coli 'BL21-Gold(DE3)pLysS AG' antitermination Q family protein YP_003036310.1 2192798 D 866768 CDS YP_003036311.1 253773480 8159574 complement(2193331..2193855) 1 NC_012947.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 2193855 8159574 ECBD_2086 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein Blc YP_003036311.1 2193331 R 866768 CDS YP_003036312.1 253773481 8159575 2194048..2194197 1 NC_012947.1 KEGG: efe:EFER_2704 conserved hypothetical protein from bacteriophage origin; hypothetical protein 2194197 8159575 ECBD_2087 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036312.1 2194048 D 866768 CDS YP_003036313.1 253773482 8159576 complement(2194225..2195091) 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: sfv:SFV_1039 IS3 ORF2; Integrase catalytic region 2195091 8159576 ECBD_2088 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003036313.1 2194225 R 866768 CDS YP_003036314.1 253773483 8159577 complement(2195088..2195387) 1 NC_012947.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfx:S3209 IS3 orfA; transposase IS3/IS911 family protein 2195387 8159577 ECBD_2089 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS3/IS911 family protein YP_003036314.1 2195088 R 866768 CDS YP_003036315.1 253773484 8159579 2197349..2197630 1 NC_012947.1 KEGG: elf:LF82_p182 hypothetical protein; hypothetical protein 2197630 8159579 ECBD_2091 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036315.1 2197349 D 866768 CDS YP_003036316.1 253773485 8159580 2197640..2198344 1 NC_012947.1 hypothetical protein 2198344 8159580 ECBD_2092 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036316.1 2197640 D 866768 CDS YP_003036317.1 253773486 8159581 2198355..2198648 1 NC_012947.1 KEGG: elf:LF82_p259 hypothetical protein; hypothetical protein 2198648 8159581 ECBD_2093 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036317.1 2198355 D 866768 CDS YP_003036318.1 253773487 8159582 complement(2198876..2199466) 1 NC_012947.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: elf:LF82_1666 DNA-invertase from lambdoid prophage Rac; resolvase 2199466 8159582 ECBD_2094 Escherichia coli 'BL21-Gold(DE3)pLysS AG' resolvase YP_003036318.1 2198876 R 866768 CDS YP_003036319.1 253773488 8159583 complement(2199782..2200015) 1 NC_012947.1 KEGG: elf:LF82_2833 uncharacterized protein YdfK; hypothetical protein 2200015 8159583 ECBD_2095 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036319.1 2199782 R 866768 CDS YP_003036320.1 253773489 8159584 2200801..2202084 1 NC_012947.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: elf:LF82_2832 inner membrane metabolite transport protein YdfJ; metabolite/H+ symporter, major facilitator superfamily (MFS) 2202084 8159584 ECBD_2096 Escherichia coli 'BL21-Gold(DE3)pLysS AG' metabolite/H+ symporter, major facilitator superfamily (MFS) YP_003036320.1 2200801 D 866768 CDS YP_003036321.1 253773490 8159585 2202173..2203633 1 NC_012947.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfx:S1678 oxidoreductase; mannitol dehydrogenase 2203633 8159585 ECBD_2097 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannitol dehydrogenase YP_003036321.1 2202173 D 866768 CDS YP_003036322.1 253773491 8159586 complement(2203669..2203872) 1 NC_012947.1 TIGRFAM: selenium-binding protein YdfZ; KEGG: sdy:SDY_1584 hypothetical protein; selenium-binding protein YdfZ 2203872 8159586 ECBD_2098 Escherichia coli 'BL21-Gold(DE3)pLysS AG' selenium-binding protein YdfZ YP_003036322.1 2203669 R 866768 CDS YP_003036323.1 253773492 8159587 complement(2204049..2204735) 1 NC_012947.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ssn:SSON_1588 hypothetical protein; GntR family transcriptional regulator 2204735 8159587 ECBD_2099 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GntR family transcriptional regulator YP_003036323.1 2204049 R 866768 CDS YP_003036324.1 253773493 8159588 complement(2204824..2205570) 1 NC_012947.1 NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase 2205570 8159588 ECBD_2100 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-hydroxy acid dehydrogenase YP_003036324.1 2204824 R 866768 CDS YP_003036325.1 253773494 8159589 2205641..2207752 1 NC_012947.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; dipeptidyl carboxypeptidase II 2207752 8159589 ECBD_2101 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dipeptidyl carboxypeptidase II YP_003036325.1 2205641 D 866768 CDS YP_003036326.1 253773495 8159590 complement(2207796..2208314) 1 NC_012947.1 PFAM: damage inducible protein CinA; KEGG: sdy:SDY_1588 competence damage-inducible protein A; competence damage-inducible protein A 2208314 8159590 ECBD_2102 Escherichia coli 'BL21-Gold(DE3)pLysS AG' competence damage-inducible protein A YP_003036326.1 2207796 R 866768 CDS YP_003036327.1 253773496 8159591 2208590..2208982 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E1704 hypothetical protein; hypothetical protein 2208982 8159591 ECBD_2103 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036327.1 2208590 D 866768 CDS YP_003036328.1 253773497 8159592 2209237..2210127 1 NC_012947.1 KEGG: elf:LF82_2817 uncharacterized protein YdeH; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; hypothetical protein 2210127 8159592 ECBD_2104 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036328.1 2209237 D 866768 CDS YP_003036329.1 253773498 8159593 complement(2210346..2210441) 1 NC_012947.1 KEGG: sea:SeAg_B1655 hypothetical protein; hypothetical protein 2210441 8159593 ECBD_2105 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036329.1 2210346 R 866768 CDS YP_003036330.1 253773499 8159594 complement(2210568..2211755) 1 NC_012947.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS-type transporter YdeE 2211755 8159594 ECBD_2106 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MFS-type transporter YdeE YP_003036330.1 2210568 R 866768 CDS YP_003036331.1 253773500 8159595 2211950..2212849 1 NC_012947.1 PFAM: protein of unknown function DUF6 transmembrane; protein of unknown function DUF250; KEGG: sfv:SFV_1593 O-acetylserine/cysteine export protein; O-acetylserine/cysteine export protein 2212849 8159595 ECBD_2107 Escherichia coli 'BL21-Gold(DE3)pLysS AG' O-acetylserine/cysteine export protein YP_003036331.1 2211950 D 866768 CDS YP_003036332.1 253773501 8159596 complement(2212880..2213098) 1 NC_012947.1 KEGG: ssn:SSON_1596 hypothetical protein; hypothetical protein 2213098 8159596 ECBD_2108 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036332.1 2212880 R 866768 CDS YP_003036333.1 253773502 8159597 complement(2213130..2213513) 1 NC_012947.1 transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA 2213513 8159597 ECBD_2109 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator MarA YP_003036333.1 2213130 R 866768 CDS YP_003036334.1 253773503 8159598 complement(2213533..2213967) 1 NC_012947.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 2213967 8159598 ECBD_2110 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor MarR YP_003036334.1 2213533 R 866768 CDS YP_003036335.1 253773504 8159599 2214187..2214507 1 NC_012947.1 PFAM: protein of unknown function DUF891; KEGG: esa:ESA_03838 hypothetical protein; hypothetical protein 2214507 8159599 ECBD_2111 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036335.1 2214187 D 866768 CDS YP_003036336.1 253773505 8159600 2214497..2214781 1 NC_012947.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu0900 hypothetical protein; XRE family transcriptional regulator 2214781 8159600 ECBD_2112 Escherichia coli 'BL21-Gold(DE3)pLysS AG' XRE family transcriptional regulator YP_003036336.1 2214497 D 866768 CDS YP_003036337.1 253773506 8159601 2214902..2215567 1 NC_012947.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 2215567 8159601 ECBD_2113 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multiple drug resistance protein MarC YP_003036337.1 2214902 D 866768 CDS YP_003036338.1 253773507 8159602 complement(2215592..2216782) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1646 sugar efflux transporter; sugar efflux transporter 2216782 8159602 ECBD_2114 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar efflux transporter YP_003036338.1 2215592 R 866768 CDS YP_003036339.1 253773508 8159603 complement(2216932..2218047) 1 NC_012947.1 KEGG: ssn:SSON_1601 hypothetical protein; hypothetical protein 2218047 8159603 ECBD_2115 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036339.1 2216932 R 866768 CDS YP_003036340.1 253773509 8159604 complement(2218125..2219006) 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: elf:LF82_3566 uncharacterized HTH-type transcriptional regulator; LysR family transcriptional regulator 2219006 8159604 ECBD_2116 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003036340.1 2218125 R 866768 CDS YP_003036341.1 253773510 8159605 2219107..2220495 1 NC_012947.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 2220495 8159605 ECBD_2117 Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinate semialdehyde dehydrogenase YP_003036341.1 2219107 D 866768 CDS YP_003036342.1 253773511 8159606 2220559..2221485 1 NC_012947.1 catalyzes the formation of glutamate from glutamine; glutaminase 2221485 8159606 ECBD_2118 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutaminase YP_003036342.1 2220559 D 866768 CDS YP_003036343.1 253773512 8159607 2221485..2221844 1 NC_012947.1 KEGG: sfv:SFV_1582 hypothetical protein; hypothetical protein 2221844 8159607 ECBD_2119 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036343.1 2221485 D 866768 CDS YP_003036344.1 253773513 8159608 2221983..2223401 1 NC_012947.1 KEGG: sfv:SFV_1581 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2223401 8159608 ECBD_2120 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase YP_003036344.1 2221983 D 866768 CDS YP_003036345.1 253773514 8159609 2223628..2225079 1 NC_012947.1 catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 2225079 8159609 ECBD_2121 Escherichia coli 'BL21-Gold(DE3)pLysS AG' altronate oxidoreductase YP_003036345.1 2223628 D 866768 CDS YP_003036346.1 253773515 8159610 2225286..2226200 1 NC_012947.1 PFAM: protein of unknown function UPF0187; KEGG: sbc:SbBS512_E1689 hypothetical protein; hypothetical protein 2226200 8159610 ECBD_2122 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036346.1 2225286 D 866768 CDS YP_003036347.1 253773516 8159611 complement(2226204..2226962) 1 NC_012947.1 catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase 2226962 8159611 ECBD_2123 Escherichia coli 'BL21-Gold(DE3)pLysS AG' trans-aconitate 2-methyltransferase YP_003036347.1 2226204 R 866768 CDS YP_003036348.1 253773517 8159612 complement(2227019..2227309) 1 NC_012947.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: sdy:SDY_1624 autoinducer-2 (AI-2) modifying protein LsrG; autoinducer-2 (AI-2) modifying protein LsrG 2227309 8159612 ECBD_2124 Escherichia coli 'BL21-Gold(DE3)pLysS AG' autoinducer-2 (AI-2) modifying protein LsrG YP_003036348.1 2227019 R 866768 CDS YP_003036349.1 253773518 8159613 complement(2227333..2228208) 1 NC_012947.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: efe:EFER_1560 aldolase; aldolase 2228208 8159613 ECBD_2125 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldolase YP_003036349.1 2227333 R 866768 CDS YP_003036350.1 253773519 8159614 complement(2228235..2229257) 1 NC_012947.1 sugar ABC transporter substrate-binding protein 2229257 8159614 ECBD_2126 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar ABC transporter substrate-binding protein YP_003036350.1 2228235 R 866768 CDS YP_003036351.1 253773520 8159616 2230071..2231621 1 NC_012947.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Pertactin; outer membrane autotransporter barrel domain protein 2231621 8159616 ECBD_2128 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane autotransporter barrel domain protein YP_003036351.1 2230071 D 866768 CDS YP_003036352.1 253773521 8159617 2231649..2231747 1 NC_012947.1 hypothetical protein 2231747 8159617 ECBD_2129 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036352.1 2231649 D 866768 CDS YP_003036353.1 253773522 8159618 2231844..2232110 1 NC_012947.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ssn:SSON_1613 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator HipB 2232110 8159618 ECBD_2130 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator HipB YP_003036353.1 2231844 D 866768 CDS YP_003036354.1 253773523 8159619 2232110..2233432 1 NC_012947.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: elf:LF82_0996 protein HipA; HipA N-terminal domain protein 2233432 8159619 ECBD_2131 Escherichia coli 'BL21-Gold(DE3)pLysS AG' HipA N-terminal domain protein YP_003036354.1 2232110 D 866768 CDS YP_003036355.1 253773524 8159620 2233804..2234286 1 NC_012947.1 PFAM: fimbrial protein; KEGG: elf:LF82_p244 Fml fimbriae subunit; fimbrial protein 2234286 8159620 ECBD_2132 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003036355.1 2233804 D 866768 CDS YP_003036356.1 253773525 8159623 2238063..2238593 1 NC_012947.1 PFAM: fimbrial protein; fimbrial protein 2238593 8159623 ECBD_2135 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003036356.1 2238063 D 866768 CDS YP_003036357.1 253773526 8159624 2238606..2239109 1 NC_012947.1 PFAM: fimbrial protein; fimbrial protein 2239109 8159624 ECBD_2136 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003036357.1 2238606 D 866768 CDS YP_003036358.1 253773527 8159625 2239168..2240082 1 NC_012947.1 PFAM: FimH mannose-binding domain protein; fimbrial protein; KEGG: ssn:SSON_1621 adhesin; FimH mannose-binding domain protein 2240082 8159625 ECBD_2137 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FimH mannose-binding domain protein YP_003036358.1 2239168 D 866768 CDS YP_003036359.1 253773528 8159626 2240416..2242695 1 NC_012947.1 in Escherichia coli it may be involved in repression of type III secretion system (TTSS) genes of the host cell; involved with increased resistance to low pH; member of the prokaryotic molybdopterin-containing oxidoreductase family; oxidoreductase 2242695 8159626 ECBD_2138 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase YP_003036359.1 2240416 D 866768 CDS YP_003036360.1 253773529 8159627 2242943..2243140 1 NC_012947.1 KEGG: sfx:S1655 hypothetical protein; hypothetical protein 2243140 8159627 ECBD_2139 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036360.1 2242943 D 866768 CDS YP_003036361.1 253773530 8159628 2243215..2243976 1 NC_012947.1 regulates the cellular response to acid resistance; transcriptional regulator YdeO 2243976 8159628 ECBD_2140 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator YdeO YP_003036361.1 2243215 D 866768 CDS YP_003036362.1 253773531 8159629 2244378..2246060 1 NC_012947.1 PFAM: sulfatase; sulfatase 2246060 8159629 ECBD_2141 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfatase YP_003036362.1 2244378 D 866768 CDS YP_003036363.1 253773532 8159630 2246112..2247269 1 NC_012947.1 PFAM: radical SAM protein; KEGG: sfv:SFV_1723 enzyme; radical SAM protein 2247269 8159630 ECBD_2142 Escherichia coli 'BL21-Gold(DE3)pLysS AG' radical SAM protein YP_003036363.1 2246112 D 866768 CDS YP_003036364.1 253773533 8159631 2247560..2249245 1 NC_012947.1 PFAM: ABC transporter; ABC transporter domain protein; SbmABacA family protein; SMART: ATPase AAA; KEGG: ssn:SSON_1627 ATP-binding component of a transporter; ABC transporter 2249245 8159631 ECBD_2143 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003036364.1 2247560 D 866768 CDS YP_003036365.1 253773534 8159632 2249283..2251655 1 NC_012947.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ssn:SSON_1629 hypothetical protein; TonB-dependent receptor plug 2251655 8159632 ECBD_2144 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TonB-dependent receptor plug YP_003036365.1 2249283 D 866768 CDS YP_003036366.1 253773535 8159633 2251712..2254495 1 NC_012947.1 PFAM: peptidase M16 domain protein; KEGG: sbo:SBO_1562 peptidase; peptidase M16 domain protein 2254495 8159633 ECBD_2145 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase M16 domain protein YP_003036366.1 2251712 D 866768 CDS YP_003036367.1 253773536 8159634 2254857..2256257 1 NC_012947.1 TIGRFAM: glutamate decarboxylase; PFAM: pyridoxal-dependent decarboxylase; KEGG: sbo:SBO_1563 glutamate decarboxylase isozyme; glutamate decarboxylase 2256257 8159634 ECBD_2146 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate decarboxylase YP_003036367.1 2254857 D 866768 CDS YP_003036368.1 253773537 8159635 2256413..2257948 1 NC_012947.1 TIGRFAM: glutamate/g-aminobutyrate antiporter; PFAM: amino acid permease-associated region; KEGG: sbc:SbBS512_E1755 glutamate:gamma aminobutyrate antiporter; glutamate/g-aminobutyrate antiporter 2257948 8159635 ECBD_2147 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate/g-aminobutyrate antiporter YP_003036368.1 2256413 D 866768 CDS YP_003036369.1 253773538 8159636 2258079..2259398 1 NC_012947.1 PFAM: protein of unknown function DUF187; KEGG: ssn:SSON_1633 hypothetical protein; hypothetical protein 2259398 8159636 ECBD_2148 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036369.1 2258079 D 866768 CDS YP_003036370.1 253773539 8159637 2259775..2261157 1 NC_012947.1 KEGG: ssn:SSON_1634 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2261157 8159637 ECBD_2149 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase YP_003036370.1 2259775 D 866768 CDS YP_003036371.1 253773540 8159638 2261182..2263581 1 NC_012947.1 heme-regulated phosphodiesterase with phosphodiesterase activity with cAMP but not with cGMP, bis(p-nitrophenyl) phosphate or p-nitrophenyl phosphate; cAMP phosphodiesterase 2263581 8159638 ECBD_2150 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cAMP phosphodiesterase YP_003036371.1 2261182 D 866768 CDS YP_003036372.1 253773541 8159639 2263839..2264420 1 NC_012947.1 catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis; D-alanyl-D-alanine dipeptidase 2264420 8159639 ECBD_2151 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanyl-D-alanine dipeptidase YP_003036372.1 2263839 D 866768 CDS YP_003036373.1 253773542 8159640 2264434..2265984 1 NC_012947.1 PFAM: extracellular solute-binding protein family 5; extracellular solute-binding protein family 5 2265984 8159640 ECBD_2152 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 5 YP_003036373.1 2264434 D 866768 CDS YP_003036374.1 253773543 8159641 2265986..2267008 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sbo:SBO_1571 transporter permease protein; binding-protein-dependent transporters inner membrane component 2267008 8159641 ECBD_2153 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036374.1 2265986 D 866768 CDS YP_003036375.1 253773544 8159642 2267005..2267901 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ssn:SSON_1639 ATP-dependent peptide transporter membrane subunit; ATP-dependent peptide transporter membrane subunit 2267901 8159642 ECBD_2154 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent peptide transporter membrane subunit YP_003036375.1 2267005 D 866768 CDS YP_003036376.1 253773545 8159643 2267898..2268884 1 NC_012947.1 KEGG: sbc:SbBS512_E1747 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; peptide ABC transporter ATPase 2268884 8159643 ECBD_2155 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide ABC transporter ATPase YP_003036376.1 2267898 D 866768 CDS YP_003036377.1 253773546 8159885 2268877..2269803 1 NC_012947.1 KEGG: sbo:SBO_1574 ATP-binding component of a transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; peptide ABC transporter ATPase 2269803 8159885 ECBD_2156 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide ABC transporter ATPase YP_003036377.1 2268877 D 866768 CDS YP_003036378.1 253773547 8157263 complement(2269859..2270290) 1 NC_012947.1 PFAM: OsmC family protein; KEGG: sfv:SFV_1739 osmotically inducible protein; peroxiredoxin 2270290 8157263 ECBD_2157 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peroxiredoxin YP_003036378.1 2269859 R 866768 CDS YP_003036379.1 253773548 8157264 2270635..2270850 1 NC_012947.1 KEGG: efe:EFER_1498 biofilm-dependent modulation protein; biofilm-dependent modulation protein 2270850 8157264 ECBD_2158 Escherichia coli 'BL21-Gold(DE3)pLysS AG' biofilm-dependent modulation protein YP_003036379.1 2270635 D 866768 CDS YP_003036380.1 253773549 8157265 2270952..2271089 1 NC_012947.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 2271089 rpsV 8157265 rpsV Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal subunit S22 YP_003036380.1 2270952 D 866768 CDS YP_003036381.1 253773550 8157266 2271246..2272943 1 NC_012947.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 2272943 8157266 ECBD_2160 Escherichia coli 'BL21-Gold(DE3)pLysS AG' malate dehydrogenase YP_003036381.1 2271246 D 866768 CDS YP_003036382.1 253773551 8157267 2273077..2274087 1 NC_012947.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 2274087 8157267 ECBD_2161 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase YP_003036382.1 2273077 D 866768 CDS YP_003036383.1 253773552 8157268 2274233..2274517 1 NC_012947.1 KEGG: ssn:SSON_1647 hypothetical protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 2274517 8157268 ECBD_2162 Escherichia coli 'BL21-Gold(DE3)pLysS AG' XRE family transcriptional regulator YP_003036383.1 2274233 D 866768 CDS YP_003036384.1 253773553 8157269 complement(2274712..2275365) 1 NC_012947.1 nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma 2275365 8157269 ECBD_2163 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase-N subunit gamma YP_003036384.1 2274712 R 866768 CDS YP_003036385.1 253773554 8157270 complement(2275358..2276242) 1 NC_012947.1 TIGRFAM: formate dehydrogenase subunit beta; PFAM: formate dehydrogenase transmembrane domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_1746 formate dehydrogenase-N, nitrate-inducible, iron-sulfur subunit beta; formate dehydrogenase subunit beta 2276242 8157270 ECBD_2164 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase subunit beta YP_003036385.1 2275358 R 866768 CDS YP_003036386.1 253773555 8157271 complement(2276255..2279302) 1 NC_012947.1 KEGG: ssn:SSON_1650 formate dehydrogenase-N, nitrate-inducible, subunit alpha; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; formate dehydrogenase, subunit alpha 2279302 8157271 ECBD_2165 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase, subunit alpha YP_003036386.1 2276255 R 866768 CDS YP_003036387.1 253773556 8157272 2279591..2280415 1 NC_012947.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: elf:LF82_2811 inner membrane protein YddG; hypothetical protein 2280415 8157272 ECBD_2166 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036387.1 2279591 D 866768 CDS YP_003036388.1 253773557 8157273 2280674..2280964 1 NC_012947.1 KEGG: sbo:SBO_1585 outer membrane porin protein; outer membrane porin protein 2280964 8157273 ECBD_2167 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane porin protein YP_003036388.1 2280674 D 866768 CDS YP_003036389.1 253773558 8157275 2282642..2284030 1 NC_012947.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: elf:LF82_1467 nitrite extrusion protein 2; nitrite transporter 2284030 8157275 ECBD_2169 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrite transporter YP_003036389.1 2282642 D 866768 CDS YP_003036390.1 253773559 8157276 2284112..2287852 1 NC_012947.1 TIGRFAM: nitrate reductase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfv:SFV_1757 cryptic nitrate reductase 2, subunit alpha; nitrate reductase, subunit alpha 2287852 8157276 ECBD_2170 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate reductase, subunit alpha YP_003036390.1 2284112 D 866768 CDS YP_003036391.1 253773560 8157277 2287849..2289393 1 NC_012947.1 TIGRFAM: nitrate reductase subunit beta; nitrate reductase subunit beta 2289393 8157277 ECBD_2171 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate reductase subunit beta YP_003036391.1 2287849 D 866768 CDS YP_003036392.1 253773561 8157278 2289393..2290088 1 NC_012947.1 KEGG: ssn:SSON_1659 cryptic nitrate reductase 2, delta subunit, assembly function; TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: nitrate reductase subunit delta; nitrate reductase molybdenum cofactor assembly chaperone 2290088 8157278 ECBD_2172 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate reductase molybdenum cofactor assembly chaperone YP_003036392.1 2289393 D 866768 CDS YP_003036393.1 253773562 8157279 2290085..2290765 1 NC_012947.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: nitrate reductase subunit gamma; respiratory nitrate reductase, subunit gamma 2290765 8157279 ECBD_2173 Escherichia coli 'BL21-Gold(DE3)pLysS AG' respiratory nitrate reductase, subunit gamma YP_003036393.1 2290085 D 866768 CDS YP_003036394.1 253773563 8157281 complement(2291833..2292678) 1 NC_012947.1 PFAM: N-acetyltransferase; KEGG: ssn:SSON_1662 N-hydroxyarylamine O-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 2292678 8157281 ECBD_2175 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-hydroxyarylamine O-acetyltransferase YP_003036394.1 2291833 R 866768 CDS YP_003036395.1 253773564 8157282 2292851..2293420 1 NC_012947.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: elf:LF82_2812 uncharacterized protein YddH; flavin reductase domain protein FMN-binding 2293420 8157282 ECBD_2176 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flavin reductase domain protein FMN-binding YP_003036395.1 2292851 D 866768 CDS YP_003036396.1 253773565 8157283 complement(2293424..2293651) 1 NC_012947.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 2293651 8157283 ECBD_2177 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-oxalocrotonate tautomerase YP_003036396.1 2293424 R 866768 CDS YP_003036397.1 253773566 8157284 complement(2293684..2294475) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 receptor; transposase IS4 family protein 2294475 8157284 ECBD_2178 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003036397.1 2293684 R 866768 CDS YP_003036398.1 253773567 8157286 complement(2295887..2296369) 1 NC_012947.1 hypothetical protein 2296369 8157286 ECBD_2180 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036398.1 2295887 R 866768 CDS YP_003036399.1 253773568 8157288 complement(2299990..2300346) 1 NC_012947.1 KEGG: ssn:SSON_0520 Vgr protein; Vgr protein 2300346 8157288 ECBD_2182 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Vgr protein YP_003036399.1 2299990 R 866768 CDS YP_003036400.1 253773569 8157289 complement(2301166..2301378) 1 NC_012947.1 KEGG: sdy:SDY_1950 hypothetical protein; hypothetical protein 2301378 8157289 ECBD_2183 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036400.1 2301166 R 866768 CDS YP_003036401.1 253773570 8157290 complement(2301454..2302071) 1 NC_012947.1 KEGG: sbo:SBO_1593 transferase; transferase 2302071 8157290 ECBD_2184 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transferase YP_003036401.1 2301454 R 866768 CDS YP_003036402.1 253773571 8157291 complement(2302119..2302268) 1 NC_012947.1 KEGG: sbc:SbBS512_E1726 hypothetical protein; hypothetical protein 2302268 8157291 ECBD_2185 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036402.1 2302119 R 866768 CDS YP_003036403.1 253773572 8157292 2302338..2303837 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: sbc:SbBS512_E1725 L-asparagine permease; amino acid permease-associated region 2303837 8157292 ECBD_2186 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid permease-associated region YP_003036403.1 2302338 D 866768 CDS YP_003036404.1 253773573 8157293 complement(2303952..2305013) 1 NC_012947.1 KEGG: sbc:SbBS512_E1724 hypothetical protein; hypothetical protein 2305013 8157293 ECBD_2187 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036404.1 2303952 R 866768 CDS YP_003036405.1 253773574 8157294 2305255..2307357 1 NC_012947.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ssn:SSON_1682 outer membrane receptor for iron transport; TonB-dependent receptor 2307357 8157294 ECBD_2188 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TonB-dependent receptor YP_003036405.1 2305255 D 866768 CDS YP_003036406.1 253773575 8157295 complement(2307393..2308058) 1 NC_012947.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sfv:SFV_1761 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 2308058 8157295 ECBD_2189 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003036406.1 2307393 R 866768 CDS YP_003036407.1 253773576 8157296 complement(2308256..2309293) 1 NC_012947.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: sfv:SFV_1762 oxidoreductase; alcohol dehydrogenase zinc-binding domain protein 2309293 8157296 ECBD_2190 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase zinc-binding domain protein YP_003036407.1 2308256 R 866768 CDS YP_003036408.1 253773577 8157297 2309474..2309992 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E1718 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 2309992 8157297 ECBD_2191 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GCN5-related N-acetyltransferase YP_003036408.1 2309474 D 866768 CDS YP_003036409.1 253773578 8157298 2309989..2310438 1 NC_012947.1 PFAM: protein of unknown function DUF606; KEGG: sbo:SBO_1601 hypothetical protein; hypothetical protein 2310438 8157298 ECBD_2192 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036409.1 2309989 D 866768 CDS YP_003036410.1 253773579 8157299 complement(2310439..2310672) 1 NC_012947.1 KEGG: sfl:SF1771 hypothetical protein; hypothetical protein 2310672 8157299 ECBD_2193 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036410.1 2310439 R 866768 CDS YP_003036411.1 253773580 8157300 complement(2310758..2310931) 1 NC_012947.1 KEGG: sdy:SDY_1729 hypothetical protein; hypothetical protein 2310931 8157300 ECBD_2194 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036411.1 2310758 R 866768 CDS YP_003036412.1 253773581 8157301 complement(2311318..2312742) 1 NC_012947.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 2312742 8157301 ECBD_2195 Escherichia coli 'BL21-Gold(DE3)pLysS AG' gamma-aminobutyraldehyde dehydrogenase YP_003036412.1 2311318 R 866768 CDS YP_003036413.1 253773582 8157302 complement(2312764..2313558) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfv:SFV_1771 transporter permease protein; binding-protein-dependent transporters inner membrane component 2313558 8157302 ECBD_2196 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036413.1 2312764 R 866768 CDS YP_003036414.1 253773583 8157303 complement(2313548..2314489) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; binding-protein-dependent transporters inner membrane component 2314489 8157303 ECBD_2197 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036414.1 2313548 R 866768 CDS YP_003036415.1 253773584 8157304 complement(2314490..2315503) 1 NC_012947.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: ssn:SSON_1696 ATP-binding component of a transporter; ABC transporter 2315503 8157304 ECBD_2198 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003036415.1 2314490 R 866768 CDS YP_003036416.1 253773585 8157305 complement(2315521..2316666) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1697 transporter; extracellular solute-binding protein family 1 2316666 8157305 ECBD_2199 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 1 YP_003036416.1 2315521 R 866768 CDS YP_003036417.1 253773586 8157306 complement(2316911..2318317) 1 NC_012947.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: ssn:SSON_1698 multi modular; transcriptional regulator; also ATP-binding component of a transporter; GntR family transcriptional regulator 2318317 8157306 ECBD_2200 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GntR family transcriptional regulator YP_003036417.1 2316911 R 866768 CDS YP_003036418.1 253773587 8157307 complement(2318396..2318833) 1 NC_012947.1 PFAM: protein of unknown function UPF0150; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sdy:SDY_1736 hypothetical protein; XRE family transcriptional regulator 2318833 8157307 ECBD_2201 Escherichia coli 'BL21-Gold(DE3)pLysS AG' XRE family transcriptional regulator YP_003036418.1 2318396 R 866768 CDS YP_003036419.1 253773588 8157308 complement(2318858..2319034) 1 NC_012947.1 PFAM: YcfA family protein; KEGG: cko:CKO_01475 hypothetical protein; YcfA family protein 2319034 8157308 ECBD_2202 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YcfA family protein YP_003036419.1 2318858 R 866768 CDS YP_003036420.1 253773589 8157309 2319316..2319486 1 NC_012947.1 KEGG: ssn:SSON_1702 hypothetical protein; hypothetical protein 2319486 8157309 ECBD_2203 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036420.1 2319316 D 866768 CDS YP_003036421.1 253773590 8157310 complement(2319578..2321539) 1 NC_012947.1 PFAM: peptidase U32; peptidase U32 2321539 8157310 ECBD_2204 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase U32 YP_003036421.1 2319578 R 866768 CDS YP_003036422.1 253773591 8157311 complement(2321612..2322148) 1 NC_012947.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: ssn:SSON_1704 hypothetical protein; XRE family transcriptional regulator 2322148 8157311 ECBD_2205 Escherichia coli 'BL21-Gold(DE3)pLysS AG' XRE family transcriptional regulator YP_003036422.1 2321612 R 866768 CDS YP_003036423.1 253773592 8157312 2322240..2323415 1 NC_012947.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transporter; xanthine/uracil/vitamin C permease; benzoate transporter 2323415 8157312 ECBD_2206 Escherichia coli 'BL21-Gold(DE3)pLysS AG' benzoate transporter YP_003036423.1 2322240 D 866768 CDS YP_003036424.1 253773593 8157313 complement(2323455..2324663) 1 NC_012947.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ssn:SSON_1709 virulence protein; transposase, IS605 OrfB family 2324663 8157313 ECBD_2207 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase, IS605 OrfB family YP_003036424.1 2323455 R 866768 CDS YP_003036425.1 253773594 8157315 complement(2325195..2325863) 1 NC_012947.1 KEGG: elf:LF82_2797 uncharacterized lipoprotein YdcL; hypothetical protein 2325863 8157315 ECBD_2209 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036425.1 2325195 R 866768 CDS YP_003036426.1 253773595 8157316 complement(2326166..2326759) 1 NC_012947.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 2326759 8157316 ECBD_2210 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tellurite resistance protein TehB YP_003036426.1 2326166 R 866768 CDS YP_003036427.1 253773596 8157317 complement(2326756..2327748) 1 NC_012947.1 TIGRFAM: C4-dicarboxylate transporter/malic acid transporter; PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sfv:SFV_1777 potassium-tellurite ethidium and proflavin transporter; potassium-tellurite ethidium and proflavin transporter 2327748 8157317 ECBD_2211 Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium-tellurite ethidium and proflavin transporter YP_003036427.1 2326756 R 866768 CDS YP_003036428.1 253773597 8157318 2327872..2328852 1 NC_012947.1 hypothetical protein 2328852 8157318 ECBD_2212 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036428.1 2327872 D 866768 CDS YP_003036429.1 253773598 8157319 complement(2328844..2329383) 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: elf:LF82_1889 ribosomal-protein-serine acetyltransferase; ribosomal-protein-L7/L12-serine acetyltransferase 2329383 8157319 ECBD_2213 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosomal-protein-L7/L12-serine acetyltransferase YP_003036429.1 2328844 R 866768 CDS YP_003036430.1 253773599 8157320 complement(2329446..2329670) 1 NC_012947.1 PFAM: protein of unknown function DUF465; KEGG: sfv:SFV_1780 hypothetical protein; hypothetical protein 2329670 8157320 ECBD_2214 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036430.1 2329446 R 866768 CDS YP_003036431.1 253773600 8157321 complement(2329810..2331429) 1 NC_012947.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 2331429 mdoD 8157321 mdoD Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucan biosynthesis protein D YP_003036431.1 2329810 R 866768 CDS YP_003036432.1 253773601 8157322 complement(2331690..2333033) 1 NC_012947.1 PFAM: protein of unknown function DUF1338; KEGG: ssn:SSON_1719 hypothetical protein; hypothetical protein 2333033 8157322 ECBD_2216 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036432.1 2331690 R 866768 CDS YP_003036433.1 253773602 8157323 2333250..2334173 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_1720 transcriptional regulator LysR-type; LysR family transcriptional regulator 2334173 8157323 ECBD_2217 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003036433.1 2333250 D 866768 CDS YP_003036434.1 253773603 8157324 complement(2334211..2335851) 1 NC_012947.1 PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; ligand binding Tar domain protein; KEGG: sfx:S1485 methyl-accepting chemotaxis protein III, ribose sensor receptor; methyl-accepting chemotaxis sensory transducer 2335851 8157324 ECBD_2218 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyl-accepting chemotaxis sensory transducer YP_003036434.1 2334211 R 866768 CDS YP_003036435.1 253773604 8157325 2336192..2336359 1 NC_012947.1 KEGG: ssn:SSON_1722 hypothetical protein; hypothetical protein 2336359 8157325 ECBD_2219 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036435.1 2336192 D 866768 CDS YP_003036436.1 253773605 8157326 complement(2336471..2336644) 1 NC_012947.1 KEGG: ssn:SSON_1723 hypothetical protein; hypothetical protein 2336644 8157326 ECBD_2220 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036436.1 2336471 R 866768 CDS YP_003036437.1 253773606 8157327 complement(2336889..2337419) 1 NC_012947.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 2337419 8157327 ECBD_2221 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome b561 YP_003036437.1 2336889 R 866768 CDS YP_003036438.1 253773607 8157328 complement(2337518..2338021) 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 2338021 8157328 ECBD_2222 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003036438.1 2337518 R 866768 CDS YP_003036439.1 253773608 8157329 complement(2337940..2338215) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 2338215 8157329 ECBD_2223 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003036439.1 2337940 R 866768 CDS YP_003036440.1 253773609 8157330 2338384..2339385 1 NC_012947.1 KEGG: ssn:SSON_1725 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2339385 8157330 ECBD_2224 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glyceraldehyde-3-phosphate dehydrogenase YP_003036440.1 2338384 D 866768 CDS YP_003036441.1 253773610 8157331 complement(2339427..2340866) 1 NC_012947.1 NAD-linked; aldehyde dehydrogenase A 2340866 8157331 ECBD_2225 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldehyde dehydrogenase A YP_003036441.1 2339427 R 866768 CDS YP_003036442.1 253773611 8157332 complement(2341063..2341863) 1 NC_012947.1 PFAM: protein of unknown function DUF218; hypothetical protein 2341863 8157332 ECBD_2226 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036442.1 2341063 R 866768 CDS YP_003036443.1 253773612 8157333 complement(2342135..2346037) 1 NC_012947.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 2346037 8157333 ECBD_2227 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent RNA helicase HrpA YP_003036443.1 2342135 R 866768 CDS YP_003036444.1 253773613 8157334 2346238..2346843 1 NC_012947.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 2346843 8157334 ECBD_2228 Escherichia coli 'BL21-Gold(DE3)pLysS AG' azoreductase YP_003036444.1 2346238 D 866768 CDS YP_003036445.1 253773614 8157335 complement(2346894..2348210) 1 NC_012947.1 PFAM: Dual specificity protein phosphatase; phosphoesterase PA-phosphatase related; SMART: Dual specificity protein phosphatase; protein-tyrosine phosphatase, catalytic; KEGG: sbc:SbBS512_E1631 PAP2 family protein; dual specificity phosphatase 2348210 8157335 ECBD_2229 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dual specificity phosphatase YP_003036445.1 2346894 R 866768 CDS YP_003036446.1 253773615 8157336 complement(2348200..2349957) 1 NC_012947.1 KEGG: sdy:SDY_1779 hypothetical protein; hypothetical protein 2349957 8157336 ECBD_2230 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036446.1 2348200 R 866768 CDS YP_003036447.1 253773616 8157337 complement(2349973..2350869) 1 NC_012947.1 PFAM: phosphatidate cytidylyltransferase; KEGG: elf:LF82_3553 uncharacterized protein YnbB; phosphatidate cytidylyltransferase 2350869 8157337 ECBD_2231 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphatidate cytidylyltransferase YP_003036447.1 2349973 R 866768 CDS YP_003036448.1 253773617 8157338 complement(2350869..2351474) 1 NC_012947.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: efe:EFER_1593 conserved hypothetical protein; inner membrane protein; CDP-alcohol phosphatidyltransferase 2351474 8157338 ECBD_2232 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CDP-alcohol phosphatidyltransferase YP_003036448.1 2350869 R 866768 CDS YP_003036449.1 253773618 8157339 complement(2351645..2353951) 1 NC_012947.1 hypothetical protein 2353951 8157339 ECBD_2233 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036449.1 2351645 R 866768 CDS YP_003036450.1 253773619 8157341 complement(2354566..2355432) 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; Integrase catalytic region 2355432 8157341 ECBD_2235 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003036450.1 2354566 R 866768 CDS YP_003036451.1 253773620 8158744 complement(2355429..2355728) 1 NC_012947.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2355728 8158744 ECBD_2236 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS3/IS911 family protein YP_003036451.1 2355429 R 866768 CDS YP_003036452.1 253773621 8159077 complement(2357805..2359304) 1 NC_012947.1 PFAM: aldehyde dehydrogenase; KEGG: efe:EFER_1612 phenylacetaldehyde dehydrogenase; Phenylacetaldehyde dehydrogenase 2359304 8159077 ECBD_2238 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Phenylacetaldehyde dehydrogenase YP_003036452.1 2357805 R 866768 CDS YP_003036453.1 253773622 8159078 2359540..2360445 1 NC_012947.1 activator of genes involved in phenylacetic acid catabolism; FeaR family transcriptional regulator 2360445 8159078 ECBD_2239 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FeaR family transcriptional regulator YP_003036453.1 2359540 D 866768 CDS YP_003036454.1 253773623 8159079 complement(2360617..2360943) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sbo:SBO_1683 hypothetical protein; hypothetical protein 2360943 8159079 ECBD_2240 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036454.1 2360617 R 866768 CDS YP_003036455.1 253773624 8159080 complement(2360951..2361136) 1 NC_012947.1 KEGG: ssn:SSON_1742 hypothetical protein; hypothetical protein 2361136 8159080 ECBD_2241 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036455.1 2360951 R 866768 CDS YP_003036456.1 253773625 8159081 complement(2361133..2363772) 1 NC_012947.1 KEGG: sbo:SBO_1685 hypothetical protein; hypothetical protein 2363772 8159081 ECBD_2242 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036456.1 2361133 R 866768 CDS YP_003036457.1 253773626 8159082 2363980..2364969 1 NC_012947.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sbc:SbBS512_E1618 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 2364969 8159082 ECBD_2243 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003036457.1 2363980 D 866768 CDS YP_003036458.1 253773627 8159083 2365080..2365502 1 NC_012947.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ssn:SSON_1745 heat-inducible protein; heat-inducible protein 2365502 8159083 ECBD_2244 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat-inducible protein YP_003036458.1 2365080 D 866768 CDS YP_003036459.1 253773628 8159084 complement(2365499..2365765) 1 NC_012947.1 KEGG: ssn:SSON_1746 cytoplasmic protein; cytoplasmic protein 2365765 8159084 ECBD_2245 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic protein YP_003036459.1 2365499 R 866768 CDS YP_003036460.1 253773629 8159085 2366039..2369563 1 NC_012947.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase 2369563 8159085 ECBD_2246 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvate ferredoxin/flavodoxin oxidoreductase YP_003036460.1 2366039 D 866768 CDS YP_003036461.1 253773630 8159086 2369930..2371063 1 NC_012947.1 PFAM: porin Gram-negative type; KEGG: sbc:SbBS512_E1614 outer membrane protein N; porin Gram-negative type 2371063 8159086 ECBD_2247 Escherichia coli 'BL21-Gold(DE3)pLysS AG' porin Gram-negative type YP_003036461.1 2369930 D 866768 CDS YP_003036462.1 253773631 8159087 2371204..2371638 1 NC_012947.1 PFAM: UspA domain protein; KEGG: ssn:SSON_1749 filament protein; UspA domain protein 2371638 8159087 ECBD_2248 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UspA domain protein YP_003036462.1 2371204 D 866768 CDS YP_003036463.1 253773632 8159088 2372599..2372832 1 NC_012947.1 KEGG: elf:LF82_2833 uncharacterized protein YdfK; hypothetical protein 2372832 8159088 ECBD_2249 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036463.1 2372599 D 866768 CDS YP_003036464.1 253773633 8159089 2373149..2373739 1 NC_012947.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: elf:LF82_1666 DNA-invertase from lambdoid prophage Rac; resolvase 2373739 8159089 ECBD_2250 Escherichia coli 'BL21-Gold(DE3)pLysS AG' resolvase YP_003036464.1 2373149 D 866768 CDS YP_003036465.1 253773634 8159090 complement(2373967..2374260) 1 NC_012947.1 KEGG: elf:LF82_p183 hypothetical protein; hypothetical protein 2374260 8159090 ECBD_2251 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036465.1 2373967 R 866768 CDS YP_003036466.1 253773635 8159091 complement(2374273..2374551) 1 NC_012947.1 KEGG: elf:LF82_p182 hypothetical protein; hypothetical protein 2374551 8159091 ECBD_2252 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036466.1 2374273 R 866768 CDS YP_003036467.1 253773636 8159092 complement(2374548..2375285) 1 NC_012947.1 KEGG: elf:LF82_p261 hypothetical protein; hypothetical protein 2375285 8159092 ECBD_2253 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036467.1 2374548 R 866768 CDS YP_003036468.1 253773637 8159093 complement(2375233..2375628) 1 NC_012947.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: ypi:YpsIP31758_2231 ParB family protein; ParB domain protein nuclease 2375628 8159093 ECBD_2254 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ParB domain protein nuclease YP_003036468.1 2375233 R 866768 CDS YP_003036469.1 253773638 8159094 complement(2375766..2377223) 1 NC_012947.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: efe:EFER_1950 trk system potassium uptake protein; potassium uptake protein, TrkH family 2377223 8159094 ECBD_2255 Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium uptake protein, TrkH family YP_003036469.1 2375766 R 866768 CDS YP_003036470.1 253773639 8159095 complement(2377361..2377825) 1 NC_012947.1 PFAM: lysis protein; KEGG: elf:LF82_2080 Rz endopeptidase from lambdoid prophage DLP12; lysis protein 2377825 8159095 ECBD_2256 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysis protein YP_003036470.1 2377361 R 866768 CDS YP_003036471.1 253773640 8159096 complement(2377822..2378355) 1 NC_012947.1 PFAM: glycoside hydrolase family 24; KEGG: sbc:SbBS512_E1450 phage lysozyme; Lysozyme 2378355 8159096 ECBD_2257 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lysozyme YP_003036471.1 2377822 R 866768 CDS YP_003036472.1 253773641 8159097 2378461..2378733 1 NC_012947.1 KEGG: sbc:SbBS512_E0946 hypothetical protein; hypothetical protein 2378733 8159097 ECBD_2258 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036472.1 2378461 D 866768 CDS YP_003036473.1 253773642 8159098 complement(2378699..2379043) 1 NC_012947.1 PFAM: protein of unknown function DUF1327; KEGG: sbc:SbBS512_E0945 hypothetical protein; hypothetical protein 2379043 8159098 ECBD_2259 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036473.1 2378699 R 866768 CDS YP_003036474.1 253773643 8159099 complement(2379048..2379260) 1 NC_012947.1 PFAM: Lysis S family protein; KEGG: elf:LF82_0578 lysis protein S homolog from lambdoid prophage DLP12; Lysis S family protein 2379260 8159099 ECBD_2260 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lysis S family protein YP_003036474.1 2379048 R 866768 CDS YP_003036475.1 253773644 8159100 2379259..2379393 1 NC_012947.1 hypothetical protein 2379393 8159100 ECBD_2261 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036475.1 2379259 D 866768 CDS YP_003036476.1 253773645 8159101 2379404..2379559 1 NC_012947.1 PFAM: protein of unknown function DUF1391; KEGG: sbc:SbBS512_E0694 hypothetical protein; hypothetical protein 2379559 8159101 ECBD_2262 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036476.1 2379404 D 866768 CDS YP_003036477.1 253773646 8159102 complement(2379556..2380044) 1 NC_012947.1 KEGG: set:SEN1382 phage membrane protein; hypothetical protein 2380044 8159102 ECBD_2263 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036477.1 2379556 R 866768 CDS YP_003036478.1 253773647 8159103 2380486..2380707 1 NC_012947.1 Rac prophage Kil protein; Kil overexpression leads to morphological defects and inhibits cell division; FtsZ inhibitor protein 2380707 kil 8159103 kil Escherichia coli 'BL21-Gold(DE3)pLysS AG' FtsZ inhibitor protein YP_003036478.1 2380486 D 866768 CDS YP_003036479.1 253773648 8159104 2380707..2380877 1 NC_012947.1 KEGG: sty:STY2071 bacteriophage protein; bacteriophage protein 2380877 8159104 ECBD_2265 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bacteriophage protein YP_003036479.1 2380707 D 866768 CDS YP_003036480.1 253773649 8159105 2380952..2381227 1 NC_012947.1 Rac prophage hypothetical protein; hypothetical protein 2381227 8159105 ECBD_2266 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036480.1 2380952 D 866768 CDS YP_003036481.1 253773650 8159107 2382421..2383230 1 NC_012947.1 TIGRFAM: RecT protein; PFAM: RecT protein; KEGG: spq:SPAB_02270 recombination and repair protein RecT; recombination and repair protein RecT 2383230 recT 8159107 recT Escherichia coli 'BL21-Gold(DE3)pLysS AG' recombination and repair protein RecT YP_003036481.1 2382421 D 866768 CDS YP_003036482.1 253773651 8159108 2383474..2383683 1 NC_012947.1 Rac prophage; hypothetical protein 2383683 8159108 ECBD_2269 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036482.1 2383474 D 866768 CDS YP_003036483.1 253773652 8159109 2383762..2383977 1 NC_012947.1 PFAM: protein of unknown function DUF1233 excisionase KEGG: sfl:SF1369 hypothetical protein; hypothetical protein 2383977 8159109 ECBD_2270 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036483.1 2383762 D 866768 CDS YP_003036484.1 253773653 8159110 2383979..2385214 1 NC_012947.1 PFAM: integrase; KEGG: sbo:SBO_1716 transposase; integrase 2385214 8159110 ECBD_2271 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integrase YP_003036484.1 2383979 D 866768 CDS YP_003036485.1 253773654 8159111 2385266..2386201 1 NC_012947.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2386201 8159111 ECBD_2272 Escherichia coli 'BL21-Gold(DE3)pLysS AG' C32 tRNA thiolase YP_003036485.1 2385266 D 866768 CDS YP_003036486.1 253773655 8159112 complement(2386330..2387703) 1 NC_012947.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 2387703 8159112 ECBD_2273 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent RNA helicase DbpA YP_003036486.1 2386330 R 866768 CDS YP_003036487.1 253773656 8159113 complement(2387733..2387906) 1 NC_012947.1 KEGG: efe:EFER_1627 hypothetical protein; hypothetical protein 2387906 8159113 ECBD_2274 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036487.1 2387733 R 866768 CDS YP_003036488.1 253773657 8159114 complement(2388181..2389164) 1 NC_012947.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sdy:SDY_1424 zinc transporter; zinc transporter 2389164 zntB 8159114 zntB Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc transporter YP_003036488.1 2388181 R 866768 CDS YP_003036489.1 253773658 8159115 2389419..2390651 1 NC_012947.1 KEGG: sbo:SBO_1720 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; hypothetical protein; SMART: GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase with PAS/PAC sensor 2390651 8159115 ECBD_2276 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase with PAS/PAC sensor YP_003036489.1 2389419 D 866768 CDS YP_003036490.1 253773659 8159116 complement(2390672..2391235) 1 NC_012947.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: elf:LF82_2783 uncharacterized protein ydal; Smr protein/MutS2 2391235 8159116 ECBD_2277 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Smr protein/MutS2 YP_003036490.1 2390672 R 866768 CDS YP_003036491.1 253773660 8159117 complement(2391565..2392473) 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_1792 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 2392473 8159117 ECBD_2278 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003036491.1 2391565 R 866768 CDS YP_003036492.1 253773661 8159118 2392649..2393959 1 NC_012947.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ssn:SSON_1793 aminohydrolase; amidohydrolase 2393959 8159118 ECBD_2279 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amidohydrolase YP_003036492.1 2392649 D 866768 CDS YP_003036493.1 253773662 8159119 2393959..2395404 1 NC_012947.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ssn:SSON_1794 hypothetical protein; amidohydrolase 2395404 8159119 ECBD_2280 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amidohydrolase YP_003036493.1 2393959 D 866768 CDS YP_003036494.1 253773663 8159120 2395441..2396967 1 NC_012947.1 TIGRFAM: AbgT transporter family; PFAM: AbgT transporter; aminobenzoyl-glutamate transporter 2396967 abgT 8159120 abgT Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminobenzoyl-glutamate transporter YP_003036494.1 2395441 D 866768 CDS YP_003036495.1 253773664 8159121 2396978..2397493 1 NC_012947.1 KEGG: ssn:SSON_1798 O-6-alkylguanine-DNA:cysteine-protein methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 2397493 8159121 ECBD_2282 Escherichia coli 'BL21-Gold(DE3)pLysS AG' O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_003036495.1 2396978 D 866768 CDS YP_003036496.1 253773665 8159122 2398592..2399542 1 NC_012947.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2399542 8159122 ECBD_2284 Escherichia coli 'BL21-Gold(DE3)pLysS AG' universal stress protein UspE YP_003036496.1 2398592 D 866768 CDS YP_003036497.1 253773666 8159123 complement(2399592..2399849) 1 NC_012947.1 KEGG: ssn:SSON_1801 hypothetical protein; hypothetical protein 2399849 8159123 ECBD_2285 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036497.1 2399592 R 866768 CDS YP_003036498.1 253773667 8159124 2400093..2401124 1 NC_012947.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sbc:SbBS512_E1570 transporter small conductance mechanosensitive ion channel family; MscS Mechanosensitive ion channel 2401124 8159124 ECBD_2286 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MscS Mechanosensitive ion channel YP_003036498.1 2400093 D 866768 CDS YP_003036499.1 253773668 8159125 complement(2401175..2402788) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_1804 transport periplasmic protein; extracellular solute-binding protein family 5 2402788 8159125 ECBD_2287 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 5 YP_003036499.1 2401175 R 866768 CDS YP_003036500.1 253773669 8159126 complement(2403125..2404024) 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_1734 transcriptional regulator LysR-type; LysR family transcriptional regulator 2404024 8159126 ECBD_2288 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003036500.1 2403125 R 866768 CDS YP_003036501.1 253773670 8159127 2404162..2405082 1 NC_012947.1 KEGG: ssn:SSON_1806 hypothetical protein; hypothetical protein 2405082 8159127 ECBD_2289 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036501.1 2404162 D 866768 CDS YP_003036502.1 253773671 8159128 2405153..2405335 1 NC_012947.1 KEGG: ssn:SSON_1810 hypothetical protein; hypothetical protein 2405335 8159128 ECBD_2290 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036502.1 2405153 D 866768 CDS YP_003036503.1 253773672 8159129 2405417..2406145 1 NC_012947.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: ssn:SSON_1812 murein peptide amidase A; murein peptide amidase A 2406145 8159129 ECBD_2291 Escherichia coli 'BL21-Gold(DE3)pLysS AG' murein peptide amidase A YP_003036503.1 2405417 D 866768 CDS YP_003036504.1 253773673 8159130 complement(2406120..2407085) 1 NC_012947.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sfv:SFV_1341 muconate cycloisomerase I; mandelate racemase/muconate lactonizing protein 2407085 8159130 ECBD_2292 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mandelate racemase/muconate lactonizing protein YP_003036504.1 2406120 R 866768 CDS YP_003036505.1 253773674 8159131 2407204..2407710 1 NC_012947.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 2407710 tpx 8159131 tpx Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiol peroxidase YP_003036505.1 2407204 D 866768 CDS YP_003036506.1 253773675 8159132 complement(2407754..2409295) 1 NC_012947.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 2409295 8159132 ECBD_2294 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator TyrR YP_003036506.1 2407754 R 866768 CDS YP_003036507.1 253773676 8159133 complement(2409443..2410504) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: elf:LF82_2767 UPF0283 membrane protein YcjF; hypothetical protein 2410504 8159133 ECBD_2295 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036507.1 2409443 R 866768 CDS YP_003036508.1 253773677 8159134 complement(2410501..2411898) 1 NC_012947.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: sbc:SbBS512_E1554 hypothetical protein; hypothetical protein 2411898 8159134 ECBD_2296 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036508.1 2410501 R 866768 CDS YP_003036509.1 253773678 8159135 2412054..2413052 1 NC_012947.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sbc:SbBS512_E1553 LacI family transcriptional regulator; LacI family transcriptional regulator 2413052 8159135 ECBD_2297 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LacI family transcriptional regulator YP_003036509.1 2412054 D 866768 CDS YP_003036510.1 253773679 8159136 complement(2413163..2414068) 1 NC_012947.1 hypothetical protein 2414068 8159136 ECBD_2298 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036510.1 2413163 R 866768 CDS YP_003036511.1 253773680 8159137 complement(2414113..2415195) 1 NC_012947.1 PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: ATPase AAA; ABC transporter 2415195 8159137 ECBD_2299 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003036511.1 2414113 R 866768 CDS YP_003036512.1 253773681 8159138 complement(2415209..2415868) 1 NC_012947.1 TIGRFAM: beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; beta-phosphoglucomutase 2415868 8159138 ECBD_2300 Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-phosphoglucomutase YP_003036512.1 2415209 R 866768 CDS YP_003036513.1 253773682 8159139 complement(2415865..2418132) 1 NC_012947.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: ssn:SSON_1824 hypothetical protein; glycoside hydrolase family 65 central catalytic 2418132 8159139 ECBD_2301 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase family 65 central catalytic YP_003036513.1 2415865 R 866768 CDS YP_003036514.1 253773683 8159140 complement(2418129..2419184) 1 NC_012947.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: elf:LF82_2775 oxidoreductase YcjS; oxidoreductase domain protein 2419184 8159140 ECBD_2302 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase domain protein YP_003036514.1 2418129 R 866768 CDS YP_003036515.1 253773684 8159141 complement(2419194..2419982) 1 NC_012947.1 PFAM: xylose isomerase; KEGG: elf:LF82_2774 uncharacterized protein YcjR; xylose isomerase 2419982 8159141 ECBD_2303 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xylose isomerase YP_003036515.1 2419194 R 866768 CDS YP_003036516.1 253773685 8159142 complement(2420001..2421053) 1 NC_012947.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: sfv:SFV_1329 oxidoreductase; alcohol dehydrogenase zinc-binding domain protein 2421053 8159142 ECBD_2304 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase zinc-binding domain protein YP_003036516.1 2420001 R 866768 CDS YP_003036517.1 253773686 8159143 complement(2421084..2421926) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfv:SFV_1328 transporter permease protein; binding-protein-dependent transporters inner membrane component 2421926 8159143 ECBD_2305 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036517.1 2421084 R 866768 CDS YP_003036518.1 253773687 8159144 complement(2421913..2422794) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ssn:SSON_1829 binding-protein dependent transporter; binding-protein-dependent transporters inner membrane component 2422794 8159144 ECBD_2306 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036518.1 2421913 R 866768 CDS YP_003036519.1 253773688 8159145 complement(2422815..2424107) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 1; extracellular solute-binding protein family 1 2424107 8159145 ECBD_2307 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 1 YP_003036519.1 2422815 R 866768 CDS YP_003036520.1 253773689 8159146 complement(2424121..2425800) 1 NC_012947.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; alpha amylase catalytic region 2425800 8159146 ECBD_2308 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha amylase catalytic region YP_003036520.1 2424121 R 866768 CDS YP_003036521.1 253773690 8159147 complement(2426013..2426327) 1 NC_012947.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase 2426327 8159147 ECBD_2309 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiosulfate:cyanide sulfurtransferase YP_003036521.1 2426013 R 866768 CDS YP_003036522.1 253773691 8159148 complement(2426402..2426623) 1 NC_012947.1 TIGRFAM: phage shock protein PspD; KEGG: ssn:SSON_1833 peripheral inner membrane phage-shock protein; peripheral inner membrane phage-shock protein 2426623 8159148 ECBD_2310 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peripheral inner membrane phage-shock protein YP_003036522.1 2426402 R 866768 CDS YP_003036523.1 253773692 8159149 complement(2426632..2426991) 1 NC_012947.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 2426991 8159149 ECBD_2311 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator PspC YP_003036523.1 2426632 R 866768 CDS YP_003036524.1 253773693 8159150 complement(2426991..2427215) 1 NC_012947.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 2427215 pspB 8159150 pspB Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage shock protein B YP_003036524.1 2426991 R 866768 CDS YP_003036525.1 253773694 8159151 complement(2427269..2427937) 1 NC_012947.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 2427937 8159151 ECBD_2313 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage shock protein PspA YP_003036525.1 2427269 R 866768 CDS YP_003036526.1 253773695 8159152 2428104..2429081 1 NC_012947.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 2429081 pspF 8159152 pspF Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage shock protein operon transcriptional activator YP_003036526.1 2428104 D 866768 CDS YP_003036527.1 253773696 8159153 complement(2429201..2430466) 1 NC_012947.1 putrescine-inducible GABA aminotransferase; catalyzes the formation of glutamate and succinate semialdehyde from 4-aminobutyrate and 2-oxoglutarate; 4-aminobutyrate transaminase 2430466 8159153 ECBD_2315 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-aminobutyrate transaminase YP_003036527.1 2429201 R 866768 CDS YP_003036528.1 253773697 8159154 complement(2430504..2431784) 1 NC_012947.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2431784 8159154 ECBD_2316 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FAD dependent oxidoreductase YP_003036528.1 2430504 R 866768 CDS YP_003036529.1 253773698 8159155 complement(2431786..2433273) 1 NC_012947.1 catalyzes the formation of gamma-glutamyl-gamma-aminobutyrate from gamma-glutamyl-gamma-aminobutyraldehyde; involved in putrescine degradation; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase 2433273 8159155 ECBD_2317 Escherichia coli 'BL21-Gold(DE3)pLysS AG' gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase YP_003036529.1 2431786 R 866768 CDS YP_003036530.1 253773699 8159156 complement(2433548..2434105) 1 NC_012947.1 regulates genes involved in putrescine degradation; DNA-binding transcriptional repressor PuuR 2434105 8159156 ECBD_2318 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor PuuR YP_003036530.1 2433548 R 866768 CDS YP_003036531.1 253773700 8158074 complement(2434132..2434896) 1 NC_012947.1 catalyzes the degradation of gamma-glutamyl-gamma-aminobutyrate into glutamate and gamma-aminobutyrate; gamma-glutamyl-gamma-aminobutyrate hydrolase 2434896 puuD 8158074 puuD Escherichia coli 'BL21-Gold(DE3)pLysS AG' gamma-glutamyl-gamma-aminobutyrate hydrolase YP_003036531.1 2434132 R 866768 CDS YP_003036532.1 253773701 8158075 2435108..2436526 1 NC_012947.1 PFAM: glutamine synthetase; glutamate--putrescine ligase 2436526 8158075 ECBD_2320 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate--putrescine ligase YP_003036532.1 2435108 D 866768 CDS YP_003036533.1 253773702 8158076 2436829..2438214 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: ssn:SSON_1844 amino acid/amine transporter; amino acid permease-associated region 2438214 8158076 ECBD_2321 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid permease-associated region YP_003036533.1 2436829 D 866768 CDS YP_003036534.1 253773703 8158077 2438348..2438593 1 NC_012947.1 KEGG: sdy:SDY_1637 hypothetical protein; hypothetical protein 2438593 8158077 ECBD_2322 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036534.1 2438348 D 866768 CDS YP_003036535.1 253773704 8158078 2438905..2440548 1 NC_012947.1 PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_1846 peptide transport periplasmic protein-like protein; extracellular solute-binding protein family 5 2440548 8158078 ECBD_2323 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 5 YP_003036535.1 2438905 D 866768 CDS YP_003036536.1 253773705 8158079 2440545..2441510 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sbc:SbBS512_E1529 peptide ABC transporter permease protein SapB; binding-protein-dependent transporters inner membrane component 2441510 8158079 ECBD_2324 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036536.1 2440545 D 866768 CDS YP_003036537.1 253773706 8158080 2441497..2442387 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sbc:SbBS512_E1528 peptide ABC transporter permease protein SapC; binding-protein-dependent transporters inner membrane component 2442387 8158080 ECBD_2325 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036537.1 2441497 D 866768 CDS YP_003036538.1 253773707 8158081 2442387..2443379 1 NC_012947.1 KEGG: sbc:SbBS512_E1527 peptide ABC transporter ATP-binding protein SapD; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; peptide ABC transporter ATPase 2443379 8158081 ECBD_2326 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide ABC transporter ATPase YP_003036538.1 2442387 D 866768 CDS YP_003036539.1 253773708 8158082 2443381..2444187 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sbc:SbBS512_E1526 peptide ABC transporter ATP-binding protein SapF; ABC transporter 2444187 8158082 ECBD_2327 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003036539.1 2443381 D 866768 CDS YP_003036540.1 253773709 8158083 2444255..2444608 1 NC_012947.1 PFAM: protein of unknown function DUF559; KEGG: sbo:SBO_1773 hypothetical protein; hypothetical protein 2444608 8158083 ECBD_2328 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036540.1 2444255 D 866768 CDS YP_003036541.1 253773710 8158084 2444976..2445764 1 NC_012947.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 2445764 8158084 ECBD_2329 Escherichia coli 'BL21-Gold(DE3)pLysS AG' enoyl-(acyl carrier protein) reductase YP_003036541.1 2444976 D 866768 CDS YP_003036542.1 253773711 8158085 2445908..2447035 1 NC_012947.1 KEGG: sbc:SbBS512_E1521 hypothetical protein; hypothetical protein 2447035 8158085 ECBD_2330 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036542.1 2445908 D 866768 CDS YP_003036543.1 253773712 8158086 2447103..2449037 1 NC_012947.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 2449037 8158086 ECBD_2331 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exoribonuclease II YP_003036543.1 2447103 D 866768 CDS YP_003036544.1 253773713 8158087 complement(2449114..2449218) 1 NC_012947.1 hypothetical protein 2449218 8158087 ECBD_2332 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036544.1 2449114 R 866768 CDS YP_003036545.1 253773714 8158088 2449272..2451257 1 NC_012947.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 2451257 8158088 ECBD_2333 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNase II stability modulator YP_003036545.1 2449272 D 866768 CDS YP_003036546.1 253773715 8158089 2451404..2451577 1 NC_012947.1 KEGG: sdy:SDY_1362 hypothetical protein; hypothetical protein 2451577 8158089 ECBD_2334 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036546.1 2451404 D 866768 CDS YP_003036547.1 253773716 8158090 2451667..2452416 1 NC_012947.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: ssn:SSON_1856 DeoR-type transcriptional regulator; DeoR family transcriptional regulator 2452416 8158090 ECBD_2335 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DeoR family transcriptional regulator YP_003036547.1 2451667 D 866768 CDS YP_003036548.1 253773717 8158091 2452685..2452903 1 NC_012947.1 KEGG: ssn:SSON_1857 lipoprotein; lipoprotein 2452903 8158091 ECBD_2336 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein YP_003036548.1 2452685 D 866768 CDS YP_003036549.1 253773718 8158092 complement(2453029..2453355) 1 NC_012947.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 2453355 8158092 ECBD_2337 Escherichia coli 'BL21-Gold(DE3)pLysS AG' translation initiation factor Sui1 YP_003036549.1 2453029 R 866768 CDS YP_003036550.1 253773719 8158093 complement(2453355..2454152) 1 NC_012947.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2454152 8158093 ECBD_2338 Escherichia coli 'BL21-Gold(DE3)pLysS AG' orotidine 5'-phosphate decarboxylase YP_003036550.1 2453355 R 866768 CDS YP_003036551.1 253773720 8158094 complement(2454285..2455454) 1 NC_012947.1 SMART: hypothetical protein; KEGG: ssn:SSON_1860 hypothetical protein; hypothetical protein 2455454 8158094 ECBD_2339 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036551.1 2454285 R 866768 CDS YP_003036552.1 253773721 8158095 complement(2455461..2455769) 1 NC_012947.1 PFAM: protein of unknown function DUF1049; KEGG: sfv:SFV_1292 hypothetical protein; hypothetical protein 2455769 8158095 ECBD_2340 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036552.1 2455461 R 866768 CDS YP_003036553.1 253773722 8158096 complement(2455918..2456682) 1 NC_012947.1 KEGG: sdy:SDY_1354 phosphatidylglycerophosphatase B; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; phosphatidylglycerophosphatase B 2456682 8158096 ECBD_2341 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphatidylglycerophosphatase B YP_003036553.1 2455918 R 866768 CDS YP_003036554.1 253773723 8158097 2456852..2457442 1 NC_012947.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 2457442 ribA 8158097 ribA Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTP cyclohydrolase II YP_003036554.1 2456852 D 866768 CDS YP_003036555.1 253773724 8158098 complement(2457506..2460181) 1 NC_012947.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2460181 8158098 ECBD_2343 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aconitate hydratase YP_003036555.1 2457506 R 866768 CDS YP_003036556.1 253773725 8158099 2460355..2460480 1 NC_012947.1 hypothetical protein 2460480 8158099 ECBD_2344 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036556.1 2460355 D 866768 CDS YP_003036557.1 253773726 8158100 complement(2460554..2460721) 1 NC_012947.1 KEGG: sbc:SbBS512_E1503 hypothetical protein; hypothetical protein 2460721 8158100 ECBD_2345 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036557.1 2460554 R 866768 CDS YP_003036558.1 253773727 8158101 complement(2460724..2460852) 1 NC_012947.1 KEGG: sdy:SDY_1348 hypothetical protein; hypothetical protein 2460852 8158101 ECBD_2346 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036558.1 2460724 R 866768 CDS YP_003036559.1 253773728 8158102 complement(2461183..2462157) 1 NC_012947.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2462157 cysB 8158102 cysB Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator CysB YP_003036559.1 2461183 R 866768 CDS YP_003036560.1 253773729 8158103 complement(2462367..2464964) 1 NC_012947.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2464964 8158103 ECBD_2348 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA topoisomerase I YP_003036560.1 2462367 R 866768 CDS YP_003036561.1 253773730 8158104 2465344..2465595 1 NC_012947.1 KEGG: hypothetical protein; hypothetical protein 2465595 8158104 ECBD_2349 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036561.1 2465344 D 866768 CDS YP_003036562.1 253773731 8158105 complement(2465631..2466680) 1 NC_012947.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 2466680 8158105 ECBD_2350 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic protease YP_003036562.1 2465631 R 866768 CDS YP_003036563.1 253773732 8158106 2466900..2467658 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ssn:SSON_1872 short chain dehydrogenase; short chain dehydrogenase 2467658 8158106 ECBD_2351 Escherichia coli 'BL21-Gold(DE3)pLysS AG' short chain dehydrogenase YP_003036563.1 2466900 D 866768 CDS YP_003036564.1 253773733 8158107 2467655..2468245 1 NC_012947.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 2468245 8158107 ECBD_2352 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cob(I)yrinic acid a,c-diamide adenosyltransferase YP_003036564.1 2467655 D 866768 CDS YP_003036565.1 253773734 8158108 complement(2468285..2469160) 1 NC_012947.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 2469160 8158108 ECBD_2353 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA pseudouridylate synthase B YP_003036565.1 2468285 R 866768 CDS YP_003036566.1 253773735 8158110 complement(2470911..2471414) 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 2471414 8158110 ECBD_2355 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003036566.1 2470911 R 866768 CDS YP_003036567.1 253773736 8158111 complement(2472075..2472695) 1 NC_012947.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sbc:SbBS512_E1491 SUA5/YciO/YrdC/YwlC family protein; hypothetical protein 2472695 8158111 ECBD_2356 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036567.1 2472075 R 866768 CDS YP_003036568.1 253773737 8158112 complement(2472692..2473573) 1 NC_012947.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: elf:LF82_2314 protein TrpH; PHP domain protein 2473573 8158112 ECBD_2357 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PHP domain protein YP_003036568.1 2472692 R 866768 CDS YP_003036569.1 253773738 8158113 2473847..2475409 1 NC_012947.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2475409 8158113 ECBD_2358 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anthranilate synthase component I YP_003036569.1 2473847 D 866768 CDS YP_003036570.1 253773739 8158114 2475409..2477004 1 NC_012947.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 2477004 8158114 ECBD_2359 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_003036570.1 2475409 D 866768 CDS YP_003036571.1 253773740 8158115 2477008..2478366 1 NC_012947.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2478366 8158115 ECBD_2360 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_003036571.1 2477008 D 866768 CDS YP_003036572.1 253773741 8158116 2478378..2479571 1 NC_012947.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2479571 8158116 ECBD_2361 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tryptophan synthase subunit beta YP_003036572.1 2478378 D 866768 CDS YP_003036573.1 253773742 8158117 2479571..2480377 1 NC_012947.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2480377 trpA 8158117 trpA Escherichia coli 'BL21-Gold(DE3)pLysS AG' tryptophan synthase subunit alpha YP_003036573.1 2479571 D 866768 CDS YP_003036574.1 253773743 8158118 2480758..2480937 1 NC_012947.1 KEGG: sfv:SFV_1273 hypothetical protein; hypothetical protein 2480937 8158118 ECBD_2363 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036574.1 2480758 D 866768 CDS YP_003036575.1 253773744 8158119 2481023..2481523 1 NC_012947.1 PFAM: protein of unknown function DUF892; KEGG: elf:LF82_2752 protein YciF; hypothetical protein 2481523 8158119 ECBD_2364 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036575.1 2481023 D 866768 CDS YP_003036576.1 253773745 8158120 2481569..2482075 1 NC_012947.1 PFAM: protein of unknown function DUF892; hypothetical protein 2482075 8158120 ECBD_2365 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036576.1 2481569 D 866768 CDS YP_003036577.1 253773746 8158121 complement(2482135..2482773) 1 NC_012947.1 receptor for colicin S4; outer membrane protein W 2482773 8158121 ECBD_2366 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane protein W YP_003036577.1 2482135 R 866768 CDS YP_003036578.1 253773747 8158122 2483130..2483873 1 NC_012947.1 PFAM: protein of unknown function UPF0259; KEGG: ssn:SSON_1911 hypothetical protein; hypothetical protein 2483873 8158122 ECBD_2367 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036578.1 2483130 D 866768 CDS YP_003036579.1 253773748 8158123 2483903..2484442 1 NC_012947.