-- dump date 20250216_235432 -- class Genbank::Contig -- table contig_comment -- id comment NZ_CP042831.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP042831.1.REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun.REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: FullREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: YesREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0xREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBioREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 29REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 29 CDSs (without protein) :: 29REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 29 CDSs (without protein) :: 29 Pseudo Genes (ambiguous residues) :: 0 of 29REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 29 CDSs (without protein) :: 29 Pseudo Genes (ambiguous residues) :: 0 of 29 Pseudo Genes (frameshifted) :: 18 of 29REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 29 CDSs (without protein) :: 29 Pseudo Genes (ambiguous residues) :: 0 of 29 Pseudo Genes (frameshifted) :: 18 of 29 Pseudo Genes (incomplete) :: 10 of 29REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 29 CDSs (without protein) :: 29 Pseudo Genes (ambiguous residues) :: 0 of 29 Pseudo Genes (frameshifted) :: 18 of 29 Pseudo Genes (incomplete) :: 10 of 29 Pseudo Genes (internal stop) :: 1 of 29REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 29 CDSs (without protein) :: 29 Pseudo Genes (ambiguous residues) :: 0 of 29 Pseudo Genes (frameshifted) :: 18 of 29 Pseudo Genes (incomplete) :: 10 of 29 Pseudo Genes (internal stop) :: 1 of 29 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP042831.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Ji-Quan Sun. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: SOAPdenovo v. 2019-08 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 222.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008000935.1-RS_2024_10_23 Annotation Date :: 10/23/2024 06:08:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,697 CDSs (total) :: 3,638 Genes (coding) :: 3,609 CDSs (with protein) :: 3,609 Genes (RNA) :: 59 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 29 CDSs (without protein) :: 29 Pseudo Genes (ambiguous residues) :: 0 of 29 Pseudo Genes (frameshifted) :: 18 of 29 Pseudo Genes (incomplete) :: 10 of 29 Pseudo Genes (internal stop) :: 1 of 29 ##Genome-Annotation-Data-END## COMPLETENESS: full length.