-- dump date 20140619_104053 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 233412000001 SEQ_END SEQ_END NC_002940.2 1698955 1698955 DR NC_002940.2; contig end 1698955..1698955 Haemophilus ducreyi 35000HP NP_872636.1 CDS gidA NC_002940.2 296 2188 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 296..2188 Haemophilus ducreyi 35000HP 1490023 NP_872637.1 CDS gidB NC_002940.2 2293 2904 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 2293..2904 Haemophilus ducreyi 35000HP 1490024 NP_872638.1 CDS HD0003 NC_002940.2 3220 3603 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 3220..3603 Haemophilus ducreyi 35000HP 1490025 NP_872639.1 CDS atpB NC_002940.2 3629 4417 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 3629..4417 Haemophilus ducreyi 35000HP 1490026 NP_872640.1 CDS atpE NC_002940.2 4538 4792 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 4538..4792 Haemophilus ducreyi 35000HP 1490027 NP_872641.1 CDS atpF NC_002940.2 4846 5316 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 4846..5316 Haemophilus ducreyi 35000HP 1490028 NP_872642.1 CDS atpH NC_002940.2 5330 5863 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 5330..5863 Haemophilus ducreyi 35000HP 1490029 NP_872643.1 CDS atpA NC_002940.2 5876 7417 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 5876..7417 Haemophilus ducreyi 35000HP 1490030 NP_872644.1 CDS atpG NC_002940.2 7441 8307 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 7441..8307 Haemophilus ducreyi 35000HP 1490031 NP_872645.1 CDS atpD NC_002940.2 8323 9696 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 8323..9696 Haemophilus ducreyi 35000HP 1490032 NP_872646.1 CDS atpC NC_002940.2 9736 10155 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 9736..10155 Haemophilus ducreyi 35000HP 1490033 NP_872647.1 CDS xerD NC_002940.2 16486 17379 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 16486..17379 Haemophilus ducreyi 35000HP 1490043 NP_872648.1 CDS mesJ NC_002940.2 17376 18662 R cell-cycle protein MesJ complement(17376..18662) Haemophilus ducreyi 35000HP 1490044 NP_872649.1 CDS tldD NC_002940.2 18773 20233 D TldD protein 18773..20233 Haemophilus ducreyi 35000HP 1490045 NP_872650.1 CDS prmA NC_002940.2 20276 21157 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 20276..21157 Haemophilus ducreyi 35000HP 1490046 NP_872651.1 CDS HD0022 NC_002940.2 23154 23306 R hypothetical protein complement(23154..23306) Haemophilus ducreyi 35000HP 1490049 NP_872652.1 CDS HD0023 NC_002940.2 23295 24359 D transport system permease 23295..24359 Haemophilus ducreyi 35000HP 1490050 NP_872653.1 CDS crcB NC_002940.2 24359 24733 D CrcB protein 24359..24733 Haemophilus ducreyi 35000HP 1490051 NP_872654.1 CDS dcuB1 NC_002940.2 24825 26168 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(24825..26168) Haemophilus ducreyi 35000HP 1490052 NP_872655.1 CDS dapF NC_002940.2 26348 27172 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 26348..27172 Haemophilus ducreyi 35000HP 1490053 NP_872656.1 CDS genX NC_002940.2 27251 28234 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(27251..28234) Haemophilus ducreyi 35000HP 1490054 NP_872657.1 CDS frdA NC_002940.2 28584 30383 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 28584..30383 Haemophilus ducreyi 35000HP 1490055 NP_872658.1 CDS frdB NC_002940.2 30396 31130 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 30396..31130 Haemophilus ducreyi 35000HP 1490056 NP_872659.1 CDS frdC NC_002940.2 31139 31525 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 31139..31525 Haemophilus ducreyi 35000HP 1490057 NP_872660.1 CDS frdD NC_002940.2 31535 31879 D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 31535..31879 Haemophilus ducreyi 35000HP 1490058 NP_872661.1 CDS HD0035 NC_002940.2 32032 32130 D hypothetical protein 32032..32130 Haemophilus ducreyi 35000HP 1490059 NP_872662.1 CDS lysA NC_002940.2 32231 33484 D diaminopimelate decarboxylase 32231..33484 Haemophilus ducreyi 35000HP 1490060 NP_872663.1 CDS chuW NC_002940.2 33596 35410 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 33596..35410 Haemophilus ducreyi 35000HP 1490061 NP_872664.1 CDS HD0038 NC_002940.2 35412 36011 D hypothetical protein 35412..36011 Haemophilus ducreyi 35000HP 1490062 NP_872665.1 CDS trmE NC_002940.2 36101 37459 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(36101..37459) Haemophilus ducreyi 35000HP 1490063 NP_872666.1 CDS yidC NC_002940.2 37610 39220 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(37610..39220) Haemophilus ducreyi 35000HP 1490064 NP_872667.1 CDS HD0041 NC_002940.2 39217 39312 R hypothetical protein complement(39217..39312) Haemophilus ducreyi 35000HP 1490065 NP_872668.1 CDS HD0042 NC_002940.2 39364 39795 R hypothetical protein complement(39364..39795) Haemophilus ducreyi 35000HP 1490066 NP_872669.1 CDS HD0043 NC_002940.2 39765 39884 D hypothetical protein 39765..39884 Haemophilus ducreyi 35000HP 1490067 NP_872670.1 CDS HD0044 NC_002940.2 39951 40070 R hypothetical protein complement(39951..40070) Haemophilus ducreyi 35000HP 1490068 NP_872671.1 CDS momp NC_002940.2 40269 41480 D major outer membrane protein 40269..41480 Haemophilus ducreyi 