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2484442 8158123 ECBD_2368 Escherichia coli 'BL21-Gold(DE3)pLysS AG' intracellular septation protein A YP_003036579.1 2483903 D 866768 CDS YP_003036580.1 253773749 8158124 2484547..2484945 1 NC_012947.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 2484945 8158124 ECBD_2369 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyl-CoA thioester hydrolase YP_003036580.1 2484547 D 866768 CDS YP_003036581.1 253773750 8158125 complement(2484985..2485719) 1 NC_012947.1 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transporter TonB 2485719 8158125 ECBD_2370 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter TonB YP_003036581.1 2484985 R 866768 CDS YP_003036582.1 253773751 8158126 2485928..2486224 1 NC_012947.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 2486224 8158126 ECBD_2371 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YciI-like protein YP_003036582.1 2485928 D 866768 CDS YP_003036583.1 253773752 8158127 2486524..2487777 1 NC_012947.1 PFAM: TrkA-N domain protein; ion transport 2 domain protein; KEGG: elf:LF82_1141 potassium channel protein; voltage-gated potassium channel 2487777 8158127 ECBD_2372 Escherichia coli 'BL21-Gold(DE3)pLysS AG' voltage-gated potassium channel YP_003036583.1 2486524 D 866768 CDS YP_003036584.1 253773753 8158128 2488148..2489608 1 NC_012947.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2489608 cls 8158128 cls Escherichia coli 'BL21-Gold(DE3)pLysS AG' cardiolipin synthetase YP_003036584.1 2488148 D 866768 CDS YP_003036585.1 253773754 8158129 2489643..2489972 1 NC_012947.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 2489972 8158129 ECBD_2374 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dsDNA-mimic protein YP_003036585.1 2489643 D 866768 CDS YP_003036586.1 253773755 8158130 complement(2490025..2491029) 1 NC_012947.1 KEGG: sfv:SFV_1259 ATP-binding protein of oligopeptide ABC transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; peptide ABC transporter ATPase 2491029 8158130 ECBD_2375 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide ABC transporter ATPase YP_003036586.1 2490025 R 866768 CDS YP_003036587.1 253773756 8158131 complement(2491026..2492039) 1 NC_012947.1 KEGG: sbc:SbBS512_E1415 oligopeptide ABC transporter ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide transporter ATP-binding component 2492039 oppD 8158131 oppD Escherichia coli 'BL21-Gold(DE3)pLysS AG' oligopeptide transporter ATP-binding component YP_003036587.1 2491026 R 866768 CDS YP_003036588.1 253773757 8158132 complement(2492051..2492959) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ssn:SSON_1935 oligopeptide transport permease protein-like protein; binding-protein-dependent transporters inner membrane component 2492959 8158132 ECBD_2377 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036588.1 2492051 R 866768 CDS YP_003036589.1 253773758 8158133 complement(2492974..2493894) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sbo:SBO_1823 oligopeptide transporter permease; oligopeptide transporter permease 2493894 oppB 8158133 oppB Escherichia coli 'BL21-Gold(DE3)pLysS AG' oligopeptide transporter permease YP_003036589.1 2492974 R 866768 CDS YP_003036590.1 253773759 8158134 complement(2493980..2495656) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbo:SBO_1824 oligopeptide transport periplasmic binding protein; extracellular solute-binding protein family 5 2495656 8158134 ECBD_2379 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 5 YP_003036590.1 2493980 R 866768 CDS YP_003036591.1 253773760 8158135 2495895..2496191 1 NC_012947.1 KEGG: elf:LF82_p209 hypothetical protein; hypothetical protein 2496191 8158135 ECBD_2380 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036591.1 2495895 D 866768 CDS YP_003036592.1 253773761 8158136 complement(2496167..2496322) 1 NC_012947.1 hypothetical protein 2496322 8158136 ECBD_2381 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036592.1 2496167 R 866768 CDS YP_003036593.1 253773762 8158137 complement(2496349..2496996) 1 NC_012947.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ssn:SSON_1938 hypothetical protein; hypothetical protein 2496996 8158137 ECBD_2382 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036593.1 2496349 R 866768 CDS YP_003036594.1 253773763 8158138 2497473..2500148 1 NC_012947.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: ssn:SSON_1939 CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2500148 8158138 ECBD_2383 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_003036594.1 2497473 D 866768 CDS YP_003036595.1 253773764 8158139 complement(2500450..2501067) 1 NC_012947.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2501067 8158139 ECBD_2384 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thymidine kinase YP_003036595.1 2500450 R 866768 CDS YP_003036596.1 253773765 8158140 2501671..2502084 1 NC_012947.1 PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: ssn:SSON_1942 global DNA-binding transcriptional dual regulator H-NS; global DNA-binding transcriptional dual regulator H-NS 2502084 8158140 ECBD_2385 Escherichia coli 'BL21-Gold(DE3)pLysS AG' global DNA-binding transcriptional dual regulator H-NS YP_003036596.1 2501671 D 866768 CDS YP_003036597.1 253773766 8158141 complement(2502228..2503136) 1 NC_012947.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 2503136 8158141 ECBD_2386 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UTP--glucose-1-phosphate uridylyltransferase subunit GalU YP_003036597.1 2502228 R 866768 CDS YP_003036598.1 253773767 8158142 complement(2503338..2504351) 1 NC_012947.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sdy:SDY_1287 response regulator of RpoS; response regulator of RpoS 2504351 8158142 ECBD_2387 Escherichia coli 'BL21-Gold(DE3)pLysS AG' response regulator of RpoS YP_003036598.1 2503338 R 866768 CDS YP_003036599.1 253773768 8158143 complement(2504443..2505387) 1 NC_012947.1 PFAM: patatin; KEGG: ssn:SSON_1945 hypothetical protein; hypothetical protein 2505387 8158143 ECBD_2388 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036599.1 2504443 R 866768 CDS YP_003036600.1 253773769 8158144 2505461..2505919 1 NC_012947.1 PFAM: SEC-C motif domain protein; KEGG: sbc:SbBS512_E1398 sec-C motif domain protein; hypothetical protein 2505919 8158144 ECBD_2389 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036600.1 2505461 D 866768 CDS YP_003036601.1 253773770 8158145 2505969..2506811 1 NC_012947.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 2506811 purU 8158145 purU Escherichia coli 'BL21-Gold(DE3)pLysS AG' formyltetrahydrofolate deformylase YP_003036601.1 2505969 D 866768 CDS YP_003036602.1 253773771 8158148 complement(2507711..2508388) 1 NC_012947.1 KEGG: sbc:SbBS512_E1395 respiratory nitrate reductase 1, subunit gamma; TIGRFAM: respiratory nitrate reductase, subunit gamma; PFAM: nitrate reductase subunit gamma; respiratory nitrate reductase, subunit gamma 2508388 8158148 ECBD_2391 Escherichia coli 'BL21-Gold(DE3)pLysS AG' respiratory nitrate reductase, subunit gamma YP_003036602.1 2507711 R 866768 CDS YP_003036603.1 253773772 8158149 complement(2508388..2509098) 1 NC_012947.1 KEGG: sbc:SbBS512_E1394 nitrate reductase molybdenum cofactor assembly chaperone 1; TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: nitrate reductase subunit delta; nitrate reductase molybdenum cofactor assembly chaperone 2509098 8158149 ECBD_2392 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate reductase molybdenum cofactor assembly chaperone YP_003036603.1 2508388 R 866768 CDS YP_003036604.1 253773773 8158150 complement(2509095..2510633) 1 NC_012947.1 TIGRFAM: nitrate reductase subunit beta; KEGG: sbo:SBO_1841 nitrate reductase 1 subunit beta; nitrate reductase subunit beta 2510633 8158150 ECBD_2393 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate reductase subunit beta YP_003036604.1 2509095 R 866768 CDS YP_003036605.1 253773774 8158151 complement(2510630..2514373) 1 NC_012947.1 TIGRFAM: nitrate reductase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfv:SFV_1240 nitrate reductase 1, subunit alpha; nitrate reductase, subunit alpha 2514373 8158151 ECBD_2394 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate reductase, subunit alpha YP_003036605.1 2510630 R 866768 CDS YP_003036606.1 253773775 8158152 complement(2514889..2516280) 1 NC_012947.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1391 nitrite extrusion protein 1; nitrite transporter 2516280 8158152 ECBD_2395 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrite transporter YP_003036606.1 2514889 R 866768 CDS YP_003036607.1 253773776 8158153 complement(2516375..2516593) 1 NC_012947.1 KEGG: ssn:SSON_1954 hypothetical protein; hypothetical protein 2516593 8158153 ECBD_2396 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036607.1 2516375 R 866768 CDS YP_003036608.1 253773777 8158154 2516619..2518415 1 NC_012947.1 KEGG: sfv:SFV_1238 nitrate/nitrite sensor protein NarX; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; nitrate/nitrite sensor protein NarX 2518415 8158154 ECBD_2397 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrate/nitrite sensor protein NarX YP_003036608.1 2516619 D 866768 CDS YP_003036609.1 253773778 8160209 2518408..2519058 1 NC_012947.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 2519058 8160209 ECBD_2398 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator NarL YP_003036609.1 2518408 D 866768 CDS YP_003036610.1 253773779 8160292 complement(2519059..2520489) 1 NC_012947.1 KEGG: elf:LF82_2746 uncharacterized protein YchO; hypothetical protein 2520489 8160292 ECBD_2399 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036610.1 2519059 R 866768 CDS YP_003036611.1 253773780 8160293 2520639..2520992 1 NC_012947.1 PFAM: DsrE family protein; KEGG: sdy:SDY_1271 hypothetical protein; DsrE family protein 2520992 8160293 ECBD_2400 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DsrE family protein YP_003036611.1 2520639 D 866768 CDS YP_003036612.1 253773781 8160294 complement(2521036..2521731) 1 NC_012947.1 PFAM: cation transport protein ChaC; KEGG: sbc:SbBS512_E1385 ChaC protein; cation transport protein ChaC 2521731 8160294 ECBD_2401 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cation transport protein ChaC YP_003036612.1 2521036 R 866768 CDS YP_003036613.1 253773782 8160295 complement(2521889..2522119) 1 NC_012947.1 in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 2522119 chaB 8160295 chaB Escherichia coli 'BL21-Gold(DE3)pLysS AG' cation transport regulator YP_003036613.1 2521889 R 866768 CDS YP_003036614.1 253773783 8160296 2522389..2523489 1 NC_012947.1 TIGRFAM: calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; KEGG: ssn:SSON_1961 calcium/sodium:proton antiporter; calcium/sodium:proton antiporter 2523489 8160296 ECBD_2403 Escherichia coli 'BL21-Gold(DE3)pLysS AG' calcium/sodium:proton antiporter YP_003036614.1 2522389 D 866768 CDS YP_003036615.1 253773784 8160297 2524429..2524536 1 NC_012947.1 KEGG: ssn:SSON_1962 hypothetical protein; hypothetical protein 2524536 8160297 ECBD_2404 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036615.1 2524429 D 866768 CDS YP_003036616.1 253773785 8160298 2524937..2525071 1 NC_012947.1 KEGG: sbo:SBO_1851 hypothetical protein; hypothetical protein 2525071 8160298 ECBD_2405 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036616.1 2524937 D 866768 CDS YP_003036617.1 253773786 8160299 complement(2525218..2526072) 1 NC_012947.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2526072 8160299 ECBD_2406 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-dehydro-3-deoxyphosphooctonate aldolase YP_003036617.1 2525218 R 866768 CDS YP_003036618.1 253773787 8160300 complement(2526108..2526917) 1 NC_012947.1 KEGG: sbc:SbBS512_E1378 sirB1 protein; transcriptional regulator 2526917 8160300 ECBD_2407 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator YP_003036618.1 2526108 R 866768 CDS YP_003036619.1 253773788 8160301 complement(2526921..2527313) 1 NC_012947.1 PFAM: invasion gene expression up-regulator SirB; KEGG: ssn:SSON_1965 transcriptional regulator; transcriptional regulator 2527313 8160301 ECBD_2408 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator YP_003036619.1 2526921 R 866768 CDS YP_003036620.1 253773789 8160302 complement(2527310..2528143) 1 NC_012947.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2528143 8160302 ECBD_2409 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_003036620.1 2527310 R 866768 CDS YP_003036621.1 253773790 8160303 complement(2528143..2529225) 1 NC_012947.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2529225 prfA 8160303 prfA Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide chain release factor 1 YP_003036621.1 2528143 R 866768 CDS YP_003036622.1 253773791 8160304 complement(2529267..2530523) 1 NC_012947.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 2530523 hemA 8160304 hemA Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamyl-tRNA reductase YP_003036622.1 2529267 R 866768 CDS YP_003036623.1 253773792 8160305 2530737..2531360 1 NC_012947.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 2531360 lolB 8160305 lolB Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein LolB YP_003036623.1 2530737 D 866768 CDS YP_003036624.1 253773793 8160306 2531360..2532211 1 NC_012947.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2532211 ipk 8160306 ipk Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_003036624.1 2531360 D 866768 CDS YP_003036625.1 253773794 8160307 2532296..2533309 1 NC_012947.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 2533309 8160307 ECBD_2414 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribose-phosphate pyrophosphokinase YP_003036625.1 2532296 D 866768 CDS YP_003036626.1 253773795 8160308 2533461..2535113 1 NC_012947.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 2535113 8160308 ECBD_2415 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfate transporter YchM YP_003036626.1 2533461 D 866768 CDS YP_003036627.1 253773796 8160309 complement(2535168..2535446) 1 NC_012947.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein 2535446 8160309 ECBD_2416 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036627.1 2535168 R 866768 CDS YP_003036628.1 253773797 8160310 2535724..2536308 1 NC_012947.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 2536308 8160310 ECBD_2417 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidyl-tRNA hydrolase YP_003036628.1 2535724 D 866768 CDS YP_003036629.1 253773798 8160311 2536425..2537516 1 NC_012947.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2537516 8160311 ECBD_2418 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTP-dependent nucleic acid-binding protein EngD YP_003036629.1 2536425 D 866768 CDS YP_003036630.1 253773799 8160312 complement(2537761..2537940) 1 NC_012947.1 KEGG: sbc:SbBS512_E1366 hypothetical protein; hypothetical protein 2537940 8160312 ECBD_2419 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036630.1 2537761 R 866768 CDS YP_003036631.1 253773800 8160313 2538285..2541152 1 NC_012947.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sfx:S1289 adhesion and penetration protein; outer membrane autotransporter barrel domain protein 2541152 8160313 ECBD_2420 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane autotransporter barrel domain protein YP_003036631.1 2538285 D 866768 CDS YP_003036632.1 253773801 8160314 complement(2541252..2543171) 1 NC_012947.1 Positively regulates the dhaKLM operon from a sigma-70 promoter; DNA-binding transcriptional regulator DhaR 2543171 8160314 ECBD_2421 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator DhaR YP_003036632.1 2541252 R 866768 CDS YP_003036633.1 253773802 8160315 2543399..2544469 1 NC_012947.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 2544469 8160315 ECBD_2422 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydroxyacetone kinase subunit DhaK YP_003036633.1 2543399 D 866768 CDS YP_003036634.1 253773803 8160316 2544480..2545112 1 NC_012947.1 with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone; dihydroxyacetone kinase subunit DhaL 2545112 8160316 ECBD_2423 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydroxyacetone kinase subunit DhaL YP_003036634.1 2544480 D 866768 CDS YP_003036635.1 253773804 8160317 2545123..2546541 1 NC_012947.1 phosphotransferaese subunit; phosphorylates dihydroxyacetone along with DhaK/DhaL; dihydroxyacetone kinase subunit M 2546541 8160317 ECBD_2424 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydroxyacetone kinase subunit M YP_003036635.1 2545123 D 866768 CDS YP_003036636.1 253773805 8160318 2546861..2548558 1 NC_012947.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 2548558 treA 8160318 treA Escherichia coli 'BL21-Gold(DE3)pLysS AG' trehalase YP_003036636.1 2546861 D 866768 CDS YP_003036637.1 253773806 8160319 complement(2548637..2549077) 1 NC_012947.1 KEGG: sbc:SbBS512_E1354 hypothetical protein; hypothetical protein 2549077 8160319 ECBD_2426 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036637.1 2548637 R 866768 CDS YP_003036638.1 253773807 8160320 complement(2549255..2549509) 1 NC_012947.1 PFAM: transglycosylase; KEGG: sdy:SDY_1234 hypothetical protein; transglycosylase 2549509 8160320 ECBD_2427 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transglycosylase YP_003036638.1 2549255 R 866768 CDS YP_003036639.1 253773808 8160321 2549710..2550444 1 NC_012947.1 PFAM: YcgR family protein; type IV pilus assembly PilZ; KEGG: ssn:SSON_1186 hypothetical protein; YcgR family protein 2550444 8160321 ECBD_2428 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YcgR family protein YP_003036639.1 2549710 D 866768 CDS YP_003036640.1 253773809 8160322 complement(2550446..2551057) 1 NC_012947.1 PFAM: lytic transglycosylase catalytic; KEGG: ssn:SSON_1184 murein transglycosylase E; lytic transglycosylase catalytic 2551057 8160322 ECBD_2429 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lytic transglycosylase catalytic YP_003036640.1 2550446 R 866768 CDS YP_003036641.1 253773810 8160323 2551157..2552071 1 NC_012947.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 2552071 ldcA 8160323 ldcA Escherichia coli 'BL21-Gold(DE3)pLysS AG' L,D-carboxypeptidase A YP_003036641.1 2551157 D 866768 CDS YP_003036642.1 253773811 8160324 2552166..2553902 1 NC_012947.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 2553902 8160324 ECBD_2431 Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium/proton antiporter YP_003036642.1 2552166 D 866768 CDS YP_003036643.1 253773812 8160325 complement(2554288..2555358) 1 NC_012947.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 2555358 dadX 8160325 dadX Escherichia coli 'BL21-Gold(DE3)pLysS AG' alanine racemase YP_003036643.1 2554288 R 866768 CDS YP_003036644.1 253773813 8160326 complement(2555368..2556666) 1 NC_012947.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 2556666 8160326 ECBD_2433 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-amino acid dehydrogenase small subunit YP_003036644.1 2555368 R 866768 CDS YP_003036645.1 253773814 8160327 2556996..2558528 1 NC_012947.1 PFAM: SpoVR family protein; SpoVR family protein 2558528 8160327 ECBD_2434 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SpoVR family protein YP_003036645.1 2556996 D 866768 CDS YP_003036646.1 253773815 8160328 complement(2558580..2559299) 1 NC_012947.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2559299 8160328 ECBD_2435 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fatty acid metabolism regulator YP_003036646.1 2558580 R 866768 CDS YP_003036647.1 253773816 8160329 2559520..2561061 1 NC_012947.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2561061 nhaB 8160329 nhaB Escherichia coli 'BL21-Gold(DE3)pLysS AG' sodium/proton antiporter YP_003036647.1 2559520 D 866768 CDS YP_003036648.1 253773817 8160330 2561207..2561737 1 NC_012947.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2561737 8160330 ECBD_2437 Escherichia coli 'BL21-Gold(DE3)pLysS AG' disulfide bond formation protein B YP_003036648.1 2561207 D 866768 CDS YP_003036649.1 253773818 8160331 complement(2561783..2563051) 1 NC_012947.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 2563051 umuC 8160331 umuC Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase V subunit UmuC YP_003036649.1 2561783 R 866768 CDS YP_003036650.1 253773819 8160332 complement(2563051..2563470) 1 NC_012947.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD 2563470 8160332 ECBD_2439 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase V subunit UmuD YP_003036650.1 2563051 R 866768 CDS YP_003036651.1 253773820 8160334 complement(2564950..2565396) 1 NC_012947.1 PFAM: protein of unknown function UPF0153; KEGG: sfv:SFV_1188 hypothetical protein; hypothetical protein 2565396 8160334 ECBD_2441 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036651.1 2564950 R 866768 CDS YP_003036652.1 253773821 8160335 complement(2565488..2566147) 1 NC_012947.1 PFAM: fumarylacetoacetate hydrolase; KEGG: sbc:SbBS512_E1335 fumarylacetoacetate hydrolase family protein; hypothetical protein 2566147 8160335 ECBD_2442 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036652.1 2565488 R 866768 CDS YP_003036653.1 253773822 8160336 complement(2566219..2566512) 1 NC_012947.1 PFAM: protein of unknown function DUF709; KEGG: ssn:SSON_1168 hypothetical protein; hypothetical protein 2566512 8160336 ECBD_2443 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036653.1 2566219 R 866768 CDS YP_003036654.1 253773823 8160337 2566754..2567155 1 NC_012947.1 PFAM: peptidase domain protein; KEGG: elf:LF82_2732 uncharacterized protein YcgK; peptidase domain protein 2567155 8160337 ECBD_2444 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase domain protein YP_003036654.1 2566754 D 866768 CDS YP_003036655.1 253773824 8160338 complement(2567258..2567626) 1 NC_012947.1 PFAM: Fels-1 Propage domain protein; Fels-1 Propage domain protein 2567626 8160338 ECBD_2445 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Fels-1 Propage domain protein YP_003036655.1 2567258 R 866768 CDS YP_003036656.1 253773825 8160339 2568146..2568841 1 NC_012947.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2568841 minC 8160339 minC Escherichia coli 'BL21-Gold(DE3)pLysS AG' septum formation inhibitor YP_003036656.1 2568146 D 866768 CDS YP_003036657.1 253773826 8160340 2568865..2569677 1 NC_012947.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 2569677 8160340 ECBD_2447 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division inhibitor MinD YP_003036657.1 2568865 D 866768 CDS YP_003036658.1 253773827 8160341 2569681..2569947 1 NC_012947.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2569947 minE 8160341 minE Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division topological specificity factor MinE YP_003036658.1 2569681 D 866768 CDS YP_003036659.1 253773828 8160343 2571298..2571582 1 NC_012947.1 KEGG: sfl:SF1159 hypothetical protein; hypothetical protein 2571582 8160343 ECBD_2450 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036659.1 2571298 D 866768 CDS YP_003036660.1 253773829 8160344 2571592..2571921 1 NC_012947.1 KEGG: ssn:SSON_1161 hypothetical protein; hypothetical protein 2571921 8160344 ECBD_2451 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036660.1 2571592 D 866768 CDS YP_003036661.1 253773830 8160346 complement(2575025..2575243) 1 NC_012947.1 KEGG: elf:LF82_3545 uncharacterized protein YmgF; hypothetical protein 2575243 8160346 ECBD_2453 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036661.1 2575025 R 866768 CDS YP_003036662.1 253773831 8160347 complement(2575375..2576940) 1 NC_012947.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: sfx:S1241 hypothetical protein; diguanylate phosphodiesterase 2576940 8160347 ECBD_2454 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate phosphodiesterase YP_003036662.1 2575375 R 866768 CDS YP_003036663.1 253773832 8160348 complement(2577230..2577478) 1 NC_012947.1 KEGG: elf:LF82_3542 uncharacterized protein YmgC; hypothetical protein 2577478 8160348 ECBD_2455 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036663.1 2577230 R 866768 CDS YP_003036664.1 253773833 8160349 complement(2577591..2577857) 1 NC_012947.1 hypothetical protein 2577857 8160349 ECBD_2456 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036664.1 2577591 R 866768 CDS YP_003036665.1 253773834 8160350 complement(2577886..2578158) 1 NC_012947.1 KEGG: elf:LF82_3540 hypothetical protein; hypothetical protein 2578158 8160350 ECBD_2457 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036665.1 2577886 R 866768 CDS YP_003036666.1 253773835 8160351 complement(2578201..2578437) 1 NC_012947.1 hypothetical protein 2578437 8160351 ECBD_2458 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036666.1 2578201 R 866768 CDS YP_003036667.1 253773836 8160352 2578751..2579962 1 NC_012947.1 PFAM: EAL domain protein; BLUF domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 2579962 8160352 ECBD_2459 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate phosphodiesterase YP_003036667.1 2578751 D 866768 CDS YP_003036668.1 253773837 8160353 2580167..2580898 1 NC_012947.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sbc:SbBS512_E1317 transcriptional regulator MlrA; MerR family transcriptional regulator 2580898 8160353 ECBD_2460 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MerR family transcriptional regulator YP_003036668.1 2580167 D 866768 CDS YP_003036669.1 253773838 8160354 2581119..2581523 1 NC_012947.1 PFAM: protein of unknown function DUF1398; hypothetical protein 2581523 8160354 ECBD_2461 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036669.1 2581119 D 866768 CDS YP_003036670.1 253773839 8160355 2582219..2582542 1 NC_012947.1 KEGG: sdy:SDY_2015 hypothetical protein; hypothetical protein 2582542 8160355 ECBD_2462 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036670.1 2582219 D 866768 CDS YP_003036671.1 253773840 8160356 complement(2582645..2583895) 1 NC_012947.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2583895 8160356 ECBD_2463 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isocitrate dehydrogenase YP_003036671.1 2582645 R 866768 CDS YP_003036672.1 253773841 8160357 2584067..2584720 1 NC_012947.1 catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase E 2584720 8160357 ECBD_2464 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA pseudouridine synthase E YP_003036672.1 2584067 D 866768 CDS YP_003036673.1 253773842 8160358 2584730..2585191 1 NC_012947.1 PFAM: NUDIX hydrolase; KEGG: sfv:SFV_1169 phosphohydrolase; NUDIX hydrolase 2585191 8160358 ECBD_2465 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NUDIX hydrolase YP_003036673.1 2584730 D 866768 CDS YP_003036674.1 253773843 8160359 2585245..2586351 1 NC_012947.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2586351 mnmA 8160359 mnmA Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA-specific 2-thiouridylase MnmA YP_003036674.1 2585245 D 866768 CDS YP_003036675.1 253773844 8160360 2586387..2587028 1 NC_012947.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2587028 8160360 ECBD_2467 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036675.1 2586387 D 866768 CDS YP_003036676.1 253773845 8160361 2587032..2588402 1 NC_012947.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2588402 8160361 ECBD_2468 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenylosuccinate lyase YP_003036676.1 2587032 D 866768 CDS YP_003036677.1 253773846 8160362 2588570..2589241 1 NC_012947.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 2589241 8160362 ECBD_2469 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator PhoP YP_003036677.1 2588570 D 866768 CDS YP_003036678.1 253773847 8160363 2589241..2590701 1 NC_012947.1 PFAM: PhoQ Sensor domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sdy:SDY_2023 sensor protein PhoQ; sensor protein PhoQ 2590701 8160363 ECBD_2470 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensor protein PhoQ YP_003036678.1 2589241 D 866768 CDS YP_003036679.1 253773848 8160364 2590777..2591898 1 NC_012947.1 PFAM: cupin; SMART: transcription factor jumonji jmjC domain protein; KEGG: sbc:SbBS512_E1306 cupin family protein; cupin 2591898 8160364 ECBD_2471 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cupin YP_003036679.1 2590777 D 866768 CDS YP_003036680.1 253773849 8160365 complement(2591947..2593173) 1 NC_012947.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 2593173 8160365 ECBD_2472 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase T YP_003036680.1 2591947 R 866768 CDS YP_003036681.1 253773850 8160366 2593423..2594559 1 NC_012947.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase protein 2594559 potA 8160366 potA Escherichia coli 'BL21-Gold(DE3)pLysS AG' putrescine/spermidine ABC transporter ATPase protein YP_003036681.1 2593423 D 866768 CDS YP_003036682.1 253773851 8160367 2594543..2595400 1 NC_012947.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 2595400 potB 8160367 potB Escherichia coli 'BL21-Gold(DE3)pLysS AG' spermidine/putrescine ABC transporter membrane protein YP_003036682.1 2594543 D 866768 CDS YP_003036683.1 253773852 8160368 2595397..2596191 1 NC_012947.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 2596191 potC 8160368 potC Escherichia coli 'BL21-Gold(DE3)pLysS AG' spermidine/putrescine ABC transporter membrane protein YP_003036683.1 2595397 D 866768 CDS YP_003036684.1 253773853 8160369 2596188..2597234 1 NC_012947.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein 2597234 potD 8160369 potD Escherichia coli 'BL21-Gold(DE3)pLysS AG' spermidine/putrescine ABC transporter substrate-binding protein YP_003036684.1 2596188 D 866768 CDS YP_003036685.1 253773854 8160370 2597292..2597699 1 NC_012947.1 KEGG: efe:EFER_1286 conserved hypothetical protein; inner membrane protein; hypothetical proten 2597699 8160370 ECBD_2477 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical proten YP_003036685.1 2597292 D 866768 CDS YP_003036686.1 253773855 8160371 2597749..2598537 1 NC_012947.1 KEGG: elf:LF82_2726 inner membrane protein YcfZ; inner membrane protein YcfZ 2598537 8160371 ECBD_2478 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane protein YcfZ YP_003036686.1 2597749 D 866768 CDS YP_003036687.1 253773856 8160372 complement(2598656..2599495) 1 NC_012947.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2599495 8160372 ECBD_2479 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD-dependent deacetylase YP_003036687.1 2598656 R 866768 CDS YP_003036688.1 253773857 8159887 complement(2600020..2600523) 1 NC_012947.1 PFAM: IS1 transposase; KEGG: hdu:HD1970 insertion element IS1 1/5/6 protein InsB; IS1 transposase 2600523 8159887 ECBD_2481 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003036688.1 2600020 R 866768 CDS YP_003036689.1 253773858 8159888 complement(2600442..2600717) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 2600717 8159888 ECBD_2482 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003036689.1 2600442 R 866768 CDS YP_003036690.1 253773859 8159889 complement(2601228..2602466) 1 NC_012947.1 part of the ATP-dependent transporter LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 2602466 8159889 ECBD_2483 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane-specific lipoprotein transporter subunit LolE YP_003036690.1 2601228 R 866768 CDS YP_003036691.1 253773860 8159890 complement(2602472..2603173) 1 NC_012947.1 outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 2603173 lolD 8159890 lolD Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein transporter ATP-binding subunit YP_003036691.1 2602472 R 866768 CDS YP_003036692.1 253773861 8159891 complement(2603166..2604365) 1 NC_012947.1 part of the ATP-dependent transporter LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 2604365 8159891 ECBD_2485 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane-specific lipoprotein transporter subunit LolC YP_003036692.1 2603166 R 866768 CDS YP_003036693.1 253773862 8159892 2604627..2605700 1 NC_012947.1 PFAM: acyltransferase 3; KEGG: ssn:SSON_1135 hypothetical protein; acyltransferase 3 2605700 8159892 ECBD_2486 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyltransferase 3 YP_003036693.1 2604627 D 866768 CDS YP_003036694.1 253773863 8159893 2605780..2609274 1 NC_012947.1 KEGG: sfv:SFV_1134 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; helicase; DEAD/DEAH box helicase; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase; transcription-repair coupling factor 2609274 8159893 ECBD_2487 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcription-repair coupling factor YP_003036694.1 2605780 D 866768 CDS YP_003036695.1 253773864 8159894 2609421..2610380 1 NC_012947.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: sdy:SDY_2037 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2610380 8159894 ECBD_2488 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ErfK/YbiS/YcfS/YnhG family protein YP_003036695.1 2609421 D 866768 CDS YP_003036696.1 253773865 8159895 complement(2610463..2610720) 1 NC_012947.1 PFAM: protein of unknown function DUF1471; KEGG: elf:LF82_0232 UPF0379 protein YcfR; hypothetical protein 2610720 8159895 ECBD_2489 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036696.1 2610463 R 866768 CDS YP_003036697.1 253773866 8159896 2610961..2611593 1 NC_012947.1 PFAM: regulatory protein TetR; KEGG: ssn:SSON_1131 hypothetical protein; TetR family transcriptional regulator 2611593 8159896 ECBD_2490 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TetR family transcriptional regulator YP_003036697.1 2610961 D 866768 CDS YP_003036698.1 253773867 8159897 complement(2611655..2612194) 1 NC_012947.1 PFAM: 17 kDa surface antigen; KEGG: ssn:SSON_1130 hypothetical protein; hypothetical protein 2612194 8159897 ECBD_2491 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036698.1 2611655 R 866768 CDS YP_003036699.1 253773868 8159898 complement(2612421..2613725) 1 NC_012947.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sfx:S1193 respiratory NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2613725 8159898 ECBD_2492 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003036699.1 2612421 R 866768 CDS YP_003036700.1 253773869 8159899 complement(2614133..2614675) 1 NC_012947.1 PFAM: protein of unknown function UPF0227; KEGG: sfx:S1192 hypothetical protein; hypothetical protein 2614675 8159899 ECBD_2493 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036700.1 2614133 R 866768 CDS YP_003036701.1 253773870 8159900 complement(2614698..2615723) 1 NC_012947.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2615723 8159900 ECBD_2494 Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-hexosaminidase YP_003036701.1 2614698 R 866768 CDS YP_003036702.1 253773871 8159901 complement(2615734..2616558) 1 NC_012947.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 2616558 thiK 8159901 thiK Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine kinase YP_003036702.1 2615734 R 866768 CDS YP_003036703.1 253773872 8159902 complement(2616539..2617180) 1 NC_012947.1 TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: sdy:SDY_2045 hypothetical protein; membrane lipoprotein lipid attachment site 2617180 8159902 ECBD_2496 Escherichia coli 'BL21-Gold(DE3)pLysS AG' membrane lipoprotein lipid attachment site YP_003036703.1 2616539 R 866768 CDS YP_003036704.1 253773873 8159903 complement(2617194..2617571) 1 NC_012947.1 PFAM: protein of unknown function DUF1425; KEGG: ssn:SSON_1124 hypothetical protein; hypothetical protein 2617571 8159903 ECBD_2497 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036704.1 2617194 R 866768 CDS YP_003036705.1 253773874 8159904 complement(2617574..2617933) 1 NC_012947.1 PFAM: histidine triad (HIT) protein; KEGG: ssn:SSON_1123 purine nucleoside phosphoramidase; purine nucleoside phosphoramidase 2617933 8159904 ECBD_2498 Escherichia coli 'BL21-Gold(DE3)pLysS AG' purine nucleoside phosphoramidase YP_003036705.1 2617574 R 866768 CDS YP_003036706.1 253773875 8159905 2618267..2620456 1 NC_012947.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdy:SDY_2048 ferric-rhodotorulic acid outer membrane transporter; ferric-rhodotorulic acid outer membrane transporter 2620456 8159905 ECBD_2499 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferric-rhodotorulic acid outer membrane transporter YP_003036706.1 2618267 D 866768 CDS YP_003036707.1 253773876 8159906 complement(2620516..2621949) 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 2621949 8159906 ECBD_2500 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system glucose-specific transporter subunits IIBC YP_003036707.1 2620516 R 866768 CDS YP_003036708.1 253773877 8159907 complement(2622244..2623041) 1 NC_012947.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sdy:SDY_2050 predicted metallodependent hydrolase; metallodependent hydrolase 2623041 8159907 ECBD_2501 Escherichia coli 'BL21-Gold(DE3)pLysS AG' metallodependent hydrolase YP_003036708.1 2622244 R 866768 CDS YP_003036709.1 253773878 8159908 complement(2623052..2624056) 1 NC_012947.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the subunit beta on the DNA; DNA polymerase III subunit delta' 2624056 8159908 ECBD_2502 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunit delta' YP_003036709.1 2623052 R 866768 CDS YP_003036710.1 253773879 8159909 complement(2624053..2624694) 1 NC_012947.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2624694 tmk 8159909 tmk Escherichia coli 'BL21-Gold(DE3)pLysS AG' thymidylate kinase YP_003036710.1 2624053 R 866768 CDS YP_003036711.1 253773880 8159910 complement(2624684..2625706) 1 NC_012947.1 PFAM: aminodeoxychorismate lyase; KEGG: sbc:SbBS512_E2227 hypothetical protein; hypothetical protein 2625706 8159910 ECBD_2504 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036711.1 2624684 R 866768 CDS YP_003036712.1 253773881 8159911 complement(2625709..2626518) 1 NC_012947.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 2626518 8159911 ECBD_2505 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-amino-4-deoxychorismate lyase YP_003036712.1 2625709 R 866768 CDS YP_003036713.1 253773882 8159912 complement(2626638..2627879) 1 NC_012947.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 2627879 8159912 ECBD_2506 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-oxoacyl-(acyl carrier protein) synthase II YP_003036713.1 2626638 R 866768 CDS YP_003036714.1 253773883 8159913 complement(2627967..2628203) 1 NC_012947.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2628203 acpP 8159913 acpP Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyl carrier protein YP_003036714.1 2627967 R 866768 CDS YP_003036715.1 253773884 8159914 complement(2628414..2629148) 1 NC_012947.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2629148 fabG 8159914 fabG Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-ketoacyl-ACP reductase YP_003036715.1 2628414 R 866768 CDS YP_003036716.1 253773885 8159915 complement(2629161..2630090) 1 NC_012947.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: sbc:SbBS512_E2232 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 2630090 8159915 ECBD_2509 Escherichia coli 'BL21-Gold(DE3)pLysS AG' malonyl CoA-acyl carrier protein transacylase YP_003036716.1 2629161 R 866768 CDS YP_003036717.1 253773886 8159916 complement(2630106..2631059) 1 NC_012947.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 2631059 8159916 ECBD_2510 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-oxoacyl-(acyl carrier protein) synthase III YP_003036717.1 2630106 R 866768 CDS YP_003036718.1 253773887 8159917 complement(2631127..2632167) 1 NC_012947.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2632167 8159917 ECBD_2511 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate acyltransferase PlsX YP_003036718.1 2631127 R 866768 CDS YP_003036719.1 253773888 8159918 complement(2632278..2632451) 1 NC_012947.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2632451 rpmF 8159918 rpmF Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L32 YP_003036719.1 2632278 R 866768 CDS YP_003036720.1 253773889 8159919 complement(2632503..2633024) 1 NC_012947.1 PFAM: protein of unknown function DUF177; KEGG: sdy:SDY_2062 hypothetical protein; hypothetical protein 2633024 8159919 ECBD_2513 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036720.1 2632503 R 866768 CDS YP_003036721.1 253773890 8159920 2633184..2633807 1 NC_012947.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2633807 8159920 ECBD_2514 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Maf-like protein YP_003036721.1 2633184 D 866768 CDS YP_003036722.1 253773891 8159921 complement(2633919..2634878) 1 NC_012947.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 2634878 8159921 ECBD_2515 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA pseudouridylate synthase C YP_003036722.1 2633919 R 866768 CDS YP_003036723.1 253773892 8159922 2635451..2638636 1 NC_012947.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E 2638636 rne 8159922 rne Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease E YP_003036723.1 2635451 D 866768 CDS YP_003036724.1 253773893 8159923 complement(2638832..2639785) 1 NC_012947.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 2639785 flgL 8159923 flgL Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar hook-associated protein FlgL YP_003036724.1 2638832 R 866768 CDS YP_003036725.1 253773894 8159924 complement(2639797..2641440) 1 NC_012947.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 2641440 flgK 8159924 flgK Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar hook-associated protein FlgK YP_003036725.1 2639797 R 866768 CDS YP_003036726.1 253773895 8159925 complement(2641506..2642447) 1 NC_012947.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 2642447 flgJ 8159925 flgJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar rod assembly protein/muramidase FlgJ YP_003036726.1 2641506 R 866768 CDS YP_003036727.1 253773896 8159926 complement(2642447..2643544) 1 NC_012947.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 2643544 flgI 8159926 flgI Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body P-ring protein YP_003036727.1 2642447 R 866768 CDS YP_003036728.1 253773897 8159927 complement(2643556..2644263) 1 NC_012947.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 2644263 flgH 8159927 flgH Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body L-ring protein YP_003036728.1 2643556 R 866768 CDS YP_003036729.1 253773898 8159928 complement(2644307..2645089) 1 NC_012947.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 2645089 flgG 8159928 flgG Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body rod protein FlgG YP_003036729.1 2644307 R 866768 CDS YP_003036730.1 253773899 8159929 complement(2645261..2646016) 1 NC_012947.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 2646016 flgF 8159929 flgF Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body rod protein FlgF YP_003036730.1 2645261 R 866768 CDS YP_003036731.1 253773900 8159930 complement(2646036..2647241) 1 NC_012947.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 2647241 flgE 8159930 flgE Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar hook protein FlgE YP_003036731.1 2646036 R 866768 CDS YP_003036732.1 253773901 8159931 complement(2647266..2647961) 1 NC_012947.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 2647961 flgD 8159931 flgD Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body rod modification protein YP_003036732.1 2647266 R 866768 CDS YP_003036733.1 253773902 8159932 complement(2647973..2648377) 1 NC_012947.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2648377 flgC 8159932 flgC Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body rod protein FlgC YP_003036733.1 2647973 R 866768 CDS YP_003036734.1 253773903 8159933 complement(2648381..2648797) 1 NC_012947.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 2648797 flgB 8159933 flgB Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body rod protein FlgB YP_003036734.1 2648381 R 866768 CDS YP_003036735.1 253773904 8159934 2648952..2649611 1 NC_012947.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 2649611 flgA 8159934 flgA Escherichia coli 'BL21-Gold(DE3)pLysS AG' flagellar basal body P-ring biosynthesis protein FlgA YP_003036735.1 2648952 D 866768 CDS YP_003036736.1 253773905 8159935 2649687..2649980 1 NC_012947.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma28 factor FlgM 2649980 8159935 ECBD_2529 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anti-sigma28 factor FlgM YP_003036736.1 2649687 D 866768 CDS YP_003036737.1 253773906 8159936 2649985..2650401 1 NC_012947.1 KEGG: ssn:SSON_1090 protein of flagellar biosynthesis; protein of flagellar biosynthesis 2650401 8159936 ECBD_2530 Escherichia coli 'BL21-Gold(DE3)pLysS AG' protein of flagellar biosynthesis YP_003036737.1 2649985 D 866768 CDS YP_003036738.1 253773907 8159937 complement(2650441..2651976) 1 NC_012947.1 TIGRFAM: integral membrane protein MviN; KEGG: sbc:SbBS512_E2257 integral membrane protein MviN; integral membrane protein MviN 2651976 8159937 ECBD_2531 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integral membrane protein MviN YP_003036738.1 2650441 R 866768 CDS YP_003036739.1 253773908 8159938 complement(2652086..2653009) 1 NC_012947.1 KEGG: elf:LF82_2713 virulence factor MviM homolog; virulence factor MviM-like protein 2653009 8159938 ECBD_2532 Escherichia coli 'BL21-Gold(DE3)pLysS AG' virulence factor MviM-like protein YP_003036739.1 2652086 R 866768 CDS YP_003036740.1 253773909 8159939 complement(2653011..2653658) 1 NC_012947.1 KEGG: ssn:SSON_1087 hypothetical protein; hypothetical protein 2653658 8159939 ECBD_2533 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036740.1 2653011 R 866768 CDS YP_003036741.1 253773910 8159940 complement(2653669..2654253) 1 NC_012947.1 KEGG: ssn:SSON_1086 ribosomal-protein-S5-alanine N-acetyltransferase; ribosomal-protein-S5-alanine N-acetyltransferase 2654253 8159940 ECBD_2534 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosomal-protein-S5-alanine N-acetyltransferase YP_003036741.1 2653669 R 866768 CDS YP_003036742.1 253773911 8159941 2654489..2655697 1 NC_012947.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 2655697 8159941 ECBD_2535 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug resistance protein MdtH YP_003036742.1 2654489 D 866768 CDS YP_003036743.1 253773912 8159942 2655761..2656408 1 NC_012947.1 cofactor involved in the reduction of disulfides; glutaredoxin 2656408 8159942 ECBD_2536 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutaredoxin YP_003036743.1 2655761 D 866768 CDS YP_003036744.1 253773913 8159943 2656542..2657102 1 NC_012947.1 KEGG: sfv:SFV_1085 hypothetical protein; hypothetical protein 2657102 8159943 ECBD_2537 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036744.1 2656542 D 866768 CDS YP_003036745.1 253773914 8159944 2657208..2658254 1 NC_012947.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2658254 8159944 ECBD_2538 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydroorotase YP_003036745.1 2657208 D 866768 CDS YP_003036746.1 253773915 8159945 2658328..2658573 1 NC_012947.1 PFAM: DinI family protein; KEGG: ssn:SSON_1081 DNA damage-inducible protein I; DNA damage-inducible protein I 2658573 8159945 ECBD_2539 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA damage-inducible protein I YP_003036746.1 2658328 D 866768 CDS YP_003036747.1 253773916 8159946 2658863..2659117 1 NC_012947.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS 2659117 bssS 8159946 bssS Escherichia coli 'BL21-Gold(DE3)pLysS AG' biofilm formation regulatory protein BssS YP_003036747.1 2658863 D 866768 CDS YP_003036748.1 253773917 8159947 2659232..2660350 1 NC_012947.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 2660350 solA 8159947 solA Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-methyltryptophan oxidase YP_003036748.1 2659232 D 866768 CDS YP_003036749.1 253773918 8159948 2660398..2660511 1 NC_012947.1 KEGG: sfv:SFV_1081 hypothetical protein; hypothetical protein 2660511 8159948 ECBD_2542 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036749.1 2660398 D 866768 CDS YP_003036750.1 253773919 8159949 2660772..2661338 1 NC_012947.1 PFAM: cytochrome B561; KEGG: sbc:SbBS512_E2271 nickel-dependent hydrogenase b-type cytochrome subunit; cytochrome B561 2661338 8159949 ECBD_2543 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome B561 YP_003036750.1 2660772 D 866768 CDS YP_003036751.1 253773920 8159950 2661342..2661917 1 NC_012947.1 PFAM: YceI family protein; KEGG: ssn:SSON_1076 hypothetical protein; hypothetical protein 2661917 8159950 ECBD_2544 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036751.1 2661342 D 866768 CDS YP_003036752.1 253773921 8159951 complement(2661959..2663011) 1 NC_012947.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: sfv:SFV_1078 hypothetical protein; hypothetical protein 2663011 8159951 ECBD_2545 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036752.1 2661959 R 866768 CDS YP_003036753.1 253773922 8159952 2663236..2664156 1 NC_012947.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 2664156 8159952 ECBD_2546 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipid A biosynthesis lauroyl acyltransferase YP_003036753.1 2663236 D 866768 CDS YP_003036754.1 253773923 8159953 2664328..2665554 1 NC_012947.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 2665554 8159953 ECBD_2547 Escherichia coli 'BL21-Gold(DE3)pLysS AG' drug efflux system protein MdtG YP_003036754.1 2664328 D 866768 CDS YP_003036755.1 253773924 8159954 2665637..2666011 1 NC_012947.1 KEGG: sdy:SDY_2299 hypothetical protein; hypothetical protein 2666011 8159954 ECBD_2548 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036755.1 2665637 D 866768 CDS YP_003036756.1 253773925 8159955 complement(2666012..2666239) 1 NC_012947.1 PFAM: protein of unknown function DUF1375; KEGG: sdy:SDY_2300 predicted lipoprotein; hypothetical protein 2666239 8159955 ECBD_2549 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036756.1 2666012 R 866768 CDS YP_003036757.1 253773926 8159956 complement(2666412..2668925) 1 NC_012947.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2668925 8159956 ECBD_2550 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucosyltransferase MdoH YP_003036757.1 2666412 R 866768 CDS YP_003036758.1 253773927 8159957 complement(2668948..2670483) 1 NC_012947.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2670483 mdoG 8159957 mdoG Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucan biosynthesis protein G YP_003036758.1 2668948 R 866768 CDS YP_003036759.1 253773928 8159958 2670877..2672034 1 NC_012947.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein 2672034 mdoC 8159958 mdoC Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucans biosynthesis protein YP_003036759.1 2670877 D 866768 CDS YP_003036760.1 253773929 8159959 complement(2672042..2673523) 1 NC_012947.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: sfx:S1116 synthase; phospholipase D/transphosphatidylase 2673523 8159959 ECBD_2553 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phospholipase D/transphosphatidylase YP_003036760.1 2672042 R 866768 CDS YP_003036761.1 253773930 8159960 complement(2673465..2673998) 1 NC_012947.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: ssn:SSON_1058 hypothetical protein; hypothetical protein 2673998 8159960 ECBD_2554 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036761.1 2673465 R 866768 CDS YP_003036762.1 253773931 8159961 complement(2674093..2674404) 1 NC_012947.1 KEGG: ssn:SSON_1057 hypothetical protein; hypothetical protein 2674404 8159961 ECBD_2555 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036762.1 2674093 R 866768 CDS YP_003036763.1 253773932 8159962 complement(2674525..2674857) 1 NC_012947.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 2674857 csgC 8159962 csgC Escherichia coli 'BL21-Gold(DE3)pLysS AG' autoagglutination protein YP_003036763.1 2674525 R 866768 CDS YP_003036764.1 253773933 8159963 complement(2674916..2675371) 1 NC_012947.1 PFAM: Curlin associated repeat protein; KEGG: sbo:SBO_2026 cryptic curlin major subunit; cryptic curlin major subunit 2675371 8159963 ECBD_2557 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cryptic curlin major subunit YP_003036764.1 2674916 R 866768 CDS YP_003036765.1 253773934 8159964 complement(2675412..2675867) 1 NC_012947.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 2675867 8159964 ECBD_2558 Escherichia coli 'BL21-Gold(DE3)pLysS AG' curlin minor subunit YP_003036765.1 2675412 R 866768 CDS YP_003036766.1 253773935 8159965 2676622..2677272 1 NC_012947.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 2677272 8159965 ECBD_2559 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator CsgD YP_003036766.1 2676622 D 866768 CDS YP_003036767.1 253773936 8159966 2677277..2677666 1 NC_012947.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 2677666 8159966 ECBD_2560 Escherichia coli 'BL21-Gold(DE3)pLysS AG' curli assembly protein CsgE YP_003036767.1 2677277 D 866768 CDS YP_003036768.1 253773937 8159967 2677691..2678107 1 NC_012947.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF 2678107 8159967 ECBD_2561 Escherichia coli 'BL21-Gold(DE3)pLysS AG' curli assembly protein CsgF YP_003036768.1 2677691 D 866768 CDS YP_003036769.1 253773938 8160291 2678134..2678967 1 NC_012947.1 PFAM: Curli production assembly/transport component CsgG; Curli production assembly/transport component CsgG 2678967 8160291 ECBD_2562 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Curli production assembly/transport component CsgG YP_003036769.1 2678134 D 866768 CDS YP_003036770.1 253773939 8159805 complement(2679031..2679552) 1 NC_012947.1 PFAM: protein of unknown function DUF1097; KEGG: sbo:SBO_2032 hypothetical protein; hypothetical protein 2679552 8159805 ECBD_2563 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036770.1 2679031 R 866768 CDS YP_003036771.1 253773940 8159806 complement(2679624..2680178) 1 NC_012947.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: sbc:SbBS512_E2294 chaperone, TorD family; cytoplasmic chaperone TorD family protein 2680178 8159806 ECBD_2564 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytoplasmic chaperone TorD family protein YP_003036771.1 2679624 R 866768 CDS YP_003036772.1 253773941 8159807 complement(2680202..2680939) 1 NC_012947.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sbc:SbBS512_E2295 PHP domain protein; hydrolase 2680939 8159807 ECBD_2565 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrolase YP_003036772.1 2680202 R 866768 CDS YP_003036773.1 253773942 8159808 complement(2680994..2681932) 1 NC_012947.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ssn:SSON_1042 dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 2681932 8159808 ECBD_2566 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003036773.1 2680994 R 866768 CDS YP_003036774.1 253773943 8159810 2682665..2682964 1 NC_012947.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2682964 8159810 ECBD_2567 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS3/IS911 family protein YP_003036774.1 2682665 D 866768 CDS YP_003036775.1 253773944 8159811 2682961..2683827 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; Integrase catalytic region 2683827 8159811 ECBD_2568 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003036775.1 2682961 D 866768 CDS YP_003036776.1 253773945 8159812 complement(2683868..2685226) 1 NC_012947.1 TIGRFAM: diguanylate cyclase; SMART: GGDEF domain containing protein; KEGG: elf:LF82_2700 inner membrane protein YcdT; diguanylate cyclase 2685226 8159812 ECBD_2569 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase YP_003036776.1 2683868 R 866768 CDS YP_003036777.1 253773946 8159813 2685813..2688236 1 NC_012947.1 outer membrane protein essential for the synthesis of poly-beta-1,6-N-acetyl-D-glucosamine (PGA); adhesin required for biofilm formation; PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface; member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia; outer membrane protein PgaA 2688236 pgaA 8159813 pgaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane protein PgaA YP_003036777.1 2685813 D 866768 CDS YP_003036778.1 253773947 8159814 2688245..2690263 1 NC_012947.1 in Yersinia this protein is involved in biofilm formation and hemin adsorption; related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1,6-N-acetyl-D-glucosamine (PGA) export; outer membrane N-deacetylase 2690263 pgaB 8159814 pgaB Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane N-deacetylase YP_003036778.1 2688245 D 866768 CDS YP_003036779.1 253773948 8159815 2690256..2691581 1 NC_012947.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 2691581 8159815 ECBD_2572 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-glycosyltransferase YP_003036779.1 2690256 D 866768 CDS YP_003036780.1 253773949 8159816 2691583..2691996 1 NC_012947.1 in Yersinia this gene is involved in biofilm formation and hemin adsorption; in Escherichia coli it is involved in PGA biosynthesis and export; PGA biosynthesis protein 2691996 pgaD 8159816 pgaD Escherichia coli 'BL21-Gold(DE3)pLysS AG' PGA biosynthesis protein YP_003036780.1 2691583 D 866768 CDS YP_003036781.1 253773950 8159817 complement(2692046..2693110) 1 NC_012947.1 KEGG: sbc:SbBS512_E2301 protein PhoH; hypothetical protein 2693110 8159817 ECBD_2574 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036781.1 2692046 R 866768 CDS YP_003036782.1 253773951 8159818 complement(2693455..2694726) 1 NC_012947.1 TIGRFAM: Dyp-type peroxidase family; KEGG: sbo:SBO_2039 hypothetical protein; Dyp-type peroxidase family 2694726 8159818 ECBD_2575 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Dyp-type peroxidase family YP_003036782.1 2693455 R 866768 CDS YP_003036783.1 253773952 8159819 complement(2694732..2695859) 1 NC_012947.1 KEGG: ssn:SSON_1037 hypothetical protein; hypothetical protein 2695859 8159819 ECBD_2576 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036783.1 2694732 R 866768 CDS YP_003036784.1 253773953 8159820 complement(2695917..2696747) 1 NC_012947.1 TIGRFAM: FTR1 family protein; KEGG: ssn:SSON_1036 high-affinity iron permease; FTR1 family protein 2696747 8159820 ECBD_2577 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FTR1 family protein YP_003036784.1 2695917 R 866768 CDS YP_003036785.1 253773954 8159821 complement(2697290..2698798) 1 NC_012947.1 TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; KEGG: sbo:SBO_2042 major sodium/proline symporter; sodium/proline symporter 2698798 8159821 ECBD_2578 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sodium/proline symporter YP_003036785.1 2697290 R 866768 CDS YP_003036786.1 253773955 8159822 complement(2698957..2699166) 1 NC_012947.1 KEGG: sbc:SbBS512_E2303 hypothetical protein; hypothetical protein 2699166 8159822 ECBD_2579 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036786.1 2698957 R 866768 CDS YP_003036787.1 253773956 8159823 2699221..2703183 1 NC_012947.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2703183 putA 8159823 putA Escherichia coli 'BL21-Gold(DE3)pLysS AG' trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_003036787.1 2699221 D 866768 CDS YP_003036788.1 253773957 8159824 complement(2703223..2703861) 1 NC_012947.1 PFAM: Tetracycline transcriptional regulator YcdC domain protein; regulatory protein TetR; KEGG: sbc:SbBS512_E2305 transcriptional regulator RutR; TetR family transcriptional regulator 2703861 8159824 ECBD_2581 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TetR family transcriptional regulator YP_003036788.1 2703223 R 866768 CDS YP_003036789.1 253773958 8159825 2704149..2705240 1 NC_012947.1 PFAM: Luciferase-like monooxygenase; Luciferase-like monooxygenase 2705240 8159825 ECBD_2582 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Luciferase-like monooxygenase YP_003036789.1 2704149 D 866768 CDS YP_003036790.1 253773959 8159826 2705237..2705932 1 NC_012947.1 PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_1030 synthetase; isochorismatase hydrolase 2705932 8159826 ECBD_2583 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isochorismatase hydrolase YP_003036790.1 2705237 D 866768 CDS YP_003036791.1 253773960 8159827 2705944..2706330 1 NC_012947.1 PFAM: endoribonuclease L-PSP; KEGG: sdy:SDY_0985 hypothetical protein; endoribonuclease L-PSP 2706330 8159827 ECBD_2584 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endoribonuclease L-PSP YP_003036791.1 2705944 D 866768 CDS YP_003036792.1 253773961 8159828 2706338..2707138 1 NC_012947.1 PFAM: alpha/beta hydrolase fold; KEGG: ssn:SSON_1027 acetyltransferase; alpha/beta hydrolase fold protein 2707138 8159828 ECBD_2585 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha/beta hydrolase fold protein YP_003036792.1 2706338 D 866768 CDS YP_003036793.1 253773962 8159829 2707148..2707738 1 NC_012947.1 PFAM: nitroreductase; KEGG: elf:LF82_2053 NadH dehydrogenase/NAD(P)H nitroreductase RutE; hypothetical protein 2707738 8159829 ECBD_2586 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036793.1 2707148 D 866768 CDS YP_003036794.1 253773963 8159830 2707749..2708243 1 NC_012947.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: elf:LF82_2054 flavin reductase RutF; flavin reductase domain protein FMN-binding 2708243 8159830 ECBD_2587 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flavin reductase domain protein FMN-binding YP_003036794.1 2707749 D 866768 CDS YP_003036795.1 253773964 8159831 2708264..2709592 1 NC_012947.1 TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_1024 transport protein; uracil-xanthine permease 2709592 8159831 ECBD_2588 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uracil-xanthine permease YP_003036795.1 2708264 D 866768 CDS YP_003036796.1 253773965 8159832 complement(2709850..2710023) 1 NC_012947.1 KEGG: elf:LF82_3538 uncharacterized protein YmdF; hypothetical protein 2710023 8159832 ECBD_2589 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036796.1 2709850 R 866768 CDS YP_003036797.1 253773966 8159833 2710396..2710992 1 NC_012947.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 2710992 8159833 ECBD_2590 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TrpR binding protein WrbA YP_003036797.1 2710396 D 866768 CDS YP_003036798.1 253773967 8159834 2711013..2711240 1 NC_012947.1 KEGG: sfv:SFV_1015 hypothetical protein; hypothetical protein 2711240 8159834 ECBD_2591 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036798.1 2711013 D 866768 CDS YP_003036799.1 253773968 8159835 complement(2711278..2712519) 1 NC_012947.1 PFAM: histidine acid phosphatase; KEGG: ssn:SSON_1012 glucose-1-phosphatase/inositol phosphatase; glucose-1-phosphatase/inositol phosphatase 2712519 8159835 ECBD_2592 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucose-1-phosphatase/inositol phosphatase YP_003036799.1 2711278 R 866768 CDS YP_003036800.1 253773969 8159836 complement(2712802..2714061) 1 NC_012947.1 KEGG: sfx:S1074 hypothetical protein; hypothetical protein 2714061 8159836 ECBD_2593 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036800.1 2712802 R 866768 CDS YP_003036801.1 253773970 8159837 2714322..2715242 1 NC_012947.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA 2715242 8159837 ECBD_2594 Escherichia coli 'BL21-Gold(DE3)pLysS AG' curved DNA-binding protein CbpA YP_003036801.1 2714322 D 866768 CDS YP_003036802.1 253773971 8159838 2715242..2715547 1 NC_012947.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 2715547 8159838 ECBD_2595 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chaperone-modulator protein CbpM YP_003036802.1 2715242 D 866768 CDS YP_003036803.1 253773972 8159839 complement(2715699..2716298) 1 NC_012947.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 2716298 torD 8159839 torD Escherichia coli 'BL21-Gold(DE3)pLysS AG' chaperone protein TorD YP_003036803.1 2715699 R 866768 CDS YP_003036804.1 253773973 8159840 complement(2716295..2718841) 1 NC_012947.1 KEGG: sfv:SFV_1007 trimethylamine N-oxide reductase subunit; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 2718841 8159840 ECBD_2597 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_003036804.1 2716295 R 866768 CDS YP_003036805.1 253773974 8159841 complement(2718841..2720013) 1 NC_012947.1 TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome C domain protein; KEGG: efe:EFER_1191 trimethylamine N-oxide (TMAO) reductase I, cytochrome C subunit; trimethylamine-N-oxide reductase c-type cytochrome TorC 2720013 8159841 ECBD_2598 Escherichia coli 'BL21-Gold(DE3)pLysS AG' trimethylamine-N-oxide reductase c-type cytochrome TorC YP_003036805.1 2718841 R 866768 CDS YP_003036806.1 253773975 8159842 2720143..2720835 1 NC_012947.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 2720835 8159842 ECBD_2599 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator TorR YP_003036806.1 2720143 D 866768 CDS YP_003036807.1 253773976 8159843 complement(2720808..2721836) 1 NC_012947.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 2721836 8159843 ECBD_2600 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TMAO reductase system periplasmic protein TorT YP_003036807.1 2720808 R 866768 CDS YP_003036808.1 253773977 8159844 2721964..2724663 1 NC_012947.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 2724663 8159844 ECBD_2601 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hybrid sensory histidine kinase TorS YP_003036808.1 2721964 D 866768 CDS YP_003036809.1 253773978 8159845 2724735..2725808 1 NC_012947.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2322 4Fe-4S binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein 2725808 8159845 ECBD_2602 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003036809.1 2724735 D 866768 CDS YP_003036810.1 253773979 8159846 complement(2725856..2726029) 1 NC_012947.1 PFAM: GnsAGnsB family protein; KEGG: ssn:SSON_0999 GnsA; GnsAGnsB family protein 2726029 8159846 ECBD_2603 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GnsAGnsB family protein YP_003036810.1 2725856 R 866768 CDS YP_003036811.1 253773980 8159847 complement(2726019..2726249) 1 NC_012947.1 KEGG: ssn:SSON_0998 cold shock gene; cold shock gene 2726249 8159847 ECBD_2604 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cold shock gene YP_003036811.1 2726019 R 866768 CDS YP_003036812.1 253773981 8159848 complement(2726423..2726635) 1 NC_012947.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ssn:SSON_0997 DNA-binding transcriptional regulator; cold shock protein CspG 2726635 8159848 ECBD_2605 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cold shock protein CspG YP_003036812.1 2726423 R 866768 CDS YP_003036813.1 253773982 8159849 2726921..2727133 1 NC_012947.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sdy:SDY_0964 cold shock-like protein; cold-shock DNA-binding domain protein 2727133 8159849 ECBD_2606 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cold-shock DNA-binding domain protein YP_003036813.1 2726921 D 866768 CDS YP_003036814.1 253773983 8159850 2727552..2727857 1 NC_012947.1 KEGG: sbc:SbBS512_E2328 inner membrane protein; inner membrane protein 2727857 8159850 ECBD_2607 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane protein YP_003036814.1 2727552 D 866768 CDS YP_003036815.1 253773984 8159851 2727964..2728608 1 NC_012947.1 KEGG: ssn:SSON_0993 regulator; regulator 2728608 8159851 ECBD_2608 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulator YP_003036815.1 2727964 D 866768 CDS YP_003036816.1 253773985 8159852 2728605..2729351 1 NC_012947.1 PFAM: protein of unknown function DUF1017; KEGG: ssn:SSON_0992 hypothetical protein; hypothetical protein 2729351 8159852 ECBD_2609 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036816.1 2728605 D 866768 CDS YP_003036817.1 253773986 8159853 2729351..2731447 1 NC_012947.1 PFAM: protein of unknown function DUF940 membrane lipoprotein KEGG: sbo:SBO_2246 hypothetical protein; hypothetical protein 2731447 8159853 ECBD_2610 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036817.1 2729351 D 866768 CDS YP_003036818.1 253773987 8159854 2731472..2732632 1 NC_012947.1 PFAM: polysaccharide export protein; KEGG: sfv:SFV_0992 function in exopolysaccharide production; polysaccharide export protein 2732632 8159854 ECBD_2611 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polysaccharide export protein YP_003036818.1 2731472 D 866768 CDS YP_003036819.1 253773988 8159855 2732620..2733066 1 NC_012947.1 Etk and Etp are a tyrosine kinase-tyrosine phosphatase pair, etp dephosphorylates etk; phosphotyrosine-protein phosphatase 2733066 etp 8159855 etp Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphotyrosine-protein phosphatase YP_003036819.1 2732620 D 866768 CDS YP_003036820.1 253773989 8159856 2733086..2735266 1 NC_012947.1 KEGG: sbo:SBO_2249 cryptic autophosphorylating protein tyrosine kinase Etk; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; cryptic autophosphorylating protein tyrosine kinase Etk 2735266 8159856 ECBD_2613 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cryptic autophosphorylating protein tyrosine kinase Etk YP_003036820.1 2733086 D 866768 CDS YP_003036821.1 253773990 8159857 complement(2735381..2736679) 1 NC_012947.1 PFAM: histidine acid phosphatase; KEGG: ssn:SSON_0987 phosphoanhydride phosphorylase; phosphoanhydride phosphorylase 2736679 8159857 ECBD_2614 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoanhydride phosphorylase YP_003036821.1 2735381 R 866768 CDS YP_003036822.1 253773991 8159858 complement(2736759..2736851) 1 NC_012947.1 expressed during stationary phase; membrane protein 2736851 8159858 ECBD_2615 Escherichia coli 'BL21-Gold(DE3)pLysS AG' membrane protein YP_003036822.1 2736759 R 866768 CDS YP_003036823.1 253773992 8159859 complement(2736864..2738000) 1 NC_012947.1 TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: ssn:SSON_0985 probable third cytochrome oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 2738000 8159859 ECBD_2616 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome d ubiquinol oxidase subunit II YP_003036823.1 2736864 R 866768 CDS YP_003036824.1 253773993 8159860 complement(2738012..2739556) 1 NC_012947.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sfv:SFV_0987 third cytochrome oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 2739556 8159860 ECBD_2617 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome bd ubiquinol oxidase subunit I YP_003036824.1 2738012 R 866768 CDS YP_003036825.1 253773994 8159861 complement(2739690..2740547) 1 NC_012947.1 PFAM: HupH hydrogenase expression protein; KEGG: sbc:SbBS512_E2338 hydrogenase-1 operon protein HyaF; HupH hydrogenase expression protein 2740547 8159861 ECBD_2618 Escherichia coli 'BL21-Gold(DE3)pLysS AG' HupH hydrogenase expression protein YP_003036825.1 2739690 R 866768 CDS YP_003036826.1 253773995 8159862 complement(2740544..2740942) 1 NC_012947.1 involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 2740942 8159862 ECBD_2619 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase-1 operon protein HyaE YP_003036826.1 2740544 R 866768 CDS YP_003036827.1 253773996 8159863 complement(2740939..2741526) 1 NC_012947.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 2741526 8159863 ECBD_2620 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 1 maturation protease YP_003036827.1 2740939 R 866768 CDS YP_003036828.1 253773997 8159864 complement(2741523..2742230) 1 NC_012947.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: sdy:SDY_0949 hydrogenase 1 b-type cytochrome subunit; hydrogenase 1 b-type cytochrome subunit 2742230 8159864 ECBD_2621 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 1 b-type cytochrome subunit YP_003036828.1 2741523 R 866768 CDS YP_003036829.1 253773998 8159865 complement(2742249..2744042) 1 NC_012947.1 involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 2744042 8159865 ECBD_2622 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase 1 large subunit YP_003036829.1 2742249 R 866768 CDS YP_003036830.1 253773999 8159866 complement(2744039..2745157) 1 NC_012947.1 KEGG: sdy:SDY_0947 hydrogenase-1 small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 2745157 8159866 ECBD_2623 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrogenase (NiFe) small subunit HydA YP_003036830.1 2744039 R 866768 CDS YP_003036831.1 253774000 8159868 2745878..2746537 1 NC_012947.1 PFAM: protein of unknown function UPF0005; KEGG: sdy:SDY_0945 hypothetical protein; hypothetical protein 2746537 8159868 ECBD_2624 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036831.1 2745878 D 866768 CDS YP_003036832.1 253774001 8159869 2746628..2746957 1 NC_012947.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE 2746957 8159869 ECBD_2625 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfur transfer protein TusE YP_003036832.1 2746628 D 866768 CDS YP_003036833.1 253774002 8159870 complement(2746954..2747232) 1 NC_012947.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 2747232 8159870 ECBD_2626 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acylphosphatase YP_003036833.1 2746954 R 866768 CDS YP_003036834.1 253774003 8159871 2747342..2748517 1 NC_012947.1 PFAM: protein of unknown function methylase SMART: PUA domain containing protein; KEGG: elf:LF82_2696 UPF0064 protein YccW; hypothetical protein 2748517 8159871 ECBD_2627 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036834.1 2747342 D 866768 CDS YP_003036835.1 253774004 8159872 2748575..2748892 1 NC_012947.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: ssn:SSON_0971 hypothetical protein; heat shock protein HspQ 2748892 8159872 ECBD_2628 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat shock protein HspQ YP_003036835.1 2748575 D 866768 CDS YP_003036836.1 253774005 8159873 complement(2748937..2749350) 1 NC_012947.1 PFAM: CoA-binding protein; KEGG: sbc:SbBS512_E2350 CoA-binding protein; CoA-binding protein 2749350 8159873 ECBD_2629 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CoA-binding protein YP_003036836.1 2748937 R 866768 CDS YP_003036837.1 253774006 8159874 2749523..2750185 1 NC_012947.1 KEGG: ssn:SSON_0968 hypothetical protein; hypothetical protein 2750185 8159874 ECBD_2630 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036837.1 2749523 D 866768 CDS YP_003036838.1 253774007 8159875 2750281..2750739 1 NC_012947.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 2750739 mgsA 8159875 mgsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' methylglyoxal synthase YP_003036838.1 2750281 D 866768 CDS YP_003036839.1 253774008 8159876 complement(2750771..2752825) 1 NC_012947.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 2752825 helD 8159876 helD Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA helicase IV YP_003036839.1 2750771 R 866768 CDS YP_003036840.1 253774009 8159877 2752948..2753394 1 NC_012947.1 PFAM: protein of unknown function DUF307; KEGG: sbc:SbBS512_E2354 hypothetical protein; hypothetical protein 2753394 8159877 ECBD_2633 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036840.1 2752948 D 866768 CDS YP_003036841.1 253774010 8159878 2753404..2755566 1 NC_012947.1 TIGRFAM: hypothetical protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: ssn:SSON_0964 hypothetical protein; hypothetical protein 2755566 8159878 ECBD_2634 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036841.1 2753404 D 866768 CDS YP_003036842.1 253774011 8159879 complement(2755529..2756158) 1 NC_012947.1 PFAM: TfoX domain protein; KEGG: ssn:SSON_0963 hypothetical protein; regulator of competence-specific genes 2756158 8159879 ECBD_2635 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulator of competence-specific genes YP_003036842.1 2755529 R 866768 CDS YP_003036843.1 253774012 8159880 2756377..2756886 1 NC_012947.1 TIGRFAM: cell division inhibitor SulA; PFAM: cell division inhibitor SulA; KEGG: ssn:SSON_0962 SOS cell division inhibitor; SOS cell division inhibitor 2756886 8159880 ECBD_2636 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SOS cell division inhibitor YP_003036843.1 2756377 D 866768 CDS YP_003036844.1 253774013 8159881 complement(2756870..2757088) 1 NC_012947.1 hypothetical protein 2757088 8159881 ECBD_2637 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036844.1 2756870 R 866768 CDS YP_003036845.1 253774014 8159882 2757243..2758283 1 NC_012947.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A 2758283 8159882 ECBD_2638 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane protein A YP_003036845.1 2757243 D 866768 CDS YP_003036846.1 253774015 8159883 complement(2758359..2758811) 1 NC_012947.1 PFAM: protein of unknown function DUF1047; KEGG: sdy:SDY_0929 hypothetical protein; hypothetical protein 2758811 8159883 ECBD_2639 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036846.1 2758359 R 866768 CDS YP_003036847.1 253774016 8159884 2758997..2760757 1 NC_012947.1 KEGG: ssn:SSON_0959 ATP-dependent protease; ATP-dependent protease 2760757 8159884 ECBD_2640 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent protease YP_003036847.1 2758997 D 866768 CDS YP_003036848.1 253774017 8158990 2760826..2761344 1 NC_012947.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 2761344 8158990 ECBD_2641 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_003036848.1 2760826 D 866768 CDS YP_003036849.1 253774018 8158991 complement(2761414..2761581) 1 NC_012947.1 PFAM: ribosome modulation factor; KEGG: sdy:SDY_0926 ribosome modulation factor; ribosome modulation factor 2761581 8158991 ECBD_2642 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosome modulation factor YP_003036849.1 2761414 R 866768 CDS YP_003036850.1 253774019 8158992 complement(2761837..2762400) 1 NC_012947.1 PFAM: protein of unknown function DUF330; KEGG: sfv:SFV_0961 hypothetical protein; hypothetical protein 2762400 8158992 ECBD_2643 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036850.1 2761837 R 866768 CDS YP_003036851.1 253774020 8157425 complement(2762397..2764037) 1 NC_012947.1 PFAM: hypothetical protein; KEGG: sdy:SDY_0924 paraquat-inducible protein B; paraquat-inducible protein B 2764037 8157425 ECBD_2644 Escherichia coli 'BL21-Gold(DE3)pLysS AG' paraquat-inducible protein B YP_003036851.1 2762397 R 866768 CDS YP_003036852.1 253774021 8157426 complement(2764042..2765295) 1 NC_012947.