-- dump date 20140619_102303 -- class Genbank::CDS -- table cds_note -- id note YP_003019846.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_003019847.1 KEGG: gbm:Gbem_0002 DNA polymerase III beta subunit; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_003019848.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: gbm:Gbem_0003 DNA replication and repair protein RecF YP_003019849.1 KEGG: gbm:Gbem_0004 DNA gyrase B subunit; TIGRFAM: DNA gyrase B subunit; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_003019850.1 KEGG: gbm:Gbem_0005 DNA gyrase subunit alpha; TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003019851.1 KEGG: gur:Gura_0006 hypothetical protein YP_003019852.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_003019853.1 KEGG: gbm:Gbem_0009 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_003019854.1 KEGG: gbm:Gbem_0010 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; hypothetical protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_003019855.1 KEGG: gbm:Gbem_0011 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003019856.1 KEGG: gbm:Gbem_0012 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; GAF domain protein; PAS domain containing protein YP_003019857.1 KEGG: gbm:Gbem_0013 daunorubicin resistance ABC transporter ATPase; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003019858.1 PFAM: ABC transporter; KEGG: gbm:Gbem_0014 ABC-2 type transporter YP_003019859.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_0015 radical SAM protein YP_003019860.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_003019861.1 TIGRFAM: magnesium and cobalt transporter CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: gbm:Gbem_0017 magnesium and cobalt transporter CorA YP_003019862.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_0018 histidine kinase YP_003019863.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: gbm:Gbem_0019 excinuclease ABC C subunit domain protein YP_003019864.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome C peroxidase YP_003019865.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_003019866.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: gbm:Gbem_0022 oxidoreductase FAD/NAD(P)-binding domain protein YP_003019867.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_0023 protein of unknown function DUF6 transmembrane YP_003019868.1 KEGG: eba:ebA2161 hypothetical protein YP_003019869.1 KEGG: glo:Glov_0170 hypothetical protein YP_003019870.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: gbm:Gbem_0026 oxidoreductase FAD/NAD(P)-binding domain protein YP_003019871.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0027 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003019872.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0028 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003019873.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: gbm:Gbem_0029 methyl-viologen-reducing hydrogenase delta subunit YP_003019874.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0030 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003019875.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_0031 protein of unknown function DUF224 cysteine-rich region domain protein YP_003019876.1 KEGG: gbm:Gbem_0032 heterodisulfide reductase subunit YP_003019877.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: gbm:Gbem_0033 ABC transporter related protein YP_003019878.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: gbm:Gbem_0034 ABC transporter related protein YP_003019879.1 KEGG: gbm:Gbem_0035 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein YP_003019880.1 KEGG: gbm:Gbem_0036 hypothetical protein YP_003019881.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA; SMART: AAA ATPase; KEGG: gbm:Gbem_0037 ATPase associated with various cellular activities AAA_5 YP_003019882.1 KEGG: gbm:Gbem_0038 hypothetical protein YP_003019883.1 KEGG: gbm:Gbem_0039 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase YP_003019884.1 KEGG: gbm:Gbem_0040 methyl-accepting chemotaxis sensory transducer; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003019885.1 KEGG: gbm:Gbem_0041 hypothetical protein YP_003019886.1 KEGG: gbm:Gbem_0042 hypothetical protein YP_003019887.1 KEGG: gbm:Gbem_0043 cytochrome C oxidase subunit I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_003019888.1 PFAM: cytochrome C oxidase subunit III; KEGG: gbm:Gbem_0044 cytochrome C oxidase subunit III YP_003019889.1 TIGRFAM: caa(3)-type oxidase subunit IV; KEGG: gbm:Gbem_0045 caa(3)-type oxidase subunit IV YP_003019890.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C class I; KEGG: gbm:Gbem_0046 cytochrome C oxidase subunit II YP_003019891.1 PFAM: UbiA prenyltransferase; KEGG: gbm:Gbem_0047 UbiA prenyltransferase YP_003019892.1 KEGG: gbm:Gbem_0048 hypothetical protein YP_003019893.1 KEGG: gbm:Gbem_0049 pyridoxal phosphate-dependent acyltransferase; TIGRFAM: pyridoxal phosphate-dependent acyltransferase; PFAM: aminotransferase class I and II; aminotransferase class-III; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003019894.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_003019895.1 KEGG: gbm:Gbem_0051 hypothetical protein YP_003019896.1 PFAM: OmpA/MotB domain protein; KEGG: gbm:Gbem_0053 OmpA/MotB domain protein YP_003019897.1 PFAM: peptidase M28; peptidase M20; KEGG: gbm:Gbem_0054 peptidase M28 YP_003019898.1 PFAM: protein of unknown function DUF323; methyltransferase type 11; methyltransferase type 12; KEGG: gbm:Gbem_0055 protein of unknown function DUF323 YP_003019899.1 PFAM: aminotransferase class I and II; KEGG: gbm:Gbem_0056 aminotransferase class I and II YP_003019900.1 KEGG: gbm:Gbem_0057 hypothetical protein YP_003019901.1 PFAM: protein of unknown function DUF1555; KEGG: cja:CJA_2986 PEP-Cterm exosortase interaction domain protein YP_003019902.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: gbm:Gbem_0065 histidine kinase YP_003019903.1 PFAM: response regulator receiver; type IV pilus assembly PilZ; SMART: response regulator receiver; KEGG: gbm:Gbem_0075 response regulator receiver modulated PilZ sensor protein YP_003019904.1 PFAM: UvrD/REP helicase; KEGG: gbm:Gbem_0076 UvrD/REP helicase YP_003019905.1 KEGG: gbm:Gbem_0077 hypothetical protein YP_003019906.1 KEGG: gbm:Gbem_0078 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA YP_003019907.1 PFAM: glycosyl transferase family 51; KEGG: gbm:Gbem_0079 glycosyl transferase family 51 YP_003019908.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: gbm:Gbem_0080 response regulator receiver modulated metal dependent phosphohydrolase YP_003019909.1 KEGG: gbm:Gbem_0081 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; hypothetical protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein YP_003019910.1 PFAM: thiamine biosynthesis protein; KEGG: gbm:Gbem_0082 thiamine biosynthesis protein YP_003019911.1 PFAM: general secretory system II protein E domain protein; KEGG: gbm:Gbem_0083 general secretory system II protein E domain protein YP_003019912.1 KEGG: gbm:Gbem_0084 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA YP_003019913.1 PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gbm:Gbem_0085 aminotransferase class I and II YP_003019914.1 PFAM: alpha/beta hydrolase fold; KEGG: gbm:Gbem_0086 alpha/beta hydrolase fold YP_003019915.1 KEGG: gbm:Gbem_0087 hypothetical protein YP_003019916.1 PFAM: multicopper oxidase type 2; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: gbm:Gbem_0088 multicopper oxidase type 2 YP_003019917.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: gbm:Gbem_0089 rhodanese domain protein YP_003019918.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_003019919.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_003019920.1 KEGG: gbm:Gbem_0092 hypothetical protein YP_003019921.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_0093 radical SAM protein YP_003019922.1 KEGG: gbm:Gbem_0095 hypothetical protein YP_003019923.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate YP_003019924.1 PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_0097 major facilitator superfamily MFS_1 YP_003019925.1 PFAM: dihydrouridine synthase; KEGG: gbm:Gbem_0098 dihydrouridine synthase YP_003019926.1 PFAM: peptidylprolyl isomerase; KEGG: gbm:Gbem_0099 peptidylprolyl isomerase YP_003019927.1 KEGG: gbm:Gbem_0100 hypothetical protein YP_003019928.1 KEGG: gbm:Gbem_0101 hypothetical protein YP_003019929.1 PFAM: protein of unknown function DUF480; KEGG: gbm:Gbem_0102 protein of unknown function DUF480 YP_003019930.1 KEGG: gbm:Gbem_0103 hypothetical protein YP_003019931.1 PFAM: protein of unknown function DUF1847; KEGG: gbm:Gbem_0104 protein of unknown function DUF1847 YP_003019932.1 KEGG: gbm:Gbem_0106 flagellin domain protein YP_003019933.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: gbm:Gbem_0107 2'-5' RNA ligase YP_003019934.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003019935.1 KEGG: gbm:Gbem_0109 hypothetical protein YP_003019936.1 KEGG: gbm:Gbem_0110 hypothetical protein YP_003019937.1 KEGG: gbm:Gbem_0112 transmembrane protein YP_003019938.1 KEGG: gbm:Gbem_0113 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_003019939.1 TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: gbm:Gbem_0114 ATPase P YP_003019940.1 KEGG: gbm:Gbem_0115 hypothetical protein YP_003019941.1 KEGG: gbm:Gbem_0116 hypothetical protein YP_003019942.1 KEGG: gbm:Gbem_0117 hypothetical protein YP_003019943.1 KEGG: gbm:Gbem_0118 hypothetical protein YP_003019944.1 KEGG: gbm:Gbem_0119 hypothetical protein YP_003019945.1 PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_0120 cytochrome C oxidase mono-heme subunit/FixO YP_003019946.1 PFAM: cytochrome C oxidase subunit I; KEGG: gbm:Gbem_0121 cytochrome C oxidase subunit I YP_003019947.1 KEGG: gbm:Gbem_0122 hypothetical protein YP_003019948.1 KEGG: gbm:Gbem_0123 hypothetical protein YP_003019949.1 PFAM: polysulphide reductase NrfD; KEGG: gbm:Gbem_0124 polysulphide reductase NrfD YP_003019950.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_0125 molybdopterin oxidoreductase Fe4s4 region YP_003019951.1 PFAM: protein of unknown function DUF344; KEGG: gbm:Gbem_0126 protein of unknown function DUF344 YP_003019952.1 PFAM: protein of unknown function DUF1328; KEGG: gbm:Gbem_0127 protein of unknown function DUF1328 YP_003019953.1 TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme; KEGG: gbm:Gbem_0128 DNA ligase D YP_003019954.1 KEGG: gbm:Gbem_0129 hypothetical protein YP_003019955.1 KEGG: gbm:Gbem_0130 hypothetical protein YP_003019956.1 KEGG: gbm:Gbem_0131 hypothetical protein YP_003019957.1 KEGG: gbm:Gbem_0132 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003019958.1 PFAM: glycoside hydrolase family 57; KEGG: gbm:Gbem_0133 glycoside hydrolase family 57 YP_003019959.1 KEGG: gbm:Gbem_0134 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; SMART: alpha amylase catalytic sub domain YP_003019960.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gbm:Gbem_0135 alpha amylase catalytic region YP_003019961.1 KEGG: gbm:Gbem_0136 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused maltokinase; PFAM: alpha amylase catalytic region; aminoglycoside phosphotransferase; SMART: alpha amylase catalytic sub domain YP_003019962.1 PFAM: MscS Mechanosensitive ion channel; KEGG: geo:Geob_2758 MscS mechanosensitive ion channel YP_003019963.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: gbm:Gbem_0137 ribonuclease BN YP_003019964.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_1405 short chain dehydrogenase/reductase family oxidoreductase YP_003019965.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gbm:Gbem_0138 short-chain dehydrogenase/reductase SDR YP_003019966.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: gbm:Gbem_0139 alcohol dehydrogenase GroES domain protein YP_003019967.1 PFAM: cyclase/dehydrase; KEGG: gbm:Gbem_0140 cyclase/dehydrase YP_003019968.1 KEGG: gbm:Gbem_0141 Ku protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein YP_003019969.1 KEGG: gbm:Gbem_0142 hypothetical protein YP_003019970.1 KEGG: gbm:Gbem_0143 hypothetical protein YP_003019971.1 KEGG: gbm:Gbem_0144 hypothetical protein YP_003019972.1 KEGG: gbm:Gbem_0145 hypothetical protein YP_003019973.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_0146 hemerythrin HHE cation binding domain protein YP_003019974.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0147 response regulator receiver protein YP_003019975.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_003019976.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0149 response regulator receiver protein YP_003019977.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_003019978.1 KEGG: gbm:Gbem_0151 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: polynucleotide adenylyltransferase region YP_003019979.1 KEGG: gbm:Gbem_0152 hypothetical protein YP_003019980.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0153 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003019981.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: gbm:Gbem_0154 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003019982.1 KEGG: gbm:Gbem_0155 hypothetical protein YP_003019983.1 KEGG: gbm:Gbem_0156 hypothetical protein YP_003019984.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_0158 radical SAM protein YP_003019985.1 KEGG: gbm:Gbem_0159 ribonuclease, Rne/Rng family; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003019986.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_003019987.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: gbm:Gbem_0161 Rieske (2Fe-2S) domain protein YP_003019988.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: gbm:Gbem_0162 ribosomal protein L21 YP_003019989.1 involved in the peptidyltransferase reaction during translation YP_003019990.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_003019991.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gbm:Gbem_0166 proton-translocating NADH-quinone oxidoreductase, chain N YP_003019992.1 KEGG: gbm:Gbem_0167 hypothetical protein YP_003019993.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gbm:Gbem_0168 proton-translocating NADH-quinone oxidoreductase, chain M YP_003019994.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: gbm:Gbem_0169 proton-translocating NADH-quinone oxidoreductase, chain L YP_003019995.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: gbm:Gbem_0170 NADH-ubiquinone oxidoreductase chain 4L YP_003019996.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: gbm:Gbem_0171 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003019997.1 Catalyzes the transfer of electrons from NADH to quinone YP_003019998.1 PFAM: ankyrin; SMART: ankyrin; KEGG: gbm:Gbem_0173 ankyrin YP_003019999.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: gbm:Gbem_0174 respiratory-chain NADH dehydrogenase subunit 1 YP_003020000.1 Catalyzes the transfer of electrons from NADH to quinone YP_003020001.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: gbm:Gbem_0176 respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_003020002.1 Catalyzes the transfer of electrons from NADH to quinone YP_003020003.1 NuoBCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex YP_003020004.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: gbm:Gbem_0179 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_003020005.1 PFAM: general secretory system II protein E domain protein; KEGG: gbm:Gbem_0180 general secretory system II protein E domain protein YP_003020006.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: gbm:Gbem_0181 quinone oxidoreductase, YhdH/YhfP family YP_003020007.1 KEGG: gbm:Gbem_0182 GreA/GreB family elongation factor YP_003020008.1 KEGG: gbm:Gbem_0183 hypothetical protein YP_003020009.1 KEGG: gbm:Gbem_0184 hypothetical protein YP_003020010.1 KEGG: gbm:Gbem_0185 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase YP_003020011.1 PFAM: beta-lactamase; flavodoxin/nitric oxide synthase; NADPH-dependent FMN reductase; KEGG: gbm:Gbem_0186 beta-lactamase YP_003020012.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: gbm:Gbem_0187 DEAD/DEAH box helicase YP_003020013.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: gbm:Gbem_0188 histone family protein DNA-binding protein YP_003020014.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: gbm:Gbem_0189 penicillin-binding protein, 1A family YP_003020015.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: gbm:Gbem_0190 triphosphoribosyl-dephospho-CoA protein YP_003020016.1 KEGG: gbm:Gbem_0191 response regulator receiver protein YP_003020017.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: gbm:Gbem_0192 twitching motility protein YP_003020018.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_003020019.1 PFAM: protein of unknown function DUF480; KEGG: gbm:Gbem_0194 protein of unknown function DUF480 YP_003020020.1 PFAM: lytic transglycosylase catalytic; KEGG: gbm:Gbem_0195 lytic transglycosylase catalytic protein YP_003020021.1 KEGG: gbm:Gbem_0196 hypothetical protein YP_003020022.1 KEGG: gbm:Gbem_0197 hypothetical protein YP_003020024.1 KEGG: gbm:Gbem_0198 hypothetical protein YP_003020025.1 KEGG: gbm:Gbem_0199 hypothetical protein YP_003020026.1 PFAM: shikimate kinase; KEGG: gbm:Gbem_0200 shikimate kinase YP_003020027.1 PFAM: histidine kinase HAMP region domain protein; GGDEF domain containing protein; SMART: histidine kinase HAMP region domain protein; GGDEF domain containing protein; KEGG: gbm:Gbem_0201 diguanylate cyclase YP_003020028.1 KEGG: gbm:Gbem_0202 hypothetical protein YP_003020029.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_003020030.1 KEGG: gbm:Gbem_0204 hypothetical protein YP_003020031.1 KEGG: gbm:Gbem_0205 hypothetical protein YP_003020032.1 TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: gbm:Gbem_0206 excinuclease ABC subunit A YP_003020033.1 PFAM: pentapeptide repeat protein; KEGG: gbm:Gbem_0207 pentapeptide repeat protein YP_003020034.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_0208 cold-shock DNA-binding domain protein YP_003020035.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0209 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_003020036.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_003020037.1 PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_0211 hypothetical protein YP_003020038.1 KEGG: gbm:Gbem_0212 DNA polymerase III subunits gamma and tau; TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA YP_003020039.1 KEGG: gbm:Gbem_0213 hypothetical protein YP_003020040.1 KEGG: gbm:Gbem_0214 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase; transcription factor CarD; helicase; TRCF domain protein; SMART: DEAD-like helicase ; helicase YP_003020041.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gbm:Gbem_0215 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003020042.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: gbm:Gbem_0216 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003020043.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: gbm:Gbem_0217 chaperone DnaJ domain protein YP_003020044.1 PFAM: FAD dependent oxidoreductase; amine oxidase; KEGG: gbm:Gbem_0218 amine oxidase YP_003020045.1 KEGG: gbm:Gbem_0219 hypothetical protein YP_003020046.1 KEGG: gbm:Gbem_0220 hypothetical protein YP_003020047.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: gbm:Gbem_0221 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003020048.1 PFAM: GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: gbm:Gbem_0222 GntR family transcriptional regulator with aminotransferase domain YP_003020049.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gbm:Gbem_0223 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003020050.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: gbm:Gbem_0224 lipid A biosynthesis acyltransferase YP_003020051.1 KEGG: gbm:Gbem_0225 hypothetical protein YP_003020052.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: gbm:Gbem_0226 phosphoenolpyruvate carboxylase YP_003020053.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_2538 protein of unknown function DUF1555 YP_003020054.1 KEGG: gbm:Gbem_0227 hypothetical protein YP_003020055.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: gbm:Gbem_0228 GPR1/FUN34/YaaH family protein YP_003020056.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0229 methyl-accepting chemotaxis sensory transducer YP_003020058.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: gbm:Gbem_0231 UbiD family decarboxylase YP_003020059.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_003020060.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: gbm:Gbem_0233 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003020061.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_0234 radical SAM protein YP_003020062.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_0235 radical SAM protein YP_003020063.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: gbm:Gbem_0236 histidinol-phosphate aminotransferase YP_003020064.1 PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; KEGG: gbm:Gbem_0237 3'-5' exonuclease YP_003020065.1 PFAM: protein of unknown function DUF72; KEGG: gbm:Gbem_0238 protein of unknown function DUF72 YP_003020066.1 KEGG: gbm:Gbem_0239 hypothetical protein YP_003020067.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_003020068.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; methyltransferase small; methyltransferase type 11; methyltransferase type 12; KEGG: gbm:Gbem_0241 ribosomal protein L11 methyltransferase YP_003020069.1 PFAM: protein of unknown function DUF299; KEGG: gbm:Gbem_0242 protein of unknown function DUF299 YP_003020070.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_0243 transcriptional regulator YP_003020071.1 KEGG: gbm:Gbem_0244 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003020072.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_003020073.1 KEGG: gbm:Gbem_0246 hypothetical protein YP_003020074.1 PFAM: protein of unknown function DUF507; KEGG: gbm:Gbem_0247 hypothetical protein YP_003020075.1 PFAM: chaperonin Cpn10; KEGG: gbm:Gbem_0248 chaperonin Cpn10 YP_003020076.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_003020077.1 KEGG: gbm:Gbem_0250 hypothetical protein YP_003020078.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: gbm:Gbem_0251 metal dependent phosphohydrolase YP_003020079.1 KEGG: gur:Gura_0264 hypothetical protein YP_003020080.1 PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: gbm:Gbem_0253 serine protein kinase, PrkA YP_003020081.1 KEGG: gbm:Gbem_0254 hypothetical protein YP_003020082.1 KEGG: gbm:Gbem_0255 SpoVR-like family protein YP_003020083.1 SMART: PrkA AAA domain protein; KEGG: gbm:Gbem_0256 serine protein kinase, PrkA YP_003020084.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0257 methyl-accepting chemotaxis sensory transducer YP_003020085.1 PFAM: transposase IS4 family protein; KEGG: ppd:Ppro_1770 transposase, IS4 family protein YP_003020086.1 KEGG: gbm:Gbem_0258 iron-sulfur cluster-binding protein YP_003020087.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding protein; KEGG: gbm:Gbem_0259 succinyl-CoA synthetase, subunit alpha YP_003020088.1 catalyzes the interconversion of succinyl-CoA and succinate YP_003020089.1 KEGG: gbm:Gbem_0261 hypothetical protein YP_003020090.1 KEGG: gbm:Gbem_0262 hypothetical protein YP_003020091.1 KEGG: gbm:Gbem_0263 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B YP_003020092.1 KEGG: gbm:Gbem_0264 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A YP_003020093.1 PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: gbm:Gbem_0265 PHP domain protein YP_003020094.1 PFAM: protein of unknown function DUF55; KEGG: gbm:Gbem_0266 protein of unknown function DUF55 YP_003020095.1 TIGRFAM: magnesium and cobalt transporter CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: gbm:Gbem_0267 magnesium and cobalt transporter CorA YP_003020096.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: gbm:Gbem_0268 aminopeptidase N YP_003020097.1 PFAM: cytochrome b5; KEGG: gbm:Gbem_0269 cytochrome b5 YP_003020098.1 KEGG: gbm:Gbem_0270 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003020099.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: gbm:Gbem_0271 nitrite and sulphite reductase 4Fe-4S region YP_003020100.1 KEGG: gbm:Gbem_0272 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein YP_003020101.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_003020102.1 PFAM: protein of unknown function DUF554; KEGG: gbm:Gbem_0274 protein of unknown function DUF554 YP_003020103.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_003020104.1 KEGG: gbm:Gbem_0276 hypothetical protein YP_003020105.1 PFAM: homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; KEGG: gbm:Gbem_0277 homocysteine S-methyltransferase YP_003020106.1 KEGG: gbm:Gbem_0278 hypothetical protein YP_003020107.1 PFAM: transketolase; KEGG: gbm:Gbem_0279 transketolase YP_003020108.1 PFAM: transketolase; transketolase domain protein; KEGG: gbm:Gbem_0280 transketolase YP_003020109.1 KEGG: gbm:Gbem_0281 hypothetical protein YP_003020110.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0282 integral membrane sensor signal transduction histidine kinase YP_003020111.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_0283 Fis family transcriptional regulator YP_003020112.1 KEGG: gbm:Gbem_0284 hypothetical protein YP_003020113.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0285 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003020114.1 KEGG: gbm:Gbem_0286 response regulator receiver protein YP_003020115.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gbm:Gbem_0291 short-chain dehydrogenase/reductase SDR YP_003020116.1 PFAM: chloride channel core; KEGG: gbm:Gbem_0292 chloride channel core protein YP_003020117.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gur:Gura_3461 hypothetical protein YP_003020118.1 PFAM: hypothetical protein; TPR repeat-containing protein; hypothetical protein; Sel1 domain protein repeat-containing protein; SMART: hypothetical protein; Sel1 domain protein repeat-containing protein; KEGG: gsu:GSU3191 TPR domain-containing protein YP_003020119.1 PFAM: OmpA/MotB domain protein; KEGG: gbm:Gbem_0293 OmpA/MotB domain protein YP_003020120.1 KEGG: gbm:Gbem_0294 hypothetical protein YP_003020121.1 PFAM: type II secretion system protein E; GAF domain protein; general secretory system protein E; SMART: GAF domain protein; KEGG: gbm:Gbem_0295 phytochrome sensor protein YP_003020122.1 PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: gbm:Gbem_0296 adenylate/guanylate cyclase with CHASE sensor YP_003020123.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: gbm:Gbem_0298 tetratricopeptide TPR_2 repeat protein YP_003020124.1 PFAM: FecR protein; KEGG: gbm:Gbem_0299 anti-FecI sigma factor, FecR YP_003020125.1 PFAM: histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0300 sensor with HAMP domain YP_003020126.1 PFAM: NADPH-dependent FMN reductase; KEGG: gbm:Gbem_0301 NADPH-dependent FMN reductase YP_003020127.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: gbm:Gbem_0302 AMP-dependent synthetase and ligase YP_003020128.1 PFAM: amidohydrolase 2; KEGG: gbm:Gbem_0303 amidohydrolase 2 YP_003020129.1 PFAM: sigma-54 factor interaction domain-containing protein; SMART: ATPase AAA; KEGG: gbm:Gbem_0304 response regulator receiver protein YP_003020130.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_0307 LysR family transcriptional regulator YP_003020131.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_0308 hypothetical protein YP_003020132.1 KEGG: gbm:Gbem_0309 hypothetical protein YP_003020133.1 SMART: helix-turn-helix domain protein; KEGG: geo:Geob_1722 XRE family transcriptional regulator YP_003020134.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: geo:Geob_1723 HipA N-terminal domain protein YP_003020135.1 KEGG: gbm:Gbem_0310 hypothetical protein YP_003020136.1 PFAM: protein of unknown function DUF891; KEGG: geo:Geob_0530 protein of unknown function DUF891 YP_003020137.1 KEGG: gbm:Gbem_0311 hypothetical protein YP_003020138.1 PFAM: protein of unknown function DUF107; KEGG: gbm:Gbem_0323 protein of unknown function DUF107 YP_003020139.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: gbm:Gbem_0324 band 7 protein YP_003020140.1 KEGG: dat:HRM2_11760 hypothetical protein YP_003020141.1 KEGG: par:Psyc_1719 heat shock protein 90 YP_003020142.1 PFAM: radical SAM protein; KEGG: dat:HRM2_05160 methyltransferase YP_003020144.1 KEGG: gbm:Gbem_0312 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_003020145.1 KEGG: gbm:Gbem_0313 Fe-S-cluster-containing hydrogenase components 2-like protein YP_003020146.1 KEGG: gbm:Gbem_0314 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003020147.1 PFAM: protein of unknown function DUF1555; KEGG: cja:CJA_0629 PEP-Cterm exosortase interaction domain protein YP_003020148.1 KEGG: gbm:Gbem_2966 hypothetical protein YP_003020149.1 KEGG: gbm:Gbem_0738 response regulator receiver protein YP_003020150.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: ppd:Ppro_1387 catalase/peroxidase HPI YP_003020151.1 PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; SMART: GAF domain protein; ATPase AAA; KEGG: gbm:Gbem_0330 phytochrome sensor protein YP_003020152.1 KEGG: gbm:Gbem_0331 hypothetical protein YP_003020153.1 PFAM: beta-lactamase; KEGG: gbm:Gbem_0332 beta-lactamase YP_003020154.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_0333 glycosyl transferase group 1 YP_003020155.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source YP_003020156.1 PFAM: carboxyl transferase; KEGG: gbm:Gbem_0335 carboxyl transferase YP_003020157.1 KEGG: gbm:Gbem_0336 hypothetical protein YP_003020158.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: gbm:Gbem_0337 biotin/lipoyl attachment domain-containing protein YP_003020159.1 PFAM: protein of unknown function DUF195; KEGG: gbm:Gbem_0340 protein of unknown function DUF195 YP_003020160.1 PFAM: alpha/beta hydrolase fold; KEGG: gbm:Gbem_0341 alpha/beta hydrolase fold YP_003020161.1 KEGG: gbm:Gbem_0342 hypothetical protein YP_003020162.1 TIGRFAM: exodeoxyribonuclease V, subunit alpha; KEGG: gbm:Gbem_0343 exodeoxyribonuclease V, subunit alpha YP_003020163.1 KEGG: gbm:Gbem_0344 exodeoxyribonuclease V, beta subunit; TIGRFAM: exodeoxyribonuclease V subunit beta; PFAM: UvrD/REP helicase YP_003020164.1 KEGG: gbm:Gbem_0345 exodeoxyribonuclease V, gamma subunit; TIGRFAM: exodeoxyribonuclease V, subunit gamma; PFAM: exodeoxyribonuclease V RecC subunit YP_003020165.1 KEGG: gbm:Gbem_0346 hypothetical protein YP_003020166.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: gbm:Gbem_0347 endonuclease/exonuclease/phosphatase YP_003020167.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: gbm:Gbem_0348 acetate kinase YP_003020168.1 KEGG: gbm:Gbem_0349 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_003020169.1 KEGG: gbm:Gbem_0350 hypothetical protein YP_003020170.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: gbm:Gbem_0351 6-phosphogluconate dehydrogenase NAD-binding YP_003020171.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: chorismate binding-like; aminotransferase class IV; KEGG: gur:Gura_0607 para-aminobenzoate synthase, subunit I YP_003020172.1 KEGG: gbm:Gbem_0352 hypothetical protein YP_003020173.1 KEGG: gbm:Gbem_0353 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_003020174.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); defense mechanism against a harmful effect of D-tyrosine YP_003020175.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: gbm:Gbem_0355 Appr-1-p processing domain protein YP_003020176.1 KEGG: gbm:Gbem_0356 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2 YP_003020177.1 PFAM: histidine triad (HIT) protein; KEGG: gbm:Gbem_0357 histidine triad (HIT) protein YP_003020178.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_003020179.1 KEGG: gbm:Gbem_0359 hypothetical protein YP_003020180.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_0360 transcriptional regulator, BadM/Rrf2 family YP_003020181.1 KEGG: gbm:Gbem_0361 PP-loop domain protein YP_003020182.1 PFAM: heat shock protein Hsp20; KEGG: gbm:Gbem_0362 heat shock protein HSP20 YP_003020183.1 KEGG: gbm:Gbem_0363 hypothetical protein YP_003020184.1 KEGG: gbm:Gbem_0364 hypothetical protein YP_003020185.1 KEGG: gbm:Gbem_0365 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2 YP_003020186.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_0366 type IV pilus assembly PilZ YP_003020187.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent hydrolase HDOD; KEGG: gbm:Gbem_0367 signal transduction protein YP_003020188.1 PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: gbm:Gbem_0368 type II secretion system protein E YP_003020189.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: gbm:Gbem_0369 Smr protein/MutS2 YP_003020190.1 PFAM: ROK family protein; KEGG: gme:Gmet_2805 N-acetylglucosamine kinase YP_003020191.1 PFAM: peptidylprolyl isomerase; KEGG: gbm:Gbem_0372 peptidylprolyl isomerase YP_003020192.1 PFAM: protein of unknown function DUF77; KEGG: gbm:Gbem_0373 protein of unknown function DUF77 YP_003020193.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: gbm:Gbem_0374 NAD-dependent epimerase/dehydratase YP_003020194.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0375 response regulator receiver protein YP_003020195.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_0376 type IV pilus assembly PilZ YP_003020196.1 KEGG: gbm:Gbem_0377 hypothetical protein YP_003020197.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gur:Gura_3514 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_003020198.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: geo:Geob_1285 MarR family transcriptional regulator YP_003020199.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0378 response regulator receiver protein YP_003020200.1 KEGG: gbm:Gbem_0379 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein YP_003020201.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: gbm:Gbem_0380 hydrogenase maturation protease YP_003020202.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: gbm:Gbem_0381 fibronectin type III domain protein YP_003020203.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_0382 hypothetical protein YP_003020204.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0383 methyl-accepting chemotaxis sensory transducer YP_003020205.1 PFAM: integrase family protein; KEGG: ppd:Ppro_3121 phage integrase family protein YP_003020206.1 TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: ppd:Ppro_3122 hypothetical protein YP_003020207.1 TIGRFAM: addiction module antidote protein; KEGG: ppd:Ppro_3123 transcriptional regulator YP_003020208.1 PFAM: integrase; KEGG: eba:ebA5932 transposase YP_003020209.1 PFAM: transposase IS3/IS911 family protein; KEGG: lch:Lcho_3000 transposition helper protein YP_003020211.1 PFAM: ion transport 2 domain protein; KEGG: swd:Swoo_2650 ion transport 2 domain-containing protein YP_003020213.1 KEGG: glo:Glov_2577 hypothetical protein YP_003020214.1 KEGG: xac:XACb0031 TrwC protein YP_003020216.1 KEGG: dvm:DvMF_1533 hypothetical protein YP_003020217.1 KEGG: tgr:Tgr7_0662 hypothetical protein YP_003020218.1 KEGG: gbm:Gbem_0385 truncated transposase, ISL3 family YP_003020220.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: gbm:Gbem_0387 large conductance mechanosensitive channel protein YP_003020221.1 PFAM: OmpA/MotB domain protein; OmpF family protein; KEGG: gbm:Gbem_0388 OmpA/MotB domain protein YP_003020222.1 KEGG: gbm:Gbem_0389 hypothetical protein YP_003020223.1 KEGG: gbm:Gbem_0390 hypothetical protein YP_003020224.1 KEGG: gbm:Gbem_0391 hypothetical protein YP_003020225.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gbm:Gbem_0392 CoA-substrate-specific enzyme activase YP_003020226.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gbm:Gbem_0393 2-hydroxyglutaryl-CoA dehydratase D-component YP_003020227.1 KEGG: gbm:Gbem_0394 hypothetical protein YP_003020228.1 TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: gbm:Gbem_0395 glycine cleavage system protein T YP_003020229.1 TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein; KEGG: gbm:Gbem_0396 glycine cleavage system protein H YP_003020230.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_003020231.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_003020232.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: gbm:Gbem_0399 biotin/lipoate A/B protein ligase YP_003020233.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: gur:Gura_3623 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_003020234.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gur:Gura_3624 integral membrane sensor signal transduction histidine kinase YP_003020235.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gur:Gura_3625 two component, sigma-54 specific, fis family transcriptional regulator YP_003020236.1 TIGRFAM: cytochrome C family protein; KEGG: gur:Gura_3626 cytochrome C family protein YP_003020237.1 KEGG: gur:Gura_3627 hypothetical protein YP_003020238.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003020239.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: gbm:Gbem_0401 alcohol dehydrogenase zinc-binding domain protein YP_003020240.1 PFAM: transposase IS3/IS911 family protein; KEGG: dia:Dtpsy_3328 transposase IS3/IS911 family protein YP_003020241.1 PFAM: integrase; KEGG: bph:Bphy_4961 integrase catalytic region YP_003020242.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: gbm:Gbem_0403 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003020243.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: gbm:Gbem_0404 thioredoxin YP_003020244.1 TIGRFAM: siroheme synthase; KEGG: gbm:Gbem_0405 siroheme synthase YP_003020245.1 TIGRFAM: cytochrome C biogenesis protein CcsB; PFAM: cytochrome C assembly protein; KEGG: gbm:Gbem_0406 cytochrome C biogenesis protein CcsB YP_003020246.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_003020247.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_003020248.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; KEGG: gbm:Gbem_0409 uroporphyrin-III C-methyltransferase YP_003020249.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_003020250.1 PFAM: cupin; KEGG: gbm:Gbem_0411 cupin 2 conserved barrel domain protein YP_003020251.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_003020252.1 involved in start site selection during the initiation of translation YP_003020253.1 PFAM: RNA-binding S4 domain protein; KEGG: gbm:Gbem_0414 RNA-binding S4 domain protein YP_003020254.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_003020255.1 PFAM: DNA polymerase beta domain protein region; KEGG: gur:Gura_2086 DNA polymerase subunit beta YP_003020256.1 PFAM: SEC-C motif domain protein; KEGG: hch:HCH_07011 hypothetical protein YP_003020257.1 PFAM: zinc finger SWIM domain protein; KEGG: gur:Gura_0606 zinc finger SWIM domain-containing protein YP_003020258.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: gur:Gura_0598 non-specific serine/threonine protein kinase YP_003020259.1 KEGG: dps:DPPB61 hypothetical protein YP_003020260.1 KEGG: dps:DPPB62 hypothetical protein YP_003020261.1 KEGG: geo:Geob_3781 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003020262.1 KEGG: geo:Geob_0735 hypothetical protein YP_003020263.1 KEGG: gur:Gura_0021 hypothetical protein YP_003020264.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sfu:Sfum_2820 dinitrogenase iron-molybdenum cofactor biosynthesis YP_003020265.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: dno:DNO_0223 type I restriction-modification system, M subunit YP_003020266.1 KEGG: mmw:Mmwyl1_4371 hypothetical protein YP_003020267.1 PFAM: restriction modification system DNA specificity domain; KEGG: dol:Dole_0249 restriction modification system DNA specificity subunit YP_003020268.1 KEGG: dno:DNO_0220 type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase YP_003020269.1 PFAM: protein of unknown function DUF45; KEGG: dol:Dole_0244 hypothetical protein YP_003020270.1 KEGG: gbm:Gbem_0424 hypothetical protein YP_003020272.1 KEGG: gur:Gura_3081 hypothetical protein YP_003020273.1 TIGRFAM: hypothetical protein; PFAM: protein of unknown function DUF11; KEGG: gur:Gura_3080 hypothetical protein YP_003020274.1 PFAM: OmpA/MotB domain protein; KEGG: gur:Gura_3079 OmpA/MotB domain-containing protein YP_003020275.1 KEGG: gur:Gura_3078 hypothetical protein YP_003020276.1 KEGG: gur:Gura_3077 hypothetical protein YP_003020277.1 SMART: hypothetical protein; KEGG: gur:Gura_3076 hypothetical protein YP_003020278.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: gur:Gura_3075 TPR repeat-containing protein YP_003020279.1 KEGG: gur:Gura_3074 hypothetical protein YP_003020280.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: gur:Gura_3073 MotA/TolQ/ExbB proton channel YP_003020281.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: gur:Gura_3072 biopolymer transporter ExbD/TolR YP_003020282.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: gur:Gura_3071 hypothetical protein YP_003020283.1 KEGG: gur:Gura_3070 hypothetical protein YP_003020284.1 KEGG: gbm:Gbem_0797 hypothetical protein YP_003020285.1 KEGG: gbm:Gbem_0425 hypothetical protein YP_003020286.1 KEGG: gbm:Gbem_0426 hypothetical protein YP_003020287.1 KEGG: gbm:Gbem_0427 capsular polysaccharide biosynthesis protein YP_003020288.1 PFAM: transposase IS4 family protein; KEGG: ppd:Ppro_1770 transposase, IS4 family protein YP_003020289.1 PFAM: multiple antibiotic resistance (MarC)-related protein; integral membrane protein TerC; KEGG: gbm:Gbem_0428 multiple antibiotic resistance (MarC)-related protein YP_003020290.1 KEGG: gbm:Gbem_0429 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003020291.1 KEGG: gbm:Gbem_0434 hypothetical protein YP_003020292.1 KEGG: gbm:Gbem_0435 hypothetical protein YP_003020293.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_0436 protein of unknown function DUF214 YP_003020294.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_0437 ABC transporter YP_003020295.1 PFAM: ABC transporter; KEGG: gbm:Gbem_0438 ABC-1 domain protein YP_003020296.1 PFAM: regulatory protein TetR; KEGG: gbm:Gbem_0439 TetR family transcriptional regulator YP_003020297.1 KEGG: gur:Gura_3909 hypothetical protein YP_003020298.1 KEGG: gbm:Gbem_0444 hypothetical protein YP_003020299.1 KEGG: gbm:Gbem_0445 hypothetical protein YP_003020300.1 PFAM: hypothetical protein; hypothetical protein; hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_0446 tetratricopeptide TPR_2 repeat protein YP_003020301.1 PFAM: protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: gbm:Gbem_0447 protein of unknown function DUF1058 YP_003020302.1 PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_0448 peptidase M48 Ste24p YP_003020303.1 PFAM: NMT1/THI5 like domain protein; KEGG: gbm:Gbem_0449 NMT1/THI5 like domain protein YP_003020304.1 KEGG: gbm:Gbem_0450 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; PAC repeat-containing protein YP_003020305.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gbm:Gbem_0451 two component transcriptional regulator, LuxR family YP_003020306.1 PFAM: CsbD family protein; KEGG: gbm:Gbem_0452 CsbD family protein YP_003020307.1 KEGG: gbm:Gbem_0453 hypothetical protein YP_003020308.1 KEGG: gbm:Gbem_0454 hypothetical protein YP_003020309.1 KEGG: gbm:Gbem_0455 hypothetical protein YP_003020310.1 KEGG: gbm:Gbem_0456 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_003020311.1 Enables the enzymatic reduction of mercuric ions to elemental mercury YP_003020312.1 PFAM: SNARE associated Golgi protein; KEGG: gbm:Gbem_0458 SNARE associated Golgi protein YP_003020313.1 KEGG: gbm:Gbem_0459 pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_003020314.1 PFAM: transketolase; transketolase domain protein; KEGG: gbm:Gbem_0460 transketolase YP_003020315.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: gbm:Gbem_0461 catalytic domain of components of various dehydrogenase complexes YP_003020316.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: gur:Gura_2895 Glu/Leu/Phe/Val dehydrogenase, C terminal YP_003020317.1 PFAM: rhomboid family protein; KEGG: gbm:Gbem_0462 rhomboid family protein YP_003020318.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_003020319.1 TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: gbm:Gbem_0464 uracil-xanthine permease YP_003020320.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: gbm:Gbem_0465 bacterioferritin YP_003020321.1 KEGG: gbm:Gbem_0466 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_003020322.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0467 methyl-accepting chemotaxis sensory transducer YP_003020323.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: gbm:Gbem_0468 acetyl-CoA hydrolase/transferase YP_003020324.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; KEGG: gbm:Gbem_0469 GAF sensor signal transduction histidine kinase YP_003020325.1 TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase; KEGG: gbm:Gbem_0470 tyrosine recombinase XerC YP_003020326.1 PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0471 protein of unknown function DUF362 YP_003020327.1 PFAM: lytic transglycosylase catalytic; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: gbm:Gbem_0472 lytic transglycosylase catalytic protein YP_003020328.1 KEGG: gbm:Gbem_0473 hypothetical protein YP_003020329.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: gbm:Gbem_0474 GTP-binding protein TypA YP_003020330.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; SMART: hypothetical protein; KEGG: gbm:Gbem_0475 outer membrane assembly lipoprotein YfiO YP_003020331.1 KEGG: gbm:Gbem_0476 response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; response regulator receiver; hypothetical protein; PAS fold domain protein; SMART: GGDEF domain containing protein; response regulator receiver; PAS domain containing protein YP_003020332.1 PFAM: RNA methylase; THUMP domain protein; KEGG: gbm:Gbem_0477 RNA methylase YP_003020333.1 PFAM: protein of unknown function DUF34; KEGG: gbm:Gbem_0478 protein of unknown function DUF34 YP_003020334.1 PFAM: protein of unknown function DUF164; KEGG: gbm:Gbem_0479 protein of unknown function DUF164 YP_003020335.1 KEGG: gbm:Gbem_0480 hypothetical protein YP_003020336.1 KEGG: gbm:Gbem_0481 hypothetical protein YP_003020337.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_003020338.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: gbm:Gbem_0483 S-adenosyl-methyltransferase MraW YP_003020339.1 TIGRFAM: cell division protein FtsL; PFAM: septum formation initiator; KEGG: gbm:Gbem_0484 cell division protein FtsL YP_003020340.1 KEGG: gbm:Gbem_0485 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; Penicillin-binding protein dimerisation domain; SMART: PASTA domain containing protein YP_003020341.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_003020342.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: gbm:Gbem_0487 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_003020343.