-- dump date 20140619_094033 -- class Genbank::CDS -- table cds_note -- id note YP_001192358.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_001192359.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001192360.1 PFAM: protein of unknown function UPF0029 YP_001192361.1 PFAM: thioesterase superfamily protein YP_001192362.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001192363.1 PFAM: low molecular weight phosphotyrosine protein phosphatase YP_001192364.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001192366.1 PFAM: aminotransferase, class I and II YP_001192367.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001192368.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase YP_001192369.1 PFAM: Septum formation initiator YP_001192371.1 MDM; functions in conversion of succinate to propionate YP_001192373.1 PFAM: aminodeoxychorismate lyase YP_001192374.1 PFAM: GCN5-related N-acetyltransferase YP_001192375.1 PFAM: diaminopimelate epimerase YP_001192376.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001192377.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_001192378.1 PFAM: regulatory protein, AsnC/Lrp family YP_001192379.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_001192380.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase YP_001192381.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001192382.1 PFAM: initiation factor 3 YP_001192383.1 PFAM: ribosomal protein L35 YP_001192384.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001192385.1 PFAM: cyclic nucleotide-binding YP_001192386.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase YP_001192387.1 PFAM: ATP-binding region, ATPase domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001192388.1 PFAM: ATP-binding region, ATPase domain protein domain protein YP_001192389.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001192390.1 PFAM: response regulator receiver YP_001192391.1 PFAM: Endonuclease/exonuclease/phosphatase; SMART: deoxyribonuclease I YP_001192393.1 PFAM: regulatory protein, LuxR; response regulator receiver YP_001192395.1 PFAM: histidine kinase, dimerisation and phosphoacceptor region YP_001192398.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase YP_001192399.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001192400.1 PFAM: protein of unknown function DUF6, transmembrane YP_001192401.1 PFAM: permease YjgP/YjgQ family protein YP_001192402.1 TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001192403.1 PFAM: YdjC family protein YP_001192405.1 PFAM: Transketolase domain protein YP_001192406.1 PFAM: Transketolase, central region; Transketolase domain protein YP_001192408.1 PFAM: RNA-binding S4 domain protein YP_001192409.1 PFAM: phosphoribosyltransferase YP_001192410.1 PFAM: shikimate kinase YP_001192412.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001192413.1 PFAM: regulatory protein, MerR YP_001192414.1 TIGRFAM: Phytoene dehydrogenase-related protein; PFAM: amine oxidase; FAD dependent oxidoreductase YP_001192415.1 PFAM: Squalene/phytoene synthase YP_001192416.1 PFAM: Carotene hydroxylase YP_001192418.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein YP_001192419.1 PFAM: ABC-1 domain protein YP_001192421.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731 YP_001192423.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001192424.1 PFAM: thioesterase superfamily protein YP_001192425.1 PFAM: protein of unknown function DUF195 YP_001192428.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001192431.1 PFAM: Endonuclease/exonuclease/phosphatase YP_001192432.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001192434.1 PFAM: pseudouridine synthase YP_001192435.1 PFAM: tRNA/rRNA methyltransferase (SpoU) YP_001192437.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001192439.1 PFAM: transport system permease YP_001192440.1 PFAM: periplasmic binding protein YP_001192442.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown YP_001192443.1 PFAM: cobalbumin biosynthesis enzyme YP_001192444.1 PFAM: nitroreductase; Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_001192446.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS YP_001192447.1 PFAM: Phosphoglycerate mutase YP_001192448.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192450.1 PFAM: peptidase S41 YP_001192451.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001192455.1 PFAM: YiaAB two helix domain protein YP_001192456.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001192457.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_001192461.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter YP_001192463.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001192465.1 involved in lipopolysaccharide biosynthesis; eIF-2Bgamma/eIF-2Bepsilon subunits YP_001192466.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001192468.1 PFAM: glycosyl transferase, family 2 YP_001192469.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III YP_001192470.1 PFAM: helix-turn-helix, HxlR type YP_001192471.1 PFAM: nitroreductase YP_001192472.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001192475.1 PFAM: TonB-dependent receptor, plug YP_001192476.1 PFAM: peptidase M23B YP_001192479.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001192480.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001192481.1 PFAM: phage integrase; phage integrase domain protein SAM domain protein YP_001192485.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase, class II YP_001192487.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_001192488.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001192494.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001192495.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001192496.1 PFAM: histone family protein DNA-binding protein YP_001192497.1 PFAM: protein of unknown function DUF179 YP_001192498.1 PFAM: aminotransferase, class IV YP_001192502.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II YP_001192503.1 PFAM: GCN5-related N-acetyltransferase YP_001192504.1 PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001192506.1 PFAM: FecR protein YP_001192507.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192510.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain YP_001192513.1 SMART: helix-turn-helix- domain containing protein, AraC type YP_001192514.1 PFAM: bifunctional deaminase-reductase domain protein YP_001192515.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_001192517.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001192518.1 PFAM: FecR protein YP_001192519.1 PFAM: Secreted repeat of unknown function YP_001192524.1 PFAM: aldo/keto reductase YP_001192525.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001192526.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger YP_001192527.1 PFAM: glycosidase, PH1107-related YP_001192529.1 PFAM: regulatory protein, LuxR YP_001192532.1 PFAM: Radical SAM domain protein YP_001192536.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001192538.1 PFAM: pentapeptide repeat protein YP_001192539.1 PFAM: Fibronectin, type III domain protein YP_001192540.1 PFAM: RagB/SusD domain protein YP_001192541.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192542.1 PFAM: major facilitator superfamily MFS_1 YP_001192543.1 PFAM: helix-turn-helix- domain containing protein, AraC type; Cupin 2, conserved barrel domain protein YP_001192546.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001192547.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein YP_001192548.1 PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3 YP_001192551.1 PFAM: transcriptional regulator PadR family protein YP_001192552.1 PFAM: PspC domain protein YP_001192555.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001192557.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A YP_001192558.1 PFAM: Cobyrinic acid a,c-diamide synthase YP_001192559.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease YP_001192561.1 PFAM: dihydrodipicolinate reductase YP_001192562.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_001192564.1 PFAM: Endonuclease/exonuclease/phosphatase YP_001192565.1 PFAM: Rhomboid family protein YP_001192566.1 PFAM: Rhomboid family protein YP_001192567.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: DNA mismatch repair protein, C-terminal domain protein YP_001192568.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001192569.1 PFAM: Tetratricopeptide TPR_2 repeat protein YP_001192570.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein YP_001192572.1 PFAM: glycosyl transferase, group 1 YP_001192573.1 PFAM: aminotransferase, class V; aminotransferase, class I and II YP_001192574.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001192575.1 PFAM: GCN5-related N-acetyltransferase YP_001192576.1 PFAM: Negative transcriptional regulator YP_001192577.1 PFAM: glycosyl transferase, family 2 YP_001192578.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001192580.1 PFAM: protein of unknown function DUF1696 YP_001192581.1 PFAM: peptidase M48, Ste24p YP_001192582.1 PFAM: peptidase M48, Ste24p YP_001192583.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001192584.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001192585.1 PFAM: TPR repeat-containing protein; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: Tetratricopeptide domain protein YP_001192586.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_001192587.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB YP_001192589.1 PFAM: protein of unknown function DUF34 YP_001192590.1 PFAM: protein of unknown function DUF164 YP_001192592.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001192598.1 PFAM: Mg2+ transporter protein, CorA family protein YP_001192599.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase YP_001192600.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_001192601.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein YP_001192602.1 PFAM: lipolytic enzyme, G-D-S-L family; Peptidoglycan-binding LysM YP_001192605.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192606.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001192607.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192608.1 PFAM: CutC family protein YP_001192609.1 PFAM: Excinuclease ABC, C subunit domain protein YP_001192610.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001192612.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001192613.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen YP_001192615.1 molecular chaperone YP_001192621.1 TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase, type I YP_001192622.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001192623.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_001192624.1 TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase YP_001192625.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_001192626.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_001192627.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase YP_001192628.1 PFAM: DGPFAETKE family protein YP_001192629.1 PFAM: sigma-70 region 2 domain protein YP_001192630.1 PFAM: protein of unknown function DUF306, Meta and HslJ YP_001192631.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein YP_001192632.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001192634.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001192636.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001192637.1 TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_001192638.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase YP_001192639.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase YP_001192640.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001192641.1 PFAM: glycoside hydrolase, family 25 YP_001192642.1 PFAM: CDP-alcohol phosphatidyltransferase YP_001192645.1 PFAM: sugar transferase YP_001192647.1 PFAM: glycosyl transferase, group 1 YP_001192648.1 PFAM: glycosyl transferase, group 1 YP_001192650.1 PFAM: glycosyl transferase, family 2 YP_001192653.1 PFAM: glycosyl transferase, family 2 YP_001192654.1 PFAM: glycosyl transferase, group 1 YP_001192657.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein YP_001192659.1 PFAM: UDP-N-acetylglucosamine 2-epimerase YP_001192660.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain YP_001192661.1 PFAM: acyltransferase 3 YP_001192662.1 PFAM: acylneuraminate cytidylyltransferase YP_001192663.1 PFAM: glycosyl transferase, group 1 YP_001192664.1 PFAM: glycosyl transferase, family 2 YP_001192665.1 PFAM: glycosyl transferase, family 2 YP_001192667.1 PFAM: glycosyl transferase, group 1 YP_001192669.1 PFAM: glycosyl transferase, family 2 YP_001192670.1 PFAM: glycosyl transferase, family 2 YP_001192672.1 PFAM: glycosyl transferase, family 2 YP_001192673.1 PFAM: glycosyl transferase, family 2 YP_001192676.1 PFAM: Methyltransferase type 12 YP_001192678.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_001192679.1 TIGRFAM: methyltransferase FkbM family YP_001192680.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001192681.1 PFAM: glycosyl transferase, group 1 YP_001192682.1 PFAM: ABC-2 type transporter YP_001192683.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain YP_001192684.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase YP_001192685.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_001192686.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_001192687.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase YP_001192688.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_001192689.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_001192691.1 PFAM: glycosyl transferase, family 4 YP_001192692.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain YP_001192693.1 PFAM: glycosyl transferase, group 1 YP_001192695.1 PFAM: glycosyl transferase, group 1 YP_001192696.1 PFAM: glycosyl transferase, group 1 YP_001192698.1 PFAM: glycosyl transferase, family 2 YP_001192701.1 PFAM: WavE lipopolysaccharide synthesis YP_001192702.1 PFAM: Nucleotidyl transferase YP_001192704.1 PFAM: Nucleotidyl transferase YP_001192705.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001192707.1 PFAM: lipopolysaccharide biosynthesis protein YP_001192708.1 PFAM: polysaccharide export protein YP_001192709.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain YP_001192710.1 PFAM: Nucleotidyl transferase YP_001192711.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase YP_001192712.1 PFAM: transcription antitermination protein NusG; SMART: NGN domain protein YP_001192713.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase YP_001192714.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain YP_001192716.1 PFAM: polysaccharide export protein YP_001192717.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001192719.1 PFAM: multiple antibiotic resistance (MarC)-related protein YP_001192721.1 PFAM: amidinotransferase YP_001192722.1 TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_001192723.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001192724.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001192725.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001192726.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001192727.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001192728.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001192729.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001192730.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_001192731.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001192732.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001192733.1 late assembly protein YP_001192734.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001192735.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001192736.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E YP_001192737.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001192738.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001192739.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001192740.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001192741.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001192742.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001192743.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001192744.1 one of the stabilizing components for the large ribosomal subunit YP_001192745.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001192746.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001192747.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001192748.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001192749.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001192750.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001192751.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001192752.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001192753.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001192754.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001192755.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001192756.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001192758.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192761.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding YP_001192764.1 PFAM: Rhomboid family protein YP_001192765.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_001192767.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001192768.1 PFAM: DNA repair protein RadC YP_001192769.1 PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein YP_001192770.1 PFAM: alpha-2-macroglobulin domain protein YP_001192773.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001192774.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region YP_001192775.1 PFAM: adenylate kinase YP_001192776.1 PFAM: phosphoribosyltransferase YP_001192778.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192780.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp YP_001192781.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001192784.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F YP_001192785.1 PFAM: protein of unknown function DUF218 YP_001192786.1 PFAM: HicB family protein YP_001192788.1 PFAM: sodium/hydrogen exchanger YP_001192798.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731 YP_001192800.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_001192801.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001192803.1 PFAM: glycosyl transferase, family 2 YP_001192804.1 PFAM: protein of unknown function DUF140 YP_001192805.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001192808.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001192809.1 PFAM: peptidase M28 YP_001192810.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain YP_001192812.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal YP_001192814.1 PFAM: Biopolymer transport protein ExbD/TolR YP_001192815.1 PFAM: MotA/TolQ/ExbB proton channel YP_001192816.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein YP_001192817.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001192818.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001192819.1 PFAM: regulatory protein, MarR YP_001192820.1 PFAM: helix-turn-helix domain protein YP_001192821.1 PFAM: regulatory protein, MerR YP_001192822.1 PFAM: beta-lactamase YP_001192824.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001192825.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase YP_001192826.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001192827.1 PFAM: protein of unknown function DUF214 YP_001192828.1 PFAM: protein of unknown function DUF214 YP_001192829.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001192830.1 PFAM: cyclic nucleotide-binding YP_001192832.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001192834.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR YP_001192837.1 PFAM: protein of unknown function DUF214 YP_001192838.1 PFAM: protein of unknown function UPF0153 YP_001192839.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001192841.1 PFAM: Radical SAM domain protein YP_001192842.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001192844.1 TIGRFAM: TonB family protein YP_001192847.1 PFAM: MotA/TolQ/ExbB proton channel YP_001192848.1 PFAM: protein of unknown function DUF853, NPT hydrolase YP_001192849.1 PFAM: monooxygenase, FAD-binding YP_001192851.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001192852.1 PFAM: beta-lactamase YP_001192854.1 PFAM: beta-lactamase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001192856.1 PFAM: peptidase S45, penicillin amidase YP_001192860.1 TIGRFAM: kynureninase YP_001192861.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001192862.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_001192863.1 PFAM: MazG nucleotide pyrophosphohydrolase YP_001192866.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001192867.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001192868.1 PFAM: Chorismate mutase; DAHP synthetase I/KDSA YP_001192869.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_001192870.1 PFAM: aminotransferase, class I and II YP_001192871.1 PFAM: prephenate dehydratase YP_001192872.1 PFAM: protein of unknown function DUF1501 YP_001192875.1 TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit, N terminal domain protein YP_001192876.1 PFAM: ribonucleotide reductase YP_001192878.1 PFAM: multiple antibiotic resistance (MarC)-related protein YP_001192880.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001192883.1 TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41 YP_001192884.1 PFAM: CMP/dCMP deaminase, zinc-binding YP_001192887.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_001192888.1 PFAM: GCN5-related N-acetyltransferase YP_001192889.1 TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_001192890.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192891.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001192892.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001192896.1 PFAM: phosphate-selective porin O and P YP_001192897.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001192898.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001192899.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001192904.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib YP_001192905.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain YP_001192907.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001192908.1 PFAM: glycosyl transferase, family 2 YP_001192910.1 PFAM: Uroporphyrinogen III synthase HEM4 YP_001192911.1 PFAM: regulatory protein, AsnC/Lrp family YP_001192912.1 PFAM: peptidase, membrane zinc metallopeptidase YP_001192913.1 PFAM: regulatory protein, LuxR; response regulator receiver YP_001192914.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region YP_001192917.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2 YP_001192918.1 PFAM: alpha/beta hydrolase fold YP_001192919.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001192921.1 PFAM: protein of unknown function DUF214 YP_001192923.1 TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_001192924.