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: paraquat-inducible protein A; KEGG: sfv:SFV_0959 paraquat-inducible protein A; integral membrane protein, PqiA family 2765295 8157426 ECBD_2645 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integral membrane protein, PqiA family YP_003036852.1 2764042 R 866768 CDS YP_003036853.1 253774022 8157427 complement(2765425..2767332) 1 NC_012947.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 2767332 8157427 ECBD_2646 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATPase YP_003036853.1 2765425 R 866768 CDS YP_003036854.1 253774023 8157428 complement(2767344..2769452) 1 NC_012947.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2769452 rlmL 8157428 rlmL Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA m(2)G2445 methyltransferase YP_003036854.1 2767344 R 866768 CDS YP_003036855.1 253774024 8157429 2769696..2770805 1 NC_012947.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; ferredoxin; KEGG: sbc:SbBS512_E2371 MOSC domain protein; MOSC domain containing protein 2770805 8157429 ECBD_2648 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MOSC domain containing protein YP_003036855.1 2769696 D 866768 CDS YP_003036856.1 253774025 8157430 complement(2770802..2771344) 1 NC_012947.1 PFAM: protein of unknown function DUF1379; KEGG: sbc:SbBS512_E2370 hypothetical protein; hypothetical protein 2771344 8157430 ECBD_2649 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036856.1 2770802 R 866768 CDS YP_003036857.1 253774026 8157431 complement(2771518..2772528) 1 NC_012947.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2772528 8157431 ECBD_2650 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydroorotate dehydrogenase 2 YP_003036857.1 2771518 R 866768 CDS YP_003036858.1 253774027 8157432 complement(2772639..2773349) 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_0948 hypothetical protein; putativi pili assembly chaperone 2773349 8157432 ECBD_2651 Escherichia coli 'BL21-Gold(DE3)pLysS AG' putativi pili assembly chaperone YP_003036858.1 2772639 R 866768 CDS YP_003036859.1 253774028 8157433 complement(2773342..2773857) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: ssn:SSON_0947 fimbrial-like protein; fimbrial protein 2773857 8157433 ECBD_2652 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003036859.1 2773342 R 866768 CDS YP_003036860.1 253774029 8157434 complement(2773865..2774407) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: sbc:SbBS512_E2375 fimbrial protein; fimbrial protein 2774407 8157434 ECBD_2653 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003036860.1 2773865 R 866768 CDS YP_003036861.1 253774030 8157435 complement(2774419..2775489) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: sbc:SbBS512_E2376 fimbrial protein; fimbrial protein 2775489 8157435 ECBD_2654 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003036861.1 2774419 R 866768 CDS YP_003036862.1 253774031 8157436 complement(2775480..2778080) 1 NC_012947.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfv:SFV_0949 outer membrane protein; fimbrial biogenesis outer membrane usher protein 2778080 8157436 ECBD_2655 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial biogenesis outer membrane usher protein YP_003036862.1 2775480 R 866768 CDS YP_003036863.1 253774032 8157437 complement(2778105..2778806) 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_0943 chaperone; Pili assembly chaperone, N-terminal 2778806 8157437 ECBD_2656 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Pili assembly chaperone, N-terminal YP_003036863.1 2778105 R 866768 CDS YP_003036864.1 253774033 8157438 complement(2778889..2779428) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: sbc:SbBS512_E2380 fimbrial protein; fimbrial protein 2779428 8157438 ECBD_2657 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003036864.1 2778889 R 866768 CDS YP_003036865.1 253774034 8157439 2779784..2780359 1 NC_012947.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: sbc:SbBS512_E2381 NADPH-dependent FMN reductase; NAD(P)H-dependent FMN reductase 2780359 8157439 ECBD_2658 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD(P)H-dependent FMN reductase YP_003036865.1 2779784 D 866768 CDS YP_003036866.1 253774035 8157440 2780352..2781311 1 NC_012947.1 part of the ABC type transporter SsuABC for aliphatic sulfonates; with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease; alkanesulfonate transporter substrate-binding subunit 2781311 8157440 ECBD_2659 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alkanesulfonate transporter substrate-binding subunit YP_003036866.1 2780352 D 866768 CDS YP_003036867.1 253774036 8157441 2781308..2782453 1 NC_012947.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 2782453 8157441 ECBD_2660 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alkanesulfonate monooxygenase YP_003036867.1 2781308 D 866768 CDS YP_003036868.1 253774037 8157442 2782464..2783255 1 NC_012947.1 part of the ABC type transporter for alkanesulfonate SsuABC; SsuB the ATP-binding subunit and SsuC the permease; alkanesulfonate transporter permease subunit 2783255 ssuC 8157442 ssuC Escherichia coli 'BL21-Gold(DE3)pLysS AG' alkanesulfonate transporter permease subunit YP_003036868.1 2782464 D 866768 CDS YP_003036869.1 253774038 8157443 2783252..2784019 1 NC_012947.1 part of the ABC type transporter SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit 2784019 ssuB 8157443 ssuB Escherichia coli 'BL21-Gold(DE3)pLysS AG' aliphatic sulfonates transport ATP-binding subunit YP_003036869.1 2783252 D 866768 CDS YP_003036870.1 253774039 8157444 complement(2784062..2786674) 1 NC_012947.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; aminopeptidase N 2786674 pepN 8157444 pepN Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminopeptidase N YP_003036870.1 2784062 R 866768 CDS YP_003036871.1 253774040 8157445 2786940..2788142 1 NC_012947.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2788142 8157445 ECBD_2664 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nicotinate phosphoribosyltransferase YP_003036871.1 2786940 D 866768 CDS YP_003036872.1 253774041 8157446 2788311..2789711 1 NC_012947.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2789711 asnC 8157446 asnC Escherichia coli 'BL21-Gold(DE3)pLysS AG' asparaginyl-tRNA synthetase YP_003036872.1 2788311 D 866768 CDS YP_003036873.1 253774042 8157447 2790313..2791401 1 NC_012947.1 outer membrane porin F; 1a; Ia; b; outer membrane protein F 2791401 8157447 ECBD_2666 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane protein F YP_003036873.1 2790313 D 866768 CDS YP_003036874.1 253774043 8157448 2791586..2792776 1 NC_012947.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2792776 8157448 ECBD_2667 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aromatic amino acid aminotransferase YP_003036874.1 2791586 D 866768 CDS YP_003036875.1 253774044 8157449 complement(2792998..2793645) 1 NC_012947.1 PFAM: beta-lactamase; KEGG: sbo:SBO_2218 hypothetical protein; beta-lactamase 2793645 8157449 ECBD_2668 Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-lactamase YP_003036875.1 2792998 R 866768 CDS YP_003036876.1 253774045 8157450 complement(2793672..2794220) 1 NC_012947.1 PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: sdy:SDY_2331 hypothetical protein; hypothetical protein 2794220 8157450 ECBD_2669 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036876.1 2793672 R 866768 CDS YP_003036877.1 253774046 8157451 complement(2794401..2796248) 1 NC_012947.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding protein; KEGG: sbo:SBO_2216 hypothetical protein; hypothetical protein 2796248 8157451 ECBD_2670 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036877.1 2794401 R 866768 CDS YP_003036878.1 253774047 8157452 complement(2796509..2800969) 1 NC_012947.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 2800969 mukB 8157452 mukB Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein MukB YP_003036878.1 2796509 R 866768 CDS YP_003036879.1 253774048 8157453 complement(2800969..2801673) 1 NC_012947.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 2801673 8157453 ECBD_2672 Escherichia coli 'BL21-Gold(DE3)pLysS AG' condesin subunit E YP_003036879.1 2800969 R 866768 CDS YP_003036880.1 253774049 8157454 complement(2801654..2802976) 1 NC_012947.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 2802976 8157454 ECBD_2673 Escherichia coli 'BL21-Gold(DE3)pLysS AG' condesin subunit F YP_003036880.1 2801654 R 866768 CDS YP_003036881.1 253774050 8157455 complement(2802973..2803758) 1 NC_012947.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 2803758 8157455 ECBD_2674 Escherichia coli 'BL21-Gold(DE3)pLysS AG' metallothionein SmtA YP_003036881.1 2802973 R 866768 CDS YP_003036882.1 253774051 8157456 2803894..2804673 1 NC_012947.1 PFAM: protein of unknown function DUF218; KEGG: elf:LF82_2680 uncharacterized protein YcbC; hypothetical protein 2804673 8157456 ECBD_2675 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036882.1 2803894 D 866768 CDS YP_003036883.1 253774052 8157457 complement(2804650..2805543) 1 NC_012947.1 KEGG: sbc:SbBS512_E2404 hypothetical protein; hypothetical protein 2805543 8157457 ECBD_2676 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036883.1 2804650 R 866768 CDS YP_003036884.1 253774053 8157458 complement(2805697..2806443) 1 NC_012947.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2806443 8157458 ECBD_2677 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-deoxy-manno-octulosonate cytidylyltransferase YP_003036884.1 2805697 R 866768 CDS YP_003036885.1 253774054 8157459 complement(2806440..2806622) 1 NC_012947.1 PFAM: protein of unknown function DUF343; KEGG: ssn:SSON_0919 hypothetical protein; hypothetical protein 2806622 8157459 ECBD_2678 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036885.1 2806440 R 866768 CDS YP_003036886.1 253774055 8157460 complement(2806674..2807906) 1 NC_012947.1 PFAM: protein of unknown function DUF1006; KEGG: sdy:SDY_2342 hypothetical protein; hypothetical protein 2807906 8157460 ECBD_2679 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036886.1 2806674 R 866768 CDS YP_003036887.1 253774056 8157461 complement(2807943..2808929) 1 NC_012947.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2808929 lpxK 8157461 lpxK Escherichia coli 'BL21-Gold(DE3)pLysS AG' tetraacyldisaccharide 4'-kinase YP_003036887.1 2807943 R 866768 CDS YP_003036888.1 253774057 8157462 complement(2808926..2810674) 1 NC_012947.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 2810674 8157462 ECBD_2681 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipid transporter ATP-binding/permease YP_003036888.1 2808926 R 866768 CDS YP_003036889.1 253774058 8157463 complement(2810711..2812975) 1 NC_012947.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase; KEGG: sdy:SDY_2345 hypothetical protein; hypothetical protein 2812975 8157463 ECBD_2682 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036889.1 2810711 R 866768 CDS YP_003036890.1 253774059 8157464 complement(2813183..2813467) 1 NC_012947.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2813467 ihfB 8157464 ihfB Escherichia coli 'BL21-Gold(DE3)pLysS AG' integration host factor subunit beta YP_003036890.1 2813183 R 866768 CDS YP_003036891.1 253774060 8157465 complement(2813627..2815300) 1 NC_012947.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2815300 rpsA 8157465 rpsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S1 YP_003036891.1 2813627 R 866768 CDS YP_003036892.1 253774061 8157466 complement(2815411..2816094) 1 NC_012947.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2816094 cmk 8157466 cmk Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytidylate kinase YP_003036892.1 2815411 R 866768 CDS YP_003036893.1 253774062 8157467 complement(2816267..2817031) 1 NC_012947.1 PFAM: peptidase M48 Ste24p; KEGG: ssn:SSON_0911 heat shock protein; peptidase M48 Ste24p 2817031 8157467 ECBD_2686 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase M48 Ste24p YP_003036893.1 2816267 R 866768 CDS YP_003036894.1 253774063 8157468 complement(2817200..2818483) 1 NC_012947.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2818483 8157468 ECBD_2687 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-phosphoshikimate 1-carboxyvinyltransferase YP_003036894.1 2817200 R 866768 CDS YP_003036895.1 253774064 8157469 complement(2818554..2819642) 1 NC_012947.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2819642 8157469 ECBD_2688 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoserine aminotransferase YP_003036895.1 2818554 R 866768 CDS YP_003036896.1 253774065 8157470 complement(2819841..2820533) 1 NC_012947.1 PFAM: protein of unknown function DUF421; KEGG: ssn:SSON_0907 hypothetical protein; hypothetical protein 2820533 8157470 ECBD_2689 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036896.1 2819841 R 866768 CDS YP_003036897.1 253774066 8157471 2820663..2822423 1 NC_012947.1 PFAM: protein of unknown function DUF181; KEGG: ssn:SSON_0906 hypothetical protein; hypothetical protein 2822423 8157471 ECBD_2690 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036897.1 2820663 D 866768 CDS YP_003036898.1 253774067 8157472 2822828..2823685 1 NC_012947.1 TIGRFAM: formate/nitrite transporter; PFAM: formate/nitrite transporter; KEGG: ssn:SSON_0905 formate transporter; formate transporter 2823685 8157472 ECBD_2691 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate transporter YP_003036898.1 2822828 D 866768 CDS YP_003036899.1 253774068 8157473 2823740..2826022 1 NC_012947.1 KEGG: ssn:SSON_0904 formate acetyltransferase 1; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; formate acetyltransferase 2826022 8157473 ECBD_2692 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate acetyltransferase YP_003036899.1 2823740 D 866768 CDS YP_003036900.1 253774069 8157474 2826214..2826954 1 NC_012947.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2826954 pflA 8157474 pflA Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvate formate lyase-activating enzyme 1 YP_003036900.1 2826214 D 866768 CDS YP_003036901.1 253774070 8157475 complement(2827036..2827626) 1 NC_012947.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbo:SBO_2185 hypothetical protein; hypothetical protein 2827626 8157475 ECBD_2694 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036901.1 2827036 R 866768 CDS YP_003036902.1 253774071 8157476 2827726..2828634 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_2184 transcriptional regulator LysR-type; LysR family transcriptional regulator 2828634 8157476 ECBD_2695 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003036902.1 2827726 D 866768 CDS YP_003036903.1 253774072 8157477 complement(2828635..2830065) 1 NC_012947.1 PFAM: amino acid permease-associated region; amino acid permease-associated region 2830065 8157477 ECBD_2696 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid permease-associated region YP_003036903.1 2828635 R 866768 CDS YP_003036904.1 253774073 8157478 complement(2830275..2831423) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_2363 MFS family transporter protein; MFS family transporter protein 2831423 8157478 ECBD_2697 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MFS family transporter protein YP_003036904.1 2830275 R 866768 CDS YP_003036905.1 253774074 8157479 2831737..2832363 1 NC_012947.1 PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_0898 hypothetical protein; isochorismatase hydrolase 2832363 8157479 ECBD_2698 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isochorismatase hydrolase YP_003036905.1 2831737 D 866768 CDS YP_003036906.1 253774075 8157480 complement(2832398..2833261) 1 NC_012947.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: sbc:SbBS512_E2432 anaerobic dimethyl sulfoxide reductase, C subunit; DMSO reductase anchor subunit (DmsC) 2833261 8157480 ECBD_2699 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DMSO reductase anchor subunit (DmsC) YP_003036906.1 2832398 R 866768 CDS YP_003036907.1 253774076 8157481 complement(2833263..2833880) 1 NC_012947.1 TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ssn:SSON_0896 anaerobic dimethyl sulfoxide reductase subunit B; dimethylsulfoxide reductase, chain B 2833880 8157481 ECBD_2700 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dimethylsulfoxide reductase, chain B YP_003036907.1 2833263 R 866768 CDS YP_003036908.1 253774077 8157482 complement(2833891..2836335) 1 NC_012947.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; anaerobic dimethyl sulfoxide reductase, subunit alpha, DmsA/YnfE family 2836335 8157482 ECBD_2701 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic dimethyl sulfoxide reductase, subunit alpha, DmsA/YnfE family YP_003036908.1 2833891 R 866768 CDS YP_003036909.1 253774078 8157483 complement(2836574..2837866) 1 NC_012947.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2837866 8157483 ECBD_2702 Escherichia coli 'BL21-Gold(DE3)pLysS AG' seryl-tRNA synthetase YP_003036909.1 2836574 R 866768 CDS YP_003036910.1 253774079 8157484 complement(2837957..2839300) 1 NC_012947.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sdy:SDY_2369 recombination factor protein RarA; recombination factor protein RarA 2839300 8157484 ECBD_2703 Escherichia coli 'BL21-Gold(DE3)pLysS AG' recombination factor protein RarA YP_003036910.1 2837957 R 866768 CDS YP_003036911.1 253774080 8157485 complement(2839311..2839922) 1 NC_012947.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 2839922 lolA 8157485 lolA Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer-membrane lipoprotein carrier protein YP_003036911.1 2839311 R 866768 CDS YP_003036912.1 253774081 8157486 complement(2840077..2844105) 1 NC_012947.1 DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 2844105 8157486 ECBD_2705 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA translocase FtsK YP_003036912.1 2840077 R 866768 CDS YP_003036913.1 253774082 8157487 complement(2844240..2844734) 1 NC_012947.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transporter; leucine-responsive transcriptional regulator 2844734 8157487 ECBD_2706 Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucine-responsive transcriptional regulator YP_003036913.1 2844240 R 866768 CDS YP_003036914.1 253774083 8157488 2845279..2846244 1 NC_012947.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 2846244 8157488 ECBD_2707 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thioredoxin reductase YP_003036914.1 2845279 D 866768 CDS YP_003036915.1 253774084 8157489 2846367..2848133 1 NC_012947.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 2848133 8157489 ECBD_2708 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine/glutathione ABC transporter membrane/ATP-binding component YP_003036915.1 2846367 D 866768 CDS YP_003036916.1 253774085 8157490 2848134..2849855 1 NC_012947.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 2849855 8157490 ECBD_2709 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteine/glutathione ABC transporter membrane/ATP-binding component YP_003036916.1 2848134 D 866768 CDS YP_003036917.1 253774086 8157491 2849897..2850601 1 NC_012947.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2850601 aat 8157491 aat Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucyl/phenylalanyl-tRNA--protein transferase YP_003036917.1 2849897 D 866768 CDS YP_003036918.1 253774087 8157492 2850886..2851104 1 NC_012947.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2851104 infA 8157492 infA Escherichia coli 'BL21-Gold(DE3)pLysS AG' translation initiation factor IF-1 YP_003036918.1 2850886 D 866768 CDS YP_003036919.1 253774088 8157494 complement(2852142..2854418) 1 NC_012947.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 2854418 clpA 8157494 clpA Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent Clp protease ATP-binding subunit YP_003036919.1 2852142 R 866768 CDS YP_003036920.1 253774089 8157495 complement(2854449..2854769) 1 NC_012947.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2854769 clpS 8157495 clpS Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent Clp protease adaptor protein ClpS YP_003036920.1 2854449 R 866768 CDS YP_003036921.1 253774090 8157496 2855092..2855316 1 NC_012947.1 inhibits DNA replication at both initiation and elongation steps; stationary phase and starvation inducible; stationary phase/starvation inducible regulatory protein CspD 2855316 8157496 ECBD_2714 Escherichia coli 'BL21-Gold(DE3)pLysS AG' stationary phase/starvation inducible regulatory protein CspD YP_003036921.1 2855092 D 866768 CDS YP_003036922.1 253774091 8157497 complement(2855389..2857335) 1 NC_012947.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 2857335 8157497 ECBD_2715 Escherichia coli 'BL21-Gold(DE3)pLysS AG' macrolide transporter ATP-binding /permease YP_003036922.1 2855389 R 866768 CDS YP_003036923.1 253774092 8157498 complement(2857332..2858447) 1 NC_012947.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 2858447 8157498 ECBD_2716 Escherichia coli 'BL21-Gold(DE3)pLysS AG' macrolide transporter subunit MacA YP_003036923.1 2857332 R 866768 CDS YP_003036924.1 253774093 8157499 2858562..2859554 1 NC_012947.1 PFAM: protein of unknown function DUF535; KEGG: ssn:SSON_0864 enzyme; hypothetical protein 2859554 8157499 ECBD_2717 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036924.1 2858562 D 866768 CDS YP_003036925.1 253774094 8157500 complement(2859551..2861209) 1 NC_012947.1 KEGG: sfx:S0876 hypothetical protein; hypothetical protein 2861209 8157500 ECBD_2718 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036925.1 2859551 R 866768 CDS YP_003036926.1 253774095 8157501 2861634..2862329 1 NC_012947.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 2862329 8157501 ECBD_2719 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aquaporin Z YP_003036926.1 2861634 D 866768 CDS YP_003036927.1 253774096 8157502 2862824..2863723 1 NC_012947.1 PFAM: protein of unknown function DUF340 membrane; KEGG: sbo:SBO_0807 surface protein; hypothetical protein 2863723 8157502 ECBD_2720 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036927.1 2862824 D 866768 CDS YP_003036928.1 253774097 8157503 2863867..2865519 1 NC_012947.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2865519 8157503 ECBD_2721 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydroxylamine reductase YP_003036928.1 2863867 D 866768 CDS YP_003036929.1 253774098 8157586 2865531..2866499 1 NC_012947.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: sbc:SbBS512_E2459 NADH oxidoreductase hcr; HCP oxidoreductase, NADH-dependent 2866499 8157586 ECBD_2722 Escherichia coli 'BL21-Gold(DE3)pLysS AG' HCP oxidoreductase, NADH-dependent YP_003036929.1 2865531 D 866768 CDS YP_003036930.1 253774099 8157587 2866632..2868350 1 NC_012947.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 2868350 8157587 ECBD_2723 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvate dehydrogenase YP_003036930.1 2866632 D 866768 CDS YP_003036931.1 253774100 8157588 2868387..2869388 1 NC_012947.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase 2869388 8157588 ECBD_2724 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-threonine aldolase YP_003036931.1 2868387 D 866768 CDS YP_003036932.1 253774101 8157589 2869399..2870829 1 NC_012947.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: sbc:SbBS512_E2462 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2870829 8157589 ECBD_2725 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD-dependent epimerase/dehydratase YP_003036932.1 2869399 D 866768 CDS YP_003036933.1 253774102 8157590 2870892..2871941 1 NC_012947.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: ssn:SSON_0854 nucleotide di-P-sugar epimerase or dehydratase; NAD-dependent epimerase/dehydratase 2871941 8157590 ECBD_2726 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NAD-dependent epimerase/dehydratase YP_003036933.1 2870892 D 866768 CDS YP_003036934.1 253774103 8157591 complement(2871938..2872768) 1 NC_012947.1 KEGG: sdy:SDY_2396 regulator; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 2872768 8157591 ECBD_2727 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_003036934.1 2871938 R 866768 CDS YP_003036935.1 253774104 8157592 complement(2872765..2873088) 1 NC_012947.1 PFAM: protein of unknown function DUF74; KEGG: sdy:SDY_2397 hypothetical protein; hypothetical protein 2873088 8157592 ECBD_2728 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036935.1 2872765 R 866768 CDS YP_003036936.1 253774105 8157593 2873214..2873729 1 NC_012947.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein 2873729 8157593 ECBD_2729 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein YP_003036936.1 2873214 D 866768 CDS YP_003036937.1 253774106 8157594 2873947..2874675 1 NC_012947.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 2874675 artP 8157594 artP Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine transporter ATP-binding subunit YP_003036937.1 2873947 D 866768 CDS YP_003036938.1 253774107 8157595 2874693..2875424 1 NC_012947.1 TIGRFAM: cationic amino acid ABC transporter periplasmic binding protein; KEGG: ssn:SSON_0848 arginine 3rd transporter periplasmic binding protein; cationic amino acid ABC transporter periplasmic binding protein 2875424 8157595 ECBD_2731 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cationic amino acid ABC transporter periplasmic binding protein YP_003036938.1 2874693 D 866768 CDS YP_003036939.1 253774108 8157596 2875431..2876147 1 NC_012947.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 2876147 8157596 ECBD_2732 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine transporter permease subunit ArtQ YP_003036939.1 2875431 D 866768 CDS YP_003036940.1 253774109 8157597 2876147..2876815 1 NC_012947.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 2876815 artM 8157597 artM Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine transporter permease subunit ArtM YP_003036940.1 2876147 D 866768 CDS YP_003036941.1 253774110 8157598 2877106..2877837 1 NC_012947.1 TIGRFAM: cationic amino acid ABC transporter periplasmic binding protein; KEGG: sbo:SBO_0794 arginine 3rd transporter periplasmic binding protein; cationic amino acid ABC transporter periplasmic binding protein 2877837 8157598 ECBD_2734 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cationic amino acid ABC transporter periplasmic binding protein YP_003036941.1 2877106 D 866768 CDS YP_003036942.1 253774111 8157599 complement(2878036..2879163) 1 NC_012947.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 2879163 rumB 8157599 rumB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA methyluridine methyltransferase YP_003036942.1 2878036 R 866768 CDS YP_003036943.1 253774112 8157600 complement(2879204..2879692) 1 NC_012947.1 KEGG: sdy:SDY_0737 hypothetical protein; hypothetical protein 2879692 8157600 ECBD_2736 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036943.1 2879204 R 866768 CDS YP_003036944.1 253774113 8157601 complement(2879752..2880597) 1 NC_012947.1 KEGG: sdy:SDY_0738 putrescine transporter subunit: membrane component of ABC superfamily; putrescine transporter subunit: membrane component of ABC superfamily 2880597 8157601 ECBD_2737 Escherichia coli 'BL21-Gold(DE3)pLysS AG' putrescine transporter subunit: membrane component of ABC superfamily YP_003036944.1 2879752 R 866768 CDS YP_003036945.1 253774114 8157602 complement(2880594..2881547) 1 NC_012947.1 KEGG: efe:EFER_0999 putrescine transporter subunit: membrane component of ABC superfamily; putrescine transporter subunit: membrane component of ABC superfamily 2881547 8157602 ECBD_2738 Escherichia coli 'BL21-Gold(DE3)pLysS AG' putrescine transporter subunit: membrane component of ABC superfamily YP_003036945.1 2880594 R 866768 CDS YP_003036946.1 253774115 8157603 complement(2881557..2882690) 1 NC_012947.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine transporter ATP-binding subunit 2882690 potG 8157603 potG Escherichia coli 'BL21-Gold(DE3)pLysS AG' putrescine transporter ATP-binding subunit YP_003036946.1 2881557 R 866768 CDS YP_003036947.1 253774116 8157604 complement(2882785..2883897) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 1; KEGG: sbc:SbBS512_E2477 putrescine ABC transporter periplasmic putrescine-binding protein; putrescine transporter subunit: periplasmic-binding component of ABC superfamily 2883897 8157604 ECBD_2740 Escherichia coli 'BL21-Gold(DE3)pLysS AG' putrescine transporter subunit: periplasmic-binding component of ABC superfamily YP_003036947.1 2882785 R 866768 CDS YP_003036948.1 253774117 8157605 complement(2884248..2884724) 1 NC_012947.1 KEGG: ssn:SSON_0838 sensory transduction regulator; sensory transduction regulator 2884724 8157605 ECBD_2741 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensory transduction regulator YP_003036948.1 2884248 R 866768 CDS YP_003036949.1 253774118 8157606 complement(2884812..2885714) 1 NC_012947.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 2885714 8157606 ECBD_2742 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosomal protein S6 modification protein YP_003036949.1 2884812 R 866768 CDS YP_003036950.1 253774119 8157607 complement(2885775..2886497) 1 NC_012947.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 2886497 8157607 ECBD_2743 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitroreductase A YP_003036950.1 2885775 R 866768 CDS YP_003036951.1 253774120 8157608 complement(2886481..2886768) 1 NC_012947.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 2886768 8157608 ECBD_2744 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036951.1 2886481 R 866768 CDS YP_003036952.1 253774121 8157609 2886928..2887185 1 NC_012947.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 2887185 grxA 8157609 grxA Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutaredoxin YP_003036952.1 2886928 D 866768 CDS YP_003036953.1 253774122 8157610 complement(2887215..2887592) 1 NC_012947.1 KEGG: ssn:SSON_0833 hypothetical protein; hypothetical protein 2887592 8157610 ECBD_2746 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036953.1 2887215 R 866768 CDS YP_003036954.1 253774123 8157611 2887862..2889547 1 NC_012947.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; TrkA-C domain protein; KEGG: sbc:SbBS512_E2485 transporter; hypothetical protein 2889547 8157611 ECBD_2747 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036954.1 2887862 D 866768 CDS YP_003036955.1 253774124 8157612 complement(2889783..2890001) 1 NC_012947.1 PFAM: transcriptional activator Ogr/delta; KEGG: sbc:SbBS512_E2486 phage transcriptional activator, Ogr/delta; transcriptional activator Ogr/delta 2890001 8157612 ECBD_2748 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional activator Ogr/delta YP_003036955.1 2889783 R 866768 CDS YP_003036956.1 253774125 8157614 complement(2890457..2890732) 1 NC_012947.1 PFAM: Resolvase domain; KEGG: stt:t2667 DNA-invertase; resolvase 2890732 8157614 ECBD_2750 Escherichia coli 'BL21-Gold(DE3)pLysS AG' resolvase YP_003036956.1 2890457 R 866768 CDS YP_003036957.1 253774126 8157615 2890760..2891302 1 NC_012947.1 PFAM: Tail Collar domain protein; KEGG: stt:t1351 bacteriophage tail fiber protein; Tail Collar domain protein 2891302 8157615 ECBD_2751 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Tail Collar domain protein YP_003036957.1 2890760 D 866768 CDS YP_003036958.1 253774127 8157616 2891302..2891904 1 NC_012947.1 PFAM: tail assembly chaperone gp38; KEGG: stt:t1349 bacteriophage tail fiber assembly protein; tail assembly chaperone gp38 2891904 8157616 ECBD_2752 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tail assembly chaperone gp38 YP_003036958.1 2891302 D 866768 CDS YP_003036959.1 253774128 8157617 complement(2891876..2892313) 1 NC_012947.1 PFAM: tail assembly chaperone gp38; KEGG: stt:t3435 hypothetical protein; tail assembly chaperone gp38 2892313 8157617 ECBD_2753 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tail assembly chaperone gp38 YP_003036959.1 2891876 R 866768 CDS YP_003036960.1 253774129 8157618 complement(2892315..2893937) 1 NC_012947.1 KEGG: elf:LF82_p389 variable tail fibre protein; phage-like tail fiber protein 2893937 8157618 ECBD_2754 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage-like tail fiber protein YP_003036960.1 2892315 R 866768 CDS YP_003036961.1 253774130 8157619 complement(2893934..2894539) 1 NC_012947.1 TIGRFAM: phage tail protein I; KEGG: elf:LF82_p390 phage tail protein; phage tail protein I 2894539 8157619 ECBD_2755 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage tail protein I YP_003036961.1 2893934 R 866768 CDS YP_003036962.1 253774131 8157620 complement(2894532..2895440) 1 NC_012947.1 PFAM: Baseplate J family protein; KEGG: elf:LF82_p391 phage baseplate assembly protein; Baseplate J family protein 2895440 8157620 ECBD_2756 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Baseplate J family protein YP_003036962.1 2894532 R 866768 CDS YP_003036963.1 253774132 8157621 complement(2895427..2895786) 1 NC_012947.1 PFAM: GPW/gp25 family protein; KEGG: elf:LF82_p392 phage baseplate assembly protein; GPW/gp25 family protein 2895786 8157621 ECBD_2757 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GPW/gp25 family protein YP_003036963.1 2895427 R 866768 CDS YP_003036964.1 253774133 8157622 complement(2895783..2896361) 1 NC_012947.1 TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: stt:t3429 phage baseplate assembly protein; phage baseplate assembly protein V 2896361 8157622 ECBD_2758 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage baseplate assembly protein V YP_003036964.1 2895783 R 866768 CDS YP_003036965.1 253774134 8157623 2896465..2897271 1 NC_012947.1 KEGG: esa:ESA_02491 hypothetical protein; hypothetical protein 2897271 8157623 ECBD_2759 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036965.1 2896465 D 866768 CDS YP_003036966.1 253774135 8157624 complement(2897213..2897659) 1 NC_012947.1 TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: stt:t3428 phage tail protein; phage virion morphogenesis protein 2897659 8157624 ECBD_2760 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage virion morphogenesis protein YP_003036966.1 2897213 R 866768 CDS YP_003036967.1 253774136 8157625 complement(2897652..2898083) 1 NC_012947.1 PFAM: P2 phage tail completion R family protein; KEGG: sed:SeD_A3040 phage tail completion protein R; P2 phage tail completion R family protein 2898083 8157625 ECBD_2761 Escherichia coli 'BL21-Gold(DE3)pLysS AG' P2 phage tail completion R family protein YP_003036967.1 2897652 R 866768 CDS YP_003036968.1 253774137 8157626 complement(2898179..2898607) 1 NC_012947.1 KEGG: elf:LF82_p396 regulatory protein; regulatory protein 2898607 8157626 ECBD_2762 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulatory protein YP_003036968.1 2898179 R 866768 CDS YP_003036969.1 253774138 8157627 complement(2898744..2899496) 1 NC_012947.1 PFAM: capsid scaffolding; KEGG: sbo:SBO_0759 capsid scaffolding protein; capsid scaffolding 2899496 8157627 ECBD_2763 Escherichia coli 'BL21-Gold(DE3)pLysS AG' capsid scaffolding YP_003036969.1 2898744 R 866768 CDS YP_003036970.1 253774139 8157628 2899639..2901405 1 NC_012947.1 PFAM: protein of unknown function DUF264; terminase ATPase; KEGG: stt:t3417 terminase, ATPase; hypothetical protein 2901405 8157628 ECBD_2764 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036970.1 2899639 D 866768 CDS YP_003036971.1 253774140 8157629 2901405..2902430 1 NC_012947.1 TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; KEGG: stt:t3416 capsid portal protein; phage portal protein, PBSX family 2902430 8157629 ECBD_2765 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage portal protein, PBSX family YP_003036971.1 2901405 D 866768 CDS YP_003036972.1 253774141 8157630 complement(2902448..2903410) 1 NC_012947.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: har:HEAR0006 hypothetical protein; RNA-directed DNA polymerase 2903410 8157630 ECBD_2766 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA-directed DNA polymerase YP_003036972.1 2902448 R 866768 CDS YP_003036973.1 253774142 8157631 complement(2903573..2904496) 1 NC_012947.1 KEGG: har:HEAR0007 hypothetical protein; hypothetical protein 2904496 8157631 ECBD_2767 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036973.1 2903573 R 866768 CDS YP_003036974.1 253774143 8157632 2904969..2905304 1 NC_012947.1 hypothetical protein 2905304 8157632 ECBD_2768 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036974.1 2904969 D 866768 CDS YP_003036975.1 253774144 8157633 complement(2905497..2905730) 1 NC_012947.1 PFAM: DinI family protein; KEGG: stm:STM2727 hypothetical protein; DinI family protein 2905730 8157633 ECBD_2769 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DinI family protein YP_003036975.1 2905497 R 866768 CDS YP_003036976.1 253774145 8157634 complement(2905741..2905929) 1 NC_012947.1 KEGG: stt:t3411 hypothetical protein; hypothetical protein 2905929 8157634 ECBD_2770 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036976.1 2905741 R 866768 CDS YP_003036977.1 253774146 8157635 complement(2906082..2907527) 1 NC_012947.1 PFAM: regulatory CII family protein; replication gene A; KEGG: elf:LF82_p407 replication protein for prophage; regulatory CII family protein 2907527 8157635 ECBD_2771 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulatory CII family protein YP_003036977.1 2906082 R 866768 CDS YP_003036978.1 253774147 8157636 complement(2907560..2907781) 1 NC_012947.1 KEGG: sbo:SBO_0749 hypothetical protein; hypothetical protein 2907781 8157636 ECBD_2772 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036978.1 2907560 R 866768 CDS YP_003036979.1 253774148 8157637 2907907..2908476 1 NC_012947.1 PFAM: CI repressor; KEGG: sbo:SBO_0748 repressor protein; CI repressor 2908476 8157637 ECBD_2773 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CI repressor YP_003036979.1 2907907 D 866768 CDS YP_003036980.1 253774149 8157638 2908492..2908683 1 NC_012947.1 KEGG: sdy:SDY_1763 hypothetical protein; hypothetical protein 2908683 8157638 ECBD_2774 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036980.1 2908492 D 866768 CDS YP_003036981.1 253774150 8157639 2908870..2909886 1 NC_012947.1 PFAM: integrase; KEGG: stt:t3400 bacteriophage integrase; integrase 2909886 8157639 ECBD_2775 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integrase YP_003036981.1 2908870 D 866768 CDS YP_003036982.1 253774151 8157640 2909995..2910327 1 NC_012947.1 KEGG: stt:t3767 hypothetical protein; hypothetical protein 2910327 8157640 ECBD_2776 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036982.1 2909995 D 866768 CDS YP_003036983.1 253774152 8157641 complement(2910507..2911043) 1 NC_012947.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E2499 TetR family transcriptional regulator; TetR family transcriptional regulator 2911043 8157641 ECBD_2777 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TetR family transcriptional regulator YP_003036983.1 2910507 R 866768 CDS YP_003036984.1 253774153 8157642 2911127..2912335 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: elf:LF82_2659 inner membrane protein YbjJ; major facilitator superfamily MFS_1 2912335 8157642 ECBD_2778 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003036984.1 2911127 D 866768 CDS YP_003036985.1 253774154 8157643 2912335..2913150 1 NC_012947.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; KEGG: sfv:SFV_0829 hypothetical protein; Cof-like hydrolase 2913150 8157643 ECBD_2779 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Cof-like hydrolase YP_003036985.1 2912335 D 866768 CDS YP_003036986.1 253774155 8157644 2913242..2913520 1 NC_012947.1 KEGG: sfv:SFV_0828 hypothetical protein; hypothetical protein 2913520 8157644 ECBD_2780 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003036986.1 2913242 D 866768 CDS YP_003036987.1 253774156 8157645 complement(2913561..2914793) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily MFS_1 2914793 8157645 ECBD_2781 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003036987.1 2913561 R 866768 CDS YP_003036988.1 253774157 8157646 2915078..2915674 1 NC_012947.1 KEGG: ssn:SSON_0826 undecaprenyl pyrophosphate phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; UDP pyrophosphate phosphatase 2915674 8157646 ECBD_2782 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP pyrophosphate phosphatase YP_003036988.1 2915078 D 866768 CDS YP_003036989.1 253774158 8157647 2915732..2916490 1 NC_012947.1 PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 2916490 8157647 ECBD_2783 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DeoR family transcriptional regulator YP_003036989.1 2915732 D 866768 CDS YP_003036990.1 253774159 8157648 complement(2916537..2917739) 1 NC_012947.1 penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase fraction C 2917739 8157648 ECBD_2784 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanyl-D-alanine carboxypeptidase fraction C YP_003036990.1 2916537 R 866768 CDS YP_003036991.1 253774160 8157649 2917986..2918612 1 NC_012947.1 PFAM: glutathione S-transferase domain; KEGG: sfx:S0831 transferase; glutathione S-transferase domain protein 2918612 8157649 ECBD_2785 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione S-transferase domain protein YP_003036991.1 2917986 D 866768 CDS YP_003036992.1 253774161 8157650 complement(2918609..2919724) 1 NC_012947.1 PFAM: glucose sorbosone dehydrogenase; KEGG: sbo:SBO_0733 dehydrogenase; glucose sorbosone dehydrogenase 2919724 8157650 ECBD_2786 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucose sorbosone dehydrogenase YP_003036992.1 2918609 R 866768 CDS YP_003036993.1 253774162 8157651 complement(2919835..2920218) 1 NC_012947.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssR 2920218 bssR 8157651 bssR Escherichia coli 'BL21-Gold(DE3)pLysS AG' biofilm formation regulatory protein BssR YP_003036993.1 2919835 R 866768 CDS YP_003036994.1 253774163 8157652 2920431..2921756 1 NC_012947.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 2921756 rimO 8157652 rimO Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosomal protein S12 methylthiotransferase YP_003036994.1 2920431 D 866768 CDS YP_003036995.1 253774164 8157653 complement(2921803..2923131) 1 NC_012947.1 KEGG: sbo:SBO_0726 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2923131 8157653 ECBD_2789 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase YP_003036995.1 2921803 R 866768 CDS YP_003036996.1 253774165 8157655 complement(2925665..2926576) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sbc:SbBS512_E2516 glutathione ABC transporter permease GsiD; binding-protein-dependent transporters inner membrane component 2926576 8157655 ECBD_2791 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036996.1 2925665 R 866768 CDS YP_003036997.1 253774166 8157656 complement(2926579..2927499) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sdy:SDY_0756 transporter permease protein; binding-protein-dependent transporters inner membrane component 2927499 8157656 ECBD_2792 Escherichia coli 'BL21-Gold(DE3)pLysS AG' binding-protein-dependent transporters inner membrane component YP_003036997.1 2926579 R 866768 CDS YP_003036998.1 253774167 8157657 complement(2927517..2929055) 1 NC_012947.1 PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_0812 transporter; extracellular solute-binding protein family 5 2929055 8157657 ECBD_2793 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 5 YP_003036998.1 2927517 R 866768 CDS YP_003036999.1 253774168 8157658 complement(2929075..2930946) 1 NC_012947.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 2930946 8157658 ECBD_2794 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione transporter ATP-binding protein YP_003036999.1 2929075 R 866768 CDS YP_003037000.1 253774169 8157659 complement(2930933..2931898) 1 NC_012947.1 PFAM: peptidase T2 asparaginase 2; KEGG: ssn:SSON_0810 L-asparaginase; L-asparaginase 2931898 8157659 ECBD_2795 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-asparaginase YP_003037000.1 2930933 R 866768 CDS YP_003037001.1 253774170 8157660 2932102..2933337 1 NC_012947.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 2933337 8157660 ECBD_2796 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin biosynthesis protein MoeA YP_003037001.1 2932102 D 866768 CDS YP_003037002.1 253774171 8157661 2933337..2934086 1 NC_012947.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 2934086 8157661 ECBD_2797 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin biosynthesis protein MoeB YP_003037002.1 2933337 D 866768 CDS YP_003037003.1 253774172 8157662 complement(2934162..2934824) 1 NC_012947.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 2934824 8157662 ECBD_2798 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-6-phosphate aldolase YP_003037003.1 2934162 R 866768 CDS YP_003037004.1 253774173 8157663 2934955..2935854 1 NC_012947.1 KEGG: sfv:SFV_0807 pyruvate formate-lyase 2 activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: radical SAM protein; glycyl-radical enzyme activating protein family 2935854 8157663 ECBD_2799 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycyl-radical enzyme activating protein family YP_003037004.1 2934955 D 866768 CDS YP_003037005.1 253774174 8157504 2935860..2938292 1 NC_012947.1 KEGG: elf:LF82_2650 formate acetyltransferase 3; TIGRFAM: pyruvate formate-lyase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; pyruvate formate-lyase 2938292 8157504 ECBD_2800 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvate formate-lyase YP_003037005.1 2935860 D 866768 CDS YP_003037006.1 253774175 8158405 2938438..2939253 1 NC_012947.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase; KEGG: sfv:SFV_0805 hypothetical protein; Cof-like hydrolase 2939253 8158405 ECBD_2801 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Cof-like hydrolase YP_003037006.1 2938438 D 866768 CDS YP_003037007.1 253774176 8158324 2939405..2940670 1 NC_012947.1 PFAM: protein of unknown function DUF1479; KEGG: sbo:SBO_0711 hypothetical protein; hypothetical protein 2940670 8158324 ECBD_2802 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037007.1 2939405 D 866768 CDS YP_003037008.1 253774177 8158325 complement(2940838..2942430) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 2942430 8158325 ECBD_2803 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003037008.1 2940838 R 866768 CDS YP_003037009.1 253774178 8158326 2942649..2943569 1 NC_012947.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_0777 hypothetical protein; hypothetical protein 2943569 8158326 ECBD_2804 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037009.1 2942649 D 866768 CDS YP_003037010.1 253774179 8158327 complement(2943628..2944746) 1 NC_012947.1 PFAM: citrate transporter; KEGG: ssn:SSON_0797 hypothetical protein; citrate transporter 2944746 8158327 ECBD_2805 Escherichia coli 'BL21-Gold(DE3)pLysS AG' citrate transporter YP_003037010.1 2943628 R 866768 CDS YP_003037011.1 253774180 8158328 complement(2944743..2945210) 1 NC_012947.1 transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 2945210 8158328 ECBD_2806 Escherichia coli 'BL21-Gold(DE3)pLysS AG' manganese transport regulator MntR YP_003037011.1 2944743 R 866768 CDS YP_003037012.1 253774181 8158329 2945396..2945524 1 NC_012947.1 KEGG: sbc:SbBS512_E2532 hypothetical protein; hypothetical protein 2945524 8158329 ECBD_2807 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037012.1 2945396 D 866768 CDS YP_003037013.1 253774182 8158330 2945796..2947379 1 NC_012947.1 PFAM: sulfatase; KEGG: sbc:SbBS512_E2533 sulfatase family protein; sulfatase 2947379 8158330 ECBD_2808 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfatase YP_003037013.1 2945796 D 866768 CDS YP_003037014.1 253774183 8158331 complement(2947428..2947943) 1 NC_012947.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 2947943 ompX 8158331 ompX Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane protein X YP_003037014.1 2947428 R 866768 CDS YP_003037015.1 253774184 8158332 2948296..2949183 1 NC_012947.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbc:SbBS512_E2535 threonine/homoserine efflux transporter RhtA; threonine and homoserine efflux system 2949183 8158332 ECBD_2810 Escherichia coli 'BL21-Gold(DE3)pLysS AG' threonine and homoserine efflux system YP_003037015.1 2948296 D 866768 CDS YP_003037016.1 253774185 8158333 2949482..2949985 1 NC_012947.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 2949985 8158333 ECBD_2811 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA starvation/stationary phase protection protein Dps YP_003037016.1 2949482 D 866768 CDS YP_003037017.1 253774186 8158334 2950389..2951135 1 NC_012947.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 2951135 glnH 8158334 glnH Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamine ABC transporter periplasmic protein YP_003037017.1 2950389 D 866768 CDS YP_003037018.1 253774187 8158335 2951274..2951933 1 NC_012947.1 similar to permease of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 2951933 glnP 8158335 glnP Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamine ABC transporter permease YP_003037018.1 2951274 D 866768 CDS YP_003037019.1 253774188 8158336 2951930..2952652 1 NC_012947.1 similar to ATP-binding component of ABC transporters; ABC transporter ATP-binding protein 2952652 glnQ 8158336 glnQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATP-binding protein YP_003037019.1 2951930 D 866768 CDS YP_003037020.1 253774189 8158337 2952913..2955138 1 NC_012947.1 PFAM: MscS Mechanosensitive ion channel; KEGG: efe:EFER_2300 hypothetical protein; hypothetical protein 2955138 8158337 ECBD_2815 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037020.1 2952913 D 866768 CDS YP_003037021.1 253774190 8158338 complement(2955135..2956061) 1 NC_012947.1 PFAM: protein of unknown function DUF890; KEGG: sbc:SbBS512_E2543 hypothetical protein; SAM-dependent methyltransferase 2956061 8158338 ECBD_2816 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SAM-dependent methyltransferase YP_003037021.1 2955135 R 866768 CDS YP_003037022.1 253774191 8158339 2956337..2956597 1 NC_012947.1 PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E2544 hypothetical protein; hypothetical protein 2956597 8158339 ECBD_2817 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037022.1 2956337 D 866768 CDS YP_003037023.1 253774192 8158340 2956862..2959144 1 NC_012947.1 Fiu; YbiL; porin involved in the uptake of iron complexed with catecholate siderophores (e.g. dihydroxybenzoylserine, dihydroxybenzoate) and beta lactam agents; Fiu interacts with TonB which provides the energy required for transport across the outer membrane; acts as a receptor for iron-siderophores and microcins E492, M, and H47; outer membrane protein; catecholate siderophore receptor Fiu 2959144 8158340 ECBD_2818 Escherichia coli 'BL21-Gold(DE3)pLysS AG' catecholate siderophore receptor Fiu YP_003037023.1 2956862 D 866768 CDS YP_003037024.1 253774193 8158341 2959186..2959863 1 NC_012947.1 PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha; hydroxylase 2959863 8158341 ECBD_2819 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydroxylase YP_003037024.1 2959186 D 866768 CDS YP_003037025.1 253774194 8158342 2959937..2960203 1 NC_012947.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: ssn:SSON_0782 hypothetical protein; hypothetical protein 2960203 8158342 ECBD_2820 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037025.1 2959937 D 866768 CDS YP_003037026.1 253774195 8158343 2960468..2960728 1 NC_012947.1 PFAM: protein of unknown function DUF1471; KEGG: sfv:SFV_0785 hypothetical protein; hypothetical protein 2960728 8158343 ECBD_2821 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037026.1 2960468 D 866768 CDS YP_003037027.1 253774196 8158344 complement(2960957..2962042) 1 NC_012947.1 PFAM: malate/L-lactate dehydrogenase; KEGG: ssn:SSON_0780 dehydrogenase; hypothetical protein 2962042 8158344 ECBD_2822 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037027.1 2960957 R 866768 CDS YP_003037028.1 253774197 8158345 complement(2962183..2963145) 1 NC_012947.1 PFAM: glycosyl transferase, family 3-like; KEGG: sbo:SBO_0688 hypothetical protein; glycosyl transferase 2963145 8158345 ECBD_2823 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycosyl transferase YP_003037028.1 2962183 R 866768 CDS YP_003037029.1 253774198 8158346 complement(2963173..2965458) 1 NC_012947.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 2965458 dinG 8158346 dinG Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent DNA helicase DinG YP_003037029.1 2963173 R 866768 CDS YP_003037030.1 253774199 8158347 2965476..2965925 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: efe:EFER_2310 hypothetical protein; hypothetical protein 2965925 8158347 ECBD_2825 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037030.1 2965476 D 866768 CDS YP_003037031.1 253774200 8158348 complement(2966157..2967521) 1 NC_012947.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 2967521 8158348 ECBD_2826 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent RNA helicase RhlE YP_003037031.1 2966157 R 866768 CDS YP_003037032.1 253774201 8158349 2967750..2968421 1 NC_012947.1 PFAM: TetR family transcriptional regulator ; regulatory protein TetR; KEGG: sfv:SFV_0779 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 2968421 8158349 ECBD_2827 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003037032.1 2967750 D 866768 CDS YP_003037033.1 253774202 8158350 2968424..2969419 1 NC_012947.1 PFAM: secretion protein HlyD; KEGG: sfv:SFV_0778 hypothetical protein; hypothetical protein 2969419 8158350 ECBD_2828 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037033.1 2968424 D 866768 CDS YP_003037034.1 253774203 8158351 2969412..2971148 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: hypothetical protein; ABC transporter 2971148 8158351 ECBD_2829 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003037034.1 2969412 D 866768 CDS YP_003037035.1 253774204 8158352 2971141..2972274 1 NC_012947.1 PFAM: ABC transporter; KEGG: ssn:SSON_0772 hypothetical protein; ABC transporter 2972274 8158352 ECBD_2830 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003037035.1 2971141 D 866768 CDS YP_003037036.1 253774205 8158353 2972285..2973391 1 NC_012947.1 PFAM: ABC transporter; KEGG: ssn:SSON_0771 hypothetical protein; ABC transporter 2973391 8158353 ECBD_2831 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003037036.1 2972285 D 866768 CDS YP_003037037.1 253774206 8158354 complement(2973353..2973763) 1 NC_012947.1 KEGG: sbc:SbBS512_E2560 hypothetical protein; hypothetical protein 2973763 8158354 ECBD_2832 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037037.1 2973353 R 866768 CDS YP_003037038.1 253774207 8158355 2973896..2974657 1 NC_012947.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ssn:SSON_0769 hypothetical protein; endonuclease/exonuclease/phosphatase 2974657 8158355 ECBD_2833 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endonuclease/exonuclease/phosphatase YP_003037038.1 2973896 D 866768 CDS YP_003037039.1 253774208 8158356 2974654..2975895 1 NC_012947.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: elf:LF82_2631 cardiolipin synthetase YbhO; cardiolipin synthase 2 2975895 8158356 ECBD_2834 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cardiolipin synthase 2 YP_003037039.1 2974654 D 866768 CDS YP_003037040.1 253774209 8158357 2975895..2976851 1 NC_012947.1 hypothetical protein 2976851 8158357 ECBD_2835 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037040.1 2975895 D 866768 CDS YP_003037041.1 253774210 8158358 complement(2976887..2977600) 1 NC_012947.1 PFAM: protein of unknown function UPF0005; KEGG: sfv:SFV_0770 hypothetical protein; hypothetical protein 2977600 8158358 ECBD_2836 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037041.1 2976887 R 866768 CDS YP_003037042.1 253774211 8158359 complement(2977805..2978509) 1 NC_012947.1 PFAM: protein of unknown function UPF0005; KEGG: ssn:SSON_0765 hypothetical protein; hypothetical protein 2978509 8158359 ECBD_2837 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037042.1 2977805 R 866768 CDS YP_003037043.1 253774212 8158360 complement(2978645..2979097) 1 NC_012947.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 2979097 moaE 8158360 moaE Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_003037043.1 2978645 R 866768 CDS YP_003037044.1 253774213 8158361 complement(2979099..2979344) 1 NC_012947.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 2979344 moaD 8158361 moaD Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin synthase small subunit YP_003037044.1 2979099 R 866768 CDS YP_003037045.1 253774214 8158362 complement(2979337..2979822) 1 NC_012947.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2979822 moaC 8158362 moaC Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdenum cofactor biosynthesis protein MoaC YP_003037045.1 2979337 R 866768 CDS YP_003037046.1 253774215 8158363 complement(2979825..2980337) 1 NC_012947.1 TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis protein; PFAM: molybdopterin binding domain; KEGG: ssn:SSON_0761 molybdopterin biosynthesis, protein B; molybdenum cofactor biosynthesis protein B 2980337 8158363 ECBD_2841 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdenum cofactor biosynthesis protein B YP_003037046.1 2979825 R 866768 CDS YP_003037047.1 253774216 8158364 complement(2980359..2981348) 1 NC_012947.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 2981348 moaA 8158364 moaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdenum cofactor biosynthesis protein A YP_003037047.1 2980359 R 866768 CDS YP_003037048.1 253774217 8158365 2981745..2982653 1 NC_012947.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: ssn:SSON_0759 structural protein; hypothetical protein 2982653 8158365 ECBD_2843 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037048.1 2981745 D 866768 CDS YP_003037049.1 253774218 8158366 complement(2982845..2984866) 1 NC_012947.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2984866 8158366 ECBD_2844 Escherichia coli 'BL21-Gold(DE3)pLysS AG' excinuclease ABC subunit B YP_003037049.1 2982845 R 866768 CDS YP_003037050.1 253774219 8158367 complement(2985445..2986122) 1 NC_012947.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 2986122 bioD 8158367 bioD Escherichia coli 'BL21-Gold(DE3)pLysS AG' dithiobiotin synthetase YP_003037050.1 2985445 R 866768 CDS YP_003037051.1 253774220 8158368 complement(2986115..2986870) 1 NC_012947.1 methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 2986870 8158368 ECBD_2846 Escherichia coli 'BL21-Gold(DE3)pLysS AG' biotin biosynthesis protein BioC YP_003037051.1 2986115 R 866768 CDS YP_003037052.1 253774221 8158369 complement(2986857..2988011) 1 NC_012947.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 2988011 8158369 ECBD_2847 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 8-amino-7-oxononanoate synthase YP_003037052.1 2986857 R 866768 CDS YP_003037053.1 253774222 8158370 complement(2988008..2989048) 1 NC_012947.1 KEGG: ssn:SSON_0754 biotin synthesis; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2989048 8158370 ECBD_2848 Escherichia coli 'BL21-Gold(DE3)pLysS AG' biotin synthase YP_003037053.1 2988008 R 866768 CDS YP_003037054.1 253774223 8158371 2989135..2990424 1 NC_012947.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 2990424 8158371 ECBD_2849 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenosylmethionine--8-amino-7-oxononanoate transaminase YP_003037054.1 2989135 D 866768 CDS YP_003037055.1 253774224 8158372 2990483..2990959 1 NC_012947.1 YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein 2990959 8158372 ECBD_2850 Escherichia coli 'BL21-Gold(DE3)pLysS AG' kinase inhibitor protein YP_003037055.1 2990483 D 866768 CDS YP_003037056.1 253774225 8158373 complement(2991255..2991416) 1 NC_012947.1 hypothetical protein 2991416 8158373 ECBD_2851 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037056.1 2991255 R 866768 CDS YP_003037057.1 253774226 8158376 complement(2994325..2994945) 1 NC_012947.1 PFAM: virulence-related outer membrane protein; KEGG: sbo:SBO_1623 membrane protein precursor; virulence-related outer membrane protein 2994945 8158376 ECBD_2854 Escherichia coli 'BL21-Gold(DE3)pLysS AG' virulence-related outer membrane protein YP_003037057.1 2994325 R 866768 CDS YP_003037058.1 253774227 8158377 complement(2995007..2998405) 1 NC_012947.1 PFAM: protein of unknown function DUF1983; Fibronectin type III domain protein; KEGG: elf:LF82_p179 host specificity protein; hypothetical protein 2998405 8158377 ECBD_2855 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037058.1 2995007 R 866768 CDS YP_003037059.1 253774228 8158378 complement(2998466..2999038) 1 NC_012947.1 PFAM: lambda tail assembly I; KEGG: hypothetical protein; lambda tail assembly I 2999038 8158378 ECBD_2856 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lambda tail assembly I YP_003037059.1 2998466 R 866768 CDS YP_003037060.1 253774229 8158379 complement(2999035..2999778) 1 NC_012947.1 PFAM: NLP/P60 protein; SMART: Mov34/MPN/PAD-1 family protein; NLP/P60 protein 2999778 8158379 ECBD_2857 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NLP/P60 protein YP_003037060.1 2999035 R 866768 CDS YP_003037061.1 253774230 8158380 complement(2999784..3000482) 1 NC_012947.1 TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: elf:LF82_p176 minor tail protein; phage minor tail protein L 3000482 8158380 ECBD_2858 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage minor tail protein L YP_003037061.1 2999784 R 866768 CDS YP_003037062.1 253774231 8158381 complement(3000482..3000811) 1 NC_012947.1 PFAM: minor tail family protein; KEGG: elf:LF82_p175 minor tail protein; minor tail family protein 3000811 8158381 ECBD_2859 Escherichia coli 'BL21-Gold(DE3)pLysS AG' minor tail family protein YP_003037062.1 3000482 R 866768 CDS YP_003037063.1 253774232 8158382 complement(3000808..3003369) 1 NC_012947.1 TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure; KEGG: elf:LF82_p174 tail component of prophage; phage tail tape measure protein, lambda family 3003369 8158382 ECBD_2860 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage tail tape measure protein, lambda family YP_003037063.1 3000808 R 866768 CDS YP_003037064.1 253774233 8158383 complement(3003362..3003796) 1 NC_012947.1 TIGRFAM: phage tail assembly protein T; PFAM: Minor tail T family protein; KEGG: ssn:SSON_2418 tail component of prophage; phage tail assembly protein T 3003796 8158383 ECBD_2861 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage tail assembly protein T YP_003037064.1 3003362 R 866768 CDS YP_003037065.1 253774234 8158384 complement(3003778..3004200) 1 NC_012947.1 TIGRFAM: phage minor tail protein G; PFAM: minor tail protein G; KEGG: ssn:SSON_2419 tail component of prophage; phage minor tail protein G 3004200 8158384 ECBD_2862 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage minor tail protein G YP_003037065.1 3003778 R 866768 CDS YP_003037066.1 253774235 8158385 complement(3004216..3004956) 1 NC_012947.1 PFAM: hypothetical protein; SMART: Ig domain protein group 2 domain protein; KEGG: elf:LF82_p171 tail component of prophage; hypothetical protein 3004956 8158385 ECBD_2863 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037066.1 3004216 R 866768 CDS YP_003037067.1 253774236 8158386 complement(3004964..3005359) 1 NC_012947.1 PFAM: minor tail U; minor tail U 3005359 8158386 ECBD_2864 Escherichia coli 'BL21-Gold(DE3)pLysS AG' minor tail U YP_003037067.1 3004964 R 866768 CDS YP_003037068.1 253774237 8158387 complement(3005356..3005934) 1 NC_012947.1 PFAM: Prophage minor tail Z family protein; KEGG: ssn:SSON_2422 tail component of prophage; Prophage minor tail Z family protein 3005934 8158387 ECBD_2865 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Prophage minor tail Z family protein YP_003037068.1 3005356 R 866768 CDS YP_003037069.1 253774238 8158388 complement(3005946..3006299) 1 NC_012947.1 PFAM: head-tail attachment protein; KEGG: ssn:SSON_2423 head-tail joining protein of prophage; head-tail attachment protein 3006299 8158388 ECBD_2866 Escherichia coli 'BL21-Gold(DE3)pLysS AG' head-tail attachment protein YP_003037069.1 3005946 R 866768 CDS YP_003037070.1 253774239 8158389 complement(3006311..3006709) 1 NC_012947.1 KEGG: ssn:SSON_2424 DNA-packaging protein; DNA-packaging protein 3006709 8158389 ECBD_2867 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-packaging protein YP_003037070.1 3006311 R 866768 CDS YP_003037071.1 253774240 8158390 complement(3006751..3007776) 1 NC_012947.1 PFAM: major capsid protein E; KEGG: ssn:SSON_2425 major capsid protein; major capsid protein E 3007776 8158390 ECBD_2868 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major capsid protein E YP_003037071.1 3006751 R 866768 CDS YP_003037072.1 253774241 8158391 complement(3007832..3008164) 1 NC_012947.1 PFAM: lambda head decoration protein D HDPD; KEGG: ssn:SSON_2426 head decoration protein; lambda head decoration protein D HDPD 3008164 8158391 ECBD_2869 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lambda head decoration protein D HDPD YP_003037072.1 3007832 R 866768 CDS YP_003037073.1 253774242 8158392 complement(3008174..3009493) 1 NC_012947.1 PFAM: peptidase S49; peptidase S49 3009493 8158392 ECBD_2870 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase S49 YP_003037073.1 3008174 R 866768 CDS YP_003037074.1 253774243 8158393 complement(3009474..3011075) 1 NC_012947.1 TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: ssn:SSON_2428 capsid structural protein of prophage; phage portal protein, lambda family 3011075 8158393 ECBD_2871 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage portal protein, lambda family YP_003037074.1 3009474 R 866768 CDS YP_003037075.1 253774244 8158394 complement(3011072..3011278) 1 NC_012947.1 PFAM: Head-to-tail joining protein W gpW family protein; KEGG: ssn:SSON_2429 head-tail joining protein of prophage; Head-to-tail joining protein W gpW family protein 3011278 8158394 ECBD_2872 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Head-to-tail joining protein W gpW family protein YP_003037075.1 3011072 R 866768 CDS YP_003037076.1 253774245 8158395 complement(3011275..3013200) 1 NC_012947.1 PFAM: terminase GpA; KEGG: ssn:SSON_2430 DNA packaging protein of prophage; terminase GpA 3013200 8158395 ECBD_2873 Escherichia coli 'BL21-Gold(DE3)pLysS AG' terminase GpA YP_003037076.1 3011275 R 866768 CDS YP_003037077.1 253774246 8158396 complement(3013175..3013720) 1 NC_012947.1 PFAM: DNA packaging Nu1; KEGG: elf:LF82_1506 prophage QSR' DNA packaging protein NU1 homolog; DNA packaging Nu1 3013720 8158396 ECBD_2874 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA packaging Nu1 YP_003037077.1 3013175 R 866768 CDS YP_003037078.1 253774247 8158397 3014109..3014303 1 NC_012947.1 hypothetical protein 3014303 8158397 ECBD_2875 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037078.1 3014109 D 866768 CDS YP_003037079.1 253774248 8158398 complement(3014468..3014674) 1 NC_012947.1 KEGG: elf:LF82_2580 uncharacterized protein YbcW; hypothetical protein 3014674 8158398 ECBD_2876 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037079.1 3014468 R 866768 CDS YP_003037080.1 253774249 8158399 3014960..3015370 1 NC_012947.1 PFAM: protein of unknown function DUF1398; KEGG: elf:LF82_2579 uncharacterized protein YbcV; hypothetical protein 3015370 8158399 ECBD_2877 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037080.1 3014960 D 866768 CDS YP_003037081.1 253774250 8158400 3015660..3015953 1 NC_012947.1 PFAM: Bor family protein; KEGG: elf:LF82_0244 lipoprotein bor homolog from lambdoid prophage DLP12; Bor family protein 3015953 8158400 ECBD_2878 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Bor family protein YP_003037081.1 3015660 D 866768 CDS YP_003037082.1 253774251 8158401 complement(3015985..3016446) 1 NC_012947.1 PFAM: lysis protein; lysis protein 3016446 8158401 ECBD_2879 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysis protein YP_003037082.1 3015985 R 866768 CDS YP_003037083.1 253774252 8158402 complement(3016443..3016919) 1 NC_012947.1 PFAM: glycoside hydrolase family 24; KEGG: sec:SC0349 lysin; Lysozyme 3016919 8158402 ECBD_2880 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lysozyme YP_003037083.1 3016443 R 866768 CDS YP_003037084.1 253774253 8158403 complement(3016903..3017226) 1 NC_012947.1 TIGRFAM: phage holin, lambda family; PFAM: Holin phage lambda; KEGG: sfv:SFV_0278 cell lysis protein; phage holin, lambda family 3017226 8158403 ECBD_2881 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage holin, lambda family YP_003037084.1 3016903 R 866768 CDS YP_003037085.1 253774254 8158404 complement(3017597..3017791) 1 NC_012947.1 hypothetical protein 3017791 8158404 ECBD_2882 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037085.1 3017597 R 866768 CDS YP_003037086.1 253774255 8158156 complement(3017903..3018526) 1 NC_012947.1 PFAM: antitermination protein; KEGG: sfv:SFV_0277 antitermination protein; antitermination protein 3018526 8158156 ECBD_2883 Escherichia coli 'BL21-Gold(DE3)pLysS AG' antitermination protein YP_003037086.1 3017903 R 866768 CDS YP_003037087.1 253774256 8156861 complement(3018523..3019326) 1 NC_012947.1 PFAM: metallophosphoesterase; KEGG: efe:EFER_2055 serine/threonine-protein phosphatase; phosphoprotein phosphatase 3019326 8156861 ECBD_2884 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoprotein phosphatase YP_003037087.1 3018523 R 866768 CDS YP_003037088.1 253774257 8156862 complement(3019323..3020024) 1 NC_012947.1 PFAM: replication P family protein; KEGG: elf:LF82_p157 replication protein P of bacteriophage; replication P family protein 3020024 8156862 ECBD_2885 Escherichia coli 'BL21-Gold(DE3)pLysS AG' replication P family protein YP_003037088.1 3019323 R 866768 CDS YP_003037089.1 253774258 8156863 complement(3020021..3020920) 1 NC_012947.1 TIGRFAM: phage replication protein O; PFAM: replication protein O domain protein; phage replication protein O 3020920 8156863 ECBD_2886 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage replication protein O YP_003037089.1 3020021 R 866768 CDS YP_003037090.1 253774259 8156864 complement(3020953..3021252) 1 NC_012947.1 PFAM: CII family protein; KEGG: efe:EFER_2070 regulatory protein CII from phage origin; CII family protein 3021252 8156864 ECBD_2887 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CII family protein YP_003037090.1 3020953 R 866768 CDS YP_003037091.1 253774260 8156865 complement(3021368..3021553) 1 NC_012947.1 KEGG: elf:LF82_p108 Cro protein; Cro protein 3021553 8156865 ECBD_2888 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Cro protein YP_003037091.1 3021368 R 866768 CDS YP_003037092.1 253774261 8156866 3021634..3022284 1 NC_012947.1 PFAM: peptidase S24 and S26 domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: elf:LF82_p107 repressor protein; XRE family transcriptional regulator 3022284 8156866 ECBD_2889 Escherichia coli 'BL21-Gold(DE3)pLysS AG' XRE family transcriptional regulator YP_003037092.1 3021634 D 866768 CDS YP_003037093.1 253774262 8156867 3022599..3022898 1 NC_012947.1 KEGG: elf:LF82_p106 phage regulatory protein N; phage regulatory protein N 3022898 8156867 ECBD_2890 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage regulatory protein N YP_003037093.1 3022599 D 866768 CDS YP_003037094.1 253774263 8156868 3022977..3023177 1 NC_012947.1 KEGG: efe:EFER_2077 restriction inhibitor protein ral (antirestriction protein); restriction inhibitor protein ral (antirestriction protein) 3023177 8156868 ECBD_2891 Escherichia coli 'BL21-Gold(DE3)pLysS AG' restriction inhibitor protein ral (antirestriction protein) YP_003037094.1 3022977 D 866768 CDS YP_003037095.1 253774264 8156869 3023360..3023728 1 NC_012947.1 hypothetical protein 3023728 8156869 ECBD_2892 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037095.1 3023360 D 866768 CDS YP_003037096.1 253774265 8156870 3023801..3023965 1 NC_012947.1 PFAM: Lambda phage regulatory protein CIII; KEGG: sek:SSPA2258 hypothetical protein; Lambda phage regulatory protein CIII 3023965 8156870 ECBD_2893 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lambda phage regulatory protein CIII YP_003037096.1 3023801 D 866768 CDS YP_003037097.1 253774266 8156871 3023808..3024077 1 NC_012947.1 PFAM: lambda Kil; KEGG: ses:SARI_02674 hypothetical protein; lambda Kil 3024077 8156871 ECBD_2894 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lambda Kil YP_003037097.1 3023808 D 866768 CDS YP_003037098.1 253774267 8156872 3024032..3024448 1 NC_012947.1 PFAM: Host-nuclease inhibitor Gam; KEGG: efe:EFER_2726 host-nuclease inhibitor protein Gam of bacteriophage; Host-nuclease inhibitor Gam 3024448 8156872 ECBD_2895 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Host-nuclease inhibitor Gam YP_003037098.1 3024032 D 866768 CDS YP_003037099.1 253774268 8156873 3024454..3025239 1 NC_012947.1 TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: efe:EFER_2727 recombination protein bet from phage origin; phage recombination protein Bet 3025239 8156873 ECBD_2896 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage recombination protein Bet YP_003037099.1 3024454 D 866768 CDS YP_003037100.1 253774269 8156874 3025236..3025916 1 NC_012947.1 KEGG: efe:EFER_2728 exonuclease from phage origin; exodeoxyribonuclease (lambda-induced) 3025916 8156874 ECBD_2897 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exodeoxyribonuclease (lambda-induced) YP_003037100.1 3025236 D 866768 CDS YP_003037101.1 253774270 8156875 3025913..3026095 1 NC_012947.1 PFAM: protein of unknown function DUF1317; KEGG: elf:LF82_p147 hypothetical protein; hypothetical protein 3026095 8156875 ECBD_2898 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037101.1 3025913 D 866768 CDS YP_003037102.1 253774271 8156876 3026068..3026259 1 NC_012947.1 PFAM: protein of unknown function DUF1382; KEGG: elf:LF82_p146 hypothetical protein; hypothetical protein 3026259 8156876 ECBD_2899 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037102.1 3026068 D 866768 CDS YP_003037103.1 253774272 8156878 3026869..3027417 1 NC_012947.1 PFAM: protein of unknown function DUF550; hypothetical protein 3027417 8156878 ECBD_2901 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037103.1 3026869 D 866768 CDS YP_003037104.1 253774273 8156879 3027609..3027890 1 NC_012947.1 hypothetical protein 3027890 8156879 ECBD_2902 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037104.1 3027609 D 866768 CDS YP_003037105.1 253774274 8156880 3027979..3028146 1 NC_012947.1 KEGG: elf:LF82_p097 hypothetical protein; hypothetical protein 3028146 8156880 ECBD_2903 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037105.1 3027979 D 866768 CDS YP_003037106.1 253774275 8156881 3028186..3028404 1 NC_012947.1 PFAM: excisionase; KEGG: elf:LF82_p095 excisionase; excisionase 3028404 8156881 ECBD_2904 Escherichia coli 'BL21-Gold(DE3)pLysS AG' excisionase YP_003037106.1 3028186 D 866768 CDS YP_003037107.1 253774276 8156882 3028382..3029305 1 NC_012947.1 PFAM: lambda integrase ; integrase domain protein SAM domain protein; integrase; KEGG: sfv:SFV_2686 integrase; lambda integrase 3029305 8156882 ECBD_2905 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lambda integrase YP_003037107.1 3028382 D 866768 CDS YP_003037108.1 253774277 8156883 complement(3029313..3031964) 1 NC_012947.1 PFAM: DNA-directed RNA polymerase bacteriophage type; KEGG: ppu:PP_2266 DNA-directed RNA polymerase, bacteriophage and mitochondrial type; DNA-directed RNA polymerase 3031964 8156883 ECBD_2906 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-directed RNA polymerase YP_003037108.1 3029313 R 866768 CDS YP_003037109.1 253774278 8156884 complement(3031995..3032444) 1 NC_012947.1 PFAM: glycoside hydrolase family 2 sugar binding; KEGG: elf:LF82_1168 beta-galactosidase; beta-galactosidase 3032444 8156884 ECBD_2907 Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-galactosidase YP_003037109.1 3031995 R 866768 CDS YP_003037110.1 253774279 8156885 complement(3032567..3033658) 1 NC_012947.1 transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; lac repressor 3033658 lacI 8156885 lacI Escherichia coli 'BL21-Gold(DE3)pLysS AG' lac repressor YP_003037110.1 3032567 R 866768 CDS YP_003037111.1 253774280 8156887 3034036..3035319 1 NC_012947.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase 3035319 8156887 ECBD_2910 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pectinesterase YP_003037111.1 3034036 D 866768 CDS YP_003037112.1 253774281 8156889 3036382..3037134 1 NC_012947.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 3037134 gpmA 8156889 gpmA Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglyceromutase YP_003037112.1 3036382 D 866768 CDS YP_003037113.1 253774282 8156890 complement(3037292..3038344) 1 NC_012947.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3038344 8156890 ECBD_2913 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phospho-2-dehydro-3-deoxyheptonate aldolase YP_003037113.1 3037292 R 866768 CDS YP_003037114.1 253774283 8156891 3038660..3039040 1 NC_012947.1 KEGG: sfl:SF0551 homeobox protein; homeobox protein 3039040 8156891 ECBD_2914 Escherichia coli 'BL21-Gold(DE3)pLysS AG' homeobox protein YP_003037114.1 3038660 D 866768 CDS YP_003037115.1 253774284 8156892 3039154..3040095 1 NC_012947.