35000HP 1490069 NP_872672.1 CDS ompA2 NC_002940.2 41761 42984 D major outer membrane protein, OmpA2 41761..42984 Haemophilus ducreyi 35000HP 1490070 NP_872673.1 CDS HD0047 NC_002940.2 43024 43116 D hypothetical protein 43024..43116 Haemophilus ducreyi 35000HP 1490071 NP_872674.1 CDS HD0048 NC_002940.2 43035 43130 D hypothetical protein 43035..43130 Haemophilus ducreyi 35000HP 1490072 NP_872675.1 CDS plsC NC_002940.2 43187 43912 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 43187..43912 Haemophilus ducreyi 35000HP 1490073 NP_872676.1 CDS sufI NC_002940.2 43919 45337 D SufI protein 43919..45337 Haemophilus ducreyi 35000HP 1490074 NP_872677.1 CDS accA NC_002940.2 45469 46422 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 45469..46422 Haemophilus ducreyi 35000HP 1490075 NP_872678.1 CDS HD0052 NC_002940.2 46419 46514 R hypothetical protein complement(46419..46514) Haemophilus ducreyi 35000HP 1490076 NP_872679.1 CDS HD0053 NC_002940.2 46609 47808 R hypothetical protein complement(46609..47808) Haemophilus ducreyi 35000HP 1490077 NP_872680.1 CDS tuf NC_002940.2 47920 49104 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(47920..49104) Haemophilus ducreyi 35000HP 1490078 NP_872681.1 CDS HD0055 NC_002940.2 49672 49767 D hypothetical protein 49672..49767 Haemophilus ducreyi 35000HP 1490082 NP_872682.1 CDS coaA NC_002940.2 49866 50816 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 49866..50816 Haemophilus ducreyi 35000HP 1490083 NP_872683.1 CDS dsbE1 NC_002940.2 50893 51432 D thiol:disulfide interchange protein DsbE 50893..51432 Haemophilus ducreyi 35000HP 1490084 NP_872684.1 CDS mogA NC_002940.2 52812 53396 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 52812..53396 Haemophilus ducreyi 35000HP 1490086 NP_872685.1 CDS glnB NC_002940.2 53408 53746 D nitrogen regulatory protein P-II 53408..53746 Haemophilus ducreyi 35000HP 1490087 NP_872686.1 CDS lspA NC_002940.2 53810 54295 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 53810..54295 Haemophilus ducreyi 35000HP 1490088 NP_872687.1 CDS ispH NC_002940.2 54296 55240 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 54296..55240 Haemophilus ducreyi 35000HP 1490089 NP_872688.1 CDS HD0065 NC_002940.2 55240 55488 D hypothetical protein 55240..55488 Haemophilus ducreyi 35000HP 1490090 NP_872689.1 CDS HD0066 NC_002940.2 55564 56937 R hypothetical protein complement(55564..56937) Haemophilus ducreyi 35000HP 1490091 NP_872690.1 CDS ftpA NC_002940.2 57151 57723 R fine tangled pili major subunit complement(57151..57723) Haemophilus ducreyi 35000HP 1490092 NP_872691.1 CDS HD0069 NC_002940.2 57947 60142 R hypothetical protein complement(57947..60142) Haemophilus ducreyi 35000HP 1490093 NP_872692.1 CDS HD0070 NC_002940.2 60447 60557 R hypothetical protein complement(60447..60557) Haemophilus ducreyi 35000HP 1490094 NP_872693.1 CDS napF NC_002940.2 60848 61375 D ferredoxin-type protein NapF 60848..61375 Haemophilus ducreyi 35000HP 1490095 NP_872694.1 CDS napD NC_002940.2 61417 61680 D periplasmic nitrate reductase subunit NapD 61417..61680 Haemophilus ducreyi 35000HP 1490096 NP_872695.1 CDS napA NC_002940.2 61718 64201 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 61718..64201 Haemophilus ducreyi 35000HP 1490097 NP_872696.1 CDS napG NC_002940.2 64322 65221 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 64322..65221 Haemophilus ducreyi 35000HP 1490098 NP_872697.1 CDS napH NC_002940.2 65221 66114 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 65221..66114 Haemophilus ducreyi 35000HP 1490099 NP_872698.1 CDS napB NC_002940.2 66189 66629 D cytochrome c-type protein 66189..66629 Haemophilus ducreyi 35000HP 1490100 NP_872699.1 CDS napC NC_002940.2 66641 67258 D cytochrome c-type protein 66641..67258 Haemophilus ducreyi 35000HP 1490101 NP_872700.1 CDS murB NC_002940.2 67395 68429 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 67395..68429 Haemophilus ducreyi 35000HP 1490102 NP_872701.1 CDS birA NC_002940.2 68356 69192 D bifunctional; biotin--(acetyl-CoA-carboxylase) synthetase; biotin operon represssor 68356..69192 Haemophilus ducreyi 35000HP 1490103 NP_872702.1 CDS HD0083 NC_002940.2 69227 69352 D hypothetical protein 69227..69352 Haemophilus ducreyi 35000HP 1490104 NP_872703.1 CDS lldD NC_002940.2 69429 70574 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 69429..70574 Haemophilus ducreyi 35000HP 1490105 NP_872704.1 CDS HD0085 NC_002940.2 70943 71167 R hypothetical protein complement(70943..71167) Haemophilus ducreyi 35000HP 1490106 NP_872705.1 CDS rpoH NC_002940.2 71207 72166 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 71207..72166 Haemophilus ducreyi 35000HP 1490107 NP_872706.1 CDS HD0087 NC_002940.2 72188 72292 D hypothetical protein 72188..72292 Haemophilus ducreyi 35000HP 1490108 NP_872707.1 CDS HD0089 NC_002940.2 72533 73234 R transcriptional regulator complement(72533..73234) Haemophilus ducreyi 35000HP 1490109 NP_872708.1 CDS ner NC_002940.2 73434 73694 D DNA-binding protein 73434..73694 Haemophilus ducreyi 35000HP 1490110 NP_872709.1 CDS HD0095 NC_002940.2 75767 76684 D Mu phage DNA transposition protein B 75767..76684 Haemophilus ducreyi 35000HP 1490112 NP_872710.1 CDS