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_001192928.1 Catalyzes the phosphorylation of UMP to UDP YP_001192929.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001192931.1 PFAM: Ankyrin YP_001192932.1 PFAM: sodium/hydrogen exchanger YP_001192933.1 PFAM: response regulator receiver YP_001192937.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001192938.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein YP_001192940.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_001192942.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001192944.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1 YP_001192945.1 PFAM: major facilitator superfamily MFS_1 YP_001192946.1 PFAM: alpha/beta hydrolase fold YP_001192949.1 PFAM: metallophosphoesterase YP_001192950.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_001192952.1 PFAM: Enoyl-CoA hydratase/isomerase YP_001192953.1 PFAM: outer membrane chaperone Skp (OmpH) YP_001192956.1 PFAM: PKD domain containing protein; leucine-rich repeat protein; Two component regulator three Y domain protein; SMART: leucine-rich repeat-containing protein, typical subtype YP_001192957.1 SMART: PKD domain containing protein YP_001192958.1 PFAM: PKD domain containing protein; leucine-rich repeat protein; von Willebrand factor, type A; SMART: leucine-rich repeat-containing protein, typical subtype; Immunoglobulin subtype; Immunoglobulin domain protein YP_001192960.1 TIGRFAM: YD repeat protein; PFAM: Thrombospondin type 3 repeat; YD repeat-containing protein YP_001192962.1 PFAM: phage integrase YP_001192968.1 PFAM: type II secretion system protein YP_001192971.1 PFAM: type II secretion system protein E; SMART: AAA ATPase YP_001192972.1 PFAM: type II and III secretion system protein; NolW domain protein YP_001192975.1 PFAM: Fibronectin, type III domain protein YP_001192986.1 PFAM: helix-turn-helix domain protein YP_001192988.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51 YP_001192989.1 PFAM: FAD dependent oxidoreductase YP_001192990.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein YP_001192991.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001192992.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase YP_001192998.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp YP_001192999.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein YP_001193000.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001193001.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001193002.1 PFAM: protein of unknown function DUF177 YP_001193003.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_001193004.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001193006.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_001193008.1 PFAM: DNA mismatch endonuclease vsr YP_001193013.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001193018.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001193019.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193021.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter YP_001193022.1 PFAM: Endoribonuclease L-PSP YP_001193023.1 PFAM: PfkB domain protein YP_001193024.1 PFAM: KDPG and KHG aldolase YP_001193025.1 PFAM: alanine racemase domain protein YP_001193026.1 PFAM: peptidase M19, renal dipeptidase YP_001193027.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein YP_001193028.1 PFAM: glycoside hydrolase, family 20; PA14 domain protein; SMART: PA14-related domain protein YP_001193029.1 PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001193030.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001193031.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_001193032.1 PFAM: Hydroxymethylglutaryl-coenzyme A synthase, N-terminal domain; Hydroxymethylglutaryl-coenzyme A synthase C terminal domain protein YP_001193037.1 PFAM: GCN5-related N-acetyltransferase YP_001193040.1 PFAM: helix-turn-helix domain protein YP_001193042.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein YP_001193043.1 PFAM: alpha/beta hydrolase fold YP_001193044.1 PFAM: Ferritin, Dps family protein YP_001193046.1 PFAM: protein of unknown function DUF124 YP_001193047.1 PFAM: alpha/beta hydrolase fold YP_001193051.1 PFAM: Thrombospondin type 3 repeat; OmpA/MotB domain protein YP_001193052.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_001193053.1 PFAM: UvrD/REP helicase YP_001193054.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001193055.1 PFAM: Roadblock/LC7 family protein YP_001193058.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001193060.1 TIGRFAM: DNA repair protein RecO YP_001193062.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_001193064.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001193066.1 PFAM: AAA-4 family protein YP_001193067.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR YP_001193068.1 PFAM: aldo/keto reductase YP_001193069.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5 YP_001193073.1 PFAM: von Willebrand factor, type A YP_001193074.1 PFAM: von Willebrand factor, type A YP_001193075.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001193077.1 PFAM: TPR repeat-containing protein; protein of unknown function DUF1058; Tetratricopeptide TPR_2 repeat protein; SH3, type 3 domain protein; SMART: Tetratricopeptide domain protein YP_001193078.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_001193079.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase YP_001193080.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001193081.1 PFAM: Patatin YP_001193082.1 PFAM: homogentisate 1,2-dioxygenase YP_001193083.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001193086.1 PFAM: peptidase M23B YP_001193089.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001193090.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193092.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A YP_001193094.1 PFAM: arsenate reductase and related YP_001193095.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732 YP_001193096.1 Essential for recycling GMP and indirectly, cGMP YP_001193097.1 PFAM: S23 ribosomal protein YP_001193098.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001193099.1 PFAM: Nicotinate phosphoribosyltransferase and related YP_001193100.1 PFAM: ADP-ribosylation/Crystallin J1 YP_001193101.1 PFAM: metallophosphoesterase YP_001193102.1 PFAM: phosphotransferase KptA/Tpt1 YP_001193103.1 SMART: Appr-1-p processing domain protein YP_001193104.1 PFAM: conserved hypothetical protein CHP02464 YP_001193105.1 PFAM: adenylosuccinate synthetase YP_001193109.1 TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_001193110.1 PFAM: NUDIX hydrolase YP_001193111.1 PFAM: PKD domain containing protein YP_001193112.1 PFAM: regulatory protein, LysR YP_001193113.1 PFAM: iron-containing alcohol dehydrogenase YP_001193115.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_001193116.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193119.1 PFAM: Di-haem cytochrome c peroxidase YP_001193121.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001193124.1 PFAM: Colicin V production protein YP_001193126.1 PFAM: protein of unknown function DUF303, acetylesterase ; glycoside hydrolase family 2, sugar binding YP_001193127.1 PFAM: glycoside hydrolase, family 5 YP_001193128.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001193129.1 PFAM: glycoside hydrolase, family 39 YP_001193131.1 PFAM: glycoside hydrolase, family 31 YP_001193132.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001193134.1 PFAM: RagB/SusD domain protein YP_001193135.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193136.1 PFAM: NUDIX hydrolase YP_001193137.1 PFAM: NUDIX hydrolase YP_001193139.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001193141.1 PFAM: Helix-turn-helix, type 11 domain protein YP_001193142.1 PFAM: DinB family protein YP_001193143.1 PFAM: DinB family protein YP_001193144.1 TIGRFAM: thiamine-monophosphate kinase YP_001193145.1 PFAM: response regulator receiver YP_001193146.1 PFAM: TPR repeat-containing protein; ATP-binding region, ATPase domain protein domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001193148.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001193149.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001193151.1 PFAM: Proprotein convertase, P YP_001193152.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase YP_001193154.1 TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001193155.1 SMART: transcription factor jumonji, jmjC domain protein YP_001193158.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11 YP_001193160.1 PFAM: regulatory protein RecX YP_001193161.1 PFAM: D-galactoside/L-rhamnose binding SUEL lectin YP_001193162.1 PFAM: beta-ketoacyl synthase YP_001193163.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III YP_001193164.1 TIGRFAM: dethiobiotin synthase YP_001193165.1 PFAM: GumN family protein YP_001193167.1 PFAM: aminotransferase, class I and II; aminotransferase class-III YP_001193171.1 PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit YP_001193172.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001193174.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193175.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001193177.1 PFAM: Starch synthase catalytic domain protein YP_001193178.1 TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain; PFAM: Pantoate-beta-alanine ligase YP_001193179.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001193180.1 PFAM: esterase YP_001193181.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001193182.1 PFAM: glycosyl transferase, family 51 YP_001193183.1 PFAM: aldo/keto reductase YP_001193184.1 PFAM: OmpA/MotB domain protein YP_001193185.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_001193186.1 PFAM: phospholipid/glycerol acyltransferase YP_001193188.1 PFAM: protein of unknown function DUF805 YP_001193189.1 PFAM: TM2 domain containing protein+B7201 YP_001193190.1 PFAM: TM2 domain containing protein+B7201 YP_001193191.1 PFAM: protein of unknown function DUF805 YP_001193192.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001193193.1 PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger YP_001193195.1 TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein YP_001193196.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region YP_001193197.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001193199.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_001193200.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001193201.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001193208.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_001193209.1 SMART: zinc finger, CDGSH-type domain protein YP_001193210.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001193213.1 PFAM: band 7 protein YP_001193214.1 PFAM: protein of unknown function DUF6, transmembrane YP_001193215.1 PFAM: Haloacid dehalogenase domain protein hydrolase YP_001193216.1 PFAM: chloramphenicol acetyltransferase YP_001193217.1 PFAM: OmpA/MotB domain protein YP_001193219.1 PFAM: Ferritin, Dps family protein YP_001193221.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_001193222.1 PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001193224.1 PFAM: peptidase M20; peptidase M28 YP_001193225.1 SMART: Rhodanese domain protein YP_001193226.1 PFAM: regulatory protein, LysR; LysR, substrate-binding YP_001193227.1 PFAM: GCN5-related N-acetyltransferase YP_001193228.1 PFAM: NAD-dependent epimerase/dehydratase YP_001193229.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase YP_001193232.1 PFAM: nucleoside recognition domain protein YP_001193234.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region YP_001193235.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein YP_001193236.1 PFAM: UMUC domain protein DNA-repair protein YP_001193237.1 PFAM: metallophosphoesterase YP_001193239.1 PFAM: peptidase M4, thermolysin; Fibronectin, type III domain protein; Propeptide, peptidase M4 and M36; Peptidase M4, thermolysin YP_001193240.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001193241.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_001193242.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_001193244.1 PFAM: PSP1 domain protein YP_001193250.1 PFAM: Ankyrin YP_001193251.1 PFAM: Ankyrin YP_001193255.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001193256.1 PFAM: peptidase U32 YP_001193258.1 PFAM: Rhodanese domain protein YP_001193259.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001193260.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_001193261.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_001193264.1 PFAM: helix-turn-helix domain protein YP_001193265.1 PFAM: Fibronectin, type III domain protein YP_001193273.1 PFAM: protein of unknown function DUF955 YP_001193277.1 PFAM: protein of unknown function DUF1094 YP_001193278.1 PFAM: regulatory protein, ArsR YP_001193279.1 PFAM: Lycopene beta and epsilon cyclase YP_001193281.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193282.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001193285.1 TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; UspA domain protein YP_001193286.1 PFAM: iron dependent repressor; FeoA family protein YP_001193289.1 PFAM: Enoyl-CoA hydratase/isomerase YP_001193290.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein YP_001193291.1 PFAM: conserved hypothetical protein 701 YP_001193292.1 PFAM: ferrochelatase YP_001193294.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001193295.1 PFAM: glutamyl-tRNA reductase; oxidoreductase domain protein; Shikimate/quinate 5-dehydrogenase YP_001193297.1 TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_001193298.1 PFAM: Uroporphyrinogen III synthase HEM4 YP_001193299.1 TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_001193302.1 PFAM: GCN5-related N-acetyltransferase YP_001193303.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_001193304.1 PFAM: transposase IS200-family protein YP_001193306.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis YP_001193310.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001193312.1 PFAM: peptidase M13, neprilysin; peptidase M13 YP_001193313.1 PFAM: electron transport protein SCO1/SenC YP_001193314.1 PFAM: FeoA family protein YP_001193315.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein YP_001193319.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_001193320.1 PFAM: fatty acid desaturase, type 2 YP_001193321.1 PFAM: phospholipid/glycerol acyltransferase YP_001193322.1 TIGRFAM: ribonuclease P protein component YP_001193324.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001193325.1 PFAM: OmpA/MotB domain protein YP_001193328.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic YP_001193329.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001193339.1 PFAM: thioesterase superfamily protein YP_001193340.1 TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_001193341.1 PFAM: phospholipid/glycerol acyltransferase YP_001193342.1 TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib YP_001193343.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001193344.1 PFAM: histidine kinase internal region YP_001193345.1 PFAM: acyltransferase 3 YP_001193347.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein YP_001193348.1 PFAM: Sporulation domain protein YP_001193351.1 SMART: AAA ATPase YP_001193352.1 PFAM: outer membrane chaperone Skp (OmpH) YP_001193353.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001193355.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001193356.1 PFAM: protein of unknown function UPF0054 YP_001193358.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001193359.1 PFAM: band 7 protein YP_001193364.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001193366.1 PFAM: dihydroneopterin aldolase YP_001193367.1 PFAM: Lysine exporter protein (LYSE/YGGA) YP_001193369.1 TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein YP_001193371.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_001193372.1 PFAM: protein of unknown function DUF1294 YP_001193373.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold YP_001193374.1 PFAM: glycoside hydrolase, family 8 YP_001193375.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_001193377.1 PFAM: GH3 auxin-responsive promoter YP_001193385.1 PFAM: polysaccharide biosynthesis protein YP_001193387.1 PFAM: glycosyl transferase, group 1 YP_001193388.1 PFAM: glycosyl transferase, group 1 YP_001193389.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain YP_001193390.1 PFAM: glycosyl transferase, group 1 YP_001193391.1 PFAM: UDP-N-acetylglucosamine 2-epimerase YP_001193393.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001193396.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001193398.1 PFAM: glycosyl transferase, family 9 YP_001193400.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein YP_001193402.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001193403.2 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_001193404.1 PFAM: protein of unknown function DUF583 YP_001193407.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit YP_001193408.1 PFAM: H+-transporting two-sector ATPase, C subunit YP_001193409.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001193410.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit YP_001193411.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001193412.1 TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit YP_001193413.1 PFAM: GCN5-related N-acetyltransferase YP_001193414.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein YP_001193415.1 catalyzes the formation of dUMP from dUTP YP_001193416.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase YP_001193417.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001193419.1 PFAM: peptidase M23B YP_001193420.1 PFAM: CBS domain containing protein YP_001193421.1 PFAM: ribosome-binding factor A YP_001193422.1 PFAM: protein of unknown function DUF214 YP_001193423.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein YP_001193426.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS YP_001193428.1 PFAM: peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase YP_001193430.1 PFAM: phospholipid/glycerol acyltransferase YP_001193431.1 PFAM: glycosyl transferase, family 2 YP_001193433.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_001193437.1 PFAM: outer membrane lipoprotein carrier protein LolA YP_001193438.1 PFAM: polysaccharide deacetylase YP_001193440.1 PFAM: beta-ketoacyl synthase YP_001193445.1 PFAM: beta-ketoacyl synthase YP_001193446.1 PFAM: thioesterase superfamily protein YP_001193447.1 PFAM: ABC-2 type transporter YP_001193448.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001193454.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001193456.1 PFAM: lipid A biosynthesis acyltransferase YP_001193458.1 PFAM: beta-ketoacyl synthase YP_001193459.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001193460.1 PFAM: KWG Leptospira repeat protein YP_001193461.1 PFAM: phenylalanine/histidine ammonia-lyase YP_001193462.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase YP_001193464.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_001193465.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_001193466.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein YP_001193467.1 PFAM: Aldose 1-epimerase YP_001193468.1 PFAM: regulatory protein GntR, HTH YP_001193469.1 PFAM: NUDIX hydrolase YP_001193470.1 PFAM: alpha-L-arabinofuranosidase domain protein YP_001193471.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_001193472.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_001193473.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_001193474.1 PFAM: Aldose 1-epimerase YP_001193475.1 PFAM: PKD domain containing protein YP_001193476.1 PFAM: OsmC family protein YP_001193478.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001193479.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001193480.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001193481.1 PFAM: manganese and iron superoxide dismutase YP_001193482.1 PFAM: glutamine amidotransferase, class-II YP_001193483.1 PFAM: PfkB domain protein YP_001193485.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001193487.1 PFAM: ribonuclease H YP_001193488.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein YP_001193489.1 carries the fatty acid chain in fatty acid biosynthesis YP_001193490.1 PFAM: beta-ketoacyl synthase YP_001193491.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein YP_001193493.1 PFAM: pyruvate kinase YP_001193494.1 PFAM: sulfatase YP_001193499.1 SMART: helix-turn-helix- domain containing protein, AraC type YP_001193502.1 PFAM: Abortive infection protein YP_001193503.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001193504.1 PFAM: peptidase C1A, papain; peptidase C1B, bleomycin hydrolase YP_001193507.1 PFAM: helix-turn-helix domain protein YP_001193510.1 PFAM: Excinuclease ABC, C subunit domain protein YP_001193511.1 PFAM: peptidase M50 YP_001193515.1 PFAM: secretion protein HlyD family protein YP_001193516.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase YP_001193517.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase YP_001193518.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain YP_001193519.1 PFAM: major facilitator superfamily MFS_1 YP_001193520.1 PFAM: TonB-dependent receptor YP_001193523.1 PFAM: GTP-binding protein, HSR1-related YP_001193526.1 PFAM: protein of unknown function DUF59 YP_001193527.1 PFAM: Fe-S metabolism associated SufE YP_001193529.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001193530.1 PFAM: beta-lactamase YP_001193531.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein YP_001193532.1 PFAM: S23 ribosomal protein YP_001193533.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_001193534.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase YP_001193535.1 with SufCD activates cysteine desulfurase SufS YP_001193536.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_001193538.1 PFAM: beta-lactamase domain protein YP_001193540.1 PFAM: regulator of chromosome condensation, RCC1; leucine-rich repeat protein YP_001193541.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001193542.1 PFAM: peptidase M1, membrane alanine aminopeptidase YP_001193549.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418 YP_001193550.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418 YP_001193551.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain YP_001193553.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001193559.2 PFAM: Ig domain protein, group 2 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_001193561.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_001193563.1 PFAM: RagB/SusD domain protein YP_001193564.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193565.1 PFAM: FecR protein YP_001193566.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001193568.1 PFAM: protein of unknown function UPF0102 YP_001193569.1 PFAM: peptidase U61, LD-carboxypeptidase A YP_001193570.1 PFAM: beta-lactamase YP_001193572.1 catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde in the final enzymatic step of quinolinate biosynthesis YP_001193575.1 PFAM: cyclic-AMP phosphodiesterase, class-II YP_001193576.1 PFAM: aldehyde dehydrogenase YP_001193580.1 PFAM: LemA family protein YP_001193582.1 PFAM: Pectate lyase/Amb allergen YP_001193583.1 PFAM: protein of unknown function DUF1112 YP_001193584.