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 3040095 8156892 ECBD_2915 Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc transporter ZitB YP_003037115.1 3039154 D 866768 CDS YP_003037116.1 253774285 8156893 complement(3040092..3040811) 1 NC_012947.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: ssn:SSON_0703 required for NMN transport; nicotinamide mononucleotide transporter PnuC 3040811 8156893 ECBD_2916 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nicotinamide mononucleotide transporter PnuC YP_003037116.1 3040092 R 866768 CDS YP_003037117.1 253774286 8156894 complement(3040849..3041892) 1 NC_012947.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 3041892 8156894 ECBD_2917 Escherichia coli 'BL21-Gold(DE3)pLysS AG' quinolinate synthetase YP_003037117.1 3040849 R 866768 CDS YP_003037118.1 253774287 8156902 complement(3043335..3044126) 1 NC_012947.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 3044126 8156902 ECBD_2918 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tol-pal system protein YbgF YP_003037118.1 3043335 R 866768 CDS YP_003037119.1 253774288 8156903 complement(3044136..3044657) 1 NC_012947.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: sfx:S0569 peptidoglycan-associated outer membrane lipoprotein; peptidoglycan-associated outer membrane lipoprotein 3044657 8156903 ECBD_2919 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidoglycan-associated outer membrane lipoprotein YP_003037119.1 3044136 R 866768 CDS YP_003037120.1 253774289 8156904 complement(3044692..3045984) 1 NC_012947.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 3045984 tolB 8156904 tolB Escherichia coli 'BL21-Gold(DE3)pLysS AG' translocation protein TolB YP_003037120.1 3044692 R 866768 CDS YP_003037121.1 253774290 8156905 complement(3046117..3047382) 1 NC_012947.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 3047382 tolA 8156905 tolA Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell envelope integrity inner membrane protein TolA YP_003037121.1 3046117 R 866768 CDS YP_003037122.1 253774291 8156906 complement(3047447..3047875) 1 NC_012947.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 3047875 8156906 ECBD_2922 Escherichia coli 'BL21-Gold(DE3)pLysS AG' colicin uptake protein TolR YP_003037122.1 3047447 R 866768 CDS YP_003037123.1 253774292 8156907 complement(3047879..3048571) 1 NC_012947.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 3048571 8156907 ECBD_2923 Escherichia coli 'BL21-Gold(DE3)pLysS AG' colicin uptake protein TolQ YP_003037123.1 3047879 R 866768 CDS YP_003037124.1 253774293 8156908 complement(3048568..3048972) 1 NC_012947.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase YbgC 3048972 8156908 ECBD_2924 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyl-CoA thioester hydrolase YbgC YP_003037124.1 3048568 R 866768 CDS YP_003037125.1 253774294 8156909 complement(3049122..3049415) 1 NC_012947.1 TIGRFAM: cyd operon protein YbgE; KEGG: sdy:SDY_0683 hypothetical protein; hypothetical protein 3049415 8156909 ECBD_2925 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037125.1 3049122 R 866768 CDS YP_003037126.1 253774295 8156910 complement(3049415..3049528) 1 NC_012947.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: sdy:SDY_0682 outer membrane lipoprotein; cyd operon protein YbgT 3049528 8156910 ECBD_2926 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cyd operon protein YbgT YP_003037126.1 3049415 R 866768 CDS YP_003037127.1 253774296 8156911 complement(3049543..3050682) 1 NC_012947.1 TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: sbc:SbBS512_E0655 cytochrome d ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 3050682 8156911 ECBD_2927 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome d ubiquinol oxidase subunit II YP_003037127.1 3049543 R 866768 CDS YP_003037128.1 253774297 8156912 complement(3050698..3052266) 1 NC_012947.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ssn:SSON_0685 cytochrome d terminal oxidase polypeptide subunit I; cytochrome bd ubiquinol oxidase subunit I 3052266 8156912 ECBD_2928 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome bd ubiquinol oxidase subunit I YP_003037128.1 3050698 R 866768 CDS YP_003037129.1 253774298 8156913 complement(3053113..3055746) 1 NC_012947.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; KEGG: sfv:SFV_0604 alpha-mannosidase; alpha-mannosidase 3055746 8156913 ECBD_2929 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha-mannosidase YP_003037129.1 3053113 R 866768 CDS YP_003037130.1 253774299 8156914 complement(3055764..3057680) 1 NC_012947.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC 3057680 8156914 ECBD_2930 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC YP_003037130.1 3055764 R 866768 CDS YP_003037131.1 253774300 8156915 3057849..3058571 1 NC_012947.1 regulates the succiny-lCoA synthetase operon; DNA-binding transcriptional repressor MngR 3058571 8156915 ECBD_2931 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor MngR YP_003037131.1 3057849 D 866768 CDS YP_003037132.1 253774301 8156916 complement(3058675..3059544) 1 NC_012947.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 3059544 8156916 ECBD_2932 Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinyl-CoA synthetase subunit alpha YP_003037132.1 3058675 R 866768 CDS YP_003037133.1 253774302 8156917 complement(3059544..3060710) 1 NC_012947.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 3060710 sucC 8156917 sucC Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinyl-CoA synthetase subunit beta YP_003037133.1 3059544 R 866768 CDS YP_003037134.1 253774303 8156918 complement(3061076..3062293) 1 NC_012947.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 3062293 8156918 ECBD_2934 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydrolipoamide succinyltransferase YP_003037134.1 3061076 R 866768 CDS YP_003037135.1 253774304 8156919 complement(3062308..3065109) 1 NC_012947.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 3065109 sucA 8156919 sucA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-oxoglutarate dehydrogenase E1 component YP_003037135.1 3062308 R 866768 CDS YP_003037136.1 253774305 8156920 complement(3065410..3066126) 1 NC_012947.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 3066126 sdhB 8156920 sdhB Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinate dehydrogenase iron-sulfur subunit YP_003037136.1 3065410 R 866768 CDS YP_003037137.1 253774306 8156921 complement(3066142..3067908) 1 NC_012947.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 3067908 sdhA 8156921 sdhA Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinate dehydrogenase flavoprotein subunit YP_003037137.1 3066142 R 866768 CDS YP_003037138.1 253774307 8156922 complement(3067908..3068255) 1 NC_012947.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: ssn:SSON_0673 succinate dehydrogenase cytochrome b556 small membrane subunit; succinate dehydrogenase cytochrome b556 small membrane subunit 3068255 sdhD 8156922 sdhD Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinate dehydrogenase cytochrome b556 small membrane subunit YP_003037138.1 3067908 R 866768 CDS YP_003037139.1 253774308 8156923 complement(3068249..3068653) 1 NC_012947.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sbc:SbBS512_E0640 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase cytochrome b556 large membrane subunit 3068653 sdhC 8156923 sdhC Escherichia coli 'BL21-Gold(DE3)pLysS AG' succinate dehydrogenase cytochrome b556 large membrane subunit YP_003037139.1 3068249 R 866768 CDS YP_003037140.1 253774309 8156924 3069034..3069141 1 NC_012947.1 KEGG: efe:EFER_2393 hypothetical protein; hypothetical protein 3069141 8156924 ECBD_2940 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037140.1 3069034 D 866768 CDS YP_003037141.1 253774310 8156925 3069347..3070630 1 NC_012947.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3070630 gltA 8156925 gltA Escherichia coli 'BL21-Gold(DE3)pLysS AG' type II citrate synthase YP_003037141.1 3069347 D 866768 CDS YP_003037142.1 253774311 8156926 3071020..3071586 1 NC_012947.1 PFAM: fimbrial protein; KEGG: ssn:SSON_0670 fimbrial-like protein; fimbrial protein 3071586 8156926 ECBD_2942 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037142.1 3071020 D 866768 CDS YP_003037143.1 253774312 8156927 3071637..3074096 1 NC_012947.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfx:S0592 outer membrane protein; fimbrial biogenesis outer membrane usher protein 3074096 8156927 ECBD_2943 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial biogenesis outer membrane usher protein YP_003037143.1 3071637 D 866768 CDS YP_003037144.1 253774313 8156928 3074111..3074842 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sbc:SbBS512_E0634 periplasmic pilus chaperone family protein; Pili assembly chaperone, N-terminal 3074842 8156928 ECBD_2944 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Pili assembly chaperone, N-terminal YP_003037144.1 3074111 D 866768 CDS YP_003037145.1 253774314 8156929 3074839..3075900 1 NC_012947.1 KEGG: ssn:SSON_0667 hypothetical protein; hypothetical protein 3075900 8156929 ECBD_2945 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037145.1 3074839 D 866768 CDS YP_003037146.1 253774315 8156930 3076052..3077098 1 NC_012947.1 TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; KEGG: ssn:SSON_0666 transporter; membrane protein AbrB duplication 3077098 8156930 ECBD_2946 Escherichia coli 'BL21-Gold(DE3)pLysS AG' membrane protein AbrB duplication YP_003037146.1 3076052 D 866768 CDS YP_003037147.1 253774316 8156931 complement(3077095..3077886) 1 NC_012947.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 3077886 8156931 ECBD_2947 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endonuclease VIII YP_003037147.1 3077095 R 866768 CDS YP_003037148.1 253774317 8156932 complement(3077922..3078656) 1 NC_012947.1 PFAM: LamB/YcsF family protein; KEGG: sbo:SBO_0572 hypothetical protein; LamB/YcsF family protein 3078656 8156932 ECBD_2948 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LamB/YcsF family protein YP_003037148.1 3077922 R 866768 CDS YP_003037149.1 253774318 8156933 complement(3078646..3079578) 1 NC_012947.1 TIGRFAM: urea amidolyase; PFAM: allophanate hydrolase subunit 2; SMART: allophanate hydrolase subunit 2; urea amidolyase 3079578 8156933 ECBD_2949 Escherichia coli 'BL21-Gold(DE3)pLysS AG' urea amidolyase YP_003037149.1 3078646 R 866768 CDS YP_003037150.1 253774319 8156934 complement(3079572..3080228) 1 NC_012947.1 PFAM: allophanate hydrolase subunit 1; SMART: allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 3080228 8156934 ECBD_2950 Escherichia coli 'BL21-Gold(DE3)pLysS AG' allophanate hydrolase subunit 1 YP_003037150.1 3079572 R 866768 CDS YP_003037151.1 253774320 8156935 complement(3080251..3080994) 1 NC_012947.1 PFAM: protein of unknown function DUF34; KEGG: sbc:SbBS512_E0627 NIF3 family protein; hydrolase-oxidase 3080994 8156935 ECBD_2951 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydrolase-oxidase YP_003037151.1 3080251 R 866768 CDS YP_003037152.1 253774321 8156936 3081265..3082746 1 NC_012947.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: sfx:S0601 transporter; amino acid/peptide transporter 3082746 8156936 ECBD_2952 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid/peptide transporter YP_003037152.1 3081265 D 866768 CDS YP_003037153.1 253774322 8156937 complement(3082785..3084206) 1 NC_012947.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 3084206 8156937 ECBD_2953 Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxyribodipyrimidine photolyase YP_003037153.1 3082785 R 866768 CDS YP_003037154.1 253774323 8158157 complement(3084203..3084712) 1 NC_012947.1 PFAM: protein of unknown function DUF1722; KEGG: sfv:SFV_0628 hypothetical protein; hypothetical protein 3084712 8158157 ECBD_2954 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037154.1 3084203 R 866768 CDS YP_003037155.1 253774324 8158158 complement(3084860..3085621) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 receptor; transposase IS4 family protein 3085621 8158158 ECBD_2955 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003037155.1 3084860 R 866768 CDS YP_003037156.1 253774325 8158160 complement(3088643..3089212) 1 NC_012947.1 hypothetical protein 3089212 8158160 ECBD_2957 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037156.1 3088643 R 866768 CDS YP_003037157.1 253774326 8159157 complement(3090760..3091086) 1 NC_012947.1 hypothetical protein 3091086 8159157 ECBD_2959 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037157.1 3090760 R 866768 CDS YP_003037158.1 253774327 8159159 complement(3093171..3093377) 1 NC_012947.1 KEGG: sdy:SDY_0635 hypothetical protein; hypothetical protein 3093377 8159159 ECBD_2961 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037158.1 3093171 R 866768 CDS YP_003037159.1 253774328 8159160 3093779..3095452 1 NC_012947.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase A 3095452 8159160 ECBD_2962 Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium-transporting ATPase A YP_003037159.1 3093779 D 866768 CDS YP_003037160.1 253774329 8159161 3095475..3097523 1 NC_012947.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase B 3097523 8159161 ECBD_2963 Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium-transporting ATPase B YP_003037160.1 3095475 D 866768 CDS YP_003037161.1 253774330 8159162 3097532..3098104 1 NC_012947.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase C 3098104 8159162 ECBD_2964 Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium-transporting ATPase C YP_003037161.1 3097532 D 866768 CDS YP_003037162.1 253774331 8159163 3098097..3100781 1 NC_012947.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 3100781 8159163 ECBD_2965 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensor protein KdpD YP_003037162.1 3098097 D 866768 CDS YP_003037163.1 253774332 8159164 3100778..3101455 1 NC_012947.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 3101455 8159164 ECBD_2966 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator KdpE YP_003037163.1 3100778 D 866768 CDS YP_003037164.1 253774333 8159165 complement(3101671..3101928) 1 NC_012947.1 KEGG: sbo:SBO_0555 hypothetical protein; hypothetical protein 3101928 8159165 ECBD_2967 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037164.1 3101671 R 866768 CDS YP_003037165.1 253774334 8159166 3102051..3104249 1 NC_012947.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sbo:SBO_0554 ornithine decarboxylase isozyme, inducible; ornithine decarboxylase 3104249 8159166 ECBD_2968 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ornithine decarboxylase YP_003037165.1 3102051 D 866768 CDS YP_003037166.1 253774335 8159167 3104246..3105565 1 NC_012947.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 3105565 potE 8159167 potE Escherichia coli 'BL21-Gold(DE3)pLysS AG' putrescine transporter YP_003037166.1 3104246 D 866768 CDS YP_003037167.1 253774336 8159169 3105914..3106564 1 NC_012947.1 KEGG: sbo:SBO_0552 hypothetical protein; hypothetical protein 3106564 8159169 ECBD_2971 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037167.1 3105914 D 866768 CDS YP_003037168.1 253774337 8159170 complement(3106605..3107099) 1 NC_012947.1 KEGG: sbo:SBO_0551 pectinase; pectinase 3107099 8159170 ECBD_2972 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pectinase YP_003037168.1 3106605 R 866768 CDS YP_003037169.1 253774338 8159171 complement(3107313..3108953) 1 NC_012947.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 3108953 8159171 ECBD_2973 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglucomutase YP_003037169.1 3107313 R 866768 CDS YP_003037170.1 253774339 8159172 complement(3108979..3109524) 1 NC_012947.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 3109524 8159172 ECBD_2974 Escherichia coli 'BL21-Gold(DE3)pLysS AG' replication initiation regulator SeqA YP_003037170.1 3108979 R 866768 CDS YP_003037171.1 253774340 8159173 3109709..3110473 1 NC_012947.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: sbo:SBO_0548 hypothetical protein; hypothetical protein 3110473 8159173 ECBD_2975 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037171.1 3109709 D 866768 CDS YP_003037172.1 253774341 8159174 3110544..3110906 1 NC_012947.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: ssn:SSON_0639 LexA regulated protein; LexA regulated protein 3110906 8159174 ECBD_2976 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LexA regulated protein YP_003037172.1 3110544 D 866768 CDS YP_003037173.1 253774342 8159175 3111046..3111576 1 NC_012947.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 3111576 8159175 ECBD_2977 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flavodoxin FldA YP_003037173.1 3111046 D 866768 CDS YP_003037174.1 253774343 8159176 3111865..3112311 1 NC_012947.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 3112311 fur 8159176 fur Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferric uptake regulator YP_003037174.1 3111865 D 866768 CDS YP_003037175.1 253774344 8159177 complement(3112395..3112721) 1 NC_012947.1 KEGG: sfl:SF0611 hypothetical protein; hypothetical protein 3112721 8159177 ECBD_2979 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037175.1 3112395 R 866768 CDS YP_003037176.1 253774345 8159178 complement(3112771..3114177) 1 NC_012947.1 PFAM: outer membrane porin; KEGG: sbc:SbBS512_E0569 outer membrane porin, OprD family; outer membrane porin 3114177 8159178 ECBD_2980 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane porin YP_003037176.1 3112771 R 866768 CDS YP_003037177.1 253774346 8159179 complement(3114754..3116418) 1 NC_012947.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3116418 8159179 ECBD_2981 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutaminyl-tRNA synthetase YP_003037177.1 3114754 R 866768 CDS YP_003037178.1 253774347 8159180 3116529..3116651 1 NC_012947.1 hypothetical protein 3116651 8159180 ECBD_2982 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037178.1 3116529 D 866768 CDS YP_003037179.1 253774348 8159181 complement(3116621..3118567) 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunits IIABC 3118567 8159181 ECBD_2983 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system N-acetyl glucosamine specific transporter subunits IIABC YP_003037179.1 3116621 R 866768 CDS YP_003037180.1 253774349 8159182 3118900..3119700 1 NC_012947.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 3119700 nagB 8159182 nagB Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucosamine-6-phosphate deaminase YP_003037180.1 3118900 D 866768 CDS YP_003037181.1 253774350 8159183 3119760..3120908 1 NC_012947.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 3120908 nagA 8159183 nagA Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylglucosamine-6-phosphate deacetylase YP_003037181.1 3119760 D 866768 CDS YP_003037182.1 253774351 8159184 3120917..3122137 1 NC_012947.1 PFAM: ROK family protein; KEGG: ssn:SSON_0630 transcriptional repressor of nag (N-acetylglucosamine) operon; ROK family protein 3122137 8159184 ECBD_2986 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ROK family protein YP_003037182.1 3120917 D 866768 CDS YP_003037183.1 253774352 8159185 3122185..3122937 1 NC_012947.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase; KEGG: sdy:SDY_0609 UMP phosphatase; UMP phosphatase 3122937 8159185 ECBD_2987 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UMP phosphatase YP_003037183.1 3122185 D 866768 CDS YP_003037184.1 253774353 8159186 3123334..3124998 1 NC_012947.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 3124998 asnB 8159186 asnB Escherichia coli 'BL21-Gold(DE3)pLysS AG' asparagine synthetase B YP_003037184.1 3123334 D 866768 CDS YP_003037185.1 253774354 8159194 complement(3126234..3127409) 1 NC_012947.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 3127409 ubiF 8159194 ubiF Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_003037185.1 3126234 R 866768 CDS YP_003037186.1 253774355 8159195 3127555..3128979 1 NC_012947.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3128979 8159195 ECBD_2990 Escherichia coli 'BL21-Gold(DE3)pLysS AG' (dimethylallyl)adenosine tRNA methylthiotransferase YP_003037186.1 3127555 D 866768 CDS YP_003037187.1 253774356 8159196 3129093..3130172 1 NC_012947.1 PFAM: PhoH family protein; KEGG: sdy:SDY_0596 ATP-binding protein in pho regulon; PhoH family protein 3130172 8159196 ECBD_2991 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PhoH family protein YP_003037187.1 3129093 D 866768 CDS YP_003037188.1 253774357 8159197 3130169..3130636 1 NC_012947.1 PFAM: protein of unknown function UPF0054; KEGG: sbo:SBO_0523 hypothetical protein; metalloprotease 3130636 8159197 ECBD_2992 Escherichia coli 'BL21-Gold(DE3)pLysS AG' metalloprotease YP_003037188.1 3130169 D 866768 CDS YP_003037189.1 253774358 8159198 3130726..3131604 1 NC_012947.1 PFAM: transporter-associated region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: ssn:SSON_0612 transporter; transporter-associated region 3131604 8159198 ECBD_2993 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter-associated region YP_003037189.1 3130726 D 866768 CDS YP_003037190.1 253774359 8159199 3131629..3133167 1 NC_012947.1 transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3133167 lnt 8159199 lnt Escherichia coli 'BL21-Gold(DE3)pLysS AG' apolipoprotein N-acyltransferase YP_003037190.1 3131629 D 866768 CDS YP_003037191.1 253774360 8159200 complement(3133294..3135171) 1 NC_012947.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: rhomboid family protein; KEGG: ssn:SSON_0610 hypothetical protein; 40-residue YVTN family beta-propeller repeat protein 3135171 8159200 ECBD_2995 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 40-residue YVTN family beta-propeller repeat protein YP_003037191.1 3133294 R 866768 CDS YP_003037192.1 253774361 8159201 3135626..3136534 1 NC_012947.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: sfv:SFV_0671 glutamate and aspartate transporter subunit; glutamate and aspartate transporter subunit 3136534 8159201 ECBD_2996 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate and aspartate transporter subunit YP_003037192.1 3135626 D 866768 CDS YP_003037193.1 253774362 8159202 3136704..3137444 1 NC_012947.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: efe:EFER_2449 glutamate and aspartate transporter subunit ; membrane component of ABC superfamily; polar amino acid ABC transporter permease 3137444 8159202 ECBD_2997 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polar amino acid ABC transporter permease YP_003037193.1 3136704 D 866768 CDS YP_003037194.1 253774363 8159203 3137444..3138118 1 NC_012947.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sdy:SDY_0588 glutamate/aspartate transporter permease; polar amino acid ABC transporter permease 3138118 8159203 ECBD_2998 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polar amino acid ABC transporter permease YP_003037194.1 3137444 D 866768 CDS YP_003037195.1 253774364 8159205 complement(3138501..3139352) 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: sfv:SFV_3530 IS150 ORF2; Integrase catalytic region 3139352 8159205 ECBD_3000 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003037195.1 3138501 R 866768 CDS YP_003037196.1 253774365 8159206 complement(3139349..3139870) 1 NC_012947.1 KEGG: sfx:S1483 IS103 orf; IS103 orf 3139870 8159206 ECBD_3001 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS103 orf YP_003037196.1 3139349 R 866768 CDS YP_003037197.1 253774366 8159207 3140407..3141342 1 NC_012947.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 3141342 rihA 8159207 rihA Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleoside hydrolase 1 YP_003037197.1 3140407 D 866768 CDS YP_003037198.1 253774367 8159208 3141426..3143096 1 NC_012947.1 PFAM: heat shock protein 70; KEGG: ssn:SSON_0604 DnaK protein; heat shock protein 70 3143096 8159208 ECBD_3003 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat shock protein 70 YP_003037198.1 3141426 D 866768 CDS YP_003037199.1 253774368 8159210 complement(3144603..3145310) 1 NC_012947.1 PFAM: protein of unknown function DUF1266; KEGG: sbo:SBO_0509 hypothetical protein; hypothetical protein 3145310 8159210 ECBD_3005 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037199.1 3144603 R 866768 CDS YP_003037200.1 253774369 8159211 3145474..3145986 1 NC_012947.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: sdy:SDY_0568 hypothetical protein; Sel1 domain protein repeat-containing protein 3145986 8159211 ECBD_3006 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Sel1 domain protein repeat-containing protein YP_003037200.1 3145474 D 866768 CDS YP_003037201.1 253774370 8159212 3146155..3146451 1 NC_012947.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: sbc:SbBS512_E0607 hypothetical protein; Sel1 domain protein repeat-containing protein 3146451 8159212 ECBD_3007 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Sel1 domain protein repeat-containing protein YP_003037201.1 3146155 D 866768 CDS YP_003037202.1 253774371 8159213 complement(3146521..3147003) 1 NC_012947.1 PFAM: protein of unknown function DUF1451; KEGG: ssn:SSON_0597 hypothetical protein; hypothetical protein 3147003 8159213 ECBD_3008 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037202.1 3146521 R 866768 CDS YP_003037203.1 253774372 8159214 3147238..3149820 1 NC_012947.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3149820 leuS 8159214 leuS Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucyl-tRNA synthetase YP_003037203.1 3147238 D 866768 CDS YP_003037204.1 253774373 8159215 3149835..3150416 1 NC_012947.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 3150416 8159215 ECBD_3010 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LPS-assembly lipoprotein RlpB YP_003037204.1 3149835 D 866768 CDS YP_003037205.1 253774374 8159216 3150416..3151447 1 NC_012947.1 required for the assembly and function of the DNAX complex which is required for the assembly of the subunit beta onto primed DNA; DNA polymerase III subunit delta 3151447 holA 8159216 holA Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunit delta YP_003037205.1 3150416 D 866768 CDS YP_003037206.1 253774375 8159217 3151449..3152090 1 NC_012947.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 3152090 nadD 8159217 nadD Escherichia coli 'BL21-Gold(DE3)pLysS AG' nicotinic acid mononucleotide adenylyltransferase YP_003037206.1 3151449 D 866768 CDS YP_003037207.1 253774376 8159218 3152114..3152725 1 NC_012947.1 PFAM: phosphoglycerate mutase; KEGG: sfv:SFV_0688 phosphohistidine protein PhpB; phosphoglycerate mutase 3152725 8159218 ECBD_3013 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglycerate mutase YP_003037207.1 3152114 D 866768 CDS YP_003037208.1 253774377 8159219 3152985..3153302 1 NC_012947.1 PFAM: Iojap-related protein; KEGG: sbc:SbBS512_E0614 iojap family protein; hypothetical protein 3153302 8159219 ECBD_3014 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037208.1 3152985 D 866768 CDS YP_003037209.1 253774378 8159220 3153306..3153773 1 NC_012947.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3153773 8159220 ECBD_3015 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rRNA large subunit methyltransferase YP_003037209.1 3153306 D 866768 CDS YP_003037210.1 253774379 8159221 3153804..3155705 1 NC_012947.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3155705 8159221 ECBD_3016 Escherichia coli 'BL21-Gold(DE3)pLysS AG' penicillin-binding protein 2 YP_003037210.1 3153804 D 866768 CDS YP_003037211.1 253774380 8159222 3155708..3156820 1 NC_012947.1 PFAM: cell cycle protein; KEGG: sbc:SbBS512_E0617 rod shape-determining protein RodA; cell wall shape-determining protein 3156820 8159222 ECBD_3017 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell wall shape-determining protein YP_003037211.1 3155708 D 866768 CDS YP_003037212.1 253774381 8159223 3156831..3157919 1 NC_012947.1 PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: ssn:SSON_0587 lipoprotein A; lipoprotein A 3157919 8159223 ECBD_3018 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein A YP_003037212.1 3156831 D 866768 CDS YP_003037213.1 253774382 8159224 3158059..3159270 1 NC_012947.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase fraction A 3159270 8159224 ECBD_3019 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanyl-D-alanine carboxypeptidase fraction A YP_003037213.1 3158059 D 866768 CDS YP_003037214.1 253774383 8159225 3159380..3159643 1 NC_012947.1 PFAM: protein of unknown function DUF493; KEGG: ssn:SSON_0585 hypothetical protein; hypothetical protein 3159643 8159225 ECBD_3020 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037214.1 3159380 D 866768 CDS YP_003037215.1 253774384 8159226 3159744..3160385 1 NC_012947.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system protein H; lipoate-protein ligase B 3160385 8159226 ECBD_3021 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoate-protein ligase B YP_003037215.1 3159744 D 866768 CDS YP_003037216.1 253774385 8159227 3160644..3161597 1 NC_012947.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfv:SFV_0697 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 3161597 8159227 ECBD_3022 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003037216.1 3160644 D 866768 CDS YP_003037217.1 253774386 8159228 3161806..3162771 1 NC_012947.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3162771 8159228 ECBD_3023 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoyl synthase YP_003037217.1 3161806 D 866768 CDS YP_003037218.1 253774387 8159229 complement(3162872..3163075) 1 NC_012947.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 3163075 tatE 8159229 tatE Escherichia coli 'BL21-Gold(DE3)pLysS AG' twin arginine translocase protein E YP_003037218.1 3162872 R 866768 CDS YP_003037219.1 253774388 8159230 complement(3163204..3163992) 1 NC_012947.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbc:SbBS512_E0540 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3163992 8159230 ECBD_3025 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003037219.1 3163204 R 866768 CDS YP_003037220.1 253774389 8159231 3164085..3164468 1 NC_012947.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 3164468 8159231 ECBD_3026 Escherichia coli 'BL21-Gold(DE3)pLysS AG' camphor resistance protein CrcB YP_003037220.1 3164085 D 866768 CDS YP_003037221.1 253774390 8159232 complement(3164523..3164732) 1 NC_012947.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 3164732 cspE 8159232 cspE Escherichia coli 'BL21-Gold(DE3)pLysS AG' cold shock protein CspE YP_003037221.1 3164523 R 866768 CDS YP_003037222.1 253774391 8159233 complement(3164901..3165461) 1 NC_012947.1 catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 3165461 pagP 8159233 pagP Escherichia coli 'BL21-Gold(DE3)pLysS AG' palmitoyl transferase YP_003037222.1 3164901 R 866768 CDS YP_003037223.1 253774392 8159234 3166049..3167434 1 NC_012947.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 3167434 dcuC 8159234 dcuC Escherichia coli 'BL21-Gold(DE3)pLysS AG' C4-dicarboxylate transporter DcuC YP_003037223.1 3166049 D 866768 CDS YP_003037224.1 253774393 8159235 complement(3167475..3168155) 1 NC_012947.1 regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 3168155 dpiA 8159235 dpiA Escherichia coli 'BL21-Gold(DE3)pLysS AG' two-component response regulator DpiA YP_003037224.1 3167475 R 866768 CDS YP_003037225.1 253774394 8159237 complement(3168124..3169782) 1 NC_012947.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; signal transduction histidine kinase regulating citrate/malate metabolism 3169782 8159237 ECBD_3031 Escherichia coli 'BL21-Gold(DE3)pLysS AG' signal transduction histidine kinase regulating citrate/malate metabolism YP_003037225.1 3168124 R 866768 CDS YP_003037226.1 253774395 8159238 3169915..3170190 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 3170190 8159238 ECBD_3032 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037226.1 3169915 D 866768 CDS YP_003037227.1 253774396 8159239 3170109..3170612 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 3170612 8159239 ECBD_3033 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037227.1 3170109 D 866768 CDS YP_003037228.1 253774397 8159886 3170698..3171756 1 NC_012947.1 TIGRFAM: citrate lyase ligase; cytidyltransferase-related domain protein; PFAM: citrate lyase ligase domain protein; GCN5-related N-acetyltransferase; SMART: citrate lyase ligase domain protein; citrate lyase ligase 3171756 8159886 ECBD_3034 Escherichia coli 'BL21-Gold(DE3)pLysS AG' citrate lyase ligase YP_003037228.1 3170698 D 866768 CDS YP_003037229.1 253774398 8158826 3171771..3172067 1 NC_012947.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 3172067 8158826 ECBD_3035 Escherichia coli 'BL21-Gold(DE3)pLysS AG' citrate lyase subunit gamma YP_003037229.1 3171771 D 866768 CDS YP_003037230.1 253774399 8158827 3172064..3172972 1 NC_012947.1 KEGG: sbc:SbBS512_E0530 citrate (pro-3S)-lyase, beta subunit; TIGRFAM: citrate lyase subunit beta; PFAM: HpcH/HpaI aldolase; citrate lyase subunit beta 3172972 8158827 ECBD_3036 Escherichia coli 'BL21-Gold(DE3)pLysS AG' citrate lyase subunit beta YP_003037230.1 3172064 D 866768 CDS YP_003037231.1 253774400 8158828 3172983..3174515 1 NC_012947.1 TIGRFAM: citrate lyase subunit alpha; PFAM: citrate lyase subunit alpha; citrate lyase subunit alpha 3174515 8158828 ECBD_3037 Escherichia coli 'BL21-Gold(DE3)pLysS AG' citrate lyase subunit alpha YP_003037231.1 3172983 D 866768 CDS YP_003037232.1 253774401 8158829 3174519..3175070 1 NC_012947.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 3175070 citX 8158829 citX Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase YP_003037232.1 3174519 D 866768 CDS YP_003037233.1 253774402 8158830 3175045..3175923 1 NC_012947.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 3175923 citG 8158830 citG Escherichia coli 'BL21-Gold(DE3)pLysS AG' triphosphoribosyl-dephospho-CoA synthase YP_003037233.1 3175045 D 866768 CDS YP_003037234.1 253774403 8158831 3175974..3177437 1 NC_012947.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; anion transporter 3177437 8158831 ECBD_3040 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anion transporter YP_003037234.1 3175974 D 866768 CDS YP_003037235.1 253774404 8158832 3177551..3178357 1 NC_012947.1 PFAM: ribonuclease T2; ribonuclease I 3178357 8158832 ECBD_3041 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease I YP_003037235.1 3177551 D 866768 CDS YP_003037236.1 253774405 8158833 3178587..3178997 1 NC_012947.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 3178997 8158833 ECBD_3042 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside diphosphate kinase regulator YP_003037236.1 3178587 D 866768 CDS YP_003037237.1 253774406 8158834 3179036..3179224 1 NC_012947.1 KEGG: sbc:SbBS512_E0523 hypothetical protein; hypothetical protein 3179224 8158834 ECBD_3043 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037237.1 3179036 D 866768 CDS YP_003037238.1 253774407 8158835 complement(3179228..3180466) 1 NC_012947.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein 3180466 8158835 ECBD_3044 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase GroES domain protein YP_003037238.1 3179228 R 866768 CDS YP_003037239.1 253774408 8158836 3180687..3181115 1 NC_012947.1 PFAM: UspA domain protein; KEGG: sdy:SDY_0542 hypothetical protein; UspA domain protein 3181115 8158836 ECBD_3045 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UspA domain protein YP_003037239.1 3180687 D 866768 CDS YP_003037240.1 253774409 8158837 complement(3181236..3182831) 1 NC_012947.1 TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E0520 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase, F subunit 3182831 8158837 ECBD_3046 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alkyl hydroperoxide reductase, F subunit YP_003037240.1 3181236 R 866768 CDS YP_003037241.1 253774410 8158838 complement(3183046..3183609) 1 NC_012947.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 3183609 8158838 ECBD_3047 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alkyl hydroperoxide reductase subunit C YP_003037241.1 3183046 R 866768 CDS YP_003037242.1 253774411 8158839 3183981..3184742 1 NC_012947.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 3184742 dsbG 8158839 dsbG Escherichia coli 'BL21-Gold(DE3)pLysS AG' disulfide isomerase/thiol-disulfide oxidase YP_003037242.1 3183981 D 866768 CDS YP_003037243.1 253774412 8158840 3184776..3185051 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 3185051 8158840 ECBD_3049 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037243.1 3184776 D 866768 CDS YP_003037244.1 253774413 8158841 3184970..3185473 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 3185473 8158841 ECBD_3050 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037244.1 3184970 D 866768 CDS YP_003037245.1 253774414 8158843 3186544..3187161 1 NC_012947.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: elf:LF82_2590 uncharacterized protein YbdM; ParB domain protein nuclease 3187161 8158843 ECBD_3052 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ParB domain protein nuclease YP_003037245.1 3186544 D 866768 CDS YP_003037246.1 253774415 8158844 complement(3187162..3188322) 1 NC_012947.1 catalyzes the transfer of an amino moiety; aminotransferase 3188322 8158844 ECBD_3053 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminotransferase YP_003037246.1 3187162 R 866768 CDS YP_003037247.1 253774416 8158845 3188431..3189519 1 NC_012947.1 member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein 3189519 8158845 ECBD_3054 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037247.1 3188431 D 866768 CDS YP_003037248.1 253774417 8158846 complement(3189529..3189726) 1 NC_012947.1 PFAM: protein of unknown function DUF466; KEGG: ssn:SSON_0550 hypothetical protein; hypothetical protein 3189726 8158846 ECBD_3055 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037248.1 3189529 R 866768 CDS YP_003037249.1 253774418 8158848 complement(3192184..3192597) 1 NC_012947.1 PFAM: thioesterase superfamily protein; KEGG: sfv:SFV_0545 hypothetical protein; hypothetical protein 3192597 8158848 ECBD_3057 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037249.1 3192184 R 866768 CDS YP_003037250.1 253774419 8158849 complement(3192600..3193346) 1 NC_012947.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 3193346 8158849 ECBD_3058 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_003037250.1 3192600 R 866768 CDS YP_003037251.1 253774420 8158850 complement(3193346..3194203) 1 NC_012947.1 PFAM: isochorismatase hydrolase; phosphopantetheine-binding; KEGG: sfl:SF0509 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase; Isochorismatase 3194203 8158850 ECBD_3059 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Isochorismatase YP_003037251.1 3193346 R 866768 CDS YP_003037252.1 253774421 8158851 complement(3194217..3195827) 1 NC_012947.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 3195827 entE 8158851 entE Escherichia coli 'BL21-Gold(DE3)pLysS AG' enterobactin synthase subunit E YP_003037252.1 3194217 R 866768 CDS YP_003037253.1 253774422 8158852 complement(3195837..3197012) 1 NC_012947.1 TIGRFAM: isochorismate synthase; PFAM: chorismate binding-like; KEGG: sdy:SDY_0524 isochorismate hydroxymutase 2; isochorismate synthase 3197012 8158852 ECBD_3061 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isochorismate synthase YP_003037253.1 3195837 R 866768 CDS YP_003037254.1 253774423 8158853 3197177..3197383 1 NC_012947.1 hypothetical protein 3197383 8158853 ECBD_3062 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037254.1 3197177 D 866768 CDS YP_003037255.1 253774424 8158854 3197387..3198343 1 NC_012947.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 3198343 8158854 ECBD_3063 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-enterobactin transporter periplasmic binding protein YP_003037255.1 3197387 D 866768 CDS YP_003037256.1 253774425 8158855 complement(3198347..3199597) 1 NC_012947.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 3199597 8158855 ECBD_3064 Escherichia coli 'BL21-Gold(DE3)pLysS AG' enterobactin exporter EntS YP_003037256.1 3198347 R 866768 CDS YP_003037257.1 253774426 8158856 3199708..3200712 1 NC_012947.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein 3200712 8158856 ECBD_3065 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-enterobactin transporter membrane protein YP_003037257.1 3199708 D 866768 CDS YP_003037258.1 253774427 8158857 3200709..3201701 1 NC_012947.1 with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease 3201701 8158857 ECBD_3066 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-enterobactin transporter permease YP_003037258.1 3200709 D 866768 CDS YP_003037259.1 253774428 8158858 3201698..3202513 1 NC_012947.1 with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein 3202513 8158858 ECBD_3067 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-enterobactin transporter ATP-binding protein YP_003037259.1 3201698 D 866768 CDS YP_003037260.1 253774429 8158859 complement(3202510..3203643) 1 NC_012947.1 part of the ferric enterobactin transporter; necessary for enetrobactin uptake; ferric enterobactin transporter FepE 3203643 8158859 ECBD_3068 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferric enterobactin transporter FepE YP_003037260.1 3202510 R 866768 CDS YP_003037261.1 253774430 8158860 complement(3203859..3207740) 1 NC_012947.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 3207740 entF 8158860 entF Escherichia coli 'BL21-Gold(DE3)pLysS AG' enterobactin synthase subunit F YP_003037261.1 3203859 R 866768 CDS YP_003037262.1 253774431 8158861 complement(3207737..3207955) 1 NC_012947.1 PFAM: MbtH domain protein; MbtH domain protein 3207955 8158861 ECBD_3070 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MbtH domain protein YP_003037262.1 3207737 R 866768 CDS YP_003037263.1 253774432 8158862 complement(3207958..3209160) 1 NC_012947.1 PFAM: esterase; KEGG: sbc:SbBS512_E0486 enterochelin esterase; enterobactin/ferric enterobactin esterase 3209160 8158862 ECBD_3071 Escherichia coli 'BL21-Gold(DE3)pLysS AG' enterobactin/ferric enterobactin esterase YP_003037263.1 3207958 R 866768 CDS YP_003037264.1 253774433 8158863 3209404..3211644 1 NC_012947.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 3211644 8158863 ECBD_3072 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane receptor FepA YP_003037264.1 3209404 D 866768 CDS YP_003037265.1 253774434 8158864 3211696..3212439 1 NC_012947.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sfv:SFV_0528 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 3212439 8158864 ECBD_3073 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex YP_003037265.1 3211696 D 866768 CDS YP_003037266.1 253774435 8158865 complement(3212558..3212698) 1 NC_012947.1 hypothetical protein 3212698 8158865 ECBD_3074 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037266.1 3212558 R 866768 CDS YP_003037267.1 253774436 8158866 complement(3212721..3213833) 1 NC_012947.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 3213833 8158866 ECBD_3075 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003037267.1 3212721 R 866768 CDS YP_003037268.1 253774437 8158867 complement(3213910..3214062) 1 NC_012947.1 PFAM: Hok/gef cell toxic protein; KEGG: sbc:SbBS512_E0481 Hok/Gef family protein; Hok/gef cell toxic protein 3214062 8158867 ECBD_3076 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Hok/gef cell toxic protein YP_003037268.1 3213910 R 866768 CDS YP_003037269.1 253774438 8158869 3214338..3214613 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 3214613 8158869 ECBD_3078 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037269.1 3214338 D 866768 CDS YP_003037270.1 253774439 8158870 3214532..3215035 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 3215035 8158870 ECBD_3079 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037270.1 3214532 D 866768 CDS YP_003037271.1 253774440 8158871 complement(3215542..3216063) 1 NC_012947.1 KEGG: sfx:S1483 IS103 orf; IS103 orf 3216063 8158871 ECBD_3080 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS103 orf YP_003037271.1 3215542 R 866768 CDS YP_003037272.1 253774441 8158872 3216332..3217450 1 NC_012947.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 3217450 8158872 ECBD_3081 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxylate-amine ligase YP_003037272.1 3216332 D 866768 CDS YP_003037273.1 253774442 8158873 3217564..3217764 1 NC_012947.1 KEGG: elf:LF82_2587 uncharacterized protein YbdJ; hypothetical protein 3217764 8158873 ECBD_3082 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037273.1 3217564 D 866768 CDS YP_003037274.1 253774443 8158874 3217829..3218197 1 NC_012947.1 PFAM: protein of unknown function DUF419; KEGG: ssn:SSON_0530 hypothetical protein; hypothetical protein 3218197 8158874 ECBD_3083 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037274.1 3217829 D 866768 CDS YP_003037275.1 253774444 8158875 3218291..3218944 1 NC_012947.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 3218944 8158875 ECBD_3084 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydropteridine reductase YP_003037275.1 3218291 D 866768 CDS YP_003037276.1 253774445 8158876 3219052..3220299 1 NC_012947.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ssn:SSON_0528 transport; MscS Mechanosensitive ion channel 3220299 8158876 ECBD_3085 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MscS Mechanosensitive ion channel YP_003037276.1 3219052 D 866768 CDS YP_003037277.1 253774446 8158877 complement(3220367..3221779) 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: sfv:SFV_0516 phenylalanine transporter; phenylalanine transporter 3221779 8158877 ECBD_3086 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phenylalanine transporter YP_003037277.1 3220367 R 866768 CDS YP_003037278.1 253774447 8158878 complement(3221845..3224988) 1 NC_012947.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, CzcA family 3224988 8158878 ECBD_3087 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heavy metal efflux pump, CzcA family YP_003037278.1 3221845 R 866768 CDS YP_003037279.1 253774448 8158879 complement(3225000..3226223) 1 NC_012947.1 with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver; copper/silver efflux system membrane fusion protein CusB 3226223 8158879 ECBD_3088 Escherichia coli 'BL21-Gold(DE3)pLysS AG' copper/silver efflux system membrane fusion protein CusB YP_003037279.1 3225000 R 866768 CDS YP_003037280.1 253774449 8158880 complement(3226239..3226571) 1 NC_012947.1 KEGG: sfv:SFV_0506 periplasmic copper-binding protein; periplasmic copper-binding protein 3226571 8158880 ECBD_3089 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic copper-binding protein YP_003037280.1 3226239 R 866768 CDS YP_003037281.1 253774450 8158881 complement(3226729..3228102) 1 NC_012947.1 with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver; copper/silver efflux system outer membrane protein CusC 3228102 8158881 ECBD_3090 Escherichia coli 'BL21-Gold(DE3)pLysS AG' copper/silver efflux system outer membrane protein CusC YP_003037281.1 3226729 R 866768 CDS YP_003037282.1 253774451 8158882 3228259..3228942 1 NC_012947.1 response regulator in two-component regulatory system with CusS; regulates the copper efflux system; CusR family transcriptional regulator 3228942 8158882 ECBD_3091 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CusR family transcriptional regulator YP_003037282.1 3228259 D 866768 CDS YP_003037283.1 253774452 8158883 3228932..3230380 1 NC_012947.1 KEGG: ssn:SSON_0521 sensor kinase CusS; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; sensor kinase CusS 3230380 8158883 ECBD_3092 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensor kinase CusS YP_003037283.1 3228932 D 866768 CDS YP_003037284.1 253774453 8158887 complement(3233798..3234373) 1 NC_012947.1 PFAM: DNA packaging Nu1; KEGG: ssn:SSON_2431 bacteriophage DNA packaging protein; DNA packaging Nu1 3234373 8158887 ECBD_3096 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA packaging Nu1 YP_003037284.1 3233798 R 866768 CDS YP_003037285.1 253774454 8158888 3234762..3234956 1 NC_012947.1 hypothetical protein 3234956 8158888 ECBD_3097 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037285.1 3234762 D 866768 CDS YP_003037286.1 253774455 8158889 3235317..3235610 1 NC_012947.1 PFAM: Bor family protein; KEGG: efe:EFER_2699 lipoprotein; DLP12 prophage; Bor family protein 3235610 8158889 ECBD_3098 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Bor family protein YP_003037286.1 3235317 D 866768 CDS YP_003037287.1 253774456 8158890 complement(3235642..3236103) 1 NC_012947.1 PFAM: lysis protein; KEGG: elf:LF82_2080 Rz endopeptidase from lambdoid prophage DLP12; lysis protein 3236103 8158890 ECBD_3099 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysis protein YP_003037287.1 3235642 R 866768 CDS YP_003037288.1 253774457 8158891 complement(3236100..3236597) 1 NC_012947.1 PFAM: glycoside hydrolase family 24; Lysozyme 3236597 8158891 ECBD_3100 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lysozyme YP_003037288.1 3236100 R 866768 CDS YP_003037289.1 253774458 8158892 complement(3236597..3236812) 1 NC_012947.1 PFAM: Lysis S family protein; Lysis S family protein 3236812 8158892 ECBD_3101 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Lysis S family protein YP_003037289.1 3236597 R 866768 CDS YP_003037290.1 253774459 8158894 3238035..3238310 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 3238310 8158894 ECBD_3103 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037290.1 3238035 D 866768 CDS YP_003037291.1 253774460 8158895 3238229..3238732 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 3238732 8158895 ECBD_3104 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037291.1 3238229 D 866768 CDS YP_003037292.1 253774461 8158896 complement(3239450..3239833) 1 NC_012947.1 PFAM: antitermination Q family protein; KEGG: ssn:SSON_2441 hypothetical protein; antitermination Q family protein 3239833 8158896 ECBD_3105 Escherichia coli 'BL21-Gold(DE3)pLysS AG' antitermination Q family protein YP_003037292.1 3239450 R 866768 CDS YP_003037293.1 253774462 8158897 complement(3239919..3240056) 1 NC_012947.1 KEGG: ssn:SSON_2442 hypothetical protein; hypothetical protein 3240056 8158897 ECBD_3106 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037293.1 3239919 R 866768 CDS YP_003037294.1 253774463 8158898 complement(3240056..3240418) 1 NC_012947.1 DLP12 prophage; Holliday junction resolvase; endodeoxyribonuclease RUS 3240418 8158898 ECBD_3107 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endodeoxyribonuclease RUS YP_003037294.1 3240056 R 866768 CDS YP_003037295.1 253774464 8158899 complement(3240415..3240705) 1 NC_012947.1 PFAM: protein of unknown function DUF1364; KEGG: elf:LF82_2577 82 prophage-derived uncharacterized protein YbcO; hypothetical protein 3240705 8158899 ECBD_3108 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037295.1 3240415 R 866768 CDS YP_003037296.1 253774465 8158900 complement(3240698..3240868) 1 NC_012947.1 DLP12 prophage; conserved protein similar to phage 82 and lambda proteins; prophage protein NinE 3240868 8158900 ECBD_3109 Escherichia coli 'BL21-Gold(DE3)pLysS AG' prophage protein NinE YP_003037296.1 3240698 R 866768 CDS YP_003037297.1 253774466 8158901 complement(3240868..3241323) 1 NC_012947.1 DLP12 prophage; hypothetical protein 3241323 8158901 ECBD_3110 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037297.1 3240868 R 866768 CDS YP_003037298.1 253774467 8158902 complement(3241320..3241421) 1 NC_012947.1 hypothetical protein 3241421 8158902 ECBD_3111 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037298.1 3241320 R 866768 CDS YP_003037299.1 253774468 8158903 complement(3241538..3242335) 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sfv:SFV_1978 regulator; AraC family transcriptional regulator 3242335 8158903 ECBD_3112 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003037299.1 3241538 R 866768 CDS YP_003037300.1 253774469 8158904 complement(3242345..3242896) 1 NC_012947.1 DLP12 prophage; similar to PEBP/RK1P protein family in eukaryotes that inhibits MEK phosphorylation by Raf-1; crystal structure suggests similar properties but exact function is unknown; kinase inhibitor 3242896 8158904 ECBD_3113 Escherichia coli 'BL21-Gold(DE3)pLysS AG' kinase inhibitor YP_003037300.1 3242345 R 866768 CDS YP_003037301.1 253774470 8158905 complement(3243361..3244887) 1 NC_012947.1 PFAM: Recombinase; Resolvase domain; KEGG: elf:LF82_2573 uncharacterized protein YbcK; Recombinase 3244887 8158905 ECBD_3114 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Recombinase YP_003037301.1 3243361 R 866768 CDS YP_003037302.1 253774471 8158906 complement(3245142..3245474) 1 NC_012947.1 member of the small MDR (multidrug resistance) family of transporters; in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin; proton-dependent secondary transporter which exchanges protons for compound translocation; multidrug efflux protein 3245474 emrE 8158906 emrE Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux protein YP_003037302.1 3245142 R 866768 CDS YP_003037303.1 253774472 8156098 3246256..3246471 1 NC_012947.1 hypothetical protein 3246471 8156098 ECBD_3118 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037303.1 3246256 D 866768 CDS YP_003037304.1 253774473 8156099 3246570..3246788 1 NC_012947.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: efe:EFER_2731 conserved hypothetical protein from bacteriophage origin; Zn-finger, prokaryotic DksA/TraR C4 type; DnaK suppressor protein; TraR/DksA family transcriptional regulator 3246788 8156099 ECBD_3119 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TraR/DksA family transcriptional regulator YP_003037304.1 3246570 D 866768 CDS YP_003037305.1 253774474 8156100 3246836..3247114 1 NC_012947.1 KEGG: efe:EFER_2732 conserved hypothetical protein from phage origin; hypothetical protein 3247114 8156100 ECBD_3120 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037305.1 3246836 D 866768 CDS YP_003037306.1 253774475 8156101 3247086..3247457 1 NC_012947.1 KEGG: sek:SSPA2268 excisionase; excisionase 3247457 8156101 ECBD_3121 Escherichia coli 'BL21-Gold(DE3)pLysS AG' excisionase YP_003037306.1 3247086 D 866768 CDS YP_003037307.1 253774476 8156102 3247313..3248476 1 NC_012947.1 PFAM: integrase; KEGG: sed:SeD_A0603 prophage DLP12 integrase; integrase 3248476 8156102 ECBD_3122 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integrase YP_003037307.1 3247313 D 866768 CDS YP_003037308.1 253774477 8156104 3248811..3249443 1 NC_012947.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 3249443 8156104 ECBD_3123 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator FimZ YP_003037308.1 3248811 D 866768 CDS YP_003037309.1 253774478 8156105 complement(3249446..3249961) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: ssn:SSON_0507 predicted fimbrial-like adhesin protein; fimbrial protein 3249961 8156105 ECBD_3124 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037309.1 3249446 R 866768 CDS YP_003037310.1 253774479 8156106 complement(3249972..3250949) 1 NC_012947.1 P pilus assembly protein pilin FimA-like protein 3250949 8156106 ECBD_3125 Escherichia coli 'BL21-Gold(DE3)pLysS AG' P pilus assembly protein pilin FimA-like protein YP_003037310.1 3249972 R 866768 CDS YP_003037311.1 253774480 8156107 complement(3250991..3253600) 1 NC_012947.1 PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 3253600 8156107 ECBD_3126 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial biogenesis outer membrane usher protein YP_003037311.1 3250991 R 866768 CDS YP_003037312.1 253774481 8156108 complement(3253631..3254323) 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; Pili assembly chaperone, N-terminal 3254323 8156108 ECBD_3127 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Pili assembly chaperone, N-terminal YP_003037312.1 3253631 R 866768 CDS YP_003037313.1 253774482 8156109 complement(3254543..3255085) 1 NC_012947.1 PFAM: fimbrial protein; fimbrial protein 3255085 8156109 ECBD_3128 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037313.1 3254543 R 866768 CDS YP_003037314.1 253774483 8156110 3255556..3256422 1 NC_012947.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3256422 8156110 ECBD_3129 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_003037314.1 3255556 D 866768 CDS YP_003037315.1 253774484 8156111 3256424..3256636 1 NC_012947.1 KEGG: sfv:SFV_0486 hypothetical protein; hypothetical protein 3256636 8156111 ECBD_3130 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037315.1 3256424 D 866768 CDS YP_003037316.1 253774485 8156112 3256744..3257265 1 NC_012947.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: sbc:SbBS512_E0447 hypothetical protein; membrane-bound metal-dependent hydrolase 3257265 8156112 ECBD_3131 Escherichia coli 'BL21-Gold(DE3)pLysS AG' membrane-bound metal-dependent hydrolase YP_003037316.1 3256744 D 866768 CDS YP_003037317.1 253774486 8156113 complement(3257301..3258686) 1 NC_012947.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3258686 cysS 8156113 cysS Escherichia coli 'BL21-Gold(DE3)pLysS AG' cysteinyl-tRNA synthetase YP_003037317.1 3257301 R 866768 CDS YP_003037318.1 253774487 8156114 3258860..3259354 1 NC_012947.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sfv:SFV_0483 peptidyl-prolyl cis-trans isomerase B (rotamase B); peptidyl-prolyl cis-trans isomerase B (rotamase B) 3259354 8156114 ECBD_3133 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidyl-prolyl cis-trans isomerase B (rotamase B) YP_003037318.1 3258860 D 866768 CDS YP_003037319.1 253774488 8156115 3259357..3260079 1 NC_012947.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3260079 8156115 ECBD_3134 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-2,3-diacylglucosamine hydrolase YP_003037319.1 3259357 D 866768 CDS YP_003037320.1 253774489 8156116 3260197..3260706 1 NC_012947.1 KEGG: sbo:SBO_0420 phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 3260706 8156116 ECBD_3135 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_003037320.1 3260197 D 866768 CDS YP_003037321.1 253774490 8156117 3260703..3261770 1 NC_012947.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3261770 8156117 ECBD_3136 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribosylaminoimidazole carboxylase ATPase subunit YP_003037321.1 3260703 D 866768 CDS YP_003037322.1 253774491 8156118 complement(3261907..3262800) 1 NC_012947.1 KEGG: ssn:SSON_0497 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase 3262800 8156118 ECBD_3137 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbamate kinase YP_003037322.1 3261907 R 866768 CDS YP_003037323.1 253774492 8156119 complement(3262797..3263612) 1 NC_012947.1 KEGG: sbo:SBO_0423 carboxylase; carboxylase 3263612 8156119 ECBD_3138 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxylase YP_003037323.1 3262797 R 866768 CDS YP_003037324.1 253774493 8156120 complement(3263623..3264882) 1 NC_012947.1 PFAM: protein of unknown function DUF1116; KEGG: elf:LF82_3525 uncharacterized protein YlbE; hypothetical protein 3264882 8156120 ECBD_3139 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037324.1 3263623 R 866768 CDS YP_003037325.1 253774494 8156121 complement(3264892..3266559) 1 NC_012947.1 multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 3266559 8156121 ECBD_3140 Escherichia coli 'BL21-Gold(DE3)pLysS AG' membrane protein FdrA YP_003037325.1 3264892 R 866768 CDS YP_003037326.1 253774495 8156122 3266876..3267925 1 NC_012947.1 TIGRFAM: ureidoglycolate dehydrogenase; PFAM: malate/L-lactate dehydrogenase; ureidoglycolate dehydrogenase 3267925 8156122 ECBD_3141 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ureidoglycolate dehydrogenase YP_003037326.1 3266876 D 866768 CDS YP_003037327.1 253774496 8156123 3267947..3269182 1 NC_012947.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 3269182 8156123 ECBD_3142 Escherichia coli 'BL21-Gold(DE3)pLysS AG' allantoate amidohydrolase YP_003037327.1 3267947 D 866768 CDS YP_003037328.1 253774497 8156124 3269193..3269978 1 NC_012947.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: elf:LF82_3524 uncharacterized protein YlbA; hypothetical protein 3269978 8156124 ECBD_3143 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037328.1 3269193 D 866768 CDS YP_003037329.1 253774498 8156125 complement(3270206..3271351) 1 NC_012947.1 TIGRFAM: glycerate kinase; PFAM: glycerate kinase; glycerate kinase II 3271351 8156125 ECBD_3144 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerate kinase II YP_003037329.1 3270206 R 866768 CDS YP_003037330.1 253774499 8156126 complement(3271373..3272674) 1 NC_012947.1 PFAM: xanthine/uracil/vitamin C permease; purine permease YbbY 3272674 8156126 ECBD_3145 Escherichia coli 'BL21-Gold(DE3)pLysS AG' purine permease YbbY YP_003037330.1 3271373 R 866768 CDS YP_003037331.1 253774500 8156127 complement(3272731..3274092) 1 NC_012947.1 Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 3274092 8156127 ECBD_3146 Escherichia coli 'BL21-Gold(DE3)pLysS AG' allantoinase YP_003037331.1 3272731 R 866768 CDS YP_003037332.1 253774501 8156128 complement(3274152..3275606) 1 NC_012947.1 TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; allantoin permease 3275606 8156128 ECBD_3147 Escherichia coli 'BL21-Gold(DE3)pLysS AG' allantoin permease YP_003037332.1 3274152 R 866768 CDS YP_003037333.1 253774502 8156129 complement(3275775..3276653) 1 NC_012947.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 3276653 8156129 ECBD_3148 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-hydroxy-3-oxopropionate reductase YP_003037333.1 3275775 R 866768 CDS YP_003037334.1 253774503 8156130 complement(3276753..3277529) 1 NC_012947.1 TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 3277529 8156130 ECBD_3149 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydroxypyruvate isomerase YP_003037334.1 3276753 R 866768 CDS YP_003037335.1 253774504 8156131 complement(3277542..3279323) 1 NC_012947.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 3279323 8156131 ECBD_3150 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glyoxylate carboligase YP_003037335.1 3277542 R 866768 CDS YP_003037336.1 253774505 8156132 complement(3279413..3280228) 1 NC_012947.1 regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 3280228 8156132 ECBD_3151 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor AllR YP_003037336.1 3279413 R 866768 CDS YP_003037337.1 253774506 8156133 complement(3280306..3280788) 1 NC_012947.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 3280788 8156133 ECBD_3152 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ureidoglycolate hydrolase YP_003037337.1 3280306 R 866768 CDS YP_003037338.1 253774507 8156134 3281018..3281944 1 NC_012947.1 activator of the allDC-ylbA operon involved in allantoin utilization; AllS family transcriptional regulator 3281944 8156134 ECBD_3153 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AllS family transcriptional regulator YP_003037338.1 3281018 D 866768 CDS YP_003037339.1 253774508 8156135 3282013..3283107 1 NC_012947.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 3283107 8156135 ECBD_3154 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA 2-selenouridine synthase YP_003037339.1 3282013 D 866768 CDS YP_003037340.1 253774509 8156136 3283223..3283594 1 NC_012947.1 KEGG: sdy:SDY_0400 hypothetical protein; hypothetical protein 3283594 8156136 ECBD_3155 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037340.1 3283223 D 866768 CDS YP_003037341.1 253774510 8156137 complement(3284338..3284598) 1 NC_012947.1 KEGG: sbo:SBO_0403 hypothetical protein; hypothetical protein 3284598 8156137 ECBD_3156 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037341.1 3284338 R 866768 CDS YP_003037342.1 253774511 8156138 complement(3284579..3285289) 1 NC_012947.1 PFAM: RHS protein; KEGG: sbo:SBO_0401 protein in rhs element; RHS protein 3285289 8156138 ECBD_3157 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RHS protein YP_003037342.1 3284579 R 866768 CDS YP_003037343.1 253774512 8156139 complement(3285289..3285657) 1 NC_012947.1 hypothetical protein 3285657 8156139 ECBD_3158 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037343.1 3285289 R 866768 CDS YP_003037344.1 253774513 8156140 complement(3285697..3289977) 1 NC_012947.1 TIGRFAM: hypothetical protein; PFAM: RHS protein; YD repeat-containing protein; hypothetical protein 3289977 8156140 ECBD_3159 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037344.1 3285697 R 866768 CDS YP_003037345.1 253774514 8156141 complement(3290407..3292821) 1 NC_012947.1 PFAM: protein of unknown function DUF214; KEGG: ssn:SSON_0485 oxidoreductase; hypothetical protein 3292821 8156141 ECBD_3160 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037345.1 3290407 R 866768 CDS YP_003037346.1 253774515 8156142 complement(3292818..3293504) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sbc:SbBS512_E0430 ABC transporter ATP-binding protein; ABC transporter ATP-binding protein 3293504 8156142 ECBD_3161 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATP-binding protein YP_003037346.1 3292818 R 866768 CDS YP_003037347.1 253774516 8156143 3293472..3294098 1 NC_012947.1 PFAM: lipolytic protein G-D-S-L family; KEGG: efe:EFER_0552 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 3294098 8156143 ECBD_3162 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 YP_003037347.1 3293472 D 866768 CDS YP_003037348.1 253774517 8156144 3294127..3294897 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbc:SbBS512_E0428 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 3294897 8156144 ECBD_3163 Escherichia coli 'BL21-Gold(DE3)pLysS AG' short chain dehydrogenase YP_003037348.1 3294127 D 866768 CDS YP_003037349.1 253774518 8156145 3294958..3295812 1 NC_012947.1 PFAM: thioredoxin domain; KEGG: efe:EFER_0550 thioredoxin domain-containing protein; thioredoxin 3295812 8156145 ECBD_3164 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thioredoxin YP_003037349.1 3294958 D 866768 CDS YP_003037350.1 253774519 8156146 complement(3295875..3296654) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: ssn:SSON_0480 metal resistance protein; hypothetical protein 3296654 8156146 ECBD_3165 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037350.1 3295875 R 866768 CDS YP_003037351.1 253774520 8156147 complement(3296641..3297318) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sdy:SDY_0409 ABC transporter ATP-binding protein YbbL; ABC transporter ATP-binding protein 3297318 8156147 ECBD_3166 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATP-binding protein YP_003037351.1 3296641 R 866768 CDS YP_003037352.1 253774521 8156148 3297464..3298381 1 NC_012947.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sfx:S0441 protease; band 7 protein 3298381 8156148 ECBD_3167 Escherichia coli 'BL21-Gold(DE3)pLysS AG' band 7 protein YP_003037352.1 3297464 D 866768 CDS YP_003037353.1 253774522 8156149 3298378..3298836 1 NC_012947.1 PFAM: protein of unknown function DUF107; KEGG: sbc:SbBS512_E0423 nodulation efficiency family protein; hypothetical protein 3298836 8156149 ECBD_3168 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037353.1 3298378 D 866768 CDS YP_003037354.1 253774523 8156150 complement(3298837..3299244) 1 NC_012947.1 activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 3299244 8156150 ECBD_3169 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator CueR YP_003037354.1 3298837 R 866768 CDS YP_003037355.1 253774524 8156151 complement(3299369..3300661) 1 NC_012947.1 PFAM: amino acid permease-associated region; Spore germination protein; KEGG: sdy:SDY_0432 amino acid/amine transport protein; amino acid permease-associated region 3300661 8156151 ECBD_3170 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid permease-associated region YP_003037355.1 3299369 R 866768 CDS YP_003037356.1 253774525 8156152 complement(3300664..3301596) 1 NC_012947.1 catalyzes the formation of glutamate from glutamine; glutaminase 3301596 8156152 ECBD_3171 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutaminase YP_003037356.1 3300664 R 866768 CDS YP_003037357.1 253774526 8156153 3301858..3304362 1 NC_012947.1 TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; copper exporting ATPase 3304362 copA 8156153 copA Escherichia coli 'BL21-Gold(DE3)pLysS AG' copper exporting ATPase YP_003037357.1 3301858 D 866768 CDS YP_003037358.1 253774527 8156154 complement(3304779..3305174) 1 NC_012947.1 KEGG: sbc:SbBS512_E0418 addiction module antidote protein, HigA family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 3305174 8156154 ECBD_3173 Escherichia coli 'BL21-Gold(DE3)pLysS AG' XRE family transcriptional regulator YP_003037358.1 3304779 R 866768 CDS YP_003037359.1 253774528 8156155 3305258..3306052 1 NC_012947.1 PFAM: GumN family protein; KEGG: sfv:SFV_0455 ligase; GumN family protein 3306052 8156155 ECBD_3174 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GumN family protein YP_003037359.1 3305258 D 866768 CDS YP_003037360.1 253774529 8156156 3306256..3306735 1 NC_012947.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sfv:SFV_0454 hypothetical protein; hypothetical protein 3306735 8156156 ECBD_3175 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037360.1 3306256 D 866768 CDS YP_003037361.1 253774530 8156157 complement(3306772..3308424) 1 NC_012947.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 3308424 ushA 8156157 ushA Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_003037361.1 3306772 R 866768 CDS YP_003037362.1 253774531 8156158 3308642..3309862 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily MFS_1 3309862 8156158 ECBD_3177 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003037362.1 3308642 D 866768 CDS YP_003037363.1 253774532 8156159 3310100..3311776 1 NC_012947.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein 3311776 8156159 ECBD_3178 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cation:proton antiport protein YP_003037363.1 3310100 D 866768 CDS YP_003037364.1 253774533 8156160 complement(3311909..3313213) 1 NC_012947.1 PFAM: PfkB domain protein; KEGG: ssn:SSON_0464 inosine-guanosine kinase; inosine kinase 3313213 8156160 ECBD_3179 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inosine kinase YP_003037364.1 3311909 R 866768 CDS YP_003037365.1 253774534 8156161 3313365..3314324 1 NC_012947.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: ssn:SSON_0463 acetyl esterase; acetyl esterase 3314324 8156161 ECBD_3180 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl esterase YP_003037365.1 3313365 D 866768 CDS YP_003037366.1 253774535 8156162 complement(3314321..3315283) 1 NC_012947.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 3315283 hemH 8156162 hemH Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferrochelatase YP_003037366.1 3314321 R 866768 CDS YP_003037367.1 253774536 8156163 complement(3315519..3316163) 1 NC_012947.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 3316163 adk 8156163 adk Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenylate kinase YP_003037367.1 3315519 R 866768 CDS YP_003037368.1 253774537 8156164 complement(3316344..3318218) 1 NC_012947.1 molecular chaperone; heat shock protein 90 3318218 8156164 ECBD_3183 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat shock protein 90 YP_003037368.1 3316344 R 866768 CDS YP_003037369.1 253774538 8156165 complement(3318328..3318933) 1 NC_012947.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 3318933 recR 8156165 recR Escherichia coli 'BL21-Gold(DE3)pLysS AG' recombination protein RecR YP_003037369.1 3318328 R 866768 CDS YP_003037370.1 253774539 8156166 complement(3318933..3319262) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sea:SeAg_B0530 hypothetical protein; hypothetical protein 3319262 8156166 ECBD_3185 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037370.1 3318933 R 866768 CDS YP_003037371.1 253774540 8156167 complement(3319315..3321246) 1 NC_012947.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 3321246 8156167 ECBD_3186 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunits gamma and tau YP_003037371.1 3319315 R 866768 CDS YP_003037372.1 253774541 8156168 complement(3321375..3321926) 1 NC_012947.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 3321926 8156168 ECBD_3187 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenine phosphoribosyltransferase YP_003037372.1 3321375 R 866768 CDS YP_003037373.1 253774542 8156169 complement(3322079..3322456) 1 NC_012947.1 PFAM: protein of unknown function DUF454; KEGG: sdy:SDY_0451 hypothetical protein; hypothetical protein 3322456 8156169 ECBD_3188 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037373.1 3322079 R 866768 CDS YP_003037374.1 253774543 8156170 3322526..3323053 1 NC_012947.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' 3323053 8156170 ECBD_3189 Escherichia coli 'BL21-Gold(DE3)pLysS AG' primosomal replication protein N'' YP_003037374.1 3322526 D 866768 CDS YP_003037375.1 253774544 8156171 3323067..3323228 1 NC_012947.1 KEGG: sfv:SFV_0439 hypothetical protein; hypothetical protein 3323228 8156171 ECBD_3190 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037375.1 3323067 D 866768 CDS YP_003037376.1 253774545 8156172 complement(3323440..3326802) 1 NC_012947.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 3326802 8156172 ECBD_3191 Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium efflux protein KefA YP_003037376.1 3323440 R 866768 CDS YP_003037377.1 253774546 8156173 complement(3326930..3327577) 1 NC_012947.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 3327577 8156173 ECBD_3192 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor AcrR YP_003037377.1 3326930 R 866768 CDS YP_003037378.1 253774547 8156174 3327719..3328912 1 NC_012947.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; efflux transporter RND family, MFP subunit 3328912 8156174 ECBD_3193 Escherichia coli 'BL21-Gold(DE3)pLysS AG' efflux transporter RND family, MFP subunit YP_003037378.1 3327719 D 866768 CDS YP_003037379.1 253774548 8156175 3328935..3332084 1 NC_012947.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: elf:LF82_0025 acriflavine resistance protein B; transporter hydrophobe/amphiphile efflux-1 (HAE1) family 3332084 8156175 ECBD_3194 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter hydrophobe/amphiphile efflux-1 (HAE1) family YP_003037379.1 3328935 D 866768 CDS YP_003037380.1 253774549 8156176 3332630..3333004 1 NC_012947.1 KEGG: ssn:SSON_0448 hypothetical protein; hypothetical protein 3333004 8156176 ECBD_3195 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037380.1 3332630 D 866768 CDS YP_003037381.1 253774550 8156177 3333030..3333248 1 NC_012947.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 3333248 8156177 ECBD_3196 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hemolysin expression-modulating protein YP_003037381.1 3333030 D 866768 CDS YP_003037382.1 253774551 8159240 3333420..3333971 1 NC_012947.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sdy:SDY_0460 maltose O-acetyltransferase; maltose O-acetyltransferase 3333971 8159240 ECBD_3197 Escherichia coli 'BL21-Gold(DE3)pLysS AG' maltose O-acetyltransferase YP_003037382.1 3333420 D 866768 CDS YP_003037383.1 253774552 8159241 3334087..3334557 1 NC_012947.1 KEGG: sdy:SDY_0461 hypothetical protein; hypothetical protein 3334557 8159241 ECBD_3198 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037383.1 3334087 D 866768 CDS YP_003037384.1 253774553 8159242 3334721..3336271 1 NC_012947.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: sfv:SFV_0431 hypothetical protein; EAL domain protein 3336271 8159242 ECBD_3199 Escherichia coli 'BL21-Gold(DE3)pLysS AG' EAL domain protein YP_003037384.1 3334721 D 866768 CDS YP_003037385.1 253774554 8159243 complement(3336313..3336666) 1 NC_012947.1 PFAM: protein of unknown function DUF1428; KEGG: sdy:SDY_0392 hypothetical protein; hypothetical protein 3336666 8159243 ECBD_3200 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037385.1 3336313 R 866768 CDS YP_003037386.1 253774555 8159245 3337045..3337356 1 NC_012947.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: ssn:SSON_0442 hypothetical protein; methylated-DNA/protein-cysteine methyltransferase 3337356 8159245 ECBD_3201 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methylated-DNA/protein-cysteine methyltransferase YP_003037386.1 3337045 D 866768 CDS YP_003037387.1 253774556 8159246 complement(3337387..3337959) 1 NC_012947.1 KEGG: sbo:SBO_0348 glycoprotein/polysaccharide metabolism; glycoprotein/polysaccharide metabolism 3337959 8159246 ECBD_3202 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoprotein/polysaccharide metabolism YP_003037387.1 3337387 R 866768 CDS YP_003037388.1 253774557 8159247 3338177..3339037 1 NC_012947.1 TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: ssn:SSON_0440 acyl-CoA thioesterase II; acyl-CoA thioesterase II 3339037 8159247 ECBD_3203 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyl-CoA thioesterase II YP_003037388.1 3338177 D 866768 CDS YP_003037389.1 253774558 8159248 complement(3339086..3340372) 1 NC_012947.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ssn:SSON_0439 ammonium transporter; ammonium transporter 3340372 8159248 ECBD_3204 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ammonium transporter YP_003037389.1 3339086 R 866768 CDS YP_003037390.1 253774559 8159249 complement(3340402..3340740) 1 NC_012947.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 3340740 8159249 ECBD_3205 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrogen regulatory protein P-II 2 YP_003037390.1 3340402 R 866768 CDS YP_003037391.1 253774560 8159250 complement(3340921..3342702) 1 NC_012947.