HD0096 NC_002940.2 76684 76917 D hypothetical protein 76684..76917 Haemophilus ducreyi 35000HP 1490113 NP_872711.1 CDS HD0097 NC_002940.2 76930 77547 D hypothetical protein 76930..77547 Haemophilus ducreyi 35000HP 1490114 NP_872712.1 CDS HD0098 NC_002940.2 77540 77776 D hypothetical protein 77540..77776 Haemophilus ducreyi 35000HP 1490115 NP_872713.1 CDS HD0099 NC_002940.2 77879 77974 D hypothetical protein 77879..77974 Haemophilus ducreyi 35000HP 1490116 NP_872714.1 CDS HD0100 NC_002940.2 78034 78168 D hypothetical protein 78034..78168 Haemophilus ducreyi 35000HP 1490117 NP_872715.1 CDS HD0101 NC_002940.2 78171 78389 D hypothetical protein 78171..78389 Haemophilus ducreyi 35000HP 1490118 NP_872716.1 CDS HD0102 NC_002940.2 78392 78595 D hypothetical protein 78392..78595 Haemophilus ducreyi 35000HP 1490119 NP_872717.1 CDS HD0103 NC_002940.2 78592 78927 D hypothetical protein 78592..78927 Haemophilus ducreyi 35000HP 1490120 NP_872718.1 CDS HD0104 NC_002940.2 78936 79229 D hypothetical protein 78936..79229 Haemophilus ducreyi 35000HP 1490121 NP_872719.1 CDS HD0105 NC_002940.2 79231 79968 D hypothetical protein 79231..79968 Haemophilus ducreyi 35000HP 1490122 NP_872720.1 CDS HD0106 NC_002940.2 79968 80243 D hypothetical protein 79968..80243 Haemophilus ducreyi 35000HP 1490123 NP_872721.1 CDS HD0107 NC_002940.2 80321 80791 D hypothetical protein 80321..80791 Haemophilus ducreyi 35000HP 1490124 NP_872722.1 CDS HD0108 NC_002940.2 80773 81141 D hypothetical protein 80773..81141 Haemophilus ducreyi 35000HP 1490125 NP_872723.1 CDS HD0109 NC_002940.2 81037 81471 R hypothetical protein complement(81037..81471) Haemophilus ducreyi 35000HP 1490126 NP_872724.1 CDS HD0110 NC_002940.2 81119 81583 D Mu-like phage E16 protein 81119..81583 Haemophilus ducreyi 35000HP 1490127 NP_872725.1 CDS HD0111 NC_002940.2 81559 81915 D Mu-like phage C protein, positive regulator of late transcription 81559..81915 Haemophilus ducreyi 35000HP 1490128 NP_872726.1 CDS HD0112 NC_002940.2 82023 82544 D N-acetylmuramoyl-L-alanine amidase 82023..82544 Haemophilus ducreyi 35000HP 1490129 NP_872727.1 CDS HD0113 NC_002940.2 82549 82767 D hypothetical protein 82549..82767 Haemophilus ducreyi 35000HP 1490130 NP_872728.1 CDS HD0114 NC_002940.2 82777 83007 D hypothetical protein 82777..83007 Haemophilus ducreyi 35000HP 1490131 NP_872729.1 CDS HD0115 NC_002940.2 83010 83294 D hypothetical protein 83010..83294 Haemophilus ducreyi 35000HP 1490132 NP_872730.1 CDS HD0119 NC_002940.2 83355 84017 R hypothetical protein complement(83355..84017) Haemophilus ducreyi 35000HP 1490133 NP_872731.1 CDS HD0117 NC_002940.2 83414 83644 D hypothetical protein 83414..83644 Haemophilus ducreyi 35000HP 1490134 NP_872732.1 CDS HD0118 NC_002940.2 83641 83976 D Mu-like phage gp25 83641..83976 Haemophilus ducreyi 35000HP 1490135 NP_872733.1 CDS HD0120 NC_002940.2 84064 84279 D Mu-like phage gp26 84064..84279 Haemophilus ducreyi 35000HP 1490136 NP_872734.1 CDS HD0121 NC_002940.2 84302 84871 D Mu-like phage gp27 84302..84871 Haemophilus ducreyi 35000HP 1490137 NP_872735.1 CDS HD0123 NC_002940.2 84871 86430 D Mu-like phage gp28 84871..86430 Haemophilus ducreyi 35000HP 1490138 NP_872736.1 CDS HD0124 NC_002940.2 86434 88038 D Mu-like phage gp29 86434..88038 Haemophilus ducreyi 35000HP 1490139 NP_872737.1 CDS HD0127 NC_002940.2 89500 89943 D Mu-like phage G protein 1 89500..89943 Haemophilus ducreyi 35000HP 1490141 NP_872738.1 CDS HD0128 NC_002940.2 89897 89989 R hypothetical protein complement(89897..89989) Haemophilus ducreyi 35000HP 1490142 NP_872739.1 CDS HD0132 NC_002940.2 91186 92097 D hypothetical protein 91186..92097 Haemophilus ducreyi 35000HP 1490144 NP_872740.1 CDS HD0133 NC_002940.2 92172 92552 D hypothetical protein 92172..92552 Haemophilus ducreyi 35000HP 1490145 NP_872741.1 CDS HD0134 NC_002940.2 92552 92971 D Mu-like prophage protein GP36 92552..92971 Haemophilus ducreyi 35000HP 1490146 NP_872742.1 CDS HD0135 NC_002940.2 92971 93624 D hypothetical protein 92971..93624 Haemophilus ducreyi 35000HP 1490147 NP_872743.1 CDS HD0136 NC_002940.2 93614 94354 D hypothetical protein 93614..94354 Haemophilus ducreyi 35000HP 1490148 NP_872744.1 CDS HD0137 NC_002940.2 94400 94828 D hypothetical protein 94400..94828 Haemophilus ducreyi 35000HP 1490149 NP_872745.1 CDS HD0138 NC_002940.2 94837 95016 D hypothetical protein 94837..95016 Haemophilus ducreyi 35000HP 1490150 NP_872746.1 CDS HD0140 NC_002940.2 95053 97293 D tail length tape measure protein 95053..97293 Haemophilus ducreyi 35000HP 1490151 NP_872747.1 CDS HD0141 NC_002940.2 97275 97457 D hypothetical protein 97275..97457 Haemophilus ducreyi 35000HP 1490152 NP_872748.1 CDS HD0142 NC_002940.2 97508 97816 D hypothetical protein 97508..97816 Haemophilus ducreyi 35000HP 1490153 NP_872749.1 CDS HD0143 NC_002940.2 97831 98232 D bacteriophage TM4 gp14 protein 97831..98232 Haemophilus ducreyi 35000HP 1490154 NP_872750.1 CDS HD0144 NC_002940.2 98214 98309 D hypothetical protein 98214..98309 Haemophilus ducreyi 35000HP 1490155 NP_872751.1 CDS HD0145 NC_002940.2 98318 99310 D hypothetical protein 98318..99310 Haemophilus ducreyi 35000HP 1490156 NP_872752.1 CDS HD0146 NC_002940.2 99312 100277 D hypothetical