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001193585.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001193586.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001193587.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L YP_001193588.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_001193589.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001193590.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1 YP_001193591.1 PFAM: ferredoxin YP_001193592.1 TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit YP_001193593.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001193594.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa YP_001193595.1 PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit YP_001193596.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001193597.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_001193598.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_001193599.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001193600.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001193602.1 PFAM: PepSY-associated TM helix domain protein YP_001193603.1 PFAM: PepSY-associated TM helix domain protein YP_001193606.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_001193607.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001193610.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator YP_001193611.1 PFAM: TonB-dependent receptor; Cna B domain protein; TonB-dependent receptor, plug YP_001193612.1 PFAM: major facilitator superfamily MFS_1 YP_001193613.1 PFAM: glycoside hydrolase, family 37 YP_001193614.1 PFAM: Polyprenyl synthetase YP_001193615.1 PFAM: YceI family protein YP_001193616.1 PFAM: regulatory protein, TetR YP_001193617.1 PFAM: outer membrane efflux protein YP_001193618.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001193619.1 PFAM: acriflavin resistance protein YP_001193628.1 PFAM: peptidase S41 YP_001193629.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease YP_001193630.1 PFAM: phospholipid/glycerol acyltransferase YP_001193631.1 TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase YP_001193632.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1 YP_001193633.1 PFAM: regulatory protein, LysR; LysR, substrate-binding YP_001193635.1 PFAM: helix-turn-helix domain protein YP_001193636.1 PFAM: GCN5-related N-acetyltransferase YP_001193637.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001193638.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001193639.1 PFAM: lipolytic enzyme, G-D-S-L family YP_001193641.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain YP_001193642.1 PFAM: helix-turn-helix- domain containing protein, AraC type; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_001193647.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase YP_001193650.1 PFAM: methyltransferase small YP_001193651.1 TIGRFAM: 16S rRNA processing protein RimM YP_001193652.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001193654.1 PFAM: RNP-1 like RNA-binding protein YP_001193655.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001193656.1 PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_001193657.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_001193658.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001193659.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001193660.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR YP_001193661.1 TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease YP_001193663.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain YP_001193664.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller YP_001193665.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193669.1 TIGRFAM: alanine racemase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; alanine racemase domain protein; Mur ligase, middle domain protein YP_001193670.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel YP_001193671.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region YP_001193675.1 PFAM: ferredoxin YP_001193677.1 PFAM: nitrogen-fixing NifU domain protein YP_001193680.1 PFAM: protein of unknown function DUF214 YP_001193681.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001193682.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001193683.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase YP_001193684.1 PFAM: ATP-binding region, ATPase domain protein domain protein YP_001193685.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase YP_001193686.1 PFAM: Lysine exporter protein (LYSE/YGGA) YP_001193687.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001193688.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter YP_001193694.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain YP_001193695.1 PFAM: TPR repeat-containing protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: Tetratricopeptide domain protein YP_001193696.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001193699.1 PFAM: peptidase M1, membrane alanine aminopeptidase YP_001193703.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001193704.1 PFAM: outer membrane efflux protein YP_001193705.1 PFAM: secretion protein HlyD family protein YP_001193706.1 PFAM: major facilitator superfamily MFS_1 YP_001193707.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001193708.1 PFAM: helix-turn-helix domain protein YP_001193711.1 PFAM: peptidase M20; peptidase dimerisation domain protein YP_001193713.1 PFAM: Penicillinase repressor YP_001193714.1 PFAM: peptidase M56, BlaR1 YP_001193715.1 PFAM: Saccharopine dehydrogenase YP_001193716.1 PFAM: protein of unknown function DUF423 YP_001193717.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_001193718.1 PFAM: phytase YP_001193719.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193722.1 PFAM: protein of unknown function DUF419 YP_001193724.1 PFAM: GCN5-related N-acetyltransferase YP_001193727.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001193728.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001193730.1 PFAM: glycosyl transferase, family 2 YP_001193733.1 PFAM: protein of unknown function DUF456 YP_001193735.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001193736.1 PFAM: UbiA prenyltransferase YP_001193740.1 PFAM: GHMP kinase YP_001193741.1 PFAM: TspO/MBR family protein YP_001193742.1 PFAM: beta-lactamase domain protein YP_001193743.1 PFAM: cyclic nucleotide-binding YP_001193746.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001193747.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001193748.1 PFAM: glycerophosphoryl diester phosphodiesterase YP_001193749.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_001193750.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_001193752.1 PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein YP_001193753.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001193754.1 PFAM: major facilitator superfamily MFS_1 YP_001193755.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator YP_001193756.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193757.1 PFAM: RagB/SusD domain protein YP_001193759.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_001193760.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1 YP_001193761.1 PFAM: PKD domain containing protein YP_001193762.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001193764.1 PFAM: protein of unknown function DUF1239 YP_001193765.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region YP_001193766.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase YP_001193769.1 TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative YP_001193770.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein YP_001193771.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1 YP_001193772.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1 YP_001193776.1 PFAM: ComEC/Rec2-related protein YP_001193777.1 PFAM: NLP/P60 protein YP_001193778.1 TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19 YP_001193780.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001193781.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001193782.1 PFAM: DNA/RNA non-specific endonuclease YP_001193783.1 PFAM: ribulose-phosphate 3-epimerase YP_001193784.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2 YP_001193789.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193792.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001193793.1 PFAM: TPR repeat-containing protein; ATP-binding region, ATPase domain protein domain protein; SMART: Tetratricopeptide domain protein YP_001193795.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_001193796.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001193802.1 PFAM: TonB-dependent receptor YP_001193803.1 PFAM: Heavy metal transport/detoxification protein YP_001193805.1 PFAM: cell cycle protein YP_001193806.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_001193808.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001193809.1 functions in MreBCD complex in some organisms YP_001193810.1 involved in de novo purine biosynthesis YP_001193811.1 PFAM: protein of unknown function DUF214 YP_001193813.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_001193814.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_001193815.1 PFAM: surface antigen (D15) YP_001193816.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding YP_001193818.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12 YP_001193819.1 PFAM: dihydrofolate reductase region YP_001193821.1 PFAM: glycoside hydrolase, family 13 domain protein YP_001193822.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001193823.1 PFAM: UvrB/UvrC protein; protein of unknown function DUF151 YP_001193824.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit YP_001193825.1 PFAM: electron transfer flavoprotein beta-subunit YP_001193826.1 PFAM: Transketolase, central region; Transketolase domain protein YP_001193828.1 PFAM: HhH-GPD family protein YP_001193829.1 PFAM: Inorganic pyrophosphatase YP_001193830.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001193833.1 PFAM: deoxynucleoside kinase YP_001193840.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001193841.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193842.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_001193843.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase, NAD-binding YP_001193844.1 PFAM: alpha/beta hydrolase fold YP_001193845.1 TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; homoserine dehydrogenase, NAD-binding YP_001193846.1 PFAM: OsmC family protein YP_001193847.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_001193848.1 PFAM: RDD domain containing protein YP_001193849.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_001193850.1 PFAM: protein of unknown function DUF81 YP_001193851.1 PFAM: protein of unknown function DUF81 YP_001193852.1 TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase YP_001193853.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001193854.1 TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding YP_001193855.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; HEPN domain protein YP_001193856.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001193857.1 TIGRFAM: siroheme synthase YP_001193858.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001193859.1 PFAM: homocysteine S-methyltransferase YP_001193861.1 TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein YP_001193862.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001193863.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001193864.1 PFAM: sodium:dicarboxylate symporter YP_001193865.1 PFAM: Pyridoxal-dependent decarboxylase YP_001193866.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193867.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001193870.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001193871.1 PFAM: regulatory protein, AsnC/Lrp family YP_001193872.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase, HD region YP_001193874.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001193876.1 PFAM: CMP/dCMP deaminase, zinc-binding YP_001193880.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2 YP_001193881.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; Penicillin-binding domain protein YP_001193883.1 TIGRFAM: ribonuclease, Rne/Rng family YP_001193885.1 PFAM: histone family protein DNA-binding protein YP_001193886.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_001193889.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_001193890.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region YP_001193892.1 PFAM: Heavy metal transport/detoxification protein YP_001193893.1 PFAM: protein of unknown function DUF6, transmembrane YP_001193894.1 PFAM: peptidase M16 domain protein YP_001193895.1 PFAM: peptidase M16 domain protein YP_001193896.1 PFAM: ribosomal protein L21 YP_001193897.1 involved in the peptidyltransferase reaction during translation YP_001193899.1 PFAM: AsmA family protein YP_001193900.1 PFAM: tRNA--hydroxylase YP_001193901.1 PFAM: glycosyl transferase, group 1 YP_001193902.1 PFAM: peptidase M1, membrane alanine aminopeptidase YP_001193903.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_001193904.1 PFAM: dehydrogenase, E1 component YP_001193905.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding YP_001193908.2 PFAM: protein of unknown function DUF323 YP_001193909.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein YP_001193910.1 PFAM: regulatory protein, LuxR; Two component regulator propeller; Two component regulator three Y domain protein YP_001193911.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193912.1 PFAM: RagB/SusD domain protein YP_001193913.1 PFAM: glycoside hydrolase, family 30 YP_001193914.1 PFAM: glycoside hydrolase, family 30 YP_001193915.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001193916.1 PFAM: Endonuclease/exonuclease/phosphatase YP_001193917.1 PFAM: glycoside hydrolase, family 30 YP_001193918.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001193921.1 PFAM: NUDIX hydrolase YP_001193923.1 PFAM: 2OG-Fe(II) oxygenase YP_001193926.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase YP_001193927.1 PFAM: small multidrug resistance protein YP_001193930.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001193932.1 PFAM: globin YP_001193934.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp YP_001193935.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer YP_001193936.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_001193939.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001193941.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001193942.1 PFAM: histidine triad (HIT) protein YP_001193943.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001193946.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001193947.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein YP_001193948.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein YP_001193949.1 TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated YP_001193950.1 PFAM: thiazole biosynthesis family protein YP_001193951.1 PFAM: thiamine monophosphate synthase YP_001193952.1 PFAM: Phosphomethylpyrimidine kinase type-1 YP_001193953.1 PFAM: thiamine monophosphate synthase YP_001193954.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001193955.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein YP_001193956.1 TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_001193958.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165 YP_001193959.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F YP_001193960.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts YP_001193961.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001193962.1 forms a direct contact with the tRNA during translation YP_001193963.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001193966.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator YP_001193968.1 TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_001193971.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001193972.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001193974.1 PFAM: metallophosphoesterase YP_001193975.1 PFAM: Thioredoxin domain YP_001193976.1 PFAM: polysaccharide deacetylase YP_001193978.1 PFAM: UspA domain protein YP_001193979.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001193980.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001193981.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001193982.1 PFAM: phosphoesterase, PA-phosphatase related YP_001193984.1 PFAM: Sporulation domain protein YP_001193985.1 PFAM: cytochrome c, class I YP_001193986.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001193987.1 PFAM: Polysulphide reductase, NrfD YP_001193991.1 PFAM: cytochrome C oxidase subunit II, transmembrane region YP_001193992.1 PFAM: cytochrome c oxidase, subunit I YP_001193993.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001193994.1 PFAM: cytochrome P450 YP_001193995.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730 YP_001193996.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Hyalin YP_001193998.1 PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001194000.1 PFAM: helix-turn-helix domain protein YP_001194001.1 PFAM: CBS domain containing protein YP_001194002.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001194003.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001194005.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001194007.1 TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_001194009.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_001194010.1 PFAM: cytochrome c oxidase, subunit III YP_001194011.1 PFAM: cytochrome c oxidase, subunit III YP_001194014.1 PFAM: electron transport protein SCO1/SenC YP_001194015.1 PFAM: protein of unknown function DUF420 YP_001194018.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001194019.1 PFAM: protein of unknown function DUF214 YP_001194020.1 PFAM: protein of unknown function DUF214 YP_001194021.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001194022.1 PFAM: outer membrane efflux protein YP_001194023.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001194024.1 PFAM: peptidase M22, glycoprotease YP_001194025.1 PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein YP_001194027.1 PFAM: nitrogen-fixing NifU domain protein YP_001194030.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001194031.1 PFAM: intradiol ring-cleavage dioxygenase YP_001194032.1 PFAM: histidine kinase internal region YP_001194034.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein YP_001194037.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation YP_001194038.1 TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase YP_001194039.1 PFAM: outer membrane chaperone Skp (OmpH) YP_001194040.1 PFAM: outer membrane chaperone Skp (OmpH) YP_001194041.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein YP_001194042.1 TIGRFAM: UDP diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001194044.1 catalyzes the phosphorylation of NAD to NADP YP_001194045.1 PFAM: CBS domain containing protein YP_001194046.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001194047.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194050.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein YP_001194051.1 PFAM: membrane protein of unknown function YP_001194052.1 PFAM: trigger factor, N-terminal domain YP_001194053.1 PFAM: peptidase S14, ClpP YP_001194054.1 binds and unfolds substrates as part of the ClpXP protease YP_001194056.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001194058.1 PFAM: Activator of Hsp90 ATPase 1 family protein YP_001194059.1 PFAM: Activator of Hsp90 ATPase 1 family protein YP_001194060.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001194062.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase YP_001194063.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3 YP_001194064.1 PFAM: GH3 auxin-responsive promoter YP_001194067.1 PFAM: AsmA family protein YP_001194068.1 PFAM: alpha/beta hydrolase fold YP_001194069.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_001194070.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; deoxynucleoside kinase YP_001194071.1 PFAM: C-type lectin domain protein YP_001194072.1 PFAM: tRNA/rRNA methyltransferase (SpoU) YP_001194073.1 PFAM: protein of unknown function DUF1573 YP_001194074.1 This protein performs the mismatch recognition step during the DNA repair process YP_001194077.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein YP_001194078.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001194079.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain YP_001194080.1 PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250 YP_001194081.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein YP_001194083.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation YP_001194084.1 PFAM: YceI family protein YP_001194085.1 PFAM: protein of unknown function DUF1271 YP_001194086.1 PFAM: Pirin domain protein domain protein YP_001194088.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955 YP_001194089.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_001194090.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase YP_001194091.1 PFAM: cyclic nucleotide-binding YP_001194093.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_001194095.1 PFAM: peptidase U32 YP_001194098.1 PFAM: aminotransferase, class I and II YP_001194099.1 PFAM: fatty acid desaturase YP_001194100.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001194104.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase YP_001194106.1 PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase YP_001194107.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like YP_001194108.1 PFAM: metallophosphoesterase YP_001194109.1 protein associated with Co2+ and Mg2+ efflux YP_001194111.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like YP_001194112.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001194113.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_001194114.1 PFAM: protein of unknown function DUF445 YP_001194115.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001194118.1 PFAM: Peptidoglycan-binding domain 1 protein YP_001194119.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family YP_001194125.1 PFAM: sec-independent translocation protein mttA/Hcf106 YP_001194126.1 PFAM: phosphoesterase, PA-phosphatase related YP_001194127.1 PFAM: O-methyltransferase, family 3 YP_001194133.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein YP_001194135.1 PFAM: Polyprenyl synthetase YP_001194138.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001194141.1 TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein YP_001194142.1 PFAM: regulatory protein, LuxR; response regulator receiver YP_001194143.1 TIGRFAM: NAD+ synthetase; PFAM: NAD+ synthase YP_001194147.1 PFAM: Rhs element Vgr protein YP_001194151.