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: sbo:SBO_0344 multidrug transporter membrane\ATP-binding components; multidrug transporter membrane\ATP-binding components 3342702 8159250 ECBD_3206 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug transporter membrane\ATP-binding components YP_003037391.1 3340921 R 866768 CDS YP_003037392.1 253774561 8159251 complement(3342695..3344467) 1 NC_012947.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: sfv:SFV_0422 multidrug transporter membrane\ATP-binding components; multidrug transporter membrane\ATP-binding components 3344467 8159251 ECBD_3207 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug transporter membrane\ATP-binding components YP_003037392.1 3342695 R 866768 CDS YP_003037393.1 253774562 8159252 complement(3344497..3344955) 1 NC_012947.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sbc:SbBS512_E0370 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3344955 8159252 ECBD_3208 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AsnC family transcriptional regulator YP_003037393.1 3344497 R 866768 CDS YP_003037394.1 253774563 8159253 complement(3345108..3345926) 1 NC_012947.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; KEGG: sbc:SbBS512_E0369 hydrolase Cof; Cof-like hydrolase 3345926 8159253 ECBD_3209 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Cof-like hydrolase YP_003037394.1 3345108 R 866768 CDS YP_003037395.1 253774564 8159254 3346026..3347726 1 NC_012947.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbc:SbBS512_E0368 bacterial extracellular solute-binding protein, family 5; extracellular solute-binding protein family 5 3347726 8159254 ECBD_3210 Escherichia coli 'BL21-Gold(DE3)pLysS AG' extracellular solute-binding protein family 5 YP_003037395.1 3346026 D 866768 CDS YP_003037396.1 253774565 8159255 3347791..3348486 1 NC_012947.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 3348486 8159255 ECBD_3211 Escherichia coli 'BL21-Gold(DE3)pLysS AG' queuosine biosynthesis protein QueC YP_003037396.1 3347791 D 866768 CDS YP_003037397.1 253774566 8159256 complement(3348538..3348936) 1 NC_012947.1 PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E0366 thioesterase family protein; thioesterase superfamily protein 3348936 8159256 ECBD_3212 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thioesterase superfamily protein YP_003037397.1 3348538 R 866768 CDS YP_003037398.1 253774567 8159257 complement(3349042..3349413) 1 NC_012947.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: DNA-binding protein; KEGG: elf:LF82_2555 uncharacterized protein YbaV; competence protein ComEA helix-hairpin-helix repeat protein 3349413 8159257 ECBD_3213 Escherichia coli 'BL21-Gold(DE3)pLysS AG' competence protein ComEA helix-hairpin-helix repeat protein YP_003037398.1 3349042 R 866768 CDS YP_003037399.1 253774568 8159258 complement(3349564..3351435) 1 NC_012947.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: elf:LF82_1706 peptidyl-prolyl cis-trans isomerase D; peptidyl-prolyl cis-trans isomerase (rotamase D) 3351435 8159258 ECBD_3214 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidyl-prolyl cis-trans isomerase (rotamase D) YP_003037399.1 3349564 R 866768 CDS YP_003037400.1 253774569 8159259 complement(3351627..3351899) 1 NC_012947.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 3351899 8159259 ECBD_3215 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator HU subunit beta YP_003037400.1 3351627 R 866768 CDS YP_003037401.1 253774570 8159260 complement(3352108..3354462) 1 NC_012947.1 KEGG: elf:LF82_1216 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; ATPase AAA; DNA-binding ATP-dependent protease La 3354462 8159260 ECBD_3216 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding ATP-dependent protease La YP_003037401.1 3352108 R 866768 CDS YP_003037402.1 253774571 8159261 3354618..3355730 1 NC_012947.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 3355730 8159261 ECBD_3217 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003037402.1 3354618 D 866768 CDS YP_003037403.1 253774572 8159262 3355753..3355893 1 NC_012947.1 hypothetical protein 3355893 8159262 ECBD_3218 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037403.1 3355753 D 866768 CDS YP_003037404.1 253774573 8159263 complement(3356000..3357274) 1 NC_012947.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3357274 clpX 8159263 clpX Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent protease ATP-binding subunit ClpX YP_003037404.1 3356000 R 866768 CDS YP_003037405.1 253774574 8159264 complement(3357400..3358023) 1 NC_012947.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3358023 clpP 8159264 clpP Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent Clp protease proteolytic subunit YP_003037405.1 3357400 R 866768 CDS YP_003037406.1 253774575 8159265 complement(3358269..3359567) 1 NC_012947.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3359567 tig 8159265 tig Escherichia coli 'BL21-Gold(DE3)pLysS AG' trigger factor YP_003037406.1 3358269 R 866768 CDS YP_003037407.1 253774576 8159266 complement(3359714..3359902) 1 NC_012947.1 KEGG: sdy:SDY_0297 hypothetical protein; hypothetical protein 3359902 8159266 ECBD_3222 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037407.1 3359714 R 866768 CDS YP_003037408.1 253774577 8159267 complement(3359911..3360225) 1 NC_012947.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 3360225 8159267 ECBD_3223 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator BolA YP_003037408.1 3359911 R 866768 CDS YP_003037409.1 253774578 8159268 3360533..3361111 1 NC_012947.1 PFAM: Uncharacterized lipoprotein; KEGG: ssn:SSON_0417 hypothetical protein; hypothetical protein 3361111 8159268 ECBD_3224 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037409.1 3360533 D 866768 CDS YP_003037410.1 253774579 8159269 3361155..3362630 1 NC_012947.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 3362630 ampG 8159269 ampG Escherichia coli 'BL21-Gold(DE3)pLysS AG' muropeptide transporter YP_003037410.1 3361155 D 866768 CDS YP_003037411.1 253774580 8159270 3363092..3364039 1 NC_012947.1 TIGRFAM: ubiquinol oxidase subunit II; PFAM: COX aromatic rich domain protein; cytochrome C oxidase subunit II; KEGG: sbo:SBO_0326 cytochrome o ubiquinol oxidase subunit II; cytochrome o ubiquinol oxidase subunit II 3364039 8159270 ECBD_3226 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome o ubiquinol oxidase subunit II YP_003037411.1 3363092 D 866768 CDS YP_003037412.1 253774581 8159271 3364061..3366052 1 NC_012947.1 KEGG: ssn:SSON_0414 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 3366052 8159271 ECBD_3227 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome o ubiquinol oxidase subunit I YP_003037412.1 3364061 D 866768 CDS YP_003037413.1 253774582 8159272 3366042..3366656 1 NC_012947.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit III; PFAM: cytochrome C oxidase subunit III; KEGG: ssn:SSON_0413 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 3366656 8159272 ECBD_3228 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome o ubiquinol oxidase subunit III YP_003037413.1 3366042 D 866768 CDS YP_003037414.1 253774583 8159273 3366656..3366985 1 NC_012947.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: sbo:SBO_0323 cytochrome o ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 3366985 8159273 ECBD_3229 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome o ubiquinol oxidase subunit IV YP_003037414.1 3366656 D 866768 CDS YP_003037415.1 253774584 8159274 3366997..3367887 1 NC_012947.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 3367887 8159274 ECBD_3230 Escherichia coli 'BL21-Gold(DE3)pLysS AG' protoheme IX farnesyltransferase YP_003037415.1 3366997 D 866768 CDS YP_003037416.1 253774585 8159275 3368072..3368383 1 NC_012947.1 PFAM: protein of unknown function DUF1778; KEGG: ssn:SSON_0410 hypothetical protein; hypothetical protein 3368383 8159275 ECBD_3231 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037416.1 3368072 D 866768 CDS YP_003037417.1 253774586 8159276 3368367..3368909 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_0409 acetyltransferase; GCN5-related N-acetyltransferase 3368909 8159276 ECBD_3232 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GCN5-related N-acetyltransferase YP_003037417.1 3368367 D 866768 CDS YP_003037418.1 253774587 8159277 complement(3368965..3369960) 1 NC_012947.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: sfv:SFV_0396 hypothetical protein; Sel1 domain protein repeat-containing protein 3369960 8159277 ECBD_3233 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Sel1 domain protein repeat-containing protein YP_003037418.1 3368965 R 866768 CDS YP_003037419.1 253774588 8159278 3370317..3371681 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_0404 transporter; major facilitator superfamily MFS_1 3371681 8159278 ECBD_3234 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003037419.1 3370317 D 866768 CDS YP_003037420.1 253774589 8159279 complement(3371809..3372300) 1 NC_012947.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 3372300 8159279 ECBD_3235 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleotide-binding protein YP_003037420.1 3371809 R 866768 CDS YP_003037421.1 253774590 8159280 3372468..3373379 1 NC_012947.1 Ketopantoate reductase; catalyzes the NADPH reduction of Ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 3373379 8159280 ECBD_3236 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-dehydropantoate 2-reductase YP_003037421.1 3372468 D 866768 CDS YP_003037422.1 253774591 8159281 3373342..3373932 1 NC_012947.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: sbc:SbBS512_E0346 protein ThiJ; DJ-1 family protein 3373932 8159281 ECBD_3237 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DJ-1 family protein YP_003037422.1 3373342 D 866768 CDS YP_003037423.1 253774592 8159282 complement(3373986..3375434) 1 NC_012947.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 3375434 8159282 ECBD_3238 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine biosynthesis protein ThiI YP_003037423.1 3373986 R 866768 CDS YP_003037424.1 253774593 8159283 3375640..3375882 1 NC_012947.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 3375882 8159283 ECBD_3239 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exodeoxyribonuclease VII small subunit YP_003037424.1 3375640 D 866768 CDS YP_003037425.1 253774594 8159284 3375882..3376781 1 NC_012947.1 PFAM: polyprenyl synthetase; KEGG: sdy:SDY_0309 geranyltranstransferase; geranyltranstransferase 3376781 8159284 ECBD_3240 Escherichia coli 'BL21-Gold(DE3)pLysS AG' geranyltranstransferase YP_003037425.1 3375882 D 866768 CDS YP_003037426.1 253774595 8159285 3376806..3378668 1 NC_012947.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3378668 8159285 ECBD_3241 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 1-deoxy-D-xylulose-5-phosphate synthase YP_003037426.1 3376806 D 866768 CDS YP_003037427.1 253774596 8159286 3378848..3379822 1 NC_012947.1 PFAM: aldo/keto reductase; aldo/keto reductase 3379822 8159286 ECBD_3242 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldo/keto reductase YP_003037427.1 3378848 D 866768 CDS YP_003037428.1 253774597 8159287 complement(3379876..3380394) 1 NC_012947.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 3380394 8159287 ECBD_3243 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphatidylglycerophosphatase A YP_003037428.1 3379876 R 866768 CDS YP_003037429.1 253774598 8159288 complement(3380372..3381349) 1 NC_012947.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 3381349 8159288 ECBD_3244 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine monophosphate kinase YP_003037429.1 3380372 R 866768 CDS YP_003037430.1 253774599 8159289 complement(3381427..3381846) 1 NC_012947.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 3381846 nusB 8159289 nusB Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcription antitermination protein NusB YP_003037430.1 3381427 R 866768 CDS YP_003037431.1 253774600 8159290 complement(3381866..3382336) 1 NC_012947.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3382336 ribH 8159290 ribH Escherichia coli 'BL21-Gold(DE3)pLysS AG' 6,7-dimethyl-8-ribityllumazine synthase YP_003037431.1 3381866 R 866768 CDS YP_003037432.1 253774601 8159291 complement(3382425..3383528) 1 NC_012947.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 3383528 ribD 8159291 ribD Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_003037432.1 3382425 R 866768 CDS YP_003037433.1 253774602 8159292 complement(3383532..3383981) 1 NC_012947.1 PFAM: ATP-cone domain protein; KEGG: ssn:SSON_0390 hypothetical protein; NrdR family transcriptional regulator 3383981 nrdR 8159292 nrdR Escherichia coli 'BL21-Gold(DE3)pLysS AG' NrdR family transcriptional regulator YP_003037433.1 3383532 R 866768 CDS YP_003037434.1 253774603 8159293 3384132..3384671 1 NC_012947.1 KEGG: ssn:SSON_0389 hypothetical protein; hypothetical protein 3384671 8159293 ECBD_3249 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037434.1 3384132 D 866768 CDS YP_003037435.1 253774604 8159294 3384970..3385854 1 NC_012947.1 PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: sfv:SFV_0376 outer membrane protein Tsx; nucleoside-specific channel-forming protein Tsx 3385854 8159294 ECBD_3250 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside-specific channel-forming protein Tsx YP_003037435.1 3384970 D 866768 CDS YP_003037436.1 253774605 8159295 complement(3386031..3386378) 1 NC_012947.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ssn:SSON_0387 hypothetical protein; hypothetical protein 3386378 8159295 ECBD_3251 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037436.1 3386031 R 866768 CDS YP_003037437.1 253774606 8159296 complement(3386506..3387477) 1 NC_012947.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 3387477 secF 8159296 secF Escherichia coli 'BL21-Gold(DE3)pLysS AG' preprotein translocase subunit SecF YP_003037437.1 3386506 R 866768 CDS YP_003037438.1 253774607 8159297 complement(3387488..3389302) 1 NC_012947.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 3389302 secD 8159297 secD Escherichia coli 'BL21-Gold(DE3)pLysS AG' preprotein translocase subunit SecD YP_003037438.1 3387488 R 866768 CDS YP_003037439.1 253774608 8159298 complement(3389363..3389695) 1 NC_012947.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 3389695 yajC 8159298 yajC Escherichia coli 'BL21-Gold(DE3)pLysS AG' preprotein translocase subunit YajC YP_003037439.1 3389363 R 866768 CDS YP_003037440.1 253774609 8159299 complement(3389718..3390845) 1 NC_012947.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3390845 tgt 8159299 tgt Escherichia coli 'BL21-Gold(DE3)pLysS AG' queuine tRNA-ribosyltransferase YP_003037440.1 3389718 R 866768 CDS YP_003037441.1 253774610 8159300 complement(3390901..3391971) 1 NC_012947.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 3391971 queA 8159300 queA Escherichia coli 'BL21-Gold(DE3)pLysS AG' S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003037441.1 3390901 R 866768 CDS YP_003037442.1 253774611 8159301 3392064..3392645 1 NC_012947.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase 3392645 8159301 ECBD_3257 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyl carrier protein phosphodiesterase YP_003037442.1 3392064 D 866768 CDS YP_003037443.1 253774612 8159302 complement(3392650..3394467) 1 NC_012947.1 PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain; KEGG: ssn:SSON_0380 maltodextrin glucosidase; maltodextrin glucosidase 3394467 8159302 ECBD_3258 Escherichia coli 'BL21-Gold(DE3)pLysS AG' maltodextrin glucosidase YP_003037443.1 3392650 R 866768 CDS YP_003037444.1 253774613 8159303 complement(3394623..3395996) 1 NC_012947.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease 3395996 proY 8159303 proY Escherichia coli 'BL21-Gold(DE3)pLysS AG' proline-specific permease YP_003037444.1 3394623 R 866768 CDS YP_003037445.1 253774614 8159304 complement(3396072..3397391) 1 NC_012947.1 TIGRFAM: branched-chain amino acid transporter II carrier protein; PFAM: branched-chain amino acid transporter II carrier protein; KEGG: sdy:SDY_0336 branched chain amino acid transporter II carrier protein; branched-chain amino acid transporter II carrier protein 3397391 8159304 ECBD_3260 Escherichia coli 'BL21-Gold(DE3)pLysS AG' branched-chain amino acid transporter II carrier protein YP_003037445.1 3396072 R 866768 CDS YP_003037446.1 253774615 8159305 complement(3397798..3399093) 1 NC_012947.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 3399093 phoR 8159305 phoR Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate regulon sensor protein YP_003037446.1 3397798 R 866768 CDS YP_003037447.1 253774616 8159306 complement(3399151..3399840) 1 NC_012947.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 3399840 8159306 ECBD_3262 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator PhoB YP_003037447.1 3399151 R 866768 CDS YP_003037448.1 253774617 8159307 3400030..3401232 1 NC_012947.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 3401232 8159307 ECBD_3263 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease subunit SbcD YP_003037448.1 3400030 D 866768 CDS YP_003037449.1 253774618 8159308 3401229..3404375 1 NC_012947.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease subunit SbcC 3404375 8159308 ECBD_3264 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease subunit SbcC YP_003037449.1 3401229 D 866768 CDS YP_003037450.1 253774619 8159309 3404417..3405685 1 NC_012947.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transporter AraJ 3405685 8159309 ECBD_3265 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MFS transporter AraJ YP_003037450.1 3404417 D 866768 CDS YP_003037451.1 253774620 8159310 complement(3405709..3405951) 1 NC_012947.1 hypothetical protein 3405951 8159310 ECBD_3266 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037451.1 3405709 R 866768 CDS YP_003037452.1 253774621 8159311 complement(3405930..3406838) 1 NC_012947.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 3406838 8159311 ECBD_3267 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructokinase YP_003037452.1 3405930 R 866768 CDS YP_003037453.1 253774622 8159312 3406897..3407874 1 NC_012947.1 PFAM: exonuclease RdgC; KEGG: cko:CKO_02778 recombination associated protein; exonuclease RdgC 3407874 8159312 ECBD_3268 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exonuclease RdgC YP_003037453.1 3406897 D 866768 CDS YP_003037454.1 253774623 8159313 3407944..3408219 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 3408219 8159313 ECBD_3269 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037454.1 3407944 D 866768 CDS YP_003037455.1 253774624 8159314 3408138..3408641 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 3408641 8159314 ECBD_3270 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037455.1 3408138 D 866768 CDS YP_003037456.1 253774625 8159315 3408676..3408981 1 NC_012947.1 hypothetical protein 3408981 8159315 ECBD_3271 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037456.1 3408676 D 866768 CDS YP_003037457.1 253774626 8159316 3409012..3409131 1 NC_012947.1 KEGG: sbc:SbBS512_E0309 hypothetical protein; hypothetical protein 3409131 8159316 ECBD_3272 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037457.1 3409012 D 866768 CDS YP_003037458.1 253774627 8159317 complement(3409298..3409582) 1 NC_012947.1 PFAM: protein of unknown function DUF1255; KEGG: ssn:SSON_0367 hypothetical protein; hypothetical protein 3409582 8159317 ECBD_3273 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037458.1 3409298 R 866768 CDS YP_003037459.1 253774628 8159318 complement(3409654..3410331) 1 NC_012947.1 PFAM: AroM family protein; KEGG: sbc:SbBS512_E0307 AroM protein; hypothetical protein 3410331 8159318 ECBD_3274 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037459.1 3409654 R 866768 CDS YP_003037460.1 253774629 8156178 complement(3410589..3410780) 1 NC_012947.1 KEGG: ssn:SSON_0365 hypothetical protein; hypothetical protein 3410780 8156178 ECBD_3275 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037460.1 3410589 R 866768 CDS YP_003037461.1 253774630 8156179 complement(3410830..3411354) 1 NC_012947.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase II 3411354 aroL 8156179 aroL Escherichia coli 'BL21-Gold(DE3)pLysS AG' shikimate kinase II YP_003037461.1 3410830 R 866768 CDS YP_003037462.1 253774631 8156180 complement(3411537..3411995) 1 NC_012947.1 PFAM: protein of unknown function DUF188; KEGG: sdy:SDY_0357 hypothetical protein; hypothetical protein 3411995 8156180 ECBD_3277 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037462.1 3411537 R 866768 CDS YP_003037463.1 253774632 8156181 3412115..3412924 1 NC_012947.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 3412924 8156181 ECBD_3278 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyrroline-5-carboxylate reductase YP_003037463.1 3412115 D 866768 CDS YP_003037464.1 253774633 8156182 complement(3412941..3414056) 1 NC_012947.1 catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 3414056 adrA 8156182 adrA Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate cyclase AdrA YP_003037464.1 3412941 R 866768 CDS YP_003037465.1 253774634 8156183 complement(3414158..3414478) 1 NC_012947.1 PFAM: PsiF repeat protein; KEGG: ssn:SSON_0359 hypothetical protein; hypothetical protein 3414478 8156183 ECBD_3280 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037465.1 3414158 R 866768 CDS YP_003037466.1 253774635 8156184 complement(3414597..3416012) 1 NC_012947.1 KEGG: sbo:SBO_0278 bacterial alkaline phosphatase; PFAM: alkaline phosphatase; SMART: alkaline phosphatase; alkaline phosphatase 3416012 8156184 ECBD_3281 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alkaline phosphatase YP_003037466.1 3414597 R 866768 CDS YP_003037467.1 253774636 8156185 complement(3416113..3416373) 1 NC_012947.1 KEGG: ssn:SSON_0357 hypothetical protein; hypothetical protein 3416373 8156185 ECBD_3282 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037467.1 3416113 R 866768 CDS YP_003037468.1 253774637 8156186 3416836..3417930 1 NC_012947.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 3417930 ddl 8156186 ddl Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanyl-alanine synthetase A YP_003037468.1 3416836 D 866768 CDS YP_003037469.1 253774638 8156187 complement(3417954..3418166) 1 NC_012947.1 KEGG: sdy:SDY_0366 hypothetical protein; hypothetical protein 3418166 8156187 ECBD_3284 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037469.1 3417954 R 866768 CDS YP_003037470.1 253774639 8156188 3418426..3418734 1 NC_012947.1 KEGG: sbc:SbBS512_E0296 hypothetical protein; hypothetical protein 3418734 8156188 ECBD_3285 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037470.1 3418426 D 866768 CDS YP_003037471.1 253774640 8156189 complement(3418793..3419887) 1 NC_012947.1 PFAM: protein of unknown function DUF1615; KEGG: elf:LF82_2531 uncharacterized protein YaiW; hypothetical protein 3419887 8156189 ECBD_3286 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037471.1 3418793 R 866768 CDS YP_003037472.1 253774641 8156190 complement(3419900..3421120) 1 NC_012947.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 3421120 8156190 ECBD_3287 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter YP_003037472.1 3419900 R 866768 CDS YP_003037473.1 253774642 8156191 3421325..3421426 1 NC_012947.1 hypothetical protein 3421426 8156191 ECBD_3288 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037473.1 3421325 D 866768 CDS YP_003037474.1 253774643 8156192 3421472..3422629 1 NC_012947.1 this protein has no known enzymatic function; beta-lactam binding protein AmpH 3422629 8156192 ECBD_3289 Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-lactam binding protein AmpH YP_003037474.1 3421472 D 866768 CDS YP_003037475.1 253774644 8156193 complement(3422630..3423253) 1 NC_012947.1 KEGG: ssn:SSON_0350 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 3423253 8156193 ECBD_3290 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003037475.1 3422630 R 866768 CDS YP_003037476.1 253774645 8156194 complement(3423341..3426247) 1 NC_012947.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Pertactin; KEGG: stm:STM0373 flagellar protein; outer membrane autotransporter barrel domain protein 3426247 8156194 ECBD_3291 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane autotransporter barrel domain protein YP_003037476.1 3423341 R 866768 CDS YP_003037477.1 253774646 8156195 3426770..3427744 1 NC_012947.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3427744 8156195 ECBD_3292 Escherichia coli 'BL21-Gold(DE3)pLysS AG' delta-aminolevulinic acid dehydratase YP_003037477.1 3426770 D 866768 CDS YP_003037478.1 253774647 8156196 complement(3427851..3428702) 1 NC_012947.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase 3428702 tauD 8156196 tauD Escherichia coli 'BL21-Gold(DE3)pLysS AG' taurine dioxygenase YP_003037478.1 3427851 R 866768 CDS YP_003037479.1 253774648 8156197 complement(3428699..3429526) 1 NC_012947.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: elf:LF82_2227 taurine transporter permease protein TauC; taurine transporter subunit 3429526 8156197 ECBD_3294 Escherichia coli 'BL21-Gold(DE3)pLysS AG' taurine transporter subunit YP_003037479.1 3428699 R 866768 CDS YP_003037480.1 253774649 8156198 complement(3429523..3430290) 1 NC_012947.1 Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit 3430290 tauB 8156198 tauB Escherichia coli 'BL21-Gold(DE3)pLysS AG' taurine transporter ATP-binding subunit YP_003037480.1 3429523 R 866768 CDS YP_003037481.1 253774650 8156199 complement(3430303..3431265) 1 NC_012947.1 with TauB and TauC is responsible for taurine uptake.; taurine transporter substrate binding subunit 3431265 tauA 8156199 tauA Escherichia coli 'BL21-Gold(DE3)pLysS AG' taurine transporter substrate binding subunit YP_003037481.1 3430303 R 866768 CDS YP_003037482.1 253774651 8156200 3431429..3431704 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 3431704 8156200 ECBD_3297 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037482.1 3431429 D 866768 CDS YP_003037483.1 253774652 8156201 3431623..3432126 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 3432126 8156201 ECBD_3298 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037483.1 3431623 D 866768 CDS YP_003037484.1 253774653 8156202 3432208..3432981 1 NC_012947.1 KEGG: ssn:SSON_0337 hypothetical protein; hypothetical protein 3432981 8156202 ECBD_3299 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037484.1 3432208 D 866768 CDS YP_003037485.1 253774654 8156203 3433167..3433442 1 NC_012947.1 formaldehyde-induced negative regulator of the frmRAB operon; regulator protein FrmR 3433442 8156203 ECBD_3300 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulator protein FrmR YP_003037485.1 3433167 D 866768 CDS YP_003037486.1 253774655 8156204 3433477..3434586 1 NC_012947.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sbc:SbBS512_E0271 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3434586 8156204 ECBD_3301 Escherichia coli 'BL21-Gold(DE3)pLysS AG' S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_003037486.1 3433477 D 866768 CDS YP_003037487.1 253774656 8156205 3434679..3435512 1 NC_012947.1 KEGG: ssn:SSON_0334 esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: esterase; S-formylglutathione hydrolase 3435512 8156205 ECBD_3302 Escherichia coli 'BL21-Gold(DE3)pLysS AG' S-formylglutathione hydrolase YP_003037487.1 3434679 D 866768 CDS YP_003037488.1 253774657 8156206 complement(3435738..3436277) 1 NC_012947.1 hypothetical protein 3436277 8156206 ECBD_3303 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037488.1 3435738 R 866768 CDS YP_003037489.1 253774658 8156207 complement(3436379..3437590) 1 NC_012947.1 TIGRFAM: benzoate transport; PFAM: major facilitator superfamily MFS_1; general substrate transporter; 3-hydroxyphenylpropionic transporter MhpT 3437590 8156207 ECBD_3304 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-hydroxyphenylpropionic transporter MhpT YP_003037489.1 3436379 R 866768 CDS YP_003037490.1 253774659 8156208 complement(3437968..3438981) 1 NC_012947.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 3438981 8156208 ECBD_3305 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxy-2-ketovalerate aldolase YP_003037490.1 3437968 R 866768 CDS YP_003037491.1 253774660 8156209 complement(3438978..3439928) 1 NC_012947.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 3439928 8156209 ECBD_3306 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetaldehyde dehydrogenase YP_003037491.1 3438978 R 866768 CDS YP_003037492.1 253774661 8156210 complement(3439925..3440734) 1 NC_012947.1 catalyzes the formation of 2-keto-4-hydroxypentanoic acid from 2-hydroxypentadienoic acid; 2-keto-4-pentenoate hydratase 3440734 mhpD 8156210 mhpD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-keto-4-pentenoate hydratase YP_003037492.1 3439925 R 866768 CDS YP_003037493.1 253774662 8156211 complement(3440744..3441610) 1 NC_012947.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3441610 8156211 ECBD_3308 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha/beta hydrolase fold protein YP_003037493.1 3440744 R 866768 CDS YP_003037494.1 253774663 8156212 complement(3441628..3442572) 1 NC_012947.1 catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family; 3-(2,3-dihydroxyphenyl)propionate dioxygenase 3442572 mhpB 8156212 mhpB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-(2,3-dihydroxyphenyl)propionate dioxygenase YP_003037494.1 3441628 R 866768 CDS YP_003037495.1 253774664 8156213 complement(3442574..3444238) 1 NC_012947.1 catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase 3444238 mhpA 8156213 mhpA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-(3-hydroxyphenyl)propionate hydroxylase YP_003037495.1 3442574 R 866768 CDS YP_003037496.1 253774665 8156214 3444417..3445262 1 NC_012947.1 activator of 3-phenylpropionic acid catabolism; DNA-binding transcriptional activator MhpR 3445262 8156214 ECBD_3311 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional activator MhpR YP_003037496.1 3444417 D 866768 CDS YP_003037497.1 253774666 8156215 3445330..3446421 1 NC_012947.1 transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; lac repressor 3446421 lacI 8156215 lacI Escherichia coli 'BL21-Gold(DE3)pLysS AG' lac repressor YP_003037497.1 3445330 D 866768 CDS YP_003037498.1 253774667 8156216 3446544..3449618 1 NC_012947.1 forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; beta-D-galactosidase 3449618 lacZ 8156216 lacZ Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-D-galactosidase YP_003037498.1 3446544 D 866768 CDS YP_003037499.1 253774668 8156217 3449670..3450923 1 NC_012947.1 lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; galactoside permease 3450923 lacY 8156217 lacY Escherichia coli 'BL21-Gold(DE3)pLysS AG' galactoside permease YP_003037499.1 3449670 D 866768 CDS YP_003037500.1 253774669 8156218 3450980..3451600 1 NC_012947.1 transfers acetyl group from acetyl-CoA to the 6-hydroxyl of galactopyranosides; exact physiological role is unknown; galactoside O-acetyltransferase 3451600 lacA 8156218 lacA Escherichia coli 'BL21-Gold(DE3)pLysS AG' galactoside O-acetyltransferase YP_003037500.1 3450980 D 866768 CDS YP_003037501.1 253774670 8156219 complement(3451703..3452857) 1 NC_012947.1 MFS transporter family member induced in the presence of cyanate as part of a 3 gene operon; not essential; cyanate transporter 3452857 cynX 8156219 cynX Escherichia coli 'BL21-Gold(DE3)pLysS AG' cyanate transporter YP_003037501.1 3451703 R 866768 CDS YP_003037502.1 253774671 8156220 complement(3452890..3453360) 1 NC_012947.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 3453360 8156220 ECBD_3317 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cyanate hydratase YP_003037502.1 3452890 R 866768 CDS YP_003037503.1 253774672 8156221 complement(3453391..3454050) 1 NC_012947.1 PFAM: carbonic anhydrase; carbonate dehydratase 3454050 8156221 ECBD_3318 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbonate dehydratase YP_003037503.1 3453391 R 866768 CDS YP_003037504.1 253774673 8156222 3454159..3455058 1 NC_012947.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source; DNA-binding transcriptional regulator CynR 3455058 8156222 ECBD_3319 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator CynR YP_003037504.1 3454159 D 866768 CDS YP_003037505.1 253774674 8156223 complement(3455395..3456678) 1 NC_012947.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3456678 8156223 ECBD_3320 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytosine deaminase YP_003037505.1 3455395 R 866768 CDS YP_003037506.1 253774675 8156224 complement(3456668..3457927) 1 NC_012947.1 TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; cytosine permease 3457927 codB 8156224 codB Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytosine permease YP_003037506.1 3456668 R 866768 CDS YP_003037507.1 253774676 8156225 complement(3458163..3460049) 1 NC_012947.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 3460049 prpE 8156225 prpE Escherichia coli 'BL21-Gold(DE3)pLysS AG' propionyl-CoA synthetase YP_003037507.1 3458163 R 866768 CDS YP_003037508.1 253774677 8156226 complement(3460089..3461540) 1 NC_012947.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 3461540 prpD 8156226 prpD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-methylcitrate dehydratase YP_003037508.1 3460089 R 866768 CDS YP_003037509.1 253774678 8156227 complement(3461574..3462743) 1 NC_012947.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 3462743 8156227 ECBD_3324 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methylcitrate synthase YP_003037509.1 3461574 R 866768 CDS YP_003037510.1 253774679 8156228 3462791..3463237 1 NC_012947.1 KEGG: hypothetical protein; hypothetical protein 3463237 8156228 ECBD_3325 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037510.1 3462791 D 866768 CDS YP_003037511.1 253774680 8156229 complement(3463183..3464073) 1 NC_012947.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 3464073 prpB 8156229 prpB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-methylisocitrate lyase YP_003037511.1 3463183 R 866768 CDS YP_003037512.1 253774681 8156230 3464312..3465898 1 NC_012947.1 TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; SMART: ATPase AAA; proprionate catabolism activator, Fis family 3465898 8156230 ECBD_3327 Escherichia coli 'BL21-Gold(DE3)pLysS AG' proprionate catabolism activator, Fis family YP_003037512.1 3464312 D 866768 CDS YP_003037513.1 253774682 8156231 complement(3465996..3466271) 1 NC_012947.1 PFAM: protein of unknown function DUF1471; hypothetical protein 3466271 8156231 ECBD_3328 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037513.1 3465996 R 866768 CDS YP_003037514.1 253774683 8156232 3466457..3467089 1 NC_012947.1 TIGRFAM: homoserine/threonine efflux pump; PFAM: lysine exporter protein (LYSE/YGGA); homoserine/threonine efflux pump 3467089 8156232 ECBD_3329 Escherichia coli 'BL21-Gold(DE3)pLysS AG' homoserine/threonine efflux pump YP_003037514.1 3466457 D 866768 CDS YP_003037515.1 253774684 8156233 complement(3467106..3467351) 1 NC_012947.1 KEGG: ssn:SSON_0303 hypothetical protein; hypothetical protein 3467351 8156233 ECBD_3330 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037515.1 3467106 R 866768 CDS YP_003037516.1 253774685 8156235 complement(3467764..3468579) 1 NC_012947.1 KEGG: ssn:SSON_0306 hypothetical protein; hypothetical protein 3468579 8156235 ECBD_3331 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037516.1 3467764 R 866768 CDS YP_003037517.1 253774686 8156236 complement(3468823..3469872) 1 NC_012947.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein 3469872 8156236 ECBD_3332 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase zinc-binding domain protein YP_003037517.1 3468823 R 866768 CDS YP_003037518.1 253774687 8156237 complement(3470249..3471631) 1 NC_012947.1 metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; deaminase 3471631 8156237 ECBD_3333 Escherichia coli 'BL21-Gold(DE3)pLysS AG' deaminase YP_003037518.1 3470249 R 866768 CDS YP_003037519.1 253774688 8156238 complement(3471641..3472591) 1 NC_012947.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: elf:LF82_2518 carbamate kinase-like protein YahI; carbamate kinase 3472591 8156238 ECBD_3334 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbamate kinase YP_003037519.1 3471641 R 866768 CDS YP_003037520.1 253774689 8156239 complement(3472667..3472987) 1 NC_012947.1 KEGG: hypothetical protein; hypothetical protein 3472987 8156239 ECBD_3335 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037520.1 3472667 R 866768 CDS YP_003037521.1 253774690 8156240 complement(3473013..3474431) 1 NC_012947.1 PFAM: protein of unknown function DUF1116; KEGG: elf:LF82_2517 uncharacterized protein YahG; hypothetical protein 3474431 8156240 ECBD_3336 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037521.1 3473013 R 866768 CDS YP_003037522.1 253774691 8156241 complement(3474431..3475978) 1 NC_012947.1 PFAM: FdrA family protein; KEGG: ssn:SSON_0312 oxidoreductase subunit; FdrA family protein 3475978 8156241 ECBD_3337 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FdrA family protein YP_003037522.1 3474431 R 866768 CDS YP_003037523.1 253774692 8156242 complement(3475968..3476831) 1 NC_012947.1 KEGG: ssn:SSON_0313 hypothetical protein; hypothetical protein 3476831 8156242 ECBD_3338 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037523.1 3475968 R 866768 CDS YP_003037524.1 253774693 8156243 complement(3476871..3477476) 1 NC_012947.1 PFAM: ankyrin; ankyrin 3477476 8156243 ECBD_3339 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ankyrin YP_003037524.1 3476871 R 866768 CDS YP_003037525.1 253774694 8156244 3477734..3478231 1 NC_012947.1 PFAM: protein of unknown function DUF1097; hypothetical protein 3478231 8156244 ECBD_3340 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037525.1 3477734 D 866768 CDS YP_003037526.1 253774695 8156245 3478323..3479255 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; LysR family transcriptional regulator 3479255 8156245 ECBD_3341 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003037526.1 3478323 D 866768 CDS YP_003037527.1 253774696 8156246 complement(3479297..3480385) 1 NC_012947.1 PFAM: EAL domain protein; regulatory protein LuxR; SMART: EAL domain protein; regulatory protein LuxR; KEGG: elf:LF82_2511 uncharacterized protein YahA; diguanylate phosphodiesterase 3480385 8156246 ECBD_3342 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diguanylate phosphodiesterase YP_003037527.1 3479297 R 866768 CDS YP_003037528.1 253774697 8156247 3480705..3480890 1 NC_012947.1 hypothetical protein 3480890 8156247 ECBD_3343 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037528.1 3480705 D 866768 CDS YP_003037529.1 253774698 8156248 complement(3481260..3483293) 1 NC_012947.1 proton-motive-force-driven choline transporter; choline transporter BetT 3483293 8156248 ECBD_3344 Escherichia coli 'BL21-Gold(DE3)pLysS AG' choline transporter BetT YP_003037529.1 3481260 R 866768 CDS YP_003037530.1 253774699 8156249 3483422..3484009 1 NC_012947.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 3484009 8156249 ECBD_3345 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator BetI YP_003037530.1 3483422 D 866768 CDS YP_003037531.1 253774700 8156250 3484023..3485495 1 NC_012947.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 3485495 8156250 ECBD_3346 Escherichia coli 'BL21-Gold(DE3)pLysS AG' betaine aldehyde dehydrogenase YP_003037531.1 3484023 D 866768 CDS YP_003037532.1 253774701 8156251 3485509..3487179 1 NC_012947.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 3487179 8156251 ECBD_3347 Escherichia coli 'BL21-Gold(DE3)pLysS AG' choline dehydrogenase YP_003037532.1 3485509 D 866768 CDS YP_003037533.1 253774702 8156252 3487392..3488060 1 NC_012947.1 KEGG: sfv:SFV_0321 hypothetical protein; hypothetical protein 3488060 8156252 ECBD_3348 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037533.1 3487392 D 866768 CDS YP_003037534.1 253774703 8156253 complement(3488303..3488998) 1 NC_012947.1 PFAM: protein of unknown function DUF162; KEGG: sbc:SbBS512_E0257 hypothetical protein; hypothetical protein 3488998 8156253 ECBD_3349 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037534.1 3488303 R 866768 CDS YP_003037535.1 253774704 8156254 complement(3488991..3490418) 1 NC_012947.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: sfv:SFV_0318 hypothetical protein; iron-sulfur cluster binding protein 3490418 8156254 ECBD_3350 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-sulfur cluster binding protein YP_003037535.1 3488991 R 866768 CDS YP_003037536.1 253774705 8156255 complement(3490429..3491148) 1 NC_012947.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ssn:SSON_0318 dehydrogenase subunit; hypothetical protein 3491148 8156255 ECBD_3351 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037536.1 3490429 R 866768 CDS YP_003037537.1 253774706 8156256 3491347..3491517 1 NC_012947.1 hypothetical protein 3491517 8156256 ECBD_3352 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037537.1 3491347 D 866768 CDS YP_003037538.1 253774707 8160051 complement(3491675..3492529) 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; AraC family transcriptional regulator 3492529 8160051 ECBD_3353 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003037538.1 3491675 R 866768 CDS YP_003037539.1 253774708 8160052 3492755..3494080 1 NC_012947.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 3494080 8160052 ECBD_3354 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyridine nucleotide-disulfide oxidoreductase YP_003037539.1 3492755 D 866768 CDS YP_003037540.1 253774709 8160053 3494189..3494425 1 NC_012947.1 PFAM: protein of unknown function DUF1471; hypothetical protein 3494425 8160053 ECBD_3355 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037540.1 3494189 D 866768 CDS YP_003037541.1 253774710 8160054 3494437..3495030 1 NC_012947.1 PFAM: protein of unknown function DUF417; KEGG: ssn:SSON_0322 hypothetical protein; hypothetical protein 3495030 8160054 ECBD_3356 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037541.1 3494437 D 866768 CDS YP_003037542.1 253774711 8160055 3495621..3496472 1 NC_012947.1 PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: elf:LF82_3510 uncharacterized HTH-type transcriptional regulator; AraC family transcriptional regulator 3496472 8160055 ECBD_3357 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003037542.1 3495621 D 866768 CDS YP_003037543.1 253774712 8160056 complement(3496612..3497844) 1 NC_012947.1 KEGG: elf:LF82_p054 adhesin; hypothetical protein 3497844 8160056 ECBD_3358 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037543.1 3496612 R 866768 CDS YP_003037544.1 253774713 8160057 3498959..3499060 1 NC_012947.1 hypothetical protein 3499060 8160057 ECBD_3359 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037544.1 3498959 D 866768 CDS YP_003037545.1 253774714 8160058 3499421..3499687 1 NC_012947.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 3499687 rpmE2 8160058 rpmE2 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L31 type B YP_003037545.1 3499421 D 866768 CDS YP_003037546.1 253774715 8160059 3499687..3499827 1 NC_012947.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 3499827 rpmJ 8160059 rpmJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L36 YP_003037546.1 3499687 D 866768 CDS YP_003037547.1 253774716 8160060 complement(3499862..3500089) 1 NC_012947.1 hypothetical protein 3500089 8160060 ECBD_3362 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037547.1 3499862 R 866768 CDS YP_003037548.1 253774717 8160061 3500912..3501454 1 NC_012947.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sbo:SBO_0225 regulator; LuxR family transcriptional regulator 3501454 8160061 ECBD_3363 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LuxR family transcriptional regulator YP_003037548.1 3500912 D 866768 CDS YP_003037549.1 253774718 8160062 3501480..3502115 1 NC_012947.1 KEGG: sbo:SBO_0226 hypothetical protein; hypothetical protein 3502115 8160062 ECBD_3364 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037549.1 3501480 D 866768 CDS YP_003037550.1 253774719 8160063 3502173..3502841 1 NC_012947.1 KEGG: sbo:SBO_0227 hypothetical protein; hypothetical protein 3502841 8160063 ECBD_3365 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037550.1 3502173 D 866768 CDS YP_003037551.1 253774720 8160064 3502867..3505392 1 NC_012947.1 hypothetical protein 3505392 8160064 ECBD_3366 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037551.1 3502867 D 866768 CDS YP_003037552.1 253774721 8160065 3505382..3507025 1 NC_012947.1 KEGG: elf:LF82_2509 uncharacterized protein YagW; hypothetical protein 3507025 8160065 ECBD_3367 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037552.1 3505382 D 866768 CDS YP_003037553.1 253774722 8160066 3506994..3507704 1 NC_012947.1 hypothetical protein 3507704 8160066 ECBD_3368 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037553.1 3506994 D 866768 CDS YP_003037554.1 253774723 8160067 3508017..3508346 1 NC_012947.1 PFAM: protein of unknown function UPF0153; KEGG: elf:LF82_3519 uncharacterized protein YkgJ; hypothetical protein 3508346 8160067 ECBD_3369 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037554.1 3508017 D 866768 CDS YP_003037555.1 253774724 8160068 complement(3508593..3509207) 1 NC_012947.1 PFAM: protein of unknown function DUF1440; hypothetical protein 3509207 8160068 ECBD_3370 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037555.1 3508593 R 866768 CDS YP_003037556.1 253774725 8160069 3509624..3510313 1 NC_012947.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: esa:ESA_04143 hypothetical protein; xanthine dehydrogenase iron-sulfur-binding subunit 3510313 8160069 ECBD_3371 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine dehydrogenase iron-sulfur-binding subunit YP_003037556.1 3509624 D 866768 CDS YP_003037557.1 253774726 8160070 3510310..3511266 1 NC_012947.1 PFAM: molybdopterin dehydrogenase FAD-binding; molybdopterin dehydrogenase FAD-binding 3511266 8160070 ECBD_3372 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin dehydrogenase FAD-binding YP_003037557.1 3510310 D 866768 CDS YP_003037558.1 253774727 8160071 3511263..3513461 1 NC_012947.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding 3513461 8160071 ECBD_3373 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_003037558.1 3511263 D 866768 CDS YP_003037559.1 253774728 8160072 3513471..3514427 1 NC_012947.1 PFAM: protein of unknown function DUF182; KEGG: esa:ESA_04147 hypothetical protein; hypothetical protein 3514427 8160072 ECBD_3374 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037559.1 3513471 D 866768 CDS YP_003037560.1 253774729 8160073 3514406..3514816 1 NC_012947.1 KEGG: smd:Smed_5891 LysR family transcriptional regulator; hypothetical protein 3514816 8160073 ECBD_3375 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037560.1 3514406 D 866768 CDS YP_003037561.1 253774730 8160075 complement(3515133..3516386) 1 NC_012947.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3516386 proA 8160075 proA Escherichia coli 'BL21-Gold(DE3)pLysS AG' gamma-glutamyl phosphate reductase YP_003037561.1 3515133 R 866768 CDS YP_003037562.1 253774731 8160076 complement(3516398..3517501) 1 NC_012947.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 3517501 8160076 ECBD_3377 Escherichia coli 'BL21-Gold(DE3)pLysS AG' gamma-glutamyl kinase YP_003037562.1 3516398 R 866768 CDS YP_003037563.1 253774732 8160077 3517789..3518826 1 NC_012947.1 PFAM: porin Gram-negative type; KEGG: sbo:SBO_0247 outer membrane phosphoporin protein E; outer membrane phosphoporin protein E 3518826 8160077 ECBD_3378 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane phosphoporin protein E YP_003037563.1 3517789 D 866768 CDS YP_003037564.1 253774733 8160078 complement(3518837..3519340) 1 NC_012947.1 PFAM: IS1 transposase; IS1 transposase 3519340 8160078 ECBD_3379 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037564.1 3518837 R 866768 CDS YP_003037565.1 253774734 8160079 complement(3519259..3519534) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 3519534 8160079 ECBD_3380 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037565.1 3519259 R 866768 CDS YP_003037566.1 253774735 8160080 complement(3519660..3520061) 1 NC_012947.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 3520061 8160080 ECBD_3381 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator Crl YP_003037566.1 3519660 R 866768 CDS YP_003037567.1 253774736 8160081 complement(3520119..3521363) 1 NC_012947.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 3521363 frsA 8160081 frsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' fermentation/respiration switch protein YP_003037567.1 3520119 R 866768 CDS YP_003037568.1 253774737 8160082 complement(3521455..3521913) 1 NC_012947.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 3521913 8160082 ECBD_3383 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine-guanine phosphoribosyltransferase YP_003037568.1 3521455 R 866768 CDS YP_003037569.1 253774738 8160083 3522174..3523631 1 NC_012947.1 KEGG: sbc:SbBS512_E0234 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase dimerisation domain protein; peptidase M20; aminoacyl-histidine dipeptidase 3523631 8160083 ECBD_3384 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminoacyl-histidine dipeptidase YP_003037569.1 3522174 D 866768 CDS YP_003037570.1 253774739 8160084 complement(3523688..3524188) 1 NC_012947.1 similar to release factor 1 and 2; peptide chain release factor-like protein 3524188 prfH 8160084 prfH Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide chain release factor-like protein YP_003037570.1 3523688 R 866768 CDS YP_003037571.1 253774740 8160085 complement(3524157..3524423) 1 NC_012947.1 KEGG: sdy:SDY_0482 hypothetical protein; hypothetical protein 3524423 8160085 ECBD_3386 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037571.1 3524157 R 866768 CDS YP_003037572.1 253774741 8160086 complement(3524657..3525109) 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: efe:EFER_2746 acyltransferase with acyl-CoA N-acyltransferase domain; hypothetical protein 3525109 8160086 ECBD_3387 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037572.1 3524657 R 866768 CDS YP_003037573.1 253774742 8160087 complement(3525119..3525517) 1 NC_012947.1 YafO overproduction induces toxicity; it is believed to be the toxin of a toxin-antitoxin pair; unknown function; toxin YafO 3525517 8160087 ECBD_3388 Escherichia coli 'BL21-Gold(DE3)pLysS AG' toxin YafO YP_003037573.1 3525119 R 866768 CDS YP_003037574.1 253774743 8160088 complement(3525520..3525813) 1 NC_012947.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: efe:EFER_2748 antitoxin of the YafO-YafN toxin-antitoxin system; antitoxin of the YafO-YafN toxin-antitoxin system 3525813 8160088 ECBD_3389 Escherichia coli 'BL21-Gold(DE3)pLysS AG' antitoxin of the YafO-YafN toxin-antitoxin system YP_003037574.1 3525520 R 866768 CDS YP_003037575.1 253774744 8160089 complement(3525865..3526920) 1 NC_012947.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3526920 8160089 ECBD_3390 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase IV YP_003037575.1 3525865 R 866768 CDS YP_003037576.1 253774745 8160090 complement(3526991..3527626) 1 NC_012947.1 PFAM: OmpA/MotB domain protein; KEGG: ssn:SSON_0272 hypothetical protein; hypothetical protein 3527626 8160090 ECBD_3391 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037576.1 3526991 R 866768 CDS YP_003037577.1 253774746 8160091 3527721..3529460 1 NC_012947.1 PFAM: type III secretion FHIPEP protein; KEGG: ssn:SSON_0273 flagellar biosynthesis; type III secretion FHIPEP protein 3529460 8160091 ECBD_3392 Escherichia coli 'BL21-Gold(DE3)pLysS AG' type III secretion FHIPEP protein YP_003037577.1 3527721 D 866768 CDS YP_003037578.1 253774747 8160092 complement(3529676..3530173) 1 NC_012947.1 KEGG: ssn:SSON_0271 hypothetical protein; hypothetical protein 3530173 8160092 ECBD_3393 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037578.1 3529676 R 866768 CDS YP_003037579.1 253774748 8160093 complement(3530349..3530975) 1 NC_012947.1 PFAM: NLP/P60 protein; KEGG: ssn:SSON_0269 lipoprotein; NLP/P60 protein 3530975 8160093 ECBD_3394 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NLP/P60 protein YP_003037579.1 3530349 R 866768 CDS YP_003037580.1 253774749 8160094 3531013..3531180 1 NC_012947.1 hypothetical protein 3531180 8160094 ECBD_3395 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037580.1 3531013 D 866768 CDS YP_003037581.1 253774750 8160095 3531308..3531568 1 NC_012947.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: ssn:SSON_0268 damage-inducible protein J; addiction module antitoxin, RelB/DinJ family 3531568 8160095 ECBD_3396 Escherichia coli 'BL21-Gold(DE3)pLysS AG' addiction module antitoxin, RelB/DinJ family YP_003037581.1 3531308 D 866768 CDS YP_003037582.1 253774751 8160096 3531571..3531849 1 NC_012947.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: sdy:SDY_0251 hypothetical protein; addiction module toxin, RelE/StbE family 3531849 8160096 ECBD_3397 Escherichia coli 'BL21-Gold(DE3)pLysS AG' addiction module toxin, RelE/StbE family YP_003037582.1 3531571 D 866768 CDS YP_003037583.1 253774752 8160097 3532005..3532745 1 NC_012947.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ssn:SSON_0266 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3532745 8160097 ECBD_3398 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ErfK/YbiS/YcfS/YnhG family protein YP_003037583.1 3532005 D 866768 CDS YP_003037584.1 253774753 8160098 complement(3532716..3533483) 1 NC_012947.1 PFAM: glutamine amidotransferase class-II; KEGG: sfv:SFV_0305 amidotransferase; glutamine amidotransferase class-II 3533483 8160098 ECBD_3399 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamine amidotransferase class-II YP_003037584.1 3532716 R 866768 CDS YP_003037585.1 253774754 8160099 complement(3533689..3534267) 1 NC_012947.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 3534267 gmhA 8160099 gmhA Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoheptose isomerase YP_003037585.1 3533689 R 866768 CDS YP_003037586.1 253774755 8160100 3534507..3536951 1 NC_012947.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3536951 fadE 8160100 fadE Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyl-CoA dehydrogenase YP_003037586.1 3534507 D 866768 CDS YP_003037587.1 253774756 8160101 complement(3536994..3537467) 1 NC_012947.1 inactivates vertebrate C-type lysozyme; C-lysozyme inhibitor 3537467 8160101 ECBD_3402 Escherichia coli 'BL21-Gold(DE3)pLysS AG' C-lysozyme inhibitor YP_003037587.1 3536994 R 866768 CDS YP_003037588.1 253774757 8160102 3537621..3538391 1 NC_012947.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbc:SbBS512_E0215 hydrolase, carbon-nitrogen family; hypothetical protein 3538391 8160102 ECBD_3403 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037588.1 3537621 D 866768 CDS YP_003037589.1 253774758 8160103 complement(3538432..3539568) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 receptor; transposase IS4 family protein 3539568 8160103 ECBD_3404 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003037589.1 3538432 R 866768 CDS YP_003037590.1 253774759 8160104 complement(3539999..3540352) 1 NC_012947.1 KEGG: sea:SeAg_B4436 hypothetical protein; hypothetical protein 3540352 8160104 ECBD_3405 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037590.1 3539999 R 866768 CDS YP_003037591.1 253774760 8160105 complement(3540372..3540875) 1 NC_012947.1 PFAM: IS1 transposase; IS1 transposase 3540875 8160105 ECBD_3406 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037591.1 3540372 R 866768 CDS YP_003037592.1 253774761 8160106 complement(3540794..3541069) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 3541069 8160106 ECBD_3407 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037592.1 3540794 R 866768 CDS YP_003037593.1 253774762 8160107 complement(3541335..3542120) 1 NC_012947.1 KEGG: ssn:SSON_0231 aminopeptidase; aminopeptidase 3542120 8160107 ECBD_3408 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminopeptidase YP_003037593.1 3541335 R 866768 CDS YP_003037594.1 253774763 8160109 complement(3542659..3543399) 1 NC_012947.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3543399 8160109 ECBD_3409 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunit epsilon YP_003037594.1 3542659 R 866768 CDS YP_003037595.1 253774764 8160110 3543455..3543922 1 NC_012947.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 3543922 rnhA 8160110 rnhA Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease H YP_003037595.1 3543455 D 866768 CDS YP_003037596.1 253774765 8160111 complement(3543919..3544641) 1 NC_012947.1 PFAM: methyltransferase type 11; KEGG: sbc:SbBS512_E0210 methyltransferase; methyltransferase type 11 3544641 8160111 ECBD_3411 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase type 11 YP_003037596.1 3543919 R 866768 CDS YP_003037597.1 253774766 8160112 3544675..3545430 1 NC_012947.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 3545430 8160112 ECBD_3412 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydroxyacylglutathione hydrolase YP_003037597.1 3544675 D 866768 CDS YP_003037598.1 253774767 8160113 3545502..3546860 1 NC_012947.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D 3546860 mltD 8160113 mltD Escherichia coli 'BL21-Gold(DE3)pLysS AG' membrane-bound lytic murein transglycosylase D YP_003037598.1 3545502 D 866768 CDS YP_003037599.1 253774768 8160114 complement(3546908..3547531) 1 NC_012947.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sbc:SbBS512_E0206 methyltransferase, UbiE/COQ5 family; methyltransferase type 11 3547531 8160114 ECBD_3414 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase type 11 YP_003037599.1 3546908 R 866768 CDS YP_003037600.1 253774769 8160115 complement(3547535..3548314) 1 NC_012947.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: sbc:SbBS512_E0205 endonuclease/exonuclease/phosphatase family protein; hypothetical protein 3548314 8160115 ECBD_3415 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037600.1 3547535 R 866768 CDS YP_003037601.1 253774770 8160116 3548576..3549490 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_0222 transcriptional regulator LysR-type; LysR family transcriptional regulator 3549490 8160116 ECBD_3416 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003037601.1 3548576 D 866768 CDS YP_003037602.1 253774771 8160117 complement(3549487..3550290) 1 NC_012947.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 3550290 dkgB 8160117 dkgB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2,5-diketo-D-gluconate reductase B YP_003037602.1 3549487 R 866768 CDS YP_003037603.1 253774772 8160124 complement(3556138..3556710) 1 NC_012947.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 3556710 8160124 ECBD_3418 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D,D-heptose 1,7-bisphosphate phosphatase YP_003037603.1 3556138 R 866768 CDS YP_003037604.1 253774773 8160125 3556898..3557929 1 NC_012947.1 part of the metNIQ transporter for methionine; DL-methionine transporter ATP-binding subunit 3557929 metN 8160125 metN Escherichia coli 'BL21-Gold(DE3)pLysS AG' DL-methionine transporter ATP-binding subunit YP_003037604.1 3556898 D 866768 CDS YP_003037605.1 253774774 8160126 3557922..3558575 1 NC_012947.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease subunit 3558575 8160126 ECBD_3420 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DL-methionine transporter permease subunit YP_003037605.1 3557922 D 866768 CDS YP_003037606.1 253774775 8160127 3558615..3559430 1 NC_012947.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: sbc:SbBS512_E0191 D-methionine ABC transporter periplasmic D-methionine-binding lipoprotein; DL-methionine transporter substrate-binding subunit 3559430 metQ 8160127 metQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' DL-methionine transporter substrate-binding subunit YP_003037606.1 3558615 D 866768 CDS YP_003037607.1 253774776 8160128 3559548..3559952 1 NC_012947.1 KEGG: sdy:SDY_0215 outer membrane lipoprotein; outer membrane lipoprotein 3559952 rcsF 8160128 rcsF Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein YP_003037607.1 3559548 D 866768 CDS YP_003037608.1 253774777 8160129 3559949..3560656 1 NC_012947.1 PFAM: protein of unknown function UPF0066; KEGG: ssn:SSON_0209 hypothetical protein; hypothetical protein 3560656 8160129 ECBD_3423 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037608.1 3559949 D 866768 CDS YP_003037609.1 253774778 8156579 3560767..3562485 1 NC_012947.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3562485 8156579 ECBD_3424 Escherichia coli 'BL21-Gold(DE3)pLysS AG' prolyl-tRNA synthetase YP_003037609.1 3560767 D 866768 CDS YP_003037610.1 253774779 8156580 3562538..3563362 1 NC_012947.1 KEGG: sbc:SbBS512_E0187 lipoprotein; hypothetical protein 3563362 8156580 ECBD_3425 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037610.1 3562538 D 866768 CDS YP_003037611.1 253774780 8156581 complement(3563562..3564272) 1 NC_012947.1 PFAM: copper resistance lipoprotein NlpE; KEGG: sbc:SbBS512_E0186 copper homeostasis protein CutF; lipoprotein involved with copper homeostasis and adhesion 3564272 8156581 ECBD_3426 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein involved with copper homeostasis and adhesion YP_003037611.1 3563562 R 866768 CDS YP_003037612.1 253774781 8156582 complement(3564286..3564708) 1 NC_012947.1 PFAM: class I peptide chain release factor; KEGG: sbc:SbBS512_E0185 peptidyl-tRNA hydrolase domain protein; peptidyl-tRNA hydrolase domain protein 3564708 8156582 ECBD_3427 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidyl-tRNA hydrolase domain protein YP_003037612.1 3564286 R 866768 CDS YP_003037613.1 253774782 8157745 complement(3564705..3565250) 1 NC_012947.1 PFAM: YaeQ family protein; KEGG: sfv:SFV_0174 hypothetical protein; YaeQ family protein 3565250 8157745 ECBD_3428 Escherichia coli 'BL21-Gold(DE3)pLysS AG' YaeQ family protein YP_003037613.1 3564705 R 866768 CDS YP_003037614.1 253774783 8157746 3565416..3565616 1 NC_012947.1 PFAM: protein of unknown function UPF0253; KEGG: sdy:SDY_0208 hypothetical protein; hypothetical protein 3565616 8157746 ECBD_3429 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037614.1 3565416 D 866768 CDS YP_003037615.1 253774784 8157747 3565603..3565863 1 NC_012947.1 Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator 3565863 8157747 ECBD_3430 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Rho-binding antiterminator YP_003037615.1 3565603 D 866768 CDS YP_003037616.1 253774785 8157748 complement(3565912..3567210) 1 NC_012947.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 3567210 tilS 8157748 tilS Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA(Ile)-lysidine synthetase YP_003037616.1 3565912 R 866768 CDS YP_003037617.1 253774786 8157749 complement(3567275..3567664) 1 NC_012947.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sbc:SbBS512_E0180 glyoxylase family protein; hypothetical protein 3567664 8157749 ECBD_3432 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037617.1 3567275 R 866768 CDS YP_003037618.1 253774787 8157750 complement(3567721..3569862) 1 NC_012947.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ssn:SSON_0199 lysine decarboxylase 2, constitutive; lysine decarboxylase 3569862 8157750 ECBD_3433 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysine decarboxylase YP_003037618.1 3567721 R 866768 CDS YP_003037619.1 253774788 8157751 complement(3569961..3570920) 1 NC_012947.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 3570920 8157751 ECBD_3434 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_003037619.1 3569961 R 866768 CDS YP_003037620.1 253774789 8157752 complement(3570933..3574415) 1 NC_012947.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3574415 dnaE 8157752 dnaE Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunit alpha YP_003037620.1 3570933 R 866768 CDS YP_003037621.1 253774790 8157753 complement(3574452..3575048) 1 NC_012947.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 3575048 rnhB 8157753 rnhB Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease HII YP_003037621.1 3574452 R 866768 CDS YP_003037622.1 253774791 8157754 complement(3575045..3576193) 1 NC_012947.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 3576193 lpxB 8157754 lpxB Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipid-A-disaccharide synthase YP_003037622.1 3575045 R 866768 CDS YP_003037623.1 253774792 8157755 complement(3576193..3576981) 1 NC_012947.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3576981 8157755 ECBD_3438 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylglucosamine acyltransferase YP_003037623.1 3576193 R 866768 CDS YP_003037624.1 253774793 8157756 complement(3576985..3577440) 1 NC_012947.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3577440 fabZ 8157756 fabZ Escherichia coli 'BL21-Gold(DE3)pLysS AG' (3R)-hydroxymyristoyl-ACP dehydratase YP_003037624.1 3576985 R 866768 CDS YP_003037625.1 253774794 8157757 complement(3577545..3578570) 1 NC_012947.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 3578570 lpxD 8157757 lpxD Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003037625.1 3577545 R 866768 CDS YP_003037626.1 253774795 8157758 complement(3578574..3579059) 1 NC_012947.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: ssn:SSON_0190 periplasmic chaperone; periplasmic chaperone 3579059 8157758 ECBD_3441 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic chaperone YP_003037626.1 3578574 R 866768 CDS YP_003037627.1 253774796 8157759 complement(3579181..3581613) 1 NC_012947.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 3581613 8157759 ECBD_3442 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane protein assembly factor YaeT YP_003037627.1 3579181 R 866768 CDS YP_003037628.1 253774797 8157760 complement(3581643..3582995) 1 NC_012947.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 3582995 8157760 ECBD_3443 Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc metallopeptidase RseP YP_003037628.1 3581643 R 866768 CDS YP_003037629.1 253774798 8157761 complement(3583007..3583864) 1 NC_012947.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 3583864 cdsA 8157761 cdsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' CDP-diglyceride synthase YP_003037629.1 3583007 R 866768 CDS YP_003037630.1 253774799 8157762 complement(3583877..3584635) 1 NC_012947.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase 3584635 8157762 ECBD_3445 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP pyrophosphate synthase YP_003037630.1 3583877 R 866768 CDS YP_003037631.1 253774800 8157763 complement(3584824..3586020) 1 NC_012947.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3586020 8157763 ECBD_3446 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003037631.1 3584824 R 866768 CDS YP_003037632.1 253774801 8157764 complement(3586112..3586669) 1 NC_012947.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3586669 frr 8157764 frr Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosome recycling factor YP_003037632.1 3586112 R 866768 CDS YP_003037633.1 253774802 8157765 complement(3586961..3587686) 1 NC_012947.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3587686 pyrH 8157765 pyrH Escherichia coli 'BL21-Gold(DE3)pLysS AG' uridylate kinase YP_003037633.1 3586961 R 866768 CDS YP_003037634.1 253774803 8157766 complement(3587833..3588684) 1 NC_012947.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 3588684 tsf 8157766 tsf Escherichia coli 'BL21-Gold(DE3)pLysS AG' elongation factor Ts YP_003037634.1 3587833 R 866768 CDS YP_003037635.1 253774804 8157767 complement(3588942..3589667) 1 NC_012947.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3589667 rpsB 8157767 rpsB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S2 YP_003037635.1 3588942 R 866768 CDS YP_003037636.1 253774805 8157768 3590035..3590829 1 NC_012947.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3590829 8157768 ECBD_3451 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methionine aminopeptidase YP_003037636.1 3590035 D 866768 CDS YP_003037637.1 253774806 8157769 3590891..3593563 1 NC_012947.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3593563 8157769 ECBD_3452 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PII uridylyl-transferase YP_003037637.1 3590891 D 866768 CDS YP_003037638.1 253774807 8157770 3593594..3594418 1 NC_012947.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3594418 dapD 8157770 dapD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_003037638.1 3593594 D 866768 CDS YP_003037639.1 253774808 8157771 3594472..3595284 1 NC_012947.1 PFAM: metallophosphoesterase; KEGG: sbo:SBO_0153 phosphodiesterase YaeI; phosphodiesterase YaeI 3595284 8157771 ECBD_3454 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphodiesterase YaeI YP_003037639.1 3594472 D 866768 CDS YP_003037640.1 253774809 8157772 3595446..3595832 1 NC_012947.1 KEGG: ssn:SSON_0176 structural protein; hypothetical protein 3595832 8157772 ECBD_3455 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037640.1 3595446 D 866768 CDS YP_003037641.1 253774810 8157773 complement(3595921..3597078) 1 NC_012947.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 3597078 8157773 ECBD_3456 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbohydrate diacid transcriptional activator CdaR YP_003037641.1 3595921 R 866768 CDS YP_003037642.1 253774811 8157774 complement(3597233..3598657) 1 NC_012947.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 3598657 8157774 ECBD_3457 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine endoprotease YP_003037642.1 3597233 R 866768 CDS YP_003037643.1 253774812 8157775 complement(3598787..3600304) 1 NC_012947.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 3600304 dgt 8157775 dgt Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxyguanosinetriphosphate triphosphohydrolase YP_003037643.1 3598787 R 866768 CDS YP_003037644.1 253774813 8157776 3600388..3601086 1 NC_012947.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3601086 8157776 ECBD_3459 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_003037644.1 3600388 D 866768 CDS YP_003037645.1 253774814 8157777 3601079..3601879 1 NC_012947.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 3601879 8157777 ECBD_3460 Escherichia coli 'BL21-Gold(DE3)pLysS AG' vitamin B12-transporter protein BtuF YP_003037645.1 3601079 D 866768 CDS YP_003037646.1 253774815 8157778 3601917..3602540 1 NC_012947.1 PFAM: protein of unknown function UPF0126; KEGG: sbc:SbBS512_E0149 hypothetical protein; hypothetical protein 3602540 8157778 ECBD_3461 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037646.1 3601917 D 866768 CDS YP_003037647.1 253774816 8157779 complement(3602587..3602931) 1 NC_012947.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 3602931 8157779 ECBD_3462 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-sulfur cluster insertion protein ErpA YP_003037647.1 3602587 R 866768 CDS YP_003037648.1 253774817 8157780 complement(3603013..3604434) 1 NC_012947.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 3604434 8157780 ECBD_3463 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chloride channel protein YP_003037648.1 3603013 R 866768 CDS YP_003037649.1 253774818 8157781 3604659..3605939 1 NC_012947.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3605939 8157781 ECBD_3464 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate-1-semialdehyde aminotransferase YP_003037649.1 3604659 D 866768 CDS YP_003037650.1 253774819 8157782 complement(3606097..3608079) 1 NC_012947.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 3608079 8157782 ECBD_3465 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-hydroxamate transporter permease subunit YP_003037650.1 3606097 R 866768 CDS YP_003037651.1 253774820 8157783 complement(3608076..3608966) 1 NC_012947.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 3608966 8157783 ECBD_3466 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-hydroxamate transporter substrate-binding subunit YP_003037651.1 3608076 R 866768 CDS YP_003037652.1 253774821 8157784 complement(3608966..3609763) 1 NC_012947.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 3609763 8157784 ECBD_3467 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-hydroxamate transporter ATP-binding subunit YP_003037652.1 3608966 R 866768 CDS YP_003037653.1 253774822 8157786 complement(3610918..3612126) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: seh:SeHA_C4716 transposase (IS4 family); transposase IS4 family protein 3612126 8157786 ECBD_3469 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003037653.1 3610918 R 866768 CDS YP_003037654.1 253774823 8157787 complement(3613615..3616140) 1 NC_012947.1 bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 3616140 mrcB 8157787 mrcB Escherichia coli 'BL21-Gold(DE3)pLysS AG' penicillin-binding protein 1b YP_003037654.1 3613615 R 866768 CDS YP_003037655.1 253774824 8157788 complement(3616336..3618765) 1 NC_012947.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 3618765 8157788 ECBD_3471 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent RNA helicase HrpB YP_003037655.1 3616336 R 866768 CDS YP_003037656.1 253774825 8157789 3618839..3619369 1 NC_012947.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: ssn:SSON_0159 hypothetical protein; 2'-5' RNA ligase 3619369 8157789 ECBD_3472 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2'-5' RNA ligase YP_003037656.1 3618839 D 866768 CDS YP_003037657.1 253774826 8157790 3619384..3620088 1 NC_012947.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3620088 8157790 ECBD_3473 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar fermentation stimulation protein A YP_003037657.1 3619384 D 866768 CDS YP_003037658.1 253774827 8157791 3620266..3620721 1 NC_012947.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: sdy:SDY_0161 DnaK transcriptional regulator DksA; RNA polymerase-binding transcription factor 3620721 dksA 8157791 dksA Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA polymerase-binding transcription factor YP_003037658.1 3620266 D 866768 CDS YP_003037659.1 253774828 8157792 3620758..3621684 1 NC_012947.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 3621684 8157792 ECBD_3475 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamyl-Q tRNA(Asp) synthetase YP_003037659.1 3620758 D 866768 CDS YP_003037660.1 253774829 8157793 3621723..3623141 1 NC_012947.1 polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I 3623141 pcnB 8157793 pcnB Escherichia coli 'BL21-Gold(DE3)pLysS AG' poly(A) polymerase I YP_003037660.1 3621723 D 866768 CDS YP_003037661.1 253774830 8157794 3623138..3623617 1 NC_012947.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 3623617 8157794 ECBD_3477 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase YP_003037661.1 3623138 D 866768 CDS YP_003037662.1 253774831 8157795 3623987..3624571 1 NC_012947.1 PFAM: fimbrial protein; KEGG: ssn:SSON_0153 fimbrial-like protein; fimbrial protein 3624571 8157795 ECBD_3478 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037662.1 3623987 D 866768 CDS YP_003037663.1 253774832 8157796 3624676..3625416 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sbo:SBO_0126 chaperone protein EcpD; chaperone protein EcpD 3625416 8157796 ECBD_3479 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chaperone protein EcpD YP_003037663.1 3624676 D 866768 CDS YP_003037664.1 253774833 8157797 3625451..3628051 1 NC_012947.1 similar to the fimbrial usher protein PapC; outer membrane usher protein 3628051 8157797 ECBD_3480 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane usher protein YP_003037664.1 3625451 D 866768 CDS YP_003037665.1 253774834 8157798 3628068..3628637 1 NC_012947.1 KEGG: efe:EFER_0160 fimbrial-like adhesin exported protein; fimbrial-like adhesin exported protein 3628637 8157798 ECBD_3481 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial-like adhesin exported protein YP_003037665.1 3628068 D 866768 CDS YP_003037666.1 253774835 8157799 3628652..3629254 1 NC_012947.1 PFAM: fimbrial protein; KEGG: ssn:SSON_0146 fimbrial protein; fimbrial protein 3629254 8157799 ECBD_3482 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037666.1 3628652 D 866768 CDS YP_003037667.1 253774836 8157800 3629281..3629877 1 NC_012947.1 KEGG: ssn:SSON_0145 fimbrial protein; fimbrial protein 3629877 8157800 ECBD_3483 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037667.1 3629281 D 866768 CDS YP_003037668.1 253774837 8157801 3629930..3631204 1 NC_012947.1 PFAM: fimbrial protein; KEGG: elf:LF82_2474 uncharacterized fimbrial-like protein YadC; fimbrial-like adhesin protein 3631204 8157801 ECBD_3484 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial-like adhesin protein YP_003037668.1 3629930 D 866768 CDS YP_003037669.1 253774838 8157802 3631317..3632111 1 NC_012947.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3632111 panB 8157802 panB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_003037669.1 3631317 D 866768 CDS YP_003037670.1 253774839 8157803 3632123..3632974 1 NC_012947.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3632974 panC 8157803 panC Escherichia coli 'BL21-Gold(DE3)pLysS AG' pantoate--beta-alanine ligase YP_003037670.1 3632123 D 866768 CDS YP_003037671.1 253774840 8157804 complement(3633048..3633950) 1 NC_012947.1 PFAM: transposase YhgA family protein; KEGG: sfv:SFV_0122 hypothetical protein; transposase YhgA family protein 3633950 8157804 ECBD_3487 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase YhgA family protein YP_003037671.1 3633048 R 866768 CDS YP_003037672.1 253774841 8157805 3634224..3634604 1 NC_012947.