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_003020344.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: gbm:Gbem_0489 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_003020345.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: gbm:Gbem_0490 cell division protein FtsW YP_003020346.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_003020347.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_003020348.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_003020349.1 KEGG: gbm:Gbem_0494 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_003020350.1 PFAM: polypeptide-transport-associated domain protein FtsQ-type; cell division protein FtsQ; KEGG: gbm:Gbem_0495 polypeptide-transport-associated domain protein FtsQ-type YP_003020351.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: gbm:Gbem_0496 cell division protein FtsA YP_003020352.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_003020353.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: gbm:Gbem_0498 GAF sensor signal transduction histidine kinase YP_003020354.1 KEGG: gbm:Gbem_0499 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003020355.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: gbm:Gbem_0500 UMUC domain protein DNA-repair protein YP_003020356.1 KEGG: gbm:Gbem_0501 transcriptional repressor, LexA family; TIGRFAM: LexA repressor; PFAM: peptidase S24 and S26 domain protein; LexA DNA-binding domain protein YP_003020357.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: geo:Geob_3305 antibiotic biosynthesis monooxygenase YP_003020358.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: gme:Gmet_0805 flavin reductase-like, FMN-binding YP_003020359.1 PFAM: NADPH-dependent FMN reductase; KEGG: gur:Gura_3523 NADPH-dependent FMN reductase YP_003020360.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: geo:Geob_0528 ArsR family transcriptional regulator YP_003020361.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: glo:Glov_1891 methyl-accepting chemotaxis sensory transducer YP_003020362.1 PFAM: beta-lactamase; KEGG: prw:PsycPRwf_0722 Zn-dependent hydrolase of the beta-lactamase fold-like protein YP_003020363.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA2247 AraC family transcription regulator YP_003020364.1 PFAM: nitroreductase; KEGG: gbm:Gbem_0507 hypothetical protein YP_003020365.1 KEGG: gbm:Gbem_0509 hypothetical protein YP_003020366.1 KEGG: gbm:Gbem_0510 hypothetical protein YP_003020367.1 PFAM: xylose isomerase; SMART: AP endonuclease family 2; KEGG: gbm:Gbem_0511 xylose isomerase domain protein TIM barrel YP_003020369.1 KEGG: gbm:Gbem_0517 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_003020370.1 KEGG: gbm:Gbem_0518 hypothetical protein YP_003020371.1 KEGG: gbm:Gbem_0519 hypothetical protein YP_003020372.1 KEGG: gbm:Gbem_0522 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003020373.1 KEGG: gbm:Gbem_0524 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003020374.1 PFAM: protein of unknown function DUF748; KEGG: gbm:Gbem_0525 protein of unknown function DUF748 YP_003020375.1 PFAM: DoxX family protein; KEGG: gbm:Gbem_0526 DoxX family protein YP_003020376.1 KEGG: gbm:Gbem_0527 hypothetical protein YP_003020377.1 PFAM: protein of unknown function DUF922; KEGG: gbm:Gbem_0530 protein of unknown function DUF922 YP_003020378.1 KEGG: gbm:Gbem_0531 collagen triple helix repeat YP_003020379.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: gbm:Gbem_0533 metal dependent phosphohydrolase YP_003020380.1 PFAM: protein of unknown function DUF399; KEGG: gbm:Gbem_0534 protein of unknown function DUF399 YP_003020381.1 KEGG: gbm:Gbem_0535 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003020382.1 KEGG: gbm:Gbem_0536 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein YP_003020383.1 KEGG: gbm:Gbem_0538 hypothetical protein YP_003020384.1 KEGG: gbm:Gbem_0539 hypothetical protein YP_003020385.1 PFAM: xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: gbm:Gbem_0540 xanthine/uracil/vitamin C permease YP_003020386.1 PFAM: phosphoribosyltransferase; KEGG: gbm:Gbem_0541 phosphoribosyltransferase YP_003020387.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; KEGG: gbm:Gbem_0542 amino acid adenylation domain protein YP_003020388.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: gbm:Gbem_0543 acyl-CoA dehydrogenase domain protein YP_003020389.1 PFAM: arginase/agmatinase/formiminoglutamase; KEGG: gbm:Gbem_0545 arginase/agmatinase/formiminoglutamase YP_003020390.1 KEGG: gbm:Gbem_0546 hypothetical protein YP_003020391.1 KEGG: gbm:Gbem_0547 acyl carrier protein YP_003020392.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_0548 radical SAM protein YP_003020393.1 KEGG: gbm:Gbem_0549 hypothetical protein YP_003020394.1 PFAM: ThiJ/PfpI domain protein; KEGG: gbm:Gbem_0550 ThiJ/PfpI domain protein YP_003020395.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: geo:Geob_0792 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003020396.1 KEGG: gbm:Gbem_0551 hypothetical protein YP_003020397.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_003020398.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_003020399.1 KEGG: gbm:Gbem_0554 hypothetical protein YP_003020400.1 KEGG: gbm:Gbem_0555 hypothetical protein YP_003020401.1 KEGG: gbm:Gbem_0556 hypothetical protein YP_003020402.1 KEGG: gbm:Gbem_0557 hypothetical protein YP_003020403.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gbm:Gbem_0558 methylmalonyl-CoA epimerase YP_003020404.1 KEGG: gur:Gura_0654 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_003020405.1 KEGG: gbm:Gbem_0560 hypothetical protein YP_003020406.1 PFAM: biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; KEGG: gbm:Gbem_0561 biotin/lipoyl attachment domain-containing protein YP_003020407.1 PFAM: carboxyl transferase; KEGG: gbm:Gbem_0562 carboxyl transferase YP_003020408.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0563 protein of unknown function DUF224 cysteine-rich region domain protein YP_003020409.1 PFAM: FAD linked oxidase; KEGG: gbm:Gbem_0564 FAD linked oxidase YP_003020410.1 KEGG: gbm:Gbem_0565 hypothetical protein YP_003020411.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_003020412.1 KEGG: gbm:Gbem_0567 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1 YP_003020413.1 PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_0568 peptidase M48 Ste24p YP_003020414.1 KEGG: gbm:Gbem_0569 nucleic acid binding, OB-fold, tRNA/helicase-type YP_003020415.1 KEGG: gbm:Gbem_0570 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA YP_003020416.1 KEGG: gbm:Gbem_0571 hypothetical protein YP_003020417.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_003020418.1 TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: gbm:Gbem_0573 RNA polymerase, sigma 70 family subunit YP_003020419.1 PFAM: protein of unknown function DUF205; KEGG: gbm:Gbem_0574 protein of unknown function DUF205 YP_003020420.1 PFAM: DoxX family protein; KEGG: gbm:Gbem_0575 DoxX family protein YP_003020421.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: gbm:Gbem_0576 rhodanese domain protein YP_003020422.1 KEGG: gbm:Gbem_0577 hypothetical protein YP_003020423.1 PFAM: metallophosphoesterase; KEGG: gbm:Gbem_0578 metallophosphoesterase YP_003020424.1 PFAM: protein of unknown function UPF0153; KEGG: gbm:Gbem_0579 protein of unknown function UPF0153 YP_003020425.1 PFAM: penicillin-binding protein transpeptidase; KEGG: gbm:Gbem_0580 penicillin-binding protein transpeptidase YP_003020426.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: gbm:Gbem_0581 ribonuclease BN YP_003020427.1 KEGG: gbm:Gbem_0582 hypothetical protein YP_003020428.1 KEGG: gbm:Gbem_0583 hypothetical protein YP_003020429.1 KEGG: gbm:Gbem_0584 hypothetical protein YP_003020430.1 KEGG: gbm:Gbem_0585 hypothetical protein YP_003020431.1 KEGG: gbm:Gbem_0586 hypothetical protein YP_003020432.1 TIGRFAM: general secretion pathway protein L; KEGG: gbm:Gbem_0587 general secretion pathway protein L YP_003020433.1 PFAM: general secretion pathway protein K; KEGG: gbm:Gbem_0588 general secretion pathway protein K YP_003020434.1 KEGG: gbm:Gbem_0589 N-terminal methylation protein YP_003020435.1 TIGRFAM: general secretion pathway protein I; KEGG: gbm:Gbem_0590 hypothetical protein YP_003020436.1 TIGRFAM: general secretion pathway protein H; KEGG: gbm:Gbem_0591 hypothetical protein YP_003020437.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: gbm:Gbem_0592 general secretion pathway protein G YP_003020438.1 PFAM: DNA polymerase beta domain protein region; KEGG: gme:Gmet_0216 hypothetical protein YP_003020439.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: gbm:Gbem_0593 general secretion pathway protein F YP_003020440.1 KEGG: gbm:Gbem_0594 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; general secretory system protein E; SMART: AAA ATPase YP_003020441.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: gbm:Gbem_0595 general secretion pathway protein D YP_003020442.1 PFAM: S23 ribosomal protein; KEGG: gbm:Gbem_0596 S23 ribosomal protein YP_003020443.1 KEGG: gbm:Gbem_0597 type II secretory pathway component PulC-like protein YP_003020444.1 PFAM: purine or other phosphorylase family 1; KEGG: gbm:Gbem_0598 purine or other phosphorylase family 1 YP_003020445.1 PFAM: protein of unknown function DUF191; KEGG: gbm:Gbem_0599 protein of unknown function DUF191 YP_003020446.1 KEGG: gbm:Gbem_0600 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_003020447.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; KEGG: gbm:Gbem_0601 lipoprotein A YP_003020448.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_0602 tetratricopeptide TPR_2 repeat protein YP_003020449.1 PFAM: heat shock protein Hsp20; KEGG: gbm:Gbem_0603 heat shock protein HSP20 YP_003020450.1 KEGG: gbm:Gbem_0604 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; ATPase AAA YP_003020451.1 KEGG: gbm:Gbem_0605 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003020452.1 PFAM: protein of unknown function UPF0047; KEGG: gbm:Gbem_0606 protein of unknown function UPF0047 YP_003020453.1 KEGG: gbm:Gbem_0607 hypothetical protein YP_003020454.1 KEGG: gbm:Gbem_0608 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_003020455.1 SMART: TRASH domain protein; KEGG: gbm:Gbem_0609 TRASH domain protein YP_003020456.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_003020457.1 PFAM: SNARE associated Golgi protein; KEGG: gbm:Gbem_0611 SNARE associated Golgi protein YP_003020458.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_003020459.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions YP_003020460.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: gbm:Gbem_0614 nitrite and sulphite reductase 4Fe-4S region YP_003020461.1 PFAM: PP-loop domain protein; KEGG: gbm:Gbem_0615 PP-loop domain protein YP_003020462.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0616 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003020463.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: gbm:Gbem_0617 transcriptional regulator, TraR/DksA family YP_003020464.1 KEGG: gbm:Gbem_0618 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003020465.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_003020466.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: gbm:Gbem_0620 outer membrane lipoprotein carrier protein LolA YP_003020467.1 PFAM: CheC domain protein; KEGG: gbm:Gbem_0621 chemotaxis protein CheC YP_003020468.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: gbm:Gbem_0622 chemotaxis protein CheA YP_003020469.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0623 response regulator receiver protein YP_003020470.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_0624 chemotaxis protein CheW YP_003020471.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0625 methyl-accepting chemotaxis sensory transducer YP_003020472.1 KEGG: gbm:Gbem_0626 chemotaxis protein CheR; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003020473.1 PFAM: aminotransferase class I and II; KEGG: gbm:Gbem_0627 aminotransferase class I and II YP_003020474.1 KEGG: gbm:Gbem_0628 hypothetical protein YP_003020475.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gbm:Gbem_0629 glyoxalase/bleomycin resistance protein/dioxygenase YP_003020476.1 KEGG: gbm:Gbem_0630 thiolase YP_003020477.1 KEGG: gbm:Gbem_0631 hypothetical protein YP_003020479.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_0633 phage repressor YP_003020480.1 KEGG: gbm:Gbem_0634 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003020481.1 KEGG: gbm:Gbem_0635 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_003020482.1 PFAM: protein of unknown function DUF116; KEGG: gbm:Gbem_0636 protein of unknown function DUF116 YP_003020483.1 KEGG: gbm:Gbem_0637 polysaccharide deacetylase YP_003020484.1 KEGG: gbm:Gbem_0638 hypothetical protein YP_003020485.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: gbm:Gbem_0639 response regulator receiver modulated metal dependent phosphohydrolase YP_003020486.1 TIGRFAM: mercuric reductase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbm:Gbem_0640 mercuric reductase YP_003020487.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003020488.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003020489.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003020490.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_0645 cold-shock DNA-binding domain protein YP_003020491.1 PFAM: protein of unknown function DUF327; KEGG: gbm:Gbem_0646 hypothetical protein YP_003020492.1 KEGG: gbm:Gbem_0647 extracellular solute-binding protein, family 1 YP_003020493.1 KEGG: gbm:Gbem_0648 extracellular solute-binding protein, family 1 YP_003020494.1 KEGG: gbm:Gbem_0649 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003020495.1 PFAM: fumarylacetoacetate hydrolase; KEGG: gbm:Gbem_0650 fumarylacetoacetate hydrolase YP_003020496.1 KEGG: gbm:Gbem_0651 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003020497.1 KEGG: gbm:Gbem_0652 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003020498.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_003020499.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: gbm:Gbem_0654 thiamine biosynthesis protein ThiS YP_003020500.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0655 integral membrane sensor signal transduction histidine kinase YP_003020501.1 PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: gbm:Gbem_0656 transcriptional regulator, IclR family YP_003020502.1 KEGG: gbm:Gbem_0657 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003020503.1 PFAM: protein of unknown function DUF342; KEGG: gur:Gura_3642 hypothetical protein YP_003020504.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbm:Gbem_0659 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003020505.1 PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_0660 molybdopterin oxidoreductase YP_003020506.1 KEGG: gbm:Gbem_0661 hypothetical protein YP_003020507.1 KEGG: gbm:Gbem_0662 hypothetical protein YP_003020508.1 KEGG: gbm:Gbem_0663 histidine kinase, HAMP region YP_003020509.1 KEGG: gbm:Gbem_0664 polysulphide reductase-like protein YP_003020510.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0665 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003020511.1 KEGG: gbm:Gbem_0666 hypothetical protein YP_003020512.1 KEGG: gbm:Gbem_0667 hypothetical protein YP_003020513.1 KEGG: gbm:Gbem_0668 hypothetical protein YP_003020514.1 PFAM: response regulator receiver; KEGG: gbm:Gbem_0669 response regulator receiver protein YP_003020515.1 KEGG: gbm:Gbem_0670 hypothetical protein YP_003020516.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_0671 Fis family transcriptional regulator YP_003020517.1 KEGG: gbm:Gbem_0672 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein YP_003020518.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_0673 Fis family transcriptional regulator YP_003020519.1 KEGG: gbm:Gbem_0674 hypothetical protein YP_003020520.1 KEGG: gbm:Gbem_0675 response regulator receiver protein YP_003020521.1 KEGG: gbm:Gbem_0676 multihaem cytochrome YP_003020522.1 PFAM: cytochrome B561; KEGG: gbm:Gbem_0677 cytochrome b561 YP_003020523.1 KEGG: gbm:Gbem_0678 hypothetical protein YP_003020524.1 KEGG: gbm:Gbem_0679 cytochrome C family protein YP_003020525.1 PFAM: response regulator receiver; heat shock protein DnaJ domain protein; SMART: response regulator receiver; Tetratricopeptide domain protein; KEGG: gbm:Gbem_0681 response regulator receiver protein YP_003020526.1 PFAM: aminodeoxychorismate lyase; KEGG: gbm:Gbem_0682 aminodeoxychorismate lyase YP_003020527.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gbm:Gbem_0683 alpha amylase catalytic region YP_003020528.1 catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA YP_003020529.1 KEGG: gbm:Gbem_0685 hypothetical protein YP_003020530.1 PFAM: peptidase M16 domain protein; KEGG: gbm:Gbem_0686 peptidase M16 domain protein YP_003020531.1 PFAM: peptidase M16 domain protein; KEGG: gbm:Gbem_0687 peptidase M16 domain protein YP_003020532.1 KEGG: gbm:Gbem_0689 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATPase AAA; peptidase S16 lon domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; ATPase AAA YP_003020533.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_0690 ABC transporter YP_003020534.1 PFAM: HNH endonuclease; KEGG: gbm:Gbem_0691 HNH endonuclease YP_003020535.1 TIGRFAM: metal dependent phophohydrolase; KEGG: gbm:Gbem_0692 metal dependent phophohydrolase YP_003020536.1 KEGG: gbm:Gbem_0693 hypothetical protein YP_003020537.1 KEGG: gbm:Gbem_0694 hypothetical protein YP_003020538.1 PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: gbm:Gbem_0695 peptidoglycan-binding LysM YP_003020539.1 KEGG: gbm:Gbem_0696 rubrerythrin YP_003020540.1 PFAM: amidohydrolase 2; KEGG: gbm:Gbem_0697 amidohydrolase 2 YP_003020541.1 KEGG: gbm:Gbem_0698 hypothetical protein YP_003020542.1 KEGG: gbm:Gbem_0699 hypothetical protein YP_003020544.1 KEGG: gbm:Gbem_0700 ribonuclease, Rne/Rng family; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003020545.1 KEGG: gbm:Gbem_0701 hypothetical protein YP_003020546.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_003020547.1 PFAM: protein of unknown function DUF190; KEGG: gbm:Gbem_0703 protein of unknown function DUF190 YP_003020548.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_003020549.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: gbm:Gbem_0705 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_003020550.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: gme:Gmet_2764 dihydrolipoamide dehydrogenase YP_003020551.1 KEGG: gbm:Gbem_0707 lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_003020552.1 KEGG: gbm:Gbem_0708 peptidase S16, lon domain protein YP_003020553.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: gbm:Gbem_0709 diacylglycerol kinase catalytic region YP_003020554.1 PFAM: response regulator receiver; type IV pilus assembly PilZ; SMART: response regulator receiver; KEGG: gbm:Gbem_0710 response regulator receiver modulated PilZ sensor protein YP_003020555.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_0711 glycosyl transferase family 2 YP_003020556.1 PFAM: response regulator receiver; CheW domain protein; SMART: response regulator receiver; CheW domain protein; KEGG: gbm:Gbem_0712 response regulator receiver modulated chemotaxis protein CheW YP_003020557.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_0713 molybdopterin oxidoreductase YP_003020559.1 PFAM: chromate transporter; KEGG: gbm:Gbem_0714 chromate transporter YP_003020560.1 PFAM: chromate transporter; KEGG: gbm:Gbem_0715 chromate transporter YP_003020561.1 KEGG: gbm:Gbem_0716 hypothetical protein YP_003020562.1 KEGG: gbm:Gbem_0717 type IV pilus assembly PilZ YP_003020563.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: gbm:Gbem_0718 GreA/GreB family elongation factor YP_003020564.1 KEGG: gbm:Gbem_0719 hypothetical protein YP_003020565.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_0720 type IV pilus assembly PilZ YP_003020566.1 PFAM: protein of unknown function DUF833; KEGG: gbm:Gbem_0721 protein of unknown function DUF833 YP_003020567.1 KEGG: gbm:Gbem_0722 hypothetical protein YP_003020568.1 PFAM: protein of unknown function DUF534; KEGG: gbm:Gbem_0723 protein of unknown function DUF534 YP_003020569.1 PFAM: inner-membrane translocator; KEGG: gbm:Gbem_0724 inner-membrane translocator YP_003020570.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_0725 ABC transporter YP_003020571.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_003020572.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_003020573.1 KEGG: rfr:Rfer_2480 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003020574.1 KEGG: geo:Geob_1841 hypothetical protein YP_003020575.1 KEGG: gbm:Gbem_0729 hypothetical protein YP_003020576.1 KEGG: hypothetical protein YP_003020577.1 KEGG: gbm:Gbem_1473 hypothetical protein YP_003020578.1 KEGG: gbm:Gbem_0731 response regulator receiver modulated serine phosphatase YP_003020579.1 KEGG: gbm:Gbem_0732 hypothetical protein YP_003020580.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_003020581.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_003020582.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gbm:Gbem_0735 rubredoxin-type Fe(Cys)4 protein YP_003020583.1 PFAM: aminotransferase class V; KEGG: gbm:Gbem_0736 aminotransferase class V YP_003020584.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_003020585.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0738 response regulator receiver protein YP_003020586.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0739 response regulator receiver protein YP_003020587.1 PFAM: CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: gbm:Gbem_0740 chemotaxis protein CheA YP_003020588.1 SMART: ATPase AAA; KEGG: gbm:Gbem_0741 ATPase AAA YP_003020589.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_0742 chemotaxis protein CheW YP_003020590.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0743 response regulator receiver protein YP_003020591.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_0744 chemotaxis protein CheW YP_003020592.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0745 response regulator receiver protein YP_003020593.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: gbm:Gbem_0746 PBS lyase heat domain protein repeat-containing protein YP_003020594.1 KEGG: gbm:Gbem_0747 chemotaxis protein CheR; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003020595.1 PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0748 response regulator receiver modulated CheB methylesterase YP_003020596.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: gbm:Gbem_0749 GAF sensor protein YP_003020597.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0750 response regulator receiver protein YP_003020598.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_003020599.1 KEGG: gbm:Gbem_0752 hypothetical protein YP_003020600.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: nucleotidyltransferase substrate binding protein HI0074; KEGG: gbm:Gbem_0753 nucleotidyltransferase substrate binding protein, HI0074 family YP_003020601.1 PFAM: DNA polymerase beta domain protein region; KEGG: gbm:Gbem_0754 DNA polymerase beta domain protein region YP_003020602.1 TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; KEGG: gbm:Gbem_0755 DNA polymerase III subunit delta YP_003020603.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_003020604.1 PFAM: methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; methyltransferase type 12; KEGG: gbm:Gbem_0757 methyltransferase type 11 YP_003020605.1 KEGG: gbm:Gbem_0758 hypothetical protein YP_003020606.1 KEGG: glo:Glov_1177 cytochrome C family protein YP_003020607.1 KEGG: gbm:Gbem_0759 hypothetical protein YP_003020608.1 KEGG: gbm:Gbem_0760 hypothetical protein YP_003020609.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_003020610.1 PFAM: protein of unknown function DUF151; KEGG: gbm:Gbem_0762 protein of unknown function DUF151 YP_003020611.1 PFAM: peptidase M42 family protein; peptidase M20; KEGG: gbm:Gbem_0763 peptidase M42 family protein YP_003020613.1 KEGG: gbm:Gbem_0764 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; hypothetical protein; SMART: hypothetical protein YP_003020614.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003020615.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gbm:Gbem_0766 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_003020616.1 PFAM: anti-sigma-28 factor FlgM family protein; KEGG: gbm:Gbem_0767 anti-sigma-28 factor, FlgM YP_003020617.1 KEGG: bpt:Bpet4288 hypothetical protein YP_003020618.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: ppd:Ppro_2277 DNA repair protein RadC YP_003020619.1 KEGG: ppd:Ppro_2279 hypothetical protein YP_003020620.1 KEGG: mfa:Mfla_1177 XRE family transcriptional regulator YP_003020622.1 PFAM: phosphoadenosine phosphosulfate reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mmw:Mmwyl1_2969 phosphoadenosine phosphosulfate reductase YP_003020625.1 KEGG: tmz:Tmz1t_0301 ATP-dependent Lon protease YP_003020626.1 KEGG: ppd:Ppro_1863 hypothetical protein YP_003020627.1 KEGG: nha:Nham_0312 hypothetical protein YP_003020628.1 KEGG: ppd:Ppro_2296 hypothetical protein YP_003020629.1 PFAM: prophage CP4-57 regulator; KEGG: aeh:Mlg_1062 phage transcriptional regulator, AlpA YP_003020630.1 KEGG: ppd:Ppro_3678 transposase and inactivated derivatives YP_003020631.1 KEGG: gsu:GSU1362 hypothetical protein YP_003020632.1 KEGG: gsu:GSU1363 RNA-directed DNA polymerase YP_003020633.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: geo:Geob_0718 transcriptional regulator, XRE family YP_003020634.1 KEGG: gbm:Gbem_0497 cell division protein FtsZ YP_003020636.1 PFAM: integrase family protein; KEGG: ppd:Ppro_3121 phage integrase family protein YP_003020638.1 KEGG: xfn:XfasM23_2251 hypothetical protein YP_003020639.1 KEGG: ecv:APECO1_O1CoBM110 hypothetical protein YP_003020641.1 KEGG: glo:Glov_2566 hypothetical protein YP_003020642.1 PFAM: integrase family protein; KEGG: gsu:GSU2119 integrative genetic element Gsu56, integrase YP_003020643.1 KEGG: glo:Glov_2835 hypothetical protein YP_003020644.1 KEGG: gbm:Gbem_0769 hypothetical protein YP_003020645.1 KEGG: gbm:Gbem_3037 hypothetical protein YP_003020646.1 KEGG: eca:ECA3425 lipoprotein YP_003020647.1 SMART: ankyrin; KEGG: esa:ESA_03914 hypothetical protein YP_003020648.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ppd:Ppro_3808 XRE family transcriptional regulator YP_003020649.1 PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: gsu:GSU1359 helicase YP_003020650.1 SMART: HNH nuclease; KEGG: geo:Geob_2811 HNH endonuclease YP_003020651.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: geo:Geob_0091 filamentation induced by cAMP protein Fic YP_003020652.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: gbm:Gbem_0773 phosphoesterase PA-phosphatase related YP_003020653.1 PFAM: 5'-3' exonuclease; ribonuclease H; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: gbm:Gbem_0774 ribonuclease H YP_003020654.1 PFAM: protein of unknown function DUF1555; KEGG: gsu:GSU1943 hypothetical protein YP_003020655.1 KEGG: gbm:Gbem_0777 hypothetical protein YP_003020656.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gur:Gura_3406 ABC transporter YP_003020657.1 PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0230 protein of unknown function DUF214 YP_003020658.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gur:Gura_3408 RND family efflux transporter MFP subunit YP_003020659.1 PFAM: outer membrane efflux protein; KEGG: gur:Gura_3409 outer membrane efflux protein YP_003020660.1 PFAM: regulatory protein TetR; KEGG: geo:Geob_0730 TetR family transcriptional regulator YP_003020661.1 PFAM: AraC-type transcriptional regulator; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gbm:Gbem_0780 AraC family transcriptional regulator YP_003020662.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gbm:Gbem_0781 iron-containing alcohol dehydrogenase YP_003020663.1 PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_0782 major facilitator superfamily MFS_1 YP_003020664.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: gbm:Gbem_0786 methyltransferase type 12 YP_003020665.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: gbm:Gbem_0787 metal dependent phosphohydrolase YP_003020666.1 KEGG: gbm:Gbem_0788 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_003020667.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: gbm:Gbem_0794 transcriptional regulator, GntR family YP_003020668.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: gbm:Gbem_0795 acetyl-CoA hydrolase/transferase YP_003020669.1 KEGG: gbm:Gbem_0796 hypothetical protein YP_003020670.1 KEGG: gbm:Gbem_0797 hypothetical protein YP_003020671.1 KEGG: gme:Gmet_0773 cyclic nucleotide-binding domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; SMART: GGDEF domain containing protein; cyclic nucleotide-binding YP_003020672.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0799 response regulator receiver protein YP_003020673.1 PFAM: protein of unknown function DUF1003; KEGG: geo:Geob_0293 protein of unknown function DUF1003 YP_003020674.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_0802 glycosyl transferase family 2 YP_003020675.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: gbm:Gbem_0803 GntR family transcriptional regulator YP_003020676.1 KEGG: gbm:Gbem_0804 hypothetical protein YP_003020677.1 KEGG: gbm:Gbem_0805 hypothetical protein YP_003020678.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_0806 protein of unknown function DUF6 transmembrane YP_003020679.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: gbm:Gbem_3392 methyl-accepting chemotaxis sensory transducer YP_003020680.1 KEGG: gbm:Gbem_3391 hypothetical protein YP_003020681.1 PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_3390 peptidase M48 Ste24p YP_003020682.1 KEGG: gbm:Gbem_3389 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003020683.1 KEGG: gbm:Gbem_3388 hypothetical protein YP_003020684.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_3387 radical SAM protein YP_003020685.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_3386 radical SAM protein YP_003020686.1 KEGG: gbm:Gbem_3385 protein-disulfide isomerase YP_003020687.1 PFAM: acylphosphatase; KEGG: gbm:Gbem_3384 acylphosphatase YP_003020688.1 KEGG: gbm:Gbem_3383 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003020690.1 KEGG: gbm:Gbem_3381 hypothetical protein YP_003020691.1 KEGG: gbm:Gbem_3380 hypothetical protein YP_003020692.1 KEGG: gbm:Gbem_3379 polyheme membrane-associated cytochrome C YP_003020693.1 KEGG: gbm:Gbem_3378 hypothetical protein YP_003020694.1 KEGG: gbm:Gbem_3377 hypothetical protein YP_003020695.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: gbm:Gbem_3376 glycerol kinase YP_003020696.1 PFAM: FAD dependent oxidoreductase; KEGG: gbm:Gbem_3375 FAD dependent oxidoreductase YP_003020697.1 KEGG: gbm:Gbem_3374 hypothetical protein YP_003020698.1 KEGG: gbm:Gbem_3373 cytochrome C family protein YP_003020699.1 KEGG: gbm:Gbem_3372 hypothetical protein YP_003020700.1 KEGG: gbm:Gbem_3371 hypothetical protein YP_003020701.1 KEGG: gbm:Gbem_3370 hypothetical protein YP_003020702.1 KEGG: gbm:Gbem_3369 hypothetical protein YP_003020703.1 PFAM: NLP/P60 protein; KEGG: gbm:Gbem_3368 NLP/P60 protein YP_003020704.1 PFAM: NADPH-dependent FMN reductase; KEGG: gbm:Gbem_3367 NADPH-dependent FMN reductase YP_003020705.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_3366 histidine kinase YP_003020706.1 KEGG: cps:CPS_2373 hypothetical protein YP_003020707.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM protein; KEGG: gbm:Gbem_3363 hopanoid biosynthesis associated radical SAM protein HpnH YP_003020708.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_003020709.1 TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; NmrA family protein; KEGG: gbm:Gbem_3361 hopanoid-associated sugar epimerase YP_003020710.1 KEGG: gbm:Gbem_3360 squalene-hopene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: prenyltransferase/squalene oxidase YP_003020711.1 TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: gbm:Gbem_3359 hopanoid biosynthesis associated RND transporter like protein HpnN YP_003020712.1 PFAM: rRNA methylase; methyltransferase type 12; KEGG: gbm:Gbem_3358 rRNA methylase YP_003020713.1 TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; KEGG: gbm:Gbem_3357 ceramide glucosyltransferase YP_003020714.1 KEGG: gbm:Gbem_3356 hypothetical protein YP_003020715.1 PFAM: protein of unknown function DUF208; KEGG: gbm:Gbem_3355 protein of unknown function DUF208 YP_003020716.1 KEGG: gbm:Gbem_3354 hypothetical protein YP_003020717.1 KEGG: gbm:Gbem_3353 hypothetical protein YP_003020718.1 KEGG: gbm:Gbem_3352 hypothetical protein YP_003020719.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3351 methyl-accepting chemotaxis sensory transducer YP_003020720.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_003020721.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; KEGG: gbm:Gbem_3349 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_003020722.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: gbm:Gbem_3348 FolC bifunctional protein YP_003020723.1 PFAM: organic solvent tolerance protein; OstA family protein; KEGG: gbm:Gbem_3347 organic solvent tolerance protein YP_003020724.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: gbm:Gbem_3346 dTDP-glucose 4,6-dehydratase YP_003020725.1 KEGG: gbm:Gbem_3345 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase YP_003020726.1 PFAM: mannose-6-phosphate isomerase type II; Cupin 2 conserved barrel domain protein; KEGG: gbm:Gbem_3344 mannose-6-phosphate isomerase type II YP_003020727.1 PFAM: Na+/H+ antiporter NhaA; KEGG: gbm:Gbem_3343 Na+/H+ antiporter NhaA YP_003020728.1 PFAM: nucleotidyl transferase; KEGG: gbm:Gbem_3342 nucleotidyl transferase YP_003020729.1 KEGG: gbm:Gbem_3341 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_003020730.1 KEGG: gur:Gura_3278 hypothetical protein YP_003020731.1 PFAM: class II aldolase/adducin family protein; KEGG: gbm:Gbem_3340 class II aldolase/adducin family protein YP_003020732.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: gbm:Gbem_3339 integral membrane protein MviN YP_003020733.1 KEGG: gbm:Gbem_3338 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_003020734.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_003020735.1 PFAM: cytochrome C class I; KEGG: gbm:Gbem_3336 cytochrome c class I YP_003020736.1 KEGG: gbm:Gbem_3335 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: queuine/other tRNA-ribosyltransferase YP_003020737.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: gbm:Gbem_3334 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_003020738.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_003020739.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3332 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003020740.1 PFAM: integral membrane protein TerC; KEGG: sat:SYN_01926 tellurium resistance protein YP_003020741.1 KEGG: gbm:Gbem_3330 hypothetical protein YP_003020742.1 PFAM: formate/nitrite transporter; KEGG: gsu:GSU0234 FNT family protein YP_003020743.1 KEGG: gbm:Gbem_3328 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; hypothetical protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003020744.1 KEGG: gbm:Gbem_3327 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003020745.1 KEGG: gbm:Gbem_3326 hypothetical protein YP_003020746.1 PFAM: rubrerythrin; KEGG: gbm:Gbem_3325 rubrerythrin YP_003020747.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: gbm:Gbem_3324 exopolysaccharide synthesis ExoD YP_003020748.1 PFAM: cupin; KEGG: gbm:Gbem_3323 cupin 2 conserved barrel domain protein YP_003020749.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: gbm:Gbem_3322 tRNA/rRNA methyltransferase (SpoU) YP_003020750.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003020751.1 KEGG: gbm:Gbem_3320 hypothetical protein YP_003020752.1 PFAM: late embryogenesis abundant protein 2; SMART: Water stress and Hypersensitive response domain protein; KEGG: gbm:Gbem_3319 late embryogenesis abundant protein 2 YP_003020753.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3318 ABC transporter YP_003020754.1 PFAM: Chromosomal replication initiator DnaA; KEGG: gbm:Gbem_3317 chromosomal replication initiator DnaA YP_003020755.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_003020756.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_003020757.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_003020758.1 PFAM: protein of unknown function DUF28; KEGG: gbm:Gbem_3313 protein of unknown function DUF28 YP_003020759.1 KEGG: gbm:Gbem_3312 hypothetical protein YP_003020760.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: gbm:Gbem_3311 NAD(P)H quinone oxidoreductase, PIG3 family YP_003020761.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: gbm:Gbem_3310 multiple antibiotic resistance (MarC)-related protein YP_003020763.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_3309 glycosyl transferase family 2 YP_003020764.1 PFAM: NDP-hexose 23-dehydratase; KEGG: gbm:Gbem_3308 NDP-hexose 23-dehydratase YP_003020765.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gbm:Gbem_3307 DegT/DnrJ/EryC1/StrS aminotransferase YP_003020766.1 PFAM: methyltransferase type 11; methionine biosynthesis MetW protein; methyltransferase type 12; KEGG: gbm:Gbem_3306 methyltransferase type 11 YP_003020767.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_3305 tetratricopeptide TPR_2 repeat protein YP_003020768.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_3304 radical SAM protein YP_003020769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3303 ABC transporter YP_003020770.1 PFAM: methylenetetrahydrofolate reductase; KEGG: gbm:Gbem_3302 methylenetetrahydrofolate reductase YP_003020771.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: gbm:Gbem_3300 hypothetical protein YP_003020772.1 KEGG: gbm:Gbem_3299 hypothetical protein YP_003020773.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3298 methyl-accepting chemotaxis sensory transducer YP_003020774.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3297 methyl-accepting chemotaxis sensory transducer YP_003020775.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_3296 transcriptional regulator YP_003020776.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gsu:GSU3119 sensor histidine kinase YP_003020777.1 KEGG: gbm:Gbem_3294 hypothetical protein YP_003020778.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: gbm:Gbem_3293 DEAD/DEAH box helicase YP_003020779.1 TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: gbm:Gbem_3292 desulfoferrodoxin YP_003020780.1 KEGG: gbm:Gbem_3291 hypothetical protein YP_003020781.1 PFAM: stress responsive alpha-beta barrel domain protein; KEGG: gbm:Gbem_3290 stress responsive alpha-beta barrel domain protein YP_003020782.1 PFAM: SEC-C motif domain protein; KEGG: gbm:Gbem_3289 sec-C motif domain protein YP_003020783.1 KEGG: gbm:Gbem_3288 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003020784.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003020785.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_3286 Fis family transcriptional regulator YP_003020786.1 KEGG: gme:Gmet_2756 hypothetical protein YP_003020787.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: gbm:Gbem_3285 FxsA cytoplasmic membrane protein YP_003020788.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP YP_003020789.1 KEGG: gbm:Gbem_3283 inhibitor of MCP methylation CheC-like protein YP_003020790.1 PFAM: protein of unknown function DUF21; hypothetical protein; transporter-associated region; SMART: hypothetical protein; KEGG: gbm:Gbem_3282 protein of unknown function DUF21 YP_003020791.1 PFAM: integral membrane protein TerC; KEGG: gbm:Gbem_3281 integral membrane protein TerC YP_003020792.1 PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_3280 peptidase M48 Ste24p YP_003020793.1 PFAM: ANTAR domain protein; KEGG: gbm:Gbem_3279 response regulator receiver and ANTAR domain protein YP_003020794.1 PFAM: secretion protein HlyD; KEGG: gbm:Gbem_3278 secretion protein HlyD YP_003020795.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3277 ABC transporter YP_003020796.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3276 ABC transporter YP_003020797.1 KEGG: gbm:Gbem_3275 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003020798.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_3274 response regulator receiver sensor signal transduction histidine kinase YP_003020799.1 PFAM: ABC transporter; KEGG: gbm:Gbem_3273 ABC-2 type transporter YP_003020800.1 PFAM: ABC transporter; KEGG: gbm:Gbem_3272 ABC-2 type transporter YP_003020801.1 KEGG: gbm:Gbem_3271 prevent-host-death family protein YP_003020802.1 PFAM: NUDIX hydrolase; KEGG: gbm:Gbem_3270 NUDIX hydrolase YP_003020803.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent hydrolase HDOD; KEGG: gbm:Gbem_3269 signal transduction protein YP_003020804.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_003020805.1 KEGG: gbm:Gbem_3267 hypothetical protein YP_003020806.1 KEGG: gur:Gura_1628 hypothetical protein YP_003020807.1 KEGG: gur:Gura_1629 hypothetical protein YP_003020808.1 PFAM: protein of unknown function DUF503; KEGG: gbm:Gbem_3266 protein of unknown function DUF503 YP_003020809.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gbm:Gbem_3265 efflux transporter RND family, MFP subunit YP_003020810.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3264 ABC transporter YP_003020811.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_3263 protein of unknown function DUF214 YP_003020812.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_3262 protein of unknown function DUF214 YP_003020813.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; chorismate mutase; KEGG: gbm:Gbem_3260 chorismate mutase YP_003020814.1 PFAM: prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: gbm:Gbem_3259 prephenate dehydrogenase YP_003020815.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_003020816.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: gbm:Gbem_3257 cytidylate kinase YP_003020817.1 KEGG: gbm:Gbem_3256 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_003020818.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_003020819.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: gbm:Gbem_3254 histone family protein DNA-binding protein YP_003020820.1 PFAM: integrase family protein; KEGG: gbm:Gbem_3253 integrase family protein YP_003020821.1 KEGG: sat:SYN_02230 cytoplasmic protein YP_003020822.1 PFAM: prophage CP4-57 regulator; KEGG: xcv:XCV2219 hypothetical protein YP_003020823.1 KEGG: rso:RSc2483 hypothetical protein YP_003020824.1 KEGG: ngo:NGO0494 phage associated protein YP_003020825.1 KEGG: sml:Smlt1954 DNA packaging protein GP17 (terminase) YP_003020827.1 PFAM: Resolvase domain; KEGG: gbm:Gbem_3678 resolvase domain YP_003020828.1 KEGG: bcj:BCAL1301 hypothetical protein YP_003020829.1 KEGG: pna:Pnap_4266 hypothetical protein YP_003020830.1 KEGG: cti:RALTA_A0828 hypothetical protein YP_003020831.1 PFAM: SNF2-related protein; restriction endonuclease; helicase; SMART: DEAD-like helicase ; helicase domain protein; KEGG: bpt:Bpet0222 helicase YP_003020833.1 KEGG: gur:Gura_3357 hypothetical protein YP_003020834.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: xac:XAC1822 hypothetical protein YP_003020835.1 KEGG: abo:ABO_2712 hypothetical protein YP_003020836.1 PFAM: ATPase AAA; KEGG: bid:Bind_2313 transcriptional regulator YP_003020837.1 KEGG: gbm:Gbem_1245 hypothetical protein YP_003020838.1 KEGG: gbm:Gbem_1246 hypothetical protein YP_003020839.1 KEGG: avn:Avin_31940 hypothetical protein YP_003020840.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gme:Gmet_0317 XRE family transcriptional regulator YP_003020841.1 KEGG: gme:Gmet_0316 hypothetical protein YP_003020842.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_3439 hypothetical protein YP_003020843.1 KEGG: gbm:Gbem_3238 bifunctional deaminase-reductase domain protein YP_003020844.1 KEGG: ppd:Ppro_1854 HsdR family type I site-specific deoxyribonuclease YP_003020845.1 PFAM: radical SAM protein; KEGG: pca:Pcar_1369 hypothetical protein YP_003020846.1 KEGG: bba:Bd2288 hypothetical protein YP_003020847.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gbm:Gbem_3237 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003020849.1 PFAM: transport-associated; KEGG: gbm:Gbem_3235 transport-associated YP_003020850.1 KEGG: gbm:Gbem_3234 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_003020851.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003020852.1 KEGG: gbm:Gbem_3231 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003020853.1 PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: gbm:Gbem_3230 protein of unknown function DUF1722 YP_003020854.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_3229 protein of unknown function DUF224 cysteine-rich region domain protein YP_003020856.1 PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_3228 integral membrane sensor signal transduction histidine kinase YP_003020857.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3227 Fis family transcriptional regulator YP_003020858.1 PFAM: sodium:dicarboxylate symporter; KEGG: gbm:Gbem_3225 sodium:dicarboxylate symporter YP_003020859.1 KEGG: gbm:Gbem_3223 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_003020860.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding protein; KEGG: gbm:Gbem_3222 succinyl-CoA synthetase, subunit alpha YP_003020861.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: gbm:Gbem_3221 CopG domain protein DNA-binding domain protein YP_003020862.1 KEGG: gbm:Gbem_3220 hypothetical protein YP_003020863.1 PFAM: peptidase M28; peptidase M20; KEGG: gbm:Gbem_3219 peptidase M28 YP_003020864.1 PFAM: CHAD domain containing protein; KEGG: gbm:Gbem_3218 CHAD domain containing protein YP_003020865.1 KEGG: gbm:Gbem_3217 hypothetical protein YP_003020866.1 KEGG: gbm:Gbem_3216 hypothetical protein YP_003020867.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: gbm:Gbem_3215 UDP-glucose 4-epimerase YP_003020868.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: gbm:Gbem_3214 domain of unknown function DUF1732 YP_003020869.1 Essential for recycling GMP and indirectly, cGMP YP_003020870.1 TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; KEGG: gbm:Gbem_3212 DNA-directed RNA polymerase, omega subunit YP_003020871.1 KEGG: gbm:Gbem_3211 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003020872.1 TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: gbm:Gbem_3210 endoribonuclease L-PSP YP_003020873.1 required for 70S ribosome assembly YP_003020874.1 PFAM: protein of unknown function DUF218; KEGG: gbm:Gbem_3208 protein of unknown function DUF218 YP_003020875.