protein 99312..100277 Haemophilus ducreyi 35000HP 1490157 NP_872753.1 CDS HD0147 NC_002940.2 100283 100579 D hypothetical protein 100283..100579 Haemophilus ducreyi 35000HP 1490158 NP_872754.1 CDS HD0148 NC_002940.2 100604 101974 D hypothetical protein 100604..101974 Haemophilus ducreyi 35000HP 1490159 NP_872755.1 CDS HD0149 NC_002940.2 102012 102200 D hypothetical protein 102012..102200 Haemophilus ducreyi 35000HP 1490160 NP_872756.1 CDS HD0150 NC_002940.2 102209 102820 D hypothetical protein 102209..102820 Haemophilus ducreyi 35000HP 1490161 NP_872757.1 CDS HD0151 NC_002940.2 102830 103078 D hypothetical protein 102830..103078 Haemophilus ducreyi 35000HP 1490162 NP_872758.1 CDS HD0152 NC_002940.2 103082 103288 D hypothetical protein 103082..103288 Haemophilus ducreyi 35000HP 1490163 NP_872759.1 CDS HD0153 NC_002940.2 103288 103758 D hypothetical protein 103288..103758 Haemophilus ducreyi 35000HP 1490164 NP_872760.1 CDS HD0154 NC_002940.2 103742 105391 D hypothetical protein 103742..105391 Haemophilus ducreyi 35000HP 1490165 NP_872761.1 CDS HD0155 NC_002940.2 105420 106013 D hypothetical protein 105420..106013 Haemophilus ducreyi 35000HP 1490166 NP_872762.1 CDS HD0156 NC_002940.2 106110 106940 D hypothetical protein 106110..106940 Haemophilus ducreyi 35000HP 1490167 NP_872763.1 CDS HD0157 NC_002940.2 107120 107344 D hypothetical protein 107120..107344 Haemophilus ducreyi 35000HP 1490168 NP_872764.1 CDS HD0158 NC_002940.2 107273 107386 R hypothetical protein complement(107273..107386) Haemophilus ducreyi 35000HP 1490169 NP_872765.1 CDS HD0159 NC_002940.2 107754 108614 D hypothetical protein 107754..108614 Haemophilus ducreyi 35000HP 1490170 NP_872766.1 CDS HD0160 NC_002940.2 108685 108795 R hypothetical protein complement(108685..108795) Haemophilus ducreyi 35000HP 1490171 NP_872767.1 CDS HD0161 NC_002940.2 108921 109334 D hypothetical protein 108921..109334 Haemophilus ducreyi 35000HP 1490172 NP_872768.1 CDS HD0162 NC_002940.2 109890 109988 D hypothetical protein 109890..109988 Haemophilus ducreyi 35000HP 1490173 NP_872769.1 CDS mqo NC_002940.2 111069 112538 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 111069..112538 Haemophilus ducreyi 35000HP 1490175 NP_872770.1 CDS menG NC_002940.2 112673 113170 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 112673..113170 Haemophilus ducreyi 35000HP 1490176 NP_872771.1 CDS HD0167 NC_002940.2 113225 113329 R hypothetical protein complement(113225..113329) Haemophilus ducreyi 35000HP 1490177 NP_872772.1 CDS HD0168 NC_002940.2 113672 113935 R hypothetical protein complement(113672..113935) Haemophilus ducreyi 35000HP 1490178 NP_872773.1 CDS ppa NC_002940.2 114009 114536 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 114009..114536 Haemophilus ducreyi 35000HP 1490179 NP_872774.1 CDS HD0170 NC_002940.2 114746 114904 R hypothetical protein complement(114746..114904) Haemophilus ducreyi 35000HP 1490180 NP_872775.1 CDS HD0171 NC_002940.2 114974 115081 D hypothetical protein 114974..115081 Haemophilus ducreyi 35000HP 1490181 NP_872776.1 CDS nudH NC_002940.2 115108 115701 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 115108..115701 Haemophilus ducreyi 35000HP 1490182 NP_872777.1 CDS HD0173 NC_002940.2 115704 116495 D hypothetical protein 115704..116495 Haemophilus ducreyi 35000HP 1490183 NP_872778.1 CDS lgt NC_002940.2 116565 117362 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 116565..117362 Haemophilus ducreyi 35000HP 1490184 NP_872779.1 CDS HD0175 NC_002940.2 117345 117476 R hypothetical protein complement(117345..117476) Haemophilus ducreyi 35000HP 1490185 NP_872780.1 CDS gph NC_002940.2 117436 118098 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 117436..118098 Haemophilus ducreyi 35000HP 1490186 NP_872781.1 CDS trpS NC_002940.2 118266 119294 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 118266..119294 Haemophilus ducreyi 35000HP 1490187 NP_872782.1 CDS HD0178 NC_002940.2 119385 119831 R hypothetical protein complement(119385..119831) Haemophilus ducreyi 35000HP 1490188 NP_872783.1 CDS lonH NC_002940.2 119914 121551 D lon protease 119914..121551 Haemophilus ducreyi 35000HP 1490189 NP_872784.1 CDS HD0180 NC_002940.2 121573 121665 D hypothetical protein 121573..121665 Haemophilus ducreyi 35000HP 1490190 NP_872785.1 CDS fabA NC_002940.2 121662 122192 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 121662..122192 Haemophilus ducreyi 35000HP 1490191 NP_872786.1 CDS HD0182 NC_002940.2 122281 122820 D hypothetical protein 122281..122820 Haemophilus ducreyi 35000HP 1490192 NP_872787.1 CDS HD0183 NC_002940.2 122768 123487 D hypothetical protein 122768..123487 Haemophilus ducreyi 35000HP 1490193 NP_872788.1 CDS HD0184 NC_002940.2 123462 124148 D hypothetical protein 123462..124148 Haemophilus ducreyi 35000HP 1490194 NP_872789.1 CDS HD0185 NC_002940.2 124168 124458 D hypothetical protein 124168..124458 Haemophilus ducreyi 35000HP 1490195 NP_872790.1 CDS recC NC_002940.2 124536 127877 D exodeoxyribonuclease V subunit gamma 124536..127877 Haemophilus ducreyi 35000HP 1490196 NP_872791.1 CDS ptrA NC_002940.2 127874 130828 D protease III 127874..130828 Haemophilus ducreyi 35000HP 1490197 NP_872792.1 