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001194152.1 PFAM: alpha/beta hydrolase fold YP_001194153.1 PFAM: protein of unknown function UPF0040 YP_001194154.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_001194156.1 PFAM: penicillin-binding protein, transpeptidase; PASTA domain containing protein YP_001194157.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001194158.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001194159.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein YP_001194160.1 PFAM: cell cycle protein YP_001194161.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001194162.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001194164.1 PFAM: cell division protein FtsA YP_001194165.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein YP_001194166.1 PFAM: GatB/Yqey domain protein YP_001194168.1 SMART: Pyrrolo-quinoline quinone YP_001194169.1 PFAM: bifunctional deaminase-reductase domain protein YP_001194172.1 TIGRFAM: methyltransferase; PFAM: O-methyltransferase domain protein YP_001194173.1 PFAM: protein of unknown function DUF962 YP_001194185.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001194186.1 PFAM: histidine kinase internal region YP_001194189.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter YP_001194190.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001194191.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001194192.1 PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase YP_001194193.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001194194.1 PFAM: S23 ribosomal protein YP_001194195.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001194196.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit YP_001194199.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase YP_001194201.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001194202.1 TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_001194204.1 PFAM: protein of unknown function DUF323 YP_001194209.1 PFAM: FAD dependent oxidoreductase YP_001194211.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001194213.1 PFAM: diacylglycerol kinase, catalytic region YP_001194216.1 PFAM: leucine-rich repeat protein YP_001194222.1 PFAM: glycosyl transferase, family 39 YP_001194224.1 PFAM: PKD domain containing protein YP_001194226.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194229.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001194230.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001194233.1 PFAM: LemA family protein YP_001194238.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194239.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_001194240.1 PFAM: protein of unknown function DUF477 YP_001194241.1 PFAM: protein of unknown function DUF477 YP_001194242.1 PFAM: LemA family protein YP_001194243.1 PFAM: regulatory protein, MerR YP_001194244.1 PFAM: peptidase M23B YP_001194245.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001194246.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001194249.1 PFAM: glycosyl transferase, family 2 YP_001194251.1 PFAM: surface antigen (D15) YP_001194253.1 phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_001194256.2 PFAM: Ricin B lectin; glycoside hydrolase, family 30 YP_001194257.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_001194259.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001194260.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001194264.1 PFAM: Peptidoglycan-binding LysM; Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2 YP_001194265.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001194268.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001194270.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001194273.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_001194274.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001194275.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194276.1 PFAM: RagB/SusD domain protein YP_001194278.1 PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_001194281.1 PFAM: amino acid permease-associated region YP_001194283.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain YP_001194284.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001194285.1 PFAM: phage integrase; phage integrase domain protein SAM domain protein YP_001194286.1 TIGRFAM: ribosomal subunit interface protein YP_001194287.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001194288.1 TIGRFAM: preprotein translocase, SecE subunit YP_001194289.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein YP_001194290.1 binds directly to 23S ribosomal RNA YP_001194291.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001194292.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001194293.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001194294.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001194295.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001194298.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding YP_001194299.1 converts 1,4-alpha-D-glucans to maltodextrin YP_001194300.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase YP_001194301.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5 YP_001194302.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_001194303.1 Catalyzes the conversion of citrate to isocitrate YP_001194304.1 PFAM: Kelch repeat-containing protein YP_001194305.1 PFAM: NLP/P60 protein; Peptidoglycan-binding LysM YP_001194306.1 PFAM: response regulator receiver YP_001194307.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001194308.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_001194312.1 PFAM: amino acid permease-associated region YP_001194314.1 PFAM: 2OG-Fe(II) oxygenase YP_001194315.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_001194316.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC, C subunit domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_001194317.1 PFAM: UMUC domain protein DNA-repair protein YP_001194318.1 PFAM: peptidase S24, S26A and S26B YP_001194319.1 PFAM: helix-turn-helix domain protein YP_001194320.1 PFAM: phosphoesterase, PA-phosphatase related YP_001194321.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001194322.1 PFAM: Osmosensitive K+ channel His kinase sensor; UspA domain protein YP_001194324.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_001194325.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein YP_001194326.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001194328.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_001194329.1 PFAM: polysaccharide deacetylase YP_001194331.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001194332.1 SMART: helix-turn-helix domain protein YP_001194334.1 PFAM: luciferase YP_001194335.1 TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold YP_001194336.1 PFAM: Hyalin; FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein YP_001194338.1 PFAM: regulatory protein, LuxR; response regulator receiver YP_001194339.1 PFAM: TPR repeat-containing protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001194341.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator YP_001194342.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001194343.1 PFAM: PEBP family protein YP_001194344.1 PFAM: glycoside hydrolase family 67; glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein YP_001194345.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR YP_001194346.1 TIGRFAM: mannonate dehydratase; PFAM: Mannonate dehydratase; Xylose isomerase domain protein TIM barrel YP_001194347.1 PFAM: glycoside hydrolase, family 10 YP_001194348.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1 YP_001194349.1 PFAM: glycoside hydrolase, family 43 YP_001194350.1 PFAM: regulatory protein GntR, HTH YP_001194351.1 PFAM: carbohydrate kinase, FGGY YP_001194352.1 catalyzes the interconversion of D-xylose to D-xylulose YP_001194353.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001194354.1 PFAM: regulatory protein, LysR; LysR, substrate-binding YP_001194355.1 PFAM: beta-lactamase domain protein YP_001194357.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001194358.1 PFAM: FecR protein YP_001194359.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194361.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain YP_001194362.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain YP_001194363.1 PFAM: peptidase M16 domain protein YP_001194364.1 PFAM: cytochrome c biogenesis protein, transmembrane region YP_001194365.1 PFAM: aminotransferase, class V YP_001194366.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR YP_001194369.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein YP_001194370.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194371.1 PFAM: RagB/SusD domain protein YP_001194374.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, sugar binding YP_001194375.2 PFAM: glycoside hydrolase, family 43 YP_001194376.1 PFAM: Aldose 1-epimerase YP_001194377.1 PFAM: glycoside hydrolase, family 43; Glycosyl hydrolase family 32, N terminal domain protein YP_001194378.1 PFAM: coagulation factor 5/8 type domain protein YP_001194379.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: LmbE family protein; glucosamine/galactosamine-6-phosphate isomerase YP_001194380.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001194381.1 PFAM: histidine kinase internal region YP_001194382.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92 YP_001194383.1 PFAM: Na+/solute symporter YP_001194384.1 PFAM: glycosidase, PH1107-related YP_001194387.1 PFAM: peptidase T2, asparaginase 2 YP_001194388.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001194389.1 PFAM: glycoside hydrolase, family 20 YP_001194390.1 PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase) YP_001194391.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92 YP_001194392.1 PFAM: glycoside hydrolase, family 3 domain protein; PA14 domain protein; SMART: PA14-related domain protein YP_001194393.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194395.1 PFAM: glycosyl hydrolase, BNR repeat-containing protein YP_001194396.1 PFAM: protein of unknown function DUF718 YP_001194397.1 PFAM: peptidase M20; peptidase M28 YP_001194398.1 PFAM: helix-turn-helix domain protein YP_001194399.1 PFAM: MscS Mechanosensitive ion channel YP_001194404.1 PFAM: Fibronectin, type III domain protein YP_001194419.1 PFAM: CHAP domain containing protein YP_001194424.1 PFAM: peptidase S24, S26A and S26B YP_001194425.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein YP_001194426.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194427.1 PFAM: RagB/SusD domain protein YP_001194428.1 PFAM: glycoside hydrolase, family 10 YP_001194429.1 PFAM: PKD domain containing protein YP_001194431.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001194432.1 PFAM: response regulator receiver YP_001194434.1 PFAM: TPR repeat-containing protein; ATP-binding region, ATPase domain protein domain protein; SMART: Tetratricopeptide domain protein YP_001194435.1 PFAM: 4'-phosphopantetheinyl transferase YP_001194436.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain YP_001194437.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding YP_001194438.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding YP_001194439.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding YP_001194440.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001194441.1 PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain YP_001194442.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding YP_001194443.1 PFAM: aminotransferase class-III YP_001194444.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding YP_001194445.1 PFAM: beta-lactamase domain protein YP_001194446.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding YP_001194447.1 PFAM: TonB-dependent receptor YP_001194448.1 PFAM: Thioesterase YP_001194450.1 TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_001194451.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding YP_001194452.1 PFAM: alpha/beta hydrolase fold YP_001194454.1 PFAM: beta-lactamase YP_001194455.1 PFAM: thioesterase superfamily protein YP_001194456.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_001194457.1 PFAM: permease YjgP/YjgQ family protein YP_001194459.1 PFAM: cell divisionFtsK/SpoIIIE YP_001194460.1 PFAM: diacylglycerol kinase YP_001194461.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001194463.1 PFAM: Thioredoxin domain YP_001194464.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001194465.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001194466.1 PFAM: GCN5-related N-acetyltransferase YP_001194468.1 PFAM: major facilitator superfamily MFS_1 YP_001194469.1 PFAM: protein of unknown function DUF187 YP_001194470.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001194471.1 PFAM: LemA family protein YP_001194473.1 PFAM: KAP P-loop domain protein YP_001194475.1 PFAM: MscS Mechanosensitive ion channel YP_001194476.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein YP_001194477.1 PFAM: amino acid permease-associated region YP_001194478.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_001194479.1 PFAM: regulatory protein, AsnC/Lrp family YP_001194480.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein YP_001194481.1 PFAM: Lipocalin family protein YP_001194482.1 PFAM: DoxX family protein YP_001194484.1 PFAM: Anthranilate synthase component I and chorismate binding protein YP_001194485.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein YP_001194486.1 PFAM: cytochrome c biogenesis protein, transmembrane region YP_001194487.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter YP_001194488.1 PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding YP_001194490.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_001194491.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001194493.1 PFAM: esterase YP_001194494.1 PFAM: Activator of Hsp90 ATPase 1 family protein YP_001194495.1 PFAM: Activator of Hsp90 ATPase 1 family protein YP_001194496.1 PFAM: regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein YP_001194504.1 PFAM: helix-turn-helix domain protein YP_001194506.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_001194507.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001194508.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase YP_001194509.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001194511.1 PFAM: histidine kinase internal region YP_001194512.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001194513.1 PFAM: protein of unknown function DUF1456 YP_001194514.1 PFAM: aminotransferase, class I and II YP_001194515.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_001194517.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001194518.1 PFAM: alpha/beta hydrolase fold YP_001194520.1 PFAM: plasmid stabilization system YP_001194521.1 PFAM: protein of unknown function DUF890 YP_001194522.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region YP_001194523.1 PFAM: Endoribonuclease L-PSP YP_001194525.1 PFAM: transcription activator, effector binding YP_001194527.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194528.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_001194529.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001194531.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001194533.1 PFAM: transposase IS200-family protein YP_001194534.1 PFAM: NADPH-dependent FMN reductase YP_001194535.1 PFAM: Xylose isomerase domain protein TIM barrel YP_001194536.1 PFAM: Cupin 2, conserved barrel domain protein YP_001194537.1 PFAM: major facilitator superfamily MFS_1 YP_001194538.1 PFAM: peptidylprolyl isomerase, FKBP-type; peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_001194540.1 PFAM: transcription elongation factor GreA/GreB domain protein YP_001194541.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001194542.1 PFAM: alpha/beta hydrolase fold YP_001194543.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein YP_001194544.1 PFAM: protein of unknown function DUF1234 YP_001194545.1 PFAM: Alpha/beta hydrolase fold-3 domain protein YP_001194547.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001194548.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region YP_001194550.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein YP_001194552.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001194553.1 PFAM: protein of unknown function DUF323 YP_001194555.1 PFAM: phosphate-selective porin O and P YP_001194557.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_001194560.1 PFAM: pyruvate carboxyltransferase YP_001194564.1 TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001194567.1 PFAM: NUDIX hydrolase YP_001194568.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001194569.1 PFAM: ferric-uptake regulator YP_001194570.1 TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_001194571.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding YP_001194573.1 PFAM: peptidase S41 YP_001194574.1 PFAM: protein of unknown function DUF58 YP_001194576.1 PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5 YP_001194579.1 PFAM: protein of unknown function DUF95, transmembrane YP_001194580.1 PFAM: RDD domain containing protein YP_001194582.1 PFAM: protein of unknown function UPF0126 YP_001194584.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_001194585.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_001194586.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; short-chain dehydrogenase/reductase SDR YP_001194587.1 PFAM: polysaccharide biosynthesis protein YP_001194588.1 PFAM: glycosyl transferase, family 2 YP_001194589.1 PFAM: WxcM domain protein, C-terminal domain protein YP_001194590.1 PFAM: glycosyl transferase, group 1 YP_001194591.1 PFAM: glycosyl transferase, family 2 YP_001194592.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001194593.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein YP_001194594.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_001194595.1 PFAM: TonB-dependent receptor YP_001194596.1 PFAM: GCN5-related N-acetyltransferase YP_001194598.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_001194599.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_001194600.1 PFAM: peptidase M16 domain protein YP_001194601.1 TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_001194602.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_001194603.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001194608.1 PFAM: peptidase M23B YP_001194612.1 PFAM: prolipoprotein diacylglyceryl transferase YP_001194613.1 PFAM: protein of unknown function DUF37 YP_001194614.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001194615.1 PFAM: S23 ribosomal protein YP_001194616.1 PFAM: GTP cyclohydrolase I YP_001194617.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001194618.1 SMART: PDZ/DHR/GLGF domain protein YP_001194621.1 PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller YP_001194624.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001194625.1 PFAM: amino acid permease-associated region YP_001194626.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194628.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194629.1 PFAM: PepSY-associated TM helix domain protein YP_001194630.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194631.1 PFAM: major facilitator superfamily MFS_1 YP_001194635.1 TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_001194640.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_001194643.1 PFAM: transcription elongation factor GreA/GreB domain protein YP_001194654.1 PFAM: pentapeptide repeat protein YP_001194655.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001194662.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; PAS fold-3 domain protein YP_001194663.1 PFAM: response regulator receiver YP_001194664.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001194665.1 PFAM: CsbD family protein YP_001194666.1 PFAM: Ferritin, Dps family protein YP_001194667.1 PFAM: Thrombospondin type 3 repeat; OmpA/MotB domain protein YP_001194668.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_001194669.1 PFAM: periplasmic binding protein YP_001194670.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001194671.1 PFAM: aldo/keto reductase YP_001194672.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein YP_001194678.1 PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_001194681.1 PFAM: helix-turn-helix domain protein YP_001194686.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001194687.1 PFAM: esterase YP_001194689.1 PFAM: Integral membrane protein TerC YP_001194690.1 PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_001194691.1 PFAM: glutamine synthetase, catalytic region YP_001194692.1 PFAM: Curlin associated repeat protein YP_001194697.1 PFAM: Curli production assembly/transport component CsgG YP_001194698.1 PFAM: Fibronectin, type III domain protein YP_001194699.1 PFAM: AIR synthase related protein domain protein YP_001194701.1 PFAM: GCN5-related N-acetyltransferase YP_001194704.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92 YP_001194706.1 PFAM: peptidase M61 domain protein YP_001194710.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein YP_001194712.1 PFAM: protein of unknown function DUF6, transmembrane YP_001194713.1 PFAM: peptidylprolyl isomerase, FKBP-type; peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_001194714.1 PFAM: peptidylprolyl isomerase, FKBP-type; peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_001194715.1 PFAM: peptidylprolyl isomerase, FKBP-type YP_001194716.1 PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1 YP_001194717.1 PFAM: Cl- channel, voltage-gated family protein YP_001194718.1 PFAM: Endoribonuclease L-PSP YP_001194720.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein YP_001194723.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001194724.1 PFAM: Peptidoglycan-binding LysM YP_001194725.1 PFAM: Peptidoglycan-binding LysM YP_001194726.1 PFAM: OsmC family protein YP_001194727.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: LmbE family protein; glucosamine/galactosamine-6-phosphate isomerase YP_001194729.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001194730.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001194733.1 PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding YP_001194734.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001194735.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001194736.1 PFAM: 2-nitropropane dioxygenase, NPD YP_001194739.1 PFAM: NUDIX hydrolase YP_001194740.1 PFAM: phospholipid/glycerol acyltransferase YP_001194742.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001194745.1 PFAM: plasmid stabilization system YP_001194746.1 TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001194748.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001194749.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_001194750.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001194752.2 PFAM: glycosyl hydrolase, family 88 YP_001194755.1 PFAM: ferredoxin-dependent glutamate synthase YP_001194757.