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_003020876.1 PFAM: PSP1 domain protein; KEGG: gbm:Gbem_3206 PSP1 domain protein YP_003020877.1 TIGRFAM: DNA polymerase III delta prime subunit; KEGG: gbm:Gbem_3205 DNA polymerase III delta prime subunit YP_003020878.1 KEGG: gbm:Gbem_3204 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_003020879.1 KEGG: gbm:Gbem_3203 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003020880.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_3202 radical SAM protein YP_003020881.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_003020882.1 KEGG: gbm:Gbem_3199 hypothetical protein YP_003020883.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: gbm:Gbem_3198 PTS IIA-like nitrogen-regulatory protein PtsN YP_003020884.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gbm:Gbem_3197 NADH/ubiquinone/plastoquinone (complex I) YP_003020885.1 PFAM: polysulphide reductase NrfD; KEGG: gbm:Gbem_3196 polysulphide reductase NrfD YP_003020886.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3195 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003020887.1 KEGG: gbm:Gbem_3194 hypothetical protein YP_003020888.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gbm:Gbem_3193 NADH/ubiquinone/plastoquinone (complex I) YP_003020889.1 KEGG: gbm:Gbem_3191 NAD-dependent dehydrogenase subunit YP_003020890.1 KEGG: gbm:Gbem_3190 NAD-dependent dehydrogenase subunit YP_003020891.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gbm:Gbem_3189 NADH/ubiquinone/plastoquinone (complex I) YP_003020892.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: gbm:Gbem_3188 NADH-ubiquinone oxidoreductase chain 49kDa YP_003020893.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3187 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003020894.1 KEGG: gbm:Gbem_1486 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003020895.1 KEGG: gbm:Gbem_3186 hypothetical protein YP_003020896.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_3185 cold-shock DNA-binding domain protein YP_003020897.1 PFAM: protein of unknown function DUF500; KEGG: gbm:Gbem_3182 protein of unknown function DUF500 YP_003020898.1 PFAM: Hpt domain protein; KEGG: gbm:Gbem_3181 multi-sensor hybrid histidine kinase YP_003020899.1 KEGG: gbm:Gbem_3180 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003020900.1 PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_3179 hypothetical protein YP_003020901.1 KEGG: gur:Gura_3997 hypothetical protein YP_003020902.1 KEGG: gur:Gura_3995 hypothetical protein YP_003020903.1 KEGG: gur:Gura_2745 hypothetical protein YP_003020904.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: gbm:Gbem_3178 peptidase M20 YP_003020905.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_3177 GCN5-related N-acetyltransferase YP_003020906.1 PFAM: surface antigen (D15); KEGG: gbm:Gbem_3176 surface antigen (D15) YP_003020907.1 PFAM: protein of unknown function DUF490; KEGG: gbm:Gbem_3175 protein of unknown function DUF490 YP_003020908.1 KEGG: gbm:Gbem_3174 hypothetical protein YP_003020909.1 KEGG: gbm:Gbem_3173 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; histidine kinase HAMP region domain protein YP_003020910.1 KEGG: gbm:Gbem_3172 hypothetical protein YP_003020911.1 KEGG: gbm:Gbem_3171 hypothetical protein YP_003020912.1 PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_3166 major facilitator superfamily MFS_1 YP_003020913.1 KEGG: gbm:Gbem_3165 hypothetical protein YP_003020914.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: gbm:Gbem_3164 nucleoside 2-deoxyribosyltransferase YP_003020915.1 TIGRFAM: cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: gbm:Gbem_3163 cysteine synthase YP_003020916.1 KEGG: gbm:Gbem_3162 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_003020917.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: gbm:Gbem_3161 hypothetical protein YP_003020918.1 KEGG: gbm:Gbem_3160 hypothetical protein YP_003020919.1 KEGG: gbm:Gbem_3159 hypothetical protein YP_003020920.1 KEGG: gbm:Gbem_3158 hypothetical protein YP_003020921.1 KEGG: gsu:GSU1292 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein YP_003020922.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gsu:GSU1293 LuxR family DNA-binding response regulator YP_003020923.1 PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; KEGG: dat:HRM2_24220 TRAP-type C4-dicarboxylate transporter periplasmic solute-binding protein YP_003020924.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gur:Gura_2985 methyl-accepting chemotaxis sensory transducer YP_003020925.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_3155 chemotaxis protein CheW YP_003020926.1 KEGG: gbm:Gbem_3154 nitroimidazole resistance protein YP_003020927.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1482 methyl-accepting chemotaxis sensory transducer YP_003020928.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_003020929.1 PFAM: cupin; phosphate acetyl/butaryl transferase; KEGG: gbm:Gbem_3151 cupin 2 conserved barrel domain protein YP_003020930.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: gbm:Gbem_3150 glycerophosphoryl diester phosphodiesterase YP_003020931.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: gbm:Gbem_3149 phospholipid/glycerol acyltransferase YP_003020932.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gbm:Gbem_3148 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_003020933.1 KEGG: gbm:Gbem_3147 hypothetical protein YP_003020934.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: gbm:Gbem_3146 ribosome small subunit-dependent GTPase A YP_003020935.1 KEGG: gbm:Gbem_3145 spermidine synthase-like protein YP_003020936.1 KEGG: gbm:Gbem_3144 hypothetical protein YP_003020937.1 KEGG: gbm:Gbem_3143 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_003020938.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_3142 Fis family transcriptional regulator YP_003020939.1 KEGG: gur:Gura_2995 sulfate transporter/antisigma-factor antagonist STAS YP_003020940.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_3141 histidine kinase YP_003020941.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: gbm:Gbem_3140 hydrogenase nickel insertion protein HypA YP_003020942.1 KEGG: gbm:Gbem_3139 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003020943.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2 YP_003020944.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits YP_003020945.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: gbm:Gbem_3136 nickel-dependent hydrogenase large subunit YP_003020946.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: gbm:Gbem_3135 hydrogenase maturation protease YP_003020947.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: gbm:Gbem_3134 sec-independent translocation protein MttA/Hcf106 YP_003020948.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: gbm:Gbem_3133 hydrogenase accessory protein HypB YP_003020949.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: gbm:Gbem_3132 (NiFe) hydrogenase maturation protein HypF YP_003020950.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: gbm:Gbem_3131 hydrogenase assembly chaperone HypC/HupF YP_003020951.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: gbm:Gbem_3130 hydrogenase expression/formation protein HypD YP_003020952.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: gbm:Gbem_3129 hydrogenase expression/formation protein HypE YP_003020953.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_3128 type IV pilus assembly PilZ YP_003020954.1 PFAM: response regulator receiver; general secretory system II protein E domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_3127 response regulator receiver protein YP_003020955.1 PFAM: Rh family protein/ammonium transporter; KEGG: gbm:Gbem_3126 Rh family protein/ammonium transporter YP_003020956.1 PFAM: histone deacetylase superfamily; KEGG: gbm:Gbem_3125 histone deacetylase superfamily YP_003020957.1 KEGG: gbm:Gbem_3124 hypothetical protein YP_003020958.1 KEGG: gbm:Gbem_3123 hypothetical protein YP_003020959.1 KEGG: gbm:Gbem_3122 hypothetical protein YP_003020960.1 PFAM: CoA-binding protein; KEGG: gbm:Gbem_3121 CoA-binding protein YP_003020961.1 KEGG: gbm:Gbem_3120 hypothetical protein YP_003020962.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3119 ABC transporter YP_003020963.1 TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_3118 cytochrome C family protein YP_003020964.1 KEGG: gbm:Gbem_3117 hypothetical protein YP_003020965.1 PFAM: protein of unknown function DUF534; KEGG: gbm:Gbem_3116 protein of unknown function DUF534; SNP /replace=C YP_003020966.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_3115 response regulator receiver protein YP_003020967.1 KEGG: gbm:Gbem_3114 hypothetical protein YP_003020968.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: gbm:Gbem_3113 phosphodiesterase, MJ0936 family YP_003020969.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: gbm:Gbem_3112 signal peptide peptidase SppA, 36K type YP_003020970.1 PFAM: protein of unknown function DUF177; KEGG: gbm:Gbem_3111 protein of unknown function DUF177 YP_003020971.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_003020972.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_003020973.1 KEGG: gbm:Gbem_3108 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_003020974.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: gbm:Gbem_3107 malonyl CoA-acyl carrier protein transacylase YP_003020975.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gbm:Gbem_3106 3-oxoacyl-(acyl-carrier-protein) reductase YP_003020976.1 carries the fatty acid chain in fatty acid biosynthesis YP_003020977.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: gbm:Gbem_3104 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_003020978.1 KEGG: gbm:Gbem_3103 sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: ribose/galactose isomerase YP_003020979.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_003020980.1 KEGG: gbm:Gbem_3101 hypothetical protein YP_003020981.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_3100 radical SAM protein YP_003020982.1 KEGG: gbm:Gbem_3099 hypothetical protein YP_003020983.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase; KEGG: gbm:Gbem_3098 DNA internalization-related competence protein ComEC/Rec2 YP_003020984.1 KEGG: gbm:Gbem_3097 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003020985.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_003020986.1 KEGG: gbm:Gbem_3094 hypothetical protein YP_003020987.1 SMART: zinc finger CDGSH-type domain protein; KEGG: gbm:Gbem_3093 zinc finger CDGSH-type domain protein YP_003020988.1 KEGG: gbm:Gbem_3092 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003020989.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_003020990.1 PFAM: protein of unknown function DUF445; KEGG: gbm:Gbem_3090 protein of unknown function DUF445 YP_003020991.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: gbm:Gbem_3089 pseudouridine synthase YP_003020992.1 PFAM: ROSMUCR transcriptional regulator; KEGG: gbm:Gbem_3088 transcriptional regulator, MucR family YP_003020993.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3087 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003020994.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_003020995.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: gbm:Gbem_3085 thiamine pyrophosphate protein domain protein TPP-binding YP_003020996.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: gbm:Gbem_3084 pyruvate/ketoisovalerate oxidoreductase, subunit gamma YP_003020997.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: gbm:Gbem_3083 phosphoesterase PA-phosphatase related YP_003020998.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: gbm:Gbem_3082 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_003020999.1 KEGG: gbm:Gbem_3081 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; helicase; SMART: DEAD-like helicase ; helicase YP_003021000.1 PFAM: peptidase M23; KEGG: gbm:Gbem_3080 peptidase M23B YP_003021001.1 PFAM: glutamine synthetase; KEGG: gbm:Gbem_3079 glutamine synthetase YP_003021002.1 PFAM: nitrogen regulatory protein P-II; KEGG: gbm:Gbem_3078 nitrogen regulatory protein P-II YP_003021003.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: gbm:Gbem_3077 glutamine synthetase YP_003021004.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_3076 hypothetical protein YP_003021005.1 KEGG: gbm:Gbem_3075 hypothetical protein YP_003021006.1 PFAM: protein of unknown function DUF1255; KEGG: gbm:Gbem_3074 protein of unknown function DUF1255 YP_003021007.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: gbm:Gbem_3073 glutamyl-tRNA synthetase class Ic YP_003021008.1 KEGG: gbm:Gbem_3072 hypothetical protein YP_003021009.1 PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_3071 thioesterase superfamily protein YP_003021010.1 KEGG: gbm:Gbem_3070 hypothetical protein YP_003021011.1 PFAM: NHL repeat containing protein; KEGG: gbm:Gbem_3058 NHL repeat protein YP_003021012.1 TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_3057 cytochrome C family protein YP_003021013.1 KEGG: gbm:Gbem_3056 cytochrome C family protein YP_003021014.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: gbm:Gbem_3055 peptidase S8 and S53 subtilisin kexin sedolisin YP_003021015.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gbm:Gbem_3054 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003021016.1 PFAM: PKD domain containing protein; Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: gbm:Gbem_3053 Ig family protein YP_003021017.1 TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_3052 cytochrome C family protein YP_003021018.1 KEGG: gbm:Gbem_3051 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein YP_003021019.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: gbm:Gbem_3050 molybdopterin-guanine dinucleotide biosynthesis protein B YP_003021020.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_003021021.1 TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: gbm:Gbem_3048 hypothetical protein YP_003021022.1 TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: gbm:Gbem_3047 type VI secretion protein, VC_A0114 family YP_003021023.1 TIGRFAM: type IV / VI secretion system protein, DotU family; KEGG: gbm:Gbem_3046 hypothetical protein YP_003021024.1 KEGG: gbm:Gbem_3045 hypothetical protein YP_003021025.1 TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: gbm:Gbem_3044 type VI secretion-associated protein, ImpA family YP_003021026.1 TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_3043 type VI secretion protein, VC_A0107 family YP_003021027.1 TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: gbm:Gbem_3042 type VI secretion protein, EvpB/VC_A0108 family YP_003021028.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: gbm:Gbem_3041 type VI secretion system effector, Hcp1 family YP_003021029.1 TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: gbm:Gbem_3040 type VI secretion system lysozyme-related protein YP_003021030.1 TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: gbm:Gbem_3039 type VI secretion protein, VC_A0110 family YP_003021031.1 TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: gbm:Gbem_3038 type VI secretion protein, VC_A0111 family YP_003021032.1 KEGG: gbm:Gbem_3037 hypothetical protein YP_003021033.1 SMART: ankyrin; KEGG: gbm:Gbem_3036 ankyrin YP_003021034.1 PFAM: ankyrin; KEGG: gbm:Gbem_3036 ankyrin YP_003021035.1 TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: gbm:Gbem_3035 type VI secretion system Vgr family protein YP_003021036.1 KEGG: gbm:Gbem_3034 hypothetical protein YP_003021037.1 KEGG: gbm:Gbem_3033 hypothetical protein YP_003021038.1 KEGG: gbm:Gbem_3032 hypothetical protein YP_003021039.1 KEGG: gbm:Gbem_3031 hypothetical protein YP_003021040.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: gbm:Gbem_3030 phosphoesterase PA-phosphatase related YP_003021041.1 KEGG: gbm:Gbem_3029 hypothetical protein YP_003021042.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Resolvase RNase H domain protein fold; KEGG: gbm:Gbem_3028 RNA binding S1 domain protein YP_003021043.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: gbm:Gbem_3026 CMP/dCMP deaminase zinc-binding YP_003021044.1 PFAM: ATP-cone domain protein; KEGG: gbm:Gbem_3025 ATP-cone domain protein YP_003021045.1 KEGG: gbm:Gbem_3024 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_003021046.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_003021047.1 TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: gbm:Gbem_3022 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003021048.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_003021049.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: gbm:Gbem_3020 NusB antitermination factor YP_003021050.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_003021051.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_3018 hemerythrin HHE cation binding domain protein YP_003021052.1 KEGG: gbm:Gbem_3017 hypothetical protein YP_003021053.1 KEGG: gbm:Gbem_3016 hypothetical protein YP_003021054.1 Contains selenocysteine; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gme:Gmet_3516 AhpC/Tsa family protein, selenocysteine-containing YP_003021055.1 KEGG: gbm:Gbem_3014 phosphofructokinase; TIGRFAM: phosphofructokinase; PFAM: phosphofructokinase YP_003021056.1 PFAM: chemotaxis sensory transducer; GAF domain protein; SMART: chemotaxis sensory transducer; GAF domain protein; KEGG: gbm:Gbem_3013 methyl-accepting chemotaxis sensory transducer with GAF sensor YP_003021057.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_003021058.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_003021059.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_003021060.1 PFAM: amidohydrolase; amidohydrolase; KEGG: gbm:Gbem_3009 amidohydrolase YP_003021061.1 KEGG: gur:Gura_1320 hypothetical protein YP_003021062.1 KEGG: geo:Geob_2862 hypothetical protein YP_003021063.1 KEGG: oca:OCAR_6404 hypothetical protein YP_003021064.1 KEGG: pmy:Pmen_3424 hypothetical protein YP_003021065.1 KEGG: pap:PSPA7_4430 hypothetical protein YP_003021066.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: bxe:Bxe_B0141 DEAD/DEAH box helicase YP_003021067.1 KEGG: sbn:Sbal195_1984 hypothetical protein YP_003021068.1 KEGG: gbm:Gbem_2976 hypothetical protein YP_003021069.1 KEGG: gur:Gura_0948 hypothetical protein YP_003021070.1 PFAM: protein of unknown function DUF86; KEGG: gbm:Gbem_2977 protein of unknown function DUF86 YP_003021071.1 PFAM: DNA polymerase beta domain protein region; KEGG: gbm:Gbem_2978 DNA polymerase beta domain protein region YP_003021072.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_003021073.1 PFAM: integrase family protein; KEGG: gbm:Gbem_3253 integrase family protein YP_003021075.1 PFAM: prophage CP4-57 regulator; KEGG: xcv:XCV2219 hypothetical protein YP_003021076.1 KEGG: gbm:Gbem_3491 hypothetical protein YP_003021079.1 KEGG: gbm:Gbem_2964 hypothetical protein YP_003021080.1 KEGG: gbm:Gbem_2963 rhodanese domain protein YP_003021081.1 KEGG: gbm:Gbem_2962 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; CHASE domain protein; PAS fold-3 domain protein; response regulator receiver; PAS fold domain protein; hypothetical protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; PAS domain containing protein YP_003021082.1 KEGG: gbm:Gbem_2961 hypothetical protein YP_003021083.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gbm:Gbem_2960 glyoxalase/bleomycin resistance protein/dioxygenase YP_003021084.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gbm:Gbem_2959 short-chain dehydrogenase/reductase SDR YP_003021085.1 KEGG: geo:Geob_0313 protein of unknown function DUF1222 YP_003021086.1 KEGG: gbm:Gbem_2958 FAD dependent oxidoreductase YP_003021087.1 Contains selenocysteine; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gur:Gura_1228 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003021088.1 KEGG: gbm:Gbem_2955 hypothetical protein YP_003021089.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_2952 transcriptional regulator YP_003021090.1 KEGG: gbm:Gbem_2951 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_003021091.1 KEGG: gbm:Gbem_2950 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: NMT1/THI5 like domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; response regulator receiver; histidine kinase A domain protein YP_003021092.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_2949 type IV pilus assembly PilZ YP_003021093.1 PFAM: protein of unknown function DUF1294; KEGG: gbm:Gbem_2948 protein of unknown function DUF1294 YP_003021094.1 KEGG: gbm:Gbem_2947 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003021095.1 KEGG: gbm:Gbem_2946 cytochrome C family protein YP_003021096.1 PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; KEGG: gbm:Gbem_2943 chemotaxis protein CheR YP_003021097.1 PFAM: beta-lactamase; KEGG: glo:Glov_1736 beta-lactamase YP_003021098.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2942 methyl-accepting chemotaxis sensory transducer YP_003021099.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: gbm:Gbem_2941 sulfate transporter/antisigma-factor antagonist STAS YP_003021100.1 PFAM: CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_2940 chemotaxis protein CheA YP_003021101.1 KEGG: gbm:Gbem_2939 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; GAF domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; extracellular solute-binding protein family 3; histidine kinase A domain protein; PAS domain containing protein YP_003021102.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: gbm:Gbem_2938 import inner membrane translocase subunit Tim44 YP_003021103.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: gbm:Gbem_2937 CopG domain protein DNA-binding domain protein YP_003021104.1 KEGG: gur:Gura_3576 hypothetical protein YP_003021105.1 KEGG: gur:Gura_2424 hypothetical protein YP_003021106.1 PFAM: methyltransferase type 12; KEGG: gbm:Gbem_2936 methyltransferase type 11 YP_003021107.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2935 response regulator receiver protein YP_003021108.1 PFAM: SEC-C motif domain protein; KEGG: vei:Veis_2451 SecC motif-containing protein YP_003021109.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: geo:Geob_2579 di-heme cytochrome C peroxidase YP_003021110.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gur:Gura_2014 PAS/PAC sensor signal transduction histidine kinase YP_003021111.1 KEGG: gbm:Gbem_2931 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003021112.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: geo:Geob_2268 methyl-accepting chemotaxis sensory transducer YP_003021113.1 KEGG: gbm:Gbem_2930 PAS modulated sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; hypothetical protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAS domain containing protein YP_003021114.1 PFAM: cytochrome C552; KEGG: gbm:Gbem_2929 cytochrome c552 YP_003021115.1 PFAM: HPP family protein; KEGG: gbm:Gbem_2928 HPP family protein? YP_003021116.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_2927 protein of unknown function DUF224 cysteine-rich region domain protein YP_003021117.1 PFAM: protein of unknown function DUF255; KEGG: gbm:Gbem_2926 protein of unknown function DUF255 YP_003021118.1 KEGG: gbm:Gbem_2925 hypothetical protein YP_003021119.1 PFAM: GTP-binding protein HSR1-related; KEGG: gbm:Gbem_2924 HSR1-related GTP-binding protein YP_003021120.1 PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_2923 histidine kinase YP_003021121.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2922 Fis family transcriptional regulator YP_003021122.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters YP_003021123.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: gbm:Gbem_2920 tetrahydrofolate dehydrogenase/cyclohydrolase YP_003021124.1 PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_2919 XRE family transcriptional regulator YP_003021125.1 PFAM: saccharopine dehydrogenase; KEGG: gbm:Gbem_2918 saccharopine dehydrogenase YP_003021126.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gbm:Gbem_2917 carboxynorspermidine decarboxylase YP_003021127.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_003021128.1 KEGG: gbm:Gbem_2915 hypothetical protein YP_003021129.1 PFAM: rubrerythrin; KEGG: gbm:Gbem_2914 rubrerythrin YP_003021130.1 PFAM: YceI family protein; KEGG: gbm:Gbem_2913 YceI family protein YP_003021131.1 KEGG: gbm:Gbem_2912 hypothetical protein YP_003021132.1 PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_2911 protein of unknown function DUF162 YP_003021133.1 PFAM: protein of unknown function DUF162; KEGG: gbm:Gbem_2910 protein of unknown function DUF162 YP_003021134.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: gbm:Gbem_2909 L-lactate transport YP_003021135.1 PFAM: LrgA family protein; KEGG: gbm:Gbem_2908 LrgA family protein YP_003021136.1 PFAM: LrgB family protein; KEGG: gbm:Gbem_2907 LrgB family protein YP_003021137.1 PFAM: FAD linked oxidase; KEGG: gbm:Gbem_2906 FAD linked oxidase YP_003021138.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_2905 protein of unknown function DUF224 cysteine-rich region domain protein YP_003021139.1 PFAM: GntR family transcriptional regulator; GntR domain protein; SMART: GntR family transcriptional regulator; KEGG: gbm:Gbem_2904 GntR domain protein YP_003021140.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_003021141.1 PFAM: peptidoglycan-binding LysM; KEGG: gbm:Gbem_2902 peptidoglycan-binding LysM YP_003021142.1 KEGG: gbm:Gbem_2901 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate dehydrogenase NADP-dependent monomeric type YP_003021143.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_003021144.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2899 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003021145.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: gbm:Gbem_2898 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_003021146.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_003021147.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: gbm:Gbem_2896 pyruvate ferredoxin/flavodoxin oxidoreductase YP_003021148.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gbm:Gbem_2895 metal dependent phosphohydrolase YP_003021149.1 PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: gbm:Gbem_2894 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_003021150.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (uracil-5)-methyltransferase; KEGG: gbm:Gbem_2893 RNA methyltransferase, TrmA family YP_003021151.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_003021152.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003021153.1 KEGG: gbm:Gbem_2890 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003021154.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: gbm:Gbem_2889 RNA methyltransferase, TrmH family, group 3 YP_003021155.1 KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein YP_003021156.1 PFAM: protein of unknown function UPF0066; KEGG: gbm:Gbem_2886 protein of unknown function UPF0066 YP_003021158.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_3909 hypothetical protein YP_003021159.1 PFAM: protein of unknown function DUF6 transmembrane; protein of unknown function DUF250; KEGG: gbm:Gbem_2885 protein of unknown function DUF6 transmembrane YP_003021160.1 KEGG: dvm:DvMF_1418 hypothetical protein YP_003021162.1 KEGG: dvm:DvMF_1416 hypothetical protein YP_003021163.1 TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvl:Dvul_0060 ATPase P YP_003021164.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_2872 hypothetical protein YP_003021165.1 KEGG: gbm:Gbem_2868 hypothetical protein YP_003021166.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbm:Gbem_2867 glutamate synthase, NADH/NADPH, small subunit YP_003021167.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: gbm:Gbem_2866 ferredoxin-dependent glutamate synthase YP_003021168.1 KEGG: gbm:Gbem_2865 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein YP_003021169.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_2864 hypothetical protein YP_003021170.1 PFAM: CsbD family protein; KEGG: gbm:Gbem_2861 CsbD family protein YP_003021171.1 PFAM: sporulation domain protein; KEGG: gbm:Gbem_2860 sporulation domain protein YP_003021172.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gbm:Gbem_2859 Orn/DAP/Arg decarboxylase 2 YP_003021173.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: gbm:Gbem_2858 transcriptional regulator, AsnC family YP_003021174.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2857 methyl-accepting chemotaxis sensory transducer YP_003021175.1 PFAM: protein of unknown function UPF0153; KEGG: gbm:Gbem_2855 protein of unknown function UPF0153 YP_003021176.1 PFAM: chemotaxis sensory transducer; type IV pilus assembly PilZ; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: gbm:Gbem_2854 methyl-accepting chemotaxis sensory transducer YP_003021177.1 KEGG: gbm:Gbem_2853 hypothetical protein YP_003021178.1 PFAM: diacylglycerol kinase; KEGG: gbm:Gbem_2852 diacylglycerol kinase YP_003021179.1 PFAM: metallophosphoesterase; KEGG: gbm:Gbem_2851 metallophosphoesterase YP_003021180.1 PFAM: protein of unknown function DUF454; KEGG: gbm:Gbem_2850 protein of unknown function DUF454 YP_003021181.1 PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: gbm:Gbem_2849 SH3 type 3 domain protein YP_003021182.1 KEGG: gbm:Gbem_2848 hypothetical protein YP_003021183.1 KEGG: gbm:Gbem_2847 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; PAS domain containing protein; histidine kinase HAMP region domain protein YP_003021184.1 PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_2846 thioesterase superfamily protein YP_003021185.1 KEGG: gbm:Gbem_2845 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003021186.1 PFAM: transcription regulator MerR DNA binding; MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: gbm:Gbem_2844 MerR family transcriptional regulator YP_003021187.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: gbm:Gbem_2843 acetyl-CoA hydrolase/transferase YP_003021188.1 PFAM: transcriptional regulator IclR; KEGG: gbm:Gbem_2842 transcriptional regulator, IclR family YP_003021189.1 PFAM: protein of unknown function DUF485; KEGG: gbm:Gbem_2841 protein of unknown function DUF485 YP_003021190.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: gbm:Gbem_2840 SSS sodium solute transporter superfamily YP_003021191.1 KEGG: gbm:Gbem_2839 hypothetical protein YP_003021192.1 KEGG: gbm:Gbem_2838 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; ArgK protein YP_003021193.1 PFAM: nitroreductase; KEGG: gbm:Gbem_2837 nitroreductase YP_003021194.1 PFAM: peptidase M24; creatinase; KEGG: gbm:Gbem_2836 peptidase M24 YP_003021195.1 KEGG: gbm:Gbem_2835 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_003021196.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: gbm:Gbem_2834 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_003021197.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_2833 enoyl-CoA hydratase/isomerase YP_003021198.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: gbm:Gbem_2832 acyl-CoA dehydrogenase domain protein YP_003021199.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2831 protein of unknown function DUF224 cysteine-rich region domain protein YP_003021200.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_2830 electron transfer flavoprotein alpha/beta-subunit YP_003021201.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_2829 electron transfer flavoprotein subunit alpha YP_003021202.1 TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: gbm:Gbem_2828 cob(I)alamin adenosyltransferase YP_003021203.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: gbm:Gbem_2826 acyl-CoA dehydrogenase domain protein YP_003021204.1 PFAM: coenzyme A transferase; KEGG: gbm:Gbem_2825 coenzyme A transferase YP_003021205.1 PFAM: coenzyme A transferase; KEGG: gbm:Gbem_2824 coenzyme A transferase YP_003021206.1 KEGG: gbm:Gbem_2823 hypothetical protein YP_003021207.1 KEGG: gbm:Gbem_2822 hypothetical protein YP_003021208.1 KEGG: gbm:Gbem_2821 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003021209.1 PFAM: phosphofructokinase; KEGG: gbm:Gbem_2820 phosphofructokinase YP_003021210.1 KEGG: gbm:Gbem_2819 RNA 3'-phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region YP_003021211.1 PFAM: protein of unknown function UPF0126; KEGG: gbm:Gbem_2816 protein of unknown function UPF0126 YP_003021212.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: gbm:Gbem_2815 GTP-binding proten HflX YP_003021213.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gbm:Gbem_2814 short-chain dehydrogenase/reductase SDR YP_003021214.1 KEGG: gbm:Gbem_2813 hypothetical protein YP_003021215.1 KEGG: gbm:Gbem_2812 hypothetical protein YP_003021216.1 PFAM: protein of unknown function UPF0153; KEGG: gbm:Gbem_2811 protein of unknown function UPF0153 YP_003021217.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2810 response regulator receiver protein YP_003021218.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gbm:Gbem_2809 YbaK/EbsC protein YP_003021219.1 PFAM: silent information regulator protein Sir2; KEGG: gbm:Gbem_2808 silent information regulator protein Sir2 YP_003021220.1 TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase; KEGG: gbm:Gbem_2807 TIM-barrel protein, nifR3 family YP_003021221.1 KEGG: gbm:Gbem_2806 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003021222.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2805 Fis family transcriptional regulator YP_003021223.1 PFAM: isochorismatase hydrolase; KEGG: gbm:Gbem_2804 isochorismatase hydrolase YP_003021224.1 PFAM: response regulator receiver; type IV pilus assembly PilZ; SMART: response regulator receiver; KEGG: gbm:Gbem_2803 response regulator receiver modulated PilZ sensor protein YP_003021225.1 KEGG: gbm:Gbem_2802 hypothetical protein YP_003021226.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: gbm:Gbem_2801 replicative DNA helicase YP_003021227.1 TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O RecO; KEGG: gbm:Gbem_2800 DNA repair protein RecO YP_003021228.1 PFAM: dihydrofolate reductase region; KEGG: gbm:Gbem_2799 dihydrofolate reductase region YP_003021229.1 KEGG: gbm:Gbem_2798 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS; Smr protein/MutS2; MutS III domain protein YP_003021230.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: gbm:Gbem_2797 phospholipase D/transphosphatidylase YP_003021231.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: gbm:Gbem_2796 nitrogen-fixing NifU domain protein YP_003021232.1 catalyzes the formation of fumarate from aspartate YP_003021233.1 PFAM: rubrerythrin; KEGG: gur:Gura_0941 rubrerythrin YP_003021234.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: gbm:Gbem_2794 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_003021235.1 PFAM: protein of unknown function DUF185; KEGG: gbm:Gbem_2793 protein of unknown function DUF185 YP_003021237.1 PFAM: RelA/SpoT domain protein; KEGG: gsu:GSU2442 RelA/SpoT domain-containing protein YP_003021238.1 PFAM: PemK family protein; KEGG: psp:PSPPH_A0142 hypothetical protein YP_003021239.1 PFAM: protein of unknown function DUF1568; KEGG: pca:Pcar_1084 transposase and inactivated derivatives YP_003021240.1 TIGRFAM: extracellular repeat protein, HAF family; KEGG: geo:Geob_2006 extracellular repeat protein, HAF family YP_003021241.1 PFAM: protein of unknown function UPF0150; HicB family protein; KEGG: gur:Gura_0842 hypothetical protein YP_003021242.1 PFAM: Rh family protein/ammonium transporter; KEGG: nmu:Nmul_A0516 Rh-like protein/ammonium transporter YP_003021244.1 KEGG: pin:Ping_1121 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003021245.1 PFAM: lipocalin; KEGG: gbm:Gbem_2786 lipocalin family protein YP_003021246.1 KEGG: gbm:Gbem_2785 ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; SMART: ATPase AAA YP_003021247.1 KEGG: gsu:GSU2816 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; PAS domain containing protein YP_003021248.1 KEGG: gme:Gmet_1385 hypothetical protein YP_003021249.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: geo:Geob_2730 cytochrome C biogenesis protein transmembrane region YP_003021250.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: geo:Geob_2731 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003021251.1 PFAM: arylsulfotransferase; KEGG: geo:Geob_2732 arylsulfotransferase YP_003021252.1 KEGG: geo:Geob_2733 disulfide oxidoreductase YP_003021253.1 PFAM: DSBA oxidoreductase; KEGG: geo:Geob_2734 DsbA oxidoreductase YP_003021254.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: geo:Geob_2735 histidine kinase YP_003021255.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: geo:Geob_2736 response regulator receiver protein YP_003021256.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_2780 helix-turn-helix type 11 domain protein YP_003021257.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: gbm:Gbem_2779 DEAD/DEAH box helicase YP_003021258.1 KEGG: gbm:Gbem_2778 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_003021259.1 PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: gbm:Gbem_2777 Glu/Leu/Phe/Val dehydrogenase YP_003021260.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: gbm:Gbem_2776 tRNA pseudouridine synthase D TruD YP_003021261.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_003021262.1 PFAM: integrase family protein; KEGG: gbm:Gbem_3007 integrase family protein YP_003021265.1 PFAM: HNH endonuclease; NUMOD4 domain protein; KEGG: NUMOD4 motif family protein YP_003021266.1 KEGG: see:SNSL254_A2912 hypothetical protein YP_003021267.1 KEGG: noc:Noc_A0014 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003021268.1 KEGG: ajs:Ajs_2425 hypothetical protein YP_003021269.1 PFAM: DEAD/DEAH box helicase; SMART: DEAD-like helicase; KEGG: ajs:Ajs_2426 DEAD/DEAH box helicase domain-containing protein YP_003021270.1 KEGG: ajs:Ajs_2426 DEAD/DEAH box helicase domain-containing protein YP_003021271.1 KEGG: ftn:FTN_0587 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003021272.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_0591 XRE family transcriptional regulator YP_003021275.1 PFAM: domain of unknown function DUF1738; KEGG: ppr:PBPRB1631 antirestriction protein YP_003021277.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: ppd:Ppro_2277 DNA repair protein RadC YP_003021279.1 PFAM: integrase family protein; KEGG: sfu:Sfum_2244 phage integrase family protein YP_003021280.1 KEGG: gbm:Gbem_2774 rubrerythrin YP_003021281.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2773 hemerythrin-like metal-binding protein YP_003021282.1 KEGG: gbm:Gbem_2772 hypothetical protein YP_003021283.1 KEGG: gbm:Gbem_2771 hypothetical protein YP_003021284.1 KEGG: gbm:Gbem_2770 hypothetical protein YP_003021285.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_2769 type IV pilus assembly PilZ YP_003021286.1 KEGG: gbm:Gbem_2768 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003021287.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_003021288.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_003021289.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_003021290.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_003021291.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_003021292.1 KEGG: gbm:Gbem_2762 hypothetical protein YP_003021293.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_003021294.1 KEGG: gbm:Gbem_2760 hypothetical protein YP_003021295.1 KEGG: geo:Geob_0026 nucleic acid binding, OB-fold, tRNA/helicase-type YP_003021296.1 KEGG: gbm:Gbem_2759 hypothetical protein YP_003021297.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_003021298.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate YP_003021299.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_003021300.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_003021301.1 Catalyzes the phosphorylation of UMP to UDP YP_003021302.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_003021303.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_003021304.1 PFAM: phosphatidate cytidylyltransferase; KEGG: gbm:Gbem_2751 phosphatidate cytidylyltransferase YP_003021305.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_003021306.1 KEGG: gbm:Gbem_2749 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003021307.1 PFAM: peptidase M22 glycoprotease; KEGG: gbm:Gbem_2748 peptidase M22 glycoprotease YP_003021308.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_003021309.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: gbm:Gbem_2746 acetolactate synthase, large subunit, biosynthetic type YP_003021310.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_003021311.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_003021312.1 KEGG: gbm:Gbem_2743 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003021313.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_003021314.1 KEGG: gbm:Gbem_2741 hypothetical protein YP_003021315.1 KEGG: gbm:Gbem_2740 hypothetical protein YP_003021316.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_2739 cold-shock DNA-binding domain protein YP_003021317.1 PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_2738 hypothetical protein YP_003021318.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_003021319.1 PFAM: aconitate hydratase domain protein; KEGG: gbm:Gbem_2736 aconitate hydratase domain protein YP_003021320.1 KEGG: gbm:Gbem_2735 hypothetical protein YP_003021321.1 PFAM: protein of unknown function DUF140; KEGG: gbm:Gbem_2734 protein of unknown function DUF140 YP_003021322.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_2733 mammalian cell entry related domain protein YP_003021323.1 KEGG: gbm:Gbem_2732 hypothetical protein YP_003021324.1 KEGG: gbm:Gbem_2731 hypothetical protein YP_003021325.1 PFAM: peptidase M16 domain protein; KEGG: gbm:Gbem_2730 peptidase M16 domain protein YP_003021326.1 KEGG: gbm:Gbem_2729 hypothetical protein YP_003021327.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: gbm:Gbem_2728 phospholipase D/transphosphatidylase YP_003021328.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: gbm:Gbem_2727 endonuclease/exonuclease/phosphatase YP_003021329.1 PFAM: SNARE associated Golgi protein; KEGG: gbm:Gbem_2726 SNARE associated Golgi protein YP_003021330.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_003021331.1 KEGG: gbm:Gbem_2723 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_003021332.1 PFAM: peptidase C13, legumain asparaginyl peptidase; KEGG: gbm:Gbem_2722 peptidase C13, legumain asparaginyl peptidase YP_003021333.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: gbm:Gbem_2721 peptidase U62 modulator of DNA gyrase YP_003021334.1 KEGG: gbm:Gbem_2720 hypothetical protein YP_003021335.1 TIGRFAM: hypothetical protein; KEGG: gbm:Gbem_2719 hypothetical protein YP_003021336.1 TIGRFAM: hypothetical protein; PFAM: OmpA/MotB domain protein; protein of unknown function DUF11; KEGG: gbm:Gbem_2718 hypothetical protein YP_003021337.1 KEGG: gbm:Gbem_2717 hypothetical protein YP_003021338.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2716 integral membrane sensor signal transduction histidine kinase YP_003021339.1 KEGG: gbm:Gbem_2715 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003021340.1 PFAM: peptidase U32; KEGG: gbm:Gbem_2714 peptidase U32 YP_003021341.1 PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: gbm:Gbem_2713 peptidoglycan-binding LysM YP_003021342.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gbm:Gbem_2712 DNA protecting protein DprA YP_003021343.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity YP_003021344.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_003021345.1 KEGG: gbm:Gbem_2709 hypothetical protein YP_003021346.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_003021347.1 PFAM: alanine racemase domain protein; KEGG: gbm:Gbem_2707 alanine racemase domain protein YP_003021348.1 KEGG: gbm:Gbem_2706 hypothetical protein YP_003021349.1 KEGG: gbm:Gbem_2705 hypothetical protein YP_003021350.1 PFAM: ABC transporter; SMC domain protein; SMART: ATPase AAA; KEGG: gbm:Gbem_2704 ABC transporter YP_003021351.1 KEGG: gbm:Gbem_2703 hypothetical protein YP_003021352.1 KEGG: gbm:Gbem_2702 SAM-dependent methyltransferase-like protein YP_003021353.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2701 hemerythrin-like metal-binding protein YP_003021354.1 KEGG: gbm:Gbem_2700 hypothetical protein YP_003021355.1 KEGG: gbm:Gbem_2699 hypothetical protein YP_003021356.1 PFAM: polysaccharide deacetylase; KEGG: gbm:Gbem_2698 polysaccharide deacetylase YP_003021357.1 Contains selenocysteine; PFAM: thioredoxin domain; KEGG: glo:Glov_0189 thioredoxin domain YP_003021358.1 KEGG: gbm:Gbem_2695 hypothetical protein YP_003021359.1 KEGG: gbm:Gbem_2694 surface antigen msp4 family protein YP_003021360.1 KEGG: gbm:Gbem_2693 hypothetical protein YP_003021361.1 KEGG: gbm:Gbem_2692 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_003021362.1 PFAM: cobalamin B12-binding domain protein; KEGG: gbm:Gbem_2691 cobalamin B12-binding domain protein YP_003021363.1 KEGG: gbm:Gbem_2690 LAO/AO transporter ATPase; TIGRFAM: LAO/AO transporter ATPase; PFAM: ArgK protein; SMART: AAA ATPase YP_003021364.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: gbm:Gbem_2689 ErfK/YbiS/YcfS/YnhG family protein YP_003021365.1 KEGG: gbm:Gbem_2688 uncharacterized membrane-associated protein-like protein YP_003021366.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: gbm:Gbem_2687 RNA methyltransferase, TrmH family, group 1 YP_003021367.1 KEGG: gbm:Gbem_2686 hypothetical protein YP_003021368.1 PFAM: transposase IS4 family protein; KEGG: ppd:Ppro_1770 transposase, IS4 family protein YP_003021369.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_003021370.1 KEGG: gbm:Gbem_2684 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003021371.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; KEGG: gbm:Gbem_2683 RNA polymerase, sigma 70 subunit, RpoD family YP_003021372.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_003021373.1 KEGG: gbm:Gbem_2681 nucleotidyltransferase substrate binding protein, HI0074 family YP_003021374.1 PFAM: DNA polymerase beta domain protein region; KEGG: geo:Geob_3290 DNA polymerase beta domain protein region YP_003021377.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_2671 protein of unknown function DUF1555 YP_003021378.1 KEGG: gbm:Gbem_2670 hypothetical protein YP_003021379.1 KEGG: gbm:Gbem_2669 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003021380.1 KEGG: gbm:Gbem_2668 superfamily I DNA and RNA helicase-like protein YP_003021381.1 KEGG: gbm:Gbem_2667 hypothetical protein YP_003021382.1 KEGG: gbm:Gbem_2666 glucose/sorbosone dehydrogenase-like protein YP_003021383.1 PFAM: response regulator receiver; helix-turn-helix domain protein; SMART: response regulator receiver; helix-turn-helix domain protein; KEGG: gbm:Gbem_2665 XRE family transcriptional regulator YP_003021384.1 KEGG: gbm:Gbem_2664 hypothetical protein YP_003021385.1 PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: gbm:Gbem_2663 protein of unknown function DUF882 YP_003021386.1 PFAM: Na+/H+ antiporter NhaA; KEGG: ppd:Ppro_0071 Na+/H+ antiporter NhaA YP_003021387.