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 3634604 8157805 ECBD_3488 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aspartate alpha-decarboxylase YP_003037672.1 3634224 D 866768 CDS YP_003037673.1 253774842 8157806 complement(3634608..3635837) 1 NC_012947.1 PFAM: polysaccharide deacetylase; KEGG: ssn:SSON_0138 hypothetical protein; polysaccharide deacetylase 3635837 8157806 ECBD_3489 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polysaccharide deacetylase YP_003037673.1 3634608 R 866768 CDS YP_003037674.1 253774843 8157807 complement(3635901..3636341) 1 NC_012947.1 PFAM: PTS system fructose subfamily IIA component; KEGG: sbc:SbBS512_E0122 PTS system IIA component domain protein; PTS system fructose subfamily IIA component 3636341 8157807 ECBD_3490 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system fructose subfamily IIA component YP_003037674.1 3635901 R 866768 CDS YP_003037675.1 253774844 8157808 complement(3636446..3637216) 1 NC_012947.1 PFAM: ABC transporter; KEGG: ssn:SSON_0136 hypothetical protein; ABC transporter 3637216 8157808 ECBD_3491 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003037675.1 3636446 R 866768 CDS YP_003037676.1 253774845 8157809 complement(3637213..3638139) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ssn:SSON_0135 ATP-binding component of a transporter; ABC transporter 3638139 8157809 ECBD_3492 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003037676.1 3637213 R 866768 CDS YP_003037677.1 253774846 8157810 3638248..3638910 1 NC_012947.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 3638910 8157810 ECBD_3493 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbonic anhydrase YP_003037677.1 3638248 D 866768 CDS YP_003037678.1 253774847 8157811 complement(3638951..3639499) 1 NC_012947.1 KEGG: sfv:SFV_0116 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 3639499 8157811 ECBD_3494 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypoxanthine phosphoribosyltransferase YP_003037678.1 3638951 R 866768 CDS YP_003037679.1 253774848 8157812 3639693..3642083 1 NC_012947.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 3642083 8157812 ECBD_3495 Escherichia coli 'BL21-Gold(DE3)pLysS AG' membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family YP_003037679.1 3639693 D 866768 CDS YP_003037680.1 253774849 8157813 complement(3642285..3643835) 1 NC_012947.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 3643835 8157813 ECBD_3496 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multicopper oxidase YP_003037680.1 3642285 R 866768 CDS YP_003037681.1 253774850 8157814 3644001..3644348 1 NC_012947.1 KEGG: ssn:SSON_0130 hypothetical protein; hypothetical protein 3644348 8157814 ECBD_3497 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037681.1 3644001 D 866768 CDS YP_003037682.1 253774851 8157815 3644454..3645320 1 NC_012947.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3645320 8157815 ECBD_3498 Escherichia coli 'BL21-Gold(DE3)pLysS AG' spermidine synthase YP_003037682.1 3644454 D 866768 CDS YP_003037683.1 253774852 8157816 3645336..3646130 1 NC_012947.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 3646130 8157816 ECBD_3499 Escherichia coli 'BL21-Gold(DE3)pLysS AG' S-adenosylmethionine decarboxylase YP_003037683.1 3645336 D 866768 CDS YP_003037684.1 253774853 8157817 complement(3646168..3646530) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: ssn:SSON_0127 hypothetical protein; hypothetical protein 3646530 8157817 ECBD_3500 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037684.1 3646168 R 866768 CDS YP_003037685.1 253774854 8157818 complement(3646705..3649302) 1 NC_012947.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 3649302 8157818 ECBD_3501 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_003037685.1 3646705 R 866768 CDS YP_003037686.1 253774855 8157819 3649657..3651510 1 NC_012947.1 KEGG: sbc:SbBS512_E0110 hypothetical protein; hypothetical protein 3651510 8157819 ECBD_3502 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037686.1 3649657 D 866768 CDS YP_003037687.1 253774856 8157820 complement(3651581..3653005) 1 NC_012947.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 3653005 8157820 ECBD_3503 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydrolipoamide dehydrogenase YP_003037687.1 3651581 R 866768 CDS YP_003037688.1 253774857 8157821 complement(3653330..3655222) 1 NC_012947.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 3655222 aceF 8157821 aceF Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydrolipoamide acetyltransferase YP_003037688.1 3653330 R 866768 CDS YP_003037689.1 253774858 8157822 complement(3655237..3657900) 1 NC_012947.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 3657900 aceE 8157822 aceE Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvate dehydrogenase subunit E1 YP_003037689.1 3655237 R 866768 CDS YP_003037690.1 253774859 8157823 complement(3658061..3658825) 1 NC_012947.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 3658825 pdhR 8157823 pdhR Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator PdhR YP_003037690.1 3658061 R 866768 CDS YP_003037691.1 253774860 8157824 3659369..3660739 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: efe:EFER_0132 aromatic amino acid transporter; aromatic amino acid transporter 3660739 8157824 ECBD_3507 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aromatic amino acid transporter YP_003037691.1 3659369 D 866768 CDS YP_003037692.1 253774861 8156583 complement(3660782..3661636) 1 NC_012947.1 involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 3661636 8156583 ECBD_3508 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulatory protein AmpE YP_003037692.1 3660782 R 866768 CDS YP_003037693.1 253774862 8155934 complement(3661633..3662184) 1 NC_012947.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetyl-anhydromuranmyl-L-alanine amidase 3662184 8155934 ECBD_3509 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetyl-anhydromuranmyl-L-alanine amidase YP_003037693.1 3661633 R 866768 CDS YP_003037694.1 253774863 8156584 3662272..3663165 1 NC_012947.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 3663165 8156584 ECBD_3510 Escherichia coli 'BL21-Gold(DE3)pLysS AG' quinolinate phosphoribosyltransferase YP_003037694.1 3662272 D 866768 CDS YP_003037695.1 253774864 8156585 3663368..3663808 1 NC_012947.1 KEGG: ssn:SSON_0116 major pilin subunit; major pilin subunit 3663808 8156585 ECBD_3511 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major pilin subunit YP_003037695.1 3663368 D 866768 CDS YP_003037696.1 253774865 8158155 3663818..3665203 1 NC_012947.1 PFAM: type II secretion system protein E; hypothetical protein 3665203 8158155 ECBD_3512 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037696.1 3663818 D 866768 CDS YP_003037697.1 253774866 8158243 3665193..3666395 1 NC_012947.1 PFAM: type II secretion system protein; KEGG: sbc:SbBS512_E0098 type IV pilus assembly protein PilC; type IV pilin biogenesis protein 3666395 8158243 ECBD_3513 Escherichia coli 'BL21-Gold(DE3)pLysS AG' type IV pilin biogenesis protein YP_003037697.1 3665193 D 866768 CDS YP_003037698.1 253774867 8158244 complement(3666430..3667473) 1 NC_012947.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 3667473 8158244 ECBD_3514 Escherichia coli 'BL21-Gold(DE3)pLysS AG' guanosine 5'-monophosphate oxidoreductase YP_003037698.1 3666430 R 866768 CDS YP_003037699.1 253774868 8158245 3667698..3668318 1 NC_012947.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 3668318 coaE 8158245 coaE Escherichia coli 'BL21-Gold(DE3)pLysS AG' dephospho-CoA kinase YP_003037699.1 3667698 D 866768 CDS YP_003037700.1 253774869 8158246 3668318..3669061 1 NC_012947.1 PFAM: protein of unknown function DUF1342; KEGG: ssn:SSON_0110 hypothetical protein; hypothetical protein 3669061 8158246 ECBD_3516 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037700.1 3668318 D 866768 CDS YP_003037701.1 253774870 8158247 3669071..3669268 1 NC_012947.1 PFAM: protein of unknown function DUF329; KEGG: ssn:SSON_0109 zinc-binding protein; zinc-binding protein 3669268 8158247 ECBD_3517 Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc-binding protein YP_003037701.1 3669071 D 866768 CDS YP_003037702.1 253774871 8158248 complement(3669484..3669873) 1 NC_012947.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: ssn:SSON_0107 nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP; nucleoside triphosphate pyrophosphohydrolase 3669873 8158248 ECBD_3518 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside triphosphate pyrophosphohydrolase YP_003037702.1 3669484 R 866768 CDS YP_003037703.1 253774872 8158249 complement(3669933..3672638) 1 NC_012947.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 3672638 8158249 ECBD_3519 Escherichia coli 'BL21-Gold(DE3)pLysS AG' preprotein translocase subunit SecA YP_003037703.1 3669933 R 866768 CDS YP_003037704.1 253774873 8158250 complement(3672700..3673287) 1 NC_012947.1 secM translational pause allows for the initiation of secA translation; SecA regulator SecM 3673287 8158250 ECBD_3520 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SecA regulator SecM YP_003037704.1 3672700 R 866768 CDS YP_003037705.1 253774874 8158251 complement(3673443..3674360) 1 NC_012947.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3674360 lpxC 8158251 lpxC Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_003037705.1 3673443 R 866768 CDS YP_003037706.1 253774875 8158252 complement(3674461..3675612) 1 NC_012947.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 3675612 8158252 ECBD_3522 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsZ YP_003037706.1 3674461 R 866768 CDS YP_003037707.1 253774876 8158253 complement(3675673..3676935) 1 NC_012947.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 3676935 ftsA 8158253 ftsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsA YP_003037707.1 3675673 R 866768 CDS YP_003037708.1 253774877 8158254 complement(3676932..3677762) 1 NC_012947.1 involved in septum formation; cell division protein FtsQ 3677762 8158254 ECBD_3524 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsQ YP_003037708.1 3676932 R 866768 CDS YP_003037709.1 253774878 8158255 complement(3677764..3678684) 1 NC_012947.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 3678684 ddl 8158255 ddl Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanine--D-alanine ligase YP_003037709.1 3677764 R 866768 CDS YP_003037710.1 253774879 8158256 complement(3678677..3680152) 1 NC_012947.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3680152 murC 8158256 murC Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylmuramate--L-alanine ligase YP_003037710.1 3678677 R 866768 CDS YP_003037711.1 253774880 8158257 complement(3680206..3681273) 1 NC_012947.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase 3681273 murG 8158257 murG Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase YP_003037711.1 3680206 R 866768 CDS YP_003037712.1 253774881 8158258 complement(3681270..3682514) 1 NC_012947.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 3682514 8158258 ECBD_3528 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsW YP_003037712.1 3681270 R 866768 CDS YP_003037713.1 253774882 8158259 complement(3682514..3683830) 1 NC_012947.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3683830 murD 8158259 murD Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_003037713.1 3682514 R 866768 CDS YP_003037714.1 253774883 8158260 complement(3683833..3684915) 1 NC_012947.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 3684915 mraY 8158260 mraY Escherichia coli 'BL21-Gold(DE3)pLysS AG' phospho-N-acetylmuramoyl-pentapeptide- transferase YP_003037714.1 3683833 R 866768 CDS YP_003037715.1 253774884 8158261 complement(3684909..3686267) 1 NC_012947.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: ssn:SSON_0094 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 3686267 murF 8158261 murF Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_003037715.1 3684909 R 866768 CDS YP_003037716.1 253774885 8158262 complement(3686264..3687751) 1 NC_012947.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 3687751 murE 8158262 murE Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_003037716.1 3686264 R 866768 CDS YP_003037717.1 253774886 8158263 complement(3687738..3689504) 1 NC_012947.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: sdy:SDY_0114 penicillin-binding protein 3; peptidoglycan glycosyltransferase 3689504 8158263 ECBD_3533 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidoglycan glycosyltransferase YP_003037717.1 3687738 R 866768 CDS YP_003037718.1 253774887 8158264 complement(3689520..3689885) 1 NC_012947.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 3689885 8158264 ECBD_3534 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein FtsL YP_003037718.1 3689520 R 866768 CDS YP_003037719.1 253774888 8158265 complement(3689882..3690823) 1 NC_012947.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: sbc:SbBS512_E0075 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 3690823 mraW 8158265 mraW Escherichia coli 'BL21-Gold(DE3)pLysS AG' S-adenosyl-methyltransferase MraW YP_003037719.1 3689882 R 866768 CDS YP_003037720.1 253774889 8158266 complement(3690825..3691283) 1 NC_012947.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 3691283 8158266 ECBD_3536 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein MraZ YP_003037720.1 3690825 R 866768 CDS YP_003037721.1 253774890 8158267 complement(3691885..3692889) 1 NC_012947.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 3692889 8158267 ECBD_3537 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator FruR YP_003037721.1 3691885 R 866768 CDS YP_003037722.1 253774891 8158268 complement(3693069..3693560) 1 NC_012947.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 3693560 ilvH 8158268 ilvH Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetolactate synthase 3 regulatory subunit YP_003037722.1 3693069 R 866768 CDS YP_003037723.1 253774892 8158269 complement(3693563..3695287) 1 NC_012947.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 3695287 8158269 ECBD_3539 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetolactate synthase 3 catalytic subunit YP_003037723.1 3693563 R 866768 CDS YP_003037724.1 253774893 8158270 complement(3695605..3696549) 1 NC_012947.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 3696549 leuO 8158270 leuO Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucine transcriptional activator YP_003037724.1 3695605 R 866768 CDS YP_003037725.1 253774894 8158271 3697209..3697295 1 NC_012947.1 involved in attenuation control of the leuABCD operon in leucine biosynthesis; leu operon leader peptide 3697295 8158271 ECBD_3541 Escherichia coli 'BL21-Gold(DE3)pLysS AG' leu operon leader peptide YP_003037725.1 3697209 D 866768 CDS YP_003037726.1 253774895 8158272 3697388..3698959 1 NC_012947.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 3698959 8158272 ECBD_3542 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-isopropylmalate synthase YP_003037726.1 3697388 D 866768 CDS YP_003037727.1 253774896 8158273 3698959..3700050 1 NC_012947.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3700050 8158273 ECBD_3543 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-isopropylmalate dehydrogenase YP_003037727.1 3698959 D 866768 CDS YP_003037728.1 253774897 8158274 3700053..3701453 1 NC_012947.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3701453 8158274 ECBD_3544 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isopropylmalate isomerase large subunit YP_003037728.1 3700053 D 866768 CDS YP_003037729.1 253774898 8158275 3701464..3702069 1 NC_012947.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3702069 leuD 8158275 leuD Escherichia coli 'BL21-Gold(DE3)pLysS AG' isopropylmalate isomerase small subunit YP_003037729.1 3701464 D 866768 CDS YP_003037730.1 253774899 8158276 complement(3702118..3703296) 1 NC_012947.1 TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S0067 transporter; sugar efflux transporter 3703296 8158276 ECBD_3546 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar efflux transporter YP_003037730.1 3702118 R 866768 CDS YP_003037731.1 253774900 8158277 complement(3703398..3703529) 1 NC_012947.1 KEGG: cko:CKO_03311 hypothetical protein; hypothetical protein 3703529 8158277 ECBD_3547 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037731.1 3703398 R 866768 CDS YP_003037732.1 253774901 8158278 3703618..3705273 1 NC_012947.1 activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 3705273 8158278 ECBD_3548 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator SgrR YP_003037732.1 3703618 D 866768 CDS YP_003037733.1 253774902 8158279 3705437..3706420 1 NC_012947.1 part of the thiamine and TPP transporter tbpA-thiPQ; thiamine transporter substrate binding subunit 3706420 tbpA 8158279 tbpA Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine transporter substrate binding subunit YP_003037733.1 3705437 D 866768 CDS YP_003037734.1 253774903 8158280 3706396..3708006 1 NC_012947.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 3708006 thiP 8158280 thiP Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine transporter membrane protein YP_003037734.1 3706396 D 866768 CDS YP_003037735.1 253774904 8158281 3707990..3708688 1 NC_012947.1 with TbpA and ThiP is part of the thiamine and TPP transporter; thiamine transporter ATP-binding subunit 3708688 thiQ 8158281 thiQ Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine transporter ATP-binding subunit YP_003037735.1 3707990 D 866768 CDS YP_003037736.1 253774905 8158282 complement(3708802..3709566) 1 NC_012947.1 PFAM: SNARE associated Golgi protein; KEGG: sbo:SBO_0052 hypothetical protein; hypothetical protein 3709566 8158282 ECBD_3552 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037736.1 3708802 R 866768 CDS YP_003037737.1 253774906 8158283 complement(3709652..3710530) 1 NC_012947.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; AraC family transcriptional regulator 3710530 8158283 ECBD_3553 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003037737.1 3709652 R 866768 CDS YP_003037738.1 253774907 8158284 3710869..3712569 1 NC_012947.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 3712569 8158284 ECBD_3554 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribulokinase YP_003037738.1 3710869 D 866768 CDS YP_003037739.1 253774908 8158285 3712580..3714082 1 NC_012947.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 3714082 8158285 ECBD_3555 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-arabinose isomerase YP_003037739.1 3712580 D 866768 CDS YP_003037740.1 253774909 8158286 3714367..3715062 1 NC_012947.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3715062 araD 8158286 araD Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-ribulose-5-phosphate 4-epimerase YP_003037740.1 3714367 D 866768 CDS YP_003037741.1 253774910 8158287 3715137..3717488 1 NC_012947.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 3717488 8158287 ECBD_3557 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase II YP_003037741.1 3715137 D 866768 CDS YP_003037742.1 253774911 8158288 3717653..3720559 1 NC_012947.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 3720559 8158288 ECBD_3558 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent helicase HepA YP_003037742.1 3717653 D 866768 CDS YP_003037743.1 253774912 8158289 3720571..3721230 1 NC_012947.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 3721230 8158289 ECBD_3559 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA/tRNA pseudouridine synthase A YP_003037743.1 3720571 D 866768 CDS YP_003037744.1 253774913 8158290 complement(3721347..3722162) 1 NC_012947.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 3722162 djlA 8158290 djlA Escherichia coli 'BL21-Gold(DE3)pLysS AG' Dna-J like membrane chaperone protein YP_003037744.1 3721347 R 866768 CDS YP_003037745.1 253774914 8158291 3722417..3724771 1 NC_012947.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 3724771 8158291 ECBD_3561 Escherichia coli 'BL21-Gold(DE3)pLysS AG' organic solvent tolerance protein YP_003037745.1 3722417 D 866768 CDS YP_003037746.1 253774915 8158292 3724824..3726110 1 NC_012947.1 Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA 3726110 8158292 ECBD_3562 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidyl-prolyl cis-trans isomerase SurA YP_003037746.1 3724824 D 866768 CDS YP_003037747.1 253774916 8158293 3726110..3727099 1 NC_012947.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3727099 pdxA 8158293 pdxA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxythreonine-4-phosphate dehydrogenase YP_003037747.1 3726110 D 866768 CDS YP_003037748.1 253774917 8158294 3727096..3727917 1 NC_012947.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3727917 ksgA 8158294 ksgA Escherichia coli 'BL21-Gold(DE3)pLysS AG' dimethyladenosine transferase YP_003037748.1 3727096 D 866768 CDS YP_003037749.1 253774918 8158295 3727920..3728297 1 NC_012947.1 protein associated with Co2+ and Mg2+ efflux; ApaG 3728297 apaG 8158295 apaG Escherichia coli 'BL21-Gold(DE3)pLysS AG' ApaG YP_003037749.1 3727920 D 866768 CDS YP_003037750.1 253774919 8158296 3728304..3729146 1 NC_012947.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3729146 apaH 8158296 apaH Escherichia coli 'BL21-Gold(DE3)pLysS AG' diadenosine tetraphosphatase YP_003037750.1 3728304 D 866768 CDS YP_003037751.1 253774920 8158297 complement(3729224..3729814) 1 NC_012947.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 3729814 folA 8158297 folA Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydrofolate reductase YP_003037751.1 3729224 R 866768 CDS YP_003037752.1 253774921 8158298 complement(3729895..3731757) 1 NC_012947.1 transporter that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 3731757 8158298 ECBD_3568 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione-regulated potassium-efflux system protein KefC YP_003037752.1 3729895 R 866768 CDS YP_003037753.1 253774922 8158299 complement(3731750..3732280) 1 NC_012947.1 Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 3732280 8158299 ECBD_3569 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathione-regulated potassium-efflux system ancillary protein KefF YP_003037753.1 3731750 R 866768 CDS YP_003037754.1 253774923 8158300 complement(3732388..3733719) 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; major facilitator superfamily MFS_1 3733719 8158300 ECBD_3570 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003037754.1 3732388 R 866768 CDS YP_003037755.1 253774924 8158301 complement(3733776..3734063) 1 NC_012947.1 KEGG: ssn:SSON_0052 ferredoxin; ferredoxin 3734063 8158301 ECBD_3571 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferredoxin YP_003037755.1 3733776 R 866768 CDS YP_003037756.1 253774925 8158302 complement(3734060..3735346) 1 NC_012947.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 3735346 8158302 ECBD_3572 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase FixC YP_003037756.1 3734060 R 866768 CDS YP_003037757.1 253774926 8158303 complement(3735397..3736338) 1 NC_012947.1 involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 3736338 fixB 8158303 fixB Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transfer flavoprotein FixB YP_003037757.1 3735397 R 866768 CDS YP_003037758.1 253774927 8158304 complement(3736353..3737123) 1 NC_012947.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; electron transfer flavoprotein FixA 3737123 8158304 ECBD_3574 Escherichia coli 'BL21-Gold(DE3)pLysS AG' electron transfer flavoprotein FixA YP_003037758.1 3736353 R 866768 CDS YP_003037759.1 253774928 8158305 3737597..3739111 1 NC_012947.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 3739111 8158305 ECBD_3575 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-carnitine/gamma-butyrobetaine antiporter YP_003037759.1 3737597 D 866768 CDS YP_003037760.1 253774929 8158306 3739142..3740284 1 NC_012947.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 3740284 8158306 ECBD_3576 Escherichia coli 'BL21-Gold(DE3)pLysS AG' crotonobetainyl-CoA dehydrogenase YP_003037760.1 3739142 D 866768 CDS YP_003037761.1 253774930 8158308 3741703..3743256 1 NC_012947.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ssn:SSON_0043 crotonobetaine/carnitine-CoA ligase; crotonobetaine/carnitine-CoA ligase 3743256 caiC 8158308 caiC Escherichia coli 'BL21-Gold(DE3)pLysS AG' crotonobetaine/carnitine-CoA ligase YP_003037761.1 3741703 D 866768 CDS YP_003037762.1 253774931 8158309 3743365..3744150 1 NC_012947.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 3744150 8158309 ECBD_3579 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carnitinyl-CoA dehydratase YP_003037762.1 3743365 D 866768 CDS YP_003037763.1 253774932 8158310 3744156..3744746 1 NC_012947.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 3744746 8158310 ECBD_3580 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carnitine operon protein CaiE YP_003037763.1 3744156 D 866768 CDS YP_003037764.1 253774933 8158311 complement(3744955..3745350) 1 NC_012947.1 regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; CaiF family transcriptional regulator 3745350 8158311 ECBD_3581 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CaiF family transcriptional regulator YP_003037764.1 3744955 R 866768 CDS YP_003037765.1 253774934 8158312 complement(3745612..3748833) 1 NC_012947.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3748833 carB 8158312 carB Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbamoyl phosphate synthase large subunit YP_003037765.1 3745612 R 866768 CDS YP_003037766.1 253774935 8158313 complement(3748851..3749999) 1 NC_012947.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 3749999 8158313 ECBD_3583 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbamoyl phosphate synthase small subunit YP_003037766.1 3748851 R 866768 CDS YP_003037767.1 253774936 8158314 complement(3750039..3750176) 1 NC_012947.1 KEGG: spq:SPAB_00081 hypothetical protein; hypothetical protein 3750176 8158314 ECBD_3584 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037767.1 3750039 R 866768 CDS YP_003037768.1 253774937 8158315 complement(3750455..3751276) 1 NC_012947.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3751276 8158315 ECBD_3585 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydrodipicolinate reductase YP_003037768.1 3750455 R 866768 CDS YP_003037769.1 253774938 8158316 complement(3751443..3752357) 1 NC_012947.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 3752357 8158316 ECBD_3586 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonucleoside hydrolase RihC YP_003037769.1 3751443 R 866768 CDS YP_003037770.1 253774939 8158317 complement(3752423..3753373) 1 NC_012947.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3753373 ispH 8158317 ispH Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_003037770.1 3752423 R 866768 CDS YP_003037771.1 253774940 8158318 complement(3753375..3753824) 1 NC_012947.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ssn:SSON_0033 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase FKBP-type 3753824 8158318 ECBD_3588 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidylprolyl isomerase FKBP-type YP_003037771.1 3753375 R 866768 CDS YP_003037772.1 253774941 8158319 complement(3753949..3754443) 1 NC_012947.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3754443 lspA 8158319 lspA Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein signal peptidase YP_003037772.1 3753949 R 866768 CDS YP_003037773.1 253774942 8158320 complement(3754443..3757259) 1 NC_012947.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 3757259 ileS 8158320 ileS Escherichia coli 'BL21-Gold(DE3)pLysS AG' isoleucyl-tRNA synthetase YP_003037773.1 3754443 R 866768 CDS YP_003037774.1 253774943 8158321 complement(3757302..3758243) 1 NC_012947.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 3758243 8158321 ECBD_3591 Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional riboflavin kinase/FMN adenylyltransferase YP_003037774.1 3757302 R 866768 CDS YP_003037775.1 253774944 8158322 complement(3758251..3758469) 1 NC_012947.1 KEGG: sdy:SDY_0046 hypothetical protein; hypothetical protein 3758469 8158322 ECBD_3592 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037775.1 3758251 R 866768 CDS YP_003037776.1 253774945 8158323 3758572..3758835 1 NC_012947.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3758835 rpsT 8158323 rpsT Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S20 YP_003037776.1 3758572 D 866768 CDS YP_003037777.1 253774946 8156939 complement(3759679..3760182) 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 3760182 8156939 ECBD_3595 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037777.1 3759679 R 866768 CDS YP_003037778.1 253774947 8156940 complement(3760101..3760376) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 3760376 8156940 ECBD_3596 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037778.1 3760101 R 866768 CDS YP_003037779.1 253774948 8156942 3763105..3764064 1 NC_012947.1 KEGG: ssn:SSON_0023 hypothetical protein; hypothetical protein 3764064 8156942 ECBD_3598 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037779.1 3763105 D 866768 CDS YP_003037780.1 253774949 8156943 complement(3764103..3765002) 1 NC_012947.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 3765002 nhaR 8156943 nhaR Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional activator NhaR YP_003037780.1 3764103 R 866768 CDS YP_003037781.1 253774950 8156944 complement(3765068..3766234) 1 NC_012947.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 3766234 nhaA 8156944 nhaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' pH-dependent sodium/proton antiporter YP_003037781.1 3765068 R 866768 CDS YP_003037782.1 253774951 8156945 3766821..3766973 1 NC_012947.1 PFAM: Hok/gef cell toxic protein; KEGG: ssn:SSON_0016 Gef protein interferes with membrane function when in excess; Hok/gef cell toxic protein 3766973 8156945 ECBD_3601 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Hok/gef cell toxic protein YP_003037782.1 3766821 D 866768 CDS YP_003037783.1 253774952 8156946 complement(3767004..3767144) 1 NC_012947.1 hypothetical protein 3767144 8156946 ECBD_3602 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037783.1 3767004 R 866768 CDS YP_003037784.1 253774953 8156947 complement(3767167..3768279) 1 NC_012947.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 3768279 8156947 ECBD_3603 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003037784.1 3767167 R 866768 CDS YP_003037785.1 253774954 8156948 complement(3768426..3769556) 1 NC_012947.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3769556 8156948 ECBD_3604 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chaperone protein DnaJ YP_003037785.1 3768426 R 866768 CDS YP_003037786.1 253774955 8156949 complement(3769645..3771561) 1 NC_012947.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3771561 dnaK 8156949 dnaK Escherichia coli 'BL21-Gold(DE3)pLysS AG' molecular chaperone DnaK YP_003037786.1 3769645 R 866768 CDS YP_003037787.1 253774956 8156950 3771938..3772342 1 NC_012947.1 KEGG: ssn:SSON_0013 hypothetical protein; hypothetical protein 3772342 8156950 ECBD_3606 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037787.1 3771938 D 866768 CDS YP_003037788.1 253774957 8156951 3772368..3773081 1 NC_012947.1 PFAM: protein of unknown function UPF0174; KEGG: ssn:SSON_0012 hypothetical protein; hypothetical protein 3773081 8156951 ECBD_3607 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037788.1 3772368 D 866768 CDS YP_003037789.1 253774958 8156952 3773230..3773796 1 NC_012947.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: ssn:SSON_0011 hypothetical protein; hypothetical protein 3773796 8156952 ECBD_3608 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037789.1 3773230 D 866768 CDS YP_003037790.1 253774959 8156953 complement(3773831..3774418) 1 NC_012947.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 3774418 mogA 8156953 mogA Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdenum cofactor biosynthesis protein MogA YP_003037790.1 3773831 R 866768 CDS YP_003037791.1 253774960 8156954 complement(3774533..3775486) 1 NC_012947.1 KEGG: sbc:SbBS512_E0008 transaldolase; TIGRFAM: transaldolase; PFAM: transaldolase; transaldolase B 3775486 8156954 ECBD_3610 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transaldolase B YP_003037791.1 3774533 R 866768 CDS YP_003037792.1 253774961 8156955 3775765..3777195 1 NC_012947.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: elf:LF82_2462 uncharacterized transporter YaaJ; amino acid carrier protein 3777195 8156955 ECBD_3611 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid carrier protein YP_003037792.1 3775765 D 866768 CDS YP_003037793.1 253774962 8156956 3777265..3778041 1 NC_012947.1 PFAM: protein of unknown function DUF328; KEGG: sdy:SDY_0006 hypothetical protein; hypothetical protein 3778041 8156956 ECBD_3612 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037793.1 3777265 D 866768 CDS YP_003037794.1 253774963 8156957 complement(3778194..3778490) 1 NC_012947.1 KEGG: ssn:SSON_0005 hypothetical protein; hypothetical protein 3778490 8156957 ECBD_3613 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037794.1 3778194 R 866768 CDS YP_003037795.1 253774964 8156958 complement(3778703..3779989) 1 NC_012947.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3779989 8156958 ECBD_3614 Escherichia coli 'BL21-Gold(DE3)pLysS AG' threonine synthase YP_003037795.1 3778703 R 866768 CDS YP_003037796.1 253774965 8156959 complement(3779990..3780922) 1 NC_012947.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3780922 8156959 ECBD_3615 Escherichia coli 'BL21-Gold(DE3)pLysS AG' homoserine kinase YP_003037796.1 3779990 R 866768 CDS YP_003037797.1 253774966 8156960 complement(3780924..3783386) 1 NC_012947.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 3783386 thrA 8156960 thrA Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional aspartokinase I/homoserine dehydrogenase I YP_003037797.1 3780924 R 866768 CDS YP_003037798.1 253774967 8156961 complement(3783746..3784432) 1 NC_012947.1 member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 3784432 8156961 ECBD_3617 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA methyltransferase YP_003037798.1 3783746 R 866768 CDS YP_003037799.1 253774968 8156962 complement(3784832..3784972) 1 NC_012947.1 KEGG: sfx:S4705 hypothetical protein; hypothetical protein 3784972 8156962 ECBD_3618 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037799.1 3784832 R 866768 CDS YP_003037800.1 253774969 8156963 3785068..3785784 1 NC_012947.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfv:SFV_4435 two-component response regulator; two-component response regulator 3785784 8156963 ECBD_3619 Escherichia coli 'BL21-Gold(DE3)pLysS AG' two-component response regulator YP_003037800.1 3785068 D 866768 CDS YP_003037801.1 253774970 8156964 complement(3785844..3787196) 1 NC_012947.1 PFAM: inner membrane protein CreD; KEGG: sbc:SbBS512_E4948 inner membrane protein CreD; hypothetical protein 3787196 8156964 ECBD_3620 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037801.1 3785844 R 866768 CDS YP_003037802.1 253774971 8156965 complement(3787254..3788678) 1 NC_012947.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 3788678 8156965 ECBD_3621 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensory histidine kinase CreC YP_003037802.1 3787254 R 866768 CDS YP_003037803.1 253774972 8156966 complement(3788678..3789367) 1 NC_012947.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 3789367 8156966 ECBD_3622 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding response regulator CreB YP_003037803.1 3788678 R 866768 CDS YP_003037804.1 253774973 8156967 complement(3789380..3789853) 1 NC_012947.1 PFAM: CreA family protein; KEGG: sfv:SFV_4431 hypothetical protein; hypothetical protein 3789853 8156967 ECBD_3623 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037804.1 3789380 R 866768 CDS YP_003037805.1 253774974 8156968 3790064..3790933 1 NC_012947.1 PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sfv:SFV_4430 right origin-binding protein; AraC family transcriptional regulator 3790933 8156968 ECBD_3624 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003037805.1 3790064 D 866768 CDS YP_003037806.1 253774975 8156969 complement(3790930..3791577) 1 NC_012947.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 3791577 8156969 ECBD_3625 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglycerate mutase YP_003037806.1 3790930 R 866768 CDS YP_003037807.1 253774976 8156970 3791629..3792150 1 NC_012947.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 3792150 8156970 ECBD_3626 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NTPase YP_003037807.1 3791629 D 866768 CDS YP_003037808.1 253774977 8156971 complement(3792235..3792561) 1 NC_012947.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 3792561 8156971 ECBD_3627 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Trp operon repressor YP_003037808.1 3792235 R 866768 CDS YP_003037809.1 253774978 8156972 complement(3792651..3794588) 1 NC_012947.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 3794588 8156972 ECBD_3628 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lytic murein transglycosylase YP_003037809.1 3792651 R 866768 CDS YP_003037810.1 253774979 8156973 3794799..3796466 1 NC_012947.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 3796466 8156973 ECBD_3629 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter ATP-binding protein YP_003037810.1 3794799 D 866768 CDS YP_003037811.1 253774980 8156974 complement(3796773..3798005) 1 NC_012947.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 3798005 8156974 ECBD_3630 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nicotinamide-nucleotide adenylyltransferase YP_003037811.1 3796773 R 866768 CDS YP_003037812.1 253774981 8156975 complement(3798026..3799408) 1 NC_012947.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3799408 8156975 ECBD_3631 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA repair protein RadA YP_003037812.1 3798026 R 866768 CDS YP_003037813.1 253774982 8156976 complement(3799457..3800425) 1 NC_012947.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 3800425 serB 8156976 serB Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoserine phosphatase YP_003037813.1 3799457 R 866768 CDS YP_003037814.1 253774983 8156977 3800531..3801175 1 NC_012947.1 KEGG: sbo:SBO_4450 hypothetical protein; hypothetical protein 3801175 8156977 ECBD_3633 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037814.1 3800531 D 866768 CDS YP_003037815.1 253774984 8156978 3801203..3802219 1 NC_012947.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A 3802219 lplA 8156978 lplA Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoate-protein ligase A YP_003037815.1 3801203 D 866768 CDS YP_003037816.1 253774985 8156979 3802251..3802514 1 NC_012947.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sfv:SFV_4419 hypothetical protein; helix-turn-helix domain protein 3802514 8156979 ECBD_3635 Escherichia coli 'BL21-Gold(DE3)pLysS AG' helix-turn-helix domain protein YP_003037816.1 3802251 D 866768 CDS YP_003037817.1 253774986 8156980 complement(3802675..3803394) 1 NC_012947.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 3803394 deoD 8156980 deoD Escherichia coli 'BL21-Gold(DE3)pLysS AG' purine nucleoside phosphorylase YP_003037817.1 3802675 R 866768 CDS YP_003037818.1 253774987 8156981 complement(3803474..3804697) 1 NC_012947.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 3804697 8156981 ECBD_3637 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphopentomutase YP_003037818.1 3803474 R 866768 CDS YP_003037819.1 253774988 8156982 complement(3804749..3806071) 1 NC_012947.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 3806071 deoA 8156982 deoA Escherichia coli 'BL21-Gold(DE3)pLysS AG' thymidine phosphorylase YP_003037819.1 3804749 R 866768 CDS YP_003037820.1 253774989 8156983 complement(3806198..3806977) 1 NC_012947.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 3806977 8156983 ECBD_3639 Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxyribose-phosphate aldolase YP_003037820.1 3806198 R 866768 CDS YP_003037821.1 253774990 8156984 3807235..3808785 1 NC_012947.1 hypothetical protein 3808785 8156984 ECBD_3640 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037821.1 3807235 D 866768 CDS YP_003037822.1 253774991 8156985 3808757..3809620 1 NC_012947.1 PFAM: radical SAM protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_4413 activating enzyme; radical SAM protein 3809620 8156985 ECBD_3641 Escherichia coli 'BL21-Gold(DE3)pLysS AG' radical SAM protein YP_003037822.1 3808757 D 866768 CDS YP_003037823.1 253774992 8156986 complement(3809838..3810617) 1 NC_012947.1 PFAM: TatD-related deoxyribonuclease; KEGG: elf:LF82_3504 uncharacterized deoxyribonuclease YjjV; deoxyribonuclease YjjV 3810617 8156986 ECBD_3642 Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxyribonuclease YjjV YP_003037823.1 3809838 R 866768 CDS YP_003037824.1 253774993 8156987 complement(3810614..3811687) 1 NC_012947.1 PFAM: patatin; KEGG: ssn:SSON_4528 hypothetical protein; patatin 3811687 8156987 ECBD_3643 Escherichia coli 'BL21-Gold(DE3)pLysS AG' patatin YP_003037824.1 3810614 R 866768 CDS YP_003037825.1 253774994 8156988 complement(3811809..3811970) 1 NC_012947.1 PFAM: protein of unknown function DUF1328; KEGG: sbc:SbBS512_E4920 hypothetical protein; hypothetical protein 3811970 8156988 ECBD_3644 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037825.1 3811809 R 866768 CDS YP_003037826.1 253774995 8156989 complement(3812097..3812696) 1 NC_012947.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: ssn:SSON_4526 periplasmic protein; periplasmic protein 3812696 8156989 ECBD_3645 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic protein YP_003037826.1 3812097 R 866768 CDS YP_003037827.1 253774996 8156990 complement(3813095..3814684) 1 NC_012947.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3814684 prfC 8156990 prfC Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptide chain release factor 3 YP_003037827.1 3813095 R 866768 CDS YP_003037828.1 253774997 8156991 complement(3814775..3815452) 1 NC_012947.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 3815452 8156991 ECBD_3647 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleotidase YP_003037828.1 3814775 R 866768 CDS YP_003037829.1 253774998 8156992 complement(3815467..3815913) 1 NC_012947.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 3815913 rimI 8156992 rimI Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosomal-protein-alanine N-acetyltransferase YP_003037829.1 3815467 R 866768 CDS YP_003037830.1 253774999 8156993 complement(3815882..3816295) 1 NC_012947.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 3816295 8156993 ECBD_3649 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunit psi YP_003037830.1 3815882 R 866768 CDS YP_003037831.1 253775000 8156994 3816398..3817429 1 NC_012947.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 3817429 rsmC 8156994 rsmC Escherichia coli 'BL21-Gold(DE3)pLysS AG' 16S ribosomal RNA m2G1207 methyltransferase YP_003037831.1 3816398 D 866768 CDS YP_003037832.1 253775001 8156998 complement(3818058..3818294) 1 NC_012947.1 PFAM: protein of unknown function DUF1435; KEGG: sfv:SFV_4401 inner membrane protein; hypothetical protein 3818294 8156998 ECBD_3651 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037832.1 3818058 R 866768 CDS YP_003037833.1 253775002 8156999 3818435..3819223 1 NC_012947.1 PFAM: ferric iron reductase; KEGG: sbo:SBO_4427 ferric iron reductase involved in ferric hydroximate transport; ferric iron reductase involved in ferric hydroximate transport 3819223 8156999 ECBD_3652 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferric iron reductase involved in ferric hydroximate transport YP_003037833.1 3818435 D 866768 CDS YP_003037834.1 253775003 8157000 complement(3819261..3819884) 1 NC_012947.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; BglJ family transcriptional regulator 3819884 8157000 ECBD_3653 Escherichia coli 'BL21-Gold(DE3)pLysS AG' BglJ family transcriptional regulator YP_003037834.1 3819261 R 866768 CDS YP_003037835.1 253775004 8157001 complement(3819896..3820621) 1 NC_012947.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 3820621 8157001 ECBD_3654 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LuxR family transcriptional regulator YP_003037835.1 3819896 R 866768 CDS YP_003037836.1 253775005 8157002 3821240..3822010 1 NC_012947.1 PFAM: protein of unknown function DUF1212; KEGG: sfv:SFV_4395 structural protein; hypothetical protein 3822010 8157002 ECBD_3655 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037836.1 3821240 D 866768 CDS YP_003037837.1 253775006 8157003 3822001..3822474 1 NC_012947.1 KEGG: sfv:SFV_4394 hypothetical protein; hypothetical protein 3822474 8157003 ECBD_3656 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037837.1 3822001 D 866768 CDS YP_003037838.1 253775007 8157004 3822581..3823120 1 NC_012947.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein DnaI 3823120 8157004 ECBD_3657 Escherichia coli 'BL21-Gold(DE3)pLysS AG' primosomal protein DnaI YP_003037838.1 3822581 D 866768 CDS YP_003037839.1 253775008 8157005 3823123..3823860 1 NC_012947.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 3823860 8157005 ECBD_3658 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA replication protein DnaC YP_003037839.1 3823123 D 866768 CDS YP_003037840.1 253775009 8157006 3823909..3824403 1 NC_012947.1 KEGG: sbc:SbBS512_E4900 hypothetical protein; hypothetical protein 3824403 8157006 ECBD_3659 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037840.1 3823909 D 866768 CDS YP_003037841.1 253775010 8157007 3824657..3826948 1 NC_012947.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 3826948 8157007 ECBD_3660 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoglycerol transferase I YP_003037841.1 3824657 D 866768 CDS YP_003037842.1 253775011 8157008 complement(3827086..3828108) 1 NC_012947.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: ssn:SSON_4504 oxidoreductase; alcohol dehydrogenase GroES domain protein 3828108 8157008 ECBD_3661 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase GroES domain protein YP_003037842.1 3827086 R 866768 CDS YP_003037843.1 253775012 8157010 3829375..3830736 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily MFS_1 3830736 8157010 ECBD_3663 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003037843.1 3829375 D 866768 CDS YP_003037844.1 253775013 8157011 complement(3830785..3832440) 1 NC_012947.1 PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; ligand binding Tar domain protein; KEGG: sbo:SBO_4414 methyl-accepting chemotaxis protein I; methyl-accepting chemotaxis sensory transducer 3832440 8157011 ECBD_3664 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyl-accepting chemotaxis sensory transducer YP_003037844.1 3830785 R 866768 CDS YP_003037845.1 253775014 8157012 complement(3832559..3833005) 1 NC_012947.1 KEGG: sfv:SFV_4385 regulator of the 4HPA-hydroxylase operon; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 3833005 8157012 ECBD_3665 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MarR family transcriptional regulator YP_003037845.1 3832559 R 866768 CDS YP_003037846.1 253775015 8157013 3833277..3834566 1 NC_012947.1 KEGG: sbo:SBO_4412 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit 3834566 8157013 ECBD_3666 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit YP_003037846.1 3833277 D 866768 CDS YP_003037847.1 253775016 8157014 3834563..3836029 1 NC_012947.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: sbc:SbBS512_E4889 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 3836029 8157014 ECBD_3667 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_003037847.1 3834563 D 866768 CDS YP_003037848.1 253775017 8157015 3836031..3836882 1 NC_012947.1 KEGG: sbc:SbBS512_E4888 3,4-dihydroxyphenylacetate 2,3-dioxygenase; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 3836882 8157015 ECBD_3668 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_003037848.1 3836031 D 866768 CDS YP_003037849.1 253775018 8157016 3836892..3837272 1 NC_012947.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: sfx:S4651 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 3837272 8157016 ECBD_3669 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_003037849.1 3836892 D 866768 CDS YP_003037850.1 253775019 8157017 3837340..3838143 1 NC_012947.1 KEGG: ssn:SSON_4495 2-oxo-hept-3-ene-1,7-dioate hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: fumarylacetoacetate hydrolase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 3838143 8157017 ECBD_3670 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_003037850.1 3837340 D 866768 CDS YP_003037851.1 253775020 8157018 3838154..3838942 1 NC_012947.1 KEGG: ssn:SSON_4494 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (HHED aldolase); TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 3838942 8157018 ECBD_3671 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_003037851.1 3838154 D 866768 CDS YP_003037852.1 253775021 8158242 3839066..3840442 1 NC_012947.1 TIGRFAM: 4-hydroxyphenylacetate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_4406 4-hydroxyphenylacetate permease; 4-hydroxyphenylacetate transporter 3840442 8158242 ECBD_3672 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxyphenylacetate transporter YP_003037852.1 3839066 D 866768 CDS YP_003037853.1 253775022 8158494 3840452..3841342 1 NC_012947.1 KEGG: efe:EFER_3069 regulator of the 4HPA-hydroxylase operon; TIGRFAM: 4-hydroxyphenylacetate catabolism regulatory protein HpaA; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; AraC family transcriptional regulator 3841342 8158494 ECBD_3673 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003037853.1 3840452 D 866768 CDS YP_003037854.1 253775023 8158581 3841593..3843155 1 NC_012947.1 TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: efe:EFER_3070 4-hydroxyphenylacetate 3-monooxygenase large component; 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit 3843155 8158581 ECBD_3674 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit YP_003037854.1 3841593 D 866768 CDS YP_003037855.1 253775024 8158582 3843173..3843685 1 NC_012947.1 TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit; PFAM: flavin reductase domain protein FMN-binding; KEGG: sbc:SbBS512_E4881 4-hydroxyphenylacetate 3-monooxygenase, reductase component; 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit 3843685 8158582 ECBD_3675 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit YP_003037855.1 3843173 D 866768 CDS YP_003037856.1 253775025 8158583 3844078..3846228 1 NC_012947.1 PFAM: carbon starvation protein CstA; KEGG: sbc:SbBS512_E4880 carbon starvation family protein; carbon starvation protein CstA 3846228 8158583 ECBD_3676 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbon starvation protein CstA YP_003037856.1 3844078 D 866768 CDS YP_003037857.1 253775026 8158584 3846278..3846481 1 NC_012947.1 PFAM: protein of unknown function DUF466; KEGG: sfv:SFV_4372 hypothetical protein; hypothetical protein 3846481 8158584 ECBD_3677 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037857.1 3846278 D 866768 CDS YP_003037858.1 253775027 8158585 3846492..3847448 1 NC_012947.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: efe:EFER_3075 GTPase; GTP-binding protein YjiA 3847448 8158585 ECBD_3678 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTP-binding protein YjiA YP_003037858.1 3846492 D 866768 CDS YP_003037859.1 253775028 8158586 complement(3847494..3848408) 1 NC_012947.1 PFAM: restriction endonuclease; KEGG: ypb:YPTS_4095 restriction endonuclease; restriction endonuclease 3848408 8158586 ECBD_3679 Escherichia coli 'BL21-Gold(DE3)pLysS AG' restriction endonuclease YP_003037859.1 3847494 R 866768 CDS YP_003037860.1 253775029 8158587 3848596..3852108 1 NC_012947.1 restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R 3852108 hsdR 8158587 hsdR Escherichia coli 'BL21-Gold(DE3)pLysS AG' type I restriction enzyme EcoKI subunit R YP_003037860.1 3848596 D 866768 CDS YP_003037861.1 253775030 8158588 3852309..3853898 1 NC_012947.1 PFAM: N-6 DNA methylase; KEGG: efe:EFER_3080 DNA methylase M; Site-specific DNA-methyltransferase (adenine-specific) 3853898 8158588 ECBD_3681 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Site-specific DNA-methyltransferase (adenine-specific) YP_003037861.1 3852309 D 866768 CDS YP_003037862.1 253775031 8158590 3854670..3854945 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 3854945 8158590 ECBD_3683 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037862.1 3854670 D 866768 CDS YP_003037863.1 253775032 8158591 3854864..3855367 1 NC_012947.1 PFAM: IS1 transposase; KEGG: sty:HCM1.136a IS1 transposase; IS1 transposase 3855367 8158591 ECBD_3684 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037863.1 3854864 D 866768 CDS YP_003037864.1 253775033 8158592 3856323..3856664 1 NC_012947.1 involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE 3856664 8158592 ECBD_3685 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endoribonuclease SymE YP_003037864.1 3856323 D 866768 CDS YP_003037865.1 253775034 8158593 3856808..3858205 1 NC_012947.1 McrB protein together with McrC forms the McrBC restriction system; recognizes N4- and C5-methylcytosine (and 5-hydroxy-methylcytosines); appears to act against 5-methylcytosine preceded by a purine residue; 5-methylcytosine-specific restriction enzyme subunit McrB 3858205 8158593 ECBD_3686 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5-methylcytosine-specific restriction enzyme subunit McrB YP_003037865.1 3856808 D 866768 CDS YP_003037866.1 253775035 8158594 3858205..3859251 1 NC_012947.1 McrC protein together with McrB forms the McrBC restriction system; recognizes N4- and C5-methylcytosine (and 5-hydroxy-methylcytosines); appears to act against 5-methylcytosine preceded by a purine residue; MrcC modulates the specificty of McrB and has DNA cleavage activity; 5-methylcytosine-specific restriction enzyme subunit McrC 3859251 8158594 ECBD_3687 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5-methylcytosine-specific restriction enzyme subunit McrC YP_003037866.1 3858205 D 866768 CDS YP_003037867.1 253775036 8158596 complement(3862677..3863180) 1 NC_012947.1 PFAM: IS1 transposase; KEGG: dps:DP0860 insertion element IS1 1/5/6 protein (InsB); IS1 transposase 3863180 8158596 ECBD_3689 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037867.1 3862677 R 866768 CDS YP_003037868.1 253775037 8158597 complement(3863099..3863374) 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 3863374 8158597 ECBD_3690 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037868.1 3863099 R 866768 CDS YP_003037869.1 253775038 8158598 complement(3863429..3864196) 1 NC_012947.1 PFAM: transposase YhgA family protein; KEGG: efe:EFER_3089 conserved hypothetical protein, transposase; transposase YhgA family protein 3864196 8158598 ECBD_3691 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase YhgA family protein YP_003037869.1 3863429 R 866768 CDS YP_003037870.1 253775039 8158599 complement(3864233..3864406) 1 NC_012947.1 hypothetical protein 3864406 8158599 ECBD_3692 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037870.1 3864233 R 866768 CDS YP_003037871.1 253775040 8158600 3864675..3865907 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4767 multidrug resistance protein MdtM; major facilitator superfamily MFS_1 3865907 8158600 ECBD_3693 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003037871.1 3864675 D 866768 CDS YP_003037872.1 253775041 8158601 3865948..3867228 1 NC_012947.1 PFAM: protein of unknown function DUF445; KEGG: sbc:SbBS512_E4768 putatitve membrane protein; hypothetical protein 3867228 8158601 ECBD_3694 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037872.1 3865948 D 866768 CDS YP_003037873.1 253775042 8158602 3867344..3868495 1 NC_012947.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: elf:LF82_3487 uncharacterized protein YjiM; 2-hydroxyglutaryl-CoA dehydratase D-component 3868495 8158602 ECBD_3695 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-hydroxyglutaryl-CoA dehydratase D-component YP_003037873.1 3867344 D 866768 CDS YP_003037874.1 253775043 8158603 3868505..3869272 1 NC_012947.1 KEGG: sbc:SbBS512_E4770 (R)-2-hydroxyglutaryl-CoA dehydratase activator; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA-substrate-specific enzyme activase 3869272 8158603 ECBD_3696 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CoA-substrate-specific enzyme activase YP_003037874.1 3868505 D 866768 CDS YP_003037875.1 253775044 8158604 3869269..3869526 1 NC_012947.1 KEGG: sbo:SBO_4385 hypothetical protein; hypothetical protein 3869526 8158604 ECBD_3697 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037875.1 3869269 D 866768 CDS YP_003037876.1 253775045 8158605 3869480..3870451 1 NC_012947.1 PFAM: SdiA-regulated domain protein; KEGG: sbo:SBO_4384 hypothetical protein; SdiA-regulated domain protein 3870451 8158605 ECBD_3698 Escherichia coli 'BL21-Gold(DE3)pLysS AG' SdiA-regulated domain protein YP_003037876.1 3869480 D 866768 CDS YP_003037877.1 253775046 8158606 3870519..3871697 1 NC_012947.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: elf:LF82_3484 uncharacterized protein YjiJ; hypothetical protein 3871697 8158606 ECBD_3699 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037877.1 3870519 D 866768 CDS YP_003037878.1 253775047 8158607 complement(3871710..3872264) 1 NC_012947.1 in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown; RNA 2'-phosphotransferase-like protein 3872264 8158607 ECBD_3700 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA 2'-phosphotransferase-like protein YP_003037878.1 3871710 R 866768 CDS YP_003037879.1 253775048 8158608 3872514..3873197 1 NC_012947.1 PFAM: nucleoside recognition domain protein; KEGG: sbc:SbBS512_E4775 transporter; nucleoside recognition domain protein 3873197 8158608 ECBD_3701 Escherichia coli 'BL21-Gold(DE3)pLysS AG' nucleoside recognition domain protein YP_003037879.1 3872514 D 866768 CDS YP_003037880.1 253775049 8158609 3873194..3873655 1 NC_012947.1 PFAM: nucleoside recognition domain protein; KEGG: sbo:SBO_4380 hypothetical protein; hypothetical protein 3873655 8158609 ECBD_3702 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037880.1 3873194 D 866768 CDS YP_003037881.1 253775050 8158610 3873668..3874840 1 NC_012947.1 TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; amidohydrolase; KEGG: sbc:SbBS512_E4777 beta-aspartyl peptidase; isoaspartyl dipeptidase 3874840 8158610 ECBD_3703 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isoaspartyl dipeptidase YP_003037881.1 3873668 D 866768 CDS YP_003037882.1 253775051 8158611 3874905..3875816 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: elf:LF82_3481 uncharacterized HTH-type transcriptional regulator; DNA-binding transcriptional regulator 3875816 8158611 ECBD_3704 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YP_003037882.1 3874905 D 866768 CDS YP_003037883.1 253775052 8158612 complement(3875809..3876201) 1 NC_012947.1 inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein 3876201 iraD 8158612 iraD Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA replication/recombination/repair protein YP_003037883.1 3875809 R 866768 CDS YP_003037884.1 253775053 8158613 complement(3876167..3876301) 1 NC_012947.1 hypothetical protein 3876301 8158613 ECBD_3706 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037884.1 3876167 R 866768 CDS YP_003037885.1 253775054 8158614 complement(3876397..3876540) 1 NC_012947.1 KEGG: sbc:SbBS512_E4782 hypothetical protein; hypothetical protein 3876540 8158614 ECBD_3707 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037885.1 3876397 R 866768 CDS YP_003037886.1 253775055 8158615 complement(3876519..3876620) 1 NC_012947.1 hypothetical protein 3876620 8158615 ECBD_3708 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037886.1 3876519 R 866768 CDS YP_003037887.1 253775056 8158616 3876874..3877704 1 NC_012947.1 KEGG: ssn:SSON_4480 hypothetical protein; hypothetical protein 3877704 8158616 ECBD_3709 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037887.1 3876874 D 866768 CDS YP_003037888.1 253775057 8158617 complement(3877845..3878618) 1 NC_012947.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 3878618 8158617 ECBD_3710 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor UxuR YP_003037888.1 3877845 R 866768 CDS YP_003037889.1 253775058 8158618 3878617..3878811 1 NC_012947.1 KEGG: sbc:SbBS512_E4790 hypothetical protein; hypothetical protein 3878811 8158618 ECBD_3711 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037889.1 3878617 D 866768 CDS YP_003037890.1 253775059 8158619 complement(3878833..3880293) 1 NC_012947.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ssn:SSON_4478 D-mannonate oxidoreductase; mannitol dehydrogenase 3880293 8158619 ECBD_3712 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannitol dehydrogenase YP_003037890.1 3878833 R 866768 CDS YP_003037891.1 253775060 8158620 complement(3880374..3881558) 1 NC_012947.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3881558 8158620 ECBD_3713 Escherichia coli 'BL21-Gold(DE3)pLysS AG' mannonate dehydratase YP_003037891.1 3880374 R 866768 CDS YP_003037892.1 253775061 8158621 3881898..3883241 1 NC_012947.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; citrate transporter; fructuronate transporter 3883241 8158621 ECBD_3714 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructuronate transporter YP_003037892.1 3881898 D 866768 CDS YP_003037893.1 253775062 8158622 complement(3883484..3884386) 1 NC_012947.1 PFAM: FimH mannose-binding domain protein; fimbrial protein; KEGG: sfv:SFV_4206 FimH protein precursor; FimH mannose-binding domain protein 3884386 8158622 ECBD_3715 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FimH mannose-binding domain protein YP_003037893.1 3883484 R 866768 CDS YP_003037894.1 253775063 8158623 complement(3884406..3884909) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: sfv:SFV_4207 minor fimbrial subunit, precursor polypeptide; fimbrial protein 3884909 8158623 ECBD_3716 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037894.1 3884406 R 866768 CDS YP_003037895.1 253775064 8158624 complement(3884922..3885452) 1 NC_012947.1 PFAM: fimbrial protein; fimbrial protein 3885452 8158624 ECBD_3717 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037895.1 3884922 R 866768 CDS YP_003037896.1 253775065 8158625 complement(3885462..3888098) 1 NC_012947.1 PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 3888098 8158625 ECBD_3718 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial biogenesis outer membrane usher protein YP_003037896.1 3885462 R 866768 CDS YP_003037897.1 253775066 8158626 complement(3888165..3888890) 1 NC_012947.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sfx:S4463 periplasmic chaperone; Pili assembly chaperone, N-terminal 3888890 8158626 ECBD_3719 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Pili assembly chaperone, N-terminal YP_003037897.1 3888165 R 866768 CDS YP_003037898.1 253775067 8158627 complement(3888927..3889466) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: sfx:S4464 fimbrial protein; fimbrial protein 3889466 8158627 ECBD_3720 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037898.1 3888927 R 866768 CDS YP_003037899.1 253775068 8158628 complement(3889531..3890079) 1 NC_012947.1 PFAM: fimbrial protein; KEGG: sbo:SBO_4364 major type 1 subunit fimbrin; fimbrial protein 3890079 8158628 ECBD_3721 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fimbrial protein YP_003037899.1 3889531 R 866768 CDS YP_003037900.1 253775069 8158629 complement(3890561..3891157) 1 NC_012947.1 inversion of on/off regulator of fimA; tyrosine recombinase 3891157 8158629 ECBD_3722 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tyrosine recombinase YP_003037900.1 3890561 R 866768 CDS YP_003037901.1 253775070 8158630 3891825..3892100 1 NC_012947.1 PFAM: Insertion element protein; KEGG: hdu:HD1971 insertion element IS1 1/2/3/5/6 protein InsA; Insertion element protein 3892100 8158630 ECBD_3723 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037901.1 3891825 D 866768 CDS YP_003037902.1 253775071 8158631 3892019..3892522 1 NC_012947.1 PFAM: IS1 transposase; KEGG: dps:DP0860 insertion element IS1 1/5/6 protein (InsB); IS1 transposase 3892522 8158631 ECBD_3724 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037902.1 3892019 D 866768 CDS YP_003037903.1 253775072 8158632 complement(3892516..3893013) 1 NC_012947.1 PFAM: integrase; integrase 3893013 8158632 ECBD_3725 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integrase YP_003037903.1 3892516 R 866768 CDS YP_003037904.1 253775073 8158633 3894469..3895185 1 NC_012947.1 PFAM: oligogalacturonate-specific porin; KEGG: sfv:SFV_4216 hypothetical protein; oligogalacturonate-specific porin 3895185 8158633 ECBD_3726 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oligogalacturonate-specific porin YP_003037904.1 3894469 D 866768 CDS YP_003037905.1 253775074 8158634 3895205..3896311 1 NC_012947.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: sfv:SFV_4217 hypothetical protein; N-acetylneuraminic acid mutarotase 3896311 8158634 ECBD_3727 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylneuraminic acid mutarotase YP_003037905.1 3895205 D 866768 CDS YP_003037906.1 253775075 8158635 3896376..3897356 1 NC_012947.1 PFAM: protein of unknown function DUF303 acetylesterase KEGG: sfv:SFV_4218 hypothetical protein; hypothetical protein 3897356 8158635 ECBD_3728 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037906.1 3896376 D 866768 CDS YP_003037907.1 253775076 8158637 3899917..3900174 1 NC_012947.1 KEGG: kpn:KPN_00259 hypothetical protein; hypothetical protein 3900174 8158637 ECBD_3730 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037907.1 3899917 D 866768 CDS YP_003037908.1 253775077 8158638 3900186..3900731 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tgr:Tgr7_0152 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 3900731 8158638 ECBD_3731 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GCN5-related N-acetyltransferase YP_003037908.1 3900186 D 866768 CDS YP_003037909.1 253775078 8158639 3900787..3901533 1 NC_012947.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: kpe:KPK_4969 methyltransferase family protein; methyltransferase type 11 3901533 8158639 ECBD_3732 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methyltransferase type 11 YP_003037909.1 3900787 D 866768 CDS YP_003037910.1 253775079 8158640 3902319..3903440 1 NC_012947.1 PFAM: peptidase M42 family protein; KEGG: stm:STM1612 cellulase protein; peptidase M42 family protein 3903440 8158640 ECBD_3733 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase M42 family protein YP_003037910.1 3902319 D 866768 CDS YP_003037911.1 253775080 8158641 3903437..3903715 1 NC_012947.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sea:SeAg_B1548 PTS system, lactose/cellobiose specific IIB subunit; protein-N(pi)-phosphohistidine--sugar phosphotransferase 3903715 8158641 ECBD_3734 Escherichia coli 'BL21-Gold(DE3)pLysS AG' protein-N(pi)-phosphohistidine--sugar phosphotransferase YP_003037911.1 3903437 D 866768 CDS YP_003037912.1 253775081 8158642 3903727..3905040 1 NC_012947.1 TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component; KEGG: sea:SeAg_B1547 PTS system, IIc component; PTS system, galactitol-specific IIC subunit 3905040 8158642 ECBD_3735 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system, galactitol-specific IIC subunit YP_003037912.1 3903727 D 866768 CDS YP_003037913.1 253775082 8158643 3905053..3905859 1 NC_012947.1 PFAM: photosystem I assembly BtpA; KEGG: stm:STM1615 nucleoside triphosphatase; photosystem I assembly BtpA 3905859 8158643 ECBD_3736 Escherichia coli 'BL21-Gold(DE3)pLysS AG' photosystem I assembly BtpA YP_003037913.1 3905053 D 866768 CDS YP_003037914.1 253775083 8158644 3905990..3906421 1 NC_012947.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sea:SeAg_B1545 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS IIA-like nitrogen-regulatory protein PtsN 3906421 8158644 ECBD_3737 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS IIA-like nitrogen-regulatory protein PtsN YP_003037914.1 3905990 D 866768 CDS YP_003037915.1 253775084 8158645 3906433..3907065 1 NC_012947.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: sew:SeSA_A1734 protein SgcE; epimerase 3907065 8158645 ECBD_3738 Escherichia coli 'BL21-Gold(DE3)pLysS AG' epimerase YP_003037915.1 3906433 D 866768 CDS YP_003037916.1 253775085 8158646 3907082..3907864 1 NC_012947.1 PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: sea:SeAg_B1543 regulatory protein; DeoR family transcriptional regulator 3907864 8158646 ECBD_3739 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DeoR family transcriptional regulator YP_003037916.1 3907082 D 866768 CDS YP_003037917.1 253775086 8158647 3908054..3908329 1 NC_012947.1 PFAM: Insertion element protein; KEGG: dps:DP0861 insertion element iso-IS1d protein (InsA); Insertion element protein 3908329 8158647 ECBD_3740 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Insertion element protein YP_003037917.1 3908054 D 866768 CDS YP_003037918.1 253775087 8158648 3908248..3908751 1 NC_012947.1 PFAM: IS1 transposase; KEGG: dps:DP0860 insertion element IS1 1/5/6 protein (InsB); IS1 transposase 3908751 8158648 ECBD_3741 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS1 transposase YP_003037918.1 3908248 D 866768 CDS YP_003037919.1 253775088 8158649 complement(3908834..3909091) 1 NC_012947.1 hypothetical protein 3909091 8158649 ECBD_3742 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037919.1 3908834 R 866768 CDS YP_003037920.1 253775089 8158652 3910841..3911362 1 NC_012947.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; RNA polymerase sigma factor FecI 3911362 8158652 ECBD_3745 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA polymerase sigma factor FecI YP_003037920.1 3910841 D 866768 CDS YP_003037921.1 253775090 8158653 3911359..3912312 1 NC_012947.1 with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; fec operon regulator FecR 3912312 8158653 ECBD_3746 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fec operon regulator FecR YP_003037921.1 3911359 D 866768 CDS YP_003037922.1 253775091 8158654 3912399..3914723 1 NC_012947.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: sdy:SDY_4297 citrate-dependent iron transport, outer membrane receptor; TonB-dependent siderophore receptor 3914723 8158654 ECBD_3747 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TonB-dependent siderophore receptor YP_003037922.1 3912399 D 866768 CDS YP_003037923.1 253775092 8158655 3914768..3915670 1 NC_012947.1 part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); iron-dicitrate transporter substrate-binding subunit 3915670 fecB 8158655 fecB Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-dicitrate transporter substrate-binding subunit YP_003037923.1 3914768 D 866768 CDS YP_003037924.1 253775093 8158656 3915667..3916665 1 NC_012947.1 part of the FecBCDE citrate-dependent iron (III) transporter; iron-dicitrate transporter permease subunit 3916665 fecC 8158656 fecC Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-dicitrate transporter permease subunit YP_003037924.1 3915667 D 866768 CDS YP_003037925.1 253775094 8158657 3916662..3917618 1 NC_012947.1 ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.; iron-dicitrate transporter subunit FecD 3917618 fecD 8158657 fecD Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-dicitrate transporter subunit FecD YP_003037925.1 3916662 D 866768 CDS YP_003037926.1 253775095 8158658 3917619..3918386 1 NC_012947.1 Part of the FecBCDE citrate-dependent iron (III) transporter; iron-dicitrate transporter ATP-binding subunit 3918386 fecE 8158658 fecE Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-dicitrate transporter ATP-binding subunit YP_003037926.1 3917619 D 866768 CDS YP_003037927.1 253775096 8158659 complement(3918943..3919356) 1 NC_012947.1 KEGG: eca:ECA2935 hypothetical protein; hypothetical protein 3919356 8158659 ECBD_3752 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037927.1 3918943 R 866768 CDS YP_003037928.1 253775097 8158661 3920134..3920436 1 NC_012947.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfl:SF1439 IS600 ORF1; transposase IS3/IS911 family protein 3920436 8158661 ECBD_3754 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS3/IS911 family protein YP_003037928.1 3920134 D 866768 CDS YP_003037929.1 253775098 8158576 3920472..3921290 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: sfl:SF1901 IS600 ORF2; Integrase catalytic region 3921290 8158576 ECBD_3755 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003037929.1 3920472 D 866768 CDS YP_003037930.1 253775099 8160130 3921444..3923441 1 NC_012947.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sbc:SbBS512_E0764 transporter BCCT family; choline/carnitine/betaine transporter 3923441 8160130 ECBD_3756 Escherichia coli 'BL21-Gold(DE3)pLysS AG' choline/carnitine/betaine transporter YP_003037930.1 3921444 D 866768 CDS YP_003037931.1 253775100 8160131 3923504..3923917 1 NC_012947.1 KEGG: kpn:KPN_pKPN3p05959 hypothetical protein; hypothetical protein 3923917 8160131 ECBD_3757 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037931.1 3923504 D 866768 CDS YP_003037932.1 253775101 8160133 complement(3924747..3925019) 1 NC_012947.1 PFAM: transposase IS3/IS911 family protein; KEGG: sbc:SbBS512_E2307 IS911, transposase orfA; transposase IS3/IS911 family protein 3925019 8160133 ECBD_3759 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS3/IS911 family protein YP_003037932.1 3924747 R 866768 CDS YP_003037933.1 253775102 8160134 3925240..3925590 1 NC_012947.1 KEGG: ent:Ent638_1538 lipoprotein; hypothetical protein 3925590 8160134 ECBD_3760 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037933.1 3925240 D 866768 CDS YP_003037934.1 253775103 8160135 complement(3925643..3925768) 1 NC_012947.1 hypothetical protein 3925768 8160135 ECBD_3761 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037934.1 3925643 R 866768 CDS YP_003037935.1 253775104 8160136 complement(3925811..3926929) 1 NC_012947.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: pmu:PM1759 hypothetical protein; oxidoreductase domain protein 3926929 8160136 ECBD_3762 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase domain protein YP_003037935.1 3925811 R 866768 CDS YP_003037936.1 253775105 8160137 complement(3926941..3928158) 1 NC_012947.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: ses:SARI_01868 sialic acid transporter; sialic acid transporter 3928158 8160137 ECBD_3763 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sialic acid transporter YP_003037936.1 3926941 R 866768 CDS YP_003037937.1 253775106 8160138 3928785..3930113 1 NC_012947.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 3930113 8160138 ECBD_3764 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003037937.1 3928785 D 866768 CDS YP_003037938.1 253775107 8160140 complement(3932940..3934130) 1 NC_012947.1 PFAM: integrase; KEGG: ent:Ent638_0463 phage integrase; integrase 3934130 8160140 ECBD_3766 Escherichia coli 'BL21-Gold(DE3)pLysS AG' integrase YP_003037938.1 3932940 R 866768 CDS YP_003037939.1 253775108 8160142 3934671..3935690 1 NC_012947.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sfv:SFV_4229 oxidoreductase; alcohol dehydrogenase GroES domain protein 3935690 8160142 ECBD_3767 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alcohol dehydrogenase GroES domain protein YP_003037939.1 3934671 D 866768 CDS YP_003037940.1 253775109 8160143 complement(3935694..3936257) 1 NC_012947.1 KEGG: elf:LF82_1090 thermosensitive gluconokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; D-gluconate kinase 3936257 idnK 8160143 idnK Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-gluconate kinase YP_003037940.1 3935694 R 866768 CDS YP_003037941.1 253775110 8160144 3936474..3937505 1 NC_012947.1 NAD-binding; L-idonate 5-dehydrogenase 3937505 8160144 ECBD_3769 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-idonate 5-dehydrogenase YP_003037941.1 3936474 D 866768 CDS YP_003037942.1 253775111 8160145 3937529..3938293 1 NC_012947.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 3938293 8160145 ECBD_3770 Escherichia coli 'BL21-Gold(DE3)pLysS AG' gluconate 5-dehydrogenase YP_003037942.1 3937529 D 866768 CDS YP_003037943.1 253775112 8160146 3938356..3939675 1 NC_012947.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; citrate transporter; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: ssn:SSON_4450 L-idonate transporter; gluconate transporter 3939675 8160146 ECBD_3771 Escherichia coli 'BL21-Gold(DE3)pLysS AG' gluconate transporter YP_003037943.1 3938356 D 866768 CDS YP_003037944.1 253775113 8160147 3939742..3940740 1 NC_012947.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 3940740 8160147 ECBD_3772 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LacI family transcriptional regulator YP_003037944.1 3939742 D 866768 CDS YP_003037945.1 253775114 8160148 3940818..3942320 1 NC_012947.