CDS dnaJ NC_002940.2 130926 132059 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(130926..132059) Haemophilus ducreyi 35000HP 1490198 NP_872793.1 CDS dnaK NC_002940.2 132286 134190 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(132286..134190) Haemophilus ducreyi 35000HP 1490199 NP_872794.1 CDS pepO NC_002940.2 134398 136569 D metallopeptidase 134398..136569 Haemophilus ducreyi 35000HP 1490200 NP_872795.1 CDS HD0190 NC_002940.2 134432 134533 R hypothetical protein complement(134432..134533) Haemophilus ducreyi 35000HP 1490201 NP_872796.1 CDS HD0192 NC_002940.2 136704 137174 R hypothetical protein complement(136704..137174) Haemophilus ducreyi 35000HP 1490202 NP_872797.1 CDS HD0193 NC_002940.2 137257 137352 D hypothetical protein 137257..137352 Haemophilus ducreyi 35000HP 1490203 NP_872798.1 CDS rne NC_002940.2 137451 140393 R ribonuclease E complement(137451..140393) Haemophilus ducreyi 35000HP 1490204 NP_872799.1 CDS HD0195 NC_002940.2 140859 141857 D hypothetical protein 140859..141857 Haemophilus ducreyi 35000HP 1490205 NP_872800.1 CDS HD0196 NC_002940.2 141889 142410 R hypothetical protein complement(141889..142410) Haemophilus ducreyi 35000HP 1490206 NP_872801.1 CDS ubiD NC_002940.2 142571 144034 R polyprenyl P-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(142571..144034) Haemophilus ducreyi 35000HP 1490207 NP_872802.1 CDS znuA NC_002940.2 144181 145113 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein 144181..145113 Haemophilus ducreyi 35000HP 1490208 NP_872803.1 CDS rpiA NC_002940.2 145225 145884 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(145225..145884) Haemophilus ducreyi 35000HP 1490209 NP_872804.1 CDS glmM NC_002940.2 145999 147333 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(145999..147333) Haemophilus ducreyi 35000HP 1490210 NP_872805.1 CDS slyD NC_002940.2 147529 148098 R FKBP-type peptidylprolyl isomerase complement(147529..148098) Haemophilus ducreyi 35000HP 1490211 NP_872806.1 CDS rplU NC_002940.2 148390 148701 D 50S ribosomal protein L21 148390..148701 Haemophilus ducreyi 35000HP 1490212 NP_872807.1 CDS rpmA NC_002940.2 148722 148979 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 148722..148979 Haemophilus ducreyi 35000HP 1490213 NP_872808.1 CDS HD0206 NC_002940.2 149085 150017 D hypothetical protein 149085..150017 Haemophilus ducreyi 35000HP 1490214 NP_872809.1 CDS HD0207 NC_002940.2 150068 150877 R hypothetical protein complement(150068..150877) Haemophilus ducreyi 35000HP 1490215 NP_872810.1 CDS comF NC_002940.2 150998 151675 D competence protein F 150998..151675 Haemophilus ducreyi 35000HP 1490216 NP_872811.1 CDS rsmC NC_002940.2 151724 152713 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(151724..152713) Haemophilus ducreyi 35000HP 1490217 NP_872812.1 CDS holD NC_002940.2 152892 153296 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 152892..153296 Haemophilus ducreyi 35000HP 1490218 NP_872813.1 CDS rimI NC_002940.2 153305 153742 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 153305..153742 Haemophilus ducreyi 35000HP 1490219 NP_872814.1 CDS srmB NC_002940.2 153787 155115 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 153787..155115 Haemophilus ducreyi 35000HP 1490220 NP_872815.1 CDS pdxH NC_002940.2 155182 155811 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 155182..155811 Haemophilus ducreyi 35000HP 1490221 NP_872816.1 CDS hbpA NC_002940.2 155855 157489 R heme-binding protein A complement(155855..157489) Haemophilus ducreyi 35000HP 1490222 NP_872817.1 CDS HD0216 NC_002940.2 157650 157817 R hypothetical protein complement(157650..157817) Haemophilus ducreyi 35000HP 1490223 NP_872818.1 CDS lpxK NC_002940.2 157810 158796 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(157810..158796) Haemophilus ducreyi 35000HP 1490224 NP_872819.1 CDS clpX NC_002940.2 158826 160082 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding protein ClpX complement(158826..160082) Haemophilus ducreyi 35000HP 1490225 NP_872820.1 CDS clpP NC_002940.2 160082 160675 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(160082..160675) Haemophilus ducreyi 35000HP 1490226 NP_872821.1 CDS HD0222 NC_002940.2 160813 161205 D hypothetical protein 160813..161205 Haemophilus ducreyi 35000HP 1490227 NP_872822.1 CDS dnaQ NC_002940.2 161456 162226 R DNA polymerase III subunit epsilon complement(161456..162226) Haemophilus ducreyi 35000HP 1490229 NP_872823.1 CDS HD0224 NC_002940.2 162299 163969 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(162299..163969) Haemophilus ducreyi 35000HP 1490230 NP_872824.1 CDS HD0226 NC_002940.2 164055 165482 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(164055..165482) Haemophilus ducreyi 35000HP 1490231 NP_872825.1 CDS crr NC_002940.2 165662 166165 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter complement(165662..166165) Haemophilus ducreyi 35000HP 1490232 NP_872826.1 CDS ptsI NC_002940.2 166255 167976 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase complement(166255..167976) Haemophilus ducreyi 35000HP 1490233 NP_872827.1 CDS ptsH NC_002940.2 168107 168364 R PTS system phosphocarrier protein HPr complement(168107..168364) Haemophilus