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; citrate transporter; KEGG: gur:Gura_2787 TRAP dicarboxylate transporter DctM subunit YP_003021388.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: gur:Gura_2786 tripartite ATP-independent periplasmic transporter DctQ YP_003021389.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: gbm:Gbem_2659 TRAP dicarboxylate transporter DctP subunit YP_003021390.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2658 Fis family transcriptional regulator YP_003021391.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2657 integral membrane sensor signal transduction histidine kinase YP_003021392.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: gbm:Gbem_2656 carboxylyase-related protein YP_003021393.1 KEGG: gbm:Gbem_2654 hemolysin A; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein YP_003021394.1 PFAM: histidine triad (HIT) protein; KEGG: gbm:Gbem_2653 histidine triad (HIT) protein YP_003021395.1 KEGG: gbm:Gbem_2652 hypothetical protein YP_003021396.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_003021397.1 KEGG: gbm:Gbem_2650 anti-sigma regulatory factor, serine/threonine protein kinase YP_003021398.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: gbm:Gbem_2649 anti-sigma-factor antagonist YP_003021399.1 PFAM: stage II sporulation E family protein; GAF domain protein; Na+/solute symporter; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: gbm:Gbem_2648 phytochrome sensor protein YP_003021400.1 KEGG: gbm:Gbem_2647 hypothetical protein YP_003021401.1 PFAM: aminoglycoside phosphotransferase; KEGG: gbm:Gbem_2646 hypothetical protein YP_003021402.1 PFAM: hypothetical protein; TPR repeat-containing protein; hypothetical protein; Sel1 domain protein repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_2645 tetratricopeptide TPR_2 repeat protein YP_003021403.1 PFAM: extracellular solute-binding protein family 5; KEGG: gbm:Gbem_2644 extracellular solute-binding protein family 5 YP_003021404.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gbm:Gbem_2643 binding-protein-dependent transport systems inner membrane component YP_003021405.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gbm:Gbem_2642 binding-protein-dependent transport systems inner membrane component YP_003021406.1 KEGG: gbm:Gbem_2641 hypothetical protein YP_003021407.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: gbm:Gbem_2640 tRNA(Ile)-lysidine synthetase YP_003021408.1 KEGG: gbm:Gbem_2639 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003021409.1 KEGG: gbm:Gbem_2638 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003021410.1 PFAM: protein of unknown function DUF147; KEGG: gbm:Gbem_2637 protein of unknown function DUF147 YP_003021411.1 PFAM: YbbR family protein; KEGG: gbm:Gbem_2636 hypothetical protein YP_003021412.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_003021413.1 involved in the de novo synthesis of pyridoxine (vitamin B6) YP_003021414.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gbm:Gbem_2633 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003021415.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: gme:Gmet_3429 IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase YP_003021416.1 KEGG: gbm:Gbem_2632 hypothetical protein YP_003021417.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_2631 drug resistance transporter EmrB/QacA subfamily YP_003021418.1 PFAM: secretion protein HlyD; KEGG: gbm:Gbem_2630 secretion protein HlyD YP_003021419.1 PFAM: outer membrane efflux protein; KEGG: gbm:Gbem_2629 outer membrane efflux protein YP_003021420.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_2628 MarR family transcriptional regulator YP_003021421.1 KEGG: gbm:Gbem_2621 hypothetical protein YP_003021422.1 KEGG: gbm:Gbem_2620 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_003021423.1 KEGG: gbm:Gbem_2619 4Fe-4S ferredoxin iron-sulfur binding protein YP_003021424.1 KEGG: gbm:Gbem_2618 hypothetical protein YP_003021425.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gbm:Gbem_2617 methyltransferase type 11 YP_003021426.1 KEGG: gbm:Gbem_2616 hypothetical protein YP_003021427.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_2615 radical SAM protein YP_003021428.1 KEGG: gbm:Gbem_2614 coenzyme F390 synthetase-like protein YP_003021429.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gbm:Gbem_2613 molybdenum ABC transporter periplasmic molybdate-binding protein YP_003021430.1 TIGRFAM: molybdate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gbm:Gbem_2612 molybdate ABC transporter inner membrane protein YP_003021431.1 KEGG: gbm:Gbem_2611 molybdate ABC transporter ATPase subunit; TIGRFAM: molybdate ABC transporter ATPase; PFAM: ABC transporter related; TOBE domain protein; SMART: ATPase AAA YP_003021432.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_2610 GCN5-related N-acetyltransferase YP_003021433.1 KEGG: gbm:Gbem_2609 hypothetical protein YP_003021434.1 KEGG: geo:Geob_0327 hypothetical protein YP_003021435.1 KEGG: gbm:Gbem_2603 molecular chaperone-like protein YP_003021437.1 PFAM: lytic transglycosylase catalytic; KEGG: gbm:Gbem_2602 lytic transglycosylase catalytic protein YP_003021438.1 KEGG: gbm:Gbem_2601 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: Cold shock protein; RNA binding S1 domain protein YP_003021439.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: gbm:Gbem_2600 sec-independent protein translocase, TatC subunit YP_003021440.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase; FAD synthetase; KEGG: gbm:Gbem_2599 riboflavin biosynthesis protein RibF YP_003021441.1 PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_2598 hypothetical protein YP_003021442.1 KEGG: gbm:Gbem_2597 hypothetical protein YP_003021443.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; KEGG: gbm:Gbem_2596 shikimate 5-dehydrogenase YP_003021444.1 KEGG: gbm:Gbem_2595 type IV-A pilus assembly ATPase PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system protein E; SMART: ATPase AAA YP_003021445.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: gbm:Gbem_2594 twitching motility protein YP_003021446.1 PFAM: type II secretion system protein; KEGG: gbm:Gbem_2593 type II secretion system protein YP_003021447.1 KEGG: gbm:Gbem_2592 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003021448.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2591 Fis family transcriptional regulator YP_003021449.1 KEGG: ppd:Ppro_1656 pilin domain-containing protein YP_003021450.1 KEGG: ppd:Ppro_1657 hypothetical protein YP_003021451.1 KEGG: glo:Glov_2091 hypothetical protein YP_003021452.1 KEGG: glo:Glov_2090 hypothetical protein YP_003021453.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2586 ABC transporter YP_003021454.1 KEGG: gbm:Gbem_2585 hypothetical protein YP_003021455.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_003021456.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2583 glycosyl transferase family 2 YP_003021457.1 PFAM: glycosyl transferase family 2; KEGG: ade:Adeh_3050 glycosyl transferase YP_003021458.1 PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_1420 glycosyl transferase YP_003021459.1 PFAM: ABC transporter; KEGG: ppd:Ppro_2109 ABC-2 type transporter YP_003021460.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU1505 ABC transporter ATP-binding protein YP_003021461.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_3338 glycosyl transferase YP_003021462.1 PFAM: glycosyl transferase family 2; KEGG: mca:MCA0621 glycosyl transferase, group 2 family protein YP_003021463.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: mlo:mll7087 lipopolysaccharide core biosynthesis glycosyl transferase LpsE YP_003021464.1 PFAM: glycosyl transferase family 2; KEGG: dal:Dalk_1973 glycosyl transferase family 2 YP_003021465.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: methylase YP_003021466.1 KEGG: pnu:Pnuc_0307 hemolytic protein HlpA-like protein YP_003021467.1 PFAM: glycosyl transferase family 9; KEGG: oca:OCAR_5523 glycosyl transferase, family 9 YP_003021468.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1110 glycosyl transferase family 2 YP_003021470.1 KEGG: smt:Smal_0515 hypothetical protein YP_003021471.1 KEGG: xfa:XF0614 hypothetical protein YP_003021472.1 PFAM: glycosyl transferase family 2; KEGG: sde:Sde_0419 dolichyl-phosphate mannose synthase YP_003021473.1 KEGG: sde:Sde_0420 hypothetical protein YP_003021474.1 KEGG: sde:Sde_0421 hypothetical protein YP_003021475.1 KEGG: reu:Reut_A0731 hypothetical protein YP_003021476.1 KEGG: sde:Sde_0423 hypothetical protein YP_003021478.1 PFAM: glycosyl transferase family 2; KEGG: ank:AnaeK_0796 glycosyl transferase family 2 YP_003021479.1 KEGG: gbm:Gbem_2562 hemerythrin HHE cation binding domain protein YP_003021480.1 KEGG: gbm:Gbem_2561 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA YP_003021481.1 KEGG: gbm:Gbem_2560 hypothetical protein YP_003021482.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: gbm:Gbem_2559 ATPase AAA YP_003021483.1 KEGG: gbm:Gbem_2558 hypothetical protein YP_003021484.1 KEGG: gbm:Gbem_2557 hypothetical protein YP_003021485.1 KEGG: gbm:Gbem_2556 hypothetical protein YP_003021486.1 PFAM: transposase IS4 family protein; KEGG: ppd:Ppro_1770 transposase, IS4 family protein YP_003021487.1 PFAM: protein of unknown function DUF559; KEGG: gbm:Gbem_3620 protein of unknown function DUF559 YP_003021488.1 KEGG: gbm:Gbem_2555 hypothetical protein YP_003021489.1 KEGG: gbm:Gbem_2554 hypothetical protein YP_003021490.1 KEGG: gbm:Gbem_2553 hypothetical protein YP_003021491.1 PFAM: GPW/gp25 family protein; KEGG: gbm:Gbem_2552 gpW/GP25 family protein YP_003021492.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_2551 PaaR repeat-containing protein YP_003021493.1 PFAM: protein of unknown function DUF559; KEGG: gur:Gura_1188 hypothetical protein YP_003021494.1 TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: gbm:Gbem_2550 rhs element Vgr protein YP_003021495.1 KEGG: gbm:Gbem_2549 hypothetical protein YP_003021496.1 KEGG: gbm:Gbem_2548 hypothetical protein YP_003021497.1 TIGRFAM: conserved hypothetical protein; KEGG: gbm:Gbem_2547 conserved hypothetical phage tail protein YP_003021498.1 TIGRFAM: conserved hypothetical protein; KEGG: gbm:Gbem_2546 conserved hypothetical phage tail protein YP_003021499.1 KEGG: gbm:Gbem_2545 hypothetical protein YP_003021500.1 KEGG: gbm:Gbem_2544 hypothetical protein YP_003021501.1 PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_2542 thioesterase superfamily protein YP_003021502.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: gbm:Gbem_2541 transcriptional regulator, TraR/DksA family YP_003021503.1 KEGG: gbm:Gbem_3909 hypothetical protein YP_003021504.1 PFAM: histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2540 methyl-accepting chemotaxis sensory transducer YP_003021505.1 KEGG: gbm:Gbem_2539 hypothetical protein YP_003021506.1 KEGG: hypothetical protein YP_003021507.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: gsu:GSU2310 YeeE/YedE family protein YP_003021508.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: gsu:GSU2311 YeeE/YedE family protein YP_003021509.1 KEGG: gbm:Gbem_2538 protein of unknown function DUF1555 YP_003021510.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2521 Fis family transcriptional regulator YP_003021511.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: gbm:Gbem_2520 band 7 protein YP_003021512.1 PFAM: ferritin; KEGG: gbm:Gbem_2519 ferritin Dps family protein YP_003021513.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: gbm:Gbem_2518 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003021514.1 KEGG: gbm:Gbem_2517 hypothetical protein YP_003021515.1 KEGG: gbm:Gbem_2516 PTSINtr with GAF domain, PtsP; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; GAF domain protein; SMART: GAF domain protein YP_003021516.1 PFAM: hypothetical protein; Tetratricopeptide TPR_3; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_2515 tetratricopeptide TPR_2 repeat protein YP_003021517.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbm:Gbem_2514 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003021518.1 KEGG: gbm:Gbem_2513 hypothetical protein YP_003021519.1 KEGG: gbm:Gbem_2512 hypothetical protein YP_003021520.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_003021521.1 KEGG: gbm:Gbem_2510 hypothetical protein YP_003021522.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: gbm:Gbem_2509 cell shape determining protein, MreB/Mrl family YP_003021523.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2508 glycosyl transferase family 2 YP_003021524.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_003021525.1 TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: gbm:Gbem_2506 D,D-heptose 1,7-bisphosphate phosphatase YP_003021526.1 KEGG: gbm:Gbem_2505 hypothetical protein YP_003021527.1 PFAM: protein of unknown function DUF81; KEGG: gbm:Gbem_2504 protein of unknown function DUF81 YP_003021528.1 KEGG: gbm:Gbem_2503 hypothetical protein YP_003021529.1 PFAM: SlyX family protein; KEGG: gbm:Gbem_2502 SlyX family protein YP_003021530.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2501 aldo/keto reductase YP_003021531.1 PFAM: protein of unknown function DUF1653; KEGG: gbm:Gbem_2498 protein of unknown function DUF1653 YP_003021532.1 KEGG: gbm:Gbem_2497 chemotaxis protein CheR; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003021533.1 KEGG: gbm:Gbem_2496 hypothetical protein YP_003021534.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2495 integral membrane sensor hybrid histidine kinase YP_003021535.1 KEGG: gbm:Gbem_2494 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003021536.1 KEGG: glo:Glov_1468 hypothetical protein YP_003021538.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gbm:Gbem_2493 short-chain dehydrogenase/reductase SDR YP_003021539.1 KEGG: gbm:Gbem_2491 hypothetical protein YP_003021540.1 KEGG: gbm:Gbem_2490 hypothetical protein YP_003021541.1 PFAM: protein of unknown function UPF0153; KEGG: gbm:Gbem_2489 protein of unknown function UPF0153 YP_003021542.1 KEGG: gbm:Gbem_2488 hypothetical protein YP_003021543.1 PFAM: Post-segregation antitoxin CcdA; KEGG: gbm:Gbem_2487 post-segregation antitoxin CcdA YP_003021544.1 KEGG: geo:Geob_2244 aspartyl protease-like protein YP_003021545.1 KEGG: gbm:Gbem_2486 hypothetical protein YP_003021546.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; citrate transporter; KEGG: gbm:Gbem_2485 anion transporter YP_003021547.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_2484 transcriptional regulator, BadM/Rrf2 family YP_003021548.1 PFAM: PfkB domain protein; KEGG: gbm:Gbem_2483 PfkB domain protein YP_003021549.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF1228; KEGG: gbm:Gbem_2482 major facilitator superfamily MFS_1 YP_003021550.1 KEGG: gbm:Gbem_2481 hypothetical protein YP_003021551.1 PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_2480 peptidase M48 Ste24p YP_003021552.1 PFAM: LemA family protein; KEGG: gbm:Gbem_2479 LemA family protein YP_003021553.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: gbm:Gbem_2478 major facilitator superfamily MFS_1 YP_003021554.1 PFAM: isochorismatase hydrolase; KEGG: gbm:Gbem_2477 isochorismatase hydrolase YP_003021555.1 PFAM: NADPH-dependent FMN reductase; KEGG: gbm:Gbem_2476 NADPH-dependent FMN reductase YP_003021556.1 PFAM: SNF2-related protein; helicase domain protein; SMART: helicase; DEAD-like helicase; KEGG: gbm:Gbem_2473 SNF2-related protein YP_003021557.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gbm:Gbem_2472 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003021558.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: gbm:Gbem_2471 porphyromonas-type peptidyl-arginine deiminase YP_003021559.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: gbm:Gbem_2470 NUDIX hydrolase YP_003021560.1 PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase; SMART: DEAD-like helicase ; helicase domain protein; KEGG: gbm:Gbem_2469 SNF2-related protein YP_003021561.1 KEGG: gbm:Gbem_2468 anti-sigma regulatory factor, serine/threonine protein kinase YP_003021562.1 KEGG: gbm:Gbem_2467 hypothetical protein YP_003021563.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: gbm:Gbem_2466 sugar fermentation stimulation protein YP_003021564.1 KEGG: gbm:Gbem_2465 hypothetical protein YP_003021565.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: gbm:Gbem_2464 glucose-1-phosphate thymidylyltransferase YP_003021566.1 KEGG: gbm:Gbem_2463 dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like protein YP_003021567.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_003021568.1 TIGRFAM: rod shape-determining protein MreD; KEGG: gbm:Gbem_2461 hypothetical protein YP_003021569.1 KEGG: gbm:Gbem_2460 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003021570.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: gbm:Gbem_2459 rod shape-determining protein RodA YP_003021571.1 KEGG: gbm:Gbem_2458 glycosyltransferase-like protein YP_003021572.1 KEGG: gbm:Gbem_2457 hypothetical protein YP_003021573.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_2456 radical SAM protein YP_003021574.1 KEGG: gbm:Gbem_2455 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; SMART: ATP-binding region ATPase domain protein YP_003021575.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gbm:Gbem_2454 phospholipid/glycerol acyltransferase YP_003021576.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_003021577.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: gbm:Gbem_2452 HNH endonuclease YP_003021578.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: gbm:Gbem_2451 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_003021579.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_2450 tetratricopeptide TPR_2 repeat protein YP_003021580.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gbm:Gbem_2449 glyoxalase/bleomycin resistance protein/dioxygenase YP_003021581.1 KEGG: gbm:Gbem_2448 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_003021582.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gbm:Gbem_2447 ATPase AAA YP_003021583.1 KEGG: gbm:Gbem_2446 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003021584.1 PFAM: ATP-NAD/AcoX kinase; KEGG: gbm:Gbem_2445 ATP-NAD/AcoX kinase YP_003021585.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: gbm:Gbem_2444 DNA repair protein RecN YP_003021586.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_003021587.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: gbm:Gbem_2442 peptidase U62 modulator of DNA gyrase YP_003021588.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gbm:Gbem_2441 ArsR family transcriptional regulator YP_003021589.1 KEGG: gbm:Gbem_2440 peptide ABC transporter ATPase; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003021590.1 KEGG: gbm:Gbem_2439 peptide ABC transporter ATPase; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003021591.1 KEGG: gbm:Gbem_2438 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; metal-dependent hydrolase HDOD; histidine kinase HAMP region domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; histidine kinase HAMP region domain protein YP_003021592.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: stage II sporulation D domain protein; KEGG: gbm:Gbem_2437 SpoIID/LytB domain protein YP_003021593.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_003021594.1 KEGG: gbm:Gbem_2435 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: queuine/other tRNA-ribosyltransferase YP_003021595.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: gbm:Gbem_2434 preprotein translocase, YajC subunit YP_003021596.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_003021597.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_003021598.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: gbm:Gbem_2431 tetratricopeptide TPR_2 repeat protein YP_003021599.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: gur:Gura_1721 single-stranded-DNA-specific exonuclease RecJ YP_003021600.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gbm:Gbem_2428 cation diffusion facilitator family transporter YP_003021601.1 KEGG: gbm:Gbem_2427 multihaem cytochrome YP_003021602.1 PFAM: beta-lactamase; KEGG: gbm:Gbem_2426 beta-lactamase YP_003021604.1 PFAM: metallophosphoesterase; KEGG: gbm:Gbem_2425 metallophosphoesterase YP_003021605.1 KEGG: gbm:Gbem_2424 hypothetical protein YP_003021606.1 PFAM: LemA family protein; KEGG: gbm:Gbem_2423 LemA family protein YP_003021607.1 PFAM: protein of unknown function DUF477; KEGG: gbm:Gbem_2422 protein of unknown function DUF477 YP_003021608.1 PFAM: protein of unknown function DUF477; KEGG: gbm:Gbem_2421 protein of unknown function DUF477 YP_003021609.1 PFAM: response regulator receiver; general secretory system II protein E domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_2420 response regulator receiver protein YP_003021610.1 KEGG: gbm:Gbem_2419 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003021611.1 PFAM: protein of unknown function DUF819; KEGG: gbm:Gbem_2418 protein of unknown function DUF819 YP_003021612.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: gbm:Gbem_2417 mandelate racemase/muconate lactonizing protein YP_003021613.1 KEGG: gbm:Gbem_2416 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_003021614.1 KEGG: gbm:Gbem_2415 hypothetical protein YP_003021615.1 molecular chaperone YP_003021616.1 KEGG: gbm:Gbem_2413 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein YP_003021617.1 KEGG: gbm:Gbem_2412 PAS modulated sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; hypothetical protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAS domain containing protein YP_003021618.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: gbm:Gbem_2411 delta-1-pyrroline-5-carboxylate dehydrogenase YP_003021619.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_003021620.1 KEGG: gbm:Gbem_2409 hypothetical protein YP_003021621.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2408 Fis family transcriptional regulator YP_003021622.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: gbm:Gbem_2407 response regulator receiver modulated metal dependent phosphohydrolase YP_003021623.1 KEGG: gbm:Gbem_2406 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003021624.1 KEGG: gbm:Gbem_2405 hypothetical protein YP_003021625.1 KEGG: gbm:Gbem_2404 cytoplasmic domain of flagellar protein FhlB-like protein YP_003021626.1 PFAM: protein of unknown function DUF399; KEGG: gme:Gmet_0349 hypothetical protein YP_003021627.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: gbm:Gbem_2403 phosphoribosylglycinamide formyltransferase YP_003021628.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_003021629.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_2401 ribosomal-protein-alanine acetyltransferase YP_003021630.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: gbm:Gbem_2400 oxidoreductase FAD/NAD(P)-binding domain protein YP_003021631.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDsubunit alphas and two PyrK subunits YP_003021632.1 KEGG: gbm:Gbem_2398 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein YP_003021633.1 KEGG: gbm:Gbem_2397 hypothetical protein YP_003021634.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: gbm:Gbem_2396 transcriptional regulator, TraR/DksA family YP_003021635.1 KEGG: gbm:Gbem_2395 BioD-like protein N-terminal domain of phosphotransacetylase-like protein YP_003021636.1 KEGG: gbm:Gbem_2394 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein YP_003021637.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: gbm:Gbem_2393 metal dependent phosphohydrolase YP_003021638.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2392 Fis family transcriptional regulator YP_003021639.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_2391 radical SAM protein YP_003021640.1 KEGG: gbm:Gbem_2390 hypothetical protein YP_003021641.1 PFAM: TonB-dependent receptor plug; KEGG: gbm:Gbem_2389 TonB-dependent receptor plug YP_003021642.1 KEGG: gbm:Gbem_2388 ABC-type uncharacterized transport system periplasmic component-like protein YP_003021643.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: gur:Gura_1960 integral membrane sensor signal transduction histidine kinase YP_003021644.1 KEGG: gbm:Gbem_2385 hypothetical protein YP_003021645.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2384 response regulator receiver protein YP_003021646.1 PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2383 response regulator receiver modulated CheB methylesterase YP_003021647.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein; KEGG: gbm:Gbem_2382 chemotaxis protein CheA YP_003021648.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2381 methyl-accepting chemotaxis sensory transducer YP_003021649.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_2380 chemotaxis protein CheW YP_003021650.1 KEGG: gbm:Gbem_2379 chemotaxis protein CheR with Tpr repeats; PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; hypothetical protein; response regulator receiver; hypothetical protein; SMART: MCP methyltransferase CheR-type; response regulator receiver; hypothetical protein YP_003021652.1 KEGG: gbm:Gbem_2378 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003021653.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gbm:Gbem_2377 methyltransferase type 11 YP_003021654.1 PFAM: peptidase M23; KEGG: gbm:Gbem_2376 peptidase M23B YP_003021655.1 KEGG: gbm:Gbem_2375 hypothetical protein YP_003021656.1 KEGG: gbm:Gbem_2374 hypothetical protein YP_003021657.1 PFAM: nitroreductase; KEGG: gbm:Gbem_2373 nitroreductase YP_003021658.1 PFAM: UspA domain protein; KEGG: gbm:Gbem_2372 UspA domain protein YP_003021659.1 PFAM: regulatory protein TetR; KEGG: gbm:Gbem_2371 TetR family transcriptional regulator YP_003021660.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gbm:Gbem_2369 efflux transporter RND family, MFP subunit YP_003021661.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: gbm:Gbem_2368 transporter hydrophobe/amphiphile efflux-1 (HAE1) family YP_003021662.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gbm:Gbem_2367 RND efflux system, outer membrane lipoprotein, NodT family YP_003021663.1 KEGG: gbm:Gbem_2366 hypothetical protein YP_003021664.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: gbm:Gbem_2365 TRAP transporter solute receptor, TAXI family YP_003021665.1 KEGG: gbm:Gbem_2364 hypothetical protein YP_003021666.1 PFAM: VacJ family lipoprotein; KEGG: gbm:Gbem_2363 VacJ family lipoprotein YP_003021667.1 KEGG: gbm:Gbem_2362 hypothetical protein YP_003021668.1 PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_2361 short-chain dehydrogenase/reductase SDR YP_003021669.1 PFAM: fusaric acid resistance protein conserved region; KEGG: gbm:Gbem_2360 fusaric acid resistance protein conserved region YP_003021670.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_2359 MarR family transcriptional regulator YP_003021671.1 KEGG: gbm:Gbem_2358 hypothetical protein YP_003021672.1 Contains selenocysteine; PFAM: Rhodanese domain protein; SMART: rhodanese; KEGG: gbm:Gbem_2357 rhodanese domain protein YP_003021673.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: gbm:Gbem_2355 MATE efflux family protein YP_003021674.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: gbm:Gbem_2354 phosphoadenosine phosphosulfate reductase YP_003021675.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_003021676.1 KEGG: gbm:Gbem_2352 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003021677.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: geo:Geob_1071 cyclic nucleotide-binding protein YP_003021678.1 KEGG: tcx:Tcr_1148 hypothetical protein YP_003021679.1 KEGG: gsu:GSU3414 hypothetical protein YP_003021680.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gsu:GSU3418 sigma-54 dependent DNA-binding response regulator YP_003021681.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU3419 sensor histidine kinase YP_003021682.1 PFAM: ferritin; KEGG: gbm:Gbem_0131 hypothetical protein YP_003021683.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gbm:Gbem_2350 ArsR family transcriptional regulator YP_003021684.1 TIGRFAM: arsenic resistance protein; PFAM: Bile acid:sodium symporter; KEGG: gbm:Gbem_2349 arsenic resistance protein YP_003021685.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: gbm:Gbem_2348 protein tyrosine phosphatase YP_003021686.1 PFAM: permease; KEGG: glo:Glov_1178 permease YP_003021687.1 KEGG: gbm:Gbem_2347 Co/Zn/Cd cation transporter-like protein YP_003021688.1 TIGRFAM: redox-active disulfide protein 2; KEGG: geo:Geob_3502 redox-active disulfide protein 2 YP_003021689.1 PFAM: thioredoxin domain; KEGG: geo:Geob_3503 thioredoxin domain protein YP_003021690.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: glo:Glov_1186 cytochrome C biogenesis protein transmembrane region YP_003021691.1 PFAM: rubrerythrin; KEGG: gbm:Gbem_2340 rubrerythrin YP_003021692.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: gbm:Gbem_2339 preprotein translocase, SecG subunit YP_003021693.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_003021694.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_003021695.1 KEGG: gbm:Gbem_2336 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003021696.1 KEGG: gbm:Gbem_2335 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003021697.1 PFAM: beta-lactamase; KEGG: gbm:Gbem_2334 beta-lactamase YP_003021698.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003021699.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gbm:Gbem_2332 MscS mechanosensitive ion channel YP_003021700.1 PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: gbm:Gbem_2331 AIR synthase related protein YP_003021701.1 KEGG: gbm:Gbem_2330 phosphoribosylformylglycinamidine synthase I YP_003021702.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: gbm:Gbem_2329 amidophosphoribosyltransferase YP_003021703.1 KEGG: gbm:Gbem_2328 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003021704.1 PFAM: protein of unknown function UPF0153; KEGG: gbm:Gbem_2327 hypothetical protein YP_003021705.1 PFAM: YaeQ family protein; KEGG: gbm:Gbem_2326 YaeQ family protein YP_003021706.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: sme:SM_b21380 catechol 1,2-dioxygenase YP_003021707.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: sfu:Sfum_0781 membrane bound O-acyl transferase, MBOAT family protein YP_003021709.1 PFAM: protein of unknown function DUF72; KEGG: gbm:Gbem_2325 protein of unknown function DUF72 YP_003021710.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: gbm:Gbem_2324 phosphoesterase PA-phosphatase related YP_003021711.1 KEGG: gbm:Gbem_2323 hypothetical protein YP_003021712.1 KEGG: gbm:Gbem_2322 hypothetical protein YP_003021713.1 KEGG: gbm:Gbem_2321 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003021714.1 KEGG: gbm:Gbem_2320 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; hypothetical protein; biotin protein ligase domain protein YP_003021715.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_003021716.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003021717.1 PFAM: sporulation domain protein; KEGG: gbm:Gbem_2317 sporulation domain protein YP_003021718.1 KEGG: gbm:Gbem_2316 hypothetical protein YP_003021719.1 KEGG: gbm:Gbem_2315 hypothetical protein YP_003021720.1 PFAM: MgtC/SapB transporter; KEGG: gbm:Gbem_2314 MgtC/SapB transporter YP_003021721.1 PFAM: rubrerythrin; KEGG: gbm:Gbem_2313 rubrerythrin YP_003021722.1 PFAM: transport-associated; KEGG: gbm:Gbem_2312 transport-associated YP_003021723.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: gbm:Gbem_2311 PHP domain protein YP_003021724.1 KEGG: gbm:Gbem_2310 hypothetical protein YP_003021725.1 KEGG: gbm:Gbem_2309 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003021726.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: gbm:Gbem_2308 6-phosphogluconate dehydrogenase NAD-binding YP_003021727.1 KEGG: gbm:Gbem_2307 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003021728.1 PFAM: protein of unknown function DUF1456; KEGG: gbm:Gbem_2306 protein of unknown function DUF1456 YP_003021729.1 KEGG: gbm:Gbem_2305 hypothetical protein YP_003021730.1 KEGG: gbm:Gbem_2304 hypothetical protein YP_003021731.1 PFAM: dienelactone hydrolase; KEGG: gbm:Gbem_2303 dienelactone hydrolase YP_003021732.1 PFAM: metallophosphoesterase; KEGG: gbm:Gbem_2302 metallophosphoesterase YP_003021733.1 PFAM: SMC domain protein; KEGG: gbm:Gbem_2301 SMC domain protein YP_003021734.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_2300 protein of unknown function DUF6 transmembrane YP_003021735.1 PFAM: peptidase M50; KEGG: gbm:Gbem_2299 peptidase M50 YP_003021736.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003021737.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: gbm:Gbem_2297 chromosome segregation and condensation protein ScpA YP_003021738.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: gbm:Gbem_2296 segregation and condensation protein B YP_003021739.1 PFAM: protein of unknown function DUF52; KEGG: gbm:Gbem_2295 protein of unknown function DUF52 YP_003021740.1 PFAM: hypothetical protein; polynucleotide adenylyltransferase region; phosphoesterase DHHA1; phosphoesterase RecJ domain protein; SMART: hypothetical protein; KEGG: gbm:Gbem_2294 hypothetical protein YP_003021741.1 KEGG: gbm:Gbem_2293 hypothetical protein YP_003021742.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: gbm:Gbem_2292 phosphoesterase RecJ domain protein YP_003021743.1 TIGRFAM: cysteine desulfurase; PFAM: aminotransferase class V; KEGG: gbm:Gbem_2291 cysteine desulfurase YP_003021744.1 PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: gbm:Gbem_2290 PhoH family protein YP_003021745.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_003021746.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_003021747.1 KEGG: gbm:Gbem_2287 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_003021748.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; polysaccharide biosynthesis protein CapD; KEGG: gbm:Gbem_2286 NAD-dependent epimerase/dehydratase YP_003021749.1 PFAM: septum formation initiator; KEGG: gbm:Gbem_2285 septum formation initiator YP_003021750.1 KEGG: gbm:Gbem_2284 hypothetical protein YP_003021751.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003021752.1 PFAM: sporulation domain protein; KEGG: gbm:Gbem_2282 sporulation domain protein YP_003021753.1 PFAM: response regulator receiver; general secretory system II protein E domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_2281 response regulator receiver protein YP_003021754.1 PFAM: protein of unknown function DUF329; KEGG: gbm:Gbem_2280 protein of unknown function DUF329 YP_003021755.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_003021756.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2278 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003021757.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_003021758.1 KEGG: gbm:Gbem_2276 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_003021759.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: gbm:Gbem_2275 molybdenum cofactor synthesis domain protein YP_003021760.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: gbm:Gbem_2274 molybdenum cofactor biosynthesis protein C YP_003021761.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: gbm:Gbem_2273 molybdenum cofactor synthesis domain protein YP_003021762.1 KEGG: gbm:Gbem_2272 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: radical SAM domain protein; molybdenum cofactor synthesis protein; SMART: Elongator protein 3/MiaB/NifB YP_003021763.1 PFAM: MOSC domain containing protein; KEGG: gbm:Gbem_2271 MOSC domain containing protein YP_003021764.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2270 integral membrane sensor signal transduction histidine kinase YP_003021765.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2269 Fis family transcriptional regulator YP_003021766.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gur:Gura_3388 formate dehydrogenase, subunit alpha YP_003021767.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2266 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003021768.1 PFAM: polysulphide reductase NrfD; KEGG: gbm:Gbem_2265 polysulphide reductase NrfD YP_003021769.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: gbm:Gbem_2264 formate dehydrogenase family accessory protein FdhD YP_003021770.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_003021772.1 KEGG: gur:Gura_3714 hypothetical protein YP_003021773.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2262 hemerythrin-like metal-binding protein YP_003021774.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_2261 short-chain dehydrogenase/reductase SDR YP_003021775.1 PFAM: protein of unknown function DUF302; KEGG: gbm:Gbem_2260 protein of unknown function DUF302 YP_003021776.1 PFAM: protein of unknown function DUF488; KEGG: gbm:Gbem_2259 protein of unknown function DUF488 YP_003021777.1 Catalyzes the conversion of citrate to isocitrate YP_003021778.1 KEGG: gbm:Gbem_2257 pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_003021779.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2256 response regulator receiver protein YP_003021780.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2255 hemerythrin-like metal-binding protein YP_003021781.1 KEGG: gbm:Gbem_2254 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein YP_003021782.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gbm:Gbem_2253 LuxR family transcriptional regulator YP_003021783.1 KEGG: gbm:Gbem_2252 hypothetical protein YP_003021784.1 PFAM: transketolase; transketolase domain protein; KEGG: gbm:Gbem_2251 transketolase YP_003021785.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: gbm:Gbem_2250 catalytic domain of components of various dehydrogenase complexes YP_003021786.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2249 response regulator receiver protein YP_003021787.1 PFAM: thioesterase superfamily protein; KEGG: sfu:Sfum_0232 uncharacterized domain 1 YP_003021788.1 KEGG: gbm:Gbem_2248 hypothetical protein YP_003021789.1 PFAM: rhomboid family protein; KEGG: gbm:Gbem_2247 rhomboid family protein YP_003021790.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gbm:Gbem_2246 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003021791.1 KEGG: gbm:Gbem_2245 hypothetical protein YP_003021792.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2244 response regulator receiver protein YP_003021793.1 KEGG: gbm:Gbem_2242 hypothetical protein YP_003021794.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2241 hemerythrin-like metal-binding protein YP_003021795.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2240 integral membrane sensor signal transduction histidine kinase YP_003021796.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2239 Fis family transcriptional regulator YP_003021797.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: met:M446_4947 potassium efflux system protein YP_003021798.1 KEGG: gbm:Gbem_2238 hypothetical protein YP_003021799.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: gbm:Gbem_2237 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003021800.1 KEGG: similar to potassium voltage-gated channel YP_003021801.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: gbm:Gbem_2236 sodium/hydrogen exchanger YP_003021802.1 KEGG: gbm:Gbem_2235 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003021803.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_2234 chemotaxis protein CheW YP_003021804.1 PFAM: Ppx/GppA phosphatase; metal-dependent phosphohydrolase HD sub domain; KEGG: gbm:Gbem_2233 Ppx/GppA phosphatase YP_003021805.1 KEGG: gbm:Gbem_2232 hypothetical protein YP_003021806.1 PFAM: phosphoglycerate mutase; KEGG: gbm:Gbem_2231 phosphohistidine phosphatase, SixA YP_003021807.1 KEGG: gbm:Gbem_2230 hypothetical protein YP_003021808.1 KEGG: gbm:Gbem_2229 hypothetical protein YP_003021809.1 KEGG: gbm:Gbem_2228 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003021810.1 KEGG: gbm:Gbem_2227 hypothetical protein YP_003021811.1 KEGG: gbm:Gbem_2226 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003021812.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: gbm:Gbem_2225 cobalamin (vitamin B12) biosynthesis CbiM protein YP_003021813.1 TIGRFAM: cobalt ABC transporter inner membrane protein CbiQ; PFAM: cobalt transporter; KEGG: gbm:Gbem_2224 cobalt ABC transporter inner membrane protein CbiQ YP_003021814.1 KEGG: gbm:Gbem_2223 cobalt ABC transporter ATPase subunit; TIGRFAM: cobalt ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_003021815.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_2222 cold-shock DNA-binding domain protein YP_003021816.1 PFAM: protein of unknown function DUF188; KEGG: gbm:Gbem_2221 protein of unknown function DUF188 YP_003021817.1 PFAM: heat shock protein DnaJ domain protein; KEGG: gbm:Gbem_2220 heat shock protein DnaJ domain protein YP_003021818.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gbm:Gbem_2219 Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003021819.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gbm:Gbem_2218 Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003021820.1 PFAM: ROSMUCR transcriptional regulator; KEGG: gbm:Gbem_2217 transcriptional regulator, MucR family YP_003021821.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gbm:Gbem_2216 AMP-dependent synthetase and ligase YP_003021822.1 PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_2215 major facilitator superfamily MFS_1 YP_003021823.1 KEGG: gbm:Gbem_2214 hypothetical protein YP_003021824.1 KEGG: gbm:Gbem_2213 hypothetical protein YP_003021825.1 PFAM: protein of unknown function UPF0118; KEGG: gbm:Gbem_2212 protein of unknown function UPF0118 YP_003021826.1 KEGG: gbm:Gbem_2211 hypothetical protein YP_003021827.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2210 ABC transporter YP_003021828.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2209 protein of unknown function DUF214 YP_003021829.1 KEGG: gbm:Gbem_2208 hypothetical protein YP_003021830.1 KEGG: gbm:Gbem_2206 hypothetical protein YP_003021831.1 KEGG: gbm:Gbem_2205 hypothetical protein YP_003021832.1 PFAM: manganese and iron superoxide dismutase; KEGG: gbm:Gbem_2204 manganese and iron superoxide dismutase YP_003021833.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: gme:Gmet_1347 phosphoesterase, PA-phosphatase related YP_003021834.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gbm:Gbem_2203 efflux transporter RND family, MFP subunit YP_003021835.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2202 ABC transporter YP_003021836.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2201 protein of unknown function DUF214 YP_003021837.1 PFAM: outer membrane efflux protein; KEGG: gbm:Gbem_2200 outer membrane efflux protein YP_003021838.1 KEGG: gbm:Gbem_2199 hypothetical protein YP_003021839.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gbm:Gbem_2198 UBA/ThiF-type NAD/FAD binding protein YP_003021840.1 PFAM: protein of unknown function DUF72; KEGG: gbm:Gbem_2197 protein of unknown function DUF72 YP_003021841.1 KEGG: gbm:Gbem_2196 hypothetical protein YP_003021842.1 PFAM: membrane protein of unknown function; KEGG: gbm:Gbem_2195 membrane protein of unknown function YP_003021843.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2194 indolepyruvate ferredoxin oxidoreductase, subunit alpha; SNP /replace YP_003021844.1 Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. YP_003021845.1 KEGG: gbm:Gbem_2192 phenylacetate-CoA ligase YP_003021846.1 PFAM: amino acid-binding ACT domain protein; KEGG: gbm:Gbem_2191 amino acid-binding ACT domain protein YP_003021847.1 PFAM: extracellular ligand-binding receptor; KEGG: gbm:Gbem_2190 extracellular ligand-binding receptor YP_003021848.1 PFAM: extracellular ligand-binding receptor; KEGG: gbm:Gbem_2189 extracellular ligand-binding receptor YP_003021849.1 PFAM: inner-membrane translocator; KEGG: gbm:Gbem_2188 inner-membrane translocator YP_003021850.1 PFAM: inner-membrane translocator; KEGG: gbm:Gbem_2187 inner-membrane translocator YP_003021851.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2186 ABC transporter YP_003021852.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2185 ABC transporter YP_003021853.1 KEGG: gbm:Gbem_2184 phenylacetate-CoA ligase YP_003021854.1 KEGG: gbm:Gbem_2183 cytochrome C YP_003021855.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gbm:Gbem_2178 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003021856.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gbm:Gbem_2177 glyoxalase/bleomycin resistance protein/dioxygenase YP_003021857.1 PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_2176 major facilitator superfamily MFS_1 YP_003021858.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gbm:Gbem_2175 rubredoxin-type Fe(Cys)4 protein YP_003021859.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbm:Gbem_2174 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003021860.1 Catalyzes the conversion of citrate to isocitrate YP_003021861.1 PFAM: protein of unknown function DUF156; KEGG: gbm:Gbem_2171 protein of unknown function DUF156 YP_003021862.1 KEGG: gbm:Gbem_2170 ATPase P; TIGRFAM: ATPase P; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein YP_003021863.1 KEGG: gbm:Gbem_2169 hypothetical protein YP_003021864.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2168 protein of unknown function DUF214 YP_003021865.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2167 ABC transporter YP_003021866.1 PFAM: outer membrane efflux protein; KEGG: gbm:Gbem_2166 outer membrane efflux protein YP_003021867.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: gbm:Gbem_2165 efflux transporter RND family, MFP subunit YP_003021868.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: gbm:Gbem_2164 heavy metal efflux pump, CzcA family YP_003021869.1 KEGG: gbm:Gbem_2163 hypothetical protein YP_003021870.1 KEGG: gbm:Gbem_2162 hypothetical protein YP_003021871.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2161 integral membrane sensor signal transduction histidine kinase YP_003021872.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2160 Fis family transcriptional regulator YP_003021873.1 KEGG: gbm:Gbem_2159 nucleic acid binding, OB-fold, tRNA/helicase-type YP_003021874.1 KEGG: gbm:Gbem_2158 hypothetical protein YP_003021875.1 KEGG: gbm:Gbem_2157 hypothetical protein YP_003021877.1 TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: gbm:Gbem_2156 deoxycytidine triphosphate deaminase YP_003021878.1 KEGG: gbm:Gbem_2155 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003021879.1 KEGG: gbm:Gbem_2154 periplasmic binding protein-related protein YP_003021880.1 KEGG: gbm:Gbem_2153 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003021881.1 PFAM: protein of unknown function DUF81; KEGG: gbm:Gbem_2150 protein of unknown function DUF81 YP_003021882.