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: ssn:SSON_4448 hypothetical protein; hypothetical protein 3942320 8160148 ECBD_3773 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037945.1 3940818 D 866768 CDS YP_003037946.1 253775115 8160149 complement(3942481..3943563) 1 NC_012947.1 PFAM: permease YjgP/YjgQ family protein; KEGG: elf:LF82_3475 inner membrane protein YjgQ; permease YjgP/YjgQ family protein 3943563 8160149 ECBD_3774 Escherichia coli 'BL21-Gold(DE3)pLysS AG' permease YjgP/YjgQ family protein YP_003037946.1 3942481 R 866768 CDS YP_003037947.1 253775116 8160150 complement(3943563..3944663) 1 NC_012947.1 PFAM: permease YjgP/YjgQ family protein; KEGG: sbo:SBO_4179 hypothetical protein; permease YjgP/YjgQ family protein 3944663 8160150 ECBD_3775 Escherichia coli 'BL21-Gold(DE3)pLysS AG' permease YjgP/YjgQ family protein YP_003037947.1 3943563 R 866768 CDS YP_003037948.1 253775117 8160151 3944930..3946441 1 NC_012947.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3946441 8160151 ECBD_3776 Escherichia coli 'BL21-Gold(DE3)pLysS AG' leucyl aminopeptidase YP_003037948.1 3944930 D 866768 CDS YP_003037949.1 253775118 8160152 3946795..3947238 1 NC_012947.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 3947238 8160152 ECBD_3777 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase III subunit chi YP_003037949.1 3946795 D 866768 CDS YP_003037950.1 253775119 8160153 3947238..3950093 1 NC_012947.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3950093 valS 8160153 valS Escherichia coli 'BL21-Gold(DE3)pLysS AG' valyl-tRNA synthetase YP_003037950.1 3947238 D 866768 CDS YP_003037951.1 253775120 8160154 complement(3950149..3951345) 1 NC_012947.1 PFAM: protein of unknown function DUF898 transmembrane; KEGG: sfx:S4493 hypothetical protein; hypothetical protein 3951345 8160154 ECBD_3779 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037951.1 3950149 R 866768 CDS YP_003037952.1 253775121 8160155 3951538..3952041 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 3952041 8160155 ECBD_3780 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GCN5-related N-acetyltransferase YP_003037952.1 3951538 D 866768 CDS YP_003037953.1 253775122 8160156 complement(3952087..3952503) 1 NC_012947.1 PFAM: protein of unknown function DUF1260; KEGG: sfl:SF4234 hypothetical protein; hypothetical protein 3952503 8160156 ECBD_3781 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037953.1 3952087 R 866768 CDS YP_003037954.1 253775123 8160157 3952665..3953669 1 NC_012947.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 3953669 8160157 ECBD_3782 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ornithine carbamoyltransferase subunit I YP_003037954.1 3952665 D 866768 CDS YP_003037955.1 253775124 8160158 complement(3953742..3955394) 1 NC_012947.1 KEGG: sbo:SBO_4194 hypothetical protein; hypothetical protein 3955394 8160158 ECBD_3783 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037955.1 3953742 R 866768 CDS YP_003037956.1 253775125 8160159 complement(3955517..3955969) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sdy:SDY_4270 hypothetical protein; hypothetical protein 3955969 8160159 ECBD_3784 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037956.1 3955517 R 866768 CDS YP_003037957.1 253775126 8160160 complement(3956114..3956707) 1 NC_012947.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E4834 TetR family transcriptional regulator; TetR family transcriptional regulator 3956707 8160160 ECBD_3785 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TetR family transcriptional regulator YP_003037957.1 3956114 R 866768 CDS YP_003037958.1 253775127 8160161 3956778..3957491 1 NC_012947.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssn:SSON_4429 oxidoreductase; oxidoreductase 3957491 8160161 ECBD_3786 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oxidoreductase YP_003037958.1 3956778 D 866768 CDS YP_003037959.1 253775128 8160162 3957622..3958017 1 NC_012947.1 PFAM: endoribonuclease L-PSP; KEGG: ssn:SSON_4428 hypothetical protein; endoribonuclease L-PSP 3958017 8160162 ECBD_3787 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endoribonuclease L-PSP YP_003037959.1 3957622 D 866768 CDS YP_003037960.1 253775129 8160163 3958436..3959371 1 NC_012947.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3959371 pyrB 8160163 pyrB Escherichia coli 'BL21-Gold(DE3)pLysS AG' aspartate carbamoyltransferase catalytic subunit YP_003037960.1 3958436 D 866768 CDS YP_003037961.1 253775130 8160164 3959384..3959845 1 NC_012947.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 3959845 8160164 ECBD_3789 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aspartate carbamoyltransferase regulatory subunit YP_003037961.1 3959384 D 866768 CDS YP_003037962.1 253775131 8160165 3959918..3960304 1 NC_012947.1 TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: sdy:SDY_4262 hypothetical protein; endoribonuclease L-PSP 3960304 8160165 ECBD_3790 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endoribonuclease L-PSP YP_003037962.1 3959918 D 866768 CDS YP_003037963.1 253775132 8160166 complement(3960510..3963206) 1 NC_012947.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 3963206 8160166 ECBD_3791 Escherichia coli 'BL21-Gold(DE3)pLysS AG' magnesium-transporting ATPase MgtA YP_003037963.1 3960510 R 866768 CDS YP_003037964.1 253775133 8160167 3963585..3964532 1 NC_012947.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 3964532 treR 8160167 treR Escherichia coli 'BL21-Gold(DE3)pLysS AG' trehalose repressor YP_003037964.1 3963585 D 866768 CDS YP_003037965.1 253775134 8160168 3964651..3966072 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunits IIBC 3966072 8160168 ECBD_3793 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system trehalose(maltose)-specific transporter subunits IIBC YP_003037965.1 3964651 D 866768 CDS YP_003037966.1 253775135 8160169 3966122..3967777 1 NC_012947.1 KEGG: sfx:S4513 trehalose-6-phosphate hydrolase; TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose-6-phosphate hydrolase 3967777 8160169 ECBD_3794 Escherichia coli 'BL21-Gold(DE3)pLysS AG' trehalose-6-phosphate hydrolase YP_003037966.1 3966122 D 866768 CDS YP_003037967.1 253775136 8160170 3967749..3967925 1 NC_012947.1 hypothetical protein 3967925 8160170 ECBD_3795 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037967.1 3967749 D 866768 CDS YP_003037968.1 253775137 8160171 3968171..3970309 1 NC_012947.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 3970309 8160171 ECBD_3796 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic ribonucleoside triphosphate reductase YP_003037968.1 3968171 D 866768 CDS YP_003037969.1 253775138 8160172 3970468..3970932 1 NC_012947.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 3970932 nrdG 8160172 nrdG Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic ribonucleotide reductase-activating protein YP_003037969.1 3970468 D 866768 CDS YP_003037970.1 253775139 8160173 complement(3970977..3971363) 1 NC_012947.1 PFAM: cytochrome b562; KEGG: sfv:SFV_4255 cytochrome b(562); cytochrome b562 3971363 8160173 ECBD_3798 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome b562 YP_003037970.1 3970977 R 866768 CDS YP_003037971.1 253775140 8160174 complement(3971546..3972898) 1 NC_012947.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 3972898 8160174 ECBD_3799 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase PmbA YP_003037971.1 3971546 R 866768 CDS YP_003037972.1 253775141 8160175 3972993..3973544 1 NC_012947.1 PFAM: protein of unknown function DUF615; KEGG: ssn:SSON_4415 hypothetical protein; hypothetical protein 3973544 8160175 ECBD_3800 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037972.1 3972993 D 866768 CDS YP_003037973.1 253775142 8160176 complement(3973700..3975073) 1 NC_012947.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: elf:LF82_1383 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminop; UDP-N-acetylmuramate 3975073 8160176 ECBD_3801 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylmuramate YP_003037973.1 3973700 R 866768 CDS YP_003037974.1 253775143 8160177 3975249..3976247 1 NC_012947.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 3976247 8160177 ECBD_3802 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-1,6-bisphosphatase YP_003037974.1 3975249 D 866768 CDS YP_003037975.1 253775144 8160178 complement(3976280..3977275) 1 NC_012947.1 membrane component of a sugar ABC transporter system; inner membrane ABC transporter permease YjfF 3977275 8160178 ECBD_3803 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane ABC transporter permease YjfF YP_003037975.1 3976280 R 866768 CDS YP_003037976.1 253775145 8160179 complement(3977262..3978284) 1 NC_012947.1 PFAM: inner-membrane translocator; KEGG: elf:LF82_3716 inner membrane ABC transporter permease YtfT; inner-membrane translocator 3978284 8160179 ECBD_3804 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner-membrane translocator YP_003037976.1 3977262 R 866768 CDS YP_003037977.1 253775146 8160180 complement(3978298..3979800) 1 NC_012947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: elf:LF82_3715 uncharacterized ABC transporter ATP-binding protein YtfR; ABC transporter 3979800 8160180 ECBD_3805 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ABC transporter YP_003037977.1 3978298 R 866768 CDS YP_003037978.1 253775147 8160181 complement(3979940..3980896) 1 NC_012947.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E4856 sugar ABC transporter periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 3980896 8160181 ECBD_3806 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic binding protein/LacI transcriptional regulator YP_003037978.1 3979940 R 866768 CDS YP_003037979.1 253775148 8160182 3981206..3981736 1 NC_012947.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 3981736 8160182 ECBD_3807 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inorganic pyrophosphatase YP_003037979.1 3981206 D 866768 CDS YP_003037980.1 253775149 8160183 complement(3982116..3982457) 1 NC_012947.1 PFAM: AIG2 family protein; KEGG: sfv:SFV_4266 hypothetical protein; AIG2 family protein 3982457 8160183 ECBD_3808 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AIG2 family protein YP_003037980.1 3982116 R 866768 CDS YP_003037981.1 253775150 8160184 complement(3982460..3986239) 1 NC_012947.1 PFAM: protein of unknown function DUF490; KEGG: elf:LF82_3712 uncharacterized protein YtfN; hypothetical protein 3986239 8160184 ECBD_3809 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037981.1 3982460 R 866768 CDS YP_003037982.1 253775151 8160185 complement(3986236..3987969) 1 NC_012947.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: sbc:SbBS512_E4861 outer membrane protein, OMP85 family; surface antigen (D15) 3987969 8160185 ECBD_3810 Escherichia coli 'BL21-Gold(DE3)pLysS AG' surface antigen (D15) YP_003037982.1 3986236 R 866768 CDS YP_003037983.1 253775152 8160186 3988175..3988813 1 NC_012947.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 3988813 8160186 ECBD_3811 Escherichia coli 'BL21-Gold(DE3)pLysS AG' methionine sulfoxide reductase A YP_003037983.1 3988175 D 866768 CDS YP_003037984.1 253775153 8160187 3989136..3990479 1 NC_012947.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: elf:LF82_3710 UPF0053 inner membrane protein YtfL; hypothetical protein 3990479 8160187 ECBD_3812 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037984.1 3989136 D 866768 CDS YP_003037985.1 253775154 8160188 complement(3990541..3990747) 1 NC_012947.1 PFAM: protein of unknown function DUF1107; KEGG: efe:EFER_4276 hypothetical protein; hypothetical protein 3990747 8160188 ECBD_3813 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037985.1 3990541 R 866768 CDS YP_003037986.1 253775155 8160189 3991072..3991629 1 NC_012947.1 KEGG: elf:LF82_3708 uncharacterized protein YtfJ; hypothetical protein 3991629 8160189 ECBD_3814 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037986.1 3991072 D 866768 CDS YP_003037987.1 253775156 8160190 complement(3991619..3992359) 1 NC_012947.1 catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase 3992359 8160190 ECBD_3815 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenosine-3'(2'),5'-bisphosphate nucleotidase YP_003037987.1 3991619 R 866768 CDS YP_003037988.1 253775157 8160191 3992549..3994492 1 NC_012947.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 3994492 cpdB 8160191 cpdB Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_003037988.1 3992549 D 866768 CDS YP_003037989.1 253775158 8160192 complement(3994615..3994995) 1 NC_012947.1 PFAM: helix-turn-helix HxlR type; KEGG: sfv:SFV_4276 hypothetical protein; HxlR family transcriptional regulator 3994995 8160192 ECBD_3817 Escherichia coli 'BL21-Gold(DE3)pLysS AG' HxlR family transcriptional regulator YP_003037989.1 3994615 R 866768 CDS YP_003037990.1 253775159 8160193 3995084..3995944 1 NC_012947.1 PFAM: NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: sbo:SBO_4231 oxidoreductase; NmrA family protein 3995944 8160193 ECBD_3818 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NmrA family protein YP_003037990.1 3995084 D 866768 CDS YP_003037991.1 253775160 8160194 3996053..3997018 1 NC_012947.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ssn:SSON_4395 transmembrane subunit; hypothetical protein 3997018 8160194 ECBD_3819 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003037991.1 3996053 D 866768 CDS YP_003037992.1 253775161 8160195 3997126..3997788 1 NC_012947.1 Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein 3997788 8160195 ECBD_3820 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-sulfur cluster repair di-iron protein YP_003037992.1 3997126 D 866768 CDS YP_003037993.1 253775162 8160196 complement(3997833..3999245) 1 NC_012947.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 3999245 8160196 ECBD_3821 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-alanine/D-serine/glycine permease YP_003037993.1 3997833 R 866768 CDS YP_003037994.1 253775163 8160197 complement(3999554..4000174) 1 NC_012947.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4000174 8160197 ECBD_3822 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidyl-prolyl cis-trans isomerase YP_003037994.1 3999554 R 866768 CDS YP_003037995.1 253775164 8160198 4000393..4001031 1 NC_012947.1 PFAM: Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: sdy:SDY_4376 hypothetical protein; Opacity-associated protein A 4001031 8160198 ECBD_3823 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Opacity-associated protein A YP_003037995.1 4000393 D 866768 CDS YP_003037996.1 253775165 8160199 complement(4001015..4001662) 1 NC_012947.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E4747 TetR family transcriptional regulator; TetR family transcriptional regulator 4001662 8160199 ECBD_3824 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TetR family transcriptional regulator YP_003037996.1 4001015 R 866768 CDS YP_003037997.1 253775166 8160200 4001875..4002666 1 NC_012947.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4002666 8160200 ECBD_3825 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-ketoacyl-ACP reductase YP_003037997.1 4001875 D 866768 CDS YP_003037998.1 253775167 8160201 4002676..4003518 1 NC_012947.1 PFAM: xylose isomerase; KEGG: sbo:SBO_4242 hypothetical protein; xylose isomerase 4003518 8160201 ECBD_3826 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xylose isomerase YP_003037998.1 4002676 D 866768 CDS YP_003037999.1 253775168 8160202 4003528..4004304 1 NC_012947.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: sbo:SBO_4243 hypothetical protein; enoyl-CoA hydratase/isomerase 4004304 8160202 ECBD_3827 Escherichia coli 'BL21-Gold(DE3)pLysS AG' enoyl-CoA hydratase/isomerase YP_003037999.1 4003528 D 866768 CDS YP_003038000.1 253775169 8160203 4004314..4005855 1 NC_012947.1 PFAM: coenzyme A transferase; KEGG: sbc:SbBS512_E4742 CoA-transferase; coenzyme A transferase 4005855 8160203 ECBD_3828 Escherichia coli 'BL21-Gold(DE3)pLysS AG' coenzyme A transferase YP_003038000.1 4004314 D 866768 CDS YP_003038001.1 253775170 8160204 4005852..4007924 1 NC_012947.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: elf:LF82_p707 oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein 4007924 8160204 ECBD_3829 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003038001.1 4005852 D 866768 CDS YP_003038002.1 253775171 8160205 4008017..4009294 1 NC_012947.1 PFAM: major facilitator superfamily MFS_1; KEGG: elf:LF82_p706 hexuronate transporter; major facilitator superfamily MFS_1 4009294 8160205 ECBD_3830 Escherichia coli 'BL21-Gold(DE3)pLysS AG' major facilitator superfamily MFS_1 YP_003038002.1 4008017 D 866768 CDS YP_003038003.1 253775172 8160206 complement(4009396..4009845) 1 NC_012947.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4009845 rplI 8160206 rplI Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L9 YP_003038003.1 4009396 R 866768 CDS YP_003038004.1 253775173 8160207 complement(4009887..4010114) 1 NC_012947.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4010114 rpsR 8160207 rpsR Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S18 YP_003038004.1 4009887 R 866768 CDS YP_003038005.1 253775174 8160208 complement(4010119..4010433) 1 NC_012947.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4010433 8160208 ECBD_3833 Escherichia coli 'BL21-Gold(DE3)pLysS AG' primosomal replication protein N YP_003038005.1 4010119 R 866768 CDS YP_003038006.1 253775175 8158577 complement(4010440..4010835) 1 NC_012947.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4010835 rpsF 8158577 rpsF Escherichia coli 'BL21-Gold(DE3)pLysS AG' 30S ribosomal protein S6 YP_003038006.1 4010440 R 866768 CDS YP_003038007.1 253775176 8158578 4011163..4011438 1 NC_012947.1 PFAM: protein of unknown function DUF1471; KEGG: sfv:SFV_4355 hypothetical protein; hypothetical protein 4011438 8158578 ECBD_3835 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038007.1 4011163 D 866768 CDS YP_003038008.1 253775177 8158406 complement(4011567..4012253) 1 NC_012947.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4012253 sgaE 8158406 sgaE Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-ribulose-5-phosphate 4-epimerase YP_003038008.1 4011567 R 866768 CDS YP_003038009.1 253775178 8158407 complement(4012253..4013107) 1 NC_012947.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4013107 8158407 ECBD_3837 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-xylulose 5-phosphate 3-epimerase YP_003038009.1 4012253 R 866768 CDS YP_003038010.1 253775179 8158408 complement(4013117..4013767) 1 NC_012947.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4013767 ulaD 8158408 ulaD Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-keto-L-gulonate-6-phosphate decarboxylase YP_003038010.1 4013117 R 866768 CDS YP_003038011.1 253775180 8158409 complement(4013781..4014245) 1 NC_012947.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4014245 8158409 ECBD_3839 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system L-ascorbate-specific transporter subunit IIA YP_003038011.1 4013781 R 866768 CDS YP_003038012.1 253775181 8158410 complement(4014255..4014560) 1 NC_012947.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4014560 8158410 ECBD_3840 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system L-ascorbate-specific transporter subunit IIB YP_003038012.1 4014255 R 866768 CDS YP_003038013.1 253775182 8158411 complement(4014576..4015973) 1 NC_012947.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4015973 ulaA 8158411 ulaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system ascorbate-specific transporter subunit IIC YP_003038013.1 4014576 R 866768 CDS YP_003038014.1 253775183 8158412 4016328..4017392 1 NC_012947.1 KEGG: ssn:SSON_4374 L-ascorbate 6-phosphate lactonase; L-ascorbate 6-phosphate lactonase 4017392 8158412 ECBD_3842 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-ascorbate 6-phosphate lactonase YP_003038014.1 4016328 D 866768 CDS YP_003038015.1 253775184 8158413 4017500..4018255 1 NC_012947.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 4018255 8158413 ECBD_3843 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional repressor UlaR YP_003038015.1 4017500 D 866768 CDS YP_003038016.1 253775185 8158414 complement(4018252..4019001) 1 NC_012947.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4019001 8158414 ECBD_3844 Escherichia coli 'BL21-Gold(DE3)pLysS AG' esterase YP_003038016.1 4018252 R 866768 CDS YP_003038017.1 253775186 8158415 4019183..4019512 1 NC_012947.1 in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; biofilm stress and motility protein A 4019512 8158415 ECBD_3845 Escherichia coli 'BL21-Gold(DE3)pLysS AG' biofilm stress and motility protein A YP_003038017.1 4019183 D 866768 CDS YP_003038018.1 253775187 8158416 4019661..4019936 1 NC_012947.1 PFAM: protein of unknown function DUF1471; KEGG: sfv:SFV_4344 hypothetical protein; hypothetical protein 4019936 8158416 ECBD_3846 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038018.1 4019661 D 866768 CDS YP_003038019.1 253775188 8158417 complement(4020053..4021678) 1 NC_012947.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4021678 8158417 ECBD_3847 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isovaleryl CoA dehydrogenase YP_003038019.1 4020053 R 866768 CDS YP_003038020.1 253775189 8158418 complement(4021762..4022925) 1 NC_012947.1 PFAM: glutathionylspermidine synthase; KEGG: sfx:S4608 synthetase/amidase; glutathionylspermidine synthase 4022925 8158418 ECBD_3848 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutathionylspermidine synthase YP_003038020.1 4021762 R 866768 CDS YP_003038021.1 253775190 8158419 complement(4022928..4023566) 1 NC_012947.1 PFAM: protein of unknown function DUF1190; KEGG: sfv:SFV_4341 hypothetical protein; hypothetical protein 4023566 8158419 ECBD_3849 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038021.1 4022928 R 866768 CDS YP_003038022.1 253775191 8158420 complement(4023576..4023974) 1 NC_012947.1 PFAM: protein of unknown function DUF350; hypothetical protein 4023974 8158420 ECBD_3850 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038022.1 4023576 R 866768 CDS YP_003038023.1 253775192 8158421 complement(4023992..4024651) 1 NC_012947.1 KEGG: sbo:SBO_4272 hypothetical protein; hypothetical protein 4024651 8158421 ECBD_3851 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038023.1 4023992 R 866768 CDS YP_003038024.1 253775193 8158422 complement(4024702..4025400) 1 NC_012947.1 PFAM: PspA/IM30 family protein; phage shock protein A, PspA 4025400 8158422 ECBD_3852 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage shock protein A, PspA YP_003038024.1 4024702 R 866768 CDS YP_003038025.1 253775194 8158423 complement(4025419..4025820) 1 NC_012947.1 hypothetical protein 4025820 8158423 ECBD_3853 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038025.1 4025419 R 866768 CDS YP_003038026.1 253775195 8158424 complement(4025947..4026678) 1 NC_012947.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4026678 8158424 ECBD_3854 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA (guanosine-2'-O-)-methyltransferase YP_003038026.1 4025947 R 866768 CDS YP_003038027.1 253775196 8158425 complement(4026858..4029299) 1 NC_012947.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4029299 8158425 ECBD_3855 Escherichia coli 'BL21-Gold(DE3)pLysS AG' exoribonuclease R YP_003038027.1 4026858 R 866768 CDS YP_003038028.1 253775197 8158426 complement(4029338..4029763) 1 NC_012947.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4029763 8158426 ECBD_3856 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional repressor NsrR YP_003038028.1 4029338 R 866768 CDS YP_003038029.1 253775198 8158427 complement(4029968..4031266) 1 NC_012947.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4031266 8158427 ECBD_3857 Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenylosuccinate synthetase YP_003038029.1 4029968 R 866768 CDS YP_003038030.1 253775199 8158428 complement(4031370..4031567) 1 NC_012947.1 KEGG: sfv:SFV_4334 hypothetical protein; hypothetical protein 4031567 8158428 ECBD_3858 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038030.1 4031370 R 866768 CDS YP_003038031.1 253775200 8158429 complement(4031649..4032653) 1 NC_012947.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4032653 8158429 ECBD_3859 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FtsH protease regulator HflC YP_003038031.1 4031649 R 866768 CDS YP_003038032.1 253775201 8158430 complement(4032656..4033915) 1 NC_012947.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4033915 8158430 ECBD_3860 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FtsH protease regulator HflK YP_003038032.1 4032656 R 866768 CDS YP_003038033.1 253775202 8158431 complement(4034001..4035281) 1 NC_012947.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4035281 8158431 ECBD_3861 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTPase HflX YP_003038033.1 4034001 R 866768 CDS YP_003038034.1 253775203 8158432 complement(4035357..4035665) 1 NC_012947.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4035665 hfq 8158432 hfq Escherichia coli 'BL21-Gold(DE3)pLysS AG' RNA-binding protein Hfq YP_003038034.1 4035357 R 866768 CDS YP_003038035.1 253775204 8158433 complement(4035751..4036701) 1 NC_012947.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4036701 miaA 8158433 miaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA delta(2)-isopentenylpyrophosphate transferase YP_003038035.1 4035751 R 866768 CDS YP_003038036.1 253775205 8158434 complement(4036694..4038541) 1 NC_012947.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4038541 mutL 8158434 mutL Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA mismatch repair protein YP_003038036.1 4036694 R 866768 CDS YP_003038037.1 253775206 8158435 complement(4038551..4039888) 1 NC_012947.1 KEGG: ssn:SSON_4354 N-acetylmuramoyl-L-alanine amidase II; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; N-acetylmuramoyl-l-alanine amidase II 4039888 8158435 ECBD_3865 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetylmuramoyl-l-alanine amidase II YP_003038037.1 4038551 R 866768 CDS YP_003038038.1 253775207 8158436 complement(4039907..4040368) 1 NC_012947.1 possibly involved in cell wall synthesis; ATPase 4040368 8158436 ECBD_3866 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATPase YP_003038038.1 4039907 R 866768 CDS YP_003038039.1 253775208 8158437 complement(4040340..4041887) 1 NC_012947.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: ssn:SSON_4351 hypothetical protein; hypothetical protein 4041887 8158437 ECBD_3867 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038039.1 4040340 R 866768 CDS YP_003038040.1 253775209 8158438 4041886..4043025 1 NC_012947.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: sbc:SbBS512_E4697 iron-sulfur cluster binding protein; iron-sulfur cluster binding protein 4043025 8158438 ECBD_3868 Escherichia coli 'BL21-Gold(DE3)pLysS AG' iron-sulfur cluster binding protein YP_003038040.1 4041886 D 866768 CDS YP_003038041.1 253775210 8158442 complement(4043804..4044349) 1 NC_012947.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4044349 8158442 ECBD_3869 Escherichia coli 'BL21-Gold(DE3)pLysS AG' oligoribonuclease YP_003038041.1 4043804 R 866768 CDS YP_003038042.1 253775211 8158443 4044444..4045496 1 NC_012947.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4045496 8158443 ECBD_3870 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosome-associated GTPase YP_003038042.1 4044444 D 866768 CDS YP_003038043.1 253775212 8158444 4045593..4046561 1 NC_012947.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4046561 psd 8158444 psd Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphatidylserine decarboxylase YP_003038043.1 4045593 D 866768 CDS YP_003038044.1 253775213 8158445 4046583..4049906 1 NC_012947.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sbo:SBO_4298 predicted mechanosensitive channel; hypothetical protein 4049906 8158445 ECBD_3872 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038044.1 4046583 D 866768 CDS YP_003038045.1 253775214 8158446 complement(4050056..4051558) 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: elf:LF82_3454 inner membrane transporter YjeM; amino acid permease-associated region 4051558 8158446 ECBD_3873 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid permease-associated region YP_003038045.1 4050056 R 866768 CDS YP_003038046.1 253775215 8158447 complement(4051777..4052754) 1 NC_012947.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4052754 8158447 ECBD_3874 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysyl-tRNA synthetase YP_003038046.1 4051777 R 866768 CDS YP_003038047.1 253775216 8158448 4053079..4054887 1 NC_012947.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4054887 8158448 ECBD_3875 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fumarate reductase flavoprotein subunit YP_003038047.1 4053079 D 866768 CDS YP_003038048.1 253775217 8158449 4054880..4055614 1 NC_012947.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4055614 8158449 ECBD_3876 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fumarate reductase iron-sulfur subunit YP_003038048.1 4054880 D 866768 CDS YP_003038049.1 253775218 8158450 4055625..4056020 1 NC_012947.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 4056020 8158450 ECBD_3877 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fumarate reductase subunit C YP_003038049.1 4055625 D 866768 CDS YP_003038050.1 253775219 8158451 4056031..4056390 1 NC_012947.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4056390 8158451 ECBD_3878 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fumarate reductase subunit D YP_003038050.1 4056031 D 866768 CDS YP_003038051.1 253775220 8158452 4056453..4057586 1 NC_012947.1 PFAM: beta-lactamase; KEGG: sdy:SDY_4394 beta-lactamase; beta-lactamase 4057586 ampC 8158452 ampC Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-lactamase YP_003038051.1 4056453 D 866768 CDS YP_003038052.1 253775221 8158453 4057675..4058211 1 NC_012947.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4058211 8158453 ECBD_3880 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane lipoprotein Blc YP_003038052.1 4057675 D 866768 CDS YP_003038053.1 253775222 8158454 complement(4058205..4058522) 1 NC_012947.1 member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4058522 8158454 ECBD_3881 Escherichia coli 'BL21-Gold(DE3)pLysS AG' quaternary ammonium compound-resistance protein SugE YP_003038053.1 4058205 R 866768 CDS YP_003038054.1 253775223 8158455 complement(4058698..4058844) 1 NC_012947.1 PFAM: entericidin EcnAB; KEGG: sfv:SFV_4306 entericidin B membrane lipoprotein; entericidin B membrane lipoprotein 4058844 8158455 ECBD_3882 Escherichia coli 'BL21-Gold(DE3)pLysS AG' entericidin B membrane lipoprotein YP_003038054.1 4058698 R 866768 CDS YP_003038055.1 253775224 8158456 4058988..4059086 1 NC_012947.1 hypothetical protein 4059086 8158456 ECBD_3883 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038055.1 4058988 D 866768 CDS YP_003038056.1 253775225 8158457 complement(4059132..4059698) 1 NC_012947.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4059698 8158457 ECBD_3884 Escherichia coli 'BL21-Gold(DE3)pLysS AG' elongation factor P YP_003038056.1 4059132 R 866768 CDS YP_003038057.1 253775226 8158458 4059740..4060768 1 NC_012947.1 KEGG: efe:EFER_4198 lysine aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM protein; lysine 2,3-aminomutase YodO family protein 4060768 8158458 ECBD_3885 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysine 2,3-aminomutase YodO family protein YP_003038057.1 4059740 D 866768 CDS YP_003038058.1 253775227 8158459 4061163..4062032 1 NC_012947.1 KEGG: sbc:SbBS512_E4674 hypothetical protein; hypothetical protein 4062032 8158459 ECBD_3886 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038058.1 4061163 D 866768 CDS YP_003038059.1 253775228 8158460 complement(4062225..4062578) 1 NC_012947.1 KEGG: sdy:SDY_4450 hypothetical protein; hypothetical protein 4062578 8158460 ECBD_3887 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038059.1 4062225 R 866768 CDS YP_003038060.1 253775229 8158461 complement(4062716..4064362) 1 NC_012947.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4064362 groEL 8158461 groEL Escherichia coli 'BL21-Gold(DE3)pLysS AG' chaperonin GroEL YP_003038060.1 4062716 R 866768 CDS YP_003038061.1 253775230 8158462 complement(4064406..4064699) 1 NC_012947.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4064699 groES 8158462 groES Escherichia coli 'BL21-Gold(DE3)pLysS AG' co-chaperonin GroES YP_003038061.1 4064406 R 866768 CDS YP_003038062.1 253775231 8158463 4064975..4066231 1 NC_012947.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4066231 8158463 ECBD_3890 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane protein YjeH YP_003038062.1 4064975 D 866768 CDS YP_003038063.1 253775232 8158464 complement(4066247..4066723) 1 NC_012947.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA 4066723 fxsA 8158464 fxsA Escherichia coli 'BL21-Gold(DE3)pLysS AG' FxsA YP_003038063.1 4066247 R 866768 CDS YP_003038064.1 253775233 8158465 4067060..4068496 1 NC_012947.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4068496 aspA 8158465 aspA Escherichia coli 'BL21-Gold(DE3)pLysS AG' aspartate ammonia-lyase YP_003038064.1 4067060 D 866768 CDS YP_003038065.1 253775234 8158466 4068614..4069915 1 NC_012947.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4069915 8158466 ECBD_3893 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic C4-dicarboxylate transporter YP_003038065.1 4068614 D 866768 CDS YP_003038066.1 253775235 8158467 4070031..4070369 1 NC_012947.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4070369 8158467 ECBD_3894 Escherichia coli 'BL21-Gold(DE3)pLysS AG' divalent-cation tolerance protein CutA YP_003038066.1 4070031 D 866768 CDS YP_003038067.1 253775236 8158468 4070345..4072042 1 NC_012947.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor 4072042 dipZ 8158468 dipZ Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiol:disulfide interchange protein precursor YP_003038067.1 4070345 D 866768 CDS YP_003038068.1 253775237 8158469 4072079..4072654 1 NC_012947.1 PFAM: regulatory protein TetR; KEGG: ssn:SSON_4318 transcriptional regulator; transcriptional regulator 4072654 8158469 ECBD_3896 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator YP_003038068.1 4072079 D 866768 CDS YP_003038069.1 253775238 8158471 4073453..4074991 1 NC_012947.1 regulates the cadBA operon; CadC family transcriptional regulator 4074991 8158471 ECBD_3897 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CadC family transcriptional regulator YP_003038069.1 4073453 D 866768 CDS YP_003038070.1 253775239 8158472 4075357..4076691 1 NC_012947.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 4076691 cadB 8158472 cadB Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysine/cadaverine antiporter YP_003038070.1 4075357 D 866768 CDS YP_003038071.1 253775240 8158473 4076771..4078918 1 NC_012947.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; lysine decarboxylase 4078918 8158473 ECBD_3899 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysine decarboxylase YP_003038071.1 4076771 D 866768 CDS YP_003038072.1 253775241 8158474 4078977..4080434 1 NC_012947.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: ssn:SSON_4307 peptide transporter; amino acid/peptide transporter 4080434 8158474 ECBD_3900 Escherichia coli 'BL21-Gold(DE3)pLysS AG' amino acid/peptide transporter YP_003038072.1 4078977 D 866768 CDS YP_003038073.1 253775242 8158475 4080671..4082188 1 NC_012947.1 class II; inducible; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; induced by high temperature, anaerobiosis, and low pH; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 4082188 8158475 ECBD_3901 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysyl-tRNA synthetase YP_003038073.1 4080671 D 866768 CDS YP_003038074.1 253775243 8158476 complement(4082307..4082480) 1 NC_012947.1 KEGG: elf:LF82_3446 uncharacterized protein YjdO; hypothetical protein 4082480 8158476 ECBD_3902 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038074.1 4082307 R 866768 CDS YP_003038075.1 253775244 8158477 complement(4082508..4082804) 1 NC_012947.1 KEGG: ssn:SSON_4305 hypothetical protein; hypothetical protein 4082804 8158477 ECBD_3903 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038075.1 4082508 R 866768 CDS YP_003038076.1 253775245 8158478 complement(4083031..4083303) 1 NC_012947.1 KEGG: sdy:SDY_4240 hypothetical protein; hypothetical protein 4083303 8158478 ECBD_3904 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038076.1 4083031 R 866768 CDS YP_003038077.1 253775246 8158479 complement(4083315..4083545) 1 NC_012947.1 PFAM: protein of unknown function DUF1271; hypothetical protein 4083545 8158479 ECBD_3905 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038077.1 4083315 R 866768 CDS YP_003038078.1 253775247 8158481 4085359..4086078 1 NC_012947.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DcuR family transcriptional regulator 4086078 8158481 ECBD_3907 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DcuR family transcriptional regulator YP_003038078.1 4085359 D 866768 CDS YP_003038079.1 253775248 8158482 4086649..4087989 1 NC_012947.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4087989 8158482 ECBD_3908 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anaerobic C4-dicarboxylate transporter YP_003038079.1 4086649 D 866768 CDS YP_003038080.1 253775249 8158483 4088067..4089713 1 NC_012947.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: sdy:SDY_4231 fumarase B; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta 4089713 8158483 ECBD_3909 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta YP_003038080.1 4088067 D 866768 CDS YP_003038081.1 253775250 8158484 4089836..4090465 1 NC_012947.1 KEGG: sbo:SBO_4325 hypothetical protein; hypothetical protein 4090465 8158484 ECBD_3910 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038081.1 4089836 D 866768 CDS YP_003038082.1 253775251 8158485 complement(4090604..4092013) 1 NC_012947.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; melibiose:sodium symporter 4092013 8158485 ECBD_3911 Escherichia coli 'BL21-Gold(DE3)pLysS AG' melibiose:sodium symporter YP_003038082.1 4090604 R 866768 CDS YP_003038083.1 253775252 8158486 complement(4092128..4093483) 1 NC_012947.1 PFAM: glycoside hydrolase family 4; glycoside hydrolase family 4 4093483 8158486 ECBD_3912 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase family 4 YP_003038083.1 4092128 R 866768 CDS YP_003038084.1 253775253 8156586 4093766..4094674 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; DNA-binding transcriptional regulator MelR 4094674 8156586 ECBD_3913 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator MelR YP_003038084.1 4093766 D 866768 CDS YP_003038085.1 253775254 8156587 4094870..4097140 1 NC_012947.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; Arginine decarboxylase 4097140 8156587 ECBD_3914 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Arginine decarboxylase YP_003038085.1 4094870 D 866768 CDS YP_003038086.1 253775255 8156588 4097465..4098226 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sfv:SFV_4114 AraC-type regulatory protein; AraC family transcriptional regulator 4098226 8156588 ECBD_3915 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003038086.1 4097465 D 866768 CDS YP_003038087.1 253775256 8156589 4098363..4099700 1 NC_012947.1 PFAM: amino acid permease-associated region; KEGG: ssn:SSON_4290 arginine:agmatin antiporter; arginine:agmatin antiporter 4099700 8156589 ECBD_3916 Escherichia coli 'BL21-Gold(DE3)pLysS AG' arginine:agmatin antiporter YP_003038087.1 4098363 D 866768 CDS YP_003038088.1 253775257 8156590 4099804..4101447 1 NC_012947.1 with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein 4101447 8156590 ECBD_3917 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cell division protein YP_003038088.1 4099804 D 866768 CDS YP_003038089.1 253775258 8156591 4101444..4102112 1 NC_012947.1 response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4102112 8156591 ECBD_3918 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator BasR YP_003038089.1 4101444 D 866768 CDS YP_003038090.1 253775259 8156592 4102113..4103213 1 NC_012947.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfx:S3619 sensor protein BasS/PmrB; sensor protein BasS/PmrB 4103213 8156592 ECBD_3919 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensor protein BasS/PmrB YP_003038090.1 4102113 D 866768 CDS YP_003038091.1 253775260 8156593 complement(4103390..4104892) 1 NC_012947.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: general substrate transporter; Osmosensory transporter coiled coil; major facilitator superfamily MFS_1; KEGG: sdy:SDY_4102 proline/glycine betaine transporter; proline/glycine betaine transporter 4104892 8156593 ECBD_3920 Escherichia coli 'BL21-Gold(DE3)pLysS AG' proline/glycine betaine transporter YP_003038091.1 4103390 R 866768 CDS YP_003038092.1 253775261 8156594 complement(4105156..4106034) 1 NC_012947.1 KEGG: sfv:SFV_4120 hypothetical protein; hypothetical protein 4106034 8156594 ECBD_3921 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038092.1 4105156 R 866768 CDS YP_003038093.1 253775262 8156595 complement(4106031..4108259) 1 NC_012947.1 KEGG: sfv:SFV_4121 hypothetical protein; hypothetical protein 4108259 8156595 ECBD_3922 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038093.1 4106031 R 866768 CDS YP_003038094.1 253775263 8156596 4108660..4108995 1 NC_012947.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: sfv:SFV_4122 hypothetical protein; hypothetical protein 4108995 8156596 ECBD_3923 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038094.1 4108660 D 866768 CDS YP_003038095.1 253775264 8156597 4109553..4109996 1 NC_012947.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: sfv:SFV_4123 hypothetical protein; hypothetical protein 4109996 8156597 ECBD_3924 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038095.1 4109553 D 866768 CDS YP_003038096.1 253775265 8156598 4110129..4110917 1 NC_012947.1 KEGG: ssn:SSON_4281 phosphonate/organophosphate ester transporter subunit; TIGRFAM: phosphonate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA; phosphonate/organophosphate ester transporter subunit 4110917 8156598 ECBD_3925 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate/organophosphate ester transporter subunit YP_003038096.1 4110129 D 866768 CDS YP_003038097.1 253775266 8156599 4110942..4111958 1 NC_012947.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: sbo:SBO_4130 periplasmic binding protein component of Pn transporter; phosphonate ABC transporter substrate-binding protein 4111958 8156599 ECBD_3926 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate ABC transporter substrate-binding protein YP_003038097.1 4110942 D 866768 CDS YP_003038098.1 253775267 8156600 4112064..4112843 1 NC_012947.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sdy:SDY_4113 membrane channel protein component of Pn transporter; phosphonate ABC transporter permease 4112843 8156600 ECBD_3927 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate ABC transporter permease YP_003038098.1 4112064 D 866768 CDS YP_003038099.1 253775268 8156601 4112864..4113589 1 NC_012947.1 may be involved in phosphonate uptake and biodegradation; phosphonate metabolism transcriptional regulator PhnF 4113589 8156601 ECBD_3928 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate metabolism transcriptional regulator PhnF YP_003038099.1 4112864 D 866768 CDS YP_003038100.1 253775269 8156602 4113590..4114042 1 NC_012947.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: ssn:SSON_4277 phosphonate metabolism; phosphonate C-P lyase system protein PhnG 4114042 8156602 ECBD_3929 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate C-P lyase system protein PhnG YP_003038100.1 4113590 D 866768 CDS YP_003038101.1 253775270 8156603 4114039..4114623 1 NC_012947.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: sdy:SDY_4116 carbon-phosphorus lyase complex subunit; carbon-phosphorus lyase complex subunit 4114623 phnH 8156603 phnH Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbon-phosphorus lyase complex subunit YP_003038101.1 4114039 D 866768 CDS YP_003038102.1 253775271 8156604 4114623..4115687 1 NC_012947.1 PFAM: phosphonate metabolism; KEGG: ssn:SSON_4275 phosphonate metabolism; phosphonate metabolism 4115687 8156604 ECBD_3931 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate metabolism YP_003038102.1 4114623 D 866768 CDS YP_003038103.1 253775272 8156605 4115680..4116525 1 NC_012947.1 PFAM: phosphonate metabolism PhnJ; KEGG: sbo:SBO_4124 PhnJ; phosphonate metabolism PhnJ 4116525 8156605 ECBD_3932 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate metabolism PhnJ YP_003038103.1 4115680 D 866768 CDS YP_003038104.1 253775273 8156606 4116522..4117280 1 NC_012947.1 KEGG: ssn:SSON_4273 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: ATPase AAA; phosphonate C-P lyase system protein PhnK 4117280 phnK 8156606 phnK Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate C-P lyase system protein PhnK YP_003038104.1 4116522 D 866768 CDS YP_003038105.1 253775274 8156607 4117391..4118071 1 NC_012947.1 KEGG: sdy:SDY_4120 ATP-binding component of phosphonate transport; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: ATPase AAA; phosphonate C-P lyase system protein PhnL 4118071 8156607 ECBD_3934 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate C-P lyase system protein PhnL YP_003038105.1 4117391 D 866768 CDS YP_003038106.1 253775275 8156608 4118068..4119204 1 NC_012947.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; amidohydrolase; KEGG: ssn:SSON_4271 phosphonate metabolism; phosphonate metabolism protein PhnM 4119204 8156608 ECBD_3935 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphonate metabolism protein PhnM YP_003038106.1 4118068 D 866768 CDS YP_003038107.1 253775276 8156609 4119204..4119761 1 NC_012947.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: ssn:SSON_4270 ribose 1,5-bisphosphokinase; ribose 1,5-bisphosphokinase 4119761 8156609 ECBD_3936 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribose 1,5-bisphosphokinase YP_003038107.1 4119204 D 866768 CDS YP_003038108.1 253775277 8156610 4119748..4120182 1 NC_012947.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase 4120182 8156610 ECBD_3937 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aminoalkylphosphonic acid N-acetyltransferase YP_003038108.1 4119748 D 866768 CDS YP_003038109.1 253775278 8156611 4120184..4120942 1 NC_012947.1 required for the use of phosphonates and phosphite as phosphorus sources; carbon-phosphorus lyase complex accessory protein 4120942 phnP 8156611 phnP Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbon-phosphorus lyase complex accessory protein YP_003038109.1 4120184 D 866768 CDS YP_003038110.1 253775279 8156612 complement(4121089..4121418) 1 NC_012947.1 KEGG: sbo:SBO_4117 hypothetical protein; hypothetical protein 4121418 8156612 ECBD_3939 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038110.1 4121089 R 866768 CDS YP_003038111.1 253775280 8156613 complement(4121487..4121936) 1 NC_012947.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 4121936 8156613 ECBD_3940 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribose-5-phosphate isomerase B YP_003038111.1 4121487 R 866768 CDS YP_003038112.1 253775281 8156614 4122295..4123185 1 NC_012947.1 involved in rpiB and als operon repression; DNA-binding transcriptional repressor RpiR 4123185 8156614 ECBD_3941 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor RpiR YP_003038112.1 4122295 D 866768 CDS YP_003038113.1 253775282 8156615 4123244..4124179 1 NC_012947.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: elf:LF82_0076 D-allose-binding periplasmic protein; D-allose transporter subunit 4124179 8156615 ECBD_3942 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-allose transporter subunit YP_003038113.1 4123244 D 866768 CDS YP_003038114.1 253775283 8156616 4124306..4125838 1 NC_012947.1 with AlsBC acts to import allose into the cell; AlsA contain 2 ATP-binding domains; D-allose transporter ATP-binding protein 4125838 8156616 ECBD_3943 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-allose transporter ATP-binding protein YP_003038114.1 4124306 D 866768 CDS YP_003038115.1 253775284 8156617 4125817..4126797 1 NC_012947.1 PFAM: inner-membrane translocator; KEGG: elf:LF82_0077 D-allose transporter permease AlsC; D-allose transporter subunit 4126797 8156617 ECBD_3944 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-allose transporter subunit YP_003038115.1 4125817 D 866768 CDS YP_003038116.1 253775285 8156618 4126808..4127503 1 NC_012947.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: elf:LF82_0078 D-allulose-6-phosphate 3-epimerase; allulose-6-phosphate 3-epimerase 4127503 8156618 ECBD_3945 Escherichia coli 'BL21-Gold(DE3)pLysS AG' allulose-6-phosphate 3-epimerase YP_003038116.1 4126808 D 866768 CDS YP_003038117.1 253775286 8156619 4127487..4128416 1 NC_012947.1 PFAM: ROK family protein; KEGG: elf:LF82_0079 D-allose kinase; D-allose kinase 4128416 8156619 ECBD_3946 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-allose kinase YP_003038117.1 4127487 D 866768 CDS YP_003038118.1 253775287 8156620 4128689..4130674 1 NC_012947.1 PFAM: beta-lactamase; KEGG: elf:LF82_3435 uncharacterized protein YjcS; beta-lactamase 4130674 8156620 ECBD_3947 Escherichia coli 'BL21-Gold(DE3)pLysS AG' beta-lactamase YP_003038118.1 4128689 D 866768 CDS YP_003038119.1 253775288 8156621 4130883..4131158 1 NC_012947.1 KEGG: sbo:SBO_4114 formate dehydrogenase H; formate dehydrogenase H 4131158 8156621 ECBD_3948 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase H YP_003038119.1 4130883 D 866768 CDS YP_003038120.1 253775289 8156622 4131177..4132208 1 NC_012947.1 with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance protein MdtN 4132208 8156622 ECBD_3949 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug resistance protein MdtN YP_003038120.1 4131177 D 866768 CDS YP_003038121.1 253775290 8156623 4132208..4134259 1 NC_012947.1 possibly part of a tripartite efflux system composed of MdtN, MdtO and MdtP which could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug efflux system protein MdtO 4134259 8156623 ECBD_3950 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system protein MdtO YP_003038121.1 4132208 D 866768 CDS YP_003038122.1 253775291 8156624 4134256..4135722 1 NC_012947.1 part of a multidrug efflux system involved in resistance to acriflavin, puromycin, erytjhromycin and tetraphenylarsonium chloride; member of the outer membrane factor (OMF) family; outer membrane efflux protein MdtP 4135722 8156624 ECBD_3951 Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane efflux protein MdtP YP_003038122.1 4134256 D 866768 CDS YP_003038123.1 253775292 8156625 4135920..4136339 1 NC_012947.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: efe:EFER_4292 formate dehydrogenase-H, selenopolypeptide subunit; molybdopterin oxidoreductase Fe4S4 region 4136339 8156625 ECBD_3952 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin oxidoreductase Fe4S4 region YP_003038123.1 4135920 D 866768 CDS YP_003038124.1 253775293 8156626 4136388..4138067 1 NC_012947.1 TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase, subunit alpha 4138067 8156626 ECBD_3953 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase, subunit alpha YP_003038124.1 4136388 D 866768 CDS YP_003038125.1 253775294 8156627 4138161..4138850 1 NC_012947.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: sfv:SFV_4133 hypothetical protein; Sel1 domain protein repeat-containing protein 4138850 8156627 ECBD_3954 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Sel1 domain protein repeat-containing protein YP_003038125.1 4138161 D 866768 CDS YP_003038126.1 253775295 8156628 complement(4139267..4140580) 1 NC_012947.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transporter; glutamate/aspartate:proton symporter 4140580 gltP 8156628 gltP Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate/aspartate:proton symporter YP_003038126.1 4139267 R 866768 CDS YP_003038127.1 253775296 8156629 complement(4140922..4141518) 1 NC_012947.1 PFAM: hypotheticalprotein; SMART: hypothetical protein; KEGG: sfv:SFV_4135 formate-dependent nitrite reductase complex subunit NrfG; formate-dependent nitrite reductase complex subunit NrfG 4141518 8156629 ECBD_3956 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate-dependent nitrite reductase complex subunit NrfG YP_003038127.1 4140922 R 866768 CDS YP_003038128.1 253775297 8156630 complement(4141515..4141898) 1 NC_012947.1 TIGRFAM: cytochrome C nitrite reductase, accessory protein NrfF; PFAM: cytochrome C biogenesis protein; KEGG: sbc:SbBS512_E4596 formate-dependent nitrite reductase complex, NrfF subunit; formate-dependent nitrite reductase complex subunit NrfF 4141898 8156630 ECBD_3957 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate-dependent nitrite reductase complex subunit NrfF YP_003038128.1 4141515 R 866768 CDS YP_003038129.1 253775298 8156631 complement(4141891..4143573) 1 NC_012947.1 with NrfF and NrfG catalyzes the insertion of heme into cytochrome C552; heme lyase subunit NrfE 4143573 8156631 ECBD_3958 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heme lyase subunit NrfE YP_003038129.1 4141891 R 866768 CDS YP_003038130.1 253775299 8156632 complement(4143629..4144585) 1 NC_012947.1 TIGRFAM: cytochrome C nitrite reductase, NrfD subunit; PFAM: polysulphide reductase NrfD; KEGG: ssn:SSON_4254 formate-dependent nitrate reductase complex transmembrane protein; cytochrome C nitrite reductase, NrfD subunit 4144585 8156632 ECBD_3959 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C nitrite reductase, NrfD subunit YP_003038130.1 4143629 R 866768 CDS YP_003038131.1 253775300 8156633 complement(4144582..4145253) 1 NC_012947.1 TIGRFAM: cytochrome C nitrite reductase, Fe-S protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_4139 formate-dependent nitrite reductase; cytochrome C nitrite reductase, Fe-S protein 4145253 8156633 ECBD_3960 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C nitrite reductase, Fe-S protein YP_003038131.1 4144582 R 866768 CDS YP_003038132.1 253775301 8156634 complement(4145250..4145816) 1 NC_012947.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome C nitrite reductase pentaheme subunit 4145816 8156634 ECBD_3961 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C nitrite reductase pentaheme subunit YP_003038132.1 4145250 R 866768 CDS YP_003038133.1 253775302 8156635 complement(4145861..4147297) 1 NC_012947.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome C552 4147297 nrfA 8156635 nrfA Escherichia coli 'BL21-Gold(DE3)pLysS AG' cytochrome C552 YP_003038133.1 4145861 R 866768 CDS YP_003038134.1 253775303 8156636 4147690..4149648 1 NC_012947.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4149648 8156636 ECBD_3963 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetyl-CoA synthetase YP_003038134.1 4147690 D 866768 CDS YP_003038135.1 253775304 8156637 4149849..4150163 1 NC_012947.1 PFAM: protein of unknown function DUF485; KEGG: sbc:SbBS512_E4587 hypothetical protein; hypothetical protein 4150163 8156637 ECBD_3964 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038135.1 4149849 D 866768 CDS YP_003038136.1 253775305 8156638 4150160..4151809 1 NC_012947.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4151809 actP 8156638 actP Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetate permease YP_003038136.1 4150160 D 866768 CDS YP_003038137.1 253775306 8156640 complement(4153434..4155083) 1 NC_012947.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: sdy:SDY_4502 hypothetical protein; Na+/H+ antiporter 4155083 8156640 ECBD_3967 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Na+/H+ antiporter YP_003038137.1 4153434 R 866768 CDS YP_003038138.1 253775307 8156641 complement(4155235..4156584) 1 NC_012947.1 PFAM: xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: sdy:SDY_4503 hypothetical protein; xanthine/uracil/vitamin C permease 4156584 8156641 ECBD_3968 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine/uracil/vitamin C permease YP_003038138.1 4155235 R 866768 CDS YP_003038139.1 253775308 8156642 complement(4157130..4157594) 1 NC_012947.1 KEGG: sdy:SDY_4504 redox-sensing activator of SoxS; TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 4157594 8156642 ECBD_3969 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MerR family transcriptional regulator YP_003038139.1 4157130 R 866768 CDS YP_003038140.1 253775309 8156643 4157680..4158003 1 NC_012947.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4158003 8156643 ECBD_3970 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator SoxS YP_003038140.1 4157680 D 866768 CDS YP_003038141.1 253775310 8156644 complement(4158006..4159592) 1 NC_012947.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: sfv:SFV_4151 hypothetical protein; EAL domain protein 4159592 8156644 ECBD_3971 Escherichia coli 'BL21-Gold(DE3)pLysS AG' EAL domain protein YP_003038141.1 4158006 R 866768 CDS YP_003038142.1 253775311 8156645 4160022..4160303 1 NC_012947.1 KEGG: sbc:SbBS512_E4574 hypothetical protein; hypothetical protein 4160303 8156645 ECBD_3972 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038142.1 4160022 D 866768 CDS YP_003038143.1 253775312 8156646 complement(4160402..4160938) 1 NC_012947.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4160938 8156646 ECBD_3973 Escherichia coli 'BL21-Gold(DE3)pLysS AG' single-stranded DNA-binding protein YP_003038143.1 4160402 R 866768 CDS YP_003038144.1 253775313 8156647 4161193..4164015 1 NC_012947.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 4164015 uvrA 8156647 uvrA Escherichia coli 'BL21-Gold(DE3)pLysS AG' excinuclease ABC subunit A YP_003038144.1 4161193 D 866768 CDS YP_003038145.1 253775314 8156648 complement(4164050..4164406) 1 NC_012947.1 PFAM: protein of unknown function DUF419; KEGG: sdy:SDY_4510 hypothetical protein; hypothetical protein 4164406 8156648 ECBD_3975 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038145.1 4164050 R 866768 CDS YP_003038146.1 253775315 8156649 complement(4164410..4164826) 1 NC_012947.1 PFAM: protein of unknown function UPF0047; KEGG: sdy:SDY_4511 hypothetical protein; hypothetical protein 4164826 8156649 ECBD_3976 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038146.1 4164410 R 866768 CDS YP_003038147.1 253775316 8156650 complement(4164937..4165650) 1 NC_012947.1 class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4165650 aphA 8156650 aphA Escherichia coli 'BL21-Gold(DE3)pLysS AG' acid phosphatase/phosphotransferase YP_003038147.1 4164937 R 866768 CDS YP_003038148.1 253775317 8156651 4166052..4166255 1 NC_012947.1 KEGG: sfl:SF4150 hypothetical protein; hypothetical protein 4166255 8156651 ECBD_3978 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038148.1 4166052 D 866768 CDS YP_003038149.1 253775318 8156652 complement(4166757..4167950) 1 NC_012947.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4167950 8156652 ECBD_3979 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aromatic amino acid aminotransferase YP_003038149.1 4166757 R 866768 CDS YP_003038150.1 253775319 8156653 complement(4168203..4169282) 1 NC_012947.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4169282 alr 8156653 alr Escherichia coli 'BL21-Gold(DE3)pLysS AG' alanine racemase YP_003038150.1 4168203 R 866768 CDS YP_003038151.1 253775320 8156654 complement(4169335..4170750) 1 NC_012947.1 unwinds double stranded DNA; replicative DNA helicase 4170750 8156654 ECBD_3981 Escherichia coli 'BL21-Gold(DE3)pLysS AG' replicative DNA helicase YP_003038151.1 4169335 R 866768 CDS YP_003038152.1 253775321 8156655 4170833..4171816 1 NC_012947.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sdy:SDY_4523 quinone oxidoreductase, NADPH-dependent; quinone oxidoreductase, NADPH-dependent 4171816 8156655 ECBD_3982 Escherichia coli 'BL21-Gold(DE3)pLysS AG' quinone oxidoreductase, NADPH-dependent YP_003038152.1 4170833 D 866768 CDS YP_003038153.1 253775322 8156656 complement(4171982..4172224) 1 NC_012947.1 coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4172224 pspG 8156656 pspG Escherichia coli 'BL21-Gold(DE3)pLysS AG' phage shock protein G YP_003038153.1 4171982 R 866768 CDS YP_003038154.1 253775323 8156657 complement(4172358..4173395) 1 NC_012947.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase; KEGG: ssn:SSON_4229 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 4173395 8156657 ECBD_3984 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA-dihydrouridine synthase A YP_003038154.1 4172358 R 866768 CDS YP_003038155.1 253775324 8156658 complement(4173758..4174504) 1 NC_012947.1 KEGG: sfv:SFV_4165 hypothetical protein; hypothetical protein 4174504 8156658 ECBD_3985 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038155.1 4173758 R 866768 CDS YP_003038156.1 253775325 8156659 complement(4174495..4174779) 1 NC_012947.1 KEGG: sfl:SF4158 hypothetical protein; hypothetical protein 4174779 8156659 ECBD_3986 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038156.1 4174495 R 866768 CDS YP_003038157.1 253775326 8156660 4175098..4175613 1 NC_012947.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4175613 8156660 ECBD_3987 Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc uptake transcriptional repressor YP_003038157.1 4175098 D 866768 CDS YP_003038158.1 253775327 8156661 complement(4175655..4175864) 1 NC_012947.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4175864 8156661 ECBD_3988 Escherichia coli 'BL21-Gold(DE3)pLysS AG' stress-response protein YP_003038158.1 4175655 R 866768 CDS YP_003038159.1 253775328 8156662 complement(4175980..4177305) 1 NC_012947.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sfv:SFV_4169 DNA-damage-inducible SOS response protein; DNA-damage-inducible SOS response protein 4177305 8156662 ECBD_3989 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-damage-inducible SOS response protein YP_003038159.1 4175980 R 866768 CDS YP_003038160.1 253775329 8156663 complement(4177378..4177986) 1 NC_012947.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4177986 8156663 ECBD_3990 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LexA repressor YP_003038160.1 4177378 R 866768 CDS YP_003038161.1 253775330 8158488 complement(4178096..4178464) 1 NC_012947.1 PFAM: diacylglycerol kinase; KEGG: sdy:SDY_4532 diacylglycerol kinase; diacylglycerol kinase 4178464 8158488 ECBD_3991 Escherichia coli 'BL21-Gold(DE3)pLysS AG' diacylglycerol kinase YP_003038161.1 4178096 R 866768 CDS YP_003038162.1 253775331 8158489 4178635..4181058 1 NC_012947.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4181058 8158489 ECBD_3992 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol-3-phosphate acyltransferase YP_003038162.1 4178635 D 866768 CDS YP_003038163.1 253775332 8158490 complement(4181213..4182085) 1 NC_012947.1 catalyzes the conversion of 4-hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4182085 ubiA 8158490 ubiA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-hydroxybenzoate octaprenyltransferase YP_003038163.1 4181213 R 866768 CDS YP_003038164.1 253775333 8158491 complement(4182098..4182595) 1 NC_012947.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4182595 ubiC 8158491 ubiC Escherichia coli 'BL21-Gold(DE3)pLysS AG' chorismate pyruvate lyase YP_003038164.1 4182098 R 866768 CDS YP_003038165.1 253775334 8156499 complement(4182818..4184146) 1 NC_012947.1 in E. coli, some yjbl mutations have been reported as suppressors of dnaG mutations; hypothetical protein 4184146 8156499 ECBD_3995 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038165.1 4182818 R 866768 CDS YP_003038166.1 253775335 8156500 complement(4184204..4184398) 1 NC_012947.1 hypothetical protein 4184398 8156500 ECBD_3996 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038166.1 4184204 R 866768 CDS YP_003038167.1 253775336 8156501 4184500..4184652 1 NC_012947.1 hypothetical protein 4184652 8156501 ECBD_3997 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038167.1 4184500 D 866768 CDS YP_003038168.1 253775337 8156502 complement(4184627..4185547) 1 NC_012947.1 PFAM: maltose operon periplasmic; maltose regulon periplasmic protein 4185547 8156502 ECBD_3998 Escherichia coli 'BL21-Gold(DE3)pLysS AG' maltose regulon periplasmic protein YP_003038168.1 4184627 R 866768 CDS YP_003038169.1 253775338 8156503 complement(4185790..4187130) 1 NC_012947.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4187130 lamB 8156503 lamB Escherichia coli 'BL21-Gold(DE3)pLysS AG' maltoporin YP_003038169.1 4185790 R 866768 CDS YP_003038170.1 253775339 8156504 complement(4187202..4188317) 1 NC_012947.1 with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4188317 8156504 ECBD_4000 Escherichia coli 'BL21-Gold(DE3)pLysS AG' maltose/maltodextrin transporter ATP-binding protein YP_003038170.1 4187202 R 866768 CDS YP_003038171.1 253775340 8156505 4188494..4188589 1 NC_012947.1 hypothetical protein 4188589 8156505 ECBD_4001 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038171.1 4188494 D 866768 CDS YP_003038172.1 253775341 8156506 4188682..4189872 1 NC_012947.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 4189872 malE 8156506 malE Escherichia coli 'BL21-Gold(DE3)pLysS AG' maltose ABC transporter periplasmic protein YP_003038172.1 4188682 D 866768 CDS YP_003038173.1 253775342 8156507 4190026..4191570 1 NC_012947.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 4191570 malF 8156507 malF Escherichia coli 'BL21-Gold(DE3)pLysS AG' maltose transporter membrane protein YP_003038173.1 4190026 D 866768 CDS YP_003038174.1 253775343 8156508 4191585..4192475 1 NC_012947.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 4192475 malG 8156508 malG Escherichia coli 'BL21-Gold(DE3)pLysS AG' maltose transporter permease YP_003038174.1 4191585 D 866768 CDS YP_003038175.1 253775344 8156509 4192847..4194322 1 NC_012947.1 xylose/proton symporter; member of the major facilitator superfamily (MFS) of transporter; D-xylose transporter XylE 4194322 xylE 8156509 xylE Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-xylose transporter XylE YP_003038175.1 4192847 D 866768 CDS YP_003038176.1 253775345 8156510 complement(4194366..4194776) 1 NC_012947.1 PFAM: phosphate-starvation-inducible E; KEGG: sfx:S3556 phosphate-starvation-inducible protein PsiE; phosphate-starvation-inducible protein PsiE 4194776 8156510 ECBD_4006 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate-starvation-inducible protein PsiE YP_003038176.1 4194366 R 866768 CDS YP_003038177.1 253775346 8156511 4195046..4195324 1 NC_012947.1 KEGG: sbo:SBO_4058 hypothetical protein; hypothetical protein 4195324 8156511 ECBD_4007 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038177.1 4195046 D 866768 CDS YP_003038178.1 253775347 8156512 complement(4195371..4197467) 1 NC_012947.1 PFAM: protein of unknown function DUF940 membrane lipoprotein KEGG: sbc:SbBS512_E4534 lipoprotein; hypothetical protein 4197467 8156512 ECBD_4008 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038178.1 4195371 R 866768 CDS YP_003038179.1 253775348 8156513 complement(4197467..4198204) 1 NC_012947.1 PFAM: protein of unknown function DUF1017; KEGG: sbc:SbBS512_E4533 hypothetical protein; hypothetical protein 4198204 8156513 ECBD_4009 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038179.1 4197467 R 866768 CDS YP_003038180.1 253775349 8156514 complement(4198201..4198839) 1 NC_012947.1 KEGG: efe:EFER_4119 lipoprotein; lipoprotein 4198839 8156514 ECBD_4010 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipoprotein YP_003038180.1 4198201 R 866768 CDS YP_003038181.1 253775350 8156515 complement(4198954..4199196) 1 NC_012947.1 KEGG: elf:LF82_3422 uncharacterized protein YjbE; hypothetical protein 4199196 8156515 ECBD_4011 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038181.1 4198954 R 866768 CDS YP_003038182.1 253775351 8156516 complement(4199695..4201344) 1 NC_012947.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4201344 pgi 8156516 pgi Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucose-6-phosphate isomerase YP_003038182.1 4199695 R 866768 CDS YP_003038183.1 253775352 8156517 4201869..4203218 1 NC_012947.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 4203218 8156517 ECBD_4013 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aspartate kinase III YP_003038183.1 4201869 D 866768 CDS YP_003038184.1 253775353 8156518 4203471..4203743 1 NC_012947.1 KEGG: sdy:SDY_4309 hypothetical protein; hypothetical protein 4203743 8156518 ECBD_4014 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038184.1 4203471 D 866768 CDS YP_003038185.1 253775354 8156519 complement(4203876..4204748) 1 NC_012947.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4204748 8156519 ECBD_4015 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 23S rRNA pseudouridine synthase F YP_003038185.1 4203876 R 866768 CDS YP_003038186.1 253775355 8156520 4204960..4205649 1 NC_012947.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 4205649 8156520 ECBD_4016 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidase E YP_003038186.1 4204960 D 866768 CDS YP_003038187.1 253775356 8156521 complement(4205740..4207371) 1 NC_012947.1 TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: ssn:SSON_4191 alpha helix protein; sodium-dependent inorganic phosphate (Pi) transporter 4207371 8156521 ECBD_4017 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sodium-dependent inorganic phosphate (Pi) transporter YP_003038187.1 4205740 R 866768 CDS YP_003038188.1 253775357 8156522 complement(4207591..4211274) 1 NC_012947.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4211274 metH 8156522 metH Escherichia coli 'BL21-Gold(DE3)pLysS AG' B12-dependent methionine synthase YP_003038188.1 4207591 R 866768 CDS YP_003038189.1 253775358 8156523 4211474..4212298 1 NC_012947.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; transcriptional repressor IclR 4212298 8156523 ECBD_4019 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional repressor IclR YP_003038189.1 4211474 D 866768 CDS YP_003038190.1 253775359 8156525 complement(4214158..4215894) 1 NC_012947.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4215894 aceK 8156525 aceK Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_003038190.1 4214158 R 866768 CDS YP_003038191.1 253775360 8156526 complement(4216175..4217479) 1 NC_012947.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: sdy:SDY_4328 isocitrate lyase; isocitrate lyase 4217479 8156526 ECBD_4022 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isocitrate lyase YP_003038191.1 4216175 R 866768 CDS YP_003038192.1 253775361 8156527 complement(4217509..4219110) 1 NC_012947.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4219110 8156527 ECBD_4023 Escherichia coli 'BL21-Gold(DE3)pLysS AG' malate synthase YP_003038192.1 4217509 R 866768 CDS YP_003038193.1 253775362 8156528 complement(4219379..4220308) 1 NC_012947.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4220308 8156528 ECBD_4024 Escherichia coli 'BL21-Gold(DE3)pLysS AG' homoserine O-succinyltransferase YP_003038193.1 4219379 R 866768 CDS YP_003038194.1 253775363 8156529 4220465..4220908 1 NC_012947.1 PFAM: GCN5-related N-acetyltransferase; hypothetical protein 4220908 8156529 ECBD_4025 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038194.1 4220465 D 866768 CDS YP_003038195.1 253775364 8156534 4226916..4228505 1 NC_012947.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4228505 purH 8156534 purH Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_003038195.1 4226916 D 866768 CDS YP_003038196.1 253775365 8156535 4228517..4229806 1 NC_012947.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4229806 8156535 ECBD_4027 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoribosylamine--glycine ligase YP_003038196.1 4228517 D 866768 CDS YP_003038197.1 253775366 8156536 complement(4229803..4231128) 1 NC_012947.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4231128 8156536 ECBD_4028 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulatory protein ZraR YP_003038197.1 4229803 R 866768 CDS YP_003038198.1 253775367 8156537 complement(4231125..4232501) 1 NC_012947.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfx:S3660 sensor protein ZraS; sensor protein ZraS 4232501 8156537 ECBD_4029 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sensor protein ZraS YP_003038198.1 4231125 R 866768 CDS YP_003038199.1 253775368 8156538 4232739..4233158 1 NC_012947.1 KEGG: elf:LF82_3728 zinc resistance-associated protein; zinc resistance protein 4233158 zraP 8156538 zraP Escherichia coli 'BL21-Gold(DE3)pLysS AG' zinc resistance protein YP_003038199.1 4232739 D 866768 CDS YP_003038200.1 253775369 8156539 complement(4233160..4233855) 1 NC_012947.1 PFAM: protein of unknown function DUF1481; KEGG: sfx:S3662 hypothetical protein; hypothetical protein 4233855 8156539 ECBD_4031 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038200.1 4233160 R 866768 CDS YP_003038201.1 253775370 8156540 complement(4233868..4234140) 1 NC_012947.1 histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4234140 8156540 ECBD_4032 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator HU subunit alpha YP_003038201.1 4233868 R 866768 CDS YP_003038202.1 253775371 8156541 complement(4234327..4234917) 1 NC_012947.1 PFAM: protein of unknown function DUF416; KEGG: ssn:SSON_4172 hypothetical protein; hypothetical protein 4234917 8156541 ECBD_4033 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038202.1 4234327 R 866768 CDS YP_003038203.1 253775372 8156542 complement(4234960..4235631) 1 NC_012947.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4235631 8156542 ECBD_4034 Escherichia coli 'BL21-Gold(DE3)pLysS AG' endonuclease V YP_003038203.1 4234960 R 866768 CDS YP_003038204.1 253775373 8156543 complement(4235641..4236705) 1 NC_012947.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4236705 hemE 8156543 hemE Escherichia coli 'BL21-Gold(DE3)pLysS AG' uroporphyrinogen decarboxylase YP_003038204.1 4235641 R 866768 CDS YP_003038205.1 253775374 8156544 complement(4236745..4237518) 1 NC_012947.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4237518 nudC 8156544 nudC Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADH pyrophosphatase YP_003038205.1 4236745 R 866768 CDS YP_003038206.1 253775375 8156545 4237613..4238089 1 NC_012947.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4238089 8156545 ECBD_4037 Escherichia coli 'BL21-Gold(DE3)pLysS AG' anti-RNA polymerase sigma 70 factor YP_003038206.1 4237613 D 866768 CDS YP_003038207.1 253775376 8156546 4238323..4240218 1 NC_012947.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4240218 8156546 ECBD_4038 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine biosynthesis protein ThiC YP_003038207.1 4238323 D 866768 CDS YP_003038208.1 253775377 8156547 4240218..4240853 1 NC_012947.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4240853 8156547 ECBD_4039 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine-phosphate pyrophosphorylase YP_003038208.1 4240218 D 866768 CDS YP_003038209.1 253775378 8156548 4240846..4241601 1 NC_012947.1 TIGRFAM: thiazole biosynthesis adenylyltransferase ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sdy:SDY_3734 thiamin biosynthesis, thiazole moiety; thiazole biosynthesis adenylyltransferase ThiF 4241601 8156548 ECBD_4040 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiazole biosynthesis adenylyltransferase ThiF YP_003038209.1 4240846 D 866768 CDS YP_003038210.1 253775379 8156549 4241585..4241785 1 NC_012947.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 4241785 8156549 ECBD_4041 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfur carrier protein ThiS YP_003038210.1 4241585 D 866768 CDS YP_003038211.1 253775380 8156550 4241787..4242557 1 NC_012947.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4242557 thiG 8156550 thiG Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiazole synthase YP_003038211.1 4241787 D 866768 CDS YP_003038212.1 253775381 8156551 4242554..4243687 1 NC_012947.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 4243687 thiH 8156551 thiH Escherichia coli 'BL21-Gold(DE3)pLysS AG' thiamine biosynthesis protein ThiH YP_003038212.1 4242554 D 866768 CDS YP_003038213.1 253775382 8156552 complement(4244097..4244636) 1 NC_012947.1 KEGG: sbo:SBO_4009 heat shock protein; heat shock protein 4244636 8156552 ECBD_4044 Escherichia coli 'BL21-Gold(DE3)pLysS AG' heat shock protein YP_003038213.1 4244097 R 866768 CDS YP_003038214.1 253775383 8156553 complement(4244849..4249072) 1 NC_012947.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4249072 8156553 ECBD_4045 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-directed RNA polymerase subunit beta' YP_003038214.1 4244849 R 866768 CDS YP_003038215.1 253775384 8156554 complement(4249149..4253177) 1 NC_012947.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4253177 rpoB 8156554 rpoB Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-directed RNA polymerase subunit beta YP_003038215.1 4249149 R 866768 CDS YP_003038216.1 253775385 8156555 complement(4253497..4253862) 1 NC_012947.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4253862 rplL 8156555 rplL Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L7/L12 YP_003038216.1 4253497 R 866768 CDS YP_003038217.1 253775386 8156556 complement(4253929..4254426) 1 NC_012947.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4254426 rplJ 8156556 rplJ Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L10 YP_003038217.1 4253929 R 866768 CDS YP_003038218.1 253775387 8156557 complement(4254839..4255543) 1 NC_012947.