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_001194758.1 PFAM: blue (type 1) copper domain protein YP_001194760.1 PFAM: Hemerythrin HHE cation binding domain protein YP_001194762.1 PFAM: electron transport protein SCO1/SenC YP_001194763.1 PFAM: protein of unknown function DUF323 YP_001194764.1 TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; cytochrome c, class I; multicopper oxidase, type 3 YP_001194765.1 PFAM: aminotransferase, class I and II YP_001194771.1 PFAM: glycosyl transferase, group 1 YP_001194772.1 PFAM: polysaccharide biosynthesis protein YP_001194773.1 PFAM: MscS Mechanosensitive ion channel YP_001194775.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related YP_001194776.1 PFAM: Two component regulator three Y domain protein; SMART: regulatory protein, LuxR YP_001194777.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194778.1 PFAM: RagB/SusD domain protein YP_001194780.1 PFAM: glycoside hydrolase, family 16 YP_001194781.1 PFAM: glycoside hydrolase, family 16 YP_001194782.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001194783.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001194784.1 PFAM: HhH-GPD family protein YP_001194786.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001194788.1 PFAM: beta-lactamase domain protein YP_001194793.1 PFAM: phospholipase/Carboxylesterase YP_001194795.1 PFAM: amidohydrolase YP_001194796.1 TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550 YP_001194798.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001194800.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001194807.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001194808.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001194810.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001194812.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194813.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001194815.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_001194816.1 PFAM: NADPH-dependent FMN reductase YP_001194817.1 SMART: transglutaminase domain protein YP_001194818.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_001194819.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001194821.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001194823.1 PFAM: Di-haem cytochrome c peroxidase YP_001194825.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_001194826.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase YP_001194828.1 PFAM: protein of unknown function DUF1572 YP_001194829.1 PFAM: helix-turn-helix, HxlR type YP_001194830.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001194832.1 PFAM: pentapeptide repeat protein YP_001194833.1 PFAM: plasmid stabilization system YP_001194836.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_001194837.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001194838.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001194840.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001194841.1 PFAM: RNA methylase; THUMP domain protein YP_001194843.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase YP_001194846.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase YP_001194847.1 PFAM: ATP-binding region, ATPase domain protein domain protein YP_001194849.1 PFAM: aldo/keto reductase YP_001194850.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_001194852.1 PFAM: protein of unknown function DUF1003 YP_001194857.1 PFAM: aminotransferase, class V YP_001194858.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain YP_001194859.1 PFAM: glycosyl transferase, group 1 YP_001194861.1 PFAM: glycosyl transferase, family 2 YP_001194863.1 PFAM: glycosyl transferase, group 1 YP_001194865.1 PFAM: glycosyl transferase, family 2 YP_001194866.1 PFAM: glycosyl transferase, family 9 YP_001194867.1 PFAM: glycosyl transferase, family 2 YP_001194868.1 PFAM: polysaccharide deacetylase YP_001194869.1 PFAM: glycosyl transferase, family 2 YP_001194870.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_001194871.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein YP_001194874.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001194875.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_001194876.1 PFAM: isochorismatase hydrolase YP_001194877.1 PFAM: protein of unknown function DUF893, YccS/YhfK YP_001194878.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001194880.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era YP_001194881.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp YP_001194882.1 PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein YP_001194883.1 CcoN/CcoO FixN/FixO YP_001194884.1 PFAM: cytochrome c, class I YP_001194885.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001194888.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001194891.1 PFAM: DoxX family protein YP_001194892.1 PFAM: carboxyl transferase YP_001194893.1 PFAM: regulatory protein, TetR YP_001194897.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YP_001194898.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_001194899.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein YP_001194900.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001194901.1 PFAM: conserved hypothetical protein 103 YP_001194902.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller YP_001194903.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_001194906.1 PFAM: protein of unknown function DUF28 YP_001194907.1 PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001194908.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001194909.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031 YP_001194912.1 PFAM: Pectate lyase/Amb allergen YP_001194913.1 PFAM: cyclic nucleotide-binding YP_001194914.1 PFAM: GCN5-related N-acetyltransferase YP_001194917.1 PFAM: helix-turn-helix domain protein YP_001194919.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001194920.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001194921.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_001194922.1 TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase YP_001194923.1 PFAM: protein of unknown function DUF47 YP_001194924.1 PFAM: phosphate transporter YP_001194928.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; protein of unknown function DUF785; RimK domain protein ATP-grasp YP_001194929.1 PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001194930.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller YP_001194931.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001194932.1 PFAM: OsmC family protein YP_001194935.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein YP_001194936.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001194937.1 PFAM: aminotransferase class-III YP_001194938.1 PFAM: OstA family protein YP_001194939.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_001194941.1 PFAM: manganese and iron superoxide dismutase YP_001194942.1 PFAM: acyl-coA-binding protein, ACBP YP_001194943.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001194944.1 PFAM: phosphatidate cytidylyltransferase YP_001194946.1 TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase YP_001194947.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein YP_001194948.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase YP_001194950.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001194951.1 PFAM: NUDIX hydrolase YP_001194952.1 PFAM: helix-turn-helix domain protein YP_001194954.1 PFAM: glycoside hydrolase, family 19 YP_001194959.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001194961.1 PFAM: PhnA protein-like; SMART: PhnA protein N-terminal, proteobacterial YP_001194962.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001194963.1 PFAM: protein of unknown function DUF421 YP_001194964.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001194965.1 PFAM: PASTA domain containing protein YP_001194966.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001194968.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001194969.1 PFAM: Rhodanese domain protein YP_001194972.1 PFAM: alpha/beta hydrolase fold YP_001194973.1 PFAM: MscS Mechanosensitive ion channel YP_001194974.2 PFAM: Fibronectin, type III domain protein YP_001194976.1 PFAM: sodium/hydrogen exchanger YP_001194977.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001194979.1 PFAM: phage integrase YP_001194981.1 TIGRFAM: DNA binding domain, excisionase family YP_001194982.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein YP_001194983.1 PFAM: Integrase, catalytic region YP_001194984.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_001194986.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_001194987.1 PFAM: glycoside hydrolase family 65, central catalytic YP_001194988.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001194990.1 PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase YP_001194991.1 PFAM: protein of unknown function DUF892 YP_001194995.1 PFAM: response regulator receiver YP_001194998.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001195000.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001195002.1 PFAM: protein of unknown function DUF892 YP_001195009.1 TIGRFAM: YD repeat protein YP_001195013.1 PFAM: phage integrase YP_001195016.1 PFAM: phage integrase YP_001195017.1 PFAM: phage integrase YP_001195019.1 PFAM: helix-turn-helix domain protein YP_001195022.1 PFAM: Insertion element protein; IS1 transposase YP_001195024.1 PFAM: phage Tail Collar domain protein YP_001195025.1 PFAM: phage Tail Collar domain protein YP_001195026.1 PFAM: phage Tail Collar domain protein YP_001195027.1 PFAM: GCN5-related N-acetyltransferase YP_001195029.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11 YP_001195030.1 PFAM: SH3, type 3 domain protein YP_001195032.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001195035.1 PFAM: protein of unknown function DUF262 YP_001195036.1 PFAM: protein of unknown function DUF262 YP_001195037.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like YP_001195039.1 SMART: AAA ATPase YP_001195040.1 PFAM: restriction modification system DNA specificity domain YP_001195042.1 TIGRFAM: DNA binding domain, excisionase family YP_001195046.1 PFAM: phage integrase YP_001195047.1 TIGRFAM: DNA binding domain, excisionase family YP_001195048.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001195049.1 PFAM: UspA domain protein YP_001195050.1 PFAM: DNA mismatch repair protein MutS domain protein YP_001195051.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator YP_001195052.1 PFAM: TonB-dependent receptor, plug YP_001195054.1 PFAM: glycoside hydrolase family 2, sugar binding YP_001195055.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92 YP_001195056.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92 YP_001195057.1 PFAM: uncharacterised conserved protein UCP028846 YP_001195058.1 PFAM: ROK family protein YP_001195059.1 PFAM: DSBA oxidoreductase YP_001195061.1 TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_001195064.1 PFAM: Antibiotic biosynthesis monooxygenase YP_001195065.1 PFAM: protein of unknown function DUF62 YP_001195066.1 PFAM: PhoH family protein YP_001195068.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3 YP_001195069.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001195070.1 PFAM: glycoside hydrolase, family 26 YP_001195071.1 PFAM: Ankyrin YP_001195072.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_001195073.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001195074.1 PFAM: outer membrane efflux protein YP_001195075.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein YP_001195076.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001195077.1 PFAM: peptidase M20; peptidase M42 family protein YP_001195081.1 PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001195083.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein YP_001195084.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_001195086.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_001195087.1 PFAM: glycoside hydrolase, family 31 YP_001195088.1 PFAM: peptidase M48, Ste24p YP_001195089.1 PFAM: major facilitator superfamily MFS_1 YP_001195093.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001195095.1 TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_001195097.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001195098.1 TIGRFAM: nucleoside transporter; PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1 YP_001195103.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001195106.1 PFAM: beta-Ig-H3/fasciclin YP_001195107.1 PFAM: protein of unknown function DUF6, transmembrane YP_001195109.1 PFAM: beta-lactamase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001195110.1 PFAM: peptidase M56, BlaR1 YP_001195111.1 PFAM: Penicillinase repressor YP_001195112.1 PFAM: peptidase M56, BlaR1 YP_001195113.1 PFAM: Penicillinase repressor YP_001195114.1 PFAM: major facilitator superfamily MFS_1 YP_001195115.1 PFAM: protein of unknown function DUF1684 YP_001195116.1 PFAM: TatD-related deoxyribonuclease YP_001195117.1 PFAM: UBA/THIF-type NAD/FAD binding protein YP_001195118.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001195120.1 PFAM: GCN5-related N-acetyltransferase YP_001195122.1 PFAM: thiamine pyrophosphate enzyme TPP binding domain protein YP_001195125.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase YP_001195126.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase YP_001195127.1 PFAM: beta-lactamase domain protein YP_001195128.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001195129.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_001195131.1 PFAM: OmpA/MotB domain protein YP_001195132.1 PFAM: adenylate cyclase YP_001195133.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001195134.1 PFAM: protein of unknown function UPF0061 YP_001195135.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_001195136.1 PFAM: aminotransferase, class V YP_001195137.1 PFAM: amino acid permease-associated region YP_001195141.1 PFAM: peptidase M23B YP_001195142.1 PFAM: Spermine synthase YP_001195143.1 PFAM: phospholipid/glycerol acyltransferase YP_001195144.1 PFAM: bacteriophage CI repressor; SMART: helix-turn-helix domain protein YP_001195145.1 SMART: peptidase M14, carboxypeptidase A YP_001195146.1 PFAM: regulatory protein, AsnC/Lrp family YP_001195149.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001195151.1 PFAM: deoxyhypusine synthase YP_001195152.1 PFAM: Orn/DAP/Arg decarboxylase 2 YP_001195153.1 PFAM: 3-dehydroquinate synthase YP_001195154.1 PFAM: TPR repeat-containing protein; O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001195155.1 PFAM: Proline dehydrogenase YP_001195156.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001195159.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001195162.1 PFAM: helix-turn-helix domain protein YP_001195163.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001195164.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase YP_001195165.1 SMART: helix-turn-helix- domain containing protein, AraC type YP_001195166.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195167.1 PFAM: monooxygenase, FAD-binding YP_001195169.1 PFAM: Activator of Hsp90 ATPase 1 family protein YP_001195170.1 PFAM: regulatory protein, ArsR YP_001195172.1 PFAM: Choloylglycine hydrolase YP_001195177.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001195178.1 PFAM: purine or other phosphorylase, family 1 YP_001195179.1 PFAM: translation initiation factor SUI1 YP_001195180.1 PFAM: 2OG-Fe(II) oxygenase YP_001195181.1 PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein YP_001195182.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein YP_001195183.1 PFAM: cyclic nucleotide-binding YP_001195187.1 PFAM: MscS Mechanosensitive ion channel YP_001195190.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001195191.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001195192.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001195193.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1 YP_001195197.1 PFAM: plasmid stabilization system YP_001195198.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_001195199.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_001195200.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001195201.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein YP_001195202.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein YP_001195203.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001195204.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001195205.1 PFAM: pyruvate carboxyltransferase YP_001195207.1 PFAM: peptidase M1, membrane alanine aminopeptidase YP_001195208.1 PFAM: peptidase M1, membrane alanine aminopeptidase YP_001195211.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis YP_001195212.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001195213.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_001195214.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001195215.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate YP_001195216.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II YP_001195217.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001195218.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001195219.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein YP_001195220.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001195221.1 PFAM: sulfatase YP_001195224.1 PFAM: conserved hypothetical protein 698 YP_001195225.1 PFAM: regulatory protein, LysR; LysR, substrate-binding YP_001195229.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR YP_001195234.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195235.1 PFAM: FecR protein YP_001195236.1 PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001195238.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_001195240.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YP_001195241.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001195242.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001195243.1 catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis YP_001195244.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_001195245.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_001195246.1 PFAM: response regulator receiver; PglZ domain YP_001195247.1 PFAM: protein of unknown function UPF0079 YP_001195249.1 PFAM: alanine dehydrogenase/PNT domain protein YP_001195252.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_001195253.1 PFAM: DNA mismatch repair protein MutS domain protein; SMART: MutS III domain protein YP_001195254.1 PFAM: Excinuclease ABC, C subunit domain protein YP_001195255.1 PFAM: thiol-disulphide oxidoreductase DCC YP_001195256.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001195258.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_001195260.1 PFAM: glycosyl transferase, family 2 YP_001195261.1 PFAM: OmpA/MotB domain protein YP_001195262.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain YP_001195264.1 PFAM: UvrD/REP helicase YP_001195265.1 PFAM: protein of unknown function DUF81 YP_001195267.1 PFAM: Patatin YP_001195268.1 PFAM: peptidase M1, membrane alanine aminopeptidase YP_001195269.1 TIGRFAM: ATP binding protein; PFAM: protein of unknown function DUF71, ATP-binding region YP_001195273.1 PFAM: protein of unknown function DUF1697 YP_001195275.1 catalyzes branch migration in Holliday junction intermediates YP_001195276.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein YP_001195279.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001195280.1 PFAM: acriflavin resistance protein YP_001195281.1 PFAM: outer membrane efflux protein YP_001195282.1 PFAM: protein of unknown function UPF0187 YP_001195283.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195284.1 PFAM: glutathione peroxidase YP_001195285.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_001195289.1 PFAM: regulatory protein, ArsR YP_001195290.1 PFAM: alpha/beta hydrolase fold; Antibiotic biosynthesis monooxygenase YP_001195291.1 PFAM: cytochrome c assembly protein YP_001195293.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family YP_001195294.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_001195295.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001195297.1 PFAM: protein of unknown function UPF0118 YP_001195300.1 PFAM: LVIVD repeat protein YP_001195301.1 PFAM: LmbE family protein YP_001195302.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_001195304.1 PFAM: protein of unknown function DUF1348 YP_001195305.1 PFAM: regulatory protein, TetR YP_001195307.1 PFAM: aldehyde dehydrogenase YP_001195308.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001195309.1 PFAM: Peptidoglycan-binding domain 1 protein YP_001195312.1 PFAM: ATP-binding region, ATPase domain protein domain protein YP_001195313.1 PFAM: regulatory protein, LuxR; response regulator receiver YP_001195314.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001195315.1 PFAM: Resolvase, N-terminal domain; Recombinase YP_001195319.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_001195326.1 PFAM: UBA/THIF-type NAD/FAD binding protein YP_001195327.1 PFAM: regulatory protein, ArsR YP_001195329.1 PFAM: Methyltransferase type 12 YP_001195331.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_001195332.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195334.1 PFAM: phosphoesterase, PA-phosphatase related YP_001195335.1 PFAM: DoxX family protein YP_001195336.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter YP_001195337.1 PFAM: transposase IS116/IS110/IS902 family protein YP_001195342.1 PFAM: TraJ family protein conjugative transposon YP_001195347.1 PFAM: aminotransferase, class V YP_001195351.1 PFAM: phosphoadenosine phosphosulfate reductase YP_001195358.1 PFAM: Relaxase/mobilization nuclease YP_001195360.1 PFAM: protein of unknown function DUF1016 YP_001195361.1 PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_001195365.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195368.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: helix-turn-helix- domain containing protein, AraC type YP_001195372.1 e14 prophage; cell death peptidase; inhibitor of T4 late gene expression; late inhibitor of T4 YP_001195374.1 PFAM: helix-turn-helix domain protein YP_001195375.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195376.1 PFAM: RagB/SusD domain protein YP_001195377.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein YP_001195380.1 SMART: AAA ATPase YP_001195384.1 PFAM: natural resistance-associated macrophage protein YP_001195385.1 PFAM: phosphoesterase, PA-phosphatase related YP_001195386.1 attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria YP_001195387.1 PFAM: protein of unknown function DUF1345 YP_001195388.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001195389.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001195390.1 PFAM: sulfatase YP_001195391.1 PFAM: diacylglycerol kinase, catalytic region YP_001195393.1 PFAM: UBA/THIF-type NAD/FAD binding protein YP_001195396.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_001195397.1 PFAM: single-strand binding protein/Primosomal replication protein n YP_001195402.