ducreyi 35000HP 1490234 NP_872828.1 CDS thiP NC_002940.2 168639 170225 D permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 168639..170225 Haemophilus ducreyi 35000HP 1490235 NP_872829.1 CDS thiQ NC_002940.2 170222 170863 D thiamin ABC transporter ATP-binding protein 170222..170863 Haemophilus ducreyi 35000HP 1490236 NP_872830.1 CDS arcB1 NC_002940.2 170989 171993 R ornithine carbamoyltransferase complement(170989..171993) Haemophilus ducreyi 35000HP 1490237 NP_872831.1 CDS carB NC_002940.2 172092 175319 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(172092..175319) Haemophilus ducreyi 35000HP 1490238 NP_872832.1 CDS carA NC_002940.2 175357 176526 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(175357..176526) Haemophilus ducreyi 35000HP 1490239 NP_872833.1 CDS HD0236 NC_002940.2 176633 176782 R hypothetical protein complement(176633..176782) Haemophilus ducreyi 35000HP 1490240 NP_872834.1 CDS dcuB2 NC_002940.2 176846 178180 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 176846..178180 Haemophilus ducreyi 35000HP 1490241 NP_872835.1 CDS HD0238 NC_002940.2 178184 178312 D hypothetical protein 178184..178312 Haemophilus ducreyi 35000HP 1490242 NP_872836.1 CDS mraW NC_002940.2 178471 179412 D S-adenosyl-methyltransferase MraW 178471..179412 Haemophilus ducreyi 35000HP 1490243 NP_872837.1 CDS ftsL NC_002940.2 179425 179739 D cell division protein FtsL 179425..179739 Haemophilus ducreyi 35000HP 1490244 NP_872838.1 CDS ftsI NC_002940.2 179745 181790 D penicillin-binding protein 3 179745..181790 Haemophilus ducreyi 35000HP 1490245 NP_872839.1 CDS murE NC_002940.2 181813 183318 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 181813..183318 Haemophilus ducreyi 35000HP 1490246 NP_872840.1 CDS murF NC_002940.2 183362 184765 D UDP-MurNAc-pentapeptide synthetase 183362..184765 Haemophilus ducreyi 35000HP 1490247 NP_872841.1 CDS mraY NC_002940.2 184765 185847 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 184765..185847 Haemophilus ducreyi 35000HP 1490248 NP_872842.1 CDS murD NC_002940.2 185927 187234 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 185927..187234 Haemophilus ducreyi 35000HP 1490249 NP_872843.1 CDS ftsW NC_002940.2 187238 188431 D cell division protein FtsW 187238..188431 Haemophilus ducreyi 35000HP 1490250 NP_872844.1 CDS HD0247 NC_002940.2 188468 188959 D hypothetical protein 188468..188959 Haemophilus ducreyi 35000HP 1490251 NP_872845.1 CDS map NC_002940.2 189019 189825 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(189019..189825) Haemophilus ducreyi 35000HP 1490252 NP_872846.1 CDS HD0250 NC_002940.2 189914 190579 R hypothetical protein complement(189914..190579) Haemophilus ducreyi 35000HP 1490253 NP_872847.1 CDS murA NC_002940.2 191658 192938 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(191658..192938) Haemophilus ducreyi 35000HP 1490255 NP_872848.1 CDS HD0254 NC_002940.2 193041 193301 R hypothetical protein complement(193041..193301) Haemophilus ducreyi 35000HP 1490256 NP_872849.1 CDS HD0255 NC_002940.2 193310 193651 R anti-sigma factor B antagonist complement(193310..193651) Haemophilus ducreyi 35000HP 1490257 NP_872850.1 CDS HD0256 NC_002940.2 193659 194297 R hypothetical protein complement(193659..194297) Haemophilus ducreyi 35000HP 1490258 NP_872851.1 CDS HD0257 NC_002940.2 194398 194883 R hypothetical protein complement(194398..194883) Haemophilus ducreyi 35000HP 1490259 NP_872852.1 CDS HD0258 NC_002940.2 194904 195683 R permease complement(194904..195683) Haemophilus ducreyi 35000HP 1490260 NP_872853.1 CDS HD0259 NC_002940.2 195673 196476 R ABC transporter ATP-binding protein complement(195673..196476) Haemophilus ducreyi 35000HP 1490261 NP_872854.1 CDS degP NC_002940.2 196739 198157 D periplasmic serine protease do 196739..198157 Haemophilus ducreyi 35000HP 1490262 NP_872855.1 CDS HD0261 NC_002940.2 198202 199095 R hypothetical protein complement(198202..199095) Haemophilus ducreyi 35000HP 1490263 NP_872856.1 CDS argR NC_002940.2 199095 199556 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR complement(199095..199556) Haemophilus ducreyi 35000HP 1490264 NP_872857.1 CDS mdh NC_002940.2 199746 200720 D oxidizes malate to oxaloacetate; malate dehydrogenase 199746..200720 Haemophilus ducreyi 35000HP 1490265 NP_872858.1 CDS lpp NC_002940.2 200788 201258 R hypothetical protein complement(200788..201258) Haemophilus ducreyi 35000HP 1490266 NP_872859.1 CDS HD0267 NC_002940.2 201282 201878 R hypothetical protein complement(201282..201878) Haemophilus ducreyi 35000HP 1490267 NP_872860.2 CDS argS NC_002940.2 201978 203705 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 201978..203705 Haemophilus ducreyi 35000HP 1490268 NP_872861.1 CDS obgE NC_002940.2 203812 204987 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 203812..204987 Haemophilus ducreyi 35000HP 1490269 NP_872862.1 CDS HD0270 NC_002940.2 205071 205811 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(205071..205811) Haemophilus ducreyi 35000HP 1490270 NP_872863.1 CDS pssA NC_002940.2 205844 207208 R catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase complement(205844..207208) Haemophilus ducreyi 35000HP 1490271 NP_872864.1 