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: gbm:Gbem_2149 molybdenum cofactor synthesis domain protein YP_003021883.1 PFAM: protein of unknown function DUF500; KEGG: gbm:Gbem_2146 protein of unknown function DUF500 YP_003021884.1 KEGG: gbm:Gbem_2145 hypothetical protein YP_003021885.1 KEGG: geo:Geob_2566 hypothetical protein YP_003021886.1 PFAM: YHS domain protein; SMART: TRASH domain protein; KEGG: gbm:Gbem_2144 YHS domain protein YP_003021887.1 KEGG: gbm:Gbem_2964 hypothetical protein YP_003021888.1 PFAM: creatininase; KEGG: gbm:Gbem_2138 creatininase YP_003021889.1 KEGG: gbm:Gbem_2137 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; Cache domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003021890.1 SMART: RNA binding S1 domain protein; KEGG: gbm:Gbem_2136 RNA binding S1 domain protein YP_003021891.1 PFAM: protein of unknown function UPF0005; KEGG: gbm:Gbem_2135 protein of unknown function UPF0005 YP_003021893.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gbm:Gbem_2134 NADH:flavin oxidoreductase/NADH oxidase YP_003021894.1 KEGG: gbm:Gbem_2133 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding YP_003021895.1 KEGG: gbm:Gbem_2132 hypothetical protein YP_003021896.1 KEGG: gbm:Gbem_2131 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003021897.1 PFAM: fatty acid responsive transcription factor FadR domain protein; GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: gbm:Gbem_2130 GntR family transcriptional regulator YP_003021898.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2129 histidine kinase YP_003021899.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: gbm:Gbem_2128 acyl-CoA dehydrogenase domain protein YP_003021900.1 KEGG: gbm:Gbem_2127 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_003021901.1 KEGG: gbm:Gbem_1169 hypothetical protein YP_003021902.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: gbm:Gbem_2126 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_003021903.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gbm:Gbem_2125 AMP-dependent synthetase and ligase YP_003021904.1 KEGG: gbm:Gbem_2124 hypothetical protein YP_003021905.1 KEGG: gbm:Gbem_2123 hypothetical protein YP_003021906.1 KEGG: gbm:Gbem_2122 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; response regulator receiver; hypothetical protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein YP_003021907.1 KEGG: gbm:Gbem_2121 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003021908.1 KEGG: gbm:Gbem_2120 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein YP_003021909.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2119 response regulator receiver and unknown domain protein YP_003021910.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; KEGG: gbm:Gbem_2118 GAF sensor signal transduction histidine kinase YP_003021911.1 KEGG: gbm:Gbem_2117 type IV pilus assembly PilZ YP_003021912.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2116 response regulator receiver protein YP_003021913.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2115 histidine kinase YP_003021914.1 KEGG: gbm:Gbem_2114 DNA-3-methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG) YP_003021915.1 KEGG: gbm:Gbem_2113 hypothetical protein YP_003021916.1 PFAM: UspA domain protein; KEGG: gbm:Gbem_2112 UspA domain protein YP_003021917.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gbm:Gbem_2111 rubredoxin-type Fe(Cys)4 protein YP_003021918.1 KEGG: gbm:Gbem_2110 hypothetical protein YP_003021919.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2109 ABC transporter YP_003021920.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2108 protein of unknown function DUF214 YP_003021921.1 PFAM: lipolytic protein G-D-S-L family; KEGG: gbm:Gbem_2107 lipolytic protein G-D-S-L family YP_003021922.1 TIGRFAM: PfaD family protein; KEGG: gbm:Gbem_2106 PfaD family protein YP_003021923.1 KEGG: gbm:Gbem_2105 polyketide-type polyunsaturated fatty acid synthase PfaA; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: beta-ketoacyl synthase ; acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR YP_003021924.1 PFAM: beta-ketoacyl synthase ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: gbm:Gbem_2104 beta-ketoacyl synthase YP_003021925.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_003021926.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: gme:Gmet_3429 IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase YP_003021927.1 PFAM: alpha/beta hydrolase fold; KEGG: gbm:Gbem_2101 alpha/beta hydrolase fold YP_003021928.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis YP_003021929.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_2099 3-beta hydroxysteroid dehydrogenase/isomerase YP_003021930.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: gbm:Gbem_2098 4'-phosphopantetheinyl transferase YP_003021931.1 KEGG: gbm:Gbem_2097 hypothetical protein YP_003021932.1 KEGG: gbm:Gbem_2096 hypothetical protein YP_003021933.1 KEGG: gbm:Gbem_2095 hypothetical protein YP_003021934.1 KEGG: gbm:Gbem_2094 hypothetical protein YP_003021935.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: gbm:Gbem_2093 outer membrane chaperone Skp (OmpH) YP_003021936.1 KEGG: gbm:Gbem_2092 hypothetical protein YP_003021937.1 PFAM: hypothetical protein; SMART: Ig domain protein group 2 domain protein; KEGG: gbm:Gbem_2091 Ig domain protein group 2 domain protein YP_003021938.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: gbm:Gbem_2090 peptidase S10 serine carboxypeptidase YP_003021939.1 PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; KEGG: gbm:Gbem_2089 DNA/RNA non-specific endonuclease YP_003021940.1 KEGG: gbm:Gbem_2088 hypothetical protein YP_003021941.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_2087 protein of unknown function DUF224 cysteine-rich region domain protein YP_003021942.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit ; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2086 electron transfer flavoprotein subunit alpha YP_003021943.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_2085 electron transfer flavoprotein alpha/beta-subunit YP_003021944.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_2084 GCN5-related N-acetyltransferase YP_003021945.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_2083 radical SAM protein YP_003021946.1 KEGG: gbm:Gbem_2082 ADP-ribosyl-(dinitrogen reductase) hydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/crystallin J1 YP_003021947.1 PFAM: dinitrogenase reductase ADP-ribosyltransferase; KEGG: gbm:Gbem_2081 dinitrogenase reductase ADP-ribosyltransferase YP_003021948.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: gbm:Gbem_2080 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003021949.1 TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2079 ferredoxin III, nif-specific YP_003021950.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: gbm:Gbem_2078 nitrogen fixation protein NifX YP_003021952.1 in some organisms the NifE and NifN proteins are encoded separately; functions in assembly of FeMo cofactor; functions in assembly of nitrogenase MoFe YP_003021953.1 KEGG: gbm:Gbem_2076 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003021954.1 KEGG: gbm:Gbem_2075 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003021955.1 KEGG: gbm:Gbem_2074 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_003021956.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_003021957.1 KEGG: ppd:Ppro_1588 cytochrome C YP_003021958.1 KEGG: gbm:Gbem_2072 hypothetical protein YP_003021959.1 PFAM: O-methyltransferase family 2; methyltransferase type 12; KEGG: gbm:Gbem_2071 O-methyltransferase family 2 YP_003021960.1 PFAM: cytochrome C552; KEGG: gbm:Gbem_2070 cytochrome c552 YP_003021961.1 KEGG: gbm:Gbem_2069 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; PAC repeat-containing protein; GAF domain protein; ATP-binding region ATPase domain protein; PAS domain containing protein YP_003021962.1 KEGG: gbm:Gbem_2068 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; hypothetical protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003021963.1 KEGG: geo:Geob_0862 hypothetical protein YP_003021964.1 PFAM: Ppx/GppA phosphatase; KEGG: gbm:Gbem_2062 Ppx/GppA phosphatase YP_003021965.1 PFAM: Na+/Picotransporter; PhoU family protein; KEGG: gbm:Gbem_2061 Na+/Picotransporter YP_003021966.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: gbm:Gbem_2060 histone family protein DNA-binding protein YP_003021967.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: gbm:Gbem_2059 tetratricopeptide TPR_2 repeat protein YP_003021968.1 KEGG: gbm:Gbem_2058 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; methyltransferase small YP_003021969.1 KEGG: gbm:Gbem_2057 hypothetical protein YP_003021970.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_003021971.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_003021972.1 PFAM: tRNA synthetase class II (D K and N); KEGG: gbm:Gbem_2054 tRNA synthetase class II (D K and N) YP_003021973.1 KEGG: RNA-binding protein YP_003021974.1 KEGG: gbm:Gbem_2053 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003021975.1 TIGRFAM: dethiobiotin synthase; KEGG: gbm:Gbem_2052 dethiobiotin synthase YP_003021976.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: gbm:Gbem_2051 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_003021977.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; radical SAM protein; KEGG: gbm:Gbem_2050 hydrolase, TatD family YP_003021978.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2049 multi-sensor signal transduction histidine kinase YP_003021979.1 KEGG: gbm:Gbem_2048 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_003021980.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_2047 type IV pilus assembly PilZ YP_003021981.1 PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; KEGG: gbm:Gbem_2046 metal dependent phosphohydrolase YP_003021982.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: gme:Gmet_3396 IS204/IS1001/IS1096/IS1165 transposase YP_003021983.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gbm:Gbem_2045 methyltransferase type 11 YP_003021984.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: gbm:Gbem_2044 membrane protein involved in aromatic hydrocarbon degradation YP_003021985.1 PFAM: protein of unknown function DUF815; KEGG: gbm:Gbem_2043 protein of unknown function DUF815 YP_003021986.1 KEGG: gbm:Gbem_2042 hypothetical protein YP_003021987.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: gbm:Gbem_2041 transglutaminase domain protein YP_003021988.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_2038 LysR family transcriptional regulator YP_003021989.1 PFAM: class I peptide chain release factor; KEGG: gbm:Gbem_2037 class I peptide chain release factor YP_003021990.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: gur:Gura_2466 4-oxalocrotonate tautomerase YP_003021991.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: gbm:Gbem_2036 flavin reductase domain protein FMN-binding YP_003021992.1 KEGG: gbm:Gbem_2035 hypothetical protein YP_003021993.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: gbm:Gbem_2034 ADP-ribosylation/crystallin J1 YP_003021994.1 PFAM: protein of unknown function DUF479; KEGG: gbm:Gbem_2033 protein of unknown function DUF479 YP_003021995.1 KEGG: gbm:Gbem_2032 hypothetical protein YP_003021996.1 PFAM: conserved hypothetical protein; KEGG: gur:Gura_1653 hypothetical protein YP_003021997.1 KEGG: gur:Gura_1652 hypothetical protein YP_003021998.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_2031 chemotaxis protein CheW YP_003021999.1 KEGG: gbm:Gbem_2030 chemotaxis protein CheR with Tpr repeats; PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; hypothetical protein; SMART: MCP methyltransferase CheR-type; hypothetical protein YP_003022000.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_2029 chemotaxis protein CheW YP_003022001.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2028 methyl-accepting chemotaxis sensory transducer YP_003022002.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_2027 chemotaxis protein CheA YP_003022003.1 PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2026 response regulator receiver modulated CheB methylesterase YP_003022004.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_2025 response regulator receiver sensor signal transduction histidine kinase YP_003022005.1 KEGG: gbm:Gbem_2024 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003022006.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_2023 Fis family transcriptional regulator YP_003022007.1 PFAM: FAD dependent oxidoreductase; KEGG: gbm:Gbem_2022 FAD dependent oxidoreductase YP_003022008.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: gbm:Gbem_2021 exonuclease RNase T and DNA polymerase III YP_003022009.1 activates fatty acids by binding to coenzyme A YP_003022010.1 PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_2019 thioesterase superfamily protein YP_003022011.1 KEGG: gbm:Gbem_2018 hypothetical protein YP_003022012.1 PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: gbm:Gbem_2017 cytochrome bd ubiquinol oxidase subunit II YP_003022013.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: gbm:Gbem_2016 cytochrome bd ubiquinol oxidase subunit I YP_003022014.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_2015 protein of unknown function DUF6 transmembrane YP_003022015.1 PFAM: twitching mobility protein PilT; KEGG: nis:NIS_1271 hypothetical protein YP_003022017.1 PFAM: protein of unknown function DUF1568; KEGG: dol:Dole_0844 hypothetical protein YP_003022018.1 KEGG: amc:MADE_00369 hypothetical protein YP_003022019.1 KEGG: gbm:Gbem_2010 hypothetical protein YP_003022020.1 KEGG: dat:HRM2_29140 hypothetical protein YP_003022021.1 PFAM: Fibronectin type III domain protein; KEGG: gbm:Gbem_2009 fibronectin type III domain protein YP_003022022.1 PFAM: MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: gbm:Gbem_2008 MerR family transcriptional regulator YP_003022023.1 KEGG: gbm:Gbem_2007 hypothetical protein YP_003022024.1 KEGG: gbm:Gbem_2006 cytochrome C family protein YP_003022025.1 PFAM: peptidylprolyl isomerase; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: gbm:Gbem_2004 peptidylprolyl isomerase YP_003022026.1 PFAM: ROSMUCR transcriptional regulator; KEGG: gbm:Gbem_2003 transcriptional regulator, MucR family YP_003022027.1 KEGG: gbm:Gbem_2002 glucokinase; TIGRFAM: glucokinase; PFAM: glucokinase; ROK family protein YP_003022028.1 PFAM: protein of unknown function DUF330; KEGG: gbm:Gbem_2001 protein of unknown function DUF330 YP_003022029.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_2000 mammalian cell entry related domain protein YP_003022030.1 PFAM: MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: gbm:Gbem_1997 MerR family transcriptional regulator YP_003022031.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: gbm:Gbem_1996 histone family protein DNA-binding protein YP_003022032.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_003022033.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_003022034.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_003022035.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: gbm:Gbem_1992 ribosomal protein L35 YP_003022036.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_003022037.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_003022038.1 PFAM: glycosyl transferase family 9; KEGG: gbm:Gbem_1989 glycosyl transferase family 9 YP_003022039.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_1988 Fis family transcriptional regulator YP_003022040.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: gbm:Gbem_1987 GAF sensor signal transduction histidine kinase YP_003022041.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gbm:Gbem_1986 iron-containing alcohol dehydrogenase YP_003022042.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: gbm:Gbem_1985 nuclease (SNase domain protein) YP_003022043.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits YP_003022044.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: gbm:Gbem_1983 cysteine synthase A YP_003022045.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gbm:Gbem_1982 Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003022046.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: gbm:Gbem_1981 thiamine biosynthesis protein ThiS YP_003022047.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: gbm:Gbem_1980 UBA/ThiF-type NAD/FAD binding protein YP_003022048.1 SMART: Mov34/MPN/PAD-1 family protein; KEGG: gbm:Gbem_1979 Mov34/MPN/PAD-1 family protein YP_003022049.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1978 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_003022050.1 KEGG: gbm:Gbem_1977 hypothetical protein YP_003022051.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: gbm:Gbem_1976 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_003022052.1 KEGG: gbm:Gbem_1972 PHP domain protein YP_003022053.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1971 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003022054.1 PFAM: oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: gbm:Gbem_1970 oxidoreductase FAD-binding domain protein YP_003022055.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: gbm:Gbem_1969 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003022056.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: gbm:Gbem_1968 nickel-dependent hydrogenase large subunit YP_003022057.1 PFAM: heat shock protein Hsp20; KEGG: gbm:Gbem_1967 heat shock protein HSP20 YP_003022058.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: gbm:Gbem_1966 NAD-dependent epimerase/dehydratase YP_003022059.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: gbm:Gbem_1965 tetratricopeptide TPR_2 repeat protein YP_003022060.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_003022061.1 PFAM: isochorismatase hydrolase; KEGG: gbm:Gbem_1963 isochorismatase hydrolase YP_003022062.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_003022063.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003022064.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_003022065.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_003022066.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_003022067.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003022068.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_003022069.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1954 response regulator receiver protein YP_003022070.1 KEGG: gbm:Gbem_1953 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein YP_003022071.1 KEGG: gbm:Gbem_1952 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003022072.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_1950 RarD protein, DMT superfamily transporter YP_003022073.1 PFAM: sodium:neurotransmitter symporter; KEGG: gbm:Gbem_1949 sodium:neurotransmitter symporter YP_003022074.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gbm:Gbem_1948 YbaK/prolyl-tRNA synthetase associated region YP_003022075.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_1947 protein of unknown function DUF6 transmembrane YP_003022076.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_1946 ABC transporter YP_003022077.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_1945 ABC transporter YP_003022078.1 PFAM: inner-membrane translocator; KEGG: gbm:Gbem_1944 inner-membrane translocator YP_003022079.1 PFAM: inner-membrane translocator; KEGG: gbm:Gbem_1943 inner-membrane translocator YP_003022080.1 KEGG: gbm:Gbem_1942 hypothetical protein YP_003022081.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: gbm:Gbem_1941 heavy metal efflux pump, CzcA family YP_003022082.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gbm:Gbem_1940 efflux transporter RND family, MFP subunit YP_003022083.1 PFAM: outer membrane efflux protein; KEGG: gbm:Gbem_1939 outer membrane efflux protein YP_003022084.1 KEGG: gbm:Gbem_1938 hypothetical protein YP_003022085.1 KEGG: gbm:Gbem_1937 hypothetical protein YP_003022086.1 PFAM: protein of unknown function UPF0182; KEGG: ppd:Ppro_3567 hypothetical protein YP_003022087.1 KEGG: gbm:Gbem_2938 import inner membrane translocase subunit Tim44 YP_003022088.1 PFAM: integral membrane protein TerC; KEGG: gbm:Gbem_1936 integral membrane protein TerC YP_003022089.1 PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_1935 peptidase M48 Ste24p YP_003022090.1 PFAM: extracellular ligand-binding receptor; KEGG: gbm:Gbem_1934 extracellular ligand-binding receptor YP_003022091.1 KEGG: gbm:Gbem_1933 hypothetical protein YP_003022092.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_1932 ABC transporter YP_003022093.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gbm:Gbem_1931 polar amino acid ABC transporter inner membrane protein YP_003022094.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: gbm:Gbem_1930 extracellular solute-binding protein family 3 YP_003022095.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_1929 protein of unknown function DUF6 transmembrane YP_003022096.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; KEGG: gbm:Gbem_1928 aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003022097.1 PFAM: conserved hypothetical protein; KEGG: glo:Glov_1804 hypothetical protein YP_003022098.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ppd:Ppro_1074 ABC transporter YP_003022099.1 KEGG: glo:Glov_1803 hypothetical protein YP_003022100.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: gbm:Gbem_1927 prevent-host-death family protein YP_003022101.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: gbm:Gbem_1926 addiction module toxin, Txe/YoeB family YP_003022102.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: gbm:Gbem_1925 3-demethylubiquinone-9 3-methyltransferase YP_003022103.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sfu:Sfum_3431 short-chain dehydrogenase/reductase SDR YP_003022104.1 PFAM: protein of unknown function UPF0150; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cti:RALTA_B2151 transcription regulator, cro/C1-type DNA-binding domain YP_003022105.1 KEGG: psa:PST_3284 permease YP_003022107.1 KEGG: tcx:Tcr_1148 hypothetical protein YP_003022108.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: mca:MCA1906 cytochrome C peroxidase family protein YP_003022109.1 PFAM: Fibronectin type III domain protein; KEGG: gbm:Gbem_1905 hypothetical protein YP_003022110.1 KEGG: similar to predicted protein YP_003022111.1 catalyzes branch migration in Holliday junction intermediates YP_003022112.1 PFAM: Domain of unknown function DUF1858; KEGG: gbm:Gbem_1902 hypothetical protein YP_003022113.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_003022114.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; RimK domain protein ATP-grasp; MGS domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; KEGG: gbm:Gbem_1900 carbamoyl-phosphate synthase, large subunit YP_003022115.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_1899 radical SAM protein YP_003022116.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_003022117.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; amidohydrolase; KEGG: gbm:Gbem_1897 dihydroorotase YP_003022118.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_003022119.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_003022120.1 KEGG: bpm:BURPS1710b_2031 hypothetical protein YP_003022121.1 PFAM: protein of unknown function UPF0044; KEGG: gbm:Gbem_1894 protein of unknown function UPF0044 YP_003022122.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_003022123.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase ; RNA methylase; KEGG: gbm:Gbem_1892 methyltransferase YP_003022124.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_003022125.1 PFAM: Domain of unknown function DUF1858; KEGG: gbm:Gbem_1890 hypothetical protein YP_003022126.1 PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_1889 XRE family transcriptional regulator YP_003022127.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_003022128.1 PFAM: carbonic anhydrase; KEGG: gbm:Gbem_1887 carbonic anhydrase YP_003022129.1 KEGG: geo:Geob_0572 hypothetical protein YP_003022130.1 TIGRFAM: arginase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: gbm:Gbem_1886 arginase YP_003022131.1 KEGG: gbm:Gbem_1885 hypothetical protein YP_003022132.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1884 methyl-accepting chemotaxis sensory transducer YP_003022133.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_003022134.1 KEGG: gbm:Gbem_1882 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_003022135.1 KEGG: gbm:Gbem_1881 cytochrome C family protein YP_003022136.1 PFAM: aminotransferase class I and II; KEGG: gbm:Gbem_1880 aminotransferase class I and II YP_003022137.1 catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM YP_003022138.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: gbm:Gbem_1878 tyrosine recombinase XerD YP_003022139.1 KEGG: gbm:Gbem_1877 UTP-GlnB uridylyltransferase, GlnD; TIGRFAM: protein-P-II uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; DNA polymerase beta domain protein region; amino acid-binding ACT domain protein; protein of unknown function DUF294 nucleotidyltransferase YP_003022140.1 KEGG: gbm:Gbem_1876 hypothetical protein YP_003022141.1 PFAM: chorismate mutase; KEGG: gbm:Gbem_1875 chorismate mutase YP_003022142.1 TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: gbm:Gbem_1874 L-aspartate oxidase YP_003022143.1 PFAM: lytic transglycosylase catalytic; KEGG: gbm:Gbem_1873 lytic transglycosylase catalytic protein YP_003022144.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gbm:Gbem_1872 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_003022145.1 PFAM: prophage CP4-57 regulator; KEGG: ecm:EcSMS35_0941 transcriptional regulator, AlpA family YP_003022146.1 KEGG: csa:Csal_1358 hypothetical protein YP_003022147.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: gbm:Gbem_1022 OmpA/MotB domain protein YP_003022149.1 PFAM: conjugation TrbI family protein; KEGG: mpo:Mpop_3095 conjugation TrbI family protein YP_003022150.1 TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pla:Plav_1842 P-type conjugative transfer protein TrbG YP_003022151.1 PFAM: Conjugal transfer protein; KEGG: bpt:Bpet2213 conjugal transfer protein TrbF YP_003022152.1 TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: gme:Gmet_A3573 type IV secretory pathway TrbL components-like YP_003022153.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: bpr:GBP346_A0974 P-type conjugative transfer protein TrbJ YP_003022154.1 type IV secretion system VirB4 family YP_003022155.1 PFAM: type IV secretory pathway VirB3 family protein; KEGG: dac:Daci_2697 conjugal transfer TrbD transmembrane protein YP_003022156.1 PFAM: Conjugal transfer protein TrbC; KEGG: cak:Caul_5223 conjugal transfer protein TrbC YP_003022157.1 TIGRFAM: ATPase P; PFAM: type II secretion system protein E; KEGG: xau:Xaut_2878 ATPase P YP_003022158.1 KEGG: ajs:Ajs_4194 hypothetical protein YP_003022159.1 KEGG: hypothetical protein YP_003022160.1 TIGRFAM: relaxase; PFAM: TrwC relaxase; KEGG: bgl:bglu_4p0580 TrwC protein YP_003022161.1 PFAM: lytic transglycosylase catalytic; KEGG: pna:Pnap_2494 lytic transglycosylase, catalytic YP_003022162.1 KEGG: cak:Caul_5335 conjugal transfer protein TraF YP_003022163.1 KEGG: sat:SYN_00875 response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; SMART: response regulator receiver; PAC repeat-containing protein; PAS domain containing protein YP_003022164.1 PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; KEGG: nmu:Nmul_A0334 response regulator receiver (CheY-like) modulated CheB methylesterase YP_003022165.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: dal:Dalk_4666 chemotaxis protein CheA YP_003022166.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: nmu:Nmul_A0332 methyl-accepting chemotaxis sensory transducer YP_003022167.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: bgl:bglu_2g19940 CheW YP_003022168.1 KEGG: pzu:PHZ_c0691 chemotaxis protein methyltransferase CheR; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; hypothetical protein YP_003022169.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: geo:Geob_3505 response regulator receiver protein YP_003022170.1 PFAM: type II secretion system protein E; response regulator receiver; general secretory system II protein E domain protein; SMART: response regulator receiver; KEGG: geo:Geob_3506 response regulator receiver protein YP_003022171.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: geo:Geob_3507 histidine kinase YP_003022172.1 KEGG: geo:Geob_3508 hypothetical protein YP_003022173.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; KEGG: geo:Geob_3509 response regulator receiver modulated metal dependent phosphohydrolase YP_003022174.1 PFAM: response regulator receiver; PAS fold domain protein; SMART: response regulator receiver; PAS domain containing protein; KEGG: gme:Gmet_3477 PAS/PAC sensor hybrid histidine kinase YP_003022175.1 KEGG: geo:Geob_3512 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003022176.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: glo:Glov_2722 response regulator receiver modulated metal dependent phosphohydrolase YP_003022177.1 KEGG: glo:Glov_0261 hypothetical protein YP_003022178.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: glo:Glov_2342 hypothetical protein YP_003022179.1 KEGG: glo:Glov_2341 hypothetical protein YP_003022180.1 KEGG: sfu:Sfum_3890 hypothetical protein YP_003022181.1 KEGG: sfu:Sfum_3982 tetratricopeptide TPR_2 repeat protein YP_003022182.1 KEGG: geo:Geob_3222 S-layer domain protein YP_003022183.1 PFAM: protein of unknown function DUF400; KEGG: geo:Geob_3221 protein of unknown function DUF400 YP_003022184.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: xca:xccb100_4465 hypothetical protein YP_003022186.1 PFAM: CHAP domain containing protein; KEGG: gur:Gura_0739 Cna B domain-containing protein YP_003022188.1 PFAM: protein of unknown function DUF400; KEGG: dol:Dole_0036 hypothetical protein YP_003022189.1 KEGG: dol:Dole_2071 hypothetical protein YP_003022190.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: dol:Dole_2005 peptidase C14 caspase catalytic subunit P20 YP_003022191.1 PFAM: transposase IS3/IS911 family protein; KEGG: dia:Dtpsy_3328 transposase IS3/IS911 family protein YP_003022192.1 PFAM: KWG Leptospira repeat protein; KEGG: geo:Geob_0055 hypothetical protein YP_003022193.1 KEGG: glo:Glov_0261 hypothetical protein YP_003022195.1 KEGG: ppd:Ppro_0206 hypothetical protein YP_003022196.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: gbm:Gbem_2683 RNA polymerase, sigma 70 subunit, RpoD family YP_003022197.1 KEGG: gbm:Gbem_2385 hypothetical protein YP_003022198.1 KEGG: rso:RS02050 signal peptide protein YP_003022199.1 PFAM: protein of unknown function DUF159; KEGG: gsu:GSU0040 hypothetical protein YP_003022200.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: ppd:Ppro_3663 nuclease YP_003022202.1 KEGG: bvi:Bcep1808_7629 hypothetical protein YP_003022203.1 KEGG: mch:Mchl_4742 hypothetical protein YP_003022207.1 KEGG: ppd:Ppro_0225 hypothetical protein YP_003022208.1 PFAM: ROSMUCR transcriptional regulator; KEGG: gbm:Gbem_2003 transcriptional regulator, MucR family YP_003022209.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: ppd:Ppro_3744 nuclease YP_003022210.1 KEGG: gme:Gmet_3477 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003022212.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gur:Gura_2874 IstB ATP binding domain-containing protein YP_003022213.1 PFAM: integrase; KEGG: gur:Gura_2875 integrase catalytic subunit YP_003022214.1 KEGG: pat:Patl_2626 hypothetical protein YP_003022217.1 PFAM: integrase family protein; KEGG: gur:Gura_3082 phage integrase family protein; SNP /replace=T YP_003022218.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: glo:Glov_2586 addiction module antidote protein, CopG/Arc/MetJ family YP_003022219.1 KEGG: gbm:Gbem_1842 hypothetical protein YP_003022220.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_1829 transcriptional regulator, XRE family YP_003022221.1 PFAM: protein of unknown function DUF891; KEGG: gbm:Gbem_1828 protein of unknown function DUF891 YP_003022222.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: gbm:Gbem_1826 methyl-accepting chemotaxis sensory transducer YP_003022223.1 PFAM: ATP-binding region ATPase domain protein; GCN5-related N-acetyltransferase; KEGG: ppd:Ppro_0717 histidine kinase YP_003022224.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: bte:BTH_I1619 TPR domain-containing protein YP_003022225.1 PFAM: protein of unknown function DUF81; KEGG: gbm:Gbem_1825 protein of unknown function DUF81 YP_003022226.1 KEGG: glo:Glov_0059 HicB family protein YP_003022227.1 PFAM: UbiA prenyltransferase; KEGG: gbm:Gbem_1824 UbiA prenyltransferase YP_003022228.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: gbm:Gbem_1823 type I phosphodiesterase/nucleotide pyrophosphatase YP_003022229.1 PFAM: xylose isomerase; KEGG: gbm:Gbem_1822 xylose isomerase domain protein TIM barrel YP_003022230.1 KEGG: gbm:Gbem_1821 hypothetical protein YP_003022231.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_1820 hypothetical protein YP_003022232.1 PFAM: FG-GAP repeat protein; PKD domain containing protein; SMART: PKD domain containing protein; KEGG: gbm:Gbem_1819 PKD domain containing protein YP_003022233.1 PFAM: TatD-related deoxyribonuclease; KEGG: gbm:Gbem_1818 TatD-related deoxyribonuclease YP_003022234.1 KEGG: geo:Geob_0303 hypothetical protein YP_003022235.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_003022236.1 KEGG: gbm:Gbem_1815 cycloartenol synthase-like protein YP_003022237.1 KEGG: gbm:Gbem_1814 hypothetical protein YP_003022238.1 KEGG: gbm:Gbem_1813 hypothetical protein YP_003022239.1 PFAM: von Willebrand factor A; SMART: von Willebrand factor A; KEGG: gbm:Gbem_1812 von Willebrand factor A YP_003022240.1 PFAM: von Willebrand factor A; SMART: von Willebrand factor A; KEGG: gbm:Gbem_1811 von Willebrand factor A YP_003022241.1 KEGG: gbm:Gbem_1810 hypothetical protein YP_003022242.1 PFAM: protein of unknown function DUF58; SMART: von Willebrand factor A; KEGG: gbm:Gbem_1809 protein of unknown function DUF58 YP_003022243.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: gbm:Gbem_1808 ATPase AAA YP_003022244.1 KEGG: gbm:Gbem_1807 Fis family transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA YP_003022245.1 KEGG: gbm:Gbem_1806 integral membrane sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein YP_003022246.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: gbm:Gbem_1805 nucleotide sugar dehydrogenase YP_003022247.1 TIGRFAM: EpsI family protein; KEGG: gbm:Gbem_1804 EpsI family protein YP_003022248.1 TIGRFAM: eight transmembrane protein EpsH; KEGG: gbm:Gbem_1803 eight transmembrane protein EpsH YP_003022249.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: gbm:Gbem_1802 Crp/Fnr family transcriptional regulator YP_003022250.1 PFAM: VanZ family protein; KEGG: gbm:Gbem_1801 VanZ family protein YP_003022251.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_4011 hypothetical protein YP_003022252.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: gbm:Gbem_1799 fibronectin type III domain protein YP_003022253.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: gbm:Gbem_1796 fibronectin type III domain protein YP_003022254.1 PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_2467 glycosyl transferase YP_003022255.1 KEGG: hch:HCH_02734 coenzyme F390 synthetase YP_003022256.1 PFAM: polysaccharide biosynthesis protein; KEGG: ppr:PBPRA2684 hypothetical protein YP_003022257.1 KEGG: hha:Hhal_0761 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003022258.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: hha:Hhal_0760 EpsP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_003022259.1 PFAM: glycosyl transferase group 1; KEGG: nha:Nham_3034 glycosyl transferase, group 1 YP_003022260.1 PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1788 O-antigen polymerase YP_003022261.1 PFAM: glycosyl transferase group 1; KEGG: ppd:Ppro_2463 glycosyl transferase, group 1 YP_003022262.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_1786 radical SAM protein YP_003022263.1 KEGG: gbm:Gbem_1785 hypothetical protein YP_003022264.1 PFAM: formyl transferase; KEGG: gbm:Gbem_1784 formyl transferase YP_003022265.1 KEGG: gbm:Gbem_1783 cellulose biosynthesis (CelD) protein YP_003022266.1 PFAM: polysaccharide deacetylase; KEGG: gbm:Gbem_1782 polysaccharide deacetylase YP_003022267.1 KEGG: gbm:Gbem_1781 hypothetical protein YP_003022268.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_1780 glycosyl transferase group 1 YP_003022269.1 KEGG: gbm:Gbem_1779 transferase hexapeptide repeat containing protein YP_003022270.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; KEGG: gbm:Gbem_1778 asparagine synthase (glutamine-hydrolyzing) YP_003022271.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1777 glycosyl transferase family 2 YP_003022272.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1776 glycosyl transferase family 2 YP_003022273.1 TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: gbm:Gbem_1775 FemAB-related protein, PEP-Cterm system-associated YP_003022274.1 TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: gbm:Gbem_1774 polysaccharide deactylase family protein, PEP-Cterm locus subfamily YP_003022275.1 TIGRFAM: PEP-CTERM system associated protein; KEGG: gbm:Gbem_1773 hypothetical protein YP_003022276.1 TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: ATPase AAA; KEGG: gbm:Gbem_1772 secretion ATPase, PEP-Cterm locus subfamily YP_003022277.1 TIGRFAM: capsular exopolysaccharide family; KEGG: gbm:Gbem_1771 exopolysaccharide/PEPCTERM locus tyrosine autokinase YP_003022278.1 TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: gbm:Gbem_1770 polysaccharide chain length determinant protein, PEP-Cterm locus subfamily YP_003022279.1 TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: gbm:Gbem_1769 polysaccharide export protein, PEP-Cterm system-associated YP_003022280.1 TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: gbm:Gbem_1768 sugar transferase, PEP-Cterm system associated YP_003022281.1 KEGG: gbm:Gbem_1767 PEP-Cterm system TPR-repeat lipoprotein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: hypothetical protein; hypothetical protein; SMART: hypothetical protein YP_003022282.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_1766 hypothetical protein YP_003022283.1 TIGRFAM: CAAX prenyl protease-related protein; PFAM: hypothetical protein; KEGG: gbm:Gbem_1765 CAAX prenyl protease-related protein YP_003022284.1 KEGG: gbm:Gbem_1764 hypothetical protein YP_003022285.1 KEGG: gbm:Gbem_1763 hypothetical protein YP_003022286.1 KEGG: gbm:Gbem_1762 flagellin domain protein YP_003022287.1 PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: gbm:Gbem_1761 peptidase M1 membrane alanine aminopeptidase YP_003022288.1 PFAM: protein of unknown function DUF399; KEGG: gbm:Gbem_1760 protein of unknown function DUF399 YP_003022289.1 KEGG: gbm:Gbem_1759 hypothetical protein YP_003022290.1 KEGG: gbm:Gbem_1758 transcriptional repressor, LexA family; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_003022291.1 KEGG: gbm:Gbem_1757 hypothetical protein YP_003022292.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: gbm:Gbem_1756 UMUC domain protein DNA-repair protein YP_003022293.1 KEGG: gbm:Gbem_1755 hypothetical protein YP_003022294.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: gbm:Gbem_1754 nucleotide sugar dehydrogenase YP_003022295.1 This protein performs the mismatch recognition step during the DNA repair process YP_003022296.1 KEGG: gbm:Gbem_1752 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003022297.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: gbm:Gbem_1751 MJ0042 family finger-like protein YP_003022298.1 PFAM: protein of unknown function DUF1573; KEGG: gbm:Gbem_1750 protein of unknown function DUF1573 YP_003022299.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gme:Gmet_0529 methyl-accepting chemotaxis sensory transducer YP_003022300.1 KEGG: gbm:Gbem_1857 hypothetical protein YP_003022301.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_1866 PAS/PAC sensor signal transduction histidine kinase YP_003022302.1 TIGRFAM: phosphate ABC transporter inner membrane protein PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gbm:Gbem_1720 phosphate ABC transporter inner membrane protein PstC YP_003022303.1 TIGRFAM: phosphate ABC transporter inner membrane protein PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gbm:Gbem_1719 phosphate ABC transporter inner membrane protein PstA YP_003022304.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_003022305.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: gbm:Gbem_1717 phosphate uptake regulator, PhoU YP_003022306.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gbm:Gbem_1716 phosphate ABC transporter periplasmic phosphate-binding protein YP_003022307.1 PFAM: protein of unknown function DUF167; KEGG: gbm:Gbem_1715 protein of unknown function DUF167 YP_003022308.1 KEGG: gbm:Gbem_1714 hypothetical protein YP_003022309.1 KEGG: gbm:Gbem_1713 hypothetical protein YP_003022310.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: gbm:Gbem_1712 MJ0042 family finger-like protein YP_003022311.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gbm:Gbem_1710 phosphate ABC transporter periplasmic phosphate-binding protein YP_003022312.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1846 transcriptional regulator YP_003022313.1 KEGG: gbm:Gbem_1708 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_003022314.1 PFAM: aldehyde dehydrogenase; KEGG: gbm:Gbem_1707 aldehyde dehydrogenase YP_003022316.1 PFAM: ferritin; KEGG: gbm:Gbem_1706 ferritin Dps family protein YP_003022317.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gbm:Gbem_1704 AraC family transcriptional regulator YP_003022318.1 KEGG: gbm:Gbem_1703 hypothetical protein YP_003022319.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_1702 protein of unknown function DUF6 transmembrane YP_003022320.1 KEGG: gbm:Gbem_1701 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein YP_003022321.1 PFAM: protein of unknown function DUF204; integral membrane protein TerC; KEGG: gbm:Gbem_1700 protein of unknown function DUF204 YP_003022322.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_1699 radical SAM protein YP_003022324.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: gbm:Gbem_1698 alkylphosphonate utilization operon protein PhnA YP_003022325.1 PFAM: ABC transporter; TOBE domain protein; SMART: ATPase AAA; KEGG: gbm:Gbem_1695 ABC transporter YP_003022326.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gbm:Gbem_1694 binding-protein-dependent transport systems inner membrane component YP_003022327.1 KEGG: gbm:Gbem_1693 ABC-type tungstate transporter permease-like protein YP_003022328.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain protein; regulatory protein LysR; KEGG: gbm:Gbem_1692 transcriptional regulator, ModE family YP_003022329.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gbm:Gbem_1691 methyltransferase type 11 YP_003022330.1 KEGG: gbm:Gbem_1690 hypothetical protein YP_003022331.1 KEGG: gbm:Gbem_1689 hypothetical protein YP_003022332.1 KEGG: gbm:Gbem_1688 hypothetical protein YP_003022333.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_1687 glycosyl transferase group 1 YP_003022334.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: gbm:Gbem_1686 oxidoreductase domain protein YP_003022335.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: geo:Geob_3242 alcohol dehydrogenase GroES domain protein YP_003022336.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: gbm:Gbem_1684 NAD-dependent epimerase/dehydratase YP_003022337.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: gbm:Gbem_1683 NAD-dependent epimerase/dehydratase YP_003022338.1 KEGG: gbm:Gbem_1682 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain YP_003022339.1 TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: gbm:Gbem_1681 glycogen debranching enzyme YP_003022340.1 KEGG: gbm:Gbem_1672 hypothetical protein YP_003022341.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: gbm:Gbem_1671 transport-associated YP_003022342.1 KEGG: gbm:Gbem_1670 hypothetical protein YP_003022343.1 KEGG: gbm:Gbem_1669 phage SPO1 DNA polymerase-related protein YP_003022344.1 KEGG: gbm:Gbem_1668 hypothetical protein YP_003022345.1 KEGG: gbm:Gbem_1667 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003022346.1 PFAM: beta-lactamase; KEGG: gbm:Gbem_1666 beta-lactamase YP_003022347.1 KEGG: gbm:Gbem_1665 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region YP_003022348.1 PFAM: FAD dependent oxidoreductase; HI0933 family protein; KEGG: gbm:Gbem_1664 FAD dependent oxidoreductase YP_003022349.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1663 response regulator receiver protein YP_003022350.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_1662 response regulator receiver sensor signal transduction histidine kinase YP_003022351.1 PFAM: UspA domain protein; KEGG: gbm:Gbem_1661 UspA domain protein YP_003022352.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1660 response regulator receiver protein YP_003022353.1 SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_1659 helix-turn-helix domain protein YP_003022354.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_1658 hypothetical protein YP_003022355.1 PFAM: PfkB domain protein; KEGG: gbm:Gbem_1657 PfkB domain protein YP_003022356.1 KEGG: gbm:Gbem_1656 methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003022357.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_003022358.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_003022359.1 PFAM: AMMECR1 domain protein; KEGG: gbm:Gbem_1653 AMMECR1 domain protein YP_003022360.1 PFAM: citrate synthase; KEGG: gbm:Gbem_1652 citrate synthase YP_003022361.1 PFAM: peptidase M24; creatinase; KEGG: gbm:Gbem_1651 peptidase M24 YP_003022362.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gbm:Gbem_1650 AMP-dependent synthetase and ligase YP_003022363.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: gbm:Gbem_1648 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003022364.1 PFAM: protein of unknown function DUF502; KEGG: gbm:Gbem_1647 protein of unknown function DUF502 YP_003022365.1 KEGG: gbm:Gbem_1646 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003022366.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_003022367.1 TIGRFAM: serine O-acetyltransferase; KEGG: gbm:Gbem_1644 serine O-acetyltransferase YP_003022368.1 KEGG: gbm:Gbem_1643 MiaB-like tRNA modifying enzyme; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003022369.