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4255543 rplA 8156557 rplA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L1 YP_003038218.1 4254839 R 866768 CDS YP_003038219.1 253775388 8156558 complement(4255547..4255975) 1 NC_012947.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4255975 rplK 8156558 rplK Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L11 YP_003038219.1 4255547 R 866768 CDS YP_003038220.1 253775389 8156559 complement(4256134..4256679) 1 NC_012947.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4256679 nusG 8156559 nusG Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcription antitermination protein NusG YP_003038220.1 4256134 R 866768 CDS YP_003038221.1 253775390 8156560 complement(4256681..4257064) 1 NC_012947.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4257064 secE 8156560 secE Escherichia coli 'BL21-Gold(DE3)pLysS AG' preprotein translocase subunit SecE YP_003038221.1 4256681 R 866768 CDS YP_003038222.1 253775391 8156561 complement(4257294..4258478) 1 NC_012947.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4258478 8156561 ECBD_4053 Escherichia coli 'BL21-Gold(DE3)pLysS AG' elongation factor Tu YP_003038222.1 4257294 R 866768 CDS YP_003038223.1 253775392 8156566 4259396..4260346 1 NC_012947.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4260346 8156566 ECBD_4054 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pantothenate kinase YP_003038223.1 4259396 D 866768 CDS YP_003038224.1 253775393 8156567 complement(4260375..4261340) 1 NC_012947.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4261340 8156567 ECBD_4055 Escherichia coli 'BL21-Gold(DE3)pLysS AG' biotin--protein ligase YP_003038224.1 4260375 R 866768 CDS YP_003038225.1 253775394 8156568 complement(4261337..4262365) 1 NC_012947.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4262365 murB 8156568 murB Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylenolpyruvoylglucosamine reductase YP_003038225.1 4261337 R 866768 CDS YP_003038226.1 253775395 8156573 complement(4267886..4268743) 1 NC_012947.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4268743 8156573 ECBD_4057 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamate racemase YP_003038226.1 4267886 R 866768 CDS YP_003038227.1 253775396 8156574 4270901..4272001 1 NC_012947.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4272001 8156574 ECBD_4059 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA (uracil-5-)-methyltransferase YP_003038227.1 4270901 D 866768 CDS YP_003038228.1 253775397 8156575 complement(4272041..4272400) 1 NC_012947.1 PFAM: protein of unknown function DUF1422; KEGG: sbc:SbBS512_E4450 inner membrane protein; hypothetical protein 4272400 8156575 ECBD_4060 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038228.1 4272041 R 866768 CDS YP_003038229.1 253775398 8156576 complement(4272400..4273104) 1 NC_012947.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4273104 8156576 ECBD_4061 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional repressor FabR YP_003038229.1 4272400 R 866768 CDS YP_003038230.1 253775399 8156577 4273381..4274781 1 NC_012947.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4274781 8156577 ECBD_4062 Escherichia coli 'BL21-Gold(DE3)pLysS AG' soluble pyridine nucleotide transhydrogenase YP_003038230.1 4273381 D 866768 CDS YP_003038231.1 253775400 8156578 complement(4274764..4275681) 1 NC_012947.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4275681 8156578 ECBD_4063 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator OxyR YP_003038231.1 4274764 R 866768 CDS YP_003038232.1 253775401 8158492 complement(4275948..4277321) 1 NC_012947.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4277321 8158492 ECBD_4064 Escherichia coli 'BL21-Gold(DE3)pLysS AG' argininosuccinate lyase YP_003038232.1 4275948 R 866768 CDS YP_003038233.1 253775402 8158495 complement(4277382..4278158) 1 NC_012947.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4278158 8158495 ECBD_4065 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetylglutamate kinase YP_003038233.1 4277382 R 866768 CDS YP_003038234.1 253775403 8158496 complement(4278166..4279170) 1 NC_012947.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4279170 argC 8158496 argC Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acetyl-gamma-glutamyl-phosphate reductase YP_003038234.1 4278166 R 866768 CDS YP_003038235.1 253775404 8158497 4279324..4280475 1 NC_012947.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4280475 8158497 ECBD_4067 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetylornithine deacetylase YP_003038235.1 4279324 D 866768 CDS YP_003038236.1 253775405 8158498 4280827..4283478 1 NC_012947.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4283478 8158498 ECBD_4068 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoenolpyruvate carboxylase YP_003038236.1 4280827 D 866768 CDS YP_003038237.1 253775406 8158499 4283660..4285393 1 NC_012947.1 PFAM: sulfatase; KEGG: sbc:SbBS512_E4441 sulfatase; hypothetical protein 4285393 8158499 ECBD_4069 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038237.1 4283660 D 866768 CDS YP_003038238.1 253775407 8158500 4285608..4286459 1 NC_012947.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sfv:SFV_4023 AraC-type regulatory protein; AraC family transcriptional regulator 4286459 8158500 ECBD_4070 Escherichia coli 'BL21-Gold(DE3)pLysS AG' AraC family transcriptional regulator YP_003038238.1 4285608 D 866768 CDS YP_003038239.1 253775408 8158501 complement(4286446..4286787) 1 NC_012947.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; fructose-like phosphotransferase EIIB subunit 3 4286787 8158501 ECBD_4071 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-like phosphotransferase EIIB subunit 3 YP_003038239.1 4286446 R 866768 CDS YP_003038240.1 253775409 8158502 complement(4286789..4287667) 1 NC_012947.1 KEGG: ssn:SSON_4125 pyruvate formate lyase II activase; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: radical SAM protein; pyruvate formate lyase II activase 4287667 8158502 ECBD_4072 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pyruvate formate lyase II activase YP_003038240.1 4286789 R 866768 CDS YP_003038241.1 253775410 8158503 complement(4287633..4289930) 1 NC_012947.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; formate acetyltransferase 2 4289930 pflD 8158503 pflD Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate acetyltransferase 2 YP_003038241.1 4287633 R 866768 CDS YP_003038242.1 253775411 8158504 complement(4289981..4290301) 1 NC_012947.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; PTS system fructose-like transporter subunit EIIB 4290301 8158504 ECBD_4074 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system fructose-like transporter subunit EIIB YP_003038242.1 4289981 R 866768 CDS YP_003038243.1 253775412 8158505 complement(4290316..4291395) 1 NC_012947.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; fructose-like permease EIIC subunit 2 4291395 8158505 ECBD_4075 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-like permease EIIC subunit 2 YP_003038243.1 4290316 R 866768 CDS YP_003038244.1 253775413 8158506 4291704..4294205 1 NC_012947.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoryl transfer system HPr; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: elf:LF82_1767 multiphosphoryl transfer protein 2; phosphoenolpyruvate-protein phosphotransferase 4294205 8158506 ECBD_4076 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphoenolpyruvate-protein phosphotransferase YP_003038244.1 4291704 D 866768 CDS YP_003038245.1 253775414 8158507 4294217..4294879 1 NC_012947.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4294879 8158507 ECBD_4077 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-6-phosphate aldolase YP_003038245.1 4294217 D 866768 CDS YP_003038246.1 253775415 8158508 4294890..4295993 1 NC_012947.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4295993 gldA 8158508 gldA Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol dehydrogenase YP_003038246.1 4294890 D 866768 CDS YP_003038247.1 253775416 8158509 4296268..4296885 1 NC_012947.1 PFAM: protein of unknown function DUF1287; KEGG: sbc:SbBS512_E4431 hypothetical protein; hypothetical protein 4296885 8158509 ECBD_4079 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038247.1 4296268 D 866768 CDS YP_003038248.1 253775417 8158510 complement(4296912..4297817) 1 NC_012947.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: elf:LF82_3413 uncharacterized inner membrane transporter yiJE; hypothetical protein 4297817 8158510 ECBD_4080 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038248.1 4296912 R 866768 CDS YP_003038249.1 253775418 8158511 complement(4297910..4300090) 1 NC_012947.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: sfv:SFV_4012 catalase; hydroperoxidase HPI(I); catalase/peroxidase HPI 4300090 8158511 ECBD_4081 Escherichia coli 'BL21-Gold(DE3)pLysS AG' catalase/peroxidase HPI YP_003038249.1 4297910 R 866768 CDS YP_003038250.1 253775419 8158512 complement(4300419..4301309) 1 NC_012947.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4301309 metF 8158512 metF Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5,10-methylenetetrahydrofolate reductase YP_003038250.1 4300419 R 866768 CDS YP_003038251.1 253775420 8158513 complement(4301658..4304090) 1 NC_012947.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4304090 metL 8158513 metL Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional aspartate kinase II/homoserine dehydrogenase II YP_003038251.1 4301658 R 866768 CDS YP_003038252.1 253775421 8158514 complement(4304093..4305253) 1 NC_012947.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4305253 8158514 ECBD_4084 Escherichia coli 'BL21-Gold(DE3)pLysS AG' cystathionine gamma-synthase YP_003038252.1 4304093 R 866768 CDS YP_003038253.1 253775422 8158515 4305530..4305847 1 NC_012947.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4305847 8158515 ECBD_4085 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional repressor protein MetJ YP_003038253.1 4305530 D 866768 CDS YP_003038254.1 253775423 8158516 4306031..4306639 1 NC_012947.1 member of the NlpC/P60 superfamily of peptidases; peptidoglycan peptidase 4306639 8158516 ECBD_4086 Escherichia coli 'BL21-Gold(DE3)pLysS AG' peptidoglycan peptidase YP_003038254.1 4306031 D 866768 CDS YP_003038255.1 253775424 8158517 4306643..4307269 1 NC_012947.1 KEGG: efe:EFER_3835 conserved hypothetical protein; outer membrane lipoprotein; hypothetical protein 4307269 8158517 ECBD_4087 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038255.1 4306643 D 866768 CDS YP_003038256.1 253775425 8158518 complement(4307324..4307536) 1 NC_012947.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4307536 rpmE 8158518 rpmE Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L31 YP_003038256.1 4307324 R 866768 CDS YP_003038257.1 253775426 8158519 4307739..4309937 1 NC_012947.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4309937 8158519 ECBD_4089 Escherichia coli 'BL21-Gold(DE3)pLysS AG' primosome assembly protein PriA YP_003038257.1 4307739 D 866768 CDS YP_003038258.1 253775427 8158520 4310093..4311118 1 NC_012947.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 4311118 8158520 ECBD_4090 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator CytR YP_003038258.1 4310093 D 866768 CDS YP_003038259.1 253775428 8158521 4311210..4312169 1 NC_012947.1 TIGRFAM: cell division protein FtsN; PFAM: sporulation domain protein; KEGG: sfl:SF4011 essential cell division protein; essential cell division protein FtsN 4312169 8158521 ECBD_4091 Escherichia coli 'BL21-Gold(DE3)pLysS AG' essential cell division protein FtsN YP_003038259.1 4311210 D 866768 CDS YP_003038260.1 253775429 8158522 4312262..4312792 1 NC_012947.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4312792 8158522 ECBD_4092 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent protease peptidase subunit YP_003038260.1 4312262 D 866768 CDS YP_003038261.1 253775430 8158523 4312802..4314133 1 NC_012947.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4314133 hslU 8158523 hslU Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent protease ATP-binding subunit HslU YP_003038261.1 4312802 D 866768 CDS YP_003038262.1 253775431 8158524 4314200..4315126 1 NC_012947.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4315126 8158524 ECBD_4094 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_003038262.1 4314200 D 866768 CDS YP_003038263.1 253775432 8158525 4315219..4315704 1 NC_012947.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4315704 8158525 ECBD_4095 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease activity regulator protein RraA YP_003038263.1 4315219 D 866768 CDS YP_003038264.1 253775433 8158526 complement(4315789..4316028) 1 NC_012947.1 PFAM: protein of unknown function DUF904; KEGG: sfl:SF4006 hypothetical protein; hypothetical protein 4316028 8158526 ECBD_4096 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038264.1 4315789 R 866768 CDS YP_003038265.1 253775434 8158527 4316460..4317305 1 NC_012947.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: ssn:SSON_4096 facilitated diffusion of glycerol; MIP family channel protein 4317305 8158527 ECBD_4097 Escherichia coli 'BL21-Gold(DE3)pLysS AG' MIP family channel protein YP_003038265.1 4316460 D 866768 CDS YP_003038266.1 253775435 8158528 4317328..4318836 1 NC_012947.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4318836 glpK 8158528 glpK Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycerol kinase YP_003038266.1 4317328 D 866768 CDS YP_003038267.1 253775436 8158529 4318842..4319981 1 NC_012947.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 4319981 glpX 8158529 glpX Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose 1,6-bisphosphatase II YP_003038267.1 4318842 D 866768 CDS YP_003038268.1 253775437 8158530 4320078..4320824 1 NC_012947.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: sdy:SDY_3820 ferredoxin-NADP reductase; ferredoxin-NADP reductase 4320824 8158530 ECBD_4100 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferredoxin-NADP reductase YP_003038268.1 4320078 D 866768 CDS YP_003038269.1 253775438 8158531 complement(4320829..4321257) 1 NC_012947.1 with UspC and Usp E is involved in resistance to UV radiation; universal stress protein UspD 4321257 8158531 ECBD_4101 Escherichia coli 'BL21-Gold(DE3)pLysS AG' universal stress protein UspD YP_003038269.1 4320829 R 866768 CDS YP_003038270.1 253775439 8158532 complement(4321284..4321583) 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: sfx:S3747 hypothetical protein; hypothetical protein 4321583 8158532 ECBD_4102 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038270.1 4321284 R 866768 CDS YP_003038271.1 253775440 8158533 complement(4321795..4322235) 1 NC_012947.1 PFAM: protein of unknown function DUF805; KEGG: ssn:SSON_4090 hypothetical protein; hypothetical protein 4322235 8158533 ECBD_4103 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038271.1 4321795 R 866768 CDS YP_003038272.1 253775441 8158534 4322336..4322935 1 NC_012947.1 PFAM: protein of unknown function DUF1454; KEGG: sfv:SFV_3574 hypothetical protein; hypothetical protein 4322935 8158534 ECBD_4104 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038272.1 4322336 D 866768 CDS YP_003038273.1 253775442 8158535 4323043..4323810 1 NC_012947.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4323810 tpiA 8158535 tpiA Escherichia coli 'BL21-Gold(DE3)pLysS AG' triosephosphate isomerase YP_003038273.1 4323043 D 866768 CDS YP_003038274.1 253775443 8158536 complement(4323865..4324620) 1 NC_012947.1 KEGG: sfv:SFV_3576 CDP-diacylglycerol pyrophosphatase; TIGRFAM: CDP-diacylglycerol pyrophosphatase; PFAM: CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 4324620 8158536 ECBD_4106 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CDP-diacylglycerol pyrophosphatase YP_003038274.1 4323865 R 866768 CDS YP_003038275.1 253775444 8158537 complement(4324727..4325716) 1 NC_012947.1 TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfv:SFV_3577 sulfate transporter subunit; sulfate transporter subunit 4325716 8158537 ECBD_4107 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfate transporter subunit YP_003038275.1 4324727 R 866768 CDS YP_003038276.1 253775445 8158538 complement(4326036..4326998) 1 NC_012947.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4326998 8158538 ECBD_4108 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 6-phosphofructokinase YP_003038276.1 4326036 R 866768 CDS YP_003038277.1 253775446 8158539 complement(4327179..4328081) 1 NC_012947.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4328081 fieF 8158539 fieF Escherichia coli 'BL21-Gold(DE3)pLysS AG' ferrous iron efflux protein F YP_003038277.1 4327179 R 866768 CDS YP_003038278.1 253775447 8158540 complement(4328230..4328730) 1 NC_012947.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; periplasmic repressor CpxP 4328730 cpxP 8158540 cpxP Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic repressor CpxP YP_003038278.1 4328230 R 866768 CDS YP_003038279.1 253775448 8158541 4328880..4329578 1 NC_012947.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4329578 8158541 ECBD_4111 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator CpxR YP_003038279.1 4328880 D 866768 CDS YP_003038280.1 253775449 8158542 4329575..4330948 1 NC_012947.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4330948 cpxA 8158542 cpxA Escherichia coli 'BL21-Gold(DE3)pLysS AG' two-component sensor protein YP_003038280.1 4329575 D 866768 CDS YP_003038281.1 253775450 8158543 complement(4331054..4331728) 1 NC_012947.1 PFAM: MOSC domain containing protein; 3-alpha domain protein; KEGG: sbo:SBO_3928 hypothetical protein; hypothetical protein 4331728 8158543 ECBD_4113 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038281.1 4331054 R 866768 CDS YP_003038282.1 253775451 8158544 complement(4331877..4332860) 1 NC_012947.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 4332860 8158544 ECBD_4114 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-keto-3-deoxygluconate permease YP_003038282.1 4331877 R 866768 CDS YP_003038283.1 253775452 8158545 complement(4333120..4333740) 1 NC_012947.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4333740 8158545 ECBD_4115 Escherichia coli 'BL21-Gold(DE3)pLysS AG' superoxide dismutase YP_003038283.1 4333120 R 866768 CDS YP_003038284.1 253775453 8158546 4334025..4335059 1 NC_012947.1 transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter 4335059 8158546 ECBD_4116 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rhamnose-proton symporter YP_003038284.1 4334025 D 866768 CDS YP_003038285.1 253775454 8158547 complement(4335056..4335994) 1 NC_012947.1 activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4335994 8158547 ECBD_4117 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional activator RhaR YP_003038285.1 4335056 R 866768 CDS YP_003038286.1 253775455 8158548 complement(4335978..4336814) 1 NC_012947.1 activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4336814 8158548 ECBD_4118 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional activator RhaS YP_003038286.1 4335978 R 866768 CDS YP_003038287.1 253775456 8158549 complement(4336874..4337023) 1 NC_012947.1 KEGG: sbc:SbBS512_E4383 hypothetical protein; hypothetical protein 4337023 8158549 ECBD_4119 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038287.1 4336874 R 866768 CDS YP_003038288.1 253775457 8158550 4337102..4338571 1 NC_012947.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4338571 rhaB 8158550 rhaB Escherichia coli 'BL21-Gold(DE3)pLysS AG' rhamnulokinase YP_003038288.1 4337102 D 866768 CDS YP_003038289.1 253775458 8158551 4338568..4339827 1 NC_012947.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4339827 8158551 ECBD_4121 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-rhamnose isomerase YP_003038289.1 4338568 D 866768 CDS YP_003038290.1 253775459 8158552 4340002..4340826 1 NC_012947.1 TIGRFAM: rhamnulose-1-phosphate aldolase; KEGG: sdy:SDY_3844 rhamnulose-1-phosphate aldolase; rhamnulose-1-phosphate aldolase 4340826 8158552 ECBD_4122 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rhamnulose-1-phosphate aldolase YP_003038290.1 4340002 D 866768 CDS YP_003038291.1 253775460 8158553 4340836..4341150 1 NC_012947.1 TIGRFAM: L-rhamnose 1-epimerase; KEGG: sdy:SDY_3845 hypothetical protein; L-rhamnose 1-epimerase 4341150 8158553 ECBD_4123 Escherichia coli 'BL21-Gold(DE3)pLysS AG' L-rhamnose 1-epimerase YP_003038291.1 4340836 D 866768 CDS YP_003038292.1 253775461 8158554 complement(4341191..4342585) 1 NC_012947.1 KEGG: elf:LF82_p621 glycoporin; glycoporin 4342585 8158554 ECBD_4124 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoporin YP_003038292.1 4341191 R 866768 CDS YP_003038293.1 253775462 8158555 4343062..4343508 1 NC_012947.1 with FrvBRX is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system involved in the transport and phosphorylation of sugars; possibly responsible for the sugar specificity of the system; fructose-like phosphotransferase system subunit EIIA 4343508 8158555 ECBD_4125 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-like phosphotransferase system subunit EIIA YP_003038293.1 4343062 D 866768 CDS YP_003038294.1 253775463 8158556 4343519..4344970 1 NC_012947.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; KEGG: sbo:SBO_3915 PTS transporter components IIBC; PTS system transporter subunits IIBC 4344970 8158556 ECBD_4126 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system transporter subunits IIBC YP_003038294.1 4343519 D 866768 CDS YP_003038295.1 253775464 8158557 4344960..4346030 1 NC_012947.1 with FrvABR is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system which may be involved in the transport and phosphorylation of sugars; fructose-specific phosphotransferase system protein FrvX 4346030 8158557 ECBD_4127 Escherichia coli 'BL21-Gold(DE3)pLysS AG' fructose-specific phosphotransferase system protein FrvX YP_003038295.1 4344960 D 866768 CDS YP_003038296.1 253775465 8158558 4346030..4347778 1 NC_012947.1 repressor of the frv operon, involved in phosphoenolpyruvate:sugar phosphotransferase system; frv operon regulatory protein 4347778 8158558 ECBD_4128 Escherichia coli 'BL21-Gold(DE3)pLysS AG' frv operon regulatory protein YP_003038296.1 4346030 D 866768 CDS YP_003038297.1 253775466 8158559 complement(4347828..4348883) 1 NC_012947.1 hypothetical protein 4348883 8158559 ECBD_4129 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038297.1 4347828 R 866768 CDS YP_003038298.1 253775467 8158560 complement(4349036..4349869) 1 NC_012947.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4349869 8158560 ECBD_4130 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase accessory protein YP_003038298.1 4349036 R 866768 CDS YP_003038299.1 253775468 8158561 4350063..4353113 1 NC_012947.1 TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: ssn:SSON_4063 formate dehydrogenase-O, major subunit; formate dehydrogenase, subunit alpha 4353113 8158561 ECBD_4131 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase, subunit alpha YP_003038299.1 4350063 D 866768 CDS YP_003038300.1 253775469 8158562 4353126..4354028 1 NC_012947.1 TIGRFAM: formate dehydrogenase subunit beta; PFAM: formate dehydrogenase transmembrane domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_3602 formate dehydrogenase-O, iron-sulfur subunit; formate dehydrogenase subunit beta 4354028 8158562 ECBD_4132 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase subunit beta YP_003038300.1 4353126 D 866768 CDS YP_003038301.1 253775470 8158563 4354025..4354660 1 NC_012947.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 4354660 8158563 ECBD_4133 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase-O subunit gamma YP_003038301.1 4354025 D 866768 CDS YP_003038302.1 253775471 8158564 4354657..4355586 1 NC_012947.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4355586 8158564 ECBD_4134 Escherichia coli 'BL21-Gold(DE3)pLysS AG' formate dehydrogenase accessory protein FdhE YP_003038302.1 4354657 D 866768 CDS YP_003038303.1 253775472 8158565 complement(4355734..4355916) 1 NC_012947.1 KEGG: efe:EFER_2513 4'-phosphopantetheinyl transferase EntD; hypothetical protein 4355916 8158565 ECBD_4135 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038303.1 4355734 R 866768 CDS YP_003038304.1 253775473 8158566 complement(4355916..4356158) 1 NC_012947.1 KEGG: sbc:SbBS512_E4369 hypothetical protein; hypothetical protein 4356158 8158566 ECBD_4136 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038304.1 4355916 R 866768 CDS YP_003038305.1 253775474 8158567 complement(4356376..4356594) 1 NC_012947.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: sfv:SFV_3606 hypothetical protein; CopG family transcriptional regulator 4356594 8158567 ECBD_4137 Escherichia coli 'BL21-Gold(DE3)pLysS AG' CopG family transcriptional regulator YP_003038305.1 4356376 R 866768 CDS YP_003038306.1 253775475 8158568 complement(4356929..4357036) 1 NC_012947.1 hypothetical protein 4357036 8158568 ECBD_4138 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038306.1 4356929 R 866768 CDS YP_003038307.1 253775476 8158569 complement(4357447..4358388) 1 NC_012947.1 TIGRFAM: thioesterase domain protein; PFAM: GCN5-related N-acetyltransferase; KEGG: sbo:SBO_3902 acetyltransferase; thioesterase domain protein 4358388 8158569 ECBD_4139 Escherichia coli 'BL21-Gold(DE3)pLysS AG' thioesterase domain protein YP_003038307.1 4357447 R 866768 CDS YP_003038308.1 253775477 8158570 complement(4358433..4358870) 1 NC_012947.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4358870 8158570 ECBD_4140 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-tyrosyl-tRNA(Tyr) deacylase YP_003038308.1 4358433 R 866768 CDS YP_003038309.1 253775478 8158571 complement(4358867..4359739) 1 NC_012947.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4359739 rbn 8158571 rbn Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease BN YP_003038309.1 4358867 R 866768 CDS YP_003038310.1 253775479 8158572 complement(4359733..4360332) 1 NC_012947.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: ssn:SSON_4054 phosphatase; phosphatase 4360332 8158572 ECBD_4142 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphatase YP_003038310.1 4359733 R 866768 CDS YP_003038311.1 253775480 8158573 complement(4360431..4361216) 1 NC_012947.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 4361216 8158573 ECBD_4143 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DeoR family transcriptional regulator YP_003038311.1 4360431 R 866768 CDS YP_003038312.1 253775481 8158574 complement(4361250..4362146) 1 NC_012947.1 PFAM: PfkB domain protein; KEGG: sfx:S3791 kinase; PfkB domain protein 4362146 8158574 ECBD_4144 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PfkB domain protein YP_003038312.1 4361250 R 866768 CDS YP_003038313.1 253775482 8158575 4362314..4363210 1 NC_012947.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sfv:SFV_3617 dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 4363210 8158575 ECBD_4145 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-hydroxyisobutyrate dehydrogenase YP_003038313.1 4362314 D 866768 CDS YP_003038314.1 253775483 8157825 4363234..4364112 1 NC_012947.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sfx:S3793 aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 4364112 8157825 ECBD_4146 Escherichia coli 'BL21-Gold(DE3)pLysS AG' deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_003038314.1 4363234 D 866768 CDS YP_003038315.1 253775484 8157829 4364129..4365370 1 NC_012947.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: sfx:S3794 hypothetical protein; N-acylglucosamine 2-epimerase 4365370 8157829 ECBD_4147 Escherichia coli 'BL21-Gold(DE3)pLysS AG' N-acylglucosamine 2-epimerase YP_003038315.1 4364129 D 866768 CDS YP_003038316.1 253775485 8157830 4365484..4366410 1 NC_012947.1 KEGG: sfv:SFV_3620 aldose-1-epimerase; aldose-1-epimerase 4366410 8157830 ECBD_4148 Escherichia coli 'BL21-Gold(DE3)pLysS AG' aldose-1-epimerase YP_003038316.1 4365484 D 866768 CDS YP_003038317.1 253775486 8157831 4366535..4368538 1 NC_012947.1 KEGG: sfv:SFV_3621 alpha-glucosidase; alpha-glucosidase 4368538 8157831 ECBD_4149 Escherichia coli 'BL21-Gold(DE3)pLysS AG' alpha-glucosidase YP_003038317.1 4366535 D 866768 CDS YP_003038318.1 253775487 8157832 4368584..4369969 1 NC_012947.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: sfv:SFV_3622 permease; sugar (glycoside-Pentoside-Hexuronide) transporter 4369969 8157832 ECBD_4150 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar (glycoside-Pentoside-Hexuronide) transporter YP_003038318.1 4368584 D 866768 CDS YP_003038319.1 253775488 8157833 4370009..4371412 1 NC_012947.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; sugar (glycoside-Pentoside-Hexuronide) transporter 4371412 8157833 ECBD_4151 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar (glycoside-Pentoside-Hexuronide) transporter YP_003038319.1 4370009 D 866768 CDS YP_003038320.1 253775489 8157834 4371479..4372171 1 NC_012947.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L 4372171 ompL 8157834 ompL Escherichia coli 'BL21-Gold(DE3)pLysS AG' outer membrane porin L YP_003038320.1 4371479 D 866768 CDS YP_003038321.1 253775490 8157835 complement(4372262..4373527) 1 NC_012947.1 Sugar phosphate permease-like protein 4373527 8157835 ECBD_4153 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Sugar phosphate permease-like protein YP_003038321.1 4372262 R 866768 CDS YP_003038322.1 253775491 8157836 complement(4373629..4374609) 1 NC_012947.1 KEGG: sfx:S3803 hypothetical protein; hypothetical protein 4374609 8157836 ECBD_4154 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038322.1 4373629 R 866768 CDS YP_003038323.1 253775492 8157837 complement(4374617..4375327) 1 NC_012947.1 SMART: regulatory protein GntR HTH; KEGG: sfv:SFV_3628 transcriptional regulator; GntR family transcriptional regulator 4375327 8157837 ECBD_4155 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GntR family transcriptional regulator YP_003038323.1 4374617 R 866768 CDS YP_003038324.1 253775493 8157838 complement(4375544..4377367) 1 NC_012947.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; KEGG: sdy:SDY_3872 GTP-binding protein; GTP-binding protein 4377367 8157838 ECBD_4156 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GTP-binding protein YP_003038324.1 4375544 R 866768 CDS YP_003038325.1 253775494 8157839 4377740..4379149 1 NC_012947.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4379149 glnA 8157839 glnA Escherichia coli 'BL21-Gold(DE3)pLysS AG' glutamine synthetase YP_003038325.1 4377740 D 866768 CDS YP_003038326.1 253775495 8157840 4379435..4380484 1 NC_012947.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4380484 glnL 8157840 glnL Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrogen regulation protein NR(II) YP_003038326.1 4379435 D 866768 CDS YP_003038327.1 253775496 8157841 4380496..4381905 1 NC_012947.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4381905 glnG 8157841 glnG Escherichia coli 'BL21-Gold(DE3)pLysS AG' nitrogen regulation protein NR(I) YP_003038327.1 4380496 D 866768 CDS YP_003038328.1 253775497 8157842 4382017..4382127 1 NC_012947.1 KEGG: ses:SARI_03655 hypothetical protein; hypothetical protein 4382127 8157842 ECBD_4160 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038328.1 4382017 D 866768 CDS YP_003038329.1 253775498 8157843 complement(4382317..4383690) 1 NC_012947.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4383690 8157843 ECBD_4161 Escherichia coli 'BL21-Gold(DE3)pLysS AG' coproporphyrinogen III oxidase YP_003038329.1 4382317 R 866768 CDS YP_003038330.1 253775499 8157844 complement(4383879..4384388) 1 NC_012947.1 PFAM: protein of unknown function DUF414; KEGG: sfl:SF3936 hypothetical protein; hypothetical protein 4384388 8157844 ECBD_4162 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038330.1 4383879 R 866768 CDS YP_003038331.1 253775500 8157845 4384970..4385602 1 NC_012947.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4385602 engB 8157845 engB Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribosome biogenesis GTP-binding protein YsxC YP_003038331.1 4384970 D 866768 CDS YP_003038332.1 253775501 8157846 4385616..4385765 1 NC_012947.1 KEGG: sbc:SbBS512_E4338 hypothetical protein; hypothetical protein 4385765 8157846 ECBD_4164 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038332.1 4385616 D 866768 CDS YP_003038333.1 253775502 8157847 complement(4385983..4388769) 1 NC_012947.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4388769 8157847 ECBD_4165 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA polymerase I YP_003038333.1 4385983 R 866768 CDS YP_003038334.1 253775503 8157848 4389133..4390065 1 NC_012947.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: ssn:SSON_4035 endonuclease; acyltransferase 4390065 8157848 ECBD_4166 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acyltransferase YP_003038334.1 4389133 D 866768 CDS YP_003038335.1 253775504 8157849 complement(4390106..4391536) 1 NC_012947.1 PFAM: protein of unknown function DUF945; KEGG: sfx:S3815 hypothetical protein; hypothetical protein 4391536 8157849 ECBD_4167 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038335.1 4390106 R 866768 CDS YP_003038336.1 253775505 8157850 complement(4391526..4391666) 1 NC_012947.1 KEGG: sbc:SbBS512_E4333 hypothetical protein; hypothetical protein 4391666 8157850 ECBD_4168 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038336.1 4391526 R 866768 CDS YP_003038337.1 253775506 8157852 complement(4391870..4393078) 1 NC_012947.1 PFAM: transposase IS4 family protein; KEGG: sea:SeAg_B3181 IS10 transposase; transposase IS4 family protein 4393078 8157852 ECBD_4170 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transposase IS4 family protein YP_003038337.1 4391870 R 866768 CDS YP_003038338.1 253775507 8157853 complement(4393672..4394658) 1 NC_012947.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4394658 8157853 ECBD_4171 Escherichia coli 'BL21-Gold(DE3)pLysS AG' serine/threonine protein kinase YP_003038338.1 4393672 R 866768 CDS YP_003038339.1 253775508 8157854 complement(4394735..4395004) 1 NC_012947.1 PFAM: protein of unknown function DUF1040; KEGG: sdy:SDY_3887 hypothetical protein; hypothetical protein 4395004 8157854 ECBD_4172 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038339.1 4394735 R 866768 CDS YP_003038340.1 253775509 8157855 4395074..4395658 1 NC_012947.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4395658 mobA 8157855 mobA Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_003038340.1 4395074 D 866768 CDS YP_003038341.1 253775510 8157856 4395640..4396167 1 NC_012947.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B 4396167 8157856 ECBD_4174 Escherichia coli 'BL21-Gold(DE3)pLysS AG' molybdopterin-guanine dinucleotide biosynthesis protein B YP_003038341.1 4395640 D 866768 CDS YP_003038342.1 253775511 8157862 complement(4401844..4402389) 1 NC_012947.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4402389 hemG 8157862 hemG Escherichia coli 'BL21-Gold(DE3)pLysS AG' protoporphyrinogen oxidase YP_003038342.1 4401844 R 866768 CDS YP_003038343.1 253775512 8157863 complement(4402401..4403852) 1 NC_012947.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: sdy:SDY_3896 potassium transporter; potassium transporter 4403852 8157863 ECBD_4176 Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium transporter YP_003038343.1 4402401 R 866768 CDS YP_003038344.1 253775513 8157864 complement(4403891..4404505) 1 NC_012947.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: ssn:SSON_4021 hypothetical protein; hypothetical protein 4404505 8157864 ECBD_4177 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038344.1 4403891 R 866768 CDS YP_003038345.1 253775514 8157865 complement(4404505..4405836) 1 NC_012947.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4405836 8157865 ECBD_4178 Escherichia coli 'BL21-Gold(DE3)pLysS AG' proline dipeptidase YP_003038345.1 4404505 R 866768 CDS YP_003038346.1 253775515 8157866 4406026..4408215 1 NC_012947.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4408215 fadB 8157866 fadB Escherichia coli 'BL21-Gold(DE3)pLysS AG' multifunctional fatty acid oxidation complex subunit alpha YP_003038346.1 4406026 D 866768 CDS YP_003038347.1 253775516 8157867 4408225..4409388 1 NC_012947.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4409388 fadA 8157867 fadA Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-ketoacyl-CoA thiolase YP_003038347.1 4408225 D 866768 CDS YP_003038348.1 253775517 8157868 complement(4409671..4410372) 1 NC_012947.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4410372 fre 8157868 fre Escherichia coli 'BL21-Gold(DE3)pLysS AG' FMN reductase YP_003038348.1 4409671 R 866768 CDS YP_003038349.1 253775518 8157869 complement(4410418..4411911) 1 NC_012947.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate decarboxylase 4411911 8157869 ECBD_4182 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3-octaprenyl-4-hydroxybenzoate decarboxylase YP_003038349.1 4410418 R 866768 CDS YP_003038350.1 253775519 8157870 4412078..4412566 1 NC_012947.1 KEGG: sdy:SDY_3903 transcriptional activator RfaH; TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; SMART: NGN domain protein; transcriptional activator RfaH 4412566 rfaH 8157870 rfaH Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional activator RfaH YP_003038350.1 4412078 D 866768 CDS YP_003038351.1 253775520 8157871 complement(4412563..4413345) 1 NC_012947.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4413345 8157871 ECBD_4184 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNase TatD YP_003038351.1 4412563 R 866768 CDS YP_003038352.1 253775521 8157872 complement(4413387..4414163) 1 NC_012947.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4414163 8157872 ECBD_4185 Escherichia coli 'BL21-Gold(DE3)pLysS AG' twin-arginine protein translocation system subunit TatC YP_003038352.1 4413387 R 866768 CDS YP_003038353.1 253775522 8157873 complement(4414166..4414681) 1 NC_012947.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4414681 8157873 ECBD_4186 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sec-independent translocase YP_003038353.1 4414166 R 866768 CDS YP_003038354.1 253775523 8157874 complement(4414685..4414954) 1 NC_012947.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4414954 tatA 8157874 tatA Escherichia coli 'BL21-Gold(DE3)pLysS AG' twin arginine translocase protein A YP_003038354.1 4414685 R 866768 CDS YP_003038355.1 253775524 8157875 complement(4415033..4416673) 1 NC_012947.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4416673 ubiB 8157875 ubiB Escherichia coli 'BL21-Gold(DE3)pLysS AG' ubiquinone biosynthesis protein UbiB YP_003038355.1 4415033 R 866768 CDS YP_003038356.1 253775525 8157876 complement(4416670..4417275) 1 NC_012947.1 PFAM: sterol-binding domain protein; KEGG: sbc:SbBS512_E4306 hypothetical protein; sterol-binding domain protein 4417275 8157876 ECBD_4189 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sterol-binding domain protein YP_003038356.1 4416670 R 866768 CDS YP_003038357.1 253775526 8157877 complement(4417289..4418044) 1 NC_012947.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4418044 ubiE 8157877 ubiE Escherichia coli 'BL21-Gold(DE3)pLysS AG' ubiquinone/menaquinone biosynthesis methyltransferase YP_003038357.1 4417289 R 866768 CDS YP_003038358.1 253775527 8157878 complement(4418139..4419566) 1 NC_012947.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4419566 8157878 ECBD_4191 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA recombination protein RmuC YP_003038358.1 4418139 R 866768 CDS YP_003038359.1 253775528 8157879 4419783..4420550 1 NC_012947.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: elf:LF82_p601 transcriptional regulator; transcriptional regulator, IclR family 4420550 8157879 ECBD_4192 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator, IclR family YP_003038359.1 4419783 D 866768 CDS YP_003038360.1 253775529 8157880 4420574..4421578 1 NC_012947.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: elf:LF82_p600 hypothetical protein; 2-dehydro-3-deoxygalactonokinase 4421578 8157880 ECBD_4193 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-dehydro-3-deoxygalactonokinase YP_003038360.1 4420574 D 866768 CDS YP_003038361.1 253775530 8157881 4421568..4422197 1 NC_012947.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 4422197 8157881 ECBD_4194 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_003038361.1 4421568 D 866768 CDS YP_003038362.1 253775531 8157882 4422222..4423196 1 NC_012947.1 PFAM: conserved hypothetical protein; KEGG: elf:LF82_p598 hypothetical protein; hypothetical protein 4423196 8157882 ECBD_4195 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038362.1 4422222 D 866768 CDS YP_003038363.1 253775532 8157883 4423213..4423719 1 NC_012947.1 KEGG: elf:LF82_p597 hypothetical protein; hypothetical protein 4423719 8157883 ECBD_4196 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038363.1 4423213 D 866768 CDS YP_003038364.1 253775533 8157884 4423732..4425222 1 NC_012947.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: elf:LF82_p596 hypothetical protein; hypothetical protein 4425222 8157884 ECBD_4197 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038364.1 4423732 D 866768 CDS YP_003038365.1 253775534 8157885 complement(4425256..4426020) 1 NC_012947.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4426020 8157885 ECBD_4198 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uridine phosphorylase YP_003038365.1 4425256 R 866768 CDS YP_003038366.1 253775535 8157886 4426282..4427091 1 NC_012947.1 PFAM: dienelactone hydrolase; KEGG: elf:LF82_3701 carboxymethylenebutenolidase; carboxymethylenebutenolidase 4427091 8157886 ECBD_4199 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxymethylenebutenolidase YP_003038366.1 4426282 D 866768 CDS YP_003038367.1 253775536 8157887 complement(4427122..4427217) 1 NC_012947.1 hypothetical protein 4427217 8157887 ECBD_4200 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038367.1 4427122 R 866768 CDS YP_003038368.1 253775537 8157888 4427348..4428016 1 NC_012947.1 PFAM: isochorismatase hydrolase; KEGG: elf:LF82_p595 hypothetical protein, hypothetica l p rotein; isochorismatase hydrolase 4428016 8157888 ECBD_4201 Escherichia coli 'BL21-Gold(DE3)pLysS AG' isochorismatase hydrolase YP_003038368.1 4427348 D 866768 CDS YP_003038369.1 253775538 8157889 4428022..4428882 1 NC_012947.1 KEGG: elf:LF82_p594 hypothetical protein; hypothetical protein 4428882 8157889 ECBD_4202 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038369.1 4428022 D 866768 CDS YP_003038370.1 253775539 8157890 4428977..4430536 1 NC_012947.1 PFAM: FdrA family protein; KEGG: elf:LF82_p593 hypothetical protein; FdrA family protein 4430536 8157890 ECBD_4203 Escherichia coli 'BL21-Gold(DE3)pLysS AG' FdrA family protein YP_003038370.1 4428977 D 866768 CDS YP_003038371.1 253775540 8157891 4430533..4431957 1 NC_012947.1 PFAM: protein of unknown function DUF1116; KEGG: elf:LF82_p592 hypothetical protein; hypothetical protein 4431957 8157891 ECBD_4204 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038371.1 4430533 D 866768 CDS YP_003038372.1 253775541 8157892 4431950..4432906 1 NC_012947.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4432906 8157892 ECBD_4205 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carbamate kinase YP_003038372.1 4431950 D 866768 CDS YP_003038373.1 253775542 8157893 4432923..4433312 1 NC_012947.1 KEGG: elf:LF82_p590 hypothetical protein, hypothetical protein; hypothetical protein 4433312 8157893 ECBD_4206 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038373.1 4432923 D 866768 CDS YP_003038374.1 253775543 8157894 4433338..4434561 1 NC_012947.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: elf:LF82_p589 permease; permease for cytosine/purines uracil thiamine allantoin 4434561 8157894 ECBD_4207 Escherichia coli 'BL21-Gold(DE3)pLysS AG' permease for cytosine/purines uracil thiamine allantoin YP_003038374.1 4433338 D 866768 CDS YP_003038375.1 253775544 8157895 4434639..4435535 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: elf:LF82_p588 hypothetical protein; LysR family transcriptional regulator 4435535 8157895 ECBD_4208 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003038375.1 4434639 D 866768 CDS YP_003038376.1 253775545 8157896 complement(4435629..4437890) 1 NC_012947.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 4437890 8157896 ECBD_4209 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase YP_003038376.1 4435629 R 866768 CDS YP_003038377.1 253775546 8157897 4438127..4439080 1 NC_012947.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_4002 regulator for MetE and MetH; LysR family transcriptional regulator 4439080 8157897 ECBD_4210 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LysR family transcriptional regulator YP_003038377.1 4438127 D 866768 CDS YP_003038378.1 253775547 8157898 complement(4438968..4439867) 1 NC_012947.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: ssn:SSON_4001 hypothetical protein; carboxylate/amino acid/amine transporter 4439867 8157898 ECBD_4211 Escherichia coli 'BL21-Gold(DE3)pLysS AG' carboxylate/amino acid/amine transporter YP_003038378.1 4438968 R 866768 CDS YP_003038379.1 253775548 8157899 complement(4439943..4440743) 1 NC_012947.1 purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; sugar phosphatase 4440743 8157899 ECBD_4212 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sugar phosphatase YP_003038379.1 4439943 R 866768 CDS YP_003038380.1 253775549 8157900 complement(4440751..4441773) 1 NC_012947.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4441773 8157900 ECBD_4213 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lysophospholipase L2 YP_003038380.1 4440751 R 866768 CDS YP_003038381.1 253775550 8157901 4441884..4442504 1 NC_012947.1 TIGRFAM: homoserine/threonine efflux pump; PFAM: lysine exporter protein (LYSE/YGGA); KEGG: sbc:SbBS512_E4291 homoserine/homoserine lactone efflux protein; homoserine/homoserine lactone efflux protein 4442504 rhtB 8157901 rhtB Escherichia coli 'BL21-Gold(DE3)pLysS AG' homoserine/homoserine lactone efflux protein YP_003038381.1 4441884 D 866768 CDS YP_003038382.1 253775551 8157902 complement(4442566..4443186) 1 NC_012947.1 TIGRFAM: homoserine/threonine efflux pump; PFAM: lysine exporter protein (LYSE/YGGA); KEGG: sfv:SFV_3675 threonine efflux system; threonine efflux system 4443186 8157902 ECBD_4215 Escherichia coli 'BL21-Gold(DE3)pLysS AG' threonine efflux system YP_003038382.1 4442566 R 866768 CDS YP_003038383.1 253775552 8157903 complement(4443250..4445085) 1 NC_012947.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4445085 8157903 ECBD_4216 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent DNA helicase RecQ YP_003038383.1 4443250 R 866768 CDS YP_003038384.1 253775553 8157904 complement(4445204..4446073) 1 NC_012947.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4446073 8157904 ECBD_4217 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phospholipase A YP_003038384.1 4445204 R 866768 CDS YP_003038385.1 253775554 8157905 4446238..4446705 1 NC_012947.1 PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E4287 thioesterase family protein; hypothetical protein 4446705 8157905 ECBD_4218 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038385.1 4446238 D 866768 CDS YP_003038386.1 253775555 8157906 4446757..4447647 1 NC_012947.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfv:SFV_3679 hypothetical protein; RarD protein, DMT superfamily transporter 4447647 8157906 ECBD_4219 Escherichia coli 'BL21-Gold(DE3)pLysS AG' RarD protein, DMT superfamily transporter YP_003038386.1 4446757 D 866768 CDS YP_003038387.1 253775556 8157907 4448136..4448516 1 NC_012947.1 KEGG: sfv:SFV_3681 hypothetical protein; hypothetical protein 4448516 8157907 ECBD_4220 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038387.1 4448136 D 866768 CDS YP_003038388.1 253775557 8157909 4448886..4449734 1 NC_012947.1 KEGG: elf:LF82_p579 hypothetical protein; hypothetical protein 4449734 8157909 ECBD_4222 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038388.1 4448886 D 866768 CDS YP_003038389.1 253775558 8158580 4449731..4450222 1 NC_012947.1 PFAM: protein of unknown function DUF943; KEGG: elf:LF82_p578 hypothetical protein; hypothetical protein 4450222 8158580 ECBD_4223 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038389.1 4449731 D 866768 CDS YP_003038390.1 253775559 8157989 complement(4450264..4451214) 1 NC_012947.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4451214 8157989 ECBD_4224 Escherichia coli 'BL21-Gold(DE3)pLysS AG' magnesium/nickel/cobalt transporter CorA YP_003038390.1 4450264 R 866768 CDS YP_003038391.1 253775560 8157990 complement(4451458..4451571) 1 NC_012947.1 KEGG: sbc:SbBS512_E4280 hypothetical protein; hypothetical protein 4451571 8157990 ECBD_4225 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038391.1 4451458 R 866768 CDS YP_003038392.1 253775561 8157991 4451584..4452348 1 NC_012947.1 KEGG: sdy:SDY_3930 predicted periplasmic protein; periplasmic protein 4452348 8157991 ECBD_4226 Escherichia coli 'BL21-Gold(DE3)pLysS AG' periplasmic protein YP_003038392.1 4451584 D 866768 CDS YP_003038393.1 253775562 8157992 4452431..4453333 1 NC_012947.1 PFAM: protein of unknown function DUF62; KEGG: sdy:SDY_3931 hypothetical protein; hypothetical protein 4453333 8157992 ECBD_4227 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038393.1 4452431 D 866768 CDS YP_003038394.1 253775563 8157993 complement(4453388..4455550) 1 NC_012947.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4455550 uvrD 8157993 uvrD Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-dependent helicase II YP_003038394.1 4453388 R 866768 CDS YP_003038395.1 253775564 8157994 complement(4455634..4456350) 1 NC_012947.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4456350 8157994 ECBD_4229 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flavin mononucleotide phosphatase YP_003038395.1 4455634 R 866768 CDS YP_003038396.1 253775565 8157995 complement(4456350..4457246) 1 NC_012947.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4457246 xerC 8157995 xerC Escherichia coli 'BL21-Gold(DE3)pLysS AG' site-specific tyrosine recombinase XerC YP_003038396.1 4456350 R 866768 CDS YP_003038397.1 253775566 8157996 complement(4457243..4457950) 1 NC_012947.1 PFAM: protein of unknown function DUF484; KEGG: sfv:SFV_3689 hypothetical protein; hypothetical protein 4457950 8157996 ECBD_4231 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038397.1 4457243 R 866768 CDS YP_003038398.1 253775567 8157997 complement(4457947..4458771) 1 NC_012947.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4458771 dapF 8157997 dapF Escherichia coli 'BL21-Gold(DE3)pLysS AG' diaminopimelate epimerase YP_003038398.1 4457947 R 866768 CDS YP_003038399.1 253775568 8157998 complement(4458808..4459011) 1 NC_012947.1 KEGG: ssn:SSON_3981 hypothetical protein; hypothetical protein 4459011 8157998 ECBD_4233 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038399.1 4458808 R 866768 CDS YP_003038400.1 253775569 8157999 4459200..4459433 1 NC_012947.1 KEGG: efe:EFER_3695 conserved hypothetical protein; exported protein; hypothetical protein 4459433 8157999 ECBD_4234 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038400.1 4459200 D 866768 CDS YP_003038401.1 253775570 8158000 4459481..4459801 1 NC_012947.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4459801 cyaY 8158000 cyaY Escherichia coli 'BL21-Gold(DE3)pLysS AG' frataxin-like protein YP_003038401.1 4459481 D 866768 CDS YP_003038402.1 253775571 8158001 complement(4459841..4462387) 1 NC_012947.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4462387 cyaA 8158001 cyaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' adenylate cyclase YP_003038402.1 4459841 R 866768 CDS YP_003038403.1 253775572 8158002 4462753..4463715 1 NC_012947.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4463715 hemC 8158002 hemC Escherichia coli 'BL21-Gold(DE3)pLysS AG' porphobilinogen deaminase YP_003038403.1 4462753 D 866768 CDS YP_003038404.1 253775573 8158003 4463712..4464452 1 NC_012947.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4464452 hemD 8158003 hemD Escherichia coli 'BL21-Gold(DE3)pLysS AG' uroporphyrinogen-III synthase YP_003038404.1 4463712 D 866768 CDS YP_003038405.1 253775574 8158004 4464474..4465679 1 NC_012947.1 PFAM: protein of unknown function DUF513 hemX; KEGG: ssn:SSON_3975 uroporphyrinogen III C-methyltransferase; uroporphyrinogen III C-methyltransferase 4465679 8158004 ECBD_4239 Escherichia coli 'BL21-Gold(DE3)pLysS AG' uroporphyrinogen III C-methyltransferase YP_003038405.1 4464474 D 866768 CDS YP_003038406.1 253775575 8158005 4465682..4466878 1 NC_012947.1 TIGRFAM: HemY protein; PFAM: HemY domain protein; hypothetical protein; KEGG: sbc:SbBS512_E4261 HemY protein; protoheme IX biogenesis protein 4466878 8158005 ECBD_4240 Escherichia coli 'BL21-Gold(DE3)pLysS AG' protoheme IX biogenesis protein YP_003038406.1 4465682 D 866768 CDS YP_003038407.1 253775576 8158006 4467564..4469219 1 NC_012947.1 PFAM: sulfatase; KEGG: elf:LF82_0162 arylsulfatase; sulfatase 4469219 8158006 ECBD_4241 Escherichia coli 'BL21-Gold(DE3)pLysS AG' sulfatase YP_003038407.1 4467564 D 866768 CDS YP_003038408.1 253775577 8158007 complement(4469377..4470612) 1 NC_012947.1 PFAM: radical SAM protein; KEGG: elf:LF82_0163 arylsulfatase-activating protein AslB; radical SAM protein 4470612 8158007 ECBD_4242 Escherichia coli 'BL21-Gold(DE3)pLysS AG' radical SAM protein YP_003038408.1 4469377 R 866768 CDS YP_003038409.1 253775578 8158012 complement(4471298..4472683) 1 NC_012947.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter YifK 4472683 8158012 ECBD_4243 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transporter YifK YP_003038409.1 4471298 R 866768 CDS YP_003038410.1 253775579 8158013 complement(4472874..4473614) 1 NC_012947.1 KEGG: sfv:SFV_3709 UDP-N-acetyl-D-mannosaminuronic acid transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; UDP-N-acetyl-D-mannosaminuronic acid transferase 4473614 8158013 ECBD_4244 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetyl-D-mannosaminuronic acid transferase YP_003038410.1 4472874 R 866768 CDS YP_003038411.1 253775580 8158014 complement(4473617..4474969) 1 NC_012947.1 enterobacterial common antigen polymerase; common antigen polymerase 4474969 8158014 ECBD_4245 Escherichia coli 'BL21-Gold(DE3)pLysS AG' common antigen polymerase YP_003038411.1 4473617 R 866768 CDS YP_003038412.1 253775581 8158015 complement(4474966..4476045) 1 NC_012947.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4476045 8158015 ECBD_4246 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4-alpha-L-fucosyltransferase YP_003038412.1 4474966 R 866768 CDS YP_003038413.1 253775582 8158016 complement(4476042..4477292) 1 NC_012947.1 PFAM: polysaccharide biosynthesis protein; KEGG: sbc:SbBS512_E4129 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 4477292 8158016 ECBD_4247 Escherichia coli 'BL21-Gold(DE3)pLysS AG' polysaccharide biosynthesis protein YP_003038413.1 4476042 R 866768 CDS YP_003038414.1 253775583 8158017 complement(4477294..4478424) 1 NC_012947.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4478424 8158017 ECBD_4248 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TDP-4-oxo-6-deoxy-D-glucose transaminase YP_003038414.1 4477294 R 866768 CDS YP_003038415.1 253775584 8158018 complement(4478429..4479103) 1 NC_012947.1 TIGRFAM: TDP-D-fucosamine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: elf:LF82_1857 lipopolysaccharide biosynthesis protein RffC; TDP-fucosamine acetyltransferase 4479103 8158018 ECBD_4249 Escherichia coli 'BL21-Gold(DE3)pLysS AG' TDP-fucosamine acetyltransferase YP_003038415.1 4478429 R 866768 CDS YP_003038416.1 253775585 8158019 complement(4479081..4479962) 1 NC_012947.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: sfv:SFV_3715 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 4479962 8158019 ECBD_4250 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucose-1-phosphate thymidylyltransferase YP_003038416.1 4479081 R 866768 CDS YP_003038417.1 253775586 8158020 complement(4479981..4481048) 1 NC_012947.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: ssn:SSON_3960 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4481048 8158020 ECBD_4251 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dTDP-glucose 4,6-dehydratase YP_003038417.1 4479981 R 866768 CDS YP_003038418.1 253775587 8158021 complement(4481048..4482310) 1 NC_012947.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4482310 wecC 8158021 wecC Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetyl-D-mannosamine dehydrogenase YP_003038418.1 4481048 R 866768 CDS YP_003038419.1 253775588 8158022 complement(4482307..4483437) 1 NC_012947.1 KEGG: elf:LF82_1859 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 4483437 8158022 ECBD_4253 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-N-acetylglucosamine 2-epimerase YP_003038419.1 4482307 R 866768 CDS YP_003038420.1 253775589 8158023 complement(4483493..4484539) 1 NC_012947.1 Enterobacterial Common antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4484539 8158023 ECBD_4254 Escherichia coli 'BL21-Gold(DE3)pLysS AG' lipopolysaccharide biosynthesis protein WzzE YP_003038420.1 4483493 R 866768 CDS YP_003038421.1 253775590 8158024 complement(4484551..4485654) 1 NC_012947.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase family 4; KEGG: sbc:SbBS512_E4137 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4485654 8158024 ECBD_4255 Escherichia coli 'BL21-Gold(DE3)pLysS AG' UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_003038421.1 4484551 R 866768 CDS YP_003038422.1 253775591 8158025 complement(4485666..4485884) 1 NC_012947.1 KEGG: sbo:SBO_3794 hypothetical protein; hypothetical protein 4485884 8158025 ECBD_4256 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038422.1 4485666 R 866768 CDS YP_003038423.1 253775592 8158026 complement(4485894..4487153) 1 NC_012947.1 KEGG: sdy:SDY_3966 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; ribonuclease B OB region domain; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; ATPase AAA; transcription termination factor Rho 4487153 8158026 ECBD_4257 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcription termination factor Rho YP_003038423.1 4485894 R 866768 CDS YP_003038424.1 253775593 8158027 complement(4487238..4487339) 1 NC_012947.1 KEGG: sfx:S3904 Rho operon leader peptide; rho operon leader peptide 4487339 8158027 ECBD_4258 Escherichia coli 'BL21-Gold(DE3)pLysS AG' rho operon leader peptide YP_003038424.1 4487238 R 866768 CDS YP_003038425.1 253775594 8158028 complement(4487480..4487809) 1 NC_012947.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: sea:SeAg_B4142 thioredoxin; thioredoxin 4487809 trxA 8158028 trxA Escherichia coli 'BL21-Gold(DE3)pLysS AG' thioredoxin YP_003038425.1 4487480 R 866768 CDS YP_003038426.1 253775595 8158029 4487940..4489205 1 NC_012947.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4489205 8158029 ECBD_4260 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent RNA helicase RhlB YP_003038426.1 4487940 D 866768 CDS YP_003038427.1 253775596 8158030 4489339..4490823 1 NC_012947.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4490823 8158030 ECBD_4261 Escherichia coli 'BL21-Gold(DE3)pLysS AG' guanosine pentaphosphate phosphohydrolase YP_003038427.1 4489339 D 866768 CDS YP_003038428.1 253775597 8158031 complement(4490870..4492891) 1 NC_012947.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4492891 8158031 ECBD_4262 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent DNA helicase Rep YP_003038428.1 4490870 R 866768 CDS YP_003038429.1 253775598 8158033 4493755..4494036 1 NC_012947.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sdy:SDY_3973 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 4494036 8158033 ECBD_4264 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PpiC-type peptidyl-prolyl cis-trans isomerase YP_003038429.1 4493755 D 866768 CDS YP_003038430.1 253775599 8158034 complement(4494123..4495598) 1 NC_012947.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4495598 8158034 ECBD_4265 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ketol-acid reductoisomerase YP_003038430.1 4494123 R 866768 CDS YP_003038431.1 253775600 8158035 4495748..4496641 1 NC_012947.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4496641 8158035 ECBD_4266 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator IlvY YP_003038431.1 4495748 D 866768 CDS YP_003038432.1 253775601 8158036 complement(4496693..4498240) 1 NC_012947.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4498240 8158036 ECBD_4267 Escherichia coli 'BL21-Gold(DE3)pLysS AG' threonine dehydratase YP_003038432.1 4496693 R 866768 CDS YP_003038433.1 253775602 8158037 complement(4498240..4500090) 1 NC_012947.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4500090 8158037 ECBD_4268 Escherichia coli 'BL21-Gold(DE3)pLysS AG' dihydroxy-acid dehydratase YP_003038433.1 4498240 R 866768 CDS YP_003038434.1 253775603 8158038 complement(4500155..4501084) 1 NC_012947.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4501084 8158038 ECBD_4269 Escherichia coli 'BL21-Gold(DE3)pLysS AG' branched-chain amino acid aminotransferase YP_003038434.1 4500155 R 866768 CDS YP_003038435.1 253775604 8158039 complement(4501104..4501367) 1 NC_012947.1 KEGG: sfv:SFV_3733 acetolactate synthase 2 regulatory subunit; acetolactate synthase 2 regulatory subunit 4501367 ilvM 8158039 ilvM Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetolactate synthase 2 regulatory subunit YP_003038435.1 4501104 R 866768 CDS YP_003038436.1 253775605 8158040 complement(4501364..4503010) 1 NC_012947.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4503010 8158040 ECBD_4271 Escherichia coli 'BL21-Gold(DE3)pLysS AG' acetolactate synthase 2 catalytic subunit YP_003038436.1 4501364 R 866768 CDS YP_003038437.1 253775606 8158041 4503601..4505121 1 NC_012947.1 among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; ATP-dependent protease 4505121 8158041 ECBD_4272 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ATP-dependent protease YP_003038437.1 4503601 D 866768 CDS YP_003038438.1 253775607 8158042 complement(4505146..4505484) 1 NC_012947.1 PFAM: protein of unknown function DUF413; KEGG: sfv:SFV_3736 hypothetical protein; hypothetical protein 4505484 8158042 ECBD_4273 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038438.1 4505146 R 866768 CDS YP_003038439.1 253775608 8158043 4505603..4506442 1 NC_012947.1 negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 4506442 8158043 ECBD_4274 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator HdfR YP_003038439.1 4505603 D 866768 CDS YP_003038440.1 253775609 8158050 4512236..4512928 1 NC_012947.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4512928 8158050 ECBD_4275 Escherichia coli 'BL21-Gold(DE3)pLysS AG' GntR family transcriptional regulator YP_003038440.1 4512236 D 866768 CDS YP_003038441.1 253775610 8158051 4512951..4514378 1 NC_012947.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; drug resistance transporter EmrB/QacA subfamily 4514378 8158051 ECBD_4276 Escherichia coli 'BL21-Gold(DE3)pLysS AG' drug resistance transporter EmrB/QacA subfamily YP_003038441.1 4512951 D 866768 CDS YP_003038442.1 253775611 8158052 complement(4514344..4515327) 1 NC_012947.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4515327 8158052 ECBD_4277 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional repressor RbsR YP_003038442.1 4514344 R 866768 CDS YP_003038443.1 253775612 8158053 complement(4515340..4516269) 1 NC_012947.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4516269 8158053 ECBD_4278 Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribokinase YP_003038443.1 4515340 R 866768 CDS YP_003038444.1 253775613 8158054 complement(4516395..4517285) 1 NC_012947.1 periplasmic substrate-binding component of the ATP-dependent ribose transporter; D-ribose transporter subunit RbsB 4517285 8158054 ECBD_4279 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-ribose transporter subunit RbsB YP_003038444.1 4516395 R 866768 CDS YP_003038445.1 253775614 8158055 complement(4517310..4518275) 1 NC_012947.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4518275 rbsC 8158055 rbsC Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribose ABC transporter permease YP_003038445.1 4517310 R 866768 CDS YP_003038446.1 253775615 8158056 complement(4518280..4519785) 1 NC_012947.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP binding protein 4519785 8158056 ECBD_4281 Escherichia coli 'BL21-Gold(DE3)pLysS AG' D-ribose transporter ATP binding protein YP_003038446.1 4518280 R 866768 CDS YP_003038447.1 253775616 8158058 4520072..4520593 1 NC_012947.1 KEGG: sfx:S1483 IS103 orf; IS103 orf 4520593 8158058 ECBD_4283 Escherichia coli 'BL21-Gold(DE3)pLysS AG' IS103 orf YP_003038447.1 4520072 D 866768 CDS YP_003038448.1 253775617 8158059 4520590..4521441 1 NC_012947.1 PFAM: Integrase catalytic region; KEGG: sfv:SFV_3530 IS150 ORF2; Integrase catalytic region 4521441 8158059 ECBD_4284 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Integrase catalytic region YP_003038448.1 4520590 D 866768 CDS YP_003038449.1 253775618 8158060 complement(4521825..4523693) 1 NC_012947.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transporter Kup 4523693 trkD 8158060 trkD Escherichia coli 'BL21-Gold(DE3)pLysS AG' potassium transporter Kup YP_003038449.1 4521825 R 866768 CDS YP_003038450.1 253775619 8158061 4523916..4525412 1 NC_012947.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA 4525412 8158061 ECBD_4286 Escherichia coli 'BL21-Gold(DE3)pLysS AG' regulatory ATPase RavA YP_003038450.1 4523916 D 866768 CDS YP_003038451.1 253775620 8158062 4525406..4526857 1 NC_012947.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 4526857 yieM 8158062 yieM Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038451.1 4525406 D 866768 CDS YP_003038452.1 253775621 8158063 complement(4526862..4527854) 1 NC_012947.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4527854 8158063 ECBD_4288 Escherichia coli 'BL21-Gold(DE3)pLysS AG' asparagine synthetase AsnA YP_003038452.1 4526862 R 866768 CDS YP_003038453.1 253775622 8158064 4528006..4528464 1 NC_012947.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4528464 8158064 ECBD_4289 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator AsnC YP_003038453.1 4528006 D 866768 CDS YP_003038454.1 253775623 8158065 4528554..4528997 1 NC_012947.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4528997 8158065 ECBD_4290 Escherichia coli 'BL21-Gold(DE3)pLysS AG' flavodoxin YP_003038454.1 4528554 D 866768 CDS YP_003038455.1 253775624 8158066 4529376..4531265 1 NC_012947.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4531265 8158066 ECBD_4291 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_003038455.1 4529376 D 866768 CDS YP_003038456.1 253775625 8158067 4531329..4531952 1 NC_012947.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4531952 gidB 8158067 gidB Escherichia coli 'BL21-Gold(DE3)pLysS AG' 16S rRNA methyltransferase GidB YP_003038456.1 4531329 D 866768 CDS YP_003038457.1 253775626 8158068 4532569..4532949 1 NC_012947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 4532949 8158068 ECBD_4293 Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit I YP_003038457.1 4532569 D 866768 CDS YP_003038458.1 253775627 8158069 4532958..4533773 1 NC_012947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4533773 8158069 ECBD_4294 Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit A YP_003038458.1 4532958 D 866768 CDS YP_003038459.1 253775628 8158071 4533820..4534059 1 NC_012947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4534059 8158071 ECBD_4295 Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit C YP_003038459.1 4533820 D 866768 CDS YP_003038460.1 253775629 8158072 4534121..4534591 1 NC_012947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4534591 8158072 ECBD_4296 Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit B YP_003038460.1 4534121 D 866768 CDS YP_003038461.1 253775630 8158070 4534606..4535139 1 NC_012947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4535139 8158070 ECBD_4297 Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit delta YP_003038461.1 4534606 D 866768 CDS YP_003038462.1 253775631 8156664 4535152..4536693 1 NC_012947.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4536693 8156664 ECBD_4298 Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit alpha YP_003038462.1 4535152 D 866768 CDS YP_003038463.1 253775632 8156665 4536744..4537607 1 NC_012947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4537607 8156665 ECBD_4299 Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit gamma YP_003038463.1 4536744 D 866768 CDS YP_003038464.1 253775633 8156666 4537634..4539016 1 NC_012947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4539016 8156666 ECBD_4300 Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit beta YP_003038464.1 4537634 D 866768 CDS YP_003038465.1 253775634 8156667 4539037..4539456 1 NC_012947.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4539456 atpC 8156667 atpC Escherichia coli 'BL21-Gold(DE3)pLysS AG' F0F1 ATP synthase subunit epsilon YP_003038465.1 4539037 D 866768 CDS YP_003038466.1 253775635 8156668 4539809..4541179 1 NC_012947.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4541179 glmU 8156668 glmU Escherichia coli 'BL21-Gold(DE3)pLysS AG' bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_003038466.1 4539809 D 866768 CDS YP_003038467.1 253775636 8156669 4541341..4543170 1 NC_012947.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4543170 8156669 ECBD_4303 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glucosamine--fructose-6-phosphate aminotransferase YP_003038467.1 4541341 D 866768 CDS YP_003038468.1 253775637 8156670 4543484..4544524 1 NC_012947.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfx:S4045 phosphate transporter subunit; phosphate ABC transporter substrate-binding protein 4544524 8156670 ECBD_4304 Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate ABC transporter substrate-binding protein YP_003038468.1 4543484 D 866768 CDS YP_003038469.1 253775638 8156671 4544610..4545569 1 NC_012947.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 4545569 pstC 8156671 pstC Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate transporter permease subunit PstC YP_003038469.1 4544610 D 866768 CDS YP_003038470.1 253775639 8156672 4545569..4546459 1 NC_012947.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 4546459 pstA 8156672 pstA Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate transporter permease subunit PtsA YP_003038470.1 4545569 D 866768 CDS YP_003038471.1 253775640 8156673 4546642..4547415 1 NC_012947.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 4547415 pstB 8156673 pstB Escherichia coli 'BL21-Gold(DE3)pLysS AG' phosphate transporter ATP-binding protein YP_003038471.1 4546642 D 866768 CDS YP_003038472.1 253775641 8156674 4547430..4548155 1 NC_012947.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 4548155 8156674 ECBD_4308 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional regulator PhoU YP_003038472.1 4547430 D 866768 CDS YP_003038473.1 253775642 8156675 4548441..4549277 1 NC_012947.1 positive regulator of the beta-glucoside operon; transcriptional antiterminator; transcriptional antiterminator BglG 4549277 8156675 ECBD_4309 Escherichia coli 'BL21-Gold(DE3)pLysS AG' transcriptional antiterminator BglG YP_003038473.1 4548441 D 866768 CDS YP_003038474.1 253775643 8156676 4549410..4551287 1 NC_012947.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system beta-glucoside-specific transporter subunits IIABC 4551287 8156676 ECBD_4310 Escherichia coli 'BL21-Gold(DE3)pLysS AG' PTS system beta-glucoside-specific transporter subunits IIABC YP_003038474.1 4549410 D 866768 CDS YP_003038475.1 253775644 8156677 4551306..4552700 1 NC_012947.1 PFAM: glycoside hydrolase family 1; KEGG: efe:EFER_4019 cryptic phospho-beta-glucosidase B; glycoside hydrolase family 1 4552700 8156677 ECBD_4311 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase family 1 YP_003038475.1 4551306 D 866768 CDS YP_003038476.1 253775645 8156678 4552786..4554402 1 NC_012947.1 PFAM: porin LamB type; KEGG: ssn:SSON_3915 receptor protein; porin LamB type 4554402 8156678 ECBD_4312 Escherichia coli 'BL21-Gold(DE3)pLysS AG' porin LamB type YP_003038476.1 4552786 D 866768 CDS YP_003038477.1 253775646 8156679 4554429..4555598 1 NC_012947.1 PFAM: glycoside hydrolase family 13 domain protein; esterase; KEGG: elf:LF82_3383 uncharacterized protein yiel; glycoside hydrolase family 13 domain protein 4555598 8156679 ECBD_4313 Escherichia coli 'BL21-Gold(DE3)pLysS AG' glycoside hydrolase family 13 domain protein YP_003038477.1 4554429 D 866768 CDS YP_003038478.1 253775647 8156680 4555613..4556335 1 NC_012947.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sfv:SFV_3789 6-phosphogluconolactonase; 6-phosphogluconolactonase 4556335 8156680 ECBD_4314 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 6-phosphogluconolactonase YP_003038478.1 4555613 D 866768 CDS YP_003038479.1 253775648 8156681 complement(4556397..4556984) 1 NC_012947.1 PFAM: protein of unknown function UPF0167; KEGG: efe:EFER_4015 hypothetical protein; hypothetical protein 4556984 8156681 ECBD_4315 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038479.1 4556397 R 866768 CDS YP_003038480.1 253775649 8156682 complement(4557033..4557506) 1 NC_012947.1 might be involved in hypersensitivity to nitrofurzone; inner membrane protein 4557506 8156682 ECBD_4316 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane protein YP_003038480.1 4557033 R 866768 CDS YP_003038481.1 253775650 8156683 complement(4557573..4558238) 1 NC_012947.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 4558238 8156683 ECBD_4317 Escherichia coli 'BL21-Gold(DE3)pLysS AG' 6-phosphogluconate phosphatase YP_003038481.1 4557573 R 866768 CDS YP_003038482.1 253775651 8156684 4558405..4559742 1 NC_012947.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: elf:LF82_3380 inner membrane protein YieG; xanthine/uracil/vitamin C permease 4559742 8156684 ECBD_4318 Escherichia coli 'BL21-Gold(DE3)pLysS AG' xanthine/uracil/vitamin C permease YP_003038482.1 4558405 D 866768 CDS YP_003038483.1 253775652 8156685 complement(4559796..4560362) 1 NC_012947.1 PFAM: NADPH-dependent FMN reductase; KEGG: sfv:SFV_3798 hypothetical protein; NADPH-dependent FMN reductase 4560362 8156685 ECBD_4319 Escherichia coli 'BL21-Gold(DE3)pLysS AG' NADPH-dependent FMN reductase YP_003038483.1 4559796 R 866768 CDS YP_003038484.1 253775653 8156686 complement(4560384..4561133) 1 NC_012947.1 KEGG: sbc:SbBS512_E4210 hypothetical protein; hypothetical protein 4561133 8156686 ECBD_4320 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038484.1 4560384 R 866768 CDS YP_003038485.1 253775654 8156687 complement(4561290..4562249) 1 NC_012947.1 Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4562249 8156687 ECBD_4321 Escherichia coli 'BL21-Gold(DE3)pLysS AG' DNA-binding transcriptional regulator YidZ YP_003038485.1 4561290 R 866768 CDS YP_003038486.1 253775655 8156688 complement(4562224..4563399) 1 NC_012947.1 Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4563399 8156688 ECBD_4322 Escherichia coli 'BL21-Gold(DE3)pLysS AG' multidrug efflux system protein MdtL YP_003038486.1 4562224 R 866768 CDS YP_003038487.1 253775656 8156689 complement(4563531..4564778) 1 NC_012947.1 tryptophan transporter of low affinity; tryptophan permease TnaB 4564778 8156689 ECBD_4323 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tryptophan permease TnaB YP_003038487.1 4563531 R 866768 CDS YP_003038488.1 253775657 8156690 complement(4564869..4566284) 1 NC_012947.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 4566284 tnaA 8156690 tnaA Escherichia coli 'BL21-Gold(DE3)pLysS AG' tryptophanase YP_003038488.1 4564869 R 866768 CDS YP_003038489.1 253775658 8156691 complement(4566505..4566579) 1 NC_012947.1 TIGRFAM: tryptophanase leader peptide; PFAM: tryptophanese operon leader peptide; KEGG: efe:EFER_4509 tryptophanase leader peptide; tryptophanase leader peptide 4566579 8156691 ECBD_4325 Escherichia coli 'BL21-Gold(DE3)pLysS AG' tryptophanase leader peptide YP_003038489.1 4566505 R 866768 CDS YP_003038490.1 253775659 8156692 complement(4566822..4568186) 1 NC_012947.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4568186 trmE 8156692 trmE Escherichia coli 'BL21-Gold(DE3)pLysS AG' tRNA modification GTPase TrmE YP_003038490.1 4566822 R 866768 CDS YP_003038491.1 253775660 8156693 complement(4568292..4569938) 1 NC_012947.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 4569938 8156693 ECBD_4327 Escherichia coli 'BL21-Gold(DE3)pLysS AG' inner membrane protein translocase component YidC YP_003038491.1 4568292 R 866768 CDS YP_003038492.1 253775661 8156694 complement(4569941..4570198) 1 NC_012947.1 PFAM: protein of unknown function DUF37; KEGG: sdy:SDY_4187 hypothetical protein; hypothetical protein 4570198 8156694 ECBD_4328 Escherichia coli 'BL21-Gold(DE3)pLysS AG' hypothetical protein YP_003038492.1 4569941 R 866768 CDS YP_003038493.1 253775662 8156695 complement(4570162..4570488) 1 NC_012947.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4570488 rnpA 8156695 rnpA Escherichia coli 'BL21-Gold(DE3)pLysS AG' ribonuclease P YP_003038493.1 4570162 R 866768 CDS YP_003038494.1 253775663 8156696 complement(4570538..4570678) 1 NC_012947.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4570678 rpmH 8156696 rpmH Escherichia coli 'BL21-Gold(DE3)pLysS AG' 50S ribosomal protein L34 YP_003038494.1 4570538 R 866768 CDS