CDS ileS NC_002940.2 207310 210117 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(207310..210117) Haemophilus ducreyi 35000HP 1490272 NP_872865.1 CDS ribF NC_002940.2 210152 211132 R riboflavin biosynthesis protein RibF complement(210152..211132) Haemophilus ducreyi 35000HP 1490273 NP_872866.1 CDS HD0276 NC_002940.2 212735 212932 D hypothetical protein 212735..212932 Haemophilus ducreyi 35000HP 1490275 NP_872867.1 CDS HD0277 NC_002940.2 212929 213438 D phosphoesterase 212929..213438 Haemophilus ducreyi 35000HP 1490276 NP_872868.1 CDS arcA NC_002940.2 213635 214348 D two-component response regulator 213635..214348 Haemophilus ducreyi 35000HP 1490277 NP_872869.1 CDS HD0279 NC_002940.2 214484 215005 D hypothetical protein 214484..215005 Haemophilus ducreyi 35000HP 1490278 NP_872870.1 CDS HD0280 NC_002940.2 215430 215663 R hypothetical protein complement(215430..215663) Haemophilus ducreyi 35000HP 1490279 NP_872871.1 CDS fimA NC_002940.2 215687 216253 D fimbrial major pilin protein 215687..216253 Haemophilus ducreyi 35000HP 1490280 NP_872872.1 CDS fimB NC_002940.2 216292 216789 D fimbrial structural subunit 216292..216789 Haemophilus ducreyi 35000HP 1490281 NP_872873.1 CDS fimC NC_002940.2 216833 219334 D fimbrial outer membrane usher protein 216833..219334 Haemophilus ducreyi 35000HP 1490282 NP_872874.1 CDS fimD NC_002940.2 219386 220126 D periplasmic fimbrial chaperone 219386..220126 Haemophilus ducreyi 35000HP 1490283 NP_872875.1 CDS HD0285 NC_002940.2 220188 220709 D minor fimbrial subunit 220188..220709 Haemophilus ducreyi 35000HP 1490284 NP_872876.1 CDS HD0286 NC_002940.2 220769 221290 D hypothetical protein 220769..221290 Haemophilus ducreyi 35000HP 1490285 NP_872877.1 CDS HD0287 NC_002940.2 221365 221835 D hypothetical protein 221365..221835 Haemophilus ducreyi 35000HP 1490286 NP_872878.1 CDS HD0288 NC_002940.2 221870 222337 D hypothetical protein 221870..222337 Haemophilus ducreyi 35000HP 1490287 NP_872879.1 CDS HD0289 NC_002940.2 222366 222851 R hypothetical protein complement(222366..222851) Haemophilus ducreyi 35000HP 1490288 NP_872880.1 CDS HD0290 NC_002940.2 222797 223390 R hypothetical protein complement(222797..223390) Haemophilus ducreyi 35000HP 1490289 NP_872881.1 CDS HD0291 NC_002940.2 223368 223835 R transposase complement(223368..223835) Haemophilus ducreyi 35000HP 1490290 NP_872882.1 CDS HD0292 NC_002940.2 223958 224296 D hypothetical protein 223958..224296 Haemophilus ducreyi 35000HP 1490291 NP_872883.1 CDS HD0293 NC_002940.2 224483 225823 D type II DNA modification (methyltransferase 224483..225823 Haemophilus ducreyi 35000HP 1490292 NP_872884.1 CDS HD0294 NC_002940.2 225932 226924 D type II DNA restriction endonuclease 225932..226924 Haemophilus ducreyi 35000HP 1490293 NP_872885.1 CDS HD0295 NC_002940.2 227282 227635 D hypothetical protein 227282..227635 Haemophilus ducreyi 35000HP 1490294 NP_872886.1 CDS HD0296 NC_002940.2 227681 228172 D hypothetical protein 227681..228172 Haemophilus ducreyi 35000HP 1490295 NP_872887.1 CDS HD0297 NC_002940.2 228350 228886 R hypothetical protein complement(228350..228886) Haemophilus ducreyi 35000HP 1490296 NP_872888.1 CDS fkuA NC_002940.2 228941 229645 D K+ uptake protein 228941..229645 Haemophilus ducreyi 35000HP 1490297 NP_872889.1 CDS typA NC_002940.2 229829 231676 D GTP-binding protein, elongation factor typA/bipA-like protein 229829..231676 Haemophilus ducreyi 35000HP 1490298 NP_872890.1 CDS grxA NC_002940.2 231796 232059 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 231796..232059 Haemophilus ducreyi 35000HP 1490299 NP_872891.1 CDS rph NC_002940.2 232099 232815 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(232099..232815) Haemophilus ducreyi 35000HP 1490300 NP_872892.1 CDS HD0302 NC_002940.2 232966 233829 D hypothetical protein 232966..233829 Haemophilus ducreyi 35000HP 1490301 NP_872893.1 CDS HD0303 NC_002940.2 233837 234724 D hypothetical protein 233837..234724 Haemophilus ducreyi 35000HP 1490302 NP_872894.1 CDS fdx1 NC_002940.2 234781 235041 R ferredoxin complement(234781..235041) Haemophilus ducreyi 35000HP 1490303 NP_872895.1 CDS narP NC_002940.2 235104 235745 R nitrate/nitrite response regulator protein complement(235104..235745) Haemophilus ducreyi 35000HP 1490304 NP_872896.1 CDS HD0306 NC_002940.2 235841 235948 R hypothetical protein complement(235841..235948) Haemophilus ducreyi 35000HP 1490305 NP_872897.1 CDS rlmL NC_002940.2 235938 238085 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 235938..238085 Haemophilus ducreyi 35000HP 1490306 NP_872898.1 CDS HD0308 NC_002940.2 238123 238602 D tRNA/rRNA methyltransferase 238123..238602 Haemophilus ducreyi 35000HP 1490307 NP_872899.1 CDS tal NC_002940.2 238701 239648 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(238701..239648) Haemophilus ducreyi 35000HP 1490308 NP_872900.1 CDS HD0311 NC_002940.2 246105 246221 D hypothetical protein 246105..246221 Haemophilus ducreyi 35000HP 1490315 NP_872901.1 CDS dppB NC_002940.2 246284 247288 D dipeptide transport system permease 246284..247288 Haemophilus ducreyi 35000HP 1490316 NP_872902.1 CDS dppC NC_002940.2 247309 248196 D dipeptide transport system permease 247309..248196 Haemophilus