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_1642 response regulator receiver sensor signal transduction histidine kinase YP_003022370.1 KEGG: gbm:Gbem_1641 hypothetical protein YP_003022371.1 PFAM: protein of unknown function UPF0153; KEGG: gbm:Gbem_1640 protein of unknown function UPF0153 YP_003022372.1 KEGG: gbm:Gbem_1639 hypothetical protein YP_003022373.1 SMART: ATPase AAA; KEGG: gbm:Gbem_1638 ATPase AAA YP_003022374.1 KEGG: gur:Gura_3831 adenylyl-sulfate kinase; TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase YP_003022375.1 KEGG: gbm:Gbem_1637 hypothetical protein YP_003022376.1 KEGG: gbm:Gbem_1637 hypothetical protein YP_003022377.1 KEGG: gbm:Gbem_1636 hypothetical protein YP_003022378.1 KEGG: gbm:Gbem_1635 hypothetical protein YP_003022379.1 KEGG: gbm:Gbem_1634 hypothetical protein YP_003022380.1 PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_1633 polysaccharide biosynthesis protein CapD YP_003022381.1 KEGG: gur:Gura_1479 MazF family transcriptional regulator YP_003022382.1 PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1478 transcriptional regulator/antitoxin, MazE YP_003022384.1 KEGG: gbm:Gbem_1632 hypothetical protein YP_003022385.1 PFAM: sugar transferase; KEGG: gme:Gmet_1337 sugar transferase YP_003022386.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: gme:Gmet_1335 NAD-dependent epimerase/dehydratase YP_003022387.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gbm:Gbem_1134 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III YP_003022388.1 KEGG: sml:Smlt0652 xanthan biosynthesis protein; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; cupin YP_003022389.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gur:Gura_3801 NAD-dependent epimerase/dehydratase YP_003022390.1 PFAM: glycosyl transferase family 2; KEGG: rle:RL0811 beta-glycosyltransferase YP_003022391.1 PFAM: glycosyl transferase group 1; KEGG: ypy:YPK_3184 glycosyl transferase group 1 YP_003022392.1 KEGG: msu:MS0764 AzlC protein YP_003022393.1 PFAM: glycosyl transferase group 1; KEGG: dat:HRM2_25360 lipopolysaccharide N-acetyl-glycoaminyltransferase YP_003022394.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3798 glycosyl transferase YP_003022395.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_2575 glycosyl transferase group 1 YP_003022396.1 PFAM: formyl transferase; KEGG: bcs:BCAN_A0529 bifunctional polymyxin resistance ArnA protein YP_003022397.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gbm:Gbem_2577 DegT/DnrJ/EryC1/StrS aminotransferase YP_003022398.1 KEGG: spl:Spea_3274 hypothetical protein YP_003022399.1 PFAM: polysaccharide biosynthesis protein; KEGG: dol:Dole_0532 polysaccharide biosynthesis protein YP_003022400.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: sit:TM1040_1482 GDP-mannose 4,6-dehydratase YP_003022401.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: glo:Glov_1511 lipopolysaccharide biosynthesis protein YP_003022402.1 PFAM: polysaccharide export protein; KEGG: gbm:Gbem_1604 polysaccharide export protein YP_003022403.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: gbm:Gbem_1603 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family YP_003022404.1 KEGG: gbm:Gbem_1602 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); hypothetical protein YP_003022405.1 KEGG: gur:Gura_3208 hypothetical protein YP_003022406.1 KEGG: sun:SUN_2078 hypothetical protein YP_003022407.1 PFAM: DNA polymerase beta domain protein region; KEGG: ppd:Ppro_2462 DNA polymerase, beta-like region YP_003022408.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_003022409.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003022410.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_003022411.1 PFAM: EAL domain protein; metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: gbm:Gbem_1598 diguanylate phosphodiesterase YP_003022412.1 KEGG: gbm:Gbem_1597 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver YP_003022413.1 PFAM: CheD family protein; KEGG: gbm:Gbem_1596 chemotaxis protein CheDs YP_003022414.1 KEGG: gbm:Gbem_1595 chemotaxis protein CheR; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003022415.1 PFAM: CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_1594 chemotaxis protein CheA YP_003022416.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1593 response regulator receiver protein YP_003022417.1 KEGG: gbm:Gbem_1592 sulfate transporter/antisigma-factor antagonist STAS YP_003022418.1 KEGG: gbm:Gbem_1591 methyl-accepting chemotaxis sensory transducer YP_003022419.1 PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: gbm:Gbem_1590 iron (metal) dependent repressor, DtxR family YP_003022420.1 KEGG: gbm:Gbem_1589 hypothetical protein YP_003022421.1 TIGRFAM: ferrous iron transporter B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Miro domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: gbm:Gbem_1588 ferrous iron transporter B YP_003022422.1 PFAM: ferric-uptake regulator; KEGG: gbm:Gbem_1587 ferric uptake regulator, Fur family YP_003022423.1 KEGG: gbm:Gbem_1586 hypothetical protein YP_003022424.1 PFAM: cytochrome C class I; KEGG: gbm:Gbem_1585 cytochrome c class I YP_003022425.1 KEGG: gbm:Gbem_1584 hypothetical protein YP_003022426.1 PFAM: aminotransferase class V; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_1583 aminotransferase class V YP_003022427.1 TIGRFAM: methyltransferase; KEGG: gbm:Gbem_1582 hypothetical protein YP_003022428.1 KEGG: gbm:Gbem_1581 hypothetical protein YP_003022429.1 KEGG: gbm:Gbem_1580 hypothetical protein YP_003022430.1 PFAM: beta-lactamase; KEGG: gbm:Gbem_1579 beta-lactamase YP_003022431.1 KEGG: gbm:Gbem_1578 hypothetical protein YP_003022432.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gur:Gura_3374 formate dehydrogenase, subunit alpha YP_003022433.1 PFAM: formate dehydrogenase transmembrane domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1574 formate dehydrogenase transmembrane domain protein YP_003022434.1 TIGRFAM: formate dehydrogenase, subunit gamma; KEGG: gbm:Gbem_1573 formate dehydrogenase, subunit gamma YP_003022435.1 PFAM: formate dehydrogenase accessory protein; KEGG: gbm:Gbem_1572 uncharacterized protein involved in formate dehydrogenase formation-like protein YP_003022436.1 KEGG: gbm:Gbem_1571 formate dehydrogenase family accessory protein FdhD YP_003022437.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_1570 ABC transporter YP_003022438.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: geo:Geob_0185 hypothetical protein YP_003022439.1 PFAM: plasmid stabilization system; KEGG: geo:Geob_0186 plasmid stabilization system YP_003022440.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: nucleotidyltransferase substrate binding protein HI0074; KEGG: vei:Veis_3009 HI0074 family nucleotidyltransferase substrate binding protein YP_003022441.1 KEGG: gbm:Gbem_1569 cysteine desulfurase NifS; TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003022442.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: gbm:Gbem_1568 Fe-S cluster assembly protein NifU YP_003022443.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gbm:Gbem_1567 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_003022444.1 KEGG: gbm:Gbem_1566 hypothetical protein YP_003022445.1 PFAM: NUDIX hydrolase; KEGG: gbm:Gbem_1565 NUDIX hydrolase YP_003022446.1 PFAM: protein of unknown function DUF178; KEGG: gbm:Gbem_1564 protein of unknown function DUF178 YP_003022447.1 TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein; KEGG: gbm:Gbem_1563 glycine cleavage system protein H YP_003022448.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; RimK domain protein ATP-grasp; carbamoyl-phosphate synthetase large chain domain protein; KEGG: gbm:Gbem_1562 acetyl-CoA carboxylase, biotin carboxylase YP_003022449.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: gbm:Gbem_1561 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_003022450.1 PFAM: peptidase M24; creatinase; KEGG: gbm:Gbem_1560 peptidase M24 YP_003022451.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_003022452.1 KEGG: gbm:Gbem_1558 hypothetical protein YP_003022453.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_1557 tetratricopeptide TPR_2 repeat protein YP_003022454.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_003022455.1 PFAM: shikimate kinase; KEGG: gbm:Gbem_1555 shikimate kinase YP_003022456.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_003022457.1 KEGG: swp:swp_1740 Ig-like, group 1 YP_003022459.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: gbm:Gbem_1550 type IV pilus secretin PilQ YP_003022460.1 KEGG: gbm:Gbem_1549 type IV pilus assembly protein PilP YP_003022461.1 PFAM: pilus assembly protein PilO; KEGG: gbm:Gbem_1548 pilus assembly protein PilO YP_003022462.1 PFAM: fimbrial assembly family protein; KEGG: gbm:Gbem_1547 fimbrial assembly family protein YP_003022463.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: gbm:Gbem_1546 type IV pilus assembly protein PilM YP_003022464.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_1545 transcriptional regulator, XRE family YP_003022465.1 KEGG: gbm:Gbem_1544 hypothetical protein YP_003022466.1 KEGG: gbm:Gbem_1543 hypothetical protein YP_003022467.1 KEGG: gbm:Gbem_1542 hypothetical protein YP_003022468.1 KEGG: gbm:Gbem_1541 hypothetical protein YP_003022469.1 KEGG: gbm:Gbem_2341 hypothetical protein YP_003022470.1 KEGG: gbm:Gbem_2342 hypothetical protein YP_003022471.1 KEGG: gbm:Gbem_2343 hypothetical protein YP_003022472.1 KEGG: gbm:Gbem_2344 hypothetical protein YP_003022473.1 KEGG: gbm:Gbem_2345 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein YP_003022474.1 KEGG: gbm:Gbem_2346 hypothetical protein YP_003022475.1 KEGG: gbm:Gbem_1535 hypothetical protein YP_003022476.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_1534 Fis family transcriptional regulator YP_003022477.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1533 integral membrane sensor signal transduction histidine kinase YP_003022478.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: gbm:Gbem_1532 peptidase A24A domain protein YP_003022479.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_003022480.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1530 response regulator receiver protein YP_003022481.1 PFAM: beta-lactamase; KEGG: gbm:Gbem_1529 beta-lactamase YP_003022482.1 KEGG: gbm:Gbem_1528 hypothetical protein YP_003022483.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_003022484.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_003022485.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_003022486.1 KEGG: gbm:Gbem_1524 hypothetical protein YP_003022487.1 PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1523 integral membrane sensor signal transduction histidine kinase YP_003022488.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_1522 Fis family transcriptional regulator YP_003022489.1 KEGG: gbm:Gbem_1521 hypothetical protein YP_003022490.1 KEGG: gbm:Gbem_1520 hypothetical protein YP_003022491.1 KEGG: gbm:Gbem_1519 hypothetical protein YP_003022492.1 PFAM: protein of unknown function DUF485; KEGG: gbm:Gbem_1518 protein of unknown function DUF485 YP_003022493.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: gbm:Gbem_1517 SSS sodium solute transporter superfamily YP_003022494.1 PFAM: protein of unknown function DUF294 nucleotidyltransferase KEGG: gbm:Gbem_1516 protein of unknown function DUF294 nucleotidyltransferase YP_003022495.1 KEGG: gbm:Gbem_1515 hypothetical protein YP_003022496.1 PFAM: Na+/solute symporter; KEGG: gbm:Gbem_1514 Na+/solute symporter YP_003022497.1 PFAM: protein of unknown function DUF294 nucleotidyltransferase KEGG: gbm:Gbem_1513 protein of unknown function DUF294 nucleotidyltransferase YP_003022498.1 PFAM: xylose isomerase; KEGG: gbm:Gbem_1512 xylose isomerase domain protein TIM barrel YP_003022499.1 PFAM: UspA domain protein; KEGG: gbm:Gbem_1511 UspA domain protein YP_003022500.1 PFAM: inositol monophosphatase; KEGG: gbm:Gbem_1510 inositol monophosphatase YP_003022501.1 KEGG: gbm:Gbem_1509 hypothetical protein YP_003022502.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: gbm:Gbem_1508 ammonium transporter YP_003022503.1 PFAM: nitrogen regulatory protein P-II; KEGG: gbm:Gbem_1507 nitrogen regulatory protein P-II YP_003022504.1 KEGG: gbm:Gbem_1506 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_003022505.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1505 multi-sensor hybrid histidine kinase YP_003022506.1 PFAM: glutamine amidotransferase class-I; KEGG: gbm:Gbem_1504 glutamine amidotransferase class-I YP_003022507.1 KEGG: gbm:Gbem_1503 CapA family protein YP_003022508.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_1502 protein of unknown function DUF224 cysteine-rich region domain protein YP_003022509.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit ; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1501 electron transfer flavoprotein subunit alpha YP_003022510.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_1500 electron transfer flavoprotein alpha/beta-subunit YP_003022511.1 TIGRFAM: TonB family protein; KEGG: gbm:Gbem_1499 TonB family protein YP_003022512.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: gbm:Gbem_1498 UTP-glucose-1-phosphate uridylyltransferase YP_003022513.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: gbm:Gbem_1497 tetrahydrofolate dehydrogenase/cyclohydrolase YP_003022514.1 TIGRFAM: FmdB family transcriptional regulator; KEGG: gbm:Gbem_1496 FmdB family transcriptional regulator YP_003022515.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: gbm:Gbem_1495 signal-transduction protein with CBS domains YP_003022516.1 PFAM: protein of unknown function DUF167; KEGG: gbm:Gbem_1494 protein of unknown function DUF167 YP_003022517.1 PFAM: DivIVA family protein; KEGG: gbm:Gbem_1493 DivIVA family protein YP_003022518.1 PFAM: protein of unknown function YGGT; KEGG: gbm:Gbem_1492 protein of unknown function YGGT YP_003022519.1 KEGG: gbm:Gbem_2991 hypothetical protein YP_003022520.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: gur:Gura_3924 filamentation induced by cAMP protein Fic YP_003022521.1 KEGG: gme:Gmet_3064 hypothetical protein YP_003022522.1 KEGG: gme:Gmet_3063 hypothetical protein YP_003022523.1 KEGG: gme:Gmet_3062 hypothetical protein YP_003022524.1 KEGG: gme:Gmet_3061 hypothetical protein YP_003022526.1 KEGG: rpt:Rpal_3822 hypothetical protein YP_003022527.1 KEGG: rpt:Rpal_1103 cytochrome C class I protein YP_003022529.1 KEGG: gme:Gmet_2742 hypothetical protein YP_003022530.1 KEGG: mpo:Mpop_2534 hypothetical protein YP_003022531.1 KEGG: mpo:Mpop_2535 hypothetical protein YP_003022532.1 PFAM: vitamin K epoxide reductase; KEGG: tbd:Tbd_1471 hypothetical protein YP_003022533.1 PFAM: glycoside hydrolase 15-related; protein of unknown function DUF547; KEGG: gbm:Gbem_0290 glycoside hydrolase 15-related YP_003022534.1 PFAM: protein of unknown function DUF1622; vitamin K epoxide reductase; KEGG: gbm:Gbem_2005 vitamin K epoxide reductase YP_003022535.1 PFAM: transport-associated; KEGG: gbm:Gbem_3235 transport-associated YP_003022536.1 KEGG: cbd:CBUD_0801 dTDP-glucose 4,6-dehydratase YP_003022537.1 PFAM: vitamin K epoxide reductase; KEGG: eba:ebA4552 hypothetical protein YP_003022539.1 KEGG: gbm:Gbem_1491 ABC-type phosphate transporter periplasmic component-like protein YP_003022540.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: gbm:Gbem_1487 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_003022541.1 KEGG: gbm:Gbem_1486 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein YP_003022542.1 KEGG: gbm:Gbem_1488 hypothetical protein YP_003022544.1 KEGG: gbm:Gbem_1484 hypothetical protein YP_003022545.1 PFAM: peptidoglycan-binding protein; KEGG: hch:HCH_03670 EF hand domain-containing protein YP_003022546.1 KEGG: pin:Ping_2137 hypothetical protein YP_003022547.1 KEGG: pin:Ping_2136 hypothetical protein YP_003022549.1 SMART: cell wall hydrolase/autolysin; KEGG: hypothetical protein YP_003022550.1 KEGG: dal:Dalk_1959 membrane-bound metal-dependent hydrolase YP_003022551.1 KEGG: gme:Gmet_2657 hypothetical protein YP_003022552.1 PFAM: PDZ/DHR/GLGF domain protein; ankyrin; SMART: PDZ/DHR/GLGF domain protein; ankyrin; KEGG: gme:Gmet_2658 PDZ/DHR/GLGF:ankyrin YP_003022553.1 PFAM: hypothetical protein; KEGG: gme:Gmet_2659 hypothetical protein YP_003022554.1 KEGG: gme:Gmet_2660 hypothetical protein YP_003022556.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; oxidoreductase domain; KEGG: gbm:Gbem_1065 oxidoreductase domain protein YP_003022557.1 KEGG: gbm:Gbem_1483 hypothetical protein YP_003022558.1 TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: gsu:GSU2759 potassium efflux system protein YP_003022559.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: gsu:GSU2760 NAD(P)H oxidoreductase YP_003022560.1 PFAM: restriction endonuclease; TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: hpj:jhp0345 hypothetical protein YP_003022562.1 KEGG: atc:AGR_pTi_102 hypothetical protein YP_003022563.1 KEGG: glo:Glov_1130 transcriptional regulator, XRE family YP_003022564.1 PFAM: GP30.3 family protein; KEGG: gbm:Gbem_1485 GP30.3 family protein YP_003022565.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1482 methyl-accepting chemotaxis sensory transducer YP_003022566.1 PFAM: protein of unknown function DUF302; KEGG: ppd:Ppro_3686 hypothetical protein YP_003022567.1 PFAM: transglycosylase; KEGG: gbm:Gbem_1481 transglycosylase YP_003022568.1 PFAM: RES domain protein; KEGG: gur:Gura_0589 hypothetical protein YP_003022569.1 KEGG: gur:Gura_0590 hypothetical protein YP_003022570.1 KEGG: gme:Gmet_1218 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_003022572.1 KEGG: gbm:Gbem_1473 hypothetical protein YP_003022573.1 KEGG: gbm:Gbem_1472 hypothetical protein YP_003022574.1 TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: gbm:Gbem_1471 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003022575.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_1470 electron transfer flavoprotein subunit alpha YP_003022576.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_1469 electron transfer flavoprotein alpha/beta-subunit YP_003022577.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_1468 protein of unknown function DUF224 cysteine-rich region domain protein YP_003022578.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit ; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1467 electron transfer flavoprotein subunit alpha YP_003022579.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_1466 electron transfer flavoprotein alpha/beta-subunit YP_003022580.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding protein; KEGG: gbm:Gbem_1465 succinyl-CoA synthetase, subunit alpha YP_003022581.1 KEGG: gbm:Gbem_1464 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_003022582.1 KEGG: gbm:Gbem_0501 transcriptional repressor, LexA family YP_003022583.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1463 protein of unknown function DUF224 cysteine-rich region domain protein YP_003022584.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1462 enoyl-CoA hydratase/isomerase YP_003022585.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: gbm:Gbem_1461 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_003022586.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; KEGG: gbm:Gbem_1460 acetyl-CoA acetyltransferase YP_003022587.1 PFAM: amidohydrolase 2; KEGG: gbm:Gbem_1458 amidohydrolase 2 YP_003022588.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1457 enoyl-CoA hydratase/isomerase YP_003022589.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: gbm:Gbem_1456 methyltransferase type 11 YP_003022590.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_003022591.1 catalyzes the formation of pyruvate from oxaloacetate YP_003022592.1 PFAM: carboxyl transferase; KEGG: gbm:Gbem_1453 carboxyl transferase YP_003022593.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: gbm:Gbem_1452 acyl-CoA dehydrogenase domain protein YP_003022594.1 PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1451 ferredoxin YP_003022595.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1450 respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_003022596.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: gbm:Gbem_1449 NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_003022597.1 Contains selenocysteine; PFAM: methyl-viologen-reducing hydrogenase subunit delta; KEGG: gbm:Gbem_1448 methyl-viologen-reducing hydrogenase subunit delta YP_003022598.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1447 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003022599.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gbm:Gbem_1446 protein of unknown function DUF224 cysteine-rich region domain protein YP_003022600.1 KEGG: gbm:Gbem_1445 4Fe-4S ferredoxin iron-sulfur binding protein YP_003022601.1 KEGG: gbm:Gbem_1444 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_003022602.1 TIGRFAM: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; PFAM: enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1443 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase YP_003022603.1 PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_1442 thioesterase superfamily protein YP_003022604.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_1441 GCN5-related N-acetyltransferase YP_003022605.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_1440 transcriptional regulator, BadM/Rrf2 family YP_003022606.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: gbm:Gbem_1439 acetyl-CoA hydrolase/transferase YP_003022607.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; hypothetical protein; SMART: AAA ATPase; PAS domain containing protein; KEGG: gbm:Gbem_1438 PAS modulated sigma54 specific transcriptional regulator, fis family YP_003022608.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: gbm:Gbem_1437 formate dehydrogenase family accessory protein FdhD YP_003022609.1 KEGG: gbm:Gbem_1436 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: radical SAM domain protein; molybdenum cofactor synthesis protein; SMART: Elongator protein 3/MiaB/NifB YP_003022610.1 PFAM: amidohydrolase 2; KEGG: gbm:Gbem_1435 amidohydrolase 2 YP_003022611.1 KEGG: gbm:Gbem_1434 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_003022612.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_1433 short-chain dehydrogenase/reductase SDR YP_003022613.1 TIGRFAM: cyclohexa-1,5-dienecarbonyl-CoA hydratase; PFAM: enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1432 cyclohexa-1,5-dienecarbonyl-CoA hydratase YP_003022614.1 TIGRFAM: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: gbm:Gbem_1431 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase YP_003022615.1 PFAM: acetyl-CoA hydrolase/transferase; GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_1430 acetyl-CoA hydrolase/transferase YP_003022616.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: gme:Gmet_2143 benzoate-CoA ligase family YP_003022617.1 KEGG: gbm:Gbem_1428 hypothetical protein YP_003022618.1 KEGG: gbm:Gbem_1427 hypothetical protein YP_003022619.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_1426 Fis family transcriptional regulator YP_003022620.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_1425 integral membrane sensor signal transduction histidine kinase YP_003022621.1 PFAM: protein of unknown function DUF81; KEGG: gbm:Gbem_2150 protein of unknown function DUF81 YP_003022622.1 TIGRFAM: molybdenum hydroxylase accessory protein, YgfJ family; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: geo:Geob_0102 molybdenum hydroxylase accessory protein, YgfJ family YP_003022623.1 KEGG: gme:Gmet_2139 hypothetical protein YP_003022624.1 TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: geo:Geob_0104 selenium-dependent molybdenum hydroxylase system protein, YqeB family YP_003022625.1 PFAM: protein of unknown function DUF182; KEGG: gme:Gmet_2137 hypothetical protein YP_003022626.1 TIGRFAM: 4-hydroxybenzoyl-CoA reductase, alpha subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: gme:Gmet_2136 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_003022627.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: geo:Geob_0107 (2Fe-2S)-binding domain protein YP_003022628.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: gme:Gmet_2134 molybdopterin dehydrogenase, FAD-binding:CO dehydrogenase flavoprotein-like YP_003022629.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gme:Gmet_2133 MarR family transcriptional regulator YP_003022630.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: gme:Gmet_2132 twin-arginine translocation protein TatA/E YP_003022631.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: gme:Gmet_2098 phosphate butyryltransferase YP_003022632.1 PFAM: thiamineS protein; KEGG: geo:Geob_0270 thiamineS protein YP_003022633.1 KEGG: geo:Geob_0113 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_003022634.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: geo:Geob_0114 short-chain dehydrogenase/reductase SDR YP_003022635.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_003022636.1 KEGG: gme:Gmet_2127 phenol degradation-like protein YP_003022637.1 PFAM: FAD linked oxidase; KEGG: geo:Geob_0118 FAD linked oxidase YP_003022638.1 PFAM: FAD linked oxidase; KEGG: geo:Geob_0119 FAD linked oxidase YP_003022639.1 KEGG: geo:Geob_0120 twin-arginine translocation pathway signal YP_003022640.1 KEGG: geo:Geob_0121 hypothetical protein YP_003022641.1 PFAM: cytochrome C class I; KEGG: geo:Geob_0122 cytochrome c class I YP_003022642.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: gme:Gmet_2121 twin-arginine translocation pathway signal YP_003022643.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: gme:Gmet_2118 FAD dependent oxidoreductase YP_003022644.1 KEGG: gme:Gmet_2117 hypothetical protein YP_003022645.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; activator of aromatic catabolism; SMART: ATPase AAA; KEGG: gme:Gmet_2114 Fis family transcriptional regulator YP_003022646.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: gbm:Gbem_1424 SSS sodium solute transporter superfamily YP_003022647.1 PFAM: protein of unknown function DUF485; KEGG: gbm:Gbem_1423 protein of unknown function DUF485 YP_003022648.1 KEGG: gbm:Gbem_1422 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent YP_003022649.1 PFAM: amino acid-binding ACT domain protein; KEGG: gbm:Gbem_1421 hypothetical protein YP_003022650.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: gbm:Gbem_1420 pyruvate ferredoxin/flavodoxin oxidoreductase YP_003022651.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1419 indolepyruvate ferredoxin oxidoreductase, subunit alpha YP_003022652.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: gbm:Gbem_1418 acetyl-CoA hydrolase/transferase YP_003022653.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: gbm:Gbem_1417 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_003022654.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1416 enoyl-CoA hydratase/isomerase YP_003022655.1 PFAM: thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: gbm:Gbem_1415 thiolase YP_003022656.1 PFAM: CoA-binding protein; KEGG: gbm:Gbem_1414 CoA-binding protein YP_003022657.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gbm:Gbem_1413 2-hydroxyglutaryl-CoA dehydratase D-component YP_003022658.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gbm:Gbem_1412 CoA-substrate-specific enzyme activase YP_003022659.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; PAS fold-4 domain protein; ATPase AAA; SMART: AAA ATPase; GAF domain protein; KEGG: gbm:Gbem_1411 transcriptional regulator, NifA subfamily, fis family YP_003022660.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_1410 radical SAM protein YP_003022661.1 KEGG: gbm:Gbem_1409 hypothetical protein YP_003022662.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA; SMART: ATPase AAA; KEGG: gbm:Gbem_1408 ATPase AAA YP_003022663.1 PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: gbm:Gbem_1407 transcriptional regulator, IclR family YP_003022664.1 KEGG: gur:Gura_0562 hypothetical protein YP_003022665.1 KEGG: gur:Gura_0563 hypothetical protein YP_003022667.1 KEGG: glo:Glov_1222 transcriptional regulator; TIGRFAM: addiction module antidote protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003022668.1 PFAM: protein of unknown function DUF1568; KEGG: gbm:Gbem_1406 protein of unknown function DUF1568 YP_003022669.1 KEGG: gbm:Gbem_1404 hypothetical protein YP_003022670.1 TIGRFAM: methyltransferase; PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: gbm:Gbem_1403 methyltransferase YP_003022671.1 TIGRFAM: methyltransferase; PFAM: methyltransferase ; methyltransferase type 11; methyltransferase type 12; KEGG: gbm:Gbem_1402 methyltransferase YP_003022672.1 KEGG: gbm:Gbem_1401 hypothetical protein YP_003022673.1 KEGG: gbm:Gbem_1400 membrane protein-like protein YP_003022674.1 PFAM: integrase; KEGG: gur:Gura_2875 integrase catalytic subunit YP_003022675.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gur:Gura_2874 IstB ATP binding domain-containing protein YP_003022676.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2935 response regulator receiver protein YP_003022677.1 PFAM: RelA/SpoT domain protein; KEGG: gbm:Gbem_1399 RelA/SpoT domain protein YP_003022678.1 KEGG: gbm:Gbem_1393 hypothetical protein YP_003022679.1 KEGG: gbm:Gbem_1392 hypothetical protein YP_003022680.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_1391 cold-shock DNA-binding domain protein YP_003022681.1 KEGG: gbm:Gbem_1390 hypothetical protein YP_003022682.1 PFAM: AzlC family protein; KEGG: gbm:Gbem_1389 AzlC family protein YP_003022683.1 PFAM: branched-chain amino acid transport; KEGG: gbm:Gbem_1388 branched-chain amino acid transport YP_003022684.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_1387 hypothetical protein YP_003022685.1 KEGG: gbm:Gbem_1386 hypothetical protein YP_003022686.1 KEGG: gbm:Gbem_1385 hypothetical protein YP_003022687.1 KEGG: gbm:Gbem_1383 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003022688.1 PFAM: CheD family protein; KEGG: gbm:Gbem_1382 chemotaxis protein CheDs YP_003022689.1 KEGG: gur:Gura_2940 hypothetical protein YP_003022690.1 KEGG: gbm:Gbem_1381 hypothetical protein YP_003022691.1 TIGRFAM: transaldolase; PFAM: transaldolase; KEGG: gbm:Gbem_1380 transaldolase YP_003022692.1 TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: gbm:Gbem_1379 transketolase YP_003022693.1 PFAM: aldo/keto reductase; KEGG: gbm:Gbem_1378 aldo/keto reductase YP_003022694.1 PFAM: OmpA/MotB domain protein; OmpF family protein; KEGG: gbm:Gbem_1376 OmpA/MotB domain protein YP_003022695.1 SMART: rhodanese; KEGG: gbm:Gbem_1375 rhodanese domain protein YP_003022696.1 KEGG: gbm:Gbem_1374 hypothetical protein YP_003022697.1 PFAM: anti-sigma-28 factor FlgM family protein; KEGG: gbm:Gbem_1373 anti-sigma-28 factor, FlgM YP_003022698.1 KEGG: gbm:Gbem_1372 hypothetical protein YP_003022699.1 KEGG: gbm:Gbem_1371 hypothetical protein YP_003022700.1 KEGG: gbm:Gbem_1370 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein YP_003022701.1 KEGG: gbm:Gbem_1369 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003022702.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: gbm:Gbem_1368 nickel-dependent hydrogenase large subunit YP_003022703.1 PFAM: cytochrome B561; KEGG: gbm:Gbem_1367 cytochrome b561 YP_003022704.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: gbm:Gbem_1366 ErfK/YbiS/YcfS/YnhG family protein YP_003022705.1 KEGG: gme:Gmet_2525 hypothetical protein YP_003022706.1 KEGG: gbm:Gbem_1365 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003022707.1 KEGG: gbm:Gbem_1364 hypothetical protein YP_003022708.1 KEGG: gbm:Gbem_1363 hypothetical protein YP_003022709.1 KEGG: gbm:Gbem_1362 hypothetical protein YP_003022710.1 KEGG: gbm:Gbem_1361 hypothetical protein YP_003022711.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_1360 radical SAM protein YP_003022712.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1359 protein of unknown function DUF224 cysteine-rich region domain protein YP_003022714.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit ; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1358 electron transfer flavoprotein subunit alpha YP_003022715.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_1357 electron transfer flavoprotein alpha/beta-subunit YP_003022716.1 KEGG: gbm:Gbem_1356 hypothetical protein YP_003022717.1 PFAM: MOSC domain containing protein; KEGG: gbm:Gbem_1355 MOSC domain containing protein YP_003022718.1 KEGG: gbm:Gbem_1354 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003022719.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gbm:Gbem_1353 iron-containing alcohol dehydrogenase YP_003022720.1 KEGG: gbm:Gbem_1352 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_003022721.1 PFAM: thiamineS protein; KEGG: gbm:Gbem_1351 thiamineS protein YP_003022722.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gbm:Gbem_1350 UBA/ThiF-type NAD/FAD binding protein YP_003022723.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: gbm:Gbem_1349 molybdenum cofactor synthesis domain protein YP_003022724.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: gbm:Gbem_1348 molybdenum cofactor biosynthesis protein C YP_003022725.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_003022726.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; regulatory protein ArsR; methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: gbm:Gbem_1345 transcriptional regulator, ArsR family YP_003022727.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: gbm:Gbem_1344 2-nitropropane dioxygenase NPD YP_003022728.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_1343 integral membrane sensor signal transduction histidine kinase YP_003022729.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1342 transcriptional regulator YP_003022730.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_003022731.1 KEGG: gbm:Gbem_1340 hypothetical protein YP_003022732.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: gbm:Gbem_1339 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_003022733.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: gbm:Gbem_1338 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003022734.1 PFAM: UvrD/REP helicase; KEGG: gbm:Gbem_1337 UvrD/REP helicase YP_003022735.1 KEGG: gbm:Gbem_1336 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; DNA-binding protein YP_003022736.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_1334 electron transfer flavoprotein subunit alpha YP_003022737.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_1333 electron transfer flavoprotein alpha/beta-subunit YP_003022738.1 KEGG: gbm:Gbem_1332 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003022739.1 KEGG: gbm:Gbem_1331 hypothetical protein YP_003022740.1 PFAM: pseudouridine synthase; KEGG: gbm:Gbem_1330 pseudouridine synthase YP_003022741.1 PFAM: transcription regulator MerR DNA binding; MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: gbm:Gbem_1329 MerR family transcriptional regulator YP_003022742.1 KEGG: gbm:Gbem_1328 hypothetical protein YP_003022743.1 KEGG: gbm:Gbem_1327 protein-disulfide isomerase-like protein YP_003022744.1 PFAM: ROK family protein; KEGG: gbm:Gbem_1326 ROK family protein YP_003022745.1 PFAM: histidine triad (HIT) protein; KEGG: gbm:Gbem_1325 histidine triad (HIT) protein YP_003022746.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_003022747.1 KEGG: gbm:Gbem_1323 hypothetical protein YP_003022748.1 SMART: hypothetical protein; KEGG: gbm:Gbem_1322 hypothetical protein YP_003022749.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: gbm:Gbem_1321 transglutaminase domain protein YP_003022750.1 PFAM: protein of unknown function DUF58; KEGG: gbm:Gbem_1320 protein of unknown function DUF58 YP_003022751.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; SMART: AAA ATPase; KEGG: gbm:Gbem_1319 ATPase associated with various cellular activities AAA_3 YP_003022752.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_1318 radical SAM protein YP_003022753.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: gbm:Gbem_1317 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_003022754.1 KEGG: gbm:Gbem_1316 hypothetical protein YP_003022755.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: gbm:Gbem_1315 SUA5/YciO/YrdC/YwlC family protein YP_003022756.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: gbm:Gbem_1314 GreA/GreB family elongation factor YP_003022757.1 PFAM: transposase IS4 family protein; KEGG: ppd:Ppro_1770 transposase, IS4 family protein YP_003022758.1 KEGG: gbm:Gbem_1313 actin-like protein ATPase involved in cell morphogenesis-like protein YP_003022759.1 KEGG: gbm:Gbem_1312 hypothetical protein YP_003022760.1 PFAM: peptidase M29 aminopeptidase II; KEGG: gbm:Gbem_1311 peptidase M29 aminopeptidase II YP_003022761.1 catalyzes the formation of dUMP from dUTP YP_003022762.1 PFAM: peptidase M16 domain protein; KEGG: gbm:Gbem_1309 peptidase M16 domain protein YP_003022763.1 KEGG: gbm:Gbem_1308 3' exoribonuclease; PFAM: 3' exoribonuclease; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003022764.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_003022765.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: gbm:Gbem_1306 tRNA pseudouridine synthase B YP_003022766.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: gbm:Gbem_1305 phosphoesterase RecJ domain protein YP_003022767.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: gbm:Gbem_1304 ribosome-binding factor A YP_003022768.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_003022769.1 PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448 YP_003022770.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_003022771.1 PFAM: protein of unknown function DUF150; KEGG: gbm:Gbem_1299 protein of unknown function DUF150 YP_003022772.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_003022773.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: gbm:Gbem_1297 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_003022774.1 PFAM: helix-turn-helix Fis-type; response regulator receiver; KEGG: gbm:Gbem_1296 two component transcriptional regulator, fis family YP_003022775.1 TIGRFAM: oligoendopeptidase; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase F; KEGG: gbm:Gbem_1295 oligoendopeptidase, PepF/M3 family YP_003022776.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_003022777.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: gbm:Gbem_1293 formate dehydrogenase family accessory protein FdhD YP_003022778.1 KEGG: gbm:Gbem_1292 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase YP_003022779.1 KEGG: gbm:Gbem_1291 hypothetical protein YP_003022780.1 KEGG: gbm:Gbem_1290 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003022781.1 PFAM: peptidase M23; KEGG: gbm:Gbem_1289 peptidase M23B YP_003022782.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_1288 protein of unknown function DUF214 YP_003022783.1 KEGG: gbm:Gbem_1287 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA YP_003022784.1 PFAM: type II secretion system protein G; KEGG: gbm:Gbem_1286 type II secretion system protein G YP_003022785.1 KEGG: gbm:Gbem_1285 hypothetical protein YP_003022786.1 PFAM: type II and III secretion system protein; TPR repeat-containing protein; cellulosome anchoring protein cohesin region; NolW domain protein; hypothetical protein; SMART: hypothetical protein; KEGG: gbm:Gbem_1284 type II and III secretion system protein YP_003022787.1 KEGG: gbm:Gbem_1283 hypothetical protein YP_003022788.1 KEGG: gbm:Gbem_1282 hypothetical protein YP_003022789.1 PFAM: fimbrial assembly family protein; KEGG: gbm:Gbem_1281 fimbrial assembly family protein YP_003022790.1 KEGG: gbm:Gbem_1280 Tfp pilus assembly protein ATPase PilM-like protein YP_003022791.1 PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: gbm:Gbem_1279 type II secretion system protein E YP_003022792.1 PFAM: type II secretion system protein; KEGG: gbm:Gbem_1278 type II secretion system protein YP_003022793.1 KEGG: gbm:Gbem_1277 hypothetical protein YP_003022794.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1276 glycosyl transferase family 2 YP_003022795.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: gbm:Gbem_1275 histone family protein DNA-binding protein YP_003022796.1 KEGG: gbm:Gbem_1274 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; ATPase AAA YP_003022797.1 binds and unfolds substrates as part of the ClpXP protease YP_003022798.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_003022799.1 TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase; KEGG: gbm:Gbem_1271 trigger factor YP_003022800.1 TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: gbm:Gbem_1270 cytochrome d ubiquinol oxidase subunit II YP_003022801.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: gbm:Gbem_1269 cytochrome bd ubiquinol oxidase subunit I YP_003022802.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_1268 transcriptional regulator, BadM/Rrf2 family YP_003022803.1 KEGG: gbm:Gbem_1267 hypothetical protein YP_003022804.1 KEGG: gbm:Gbem_1266 hypothetical protein YP_003022805.1 KEGG: gbm:Gbem_1265 2-isopropylmalate synthase/homocitrate synthase family protein; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; SNP /replace=A YP_003022806.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_003022807.1 PFAM: protein of unknown function UPF0079; KEGG: gbm:Gbem_1263 protein of unknown function UPF0079 YP_003022808.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: gbm:Gbem_1262 hypothetical protein YP_003022809.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: gbm:Gbem_1261 carbohydrate kinase, YjeF related protein YP_003022810.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_003022811.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_1259 tetratricopeptide TPR_2 repeat protein YP_003022812.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_003022813.1 PFAM: polyprenyl synthetase; KEGG: gbm:Gbem_1257 polyprenyl synthetase YP_003022814.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_003022815.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_003022816.1 KEGG: gbm:Gbem_1254 ATPase involved in chromosome partitioning-like protein YP_003022817.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: gbm:Gbem_1253 protein of unknown function DUF610 YibQ YP_003022818.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_1252 hemerythrin-like metal-binding protein YP_003022819.1 PFAM: protein of unknown function DUF542 ScdA domain protein; hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_1251 hemerythrin HHE cation binding domain protein YP_003022820.1 KEGG: gbm:Gbem_1249 cytochrome C class I YP_003022821.1 PFAM: cytochrome C oxidase subunit I; KEGG: gbm:Gbem_1248 cytochrome C oxidase subunit I YP_003022822.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: gbm:Gbem_1242 large conductance mechanosensitive channel protein YP_003022823.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: gbm:Gbem_1241 MIP family channel protein YP_003022824.1 PFAM: OmpA/MotB domain protein; OmpF family protein; KEGG: gbm:Gbem_1240 OmpA/MotB domain protein YP_003022825.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_003022826.1 KEGG: gbm:Gbem_1238 hypothetical protein YP_003022827.1 PFAM: cytochrome C oxidase subunit I; KEGG: gbm:Gbem_1237 cytochrome C oxidase subunit I YP_003022828.1 TIGRFAM: cytochrome C oxidase cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_1236 cytochrome C oxidase cbb3-type, subunit II YP_003022829.1 KEGG: gbm:Gbem_1235 hypothetical protein YP_003022830.1 PFAM: cytochrome C class I; KEGG: gbm:Gbem_1234 cytochrome c class I YP_003022831.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1233 4Fe-4S ferredoxin iron-sulfur binding protein YP_003022832.1 PFAM: FixH family protein; KEGG: gbm:Gbem_1232 hypothetical protein YP_003022833.1 TIGRFAM: ATPase P; ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: gbm:Gbem_1231 ATPase P YP_003022834.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: gbm:Gbem_1230 cytochrome oxidase maturation protein, cbb3-type YP_003022835.1 KEGG: gbm:Gbem_1229 hypothetical protein YP_003022836.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1226 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003022837.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: gbm:Gbem_1225 lysine exporter protein (LysE/YggA) YP_003022838.1 PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: gbm:Gbem_1223 formylmethanofuran dehydrogenase subunit E-like protein YP_003022839.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: gbm:Gbem_1222 aspartate racemase YP_003022840.1 KEGG: gbm:Gbem_1221 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: ATPase AAA; Helix-hairpin-helix DNA-binding class 1 YP_003022841.1 KEGG: gbm:Gbem_1218 hypothetical protein YP_003022842.1 PFAM: peptidoglycan-binding protein; SMART: AAA ATPase; KEGG: gbm:Gbem_1217 peptidoglycan-binding protein YP_003022843.1 PFAM: SCP-like extracellular; KEGG: gbm:Gbem_1216 SCP-like extracellular YP_003022844.1 KEGG: gbm:Gbem_1215 hypothetical protein YP_003022845.1 KEGG: gbm:Gbem_1214 hypothetical protein YP_003022846.1 PFAM: protein of unknown function DUF107; KEGG: gbm:Gbem_1213 protein of unknown function DUF107 YP_003022847.1 PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; KEGG: gbm:Gbem_1212 metal dependent phosphohydrolase YP_003022848.1 KEGG: gbm:Gbem_1211 hypothetical protein YP_003022849.1 KEGG: geo:Geob_0300 NHL repeat containing protein YP_003022850.1 KEGG: gbm:Gbem_1209 hypothetical protein YP_003022851.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_1208 MarR family transcriptional regulator YP_003022852.1 PFAM: YceI family protein; KEGG: gbm:Gbem_1207 YceI family protein YP_003022853.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: geo:Geob_1155 superoxide dismutase copper/zinc binding YP_003022854.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_4009 hemerythrin-like metal-binding protein YP_003022855.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_003022856.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_003022857.1 KEGG: gbm:Gbem_1203 hypothetical protein YP_003022858.1 KEGG: gbm:Gbem_1202 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_003022859.1 Catalyzes the rate-limiting step in dNTP synthesis YP_003022860.1 PFAM: pentapeptide repeat protein; KEGG: scl:sce3623 hypothetical protein YP_003022861.1 PFAM: transposase IS3/IS911 family protein; KEGG: glo:Glov_3396 transposase IS3/IS911 family protein YP_003022862.1 PFAM: integrase; KEGG: glo:Glov_3397 integrase catalytic region YP_003022863.1 KEGG: plu:plu2710 hypothetical protein YP_003022864.1 PFAM: restriction endonuclease XhoI; KEGG: plu:plu2709 hypothetical protein YP_003022866.1 PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: gur:Gura_1192 beta-Ig-H3/fasciclin YP_003022867.1 KEGG: gbm:Gbem_1198 hypothetical protein YP_003022868.1 KEGG: gbm:Gbem_1196 hypothetical protein YP_003022869.1 PFAM: major royal jelly protein; KEGG: gbm:Gbem_1195 hypothetical protein YP_003022870.1 KEGG: gbm:Gbem_1194 hypothetical protein YP_003022871.1 PFAM: aldo/keto reductase; KEGG: gbm:Gbem_1193 aldo/keto reductase YP_003022872.1 PFAM: rubrerythrin; KEGG: gbm:Gbem_1188 rubrerythrin YP_003022873.1 KEGG: gbm:Gbem_1187 hypothetical protein YP_003022874.1 KEGG: gbm:Gbem_1186 4Fe-4S ferredoxin iron-sulfur binding protein YP_003022875.1 KEGG: gbm:Gbem_1185 hypothetical protein YP_003022876.