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein YP_001195408.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001195410.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein YP_001195413.1 PFAM: protein of unknown function DUF305 YP_001195414.1 PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3 YP_001195415.1 PFAM: regulatory protein, ArsR YP_001195416.1 PFAM: GCN5-related N-acetyltransferase YP_001195419.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_001195420.1 PFAM: metallophosphoesterase YP_001195421.1 PFAM: cyclic nucleotide-binding YP_001195423.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2 YP_001195424.1 PFAM: regulatory protein, MarR; regulatory protein, ArsR YP_001195425.1 PFAM: Heavy metal transport/detoxification protein YP_001195428.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195429.1 PFAM: cation efflux protein YP_001195432.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195433.1 PFAM: major facilitator superfamily MFS_1 YP_001195435.1 PFAM: helix-turn-helix, HxlR type YP_001195436.1 PFAM: Enoyl-CoA hydratase/isomerase YP_001195437.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001195438.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12 YP_001195439.1 PFAM: helix-turn-helix, HxlR type YP_001195440.1 PFAM: regulatory protein, TetR YP_001195441.1 PFAM: alpha/beta hydrolase fold YP_001195442.1 PFAM: helix-turn-helix domain protein YP_001195443.1 PFAM: cyclic nucleotide-binding YP_001195445.1 PFAM: glycoside hydrolase, family 43; Glycosyl hydrolase family 32, N terminal domain protein YP_001195447.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001195449.1 PFAM: Carbohydrate-binding, CenC domain protein domain protein; alpha-L-arabinofuranosidase domain protein YP_001195450.1 PFAM: glycoside hydrolase, family 28 YP_001195451.1 PFAM: glycoside hydrolase, family 28 YP_001195452.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_001195454.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001195455.1 PFAM: Protein of unknown function DUF706 YP_001195456.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein YP_001195457.1 PFAM: metallophosphoesterase YP_001195460.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92 YP_001195461.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92 YP_001195462.1 PFAM: RagB/SusD domain protein YP_001195463.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195464.1 PFAM: alpha-N-acetylglucosaminidase YP_001195467.1 PFAM: cyclic nucleotide-binding YP_001195469.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein YP_001195470.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_001195471.1 PFAM: ATP-binding region, ATPase domain protein domain protein YP_001195472.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_001195473.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_001195476.1 PFAM: Catalase domain protein YP_001195477.1 PFAM: protein of unknown function DUF892 YP_001195478.1 PFAM: sulfatase YP_001195479.1 PFAM: sulfatase YP_001195483.1 PFAM: amino acid permease-associated region YP_001195487.1 TIGRFAM: conserved hypothetical phage tail protein YP_001195488.1 TIGRFAM: conserved hypothetical phage tail protein YP_001195491.1 TIGRFAM: Rhs element Vgr protein YP_001195492.1 PFAM: PAAR repeat-containing protein YP_001195493.1 PFAM: GPW/gp25 family protein YP_001195503.1 PFAM: Peptidoglycan-binding domain 1 protein YP_001195504.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_001195506.1 PFAM: nitroreductase YP_001195507.1 PFAM: Pyridoxal-dependent decarboxylase YP_001195508.1 PFAM: IucA/IucC family protein YP_001195510.1 PFAM: IucA/IucC family protein YP_001195511.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_001195513.1 PFAM: AMP-dependent synthetase and ligase YP_001195515.1 PFAM: TonB-dependent receptor; Cna B domain protein; TonB-dependent receptor, plug YP_001195521.1 PFAM: AsmA family protein YP_001195523.1 PFAM: Alkaline phosphatase YP_001195524.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001195525.1 PFAM: virulence factor family protein YP_001195526.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471 YP_001195527.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001195528.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001195529.1 PFAM: cyclic nucleotide-binding YP_001195531.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein YP_001195532.1 PFAM: luciferase YP_001195536.1 PFAM: MscS Mechanosensitive ion channel YP_001195537.1 PFAM: response regulator receiver YP_001195538.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001195539.1 PFAM: Ig domain protein, group 2 domain protein; SMART: Parallel beta-helix repeat YP_001195540.1 PFAM: GCN5-related N-acetyltransferase YP_001195541.1 PFAM: protein of unknown function DUF763 YP_001195545.1 PFAM: monooxygenase, FAD-binding YP_001195546.1 PFAM: peptidase M56, BlaR1 YP_001195547.1 PFAM: Penicillinase repressor YP_001195548.1 PFAM: regulatory protein, TetR YP_001195549.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001195553.1 PFAM: cyclic nucleotide-binding YP_001195554.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001195556.1 PFAM: Rhs element Vgr protein YP_001195562.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_001195563.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_001195564.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001195565.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001195566.1 PFAM: histidine kinase internal region YP_001195567.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001195568.1 PFAM: UspA domain protein YP_001195571.1 PFAM: Abortive infection protein YP_001195573.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001195574.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_001195575.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_001195577.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195578.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_001195579.1 PFAM: phospholipase/Carboxylesterase YP_001195580.1 PFAM: Patatin YP_001195582.1 SMART: leucine-rich repeat-containing protein, typical subtype YP_001195584.1 PFAM: Alkaline phosphatase YP_001195585.1 PFAM: RagB/SusD domain protein YP_001195586.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195587.1 PFAM: FecR protein YP_001195588.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001195595.1 PFAM: Rhs element Vgr protein YP_001195598.1 PFAM: GPW/gp25 family protein YP_001195606.1 PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein YP_001195614.1 PFAM: NLP/P60 protein YP_001195615.1 PFAM: PKD domain containing protein YP_001195616.1 PFAM: ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001195618.1 PFAM: sulfatase YP_001195619.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254 YP_001195623.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195626.1 PFAM: regulatory protein, TetR YP_001195627.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001195628.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001195629.1 PFAM: cyclic nucleotide-binding YP_001195630.1 PFAM: small multidrug resistance protein YP_001195633.1 PFAM: GCN5-related N-acetyltransferase YP_001195634.1 PFAM: regulatory protein, LysR; LysR, substrate-binding YP_001195635.1 PFAM: GCN5-related N-acetyltransferase YP_001195636.1 PFAM: protein of unknown function DUF6, transmembrane YP_001195638.1 PFAM: mRNA capping enzyme; DNA primase, small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase YP_001195639.1 PFAM: Ku domain protein YP_001195641.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195642.1 PFAM: glucose sorbosone dehydrogenase YP_001195643.1 PFAM: DoxX family protein YP_001195644.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001195645.1 PFAM: GCN5-related N-acetyltransferase YP_001195646.1 PFAM: DoxX family protein YP_001195648.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001195650.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195651.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195652.1 PFAM: protein of unknown function DUF81 YP_001195653.1 PFAM: protein of unknown function DUF1634 YP_001195654.1 PFAM: luciferase YP_001195655.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195656.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001195657.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase YP_001195658.1 PFAM: helix-turn-helix, HxlR type YP_001195659.1 PFAM: PKD domain containing protein; Carbohydrate binding family 6; Immunoglobulin I-set domain protein; SMART: Immunoglobulin subtype; cellulose binding, type IV YP_001195660.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001195661.1 PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001195662.1 PFAM: dihydrodipicolinate reductase YP_001195665.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001195666.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195670.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001195671.1 PFAM: FecR protein YP_001195672.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195673.1 PFAM: RagB/SusD domain protein YP_001195675.1 PFAM: Di-haem cytochrome c peroxidase YP_001195676.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001195679.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein YP_001195680.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001195684.1 PFAM: CheB methylesterase YP_001195685.1 PFAM: MCP methyltransferase, CheR-type YP_001195686.1 PFAM: response regulator receiver YP_001195687.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; SMART: histidine kinase, HAMP region domain protein YP_001195688.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001195689.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001195690.1 PFAM: MtN3 and saliva related transmembrane protein YP_001195693.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001195694.1 PFAM: response regulator receiver YP_001195695.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_001195696.1 PFAM: protein of unknown function DUF72 YP_001195697.1 PFAM: Formamidopyrimidine-DNA glycolase YP_001195698.1 PFAM: protein of unknown function DUF892 YP_001195706.1 PFAM: Cupin 2, conserved barrel domain protein YP_001195707.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195708.1 PFAM: regulatory protein, TetR YP_001195709.1 PFAM: thioesterase superfamily protein YP_001195710.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1 YP_001195711.2 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001195713.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195716.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001195717.1 SMART: regulatory protein, ArsR YP_001195718.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase YP_001195719.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001195720.1 PFAM: acyltransferase 3 YP_001195722.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001195725.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001195726.1 PFAM: NUDIX hydrolase YP_001195727.1 PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein YP_001195728.1 PFAM: protein of unknown function DUF6, transmembrane YP_001195729.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II YP_001195730.1 PFAM: protein of unknown function UPF0187 YP_001195732.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein YP_001195733.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001195735.1 PFAM: surface antigen (D15) YP_001195736.1 TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase YP_001195737.1 PFAM: pentapeptide repeat protein YP_001195738.1 PFAM: major facilitator superfamily MFS_1 YP_001195739.1 PFAM: regulatory protein, TetR YP_001195740.1 PFAM: GCN5-related N-acetyltransferase YP_001195741.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate YP_001195742.1 PFAM: tRNA--hydroxylase YP_001195743.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001195744.1 TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_001195746.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_001195748.1 PFAM: OmpA/MotB domain protein YP_001195749.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001195752.1 PFAM: protein of unknown function DUF808 YP_001195755.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001195760.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001195761.1 PFAM: peptidase M20; peptidase dimerisation domain protein YP_001195762.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_001195763.1 PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YP_001195764.1 PFAM: aspartate/glutamate/uridylate kinase YP_001195765.1 TIGRFAM: gamma-glutamyl phosphate reductase YP_001195766.1 PFAM: aminotransferase class-III YP_001195767.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001195768.1 PFAM: argininosuccinate synthase; ExsB family protein YP_001195771.1 PFAM: Aldose 1-epimerase YP_001195772.1 PFAM: GCN5-related N-acetyltransferase YP_001195776.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001195778.1 PFAM: helix-turn-helix domain protein YP_001195779.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001195780.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding YP_001195781.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding YP_001195782.1 PFAM: alanine racemase domain protein YP_001195784.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC, C subunit domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_001195785.1 PFAM: Ion transport protein; Ion transport 2 domain protein YP_001195786.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001195787.1 PFAM: acyl-ACP thioesterase YP_001195789.1 similar to release factor 1 and 2 YP_001195791.1 PFAM: protein of unknown function UPF0027 YP_001195793.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001195794.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001195795.1 TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_001195796.1 PFAM: glycosyl transferase, family 2 YP_001195797.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_001195798.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein YP_001195800.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_001195803.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001195805.1 PFAM: 5'-Nucleotidase domain protein YP_001195806.1 PFAM: metallophosphoesterase YP_001195808.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like YP_001195809.1 PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller YP_001195811.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11 YP_001195813.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001195814.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001195815.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001195816.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001195817.1 TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001195818.1 PFAM: beta-lactamase domain protein YP_001195820.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_001195821.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001195822.1 PFAM: HEAT domain containing protein YP_001195823.1 PFAM: Pirin domain protein domain protein; Pirin domain protein YP_001195824.1 PFAM: OsmC family protein YP_001195825.1 PFAM: GCN5-related N-acetyltransferase YP_001195826.1 PFAM: adenosine/AMP deaminase YP_001195827.1 PFAM: Antibiotic biosynthesis monooxygenase YP_001195828.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001195830.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_001195831.1 PFAM: protein of unknown function DUF1599 YP_001195832.1 PFAM: DoxX family protein YP_001195836.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001195837.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001195840.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001195841.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS YP_001195843.1 PFAM: YhhN family protein YP_001195846.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001195848.1 member of the NlpC/P60 superfamily of peptidases YP_001195851.1 PFAM: peptidase M20; peptidase M28 YP_001195852.1 PFAM: coagulation factor 5/8 type domain protein; Fibronectin, type III domain protein; glycoside hydrolase, family 43 YP_001195853.1 PFAM: glycerophosphoryl diester phosphodiesterase YP_001195854.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001195855.1 PFAM: phospholipase/Carboxylesterase YP_001195857.1 PFAM: RagB/SusD domain protein YP_001195858.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195861.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_001195862.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_001195863.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein YP_001195874.1 PFAM: TraJ family protein conjugative transposon YP_001195884.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001195886.1 PFAM: TPR repeat-containing protein; SMART: helix-turn-helix- domain containing protein, AraC type; Tetratricopeptide domain protein YP_001195889.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001195890.1 PFAM: RagB/SusD domain protein YP_001195891.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein YP_001195896.1 PFAM: Relaxase/mobilization nuclease YP_001195900.1 PFAM: response regulator receiver YP_001195901.1 PFAM: UMUC domain protein DNA-repair protein YP_001195902.1 TIGRFAM: DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein YP_001195903.1 PFAM: protein of unknown function DUF159 YP_001195909.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001195911.1 PFAM: single-strand binding protein/Primosomal replication protein n YP_001195915.1 PFAM: DNA repair protein RadC YP_001195923.1 TIGRFAM: DNA binding domain, excisionase family YP_001195925.1 PFAM: phage integrase YP_001195935.1 SMART: phospholipase D/Transphosphatidylase YP_001195942.1 PFAM: Insertion element protein YP_001195944.1 PFAM: Insertion element protein; IS1 transposase YP_001195949.1 PFAM: phage integrase YP_001195950.1 PFAM: phage integrase YP_001195961.1 PFAM: helix-turn-helix domain protein YP_001195963.1 PFAM: KAP P-loop domain protein YP_001195974.1 PFAM: phage integrase YP_001195975.1 PFAM: phage integrase YP_001195981.1 PFAM: helix-turn-helix domain protein YP_001195987.1 PFAM: Relaxase/mobilization nuclease YP_001195995.1 PFAM: DNA repair protein RadC YP_001196000.1 PFAM: protein kinase; SMART: serine/threonine protein kinase YP_001196003.1 PFAM: phage integrase YP_001196004.1 PFAM: phage integrase YP_001196010.1 PFAM: helix-turn-helix domain protein YP_001196015.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_001196017.1 PFAM: mobilisation protein YP_001196018.1 PFAM: Relaxase/mobilization nuclease YP_001196020.1 PFAM: protein of unknown function DUF87 YP_001196024.1 PFAM: NERD domain protein; DNA topoisomerase, type IA, zn finger domain protein YP_001196026.1 PFAM: Insertion element protein; IS1 transposase YP_001196032.1 PFAM: phage integrase YP_001196033.1 PFAM: phage integrase YP_001196036.1 PFAM: phage integrase YP_001196042.1 PFAM: phage integrase YP_001196043.1 PFAM: phage integrase YP_001196046.1 PFAM: Relaxase/mobilization nuclease YP_001196053.1 PFAM: helix-turn-helix domain protein YP_001196060.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein YP_001196062.1 PFAM: YD repeat-containing protein YP_001196063.1 TIGRFAM: YD repeat protein YP_001196065.1 PFAM: cyclic nucleotide-binding YP_001196066.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase YP_001196067.1 PFAM: Endoribonuclease L-PSP YP_001196068.1 PFAM: alpha/beta hydrolase fold YP_001196069.1 PFAM: Cupin 2, conserved barrel domain protein YP_001196070.1 PFAM: amidohydrolase; Amidohydrolase 3 YP_001196071.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196072.1 PFAM: response regulator receiver YP_001196073.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility C-terminal domain YP_001196074.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196076.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein YP_001196077.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196078.1 PFAM: protein of unknown function DUF1486 YP_001196079.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196080.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196081.1 SMART: helix-turn-helix- domain containing protein, AraC type YP_001196083.1 PFAM: heat shock protein Hsp20 YP_001196084.1 PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase YP_001196088.1 PFAM: ApbE family lipoprotein YP_001196091.1 PFAM: Relaxase/mobilization nuclease YP_001196094.1 PFAM: KWG Leptospira repeat protein YP_001196095.1 PFAM: DNA repair protein RadC YP_001196097.1 PFAM: response regulator receiver YP_001196098.1 PFAM: UMUC domain protein DNA-repair protein YP_001196099.1 TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein YP_001196103.1 PFAM: UvrD/REP helicase YP_001196105.1 PFAM: Exonuclease VII, large subunit YP_001196108.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein YP_001196109.1 PFAM: transposase IS3/IS911 family protein YP_001196112.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196115.1 PFAM: cyclase/dehydrase YP_001196116.1 PFAM: Mg2+ transporter protein, CorA family protein YP_001196117.1 PFAM: response regulator receiver YP_001196118.1 PFAM: response regulator receiver YP_001196119.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001196121.1 PFAM: esterase YP_001196123.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001196124.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR YP_001196125.1 PFAM: Phytanoyl-CoA dioxygenase YP_001196131.1 PFAM: RagB/SusD domain protein YP_001196132.1 PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug YP_001196133.1 PFAM: FecR protein YP_001196134.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001196136.1 PFAM: FAD dependent oxidoreductase YP_001196137.1 PFAM: Methyltransferase type 12 YP_001196138.1 PFAM: chalcone and stilbene synthase domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein YP_001196139.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_001196140.1 PFAM: beta-ketoacyl synthase YP_001196143.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein YP_001196144.1 PFAM: cyclic nucleotide-binding YP_001196146.1 PFAM: helix-turn-helix, HxlR type YP_001196147.1 PFAM: beta-lactamase YP_001196149.1 PFAM: response regulator receiver YP_001196150.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein YP_001196151.1 PFAM: response regulator receiver YP_001196152.1 PFAM: response regulator receiver YP_001196153.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_001196155.1 PFAM: response regulator receiver YP_001196156.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001196157.1 PFAM: cyclic nucleotide-binding YP_001196158.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196160.1 PFAM: sodium/hydrogen exchanger YP_001196163.1 PFAM: protein of unknown function DUF323 YP_001196165.1 PFAM: amine oxidase YP_001196166.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein YP_001196167.1 PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, ArsR YP_001196169.