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1184 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003022877.1 KEGG: gbm:Gbem_1183 CO dehydrogenase/acetyl-CoA synthase subunit gamma (corrinoid Fe-S protein)-like protein YP_003022879.1 KEGG: gbm:Gbem_1182 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta YP_003022880.1 KEGG: gbm:Gbem_1181 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_003022881.1 KEGG: gbm:Gbem_1180 hypothetical protein YP_003022882.1 KEGG: ppd:Ppro_2611 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003022883.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: gur:Gura_0781 Sel1 domain-containing protein YP_003022884.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gur:Gura_0925 two component, sigma-54 specific, fis family transcriptional regulator YP_003022886.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ppd:Ppro_1416 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003022887.1 KEGG: reh:H16_B2395 hypothetical membrane associated protein YP_003022888.1 PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: gsu:GSU3233 cytochrome C family protein YP_003022889.1 KEGG: gsu:GSU3232 cytochrome C family protein YP_003022890.1 KEGG: gsu:GSU3230 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; hypothetical protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein YP_003022891.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gsu:GSU3229 LuxR family DNA-binding response regulator YP_003022892.1 PFAM: PKD domain containing protein; KEGG: gsu:GSU3228 cytochrome C family protein YP_003022893.1 KEGG: gsu:GSU3227 hypothetical protein YP_003022894.1 KEGG: gsu:GSU3226 cytochrome C family protein YP_003022895.1 PFAM: NHL repeat containing protein; KEGG: gur:Gura_2755 NHL repeat-containing protein YP_003022896.1 KEGG: gur:Gura_2756 hypothetical protein YP_003022897.1 TIGRFAM: cytochrome C family protein; KEGG: gsu:GSU3223 cytochrome C family protein YP_003022898.1 PFAM: NHL repeat containing protein; KEGG: gsu:GSU3222 NHL repeat-containing protein YP_003022899.1 KEGG: gur:Gura_2749 hypothetical protein YP_003022900.1 TIGRFAM: cytochrome C family protein; KEGG: gur:Gura_2759 cytochrome C family protein YP_003022901.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gsu:GSU2429 peptidyl-prolyl cis-trans isomerase domain-containing protein YP_003022902.1 KEGG: gbm:Gbem_1179 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein YP_003022903.1 PFAM: TonB-dependent receptor plug; KEGG: gbm:Gbem_1178 TonB-dependent receptor plug YP_003022904.1 KEGG: gbm:Gbem_1177 ABC-type uncharacterized transport system periplasmic component-like protein YP_003022905.1 KEGG: gbm:Gbem_1176 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; shikimate/quinate 5-dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003022906.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: gbm:Gbem_1174 alcohol dehydrogenase GroES domain protein YP_003022907.1 PFAM: K potassium transporter; KEGG: gbm:Gbem_1173 K potassium transporter YP_003022908.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1172 transcriptional regulator YP_003022909.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_1171 integral membrane sensor signal transduction histidine kinase YP_003022910.1 KEGG: gbm:Gbem_1170 hypothetical protein YP_003022911.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_003022912.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1167 methyl-accepting chemotaxis sensory transducer YP_003022913.1 KEGG: ppd:Ppro_1080 GCN5-related N-acetyltransferase YP_003022914.1 TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: ppd:Ppro_3270 trehalose-phosphatase YP_003022915.1 PFAM: glycosyl transferase family 20; KEGG: ppd:Ppro_3271 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_003022916.1 PFAM: dihydrodipicolinate reductase; KEGG: ppd:Ppro_3262 dihydrodipicolinate reductase YP_003022917.1 PFAM: conserved hypothetical protein; KEGG: gsu:GSU2346 hypothetical protein YP_003022918.1 PFAM: glycoside hydrolase 15-related; KEGG: glo:Glov_1816 glycoside hydrolase 15-related YP_003022919.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ppd:Ppro_3272 MarR family transcriptional regulator YP_003022920.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: dar:Daro_0688 Na+/H+ antiporter NhaA YP_003022922.1 KEGG: gbm:Gbem_1150 hypothetical protein YP_003022923.1 KEGG: gbm:Gbem_1149 hypothetical protein YP_003022924.1 PFAM: carbonic anhydrase; KEGG: gbm:Gbem_1148 carbonic anhydrase YP_003022925.1 PFAM: protein of unknown function DUF309; KEGG: gbm:Gbem_1147 protein of unknown function DUF309 YP_003022926.1 KEGG: gbm:Gbem_1146 hypothetical protein YP_003022927.1 PFAM: major facilitator superfamily MFS_1; KEGG: geo:Geob_2855 major facilitator superfamily MFS_1 YP_003022928.1 KEGG: gbm:Gbem_1144 hypothetical protein YP_003022929.1 KEGG: gbm:Gbem_1143 hypothetical protein YP_003022930.1 KEGG: gbm:Gbem_1142 lipoprotein YP_003022931.1 KEGG: gbm:Gbem_1141 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003022932.1 KEGG: gbm:Gbem_1140 hypothetical protein YP_003022933.1 KEGG: gbm:Gbem_1138 hypothetical protein YP_003022934.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_1136 GDP-mannose 4,6-dehydratase YP_003022935.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: gbm:Gbem_1135 NAD-dependent epimerase/dehydratase YP_003022936.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gbm:Gbem_1134 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III YP_003022937.1 KEGG: gsu:GSU3214 cytochrome C family protein YP_003022938.1 KEGG: gbm:Gbem_1137 hypothetical protein YP_003022939.1 KEGG: gur:Gura_3284 hypothetical protein YP_003022940.1 KEGG: gbm:Gbem_1137 hypothetical protein YP_003022941.1 KEGG: gsu:GSU2737 polyheme membrane-associated cytochrome c YP_003022942.1 KEGG: gsu:GSU3221 cytochrome C family protein YP_003022943.1 TIGRFAM: cytochrome C family protein; KEGG: gur:Gura_2754 hypothetical protein YP_003022944.1 PFAM: NHL repeat containing protein; KEGG: gur:Gura_2755 NHL repeat-containing protein YP_003022945.1 KEGG: gur:Gura_2756 hypothetical protein YP_003022946.1 TIGRFAM: cytochrome C family protein; KEGG: gur:Gura_2757 cytochrome C family protein YP_003022947.1 PFAM: NHL repeat containing protein; KEGG: gur:Gura_2758 NHL repeat-containing protein YP_003022948.1 TIGRFAM: cytochrome C family protein; KEGG: gur:Gura_2759 cytochrome C family protein YP_003022949.1 PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: gme:Gmet_0342 thrombospondin type 3 repeat-containing OmpA/MotB protein YP_003022950.1 KEGG: gbm:Gbem_1097 hypothetical protein YP_003022951.1 KEGG: gbm:Gbem_1096 hypothetical protein YP_003022952.1 PFAM: Heavy metal transport/detoxification protein; KEGG: gbm:Gbem_1095 heavy metal transport/detoxification protein YP_003022953.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_1094 integral membrane sensor signal transduction histidine kinase YP_003022954.1 KEGG: gbm:Gbem_1093 ferredoxin family protein YP_003022955.1 KEGG: gbm:Gbem_1092 hypothetical protein YP_003022956.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_1091 radical SAM protein YP_003022957.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: gbm:Gbem_1090 alkylhydroperoxidase like protein, AhpD family YP_003022958.1 PFAM: Rieske [2Fe-2S] domain protein; cytochrome b6-f complex Fe-S subunit; KEGG: gsu:GSU1650 cytochrome b/b6 complex, iron-sulfur subunit YP_003022959.1 PFAM: cytochrome b/b6 domain; KEGG: gbm:Gbem_1087 cytochrome b/b6 domain protein YP_003022960.1 KEGG: gbm:Gbem_1086 cytochrome C family protein YP_003022961.1 KEGG: gbm:Gbem_1085 acetyltransferase (isoleucine patch superfamily)-like protein YP_003022962.1 KEGG: gbm:Gbem_1084 hypothetical protein YP_003022963.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_003022964.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gbm:Gbem_1082 AMP-dependent synthetase and ligase YP_003022965.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; KEGG: gbm:Gbem_1081 asparagine synthase (glutamine-hydrolyzing) YP_003022966.1 PFAM: Fibronectin type III domain protein; KEGG: gbm:Gbem_1080 fibronectin type III domain protein YP_003022967.1 KEGG: gbm:Gbem_1079 hypothetical protein YP_003022968.1 PFAM: polysaccharide biosynthesis protein; KEGG: gbm:Gbem_1078 polysaccharide biosynthesis protein YP_003022969.1 PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1077 O-antigen polymerase YP_003022970.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1076 glycosyl transferase family 2 YP_003022971.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1075 glycosyl transferase family 2 YP_003022972.1 KEGG: gbm:Gbem_1074 hypothetical protein YP_003022973.1 PFAM: protein of unknown function DUF354; KEGG: gbm:Gbem_1073 protein of unknown function DUF354 YP_003022974.1 KEGG: gbm:Gbem_1072 ATPase involved in chromosome partitioning-like protein YP_003022975.1 SMART: ATPase AAA; KEGG: gbm:Gbem_1071 ATPase AAA YP_003022976.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: gbm:Gbem_1070 lipopolysaccharide biosynthesis protein YP_003022977.1 PFAM: polysaccharide export protein; KEGG: gbm:Gbem_1069 polysaccharide export protein YP_003022978.1 KEGG: gbm:Gbem_1068 hypothetical protein YP_003022979.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gbm:Gbem_1067 DegT/DnrJ/EryC1/StrS aminotransferase YP_003022980.1 KEGG: gbm:Gbem_1066 transferase hexapeptide repeat YP_003022981.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: gbm:Gbem_1065 oxidoreductase domain protein YP_003022982.1 PFAM: sugar transferase; KEGG: gbm:Gbem_1064 sugar transferase YP_003022983.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: gbm:Gbem_1063 Crp/Fnr family transcriptional regulator YP_003022984.1 PFAM: von Willebrand factor A; KEGG: gbm:Gbem_1062 von Willebrand factor A YP_003022985.1 PFAM: TadE family protein; KEGG: gbm:Gbem_1061 TadE family protein YP_003022986.1 PFAM: TadE family protein; KEGG: gbm:Gbem_1060 TadE family protein YP_003022987.1 KEGG: gbm:Gbem_1059 hypothetical protein YP_003022988.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: gbm:Gbem_1058 Flp pilus assembly protein CpaB YP_003022989.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: gbm:Gbem_1057 type II and III secretion system protein YP_003022990.1 KEGG: gbm:Gbem_1056 response regulator receiver protein YP_003022991.1 PFAM: type II secretion system protein E; KEGG: gbm:Gbem_1055 type II secretion system protein E YP_003022992.1 PFAM: type II secretion system protein; KEGG: gbm:Gbem_1054 type II secretion system protein YP_003022993.1 PFAM: type II secretion system protein; KEGG: gbm:Gbem_1053 type II secretion system protein YP_003022994.1 PFAM: protein of unknown function DUF192; KEGG: gbm:Gbem_1052 protein of unknown function DUF192 YP_003022995.1 KEGG: scl:sce4489 hypothetical protein YP_003022996.1 KEGG: ppd:Ppro_2695 hypothetical protein YP_003022997.1 KEGG: gbm:Gbem_1050 hypothetical protein YP_003022998.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1049 glycosyl transferase family 2 YP_003022999.1 KEGG: gbm:Gbem_1047 hypothetical protein YP_003023000.1 PFAM: CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_1046 chemotaxis protein CheA YP_003023001.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_1045 chemotaxis protein CheW YP_003023002.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1044 methyl-accepting chemotaxis sensory transducer YP_003023003.1 KEGG: gbm:Gbem_1043 chemotaxis protein CheR; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003023004.1 PFAM: CheD family protein; KEGG: gbm:Gbem_1042 chemotaxis protein CheDs YP_003023005.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_003023006.1 KEGG: gbm:Gbem_1040 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein YP_003023007.1 KEGG: gbm:Gbem_1039 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein YP_003023008.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1038 response regulator receiver protein YP_003023009.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_1036 LysR family transcriptional regulator YP_003023010.1 PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_1035 major facilitator superfamily MFS_1 YP_003023011.1 KEGG: gbm:Gbem_1034 hypothetical protein YP_003023012.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_003023013.1 KEGG: gbm:Gbem_1032 hypothetical protein YP_003023014.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_003023015.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_1029 radical SAM protein YP_003023016.1 PFAM: chalcone and stilbene synthase domain protein; FAE1/type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: gbm:Gbem_1028 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein YP_003023017.1 KEGG: gbm:Gbem_1027 peptidase U32 YP_003023018.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: gbm:Gbem_1026 methyltransferase type 11 YP_003023019.1 KEGG: gbm:Gbem_1025 hypothetical protein YP_003023020.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_1024 radical SAM protein YP_003023021.1 PFAM: alpha/beta hydrolase fold; KEGG: gbm:Gbem_1023 alpha/beta hydrolase fold YP_003023022.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: gbm:Gbem_1022 OmpA/MotB domain protein YP_003023023.1 PFAM: pirin; KEGG: gbm:Gbem_1021 pirin domain protein YP_003023024.1 PFAM: ThiJ/PfpI domain protein; KEGG: gbm:Gbem_1020 ThiJ/PfpI domain protein YP_003023025.1 KEGG: gbm:Gbem_1019 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATPase AAA; peptidase S16 lon domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; ATPase AAA YP_003023026.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_1018 response regulator receiver sensor signal transduction histidine kinase YP_003023027.1 KEGG: gbm:Gbem_1017 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; Na+/solute symporter; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003023029.1 KEGG: gbm:Gbem_1015 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003023030.1 amylomaltase; acts to release glucose from maltodextrins YP_003023031.1 KEGG: gbm:Gbem_1013 hypothetical protein YP_003023032.1 KEGG: gbm:Gbem_1012 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003023033.1 KEGG: gbm:Gbem_1011 hypothetical protein YP_003023034.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: gbm:Gbem_1010 import inner membrane translocase subunit Tim44 YP_003023035.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: gbm:Gbem_1009 metal-dependent phosphohydrolase HD sub domain YP_003023036.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_1008 type IV pilus assembly PilZ YP_003023037.1 PFAM: ketose-bisphosphate aldolase class-II; KEGG: gbm:Gbem_1007 fructose/tagatose bisphosphate aldolase-like protein YP_003023038.1 KEGG: gbm:Gbem_1006 hypothetical protein YP_003023039.1 PFAM: peptidylprolyl isomerase; KEGG: gbm:Gbem_1005 peptidylprolyl isomerase YP_003023040.1 PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_1004 hypothetical protein YP_003023041.1 PFAM: NLP/P60 protein; sporulation domain protein; KEGG: gbm:Gbem_1003 NLP/P60 protein YP_003023042.1 KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_003023043.1 transfers the fatty acyl group on membrane lipoproteins YP_003023044.1 PFAM: hypothetical protein; transporter-associated region; SMART: hypothetical protein; KEGG: gbm:Gbem_1000 hypothetical protein YP_003023045.1 PFAM: diacylglycerol kinase; phosphoesterase PA-phosphatase related; KEGG: gbm:Gbem_0999 diacylglycerol kinase YP_003023046.1 PFAM: protein of unknown function UPF0054; KEGG: gbm:Gbem_0998 protein of unknown function UPF0054 YP_003023047.1 KEGG: gbm:Gbem_0997 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003023048.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_003023049.1 TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: gbm:Gbem_0995 pseudouridine synthase YP_003023050.1 KEGG: gbm:Gbem_0994 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003023051.1 KEGG: gbm:Gbem_0993 hypothetical protein YP_003023052.1 KEGG: gbm:Gbem_0992 hypothetical protein YP_003023053.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_003023054.1 KEGG: gbm:Gbem_0990 hypothetical protein YP_003023055.1 PFAM: protein of unknown function UPF0027; KEGG: gbm:Gbem_0989 protein of unknown function UPF0027 YP_003023056.1 PFAM: protein of unknown function DUF101; KEGG: gbm:Gbem_0988 protein of unknown function DUF101 YP_003023057.1 KEGG: gbm:Gbem_0987 transcriptional regulator containing an HTH domain fused to a Zn-ribbon-like protein YP_003023058.1 PFAM: transport-associated; KEGG: gbm:Gbem_0986 transport-associated YP_003023059.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_0985 ABC transporter YP_003023060.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gbm:Gbem_0984 polar amino acid ABC transporter inner membrane protein YP_003023061.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gbm:Gbem_0983 extracellular solute-binding protein family 3 YP_003023062.1 KEGG: gbm:Gbem_0982 BioD-like protein N-terminal domain of phosphotransacetylase-like protein YP_003023063.1 PFAM: protein of unknown function DUF512; KEGG: gbm:Gbem_0981 protein of unknown function DUF512 YP_003023064.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: gbm:Gbem_0980 RNA chaperone Hfq YP_003023065.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_003023066.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_003023067.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; beta-lactamase; KEGG: gbm:Gbem_0977 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_003023068.1 PFAM: protein of unknown function UPF0047; KEGG: gbm:Gbem_0976 protein of unknown function UPF0047 YP_003023069.1 KEGG: gbm:Gbem_0975 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; PAS fold domain protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; PAS domain containing protein YP_003023070.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0974 response regulator receiver protein YP_003023071.1 KEGG: gbm:Gbem_0973 hypothetical protein YP_003023072.1 KEGG: gbm:Gbem_0972 hypothetical protein YP_003023073.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: gbm:Gbem_0971 ErfK/YbiS/YcfS/YnhG family protein YP_003023074.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_003023075.1 PFAM: metallophosphoesterase; KEGG: gbm:Gbem_0969 metallophosphoesterase YP_003023076.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_003023077.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: gbm:Gbem_0967 5-formyltetrahydrofolate cyclo-ligase YP_003023078.1 KEGG: gbm:Gbem_0966 hypothetical protein YP_003023079.1 PFAM: protein of unknown function DUF904; KEGG: gbm:Gbem_0965 hypothetical protein YP_003023080.1 KEGG: gbm:Gbem_0964 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003023081.1 PFAM: Roadblock/LC7 family protein; KEGG: gbm:Gbem_0963 roadblock/LC7 family protein YP_003023082.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: gbm:Gbem_0962 chromosome segregation protein SMC YP_003023083.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: gbm:Gbem_0961 ribosomal protein L17 YP_003023084.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_003023085.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_003023086.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_003023087.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_003023088.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_003023089.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: gbm:Gbem_0955 methionine aminopeptidase, type I YP_003023090.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_003023091.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_003023092.1 late assembly protein YP_003023093.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_003023094.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_003023095.1 binds 5S rRNA along with protein L5 and L25 YP_003023096.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_003023097.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_003023098.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_003023099.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_003023100.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_003023101.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_003023102.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_003023103.1 one of the stabilizing components for the large ribosomal subunit YP_003023104.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_003023105.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_003023106.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_003023107.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_003023108.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_003023109.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_003023110.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_003023111.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_003023112.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_003023113.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003023114.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003023115.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_003023116.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_003023117.1 KEGG: gbm:Gbem_0927 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_003023118.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_003023119.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_003023120.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_003023121.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_003023122.1 binds directly to 23S ribosomal RNA YP_003023123.1 KEGG: gbm:Gbem_0921 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein YP_003023124.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_003023125.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_003023126.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003023127.1 KEGG: gbm:Gbem_0917 hypothetical protein YP_003023128.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ppd:Ppro_0142 methyl-accepting chemotaxis sensory transducer YP_003023129.1 PFAM: radical SAM protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_0915 radical SAM domain protein YP_003023130.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_003023131.1 PFAM: ribosomal protein S9; KEGG: gbm:Gbem_0913 ribosomal protein S9 YP_003023132.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_003023133.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_003023134.1 KEGG: gbm:Gbem_0910 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding YP_003023135.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_003023136.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_003023137.1 PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein; KEGG: gbm:Gbem_0907 protein of unknown function DUF399 YP_003023138.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_003023140.1 PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: gbm:Gbem_0904 type II secretion system protein E YP_003023141.1 KEGG: gbm:Gbem_0903 hypothetical protein YP_003023142.1 PFAM: ABC transporter; KEGG: gbm:Gbem_0902 ABC-1 domain protein YP_003023143.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_003023144.1 KEGG: gbm:Gbem_0900 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003023145.1 KEGG: gbm:Gbem_0899 AsmA family protein YP_003023146.1 KEGG: gbm:Gbem_0898 hypothetical protein YP_003023147.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide domain protein; KEGG: gbm:Gbem_0897 radical SAM protein YP_003023148.1 PFAM: NLP/P60 protein; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: gbm:Gbem_0896 NLP/P60 protein YP_003023149.1 PFAM: protein of unknown function DUF147; YbbR family protein; KEGG: gbm:Gbem_0895 protein of unknown function DUF147 YP_003023150.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: gbm:Gbem_0894 ubiquinone/menaquinone biosynthesis methyltransferase YP_003023151.1 PFAM: methyltransferase type 12; methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; thiopurine S-methyltransferase; KEGG: gbm:Gbem_0893 methyltransferase type 12 YP_003023152.1 KEGG: gbm:Gbem_0892 hypothetical protein YP_003023153.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: gbm:Gbem_0891 membrane protein involved in aromatic hydrocarbon degradation YP_003023154.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: gbm:Gbem_0889 hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta YP_003023155.1 KEGG: gbm:Gbem_0888 inhibitor of MCP methylation-like protein YP_003023156.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gbm:Gbem_0887 metal dependent phosphohydrolase YP_003023157.1 PFAM: MerR family transcriptional regulator; KEGG: gbm:Gbem_0886 MerR family transcriptional regulator YP_003023158.1 KEGG: gbm:Gbem_0885 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_003023159.1 PFAM: glutaredoxin; KEGG: gbm:Gbem_0884 glutaredoxin YP_003023160.1 PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: gbm:Gbem_0883 PDZ/DHR/GLGF domain protein YP_003023161.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003023162.1 KEGG: gbm:Gbem_0881 hypothetical protein YP_003023163.1 KEGG: gbm:Gbem_0880 hypothetical protein YP_003023164.1 TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; KEGG: gbm:Gbem_0879 hopanoid biosynthesis associated protein HpnK YP_003023165.1 KEGG: gbm:Gbem_0878 hopanoid biosynthesis associated radical SAM protein HpnJ; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB YP_003023166.1 PFAM: purine or other phosphorylase family 1; KEGG: gbm:Gbem_0877 purine or other phosphorylase family 1 YP_003023167.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: gur:Gura_2965 phosphoenolpyruvate-protein phosphotransferase YP_003023168.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: gbm:Gbem_0874 phosphotransferase system, phosphocarrier protein HPr YP_003023169.1 PFAM: PTS system fructose subfamily IIA component; KEGG: gbm:Gbem_0873 PTS system fructose subfamily IIA component YP_003023170.1 PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_0872 hypothetical protein YP_003023171.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_003023172.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: gbm:Gbem_0870 sigma 54 modulation protein/ribosomal protein S30EA YP_003023173.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: gbm:Gbem_0869 RNA polymerase, sigma 54 subunit, RpoN YP_003023174.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_0868 ABC transporter YP_003023175.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: gbm:Gbem_0867 lipopolysaccharide transport periplasmic protein LptA YP_003023176.1 PFAM: protein of unknown function DUF1239; KEGG: gbm:Gbem_0866 protein of unknown function DUF1239 YP_003023177.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: gbm:Gbem_0864 RfaE bifunctional protein YP_003023178.1 KEGG: gbm:Gbem_0862 hypothetical protein YP_003023179.1 PFAM: transketolase; transketolase domain protein; KEGG: bbt:BBta_5637 transketolase subunit B YP_003023180.1 PFAM: transketolase; KEGG: bbt:BBta_5636 transketolase subunit A YP_003023181.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: scl:sce4870 NDP-sugar oxidoreductase YP_003023182.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gur:Gura_3788 DegT/DnrJ/EryC1/StrS aminotransferase YP_003023183.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; KEGG: gbm:Gbem_0856 CDP-glucose 4,6-dehydratase YP_003023184.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; KEGG: geo:Geob_2124 glucose-1-phosphate cytidylyltransferase YP_003023185.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: gbm:Gbem_0861 NAD-dependent epimerase/dehydratase YP_003023186.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: gme:Gmet_2331 lipopolysaccharide heptosyltransferase I YP_003023187.1 KEGG: dvl:Dvul_1278 hypothetical protein YP_003023188.1 PFAM: glycosyl transferase family 9; KEGG: gbm:Gbem_0860 lipopolysaccharide heptosyltransferase II YP_003023189.1 KEGG: geo:Geob_2112 hypothetical protein YP_003023190.1 PFAM: glycosyl transferase family 2; KEGG: spe:Spro_2888 glycosyl transferase YP_003023191.1 PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3222 glycosyl transferase, group 1 YP_003023192.1 PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3222 glycosyl transferase, group 1 YP_003023193.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: gbm:Gbem_0849 lipopolysaccharide heptosyltransferase II YP_003023194.1 KEGG: gbm:Gbem_0848 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_003023195.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: gbm:Gbem_0847 three-deoxy-D-manno-octulosonic-acid transferase domain protein YP_003023196.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: gbm:Gbem_0846 lipid A biosynthesis acyltransferase YP_003023197.1 KEGG: gbm:Gbem_0845 lipid A ABC exporter, fused ATPase and inner membrane proteins MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane proteins MsbA; PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA YP_003023198.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_003023199.1 KEGG: gbm:Gbem_0843 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase YP_003023200.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: gbm:Gbem_0842 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_003023201.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_003023202.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: gbm:Gbem_0840 outer membrane chaperone Skp (OmpH) YP_003023203.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: gbm:Gbem_0839 outer membrane protein assembly complex, YaeT protein YP_003023204.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_0838 ABC transporter YP_003023205.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_0837 lipoprotein releasing system, transmembrane protein, LolC/E family YP_003023206.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gbm:Gbem_0836 lysyl-tRNA synthetase YP_003023207.1 PFAM: regulator of chromosome condensation RCC1; KEGG: gbm:Gbem_0835 regulator of chromosome condensation, RCC1 YP_003023208.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_003023209.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: gme:Gmet_3429 IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase YP_003023210.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: gbm:Gbem_0833 methyltransferase type 11 YP_003023211.1 PFAM: alpha/beta hydrolase fold; KEGG: gbm:Gbem_0832 alpha/beta hydrolase fold YP_003023212.1 KEGG: gbm:Gbem_0831 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; aminotransferase class-III; aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003023213.1 PFAM: protein of unknown function DUF45; KEGG: gbm:Gbem_0829 protein of unknown function DUF45 YP_003023214.1 KEGG: gbm:Gbem_0828 hypothetical protein YP_003023215.1 PFAM: fatty acid hydroxylase; KEGG: gbm:Gbem_0827 fatty acid hydroxylase YP_003023216.1 KEGG: gbm:Gbem_0826 hypothetical protein YP_003023217.1 KEGG: gbm:Gbem_0825 hypothetical protein YP_003023218.1 KEGG: gbm:Gbem_0824 hypothetical protein YP_003023219.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_003023220.1 KEGG: gbm:Gbem_0822 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain YP_003023221.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gbm:Gbem_0821 apolipoprotein N-acyltransferase YP_003023222.1 KEGG: gbm:Gbem_0820 hypothetical protein YP_003023223.1 KEGG: gbm:Gbem_0819 hypothetical protein YP_003023224.1 KEGG: gbm:Gbem_0818 cytochrome C peroxidase YP_003023225.1 KEGG: gbm:Gbem_0817 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_003023226.1 KEGG: gbm:Gbem_0816 outer membrane protein YP_003023227.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: gbm:Gbem_0815 formamidopyrimidine-DNA glycolase, H2TH DNA binding YP_003023228.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_0814 protein of unknown function DUF6 transmembrane YP_003023229.1 KEGG: gbm:Gbem_0813 hypothetical protein YP_003023230.1 KEGG: gbm:Gbem_0812 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent hydrolase HDOD; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003023231.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; KEGG: gbm:Gbem_0811 Hpt sensor hybrid histidine kinase YP_003023232.1 KEGG: gbm:Gbem_0810 hypothetical protein YP_003023233.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0809 methyl-accepting chemotaxis sensory transducer YP_003023234.1 TIGRFAM: uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase superfamily; KEGG: gbm:Gbem_0808 uracil-DNA glycosylase YP_003023235.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_0807 radical SAM protein YP_003023236.1 PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_3393 XRE family transcriptional regulator YP_003023237.1 KEGG: gbm:Gbem_3394 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003023238.1 KEGG: gbm:Gbem_3395 hypothetical protein YP_003023239.1 KEGG: gbm:Gbem_3396 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003023240.1 PFAM: protein of unknown function DUF152; KEGG: gbm:Gbem_3397 protein of unknown function DUF152 YP_003023241.1 KEGG: gbm:Gbem_3398 hypothetical protein YP_003023242.1 KEGG: gbm:Gbem_3399 hypothetical protein YP_003023243.1 KEGG: gbm:Gbem_3400 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1 YP_003023244.1 PFAM: glycoside hydrolase family 57; KEGG: gbm:Gbem_3401 glycoside hydrolase family 57 YP_003023245.1 PFAM: nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gbm:Gbem_3402 nucleotidyl transferase YP_003023246.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_3403 response regulator receiver protein YP_003023247.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; GAF domain protein; ATP-binding region ATPase domain protein; KEGG: gur:Gura_0853 GAF sensor signal transduction histidine kinase YP_003023248.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: gbm:Gbem_3406 Crp/Fnr family transcriptional regulator YP_003023249.1 PFAM: permease YjgP/YjgQ family protein; KEGG: gbm:Gbem_3407 permease YjgP/YjgQ family protein YP_003023250.1 PFAM: permease YjgP/YjgQ family protein; KEGG: gbm:Gbem_3408 permease YjgP/YjgQ family protein YP_003023251.1 PFAM: cell surface receptor IPT/TIG domain protein; KEGG: gbm:Gbem_3409 cell surface receptor IPT/TIG domain protein YP_003023252.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gbm:Gbem_3410 glyoxalase/bleomycin resistance protein/dioxygenase YP_003023253.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: gbm:Gbem_3411 cytochrome C biogenesis protein transmembrane region YP_003023254.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: gbm:Gbem_3412 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003023255.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_3413 Fis family transcriptional regulator YP_003023256.1 KEGG: gbm:Gbem_3414 hypothetical protein YP_003023257.1 PFAM: polyprenyl synthetase; KEGG: gbm:Gbem_3415 polyprenyl synthetase YP_003023258.1 KEGG: gbm:Gbem_3416 hypothetical protein YP_003023259.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_003023260.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; KEGG: gbm:Gbem_3418 aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003023261.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: gbm:Gbem_3420 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_003023262.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_003023263.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gbm:Gbem_3422 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003023264.1 KEGG: gbm:Gbem_3423 hypothetical protein YP_003023265.1 PFAM: protein of unknown function UPF0102; KEGG: gbm:Gbem_3424 protein of unknown function UPF0102 YP_003023266.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_003023268.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_003023269.1 KEGG: gbm:Gbem_3427 hypothetical protein YP_003023270.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_003023271.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein; RimM protein; KEGG: gbm:Gbem_3429 16S rRNA processing protein RimM YP_003023272.1 KEGG: gbm:Gbem_3430 KH, type 1, domain protein YP_003023273.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_003023274.1 KEGG: gbm:Gbem_3432 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003023275.1 PFAM: SirA family protein; KEGG: gbm:Gbem_3433 SirA family protein YP_003023276.1 KEGG: gbm:Gbem_3434 hypothetical protein YP_003023277.1 KEGG: gbm:Gbem_3435 hypothetical protein YP_003023278.1 PFAM: protein of unknown function DUF721; KEGG: gbm:Gbem_3436 hypothetical protein YP_003023279.1 PFAM: methyltransferase small; RNA methylase; KEGG: gbm:Gbem_3437 methyltransferase small YP_003023280.1 PFAM: glycosyl transferase family 2; KEGG: geo:Geob_1223 glycosyl transferase family 2 YP_003023281.1 KEGG: geo:Geob_1222 hypothetical protein YP_003023282.1 KEGG: gbm:Gbem_3438 hypothetical protein YP_003023283.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_3439 glycosyl transferase group 1 YP_003023284.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_3440 glycosyl transferase family 2 YP_003023285.1 PFAM: glycosyl transferase family 2; KEGG: gsu:GSU2244 glycosyl transferase, group 2 family protein YP_003023286.1 PFAM: glycosyl transferase group 1; KEGG: rpt:Rpal_4582 glycosyl transferase group 1 YP_003023287.1 PFAM: glycosyl transferase group 1; KEGG: rpt:Rpal_4581 glycosyl transferase group 1 YP_003023288.1 PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: gbm:Gbem_3446 polysaccharide biosynthesis protein YP_003023289.1 KEGG: geo:Geob_1459 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003023290.1 PFAM: polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: geo:Geob_1458 polysaccharide biosynthesis protein CapD YP_003023291.1 PFAM: dTDP-4-dehydrorhamnose reductase; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: gsu:GSU2247 carbohydrate oxidoreductase YP_003023292.1 KEGG: gbm:Gbem_3447 hypothetical protein YP_003023293.1 PFAM: regulatory protein MarR; KEGG: gbm:Gbem_3448 MarR family transcriptional regulator YP_003023294.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_3449 glycosyl transferase group 1 YP_003023295.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_3450 glycosyl transferase family 2 YP_003023296.1 KEGG: gbm:Gbem_3451 hypothetical protein YP_003023297.1 TIGRFAM: cytochrome C family protein; KEGG: gme:Gmet_2899 cytochrome C family protein YP_003023298.1 TIGRFAM: cytochrome C biogenesis protein CcsB; PFAM: cytochrome C assembly protein; KEGG: gbm:Gbem_3453 cytochrome C biogenesis protein CcsB YP_003023299.1 PFAM: ResB family protein; KEGG: gbm:Gbem_3454 ResB family protein YP_003023300.1 KEGG: gbm:Gbem_3455 hypothetical protein YP_003023301.1 KEGG: gbm:Gbem_3456 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_003023302.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_003023303.1 involved in de novo purine biosynthesis YP_003023304.1 KEGG: gbm:Gbem_3459 uncharacterized metal-binding protein-like protein YP_003023305.1 Contains selenocysteine; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: gbm:Gbem_3460 selenide, water dikinase YP_003023306.1 KEGG: gbm:Gbem_3461 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003023307.1 TIGRFAM: phosphomethylpyrimidine kinase; thiamine-phosphate pyrophosphorylase; PFAM: phosphomethylpyrimidine kinase type-1; thiamine monophosphate synthase; PfkB domain protein; KEGG: gbm:Gbem_3462 phosphomethylpyrimidine kinase YP_003023308.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003023309.1 KEGG: gbm:Gbem_3464 heavy metal sensor signal transduction histidine kinase; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003023310.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_3465 transcriptional regulator YP_003023311.1 KEGG: gbm:Gbem_3466 hypothetical protein YP_003023312.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_1165 radical SAM protein YP_003023313.1 KEGG: gbm:Gbem_1164 hypothetical protein YP_003023314.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_1163 radical SAM protein YP_003023315.1 KEGG: gbm:Gbem_1162 hypothetical protein YP_003023316.1 PFAM: cytochrome C assembly protein; KEGG: gur:Gura_0511 cytochrome C assembly protein YP_003023317.1 KEGG: gbm:Gbem_1160 hypothetical protein YP_003023318.1 KEGG: gbm:Gbem_1158 hypothetical protein YP_003023319.1 PFAM: Domain of unknown function DUF1927; cell surface receptor IPT/TIG domain protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: gur:Gura_0500 cytochrome C family protein YP_003023320.1 KEGG: gbm:Gbem_1155 hypothetical protein YP_003023321.1 TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_1154 cytochrome C family protein YP_003023322.1 TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_1153 cytochrome C family protein YP_003023323.1 TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_2888 hypothetical protein YP_003023324.1 KEGG: gbm:Gbem_3468 hypothetical protein YP_003023325.1 KEGG: geo:Geob_0065 hypothetical protein YP_003023326.1 KEGG: geo:Geob_0064 membrane protein-like protein YP_003023327.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: geo:Geob_0063 ABC transporter YP_003023328.1 PFAM: protein of unknown function DUF214; KEGG: geo:Geob_0062 protein of unknown function DUF214 YP_003023329.1 PFAM: protein of unknown function DUF214; KEGG: geo:Geob_0061 protein of unknown function DUF214 YP_003023330.1 KEGG: gbm:Gbem_3469 hypothetical protein YP_003023331.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: geo:Geob_0066 radical SAM protein YP_003023332.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: geo:Geob_0066 radical SAM protein YP_003023333.1 KEGG: geo:Geob_0060 hypothetical protein YP_003023334.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: geo:Geob_0058 radical SAM protein YP_003023335.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: geo:Geob_0058 radical SAM protein YP_003023336.1 KEGG: geo:Geob_0057 ResB-like protein required for cytochrome C biosynthesis YP_003023337.1 PFAM: cytochrome C assembly protein; KEGG: geo:Geob_0056 cytochrome C assembly protein YP_003023340.1 SMART: Fibronectin type III domain protein; KEGG: geo:Geob_1967 filamentous hemeagglutinin outer membrane protein YP_003023341.1 KEGG: geo:Geob_1967 filamentous hemeagglutinin outer membrane protein YP_003023342.1 TIGRFAM: cytochrome C family protein; KEGG: gur:Gura_0076 cytochrome C family protein YP_003023343.1 TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_1153 cytochrome C family protein YP_003023344.1 KEGG: gbm:Gbem_2888 hypothetical protein YP_003023345.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: gme:Gmet_1896 dihydrolipoamide dehydrogenase YP_003023346.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gme:Gmet_1895 MarR family transcriptional regulator YP_003023347.1 KEGG: gbm:Gbem_3499 hypothetical protein YP_003023348.1 PFAM: peptidase M23; KEGG: gbm:Gbem_3500 peptidase M23B YP_003023349.1 KEGG: gbm:Gbem_3501 phosphoglycerate mutase 1 family; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase YP_003023350.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Collagen triple helix repeat; KEGG: gbm:Gbem_3502 penicillin-binding protein, 1A family YP_003023351.1 KEGG: gbm:Gbem_3503 phospholipase D/transphosphatidylase YP_003023352.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_003023353.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_003023354.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_003023355.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; KEGG: gbm:Gbem_3507 heat-inducible transcription repressor HrcA YP_003023356.1 KEGG: gbm:Gbem_3508 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003023357.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gbm:Gbem_3509 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003023358.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: gbm:Gbem_3510 protein TolQ YP_003023359.1 TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; KEGG: gbm:Gbem_3511 protein TolR YP_003023360.1 TIGRFAM: TonB family protein; KEGG: gbm:Gbem_3512 TonB family protein YP_003023361.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: hypothetical protein; KEGG: gbm:Gbem_3513 Tol-Pal system beta propeller repeat protein TolB YP_003023362.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: gbm:Gbem_3514 peptidoglycan-associated lipoprotein YP_003023363.1 KEGG: gbm:Gbem_3515 tol-pal system protein YbgF; TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; SMART: hypothetical protein YP_003023364.1 KEGG: gbm:Gbem_3516 hypothetical protein YP_003023365.1 KEGG: gbm:Gbem_3517 hypothetical protein YP_003023366.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_003023367.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_003023368.1 KEGG: gbm:Gbem_3520 carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein YP_003023369.1 PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: gbm:Gbem_3521 HhH-GPD family protein YP_003023370.1 KEGG: gbm:Gbem_3522 hypothetical protein YP_003023371.1 PFAM: NUDIX hydrolase; KEGG: gbm:Gbem_3526 NUDIX hydrolase YP_003023372.1 KEGG: gbm:Gbem_3527 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003023373.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: gbm:Gbem_3528 sun protein YP_003023374.1 KEGG: gbm:Gbem_3529 hypothetical protein YP_003023375.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: gbm:Gbem_3530 phospholipase D/transphosphatidylase YP_003023376.1 KEGG: gbm:Gbem_3531 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003023377.1 PFAM: ABC transporter; KEGG: gbm:Gbem_3532 ABC transporter YP_003023378.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3533 ABC transporter YP_003023379.1 PFAM: periplasmic solute binding protein; KEGG: gbm:Gbem_3534 periplasmic solute binding protein YP_003023380.1 PFAM: ferric-uptake regulator; KEGG: gbm:Gbem_3535 ferric uptake regulator, Fur family YP_003023381.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_3536 type IV pilus assembly PilZ YP_003023382.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: gbm:Gbem_3537 L-threonine-O-3-phosphate decarboxylase YP_003023383.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: gbm:Gbem_3538 cobalamin biosynthesis protein CobD YP_003023384.1 KEGG: gbm:Gbem_3539 cobyric acid synthase CobQ; TIGRFAM: cobyric acid synthase CobQ; precorrin-3B C17-methyltransferase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobyrinic acid ac-diamide synthase YP_003023385.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: gbm:Gbem_3540 cobalamin (vitamin B12) biosynthesis CbiG protein YP_003023386.1 KEGG: gbm:Gbem_3541 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003023387.1 KEGG: gbm:Gbem_3542 precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003023388.1 KEGG: gbm:Gbem_3543 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; methyltransferase type 12 YP_003023389.