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate YP_001196172.1 PFAM: major facilitator superfamily MFS_1 YP_001196173.1 PFAM: peptidase S41 YP_001196174.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196175.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein YP_001196176.1 PFAM: helix-turn-helix, HxlR type YP_001196177.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR YP_001196178.1 PFAM: helix-turn-helix, HxlR type YP_001196179.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196181.1 PFAM: Polyphosphate kinase YP_001196183.1 PFAM: peptidase S41 YP_001196187.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196188.1 PFAM: FecR protein YP_001196189.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001196190.1 PFAM: sodium/calcium exchanger membrane region YP_001196191.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001196192.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein YP_001196193.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196194.1 PFAM: RagB/SusD domain protein YP_001196196.1 PFAM: glycoside hydrolase, family 10; Fibronectin, type III domain protein YP_001196197.1 PFAM: glycoside hydrolase, family 16 YP_001196198.1 PFAM: glycoside hydrolase, family 8 YP_001196199.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1 YP_001196200.1 PFAM: RagB/SusD domain protein YP_001196201.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196202.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein YP_001196204.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001196205.1 PFAM: glycoside hydrolase, family 43 YP_001196206.1 PFAM: protein of unknown function DUF1680 YP_001196208.1 PFAM: esterase; protein of unknown function DUF303, acetylesterase YP_001196209.1 PFAM: lipolytic enzyme, G-D-S-L family YP_001196210.1 PFAM: glycoside hydrolase, family 43 YP_001196211.1 PFAM: RagB/SusD domain protein YP_001196212.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196213.1 PFAM: glycoside hydrolase, family 3 domain protein; PA14 domain protein; SMART: PA14-related domain protein YP_001196214.1 PFAM: response regulator receiver YP_001196217.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196219.1 PFAM: LytTr DNA-binding region YP_001196222.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196223.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196225.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196226.1 PFAM: tRNA/rRNA methyltransferase (SpoU) YP_001196227.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_001196231.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196232.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_001196233.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC) YP_001196234.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K YP_001196235.1 PFAM: hydrogenase expression/synthesis, HypA YP_001196236.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein YP_001196237.1 PFAM: nickel-dependent hydrogenase, large subunit YP_001196238.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561 YP_001196239.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein YP_001196240.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein YP_001196241.1 PFAM: peptidylprolyl isomerase, FKBP-type YP_001196242.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein YP_001196243.1 PFAM: high-affinity nickel-transporter YP_001196245.1 PFAM: MgtC/SapB transporter YP_001196246.1 PFAM: polysaccharide deacetylase YP_001196247.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001196248.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein YP_001196250.1 PFAM: glycosyl transferase, family 2 YP_001196253.1 PFAM: response regulator receiver YP_001196254.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001196255.1 PFAM: protein of unknown function UPF0187 YP_001196260.1 PFAM: Rhs element Vgr protein YP_001196261.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001196262.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; outer membrane efflux protein YP_001196264.1 PFAM: Phytanoyl-CoA dioxygenase YP_001196265.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein YP_001196266.1 PFAM: Haem oxygenase YP_001196268.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001196270.1 PFAM: peptidase M16 domain protein YP_001196271.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein YP_001196272.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain YP_001196274.1 PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug YP_001196275.1 PFAM: FecR protein YP_001196276.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001196279.1 PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller YP_001196281.1 TIGRFAM: conserved repeat domain; outer membrane adhesin like proteiin; PFAM: protein of unknown function DUF11 YP_001196283.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196284.1 PFAM: cyclic nucleotide-binding YP_001196285.1 PFAM: Endoribonuclease L-PSP YP_001196286.1 PFAM: helix-turn-helix, HxlR type YP_001196287.1 PFAM: NAD-dependent epimerase/dehydratase; TrkA-N domain protein; NmrA family protein YP_001196289.1 PFAM: secretion protein HlyD family protein YP_001196290.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001196292.1 PFAM: DoxX family protein YP_001196294.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1 YP_001196295.1 PFAM: Glycosyl hydrolase family 32, N terminal domain protein YP_001196296.1 TIGRFAM: Sucrose-phosphate phosphatase subfamily; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase, group 1; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3 YP_001196297.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001196298.1 PFAM: histidine kinase internal region YP_001196299.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196300.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11 YP_001196302.1 PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller YP_001196303.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_001196305.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001196306.1 PFAM: histidine kinase internal region YP_001196313.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein YP_001196314.1 part of the MetNIQ methionine uptake system YP_001196315.1 part of the metNIQ transport system for methionine YP_001196316.1 PFAM: Cupin 2, conserved barrel domain protein YP_001196317.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001196318.1 PFAM: helix-turn-helix, HxlR type YP_001196319.1 PFAM: aminotransferase, class V YP_001196320.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001196321.1 PFAM: 2-nitropropane dioxygenase, NPD YP_001196323.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196324.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase YP_001196326.1 PFAM: cyclic nucleotide-binding YP_001196328.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR YP_001196329.1 SMART: helix-turn-helix- domain containing protein, AraC type YP_001196330.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001196331.1 PFAM: histidine kinase internal region YP_001196332.1 PFAM: protein of unknown function DUF1223 YP_001196333.1 PFAM: OsmC family protein YP_001196334.1 PFAM: alpha/beta hydrolase fold YP_001196335.1 PFAM: Cupin 2, conserved barrel domain protein YP_001196336.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001196337.1 acts as a promotor non-specific transcription repressor YP_001196338.1 PFAM: KaiB domain protein YP_001196339.1 PFAM: KaiB domain protein YP_001196340.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein YP_001196341.1 PFAM: response regulator receiver YP_001196344.1 PFAM: Rhs element Vgr protein YP_001196355.1 PFAM: OsmC family protein YP_001196357.1 PFAM: regulatory protein, LysR; LysR, substrate-binding YP_001196358.1 PFAM: Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein YP_001196359.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196361.1 PFAM: regulatory protein, MarR YP_001196362.1 PFAM: GCN5-related N-acetyltransferase YP_001196363.1 PFAM: helix-turn-helix, HxlR type YP_001196364.1 PFAM: GCN5-related N-acetyltransferase YP_001196365.1 PFAM: protein of unknown function DUF6, transmembrane YP_001196366.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196367.1 PFAM: PepSY-associated TM helix domain protein YP_001196369.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator YP_001196370.1 PFAM: PfkB domain protein YP_001196371.1 TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1 YP_001196372.1 PFAM: Xylose isomerase domain protein TIM barrel YP_001196373.1 PFAM: phage Tail Collar domain protein YP_001196374.1 PFAM: phage Tail Collar domain protein YP_001196375.1 PFAM: phage Tail Collar domain protein YP_001196377.1 PFAM: formyl transferase domain protein YP_001196378.1 SMART: PKD domain containing protein; Immunoglobulin subtype YP_001196380.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp YP_001196382.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_001196383.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_001196384.1 PFAM: Hemerythrin HHE cation binding domain protein YP_001196385.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001196387.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_001196389.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger YP_001196390.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001196391.1 PFAM: cyclic nucleotide-binding YP_001196392.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001196393.1 PFAM: ribonucleotide reductase YP_001196394.1 PFAM: Ankyrin YP_001196396.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein YP_001196397.1 PFAM: ApbE family lipoprotein YP_001196398.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196401.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001196402.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001196404.1 PFAM: Xylose isomerase domain protein TIM barrel YP_001196405.1 PFAM: glycosyl hydrolase, BNR repeat-containing protein YP_001196407.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase N-terminal domain protein YP_001196412.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase N-terminal domain protein YP_001196415.1 PFAM: glycoside hydrolase, family 28; SMART: Parallel beta-helix repeat YP_001196421.1 PFAM: RagB/SusD domain protein YP_001196422.1 PFAM: TonB-dependent receptor, plug YP_001196423.2 PFAM: Pectinesterase YP_001196424.1 PFAM: protein of unknown function DUF1680 YP_001196427.1 PFAM: protein of unknown function DUF303, acetylesterase YP_001196428.1 PFAM: glycoside hydrolase family 2, sugar binding YP_001196429.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001196432.1 PFAM: alpha-L-rhamnosidase YP_001196433.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein YP_001196434.1 PFAM: major facilitator superfamily MFS_1 YP_001196435.1 PFAM: phosphatidylserine decarboxylase-related YP_001196436.1 PFAM: helix-turn-helix domain protein; bacteriophage CI repressor YP_001196439.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_001196440.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding YP_001196442.1 PFAM: glycoside hydrolase, family 28 YP_001196443.1 TIGRFAM: pectate lyase YP_001196444.1 PFAM: amidohydrolase 2 YP_001196445.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196446.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001196447.1 PFAM: fumarylacetoacetate (FAA) hydrolase YP_001196448.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001196450.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F YP_001196451.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F YP_001196452.1 PFAM: extracellular solute-binding protein, family 1 YP_001196453.1 PFAM: oxidoreductase domain protein YP_001196454.1 PFAM: MaoC domain protein dehydratase YP_001196455.1 TIGRFAM: L-fucose transporter; glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1 YP_001196457.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_001196458.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_001196459.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001196460.1 PFAM: histidine kinase internal region YP_001196461.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001196463.1 PFAM: glycosidase, PH1107-related YP_001196464.1 PFAM: dienelactone hydrolase YP_001196465.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II YP_001196466.1 PFAM: regulatory protein, MarR YP_001196469.1 PFAM: alanine racemase domain protein YP_001196470.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_001196471.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001196472.1 PFAM: Redoxin domain protein; Thioredoxin domain YP_001196478.1 PFAM: transposase IS200-family protein YP_001196485.1 PFAM: helix-turn-helix, HxlR type YP_001196489.1 PFAM: CinA domain protein YP_001196494.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001196496.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196497.1 PFAM: FecR protein YP_001196498.1 PFAM: regulatory protein, LuxR; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001196500.1 PFAM: metallophosphoesterase YP_001196501.1 PFAM: Ricin B lectin; Carbohydrate binding family 6; peptidase domain protein; SMART: beta and gamma crystallin; cellulose binding, type IV YP_001196502.1 PFAM: glycoside hydrolase, family 18; Carbohydrate binding family 6; SMART: cellulose binding, type IV; chitinase II YP_001196503.1 PFAM: Ricin B lectin; Carbohydrate binding family 6; SMART: beta and gamma crystallin; cellulose binding, type IV YP_001196504.2 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase, family 16 YP_001196505.1 PFAM: Two component regulator propeller; Two component regulator three Y domain protein; SMART: regulatory protein, LuxR YP_001196506.1 PFAM: alpha/beta hydrolase fold YP_001196508.1 PFAM: phospholipase/Carboxylesterase YP_001196510.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001196511.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001196512.1 PFAM: NUDIX hydrolase YP_001196515.1 SMART: regulatory protein, LacI YP_001196516.1 PFAM: conserved hypothetical protein 22 YP_001196517.1 Converts D-mannonate to D-mannuronate YP_001196518.1 TIGRFAM: mannonate dehydratase; PFAM: Mannonate dehydratase YP_001196520.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein YP_001196521.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196522.1 PFAM: RagB/SusD domain protein YP_001196523.1 PFAM: glycosyl hydrolase, family 88 YP_001196524.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001196525.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001196527.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_001196528.1 PFAM: molybdopterin dehydrogenase, FAD-binding YP_001196529.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein YP_001196530.1 PFAM: aminotransferase, class V YP_001196532.1 PFAM: protein of unknown function DUF182 YP_001196534.1 PFAM: protein of unknown function DUF1508 YP_001196535.1 PFAM: helix-turn-helix domain protein YP_001196537.1 PFAM: protein of unknown function DUF162 YP_001196538.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001196539.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein YP_001196540.1 PFAM: carbohydrate kinase, FGGY YP_001196541.1 PFAM: Xylose isomerase domain protein TIM barrel YP_001196542.1 TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR YP_001196543.1 transports L-rhamnose and L-lyxose into the cell YP_001196544.1 PFAM: regulatory protein GntR, HTH YP_001196545.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254 YP_001196546.1 PFAM: beta-lactamase YP_001196547.1 PFAM: regulatory protein, LuxR YP_001196548.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196549.1 PFAM: FG-GAP repeat protein YP_001196552.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding YP_001196553.1 PFAM: lipolytic enzyme, G-D-S-L family YP_001196555.1 PFAM: glycoside hydrolase, family 28 YP_001196557.1 TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718 YP_001196559.1 PFAM: protein of unknown function DUF303, acetylesterase YP_001196560.1 PFAM: RagB/SusD domain protein YP_001196561.1 PFAM: TonB-dependent receptor, plug YP_001196562.1 PFAM: glycoside hydrolase family 2, sugar binding YP_001196563.1 PFAM: glycosyl hydrolase, family 88 YP_001196566.1 PFAM: regulatory protein, ArsR YP_001196567.1 PFAM: Patatin YP_001196570.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001196571.1 PFAM: aldehyde dehydrogenase YP_001196573.1 PFAM: lipolytic enzyme, G-D-S-L family YP_001196574.1 PFAM: glycoside hydrolase, family 28 YP_001196575.1 TIGRFAM: pectate lyase; PFAM: Pectinesterase YP_001196576.1 PFAM: glycoside hydrolase, family 43 YP_001196577.1 PFAM: glycosyl hydrolase, family 88 YP_001196578.1 PFAM: glycosyl hydrolase, family 88 YP_001196579.1 PFAM: glycosyl hydrolase, family 88 YP_001196581.1 PFAM: RagB/SusD domain protein YP_001196582.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196583.1 PFAM: glycoside hydrolase, family 28 YP_001196584.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator YP_001196585.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain YP_001196586.1 catalyzes the formation of D-tagaturonate from D-altronate YP_001196587.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_001196588.1 PFAM: PfkB domain protein YP_001196589.1 PFAM: Glucuronate isomerase YP_001196590.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_001196591.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate YP_001196592.1 PFAM: major facilitator superfamily MFS_1 YP_001196594.1 PFAM: PepSY-associated TM helix domain protein YP_001196596.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196597.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196600.1 PFAM: isochorismatase hydrolase YP_001196601.1 PFAM: Amidohydrolase 3 YP_001196603.1 PFAM: 2',5' RNA ligase YP_001196605.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196606.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196607.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196609.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001196610.1 PFAM: histidine kinase internal region YP_001196612.1 PFAM: acriflavin resistance protein YP_001196613.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001196617.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein YP_001196618.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001196619.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein YP_001196620.1 PFAM: outer membrane efflux protein YP_001196621.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001196622.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_001196624.1 PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein YP_001196625.1 PFAM: regulatory protein, TetR YP_001196626.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001196627.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_001196628.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_001196630.1 PFAM: cyclic nucleotide-binding YP_001196631.1 PFAM: GCN5-related N-acetyltransferase YP_001196634.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001196637.1 PFAM: protein of unknown function DUF1328 YP_001196638.1 PFAM: glycosidase, PH1107-related YP_001196639.1 PFAM: glycosyl transferase, group 1 YP_001196640.1 PFAM: beta-ketoacyl synthase; regulatory protein, TetR YP_001196641.1 PFAM: protein of unknown function DUF140 YP_001196642.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001196643.1 PFAM: Mammalian cell entry related domain protein YP_001196644.1 PFAM: AsmA family protein YP_001196645.1 PFAM: protein of unknown function DUF1452 YP_001196646.1 PFAM: FAD dependent oxidoreductase YP_001196647.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR YP_001196648.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196655.1 PFAM: RagB/SusD domain protein YP_001196656.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196661.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region YP_001196662.1 PFAM: protein of unknown function DUF6, transmembrane YP_001196669.1 PFAM: heat shock protein DnaJ domain protein YP_001196671.1 PFAM: phage integrase YP_001196679.1 PFAM: TraJ family protein conjugative transposon YP_001196688.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196690.1 PFAM: helix-turn-helix- domain containing protein, AraC type; SMART: Tetratricopeptide domain protein YP_001196698.1 PFAM: helix-turn-helix domain protein YP_001196699.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196700.1 PFAM: RagB/SusD domain protein YP_001196701.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein YP_001196706.1 PFAM: Relaxase/mobilization nuclease YP_001196709.1 PFAM: single-strand binding protein/Primosomal replication protein n YP_001196713.1 PFAM: DNA repair protein RadC YP_001196719.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase YP_001196720.1 PFAM: restriction modification system DNA specificity domain YP_001196722.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like YP_001196725.1 PFAM: ATP-binding region, ATPase domain protein domain protein YP_001196727.1 PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein YP_001196728.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase YP_001196729.1 PFAM: Ubiquitin system component Cue; conserved hypothetical protein 341 YP_001196730.1 PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger YP_001196732.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001196733.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_001196734.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_001196735.1 PFAM: short-chain dehydrogenase/reductase SDR YP_001196736.1 SMART: helix-turn-helix- domain containing protein, AraC type YP_001196737.1 PFAM: sodium/hydrogen exchanger YP_001196738.1 PFAM: heat shock protein Hsp20 YP_001196739.1 PFAM: KWG Leptospira repeat protein YP_001196740.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter YP_001196741.1 PFAM: regulatory protein, ArsR YP_001196742.1 PFAM: GCN5-related N-acetyltransferase YP_001196745.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_001196746.1 PFAM: metallophosphoesterase YP_001196747.1 PFAM: cyclic nucleotide-binding YP_001196749.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2 YP_001196750.1 PFAM: transposase IS3/IS911 family protein; CENP-B, N-terminal DNA-binding YP_001196751.1 PFAM: glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein YP_001196753.1 PFAM: glycoside hydrolase, family 31 YP_001196756.1 PFAM: RagB/SusD domain protein YP_001196757.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196759.1 PFAM: Ricin B lectin YP_001196761.1 SMART: helix-turn-helix- domain containing protein, AraC type YP_001196763.1 PFAM: NAD-dependent epimerase/dehydratase YP_001196764.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196765.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001196767.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR YP_001196769.1 PFAM: protein of unknown function DUF1275 YP_001196770.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp YP_001196772.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein YP_001196773.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001196774.1 PFAM: glycine cleavage H-protein YP_001196778.1 PFAM: PhnA protein-like; SMART: PhnA protein N-terminal, proteobacterial YP_001196781.1 PFAM: peptidase U61, LD-carboxypeptidase A YP_001196782.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; outer membrane efflux protein YP_001196783.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001196784.1 PFAM: diacylglycerol kinase YP_001196785.1 PFAM: sulfatase YP_001196787.1 PFAM: ApbE family lipoprotein YP_001196789.1 PFAM: phosphoesterase, PA-phosphatase related YP_001196790.1 PFAM: cytochrome B561 YP_001196791.1 PFAM: protein of unknown function DUF125, transmembrane YP_001196792.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_001196794.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein YP_001196795.1 PFAM: helicase domain protein YP_001196799.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001196800.1 PFAM: protein of unknown function DUF1349 YP_001196801.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_001196802.1 PFAM: protein of unknown function DUF190 YP_001196803.1 TIGRFAM: efflux transporter, RND family, MFP subunit YP_001196804.1 PFAM: outer membrane efflux protein YP_001196806.1 PFAM: nitroreductase YP_001196809.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196811.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196813.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001196818.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196819.1 PFAM: protein of unknown function DUF541 YP_001196820.1 PFAM: Rhomboid family protein YP_001196821.1 PFAM: lipid A biosynthesis acyltransferase YP_001196822.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III YP_001196823.1 PFAM: protein of unknown function DUF479 YP_001196824.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_001196825.1 PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein YP_001196826.1 PFAM: filamentation induced by cAMP protein Fic YP_001196827.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related YP_001196828.1 PFAM: conserved hypothetical protein 730 YP_001196830.1 PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein YP_001196831.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_001196832.1 PFAM: Pyrrolo-quinoline quinone YP_001196835.1 PFAM: conserved hypothetical protein 95 YP_001196836.1 PFAM: TonB-dependent receptor YP_001196838.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001196839.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001196841.1 PFAM: sodium:dicarboxylate symporter YP_001196843.1 PFAM: plasmid stabilization system YP_001196844.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156 YP_001196845.1 PFAM: Peptidoglycan-binding LysM YP_001196846.1 PFAM: transport-associated YP_001196848.1 TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; DNA polymerase III, delta; SMART: AAA ATPase YP_001196850.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase YP_001196851.1 PFAM: cyclic nucleotide-binding YP_001196852.1 PFAM: Ppx/GppA phosphatase YP_001196853.1 PFAM: Polyphosphate kinase YP_001196854.1 PFAM: Phosphoglycerate mutase YP_001196856.1 PFAM: von Willebrand factor, type A YP_001196858.1 PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller YP_001196859.1 PFAM: Allergen V5/Tpx-1 family protein YP_001196860.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_001196861.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001196863.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001196865.1 PFAM: phosphoribosyltransferase YP_001196868.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001196869.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001196870.1 PFAM: helix-turn-helix domain protein YP_001196873.1 PFAM: glycoside hydrolase, family 18; Cna B domain protein; SMART: chitinase II YP_001196874.1 PFAM: glycoside hydrolase, family 20 YP_001196875.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: LmbE family protein; glucosamine/galactosamine-6-phosphate isomerase YP_001196877.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196878.1 PFAM: glycoside hydrolase, family 18; SMART: chitinase II YP_001196880.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196881.1 PFAM: histidine kinase internal region YP_001196882.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001196883.1 PFAM: major facilitator superfamily MFS_1 YP_001196885.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001196886.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR YP_001196887.1 PFAM: glutamine cyclotransferase YP_001196888.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_001196890.1 PFAM: Arginase/agmatinase/formiminoglutamase YP_001196891.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001196892.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001196893.1 PFAM: sodium:dicarboxylate symporter YP_001196894.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001196895.1 PFAM: metallophosphoesterase YP_001196898.1 PFAM: glycosyl transferase, group 1 YP_001196900.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein YP_001196902.1 PFAM: Mammalian cell entry related domain protein YP_001196903.1 PFAM: cell wall hydrolase/autolysin YP_001196905.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP YP_001196906.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_001196908.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001196909.1 TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_001196911.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001196912.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001196914.1 PFAM: tRNA/rRNA methyltransferase (SpoU) YP_001196916.1 PFAM: protein of unknown function UPF0118 YP_001196919.1 PFAM: peptidase M15D, vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin YP_001196920.1 PFAM: peptidase S15 YP_001196921.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20 YP_001196922.1 PFAM: fatty acid desaturase YP_001196924.1 PFAM: alpha/beta hydrolase fold YP_001196927.1 PFAM: GCN5-related N-acetyltransferase YP_001196928.1 PFAM: major facilitator superfamily MFS_1 YP_001196929.1 PFAM: alpha/beta hydrolase fold YP_001196930.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein YP_001196931.1 PFAM: NLP/P60 protein YP_001196933.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001196934.1 PFAM: aldo/keto reductase YP_001196935.1 PFAM: NAD(P)H dehydrogenase (quinone) YP_001196938.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001196939.1 PFAM: regulatory protein, LysR; LysR, substrate-binding YP_001196941.1 PFAM: protein of unknown function DUF306, Meta and HslJ YP_001196942.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein YP_001196943.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein YP_001196945.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region YP_001196946.1 PFAM: regulatory protein, LuxR; response regulator receiver YP_001196947.1 PFAM: major facilitator superfamily MFS_1 YP_001196949.1 PFAM: Methyltransferase type 11 YP_001196950.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp YP_001196951.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein YP_001196952.1 PFAM: Rubredoxin-type Fe(Cys)4 protein YP_001196954.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001196955.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001196956.1 PFAM: molybdopterin biosynthesis MoaE protein YP_001196957.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; SMART: Rhodanese domain protein YP_001196958.1 PFAM: thiamineS protein YP_001196959.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001196961.1 PFAM: protein of unknown function DUF81 YP_001196962.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV YP_001196963.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196964.1 PFAM: RagB/SusD domain protein YP_001196965.1 PFAM: sulfatase YP_001196967.1 PFAM: Rhodanese domain protein; Thioredoxin domain YP_001196968.1 PFAM: sulfatase YP_001196969.1 PFAM: conserved hypothetical protein 698 YP_001196970.1 PFAM: sulfatase YP_001196971.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_001196973.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001196975.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III YP_001196976.1 PFAM: regulatory protein, AsnC/Lrp family YP_001196977.1 PFAM: dienelactone hydrolase YP_001196979.1 PFAM: peptidase M20; peptidase M28 YP_001196980.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001196982.1 PFAM: regulatory protein, LuxR; response regulator receiver YP_001196983.1 PFAM: ATP-binding region, ATPase domain protein domain protein YP_001196984.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase YP_001196985.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001196986.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001196987.1 PFAM: histidine kinase internal region YP_001196989.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001196990.1 PFAM: RagB/SusD domain protein YP_001196992.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001196993.1 PFAM: NUMOD4 domain protein YP_001196994.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase YP_001197001.1 PFAM: protein of unknown function DUF477 YP_001197005.1 PFAM: Arginase/agmatinase/formiminoglutamase YP_001197006.1 PFAM: GCN5-related N-acetyltransferase YP_001197007.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_001197009.1 PFAM: NmrA family protein YP_001197010.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001197014.1 PFAM: protein of unknown function DUF1486 YP_001197015.1 PFAM: beta-lactamase YP_001197020.1 PFAM: conserved hypothetical protein 730 YP_001197021.1 PFAM: Activator of Hsp90 ATPase 1 family protein YP_001197024.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001197026.1 PFAM: UspA domain protein; sodium/hydrogen exchanger YP_001197027.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_001197028.1 PFAM: SH3, type 3 domain protein YP_001197029.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001197030.1 PFAM: pseudouridine synthase YP_001197031.1 PFAM: aldehyde dehydrogenase YP_001197033.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001197034.1 PFAM: protein of unknown function, zinc metallopeptidase YP_001197035.1 PFAM: LmbE family protein YP_001197036.1 TIGRFAM: isochorismate synthase; PFAM: Anthranilate synthase component I and chorismate binding protein YP_001197037.1 PFAM: thioesterase superfamily protein YP_001197039.1 PFAM: Fibronectin, type III domain protein; Endonuclease I YP_001197041.1 PFAM: Fibronectin, type III domain protein; Endonuclease I YP_001197042.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001197044.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001197046.1 PFAM: AMP-dependent synthetase and ligase YP_001197048.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_001197050.1 PFAM: zinc finger, SWIM domain protein YP_001197051.1 PFAM: WGR domain protein YP_001197053.1 PFAM: regulatory protein, LuxR; response regulator receiver YP_001197056.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region YP_001197057.1 PFAM: helix-turn-helix domain protein YP_001197059.1 PFAM: TatD-related deoxyribonuclease YP_001197061.1 PFAM: peptidase S24, S26A and S26B YP_001197063.1 PFAM: protein of unknown function UPF0027 YP_001197068.1 PFAM: PKD domain containing protein YP_001197070.1 PFAM: regulatory protein, MarR YP_001197071.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_001197072.1 PFAM: S23 ribosomal protein YP_001197073.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001197074.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain YP_001197075.1 PFAM: glycoside hydrolase, family 18; SMART: chitinase II YP_001197078.1 PFAM: protein of unknown function DUF306, Meta and HslJ YP_001197079.1 PFAM: superoxide dismutase, copper/zinc binding YP_001197081.1 PFAM: carbonic anhydrase YP_001197082.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter YP_001197084.1 PFAM: Ferritin, Dps family protein YP_001197085.1 PFAM: regulatory protein, LysR; LysR, substrate-binding YP_001197087.1 PFAM: protein of unknown function DUF752 YP_001197088.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV YP_001197093.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001197096.1 PFAM: glycosyl hydrolase, BNR repeat-containing protein YP_001197098.1 PFAM: K+ potassium transporter YP_001197099.1 PFAM: Fmu (Sun) domain protein YP_001197101.1 PFAM: Abortive infection protein YP_001197102.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related YP_001197103.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001197104.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001197105.1 PFAM: alanine dehydrogenase/PNT domain protein YP_001197106.1 PFAM: beta-lactamase YP_001197108.1 PFAM: FecR protein YP_001197109.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 YP_001197113.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase YP_001197115.1 PFAM: Vitamin K epoxide reductase YP_001197116.1 PFAM: helix-turn-helix domain protein YP_001197117.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding YP_001197118.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_001197119.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase YP_001197122.1 PFAM: acyltransferase 3 YP_001197123.1 PFAM: major facilitator superfamily MFS_1 YP_001197124.1 PFAM: uncharacterised conserved protein UCP016719 YP_001197125.1 PFAM: beta-lactamase YP_001197126.1 PFAM: glycoside hydrolase, family 20 YP_001197127.1 PFAM: protein of unknown function DUF187 YP_001197128.1 PFAM: esterase YP_001197129.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein YP_001197130.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: LmbE family protein; glucosamine/galactosamine-6-phosphate isomerase YP_001197131.1 PFAM: regulatory protein, DeoR YP_001197132.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001197133.1 PFAM: RagB/SusD domain protein YP_001197134.1 PFAM: uncharacterised conserved protein UCP016719 YP_001197135.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_001197136.1 PFAM: Na+/solute symporter YP_001197137.1 PFAM: beta-lactamase; glycoside hydrolase, family 3 domain protein YP_001197139.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001197140.1 PFAM: regulatory protein GntR, HTH YP_001197141.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001197142.1 PFAM: dihydrodipicolinate reductase; NmrA family protein YP_001197144.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001197145.1 PFAM: TonB-dependent receptor, plug YP_001197147.1 PFAM: Urea transporter YP_001197149.1 PFAM: Urease accessory protein UreD YP_001197150.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K YP_001197151.1 PFAM: Urease accessory protein UreF YP_001197152.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_001197153.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001197154.1 TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit YP_001197155.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_001197158.1 PFAM: glycosyl transferase, family 2; chitin synthase YP_001197159.1 PFAM: response regulator receiver YP_001197160.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001197163.1 PFAM: ATP-binding region, ATPase domain protein domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001197164.1 PFAM: response regulator receiver YP_001197175.1 PFAM: glycoside hydrolase, family 1 YP_001197176.1 PFAM: ATP-binding region, ATPase domain protein domain protein YP_001197177.1 PFAM: 5 nucleotidase, deoxy, cytosolic type C YP_001197178.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein YP_001197179.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_001197180.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_001197181.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_001197183.1 PFAM: GCN5-related N-acetyltransferase YP_001197187.1 PFAM: aldehyde dehydrogenase YP_001197188.1 PFAM: Rhodanese domain protein YP_001197189.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp YP_001197190.1 PFAM: protein of unknown function DUF81 YP_001197191.1 PFAM: GCN5-related N-acetyltransferase YP_001197192.1 PFAM: helix-turn-helix domain protein YP_001197195.1 SMART: AAA ATPase YP_001197196.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II YP_001197197.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I YP_001197198.1 PFAM: metal-dependent phosphohydrolase, HD sub domain YP_001197199.1 PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein YP_001197200.1 PFAM: protein of unknown function DUF395, YeeE/YedE YP_001197201.1 PFAM: protein of unknown function DUF395, YeeE/YedE YP_001197202.1 PFAM: GCN5-related N-acetyltransferase YP_001197203.1 PFAM: FAD dependent oxidoreductase YP_001197204.1 PFAM: regulatory protein, MarR YP_001197205.1 PFAM: nitroreductase YP_001197208.1 PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein YP_001197210.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I YP_001197211.1 TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3 YP_001197212.1 PFAM: Indole-3-glycerol phosphate synthase YP_001197213.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_001197214.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001197216.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001197217.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001197218.1 PFAM: peptidase M1, membrane alanine aminopeptidase YP_001197219.1 PFAM: regulatory protein, TetR YP_001197220.1 PFAM: outer membrane efflux protein YP_001197221.1 PFAM: secretion protein HlyD family protein YP_001197222.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1 YP_001197223.1 PFAM: protein of unknown function DUF328 YP_001197224.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain YP_001197225.1 PFAM: cytochrome oxidase assembly YP_001197226.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001197231.1 PFAM: histidine kinase internal region YP_001197234.1 PFAM: TonB-dependent receptor, plug YP_001197236.1 PFAM: transferase hexapeptide repeat containing protein YP_001197237.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001197238.1 PFAM: Cl- channel, voltage-gated family protein YP_001197239.1 PFAM: HPP family protein YP_001197241.1 PFAM: S23 ribosomal protein YP_001197243.1 PFAM: regulatory protein, TetR YP_001197244.1 PFAM: short-chain dehydrogenase/reductase SDR; KR YP_001197246.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_001197247.1 PFAM: metallophosphoesterase YP_001197250.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001197253.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein YP_001197254.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001197255.1 PFAM: response regulator receiver YP_001197256.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001197257.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001197259.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation YP_001197260.1 TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_001197262.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2 YP_001197264.1 PFAM: glycoside hydrolase, family 5 YP_001197265.1 PFAM: glycoside hydrolase, clan GH-D YP_001197268.1 PFAM: RagB/SusD domain protein YP_001197269.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug YP_001197270.1 PFAM: helix-turn-helix- domain containing protein, AraC type YP_001197271.1 PFAM: glycoside hydrolase, family 26 YP_001197272.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1 YP_001197273.1 PFAM: glycosidase, PH1107-related YP_001197274.1 PFAM: N-acylglucosamine 2-epimerase YP_001197275.1 PFAM: glycoside hydrolase, family 26 YP_001197278.1 PFAM: aldo/keto reductase YP_001197279.1 PFAM: protein of unknown function DUF433 YP_001197281.1 PFAM: glycoside hydrolase, family 3 domain protein YP_001197282.1 PFAM: protein of unknown function DUF303, acetylesterase YP_001197283.1 PFAM: lipolytic enzyme, G-D-S-L family YP_001197284.1 PFAM: NLP/P60 protein YP_001197286.1 PFAM: protein of unknown function DUF1573 YP_001197287.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein YP_001197288.1 PFAM: response regulator receiver; transcriptional regulator domain protein YP_001197289.1 PFAM: beta-lactamase domain protein YP_001197290.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001197291.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1 YP_001197294.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001197297.1 PFAM: beta-lactamase YP_001197298.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_001197300.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001197301.1 required for 70S ribosome assembly YP_001197302.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein YP_001197304.1 PFAM: fumarylacetoacetate (FAA) hydrolase YP_001197305.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_001197306.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_001197307.1 PFAM: glycosyl transferase, family 2 YP_001197311.1 PFAM: PHP C-terminal domain protein YP_001197312.1 PFAM: sugar transferase YP_001197314.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001197315.1 PFAM: peptidylprolyl isomerase, FKBP-type YP_001197319.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001197320.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase YP_001197322.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_001197325.1 PFAM: Di-haem cytochrome c peroxidase YP_001197327.1 PFAM: tRNA/rRNA methyltransferase (SpoU) YP_001197329.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase YP_001197330.1 PFAM: adenylylsulfate kinase YP_001197331.1 PFAM: Silent information regulator protein Sir2 YP_001197333.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001197334.1 PFAM: TrkA-C domain protein; sodium/hydrogen exchanger YP_001197335.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_001197336.1 PFAM: Auxin Efflux Carrier YP_001197337.1 PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein YP_001197338.1 PFAM: NAD-dependent epimerase/dehydratase YP_001197339.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein YP_001197341.1 PFAM: sulfatase YP_001197343.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_001197346.1 PFAM: response regulator receiver; LytTr DNA-binding region YP_001197347.1 PFAM: histidine kinase internal region YP_001197348.1 PFAM: protein of unknown function DUF344 YP_001197350.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller YP_001197351.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2 YP_001197353.1 PFAM: von Willebrand factor, type A YP_001197354.1 PFAM: Scramblase YP_001197355.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001197357.1 TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_001197359.1 PFAM: GCN5-related N-acetyltransferase YP_001197360.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3 YP_001197364.1 PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001197365.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase YP_001197367.1 PFAM: ABC transporter related; SMART: AAA ATPase YP_001197368.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein YP_001197369.1 PFAM: GrpE protein YP_001197370.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001197371.1 PFAM: protein of unknown function DUF214 YP_001197372.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12 YP_001197374.1 PFAM: GCN5-related N-acetyltransferase