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: gbm:Gbem_3544 cobalamin biosynthesis protein CbiD YP_003023390.1 PFAM: precorrin-8X methylmutase CbiC/CobH; KEGG: gbm:Gbem_3545 precorrin-8X methylmutase CbiC/CobH YP_003023391.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: gbm:Gbem_3546 cobalamin (vitamin B12) biosynthesis CbiX protein YP_003023392.1 PFAM: peptidase M16 domain protein; KEGG: gbm:Gbem_3547 peptidase M16 domain protein YP_003023393.1 KEGG: gbm:Gbem_3548 membrane protein-like protein YP_003023394.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_003023395.1 PFAM: transposase IS4 family protein; KEGG: ppd:Ppro_1770 transposase, IS4 family protein YP_003023396.1 KEGG: gbm:Gbem_3551 hypothetical protein YP_003023397.1 PFAM: peptidase U32; KEGG: gbm:Gbem_3552 peptidase U32 YP_003023398.1 KEGG: gbm:Gbem_3553 hypothetical protein YP_003023399.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_003023400.1 PFAM: cyclase family protein; KEGG: gbm:Gbem_3555 cyclase family protein YP_003023401.1 KEGG: gbm:Gbem_3556 hypothetical protein YP_003023402.1 TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: gbm:Gbem_3557 pseudouridine synthase YP_003023403.1 PFAM: NUDIX hydrolase; KEGG: gbm:Gbem_3558 NUDIX hydrolase YP_003023404.1 PFAM: peptidylprolyl isomerase; KEGG: gbm:Gbem_3559 peptidylprolyl isomerase YP_003023405.1 PFAM: rubrerythrin; KEGG: gbm:Gbem_3560 rubrerythrin YP_003023406.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: gbm:Gbem_3561 NAD-dependent epimerase/dehydratase YP_003023407.1 Inhibits transcription at high concentrations of nickel YP_003023408.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: gbm:Gbem_3563 CMP/dCMP deaminase zinc-binding YP_003023409.1 KEGG: gbm:Gbem_3564 hypothetical protein YP_003023410.1 KEGG: gbm:Gbem_3581 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_003023411.1 KEGG: gbm:Gbem_0315 hypothetical protein YP_003023412.1 KEGG: gbm:Gbem_3583 hypothetical protein YP_003023413.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: gbm:Gbem_3584 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003023414.1 KEGG: gbm:Gbem_3585 hypothetical protein YP_003023415.1 KEGG: gbm:Gbem_3586 NosL protein YP_003023416.1 KEGG: gbm:Gbem_3587 hypothetical protein YP_003023417.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_3588 protein of unknown function DUF214 YP_003023418.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3589 ABC transporter YP_003023419.1 KEGG: gbm:Gbem_3590 hypothetical protein YP_003023420.1 PFAM: protein of unknown function DUF1555; KEGG: lch:Lcho_2324 hypothetical protein YP_003023421.1 PFAM: peptidase M23; KEGG: gbm:Gbem_3591 peptidase M23B YP_003023422.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: gbm:Gbem_3592 PDZ/DHR/GLGF domain protein YP_003023423.1 KEGG: gbm:Gbem_3593 hypothetical protein YP_003023424.1 KEGG: gbm:Gbem_3594 hypothetical protein YP_003023425.1 KEGG: geo:Geob_2028 alpha/beta hydrolase fold protein YP_003023426.1 KEGG: gur:Gura_1529 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003023427.1 PFAM: glycosyltransferase 36 associated; KEGG: gur:Gura_4340 glycosyltransferase 36 YP_003023428.1 KEGG: gme:Gmet_2173 parallel beta-helix repeat-containing protein YP_003023429.1 KEGG: pfl:PFL_2007 tail fiber protein H YP_003023430.1 KEGG: dde:Dde_3392 hypothetical protein YP_003023431.1 PFAM: Baseplate J family protein; KEGG: dde:Dde_3391 baseplate assembly protein YP_003023432.1 KEGG: dvm:DvMF_1302 baseplate assembly protein YP_003023433.1 KEGG: dde:Dde_3389 baseplate assembly protein YP_003023434.1 KEGG: bid:Bind_3520 hypothetical protein YP_003023435.1 KEGG: dde:Dde_3388 hypothetical protein YP_003023436.1 KEGG: dvu:DVU1106 hypothetical protein YP_003023437.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sek:SSPA2381 hypothetical protein YP_003023440.1 KEGG: dvm:DvMF_1294 hypothetical protein YP_003023441.1 KEGG: dde:Dde_3382 hypothetical protein YP_003023442.1 KEGG: dde:Dde_3381 hypothetical protein YP_003023444.1 KEGG: mxa:MXAN_1856 hypothetical protein YP_003023448.1 KEGG: cdc48-like protein YP_003023451.1 KEGG: dvu:DVU2705 phage uncharacterized protein YP_003023452.1 KEGG: tgr:Tgr7_0431 protein of unknown function DUF1804 YP_003023454.1 KEGG: dvu:DVU1125 hypothetical protein YP_003023455.1 KEGG: GE16730 gene product from transcript GE16730-RA YP_003023457.1 KEGG: bpy:Bphyt_4029 hypothetical protein YP_003023458.1 KEGG: pap:PSPA7_2430 lytic enzyme YP_003023459.1 KEGG: glo:Glov_2326 hypothetical protein YP_003023460.1 KEGG: hypothetical protein YP_003023461.1 KEGG: vvu:VV1_0066 bacteriophage phi 1.45 protein-like protein YP_003023462.1 KEGG: shw:Sputw3181_2524 phage protein YP_003023463.1 KEGG: dal:Dalk_3572 cytoplasmic protein YP_003023464.1 KEGG: ect:ECIAI39_1929 conserved hypothetical protein from phage origin YP_003023469.1 KEGG: glo:Glov_0525 hypothetical protein YP_003023470.1 KEGG: btr:Btr_1417 hypothetical protein YP_003023475.1 SMART: ATPase AAA; KEGG: mfa:Mfla_2717 phage-like protein YP_003023476.1 KEGG: spc:Sputcn32_0166 integrase protein YP_003023477.1 KEGG: hdu:HD1532 hypothetical protein YP_003023480.1 KEGG: dal:Dalk_3580 hypothetical protein YP_003023481.1 KEGG: dal:Dalk_3581 transcriptional regulator, Nlp YP_003023483.1 KEGG: gbm:Gbem_2822 hypothetical protein YP_003023484.1 PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: gur:Gura_4340 glycosyltransferase 36 YP_003023485.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: gbm:Gbem_3598 DEAD/DEAH box helicase YP_003023486.1 PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_3599 thioesterase superfamily protein YP_003023487.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3600 methyl-accepting chemotaxis sensory transducer YP_003023488.1 KEGG: gbm:Gbem_3601 outer membrane lipoprotein-sorting protein YP_003023489.1 KEGG: gbm:Gbem_3602 hypothetical protein YP_003023490.1 KEGG: gbm:Gbem_3603 tetratricopeptide TPR_2 repeat protein YP_003023491.1 PFAM: protein of unknown function DUF37; KEGG: gbm:Gbem_3604 protein of unknown function DUF37 YP_003023492.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_3605 tetratricopeptide TPR_2 repeat protein YP_003023493.1 KEGG: gbm:Gbem_3608 hypothetical protein YP_003023494.1 PFAM: MOFRL domain protein; KEGG: gbm:Gbem_3609 MOFRL domain protein YP_003023495.1 KEGG: gbm:Gbem_3610 hypothetical protein YP_003023496.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3611 methyl-accepting chemotaxis sensory transducer YP_003023497.1 KEGG: gbm:Gbem_3615 two component heavy metal response transcriptional regulator, winged helix family; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003023498.1 KEGG: gbm:Gbem_3616 heavy metal sensor signal transduction histidine kinase; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003023499.1 KEGG: gbm:Gbem_3617 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein; PAS domain containing protein YP_003023500.1 PFAM: sulfatase; KEGG: gbm:Gbem_3618 sulfatase YP_003023501.1 KEGG: gsu:GSU2949 PAP2 family protein YP_003023502.1 PFAM: ABC transporter; iron dependent repressor; transport system permease; SMART: iron dependent repressor; KEGG: gbm:Gbem_3621 ABC transporter YP_003023503.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3622 ABC transporter YP_003023504.1 KEGG: gbm:Gbem_3623 hypothetical protein YP_003023505.1 PFAM: periplasmic solute binding protein; KEGG: gbm:Gbem_3624 periplasmic solute binding protein YP_003023506.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pca:Pcar_1364 glucose/ribitol dehydrogenase YP_003023507.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: gbm:Gbem_3625 NCAIR mutase (PurE)-related protein-like protein YP_003023508.1 PFAM: protein of unknown function DUF111; KEGG: gbm:Gbem_3626 protein of unknown function DUF111 YP_003023509.1 PFAM: phosphatidylglycerophosphatase A; KEGG: gbm:Gbem_3627 phosphatidylglycerophosphatase A YP_003023510.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: damage inducible protein CinA; molybdopterin binding domain; KEGG: gbm:Gbem_3628 competence/damage-inducible protein CinA YP_003023511.1 KEGG: gbm:Gbem_3629 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein YP_003023512.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_003023513.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: gbm:Gbem_3631 twitching motility protein YP_003023514.1 PFAM: RecX family transcriptional regulator; KEGG: gbm:Gbem_3632 RecX family transcriptional regulator YP_003023515.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003023516.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_3634 response regulator receiver sensor signal transduction histidine kinase YP_003023517.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_003023518.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_003023519.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_003023520.1 PFAM: DNA polymerase beta domain protein region; KEGG: gur:Gura_0409 DNA polymerase subunit beta YP_003023521.1 PFAM: protein of unknown function DUF86; KEGG: gur:Gura_4166 hypothetical protein YP_003023522.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_003023523.1 PFAM: NUDIX hydrolase; KEGG: gbm:Gbem_3639 NUDIX hydrolase YP_003023524.1 KEGG: gbm:Gbem_3640 hypothetical protein YP_003023525.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_003023526.1 KEGG: gbm:Gbem_3642 fibronectin, type III domain protein YP_003023527.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: gbm:Gbem_3643 glutamyl-tRNA(Gln) amidotransferase subunit C YP_003023528.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003023529.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003023530.1 KEGG: gbm:Gbem_3646 translation initiation factor, aIF-2BI family; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_003023531.1 PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; KEGG: gbm:Gbem_3647 glutamate-ammonia ligase adenylyltransferase YP_003023532.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_3648 tol-pal system-associated acyl-CoA thioesterase YP_003023533.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_003023534.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_003023535.1 PFAM: K potassium transporter; KEGG: gbm:Gbem_3651 K potassium transporter YP_003023536.1 KEGG: gbm:Gbem_3652 hypothetical protein YP_003023537.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: gbm:Gbem_3653 endonuclease/exonuclease/phosphatase YP_003023538.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3654 methyl-accepting chemotaxis sensory transducer YP_003023539.1 PFAM: OsmC family protein; KEGG: gbm:Gbem_3655 OsmC family protein YP_003023540.1 KEGG: gbm:Gbem_3656 hypothetical protein YP_003023541.1 KEGG: gbm:Gbem_3657 hypothetical protein YP_003023542.1 TIGRFAM: ferrous iron transporter B; small GTP-binding protein; PFAM: Ferrous iron transporter B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: gbm:Gbem_3658 ferrous iron transporter B YP_003023543.1 PFAM: FeoA family protein; KEGG: gbm:Gbem_3659 FeoA family protein YP_003023544.1 PFAM: FeoA family protein; KEGG: gbm:Gbem_3660 FeoA family protein YP_003023545.1 PFAM: carbohydrate-selective porin OprB; KEGG: gbm:Gbem_3661 carbohydrate-selective porin OprB YP_003023546.1 PFAM: ferric-uptake regulator; KEGG: gbm:Gbem_3662 ferric uptake regulator, Fur family YP_003023547.1 KEGG: gbm:Gbem_3663 hypothetical protein YP_003023548.1 PFAM: protein of unknown function DUF1264; KEGG: eba:ebA4629 hypothetical protein YP_003023549.1 PFAM: protein of unknown function DUF937; KEGG: gbm:Gbem_3664 protein of unknown function DUF937 YP_003023550.1 PFAM: heat shock protein Hsp20; CS; KEGG: gbm:Gbem_3665 heat shock protein HSP20 YP_003023551.1 PFAM: heat shock protein Hsp20; KEGG: gbm:Gbem_3666 heat shock protein HSP20 YP_003023552.1 KEGG: gbm:Gbem_3669 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) YP_003023553.1 KEGG: gbm:Gbem_3670 hypothetical protein YP_003023554.1 KEGG: gbm:Gbem_3672 hypothetical protein YP_003023555.1 KEGG: gbm:Gbem_3673 hypothetical protein YP_003023557.1 KEGG: gur:Gura_4031 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003023558.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbm:Gbem_3686 thioredoxin reductase YP_003023559.1 KEGG: gbm:Gbem_3687 hypothetical protein YP_003023560.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gbm:Gbem_3688 cation diffusion facilitator family transporter YP_003023561.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_003023562.1 KEGG: gbm:Gbem_3690 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase; helicase domain protein; HRDC domain protein; SMART: helicase; HRDC domain protein; DEAD-like helicase YP_003023563.1 KEGG: gbm:Gbem_3691 hypothetical protein YP_003023564.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_003023565.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: gbm:Gbem_3693 ExsB protein YP_003023566.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: gbm:Gbem_3694 RNA polymerase, sigma 70 subunit, RpoD family YP_003023567.1 KEGG: gbm:Gbem_3695 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_003023568.1 PFAM: colicin V production protein; KEGG: gbm:Gbem_3696 colicin V production protein YP_003023569.1 PFAM: GatB/Yqey domain protein; KEGG: gbm:Gbem_3697 GatB/YqeY domain protein YP_003023570.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_003023571.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_003023572.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_003023573.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_003023574.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_003023575.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_003023576.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_003023577.1 KEGG: gbm:Gbem_3705 hypothetical protein YP_003023578.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_003023579.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003023580.1 KEGG: gbm:Gbem_3708 protein-(glutamine-N5) methyltransferase, release factor-specific; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small YP_003023581.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_003023582.1 PFAM: protein of unknown function DUF1385; KEGG: gbm:Gbem_3710 protein of unknown function DUF1385 YP_003023583.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_003023584.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_003023585.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_003023586.1 PFAM: class I peptide chain release factor; KEGG: gbm:Gbem_3714 class I peptide chain release factor YP_003023587.1 PFAM: metallophosphoesterase; KEGG: gbm:Gbem_3715 metallophosphoesterase YP_003023588.1 KEGG: gbm:Gbem_3716 hypothetical protein YP_003023589.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_3717 protein of unknown function DUF6 transmembrane YP_003023590.1 KEGG: avi:Avi_0161 hypothetical protein YP_003023591.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; glycosyl transferase family 2; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: gbm:Gbem_3718 tetratricopeptide TPR_2 repeat protein YP_003023592.1 PFAM: hypothetical protein; Tetratricopeptide TPR_3; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3719 hypothetical protein YP_003023593.1 PFAM: glycosyl transferase group 1; KEGG: neu:NE2092 TPR repeat-containing glycosyl transferase YP_003023594.1 KEGG: bid:Bind_0441 hypothetical protein YP_003023595.1 PFAM: radical SAM protein; methyltransferase type 11; KEGG: met:M446_4900 radical SAM domain-containing protein YP_003023596.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; methyltransferase type 11; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein YP_003023597.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_3739 glycosyl transferase family 2 YP_003023598.1 PFAM: glycosyl transferase family 2; methyltransferase type 11; hypothetical protein; methionine biosynthesis MetW protein; methyltransferase type 12; hypothetical protein; SMART: hypothetical protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2 YP_003023599.1 PFAM: hypothetical protein; TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3741 hypothetical protein YP_003023600.1 PFAM: hypothetical protein; TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3742 tetratricopeptide TPR_2 repeat protein YP_003023601.1 KEGG: hypothetical protein YP_003023602.1 acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_003023603.1 PFAM: flagellar FlbT family protein; KEGG: gbm:Gbem_3744 flagellar FlbT family protein YP_003023604.1 KEGG: gbm:Gbem_3745 hypothetical protein YP_003023605.1 KEGG: gbm:Gbem_3746 flagellin domain protein YP_003023606.1 PFAM: hypothetical protein; TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3747 hypothetical protein YP_003023607.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_3; hypothetical protein; SMART: hypothetical protein; KEGG: gbm:Gbem_3748 TPR repeat-containing protein YP_003023608.1 PFAM: hypothetical protein; TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3748 hypothetical protein YP_003023609.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_3749 glycosyl transferase group 1 YP_003023610.1 PFAM: OmpA/MotB domain protein; KEGG: gbm:Gbem_3751 OmpA/MotB domain protein YP_003023611.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: gbm:Gbem_3752 MotA/TolQ/ExbB proton channel YP_003023612.1 PFAM: flagellar FlbD family protein; KEGG: gbm:Gbem_3753 flagellar FlbD family protein YP_003023613.1 TIGRFAM: flagellar hook-associated protein 3; KEGG: gbm:Gbem_3754 flagellar hook-associated protein 3 YP_003023614.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: gbm:Gbem_3755 flagellar hook-associated protein FlgK YP_003023615.1 PFAM: FlgN family protein; KEGG: gbm:Gbem_3756 hypothetical protein YP_003023616.1 PFAM: anti-sigma-28 factor FlgM family protein; KEGG: gbm:Gbem_3757 negative regulator of flagellin synthesis YP_003023617.1 KEGG: gbm:Gbem_3758 rod binding protein-like protein YP_003023618.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_003023619.1 PFAM: flagellar L-ring protein; KEGG: gbm:Gbem_3760 flagellar L-ring protein YP_003023620.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: gbm:Gbem_3761 flagella basal body P-ring formation protein FlgA YP_003023621.1 makes up the distal portion of the flagellar basal body rod YP_003023622.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: gbm:Gbem_3763 flagellar basal body rod protein YP_003023623.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_3764 RNA polymerase, sigma 28 subunit, FliA/WhiG YP_003023624.1 KEGG: gbm:Gbem_3765 cobyrinic acid a,c-diamide synthase YP_003023625.1 PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: ATPase AAA; KEGG: gbm:Gbem_3766 GTP-binding signal recognition particle SRP54 G-domain YP_003023626.1 membrane protein involved in the flagellar export apparatus YP_003023627.1 PFAM: FRG domain protein; KEGG: gbm:Gbem_3768 FRG domain protein YP_003023628.1 KEGG: gbm:Gbem_3769 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003023629.1 SMART: helicase c2; DEAD-like helicase; KEGG: gbm:Gbem_3770 helicase C2 YP_003023630.1 PFAM: phosphoribosyltransferase; KEGG: gbm:Gbem_3771 phosphoribosyltransferase YP_003023631.1 PFAM: protein of unknown function DUF1121; KEGG: gbm:Gbem_3772 protein of unknown function DUF1121 YP_003023632.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: gbm:Gbem_3773 NADPH-dependent FMN reductase YP_003023633.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_003023634.1 PFAM: protein of unknown function DUF163; KEGG: gbm:Gbem_3775 protein of unknown function DUF163 YP_003023635.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: gbm:Gbem_3776 iojap-like protein YP_003023636.1 KEGG: gbm:Gbem_3777 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003023637.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_003023638.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_003023639.1 KEGG: gbm:Gbem_3780 hypothetical protein YP_003023640.1 PFAM: phosphate transporter; KEGG: gbm:Gbem_3781 phosphate transporter YP_003023641.1 PFAM: protein of unknown function DUF47; KEGG: gbm:Gbem_3782 protein of unknown function DUF47 YP_003023642.1 KEGG: gbm:Gbem_3783 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA YP_003023643.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_003023644.1 KEGG: afw:Anae109_3553 hypothetical protein YP_003023645.1 KEGG: gbm:Gbem_3785 hypothetical protein YP_003023646.1 KEGG: gbm:Gbem_3787 lipoprotein YP_003023647.1 KEGG: gbm:Gbem_3788 hypothetical protein YP_003023648.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_003023649.1 PFAM: protein of unknown function DUF486; KEGG: gbm:Gbem_3790 protein of unknown function DUF486 YP_003023650.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: gbm:Gbem_3791 antibiotic biosynthesis monooxygenase YP_003023651.1 PFAM: xylose isomerase; KEGG: gbm:Gbem_3793 xylose isomerase domain protein TIM barrel YP_003023652.1 PFAM: TrkA-N domain protein; ion transport 2 domain protein ; TrkA-C domain protein; KEGG: gbm:Gbem_3794 TrkA-N domain protein YP_003023653.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: gbm:Gbem_3795 transcriptional regulator, GntR family YP_003023654.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_003023655.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_003023656.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_003023657.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003023658.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_003023659.1 KEGG: gbm:Gbem_3801 CopG domain protein DNA-binding domain protein YP_003023660.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; ATPase associated with various cellular activities AAA_5; hydrogenase large subunit domain protein; SMART: ATPase AAA; KEGG: gbm:Gbem_3802 sigma54 specific transcriptional regulator YP_003023662.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: gbm:Gbem_3803 transglutaminase domain protein YP_003023663.1 KEGG: gbm:Gbem_3804 hypothetical protein YP_003023664.1 KEGG: gbm:Gbem_3805 cobalt ABC transporter ATPase subunit; TIGRFAM: cobalt ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_003023665.1 TIGRFAM: cobalt ABC transporter inner membrane protein CbiQ; PFAM: cobalt transporter; KEGG: gbm:Gbem_3806 cobalt ABC transporter inner membrane protein CbiQ YP_003023666.1 KEGG: gbm:Gbem_3807 hypothetical protein YP_003023667.1 catalyzes the ATP-dependent transport of cobalt YP_003023668.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003023669.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_003023670.1 TIGRFAM: alpha-ribazole phosphatase; PFAM: phosphoglycerate mutase; KEGG: gbm:Gbem_3811 alpha-ribazole phosphatase YP_003023671.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: gbm:Gbem_3812 cobalamin 5'-phosphate synthase YP_003023672.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_003023673.1 PFAM: cobalbumin biosynthesis protein; KEGG: gbm:Gbem_3814 cobalbumin biosynthesis protein YP_003023674.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_003023675.1 KEGG: gbm:Gbem_3816 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent hydrolase HDOD; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003023676.1 KEGG: gbm:Gbem_3817 hypothetical protein YP_003023677.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_3818 integral membrane sensor signal transduction histidine kinase YP_003023678.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_3819 Fis family transcriptional regulator YP_003023679.1 KEGG: gbm:Gbem_3820 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003023680.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_003023681.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: gbm:Gbem_3822 flagellar biosynthetic protein FliR YP_003023682.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: gbm:Gbem_3823 flagellar biosynthetic protein FliQ YP_003023683.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_003023684.1 KEGG: gbm:Gbem_3825 flagellar biogenesis protein YP_003023685.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: gbm:Gbem_3826 flagellar motor switch protein FliN YP_003023686.1 TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: gbm:Gbem_3827 flagellar motor switch protein FliM YP_003023687.1 PFAM: flagellar basal body-associated protein FliL; KEGG: gbm:Gbem_3828 flagellar basal body-associated protein FliL YP_003023688.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: gbm:Gbem_3829 protein of unknown function DUF1078 domain protein YP_003023689.1 TIGRFAM: flagellar operon protein; KEGG: gbm:Gbem_3830 flagellar operon protein YP_003023690.1 PFAM: flagellar hook capping protein; KEGG: gbm:Gbem_3831 flagellar hook capping protein YP_003023691.1 PFAM: flagellar hook-length control protein; KEGG: gbm:Gbem_3832 flagellar hook-length control protein YP_003023692.1 KEGG: gbm:Gbem_3833 hypothetical protein YP_003023693.1 TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: gbm:Gbem_3834 flagellar export protein FliJ YP_003023694.1 KEGG: gbm:Gbem_3835 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; SMART: ATPase AAA YP_003023695.1 PFAM: flagellar assembly protein FliH; KEGG: gbm:Gbem_3836 flagellar assembly protein FliH YP_003023696.1 TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: gbm:Gbem_3837 flagellar motor switch protein FliG YP_003023697.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: flagellar M-ring domain protein; secretory protein YscJ/FliF family protein; KEGG: gbm:Gbem_3838 flagellar M-ring protein FliF YP_003023698.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: gbm:Gbem_3839 flagellar hook-basal body complex subunit FliE YP_003023699.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: gbm:Gbem_3840 flagellar basal-body rod protein FlgC YP_003023700.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: gbm:Gbem_3841 flagellar basal-body rod protein FlgB YP_003023701.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3842 hypothetical protein YP_003023702.1 KEGG: gbm:Gbem_3843 chemotaxis protein CheC YP_003023703.1 KEGG: gbm:Gbem_3844 inhibitor of MCP methylation CheC-like protein YP_003023704.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_3845 response regulator receiver protein YP_003023705.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_3846 PAS/PAC sensor signal transduction histidine kinase YP_003023706.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: gbm:Gbem_3847 rhodanese domain protein YP_003023707.1 PFAM: beta-lactamase; KEGG: gbm:Gbem_3848 beta-lactamase YP_003023708.1 KEGG: gbm:Gbem_3849 hypothetical protein YP_003023709.1 TIGRFAM: hypothetical protein; KEGG: gbm:Gbem_3850 hypothetical protein YP_003023710.1 PFAM: acriflavin resistance protein; KEGG: gbm:Gbem_3851 acriflavin resistance protein YP_003023711.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gbm:Gbem_3852 efflux transporter RND family, MFP subunit YP_003023712.1 PFAM: outer membrane efflux protein; KEGG: gbm:Gbem_3853 outer membrane efflux protein YP_003023713.1 PFAM: protein of unknown function DUF815; KEGG: gbm:Gbem_3854 protein of unknown function DUF815 YP_003023714.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: gbm:Gbem_3855 methyltransferase type 12 YP_003023715.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: scl:sce0315 hypothetical protein YP_003023716.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: gbm:Gbem_3856 triphosphoribosyl-dephospho-CoA protein YP_003023717.1 PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; KEGG: gbm:Gbem_3857 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YP_003023718.1 KEGG: gbm:Gbem_3858 citrate lyase subunit alpha; TIGRFAM: citrate lyase subunit alpha; PFAM: citrate lyase subunit alpha YP_003023719.1 PFAM: HpcH/HpaI aldolase; KEGG: gbm:Gbem_3859 HpcH/HpaI aldolase YP_003023720.1 PFAM: protein of unknown function DUF296; KEGG: gbm:Gbem_3860 protein of unknown function DUF296 YP_003023721.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate YP_003023722.1 KEGG: gbm:Gbem_3862 citrate lyase ligase; TIGRFAM: citrate lyase ligase; cytidyltransferase-related domain protein; PFAM: citrate lyase ligase domain protein; cytidylyltransferase; SMART: citrate lyase ligase domain protein YP_003023723.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_3863 glycosyl transferase family 2 YP_003023724.1 PFAM: lipid A biosynthesis domain protein; KEGG: gbm:Gbem_3864 lipid A biosynthesis domain protein YP_003023725.1 PFAM: glycosyl transferase family 39; KEGG: gbm:Gbem_3865 glycosyl transferase family 39 YP_003023726.1 KEGG: gbm:Gbem_3866 hypothetical protein YP_003023727.1 KEGG: gbm:Gbem_3867 peptidase C1A papain YP_003023728.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pfo:Pfl01_5698 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003023729.1 PFAM: carbonic anhydrase; KEGG: gbm:Gbem_3868 carbonic anhydrase YP_003023730.1 KEGG: ppd:Ppro_2865 hypothetical protein YP_003023731.1 KEGG: gbm:Gbem_3869 hypothetical protein YP_003023732.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_3870 hemerythrin-like metal-binding protein YP_003023733.1 PFAM: PEBP family protein; KEGG: gbm:Gbem_3871 PEBP family protein YP_003023734.1 KEGG: gbm:Gbem_3872 hypothetical protein YP_003023735.1 PFAM: protein of unknown function DUF326; KEGG: gbm:Gbem_3873 protein of unknown function DUF326 YP_003023736.1 PFAM: protein of unknown function DUF362; KEGG: gbm:Gbem_3874 protein of unknown function DUF362 YP_003023737.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3875 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003023738.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3876 methyl-accepting chemotaxis sensory transducer YP_003023739.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gbm:Gbem_3877 iron-containing alcohol dehydrogenase YP_003023740.1 KEGG: gbm:Gbem_3878 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003023741.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: gbm:Gbem_3879 methyltransferase type 12 YP_003023742.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3880 methyl-accepting chemotaxis sensory transducer YP_003023743.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: gbm:Gbem_3881 hydrogenase maturation protease YP_003023744.1 KEGG: gbm:Gbem_3882 hypothetical protein YP_003023745.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3883 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003023746.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: gbm:Gbem_3884 nickel-dependent hydrogenase large subunit YP_003023747.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: gbm:Gbem_3885 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003023748.1 KEGG: gbm:Gbem_3886 hypothetical protein YP_003023749.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_3887 chemotaxis protein CheW YP_003023750.1 PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: gbm:Gbem_3888 hypothetical protein YP_003023751.1 PFAM: protein of unknown function DUF1555; KEGG: gbm:Gbem_3889 hypothetical protein YP_003023752.1 KEGG: gbm:Gbem_3890 hypothetical protein YP_003023753.1 KEGG: gbm:Gbem_3891 hypothetical protein YP_003023754.1 KEGG: gbm:Gbem_3894 hypothetical protein YP_003023755.1 PFAM: regulatory protein TetR; KEGG: gbm:Gbem_3896 TetR family transcriptional regulator YP_003023756.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: gbm:Gbem_3897 acetyl-CoA hydrolase/transferase YP_003023757.1 PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_3898 thioesterase superfamily protein YP_003023758.1 KEGG: gbm:Gbem_3899 hypothetical protein YP_003023759.1 KEGG: gbm:Gbem_3900 hypothetical protein YP_003023760.1 KEGG: gbm:Gbem_3901 nitric oxide reductase YP_003023761.1 KEGG: gbm:Gbem_3902 spore maturation protein B YP_003023762.1 PFAM: nucleoside recognition domain protein; KEGG: gbm:Gbem_3903 nucleoside recognition domain protein YP_003023763.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: gbm:Gbem_3904 peptidase U61 LD-carboxypeptidase A YP_003023764.1 PFAM: citrate synthase; KEGG: gbm:Gbem_3905 citrate synthase YP_003023765.1 KEGG: gbm:Gbem_3906 hypothetical protein YP_003023766.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: gbm:Gbem_3907 channel protein, hemolysin III family YP_003023767.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_3909 hypothetical protein YP_003023768.1 PFAM: fatty acid hydroxylase; KEGG: gbm:Gbem_3910 fatty acid hydroxylase YP_003023769.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: gbm:Gbem_3911 heat shock protein DnaJ domain protein YP_003023770.1 KEGG: gbm:Gbem_3912 hypothetical protein YP_003023771.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gbm:Gbem_3913 proton-translocating NADH-quinone oxidoreductase, chain N YP_003023772.1 KEGG: gbm:Gbem_3914 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003023773.1 KEGG: gbm:Gbem_3915 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein YP_003023774.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: gbm:Gbem_3916 NADH-ubiquinone oxidoreductase chain 4L YP_003023775.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: gbm:Gbem_3917 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003023776.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3918 NADH-quinone oxidoreductase, chain I YP_003023777.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: gbm:Gbem_3919 respiratory-chain NADH dehydrogenase subunit 1 YP_003023778.1 PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_3920 molybdopterin oxidoreductase YP_003023779.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3921 respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_003023780.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: gbm:Gbem_3922 NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_003023781.1 KEGG: gbm:Gbem_3923 NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa YP_003023782.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: gbm:Gbem_3924 NADH (or F420H2) dehydrogenase, subunit C YP_003023783.1 KEGG: gbm:Gbem_3925 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003023784.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: gbm:Gbem_3926 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_003023785.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_003023786.1 PFAM: general secretory system II protein E domain protein; KEGG: gbm:Gbem_3928 general secretory system II protein E domain protein YP_003023787.1 KEGG: gbm:Gbem_3929 hypothetical protein YP_003023788.1 PFAM: ATP synthase I; KEGG: gbm:Gbem_3930 hypothetical protein YP_003023789.1 TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: gbm:Gbem_3931 ATP synthase F0 subunit alpha YP_003023790.1 TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: gbm:Gbem_3932 ATP synthase F0 C subunit YP_003023791.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: gbm:Gbem_3933 PHP domain protein YP_003023792.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_3934 protein of unknown function DUF6 transmembrane YP_003023793.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_003023794.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_3936 type IV pilus assembly PilZ YP_003023795.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: gbm:Gbem_3937 hydrolase, TatD family YP_003023796.1 PFAM: rubrerythrin; KEGG: gbm:Gbem_3938 rubrerythrin YP_003023797.1 PFAM: lytic transglycosylase catalytic; KEGG: gbm:Gbem_3939 lytic transglycosylase catalytic protein YP_003023798.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_3940 Fis family transcriptional regulator YP_003023799.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_3941 chemotaxis protein CheW YP_003023800.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: gbm:Gbem_3942 chemotaxis protein CheA YP_003023801.1 KEGG: gbm:Gbem_3943 chemotaxis protein CheR; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003023802.1 PFAM: metal-dependent hydrolase HDOD; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gbm:Gbem_3944 metal dependent phosphohydrolase YP_003023803.1 PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_3945 response regulator receiver modulated CheB methylesterase YP_003023804.1 KEGG: gbm:Gbem_3946 hypothetical protein YP_003023806.1 KEGG: gbm:Gbem_3947 hypothetical protein YP_003023807.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: gbm:Gbem_3948 MATE efflux family protein YP_003023808.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit epsilon is part of the catalytic core of the ATP synthase complex YP_003023809.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_003023810.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_003023811.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_003023812.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex YP_003023813.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: gbm:Gbem_3954 H+transporting two-sector ATPase B/B' subunit YP_003023814.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: gbm:Gbem_3955 H+transporting two-sector ATPase B/B' subunit YP_003023815.1 KEGG: gbm:Gbem_3956 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003023816.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: gbm:Gbem_3957 cobyrinic acid ac-diamide synthase YP_003023817.1 KEGG: gbm:Gbem_3958 cytochrome C family protein YP_003023818.1 KEGG: gbm:Gbem_3959 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; PAS fold domain protein; SMART: histidine kinase HAMP region domain protein; PAS domain containing protein YP_003023819.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: gbm:Gbem_3960 RNP-1 like RNA-binding protein YP_003023820.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_003023821.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: gme:Gmet_3429 IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase YP_003023822.1 KEGG: gbm:Gbem_3962 GTPase-like protein YP_003023823.1 PFAM: Roadblock/LC7 family protein; KEGG: gbm:Gbem_3963 roadblock/LC7 family protein YP_003023824.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gbm:Gbem_3964 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_003023825.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: gbm:Gbem_3965 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_003023826.1 KEGG: gbm:Gbem_3966 hypothetical protein YP_003023827.1 PFAM: cytochrome C assembly protein; KEGG: gbm:Gbem_3967 cytochrome C assembly protein YP_003023828.1 KEGG: gbm:Gbem_3968 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003023829.1 PFAM: amino acid-binding ACT domain protein; KEGG: gbm:Gbem_3969 amino acid-binding ACT domain protein YP_003023830.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: gbm:Gbem_3970 cell divisionFtsK/SpoIIIE YP_003023831.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: gbm:Gbem_3971 beta-lactamase YP_003023832.1 KEGG: gbm:Gbem_3972 hypothetical protein YP_003023833.1 KEGG: gbm:Gbem_3973 hypothetical protein YP_003023834.1 KEGG: gbm:Gbem_3974 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003023835.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: glo:Glov_2840 filamentation induced by cAMP protein Fic YP_003023836.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: gbm:Gbem_3975 single-strand binding protein YP_003023837.1 KEGG: ppg:PputGB1_0515 integrase family protein YP_003023838.1 KEGG: ppg:PputGB1_0516 integrase family protein YP_003023839.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gur:Gura_2874 IstB ATP binding domain-containing protein YP_003023840.1 PFAM: integrase; KEGG: gur:Gura_2875 integrase catalytic subunit YP_003023841.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: gur:Gura_3199 addiction module antitoxin YP_003023842.1 KEGG: gur:Gura_3200 hypothetical protein YP_003023843.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gur:Gura_3309 regulatory protein, ArsR YP_003023844.1 PFAM: purine or other phosphorylase family 1; KEGG: mno:Mnod_2731 purine or other phosphorylase family 1 YP_003023846.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gur:Gura_3310 methyltransferase type 11 YP_003023847.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: ppd:Ppro_1936 methyltransferase type 11 YP_003023848.1 PFAM: protein of unknown function CGGC region; KEGG: gme:Gmet_3511 hypothetical protein YP_003023849.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: gbm:Gbem_3911 heat shock protein DnaJ domain protein YP_003023850.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gur:Gura_3323 molybdenum ABC transporter periplasmic molybdate-binding protein YP_003023851.1 SMART: ankyrin; KEGG: gbm:Gbem_3036 ankyrin YP_003023852.1 KEGG: gbm:Gbem_3037 hypothetical protein YP_003023853.1 KEGG: gbm:Gbem_3985 hypothetical protein YP_003023854.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding LysM; sporulation domain protein; KEGG: gbm:Gbem_3988 ErfK/YbiS/YcfS/YnhG family protein YP_003023855.1 KEGG: gbm:Gbem_3989 lipoprotein YP_003023856.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: gbm:Gbem_3990 ErfK/YbiS/YcfS/YnhG family protein YP_003023857.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; KEGG: gbm:Gbem_3991 GAF sensor signal transduction histidine kinase YP_003023858.1 PFAM: flagellin domain protein; von Willebrand factor A; SMART: von Willebrand factor A; KEGG: bra:BRADO7005 hypothetical protein YP_003023859.1 KEGG: gbm:Gbem_3992 hypothetical protein YP_003023860.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: gbm:Gbem_3993 MATE efflux family protein YP_003023861.1 KEGG: gbm:Gbem_3994 hypothetical protein YP_003023863.1 KEGG: gbm:Gbem_3995 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_003023864.1 KEGG: gbm:Gbem_3996 hypothetical protein YP_003023865.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: gbm:Gbem_3997 PBS lyase heat domain protein repeat-containing protein YP_003023866.1 KEGG: gbm:Gbem_3998 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003023867.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: gbm:Gbem_3999 PBS lyase heat domain protein repeat-containing protein YP_003023868.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_003023869.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: gbm:Gbem_4001 transcriptional regulator, TraR/DksA family YP_003023870.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: gbm:Gbem_4002 GAF sensor signal transduction histidine kinase YP_003023871.1 KEGG: gbm:Gbem_4003 hypothetical protein YP_003023872.1 PFAM: multicopper oxidase type 2; KEGG: gbm:Gbem_4007 multicopper oxidase type 2 YP_003023873.1 KEGG: gbm:Gbem_4009 hemerythrin-like metal-binding protein YP_003023874.1 PFAM: transposase IS4 family protein; KEGG: ppd:Ppro_1770 transposase, IS4 family protein YP_003023875.1 TIGRFAM: hemerythrin-like metal-binding protein; KEGG: gbm:Gbem_4009 hemerythrin-like metal-binding protein YP_003023876.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: gbm:Gbem_4010 redoxin domain protein YP_003023877.1 KEGG: gbm:Gbem_4012 hypothetical protein YP_003023878.1 KEGG: gbm:Gbem_4013 hypothetical protein YP_003023879.1 KEGG: gbm:Gbem_4014 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_003023880.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: nmu:Nmul_A1940 glycoside hydrolase family protein YP_003023881.1 KEGG: gbm:Gbem_4017 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_003023882.1 PFAM: peptidase M24; KEGG: gbm:Gbem_4018 peptidase M24 YP_003023883.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: gbm:Gbem_4019 galactokinase YP_003023884.1 PFAM: dTDP-4-dehydrorhamnose reductase; glycoside hydrolase family 1; NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_4020 dTDP-4-dehydrorhamnose reductase YP_003023885.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_4021 glycosyl transferase group 1 YP_003023886.1 KEGG: gbm:Gbem_4022 hypothetical protein YP_003023887.1 KEGG: gbm:Gbem_4023 hypothetical protein YP_003023888.1 PFAM: cytochrome b/b6 domain; KEGG: gbm:Gbem_4024 cytochrome b/b6 domain protein YP_003023889.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: gbm:Gbem_4025 Rieske (2Fe-2S) domain protein YP_003023890.1 KEGG: gbm:Gbem_4026 hypothetical protein YP_003023891.1 KEGG: gbm:Gbem_4027 hypothetical protein YP_003023892.1 KEGG: gbm:Gbem_4028 hypothetical protein YP_003023893.1 KEGG: gbm:Gbem_4029 hypothetical protein YP_003023894.1 KEGG: gbm:Gbem_4030 hypothetical protein YP_003023895.1 PFAM: phosphate-selective porin O and P; KEGG: gbm:Gbem_4031 phosphate-selective porin O and P YP_003023896.1 SMART: rhodanese; KEGG: gur:Gura_0450 rhodanese YP_003023897.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_4033 LysR family transcriptional regulator YP_003023898.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_4034 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_003023899.1 PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_4035 major facilitator superfamily MFS_1 YP_003023900.1 KEGG: gbm:Gbem_4036 flavocytochrome C; TIGRFAM: flavocytochrome C; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; HI0933 family protein YP_003023901.1 PFAM: phosphate-selective porin O and P; KEGG: gbm:Gbem_4037 phosphate-selective porin O and P YP_003023902.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_4038 Fis family transcriptional regulator YP_003023903.1 PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; SMART: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_4039 histidine kinase YP_003023904.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_4040 hypothetical protein YP_003023905.1 KEGG: gbm:Gbem_4041 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein YP_003023906.1 PFAM: DEAD_2 domain protein; SMART: helicase c2; Helicase-like, DEXD box c2 type; KEGG: gbm:Gbem_4042 DEAD_2 domain protein YP_003023907.1 KEGG: gbm:Gbem_4043 cytochrome C3 YP_003023908.1 KEGG: gbm:Gbem_4044 hypothetical protein YP_003023909.1 KEGG: gbm:Gbem_4045 hypothetical protein YP_003023910.1 PFAM: radical SAM protein; KEGG: gbm:Gbem_4047 radical SAM protein YP_003023911.1 KEGG: gbm:Gbem_4048 cobyrinic acid a,c-diamide synthase family protein YP_003023912.1 KEGG: gbm:Gbem_4049 hypothetical protein YP_003023913.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_4050 transcriptional regulator, XRE family YP_003023914.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: gbm:Gbem_4051 intracellular protease PfpI family YP_003023915.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis YP_003023916.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_003023917.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_003023918.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gbm:Gbem_4055 diaminopimelate decarboxylase YP_003023919.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: gbm:Gbem_4056 methyltransferase GidB YP_003023920.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003023921.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_003023922.1 PFAM: hypothetical protein; KEGG: gbm:Gbem_4059 hypothetical protein YP_003023923.1 PFAM: protein of unknown function DUF37; KEGG: gur:Gura_4430 hypothetical protein YP_003023924.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_003023925.1 in Escherichia coli transcription of this gene is enhanced by polyamines