ducreyi 35000HP 1490317 NP_872903.1 CDS dppD NC_002940.2 248208 249212 D DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding protein 248208..249212 Haemophilus ducreyi 35000HP 1490318 NP_872904.1 CDS dppF NC_002940.2 249190 250194 D Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding protein 249190..250194 Haemophilus ducreyi 35000HP 1490319 NP_872905.1 CDS HD0317 NC_002940.2 250251 252569 R transcription accessory protein tex-like protein complement(250251..252569) Haemophilus ducreyi 35000HP 1490320 NP_872906.1 CDS HD0318 NC_002940.2 252640 253185 R fimbrial biogenesis and twitching motility protein PilF-like protein complement(252640..253185) Haemophilus ducreyi 35000HP 1490321 NP_872907.1 CDS HD0319 NC_002940.2 253224 254405 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(253224..254405) Haemophilus ducreyi 35000HP 1490322 NP_872908.1 CDS gltX NC_002940.2 255170 256609 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 255170..256609 Haemophilus ducreyi 35000HP 1490325 NP_872909.1 CDS sodA NC_002940.2 256863 257504 R manganese superoxide dismutase complement(256863..257504) Haemophilus ducreyi 35000HP 1490327 NP_872910.1 CDS HD0322 NC_002940.2 257643 257996 R hypothetical protein complement(257643..257996) Haemophilus ducreyi 35000HP 1490328 NP_872911.1 CDS HD0323 NC_002940.2 258033 258131 D hypothetical protein 258033..258131 Haemophilus ducreyi 35000HP 1490329 NP_872912.1 CDS HD0324 NC_002940.2 258140 258463 R glutaredoxin-like protein complement(258140..258463) Haemophilus ducreyi 35000HP 1490330 NP_872913.1 CDS recR NC_002940.2 258535 259140 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(258535..259140) Haemophilus ducreyi 35000HP 1490331 NP_872914.1 CDS HD0326 NC_002940.2 259206 259535 R hypothetical protein complement(259206..259535) Haemophilus ducreyi 35000HP 1490332 NP_872915.1 CDS tonB NC_002940.2 259687 260526 R TobB energy transducing protein complement(259687..260526) Haemophilus ducreyi 35000HP 1490333 NP_872916.1 CDS exbD NC_002940.2 260536 260925 R biopolymer transport protein complement(260536..260925) Haemophilus ducreyi 35000HP 1490334 NP_872917.1 CDS exbB NC_002940.2 260970 261422 R biopolymer transport protein complement(260970..261422) Haemophilus ducreyi 35000HP 1490335 NP_872918.1 CDS glpE NC_002940.2 261618 261950 D thiosulfate sulfurtransferase 261618..261950 Haemophilus ducreyi 35000HP 1490336 NP_872919.1 CDS HD0331 NC_002940.2 261966 262811 D thioredoxin-like protein 261966..262811 Haemophilus ducreyi 35000HP 1490337 NP_872920.1 CDS HD0332 NC_002940.2 262768 262872 D hypothetical protein 262768..262872 Haemophilus ducreyi 35000HP 1490338 NP_872921.1 CDS trxB NC_002940.2 262911 263864 D thioredoxin reductase 262911..263864 Haemophilus ducreyi 35000HP 1490339 NP_872922.1 CDS kdsB NC_002940.2 263881 264642 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 263881..264642 Haemophilus ducreyi 35000HP 1490340 NP_872923.1 CDS HD0336 NC_002940.2 264625 264732 R hypothetical protein complement(264625..264732) Haemophilus ducreyi 35000HP 1490341 NP_872924.1 CDS rluB NC_002940.2 264722 265411 R pseudouridylate synthase complement(264722..265411) Haemophilus ducreyi 35000HP 1490342 NP_872925.1 CDS HD0338 NC_002940.2 265415 265837 R hypothetical protein complement(265415..265837) Haemophilus ducreyi 35000HP 1490343 NP_872926.1 CDS sirA NC_002940.2 266020 266259 D TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 266020..266259 Haemophilus ducreyi 35000HP 1490344 NP_872927.1 CDS HD0340 NC_002940.2 266374 266805 R hypothetical protein complement(266374..266805) Haemophilus ducreyi 35000HP 1490345 NP_872928.1 CDS engB NC_002940.2 266807 267439 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(266807..267439) Haemophilus ducreyi 35000HP 1490346 NP_872929.1 CDS HD0343 NC_002940.2 267500 267922 R hypothetical protein complement(267500..267922) Haemophilus ducreyi 35000HP 1490347 NP_872930.1 CDS nrfA NC_002940.2 268342 269808 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 268342..269808 Haemophilus ducreyi 35000HP 1490348 NP_872931.1 CDS nrfB NC_002940.2 269829 270473 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 269829..270473 Haemophilus ducreyi 35000HP 1490349 NP_872932.1 CDS nrfC NC_002940.2 270473 271150 D nitrate reductase, Fe-S protein 270473..271150 Haemophilus ducreyi 35000HP 1490350 NP_872933.1 CDS nrfD NC_002940.2 271150 272115 D nitrate reductase, transmembrane protein 271150..272115 Haemophilus ducreyi 35000HP 1490351 NP_872934.1 CDS prfC NC_002940.2 272333 273913 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 272333..273913 Haemophilus ducreyi 35000HP 1490352 NP_872935.1 CDS HD0352 NC_002940.2 274007 274099 D hypothetical protein 274007..274099 Haemophilus ducreyi 35000HP 1490353 NP_872936.1 CDS htpX NC_002940.2 274131 275000 D metalloprotease; heat shock protein HtpX 274131..275000 Haemophilus ducreyi 35000HP 1490354 NP_872937.1 CDS gshR NC_002940.2 275169 276539 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 275169..276539 Haemophilus ducreyi 35000HP 1490355 NP_872938.1 CDS HD0356 NC_002940.2 276603 277403 R deoxyribonuclease complement(276603..277403) Haemophilus ducreyi 35000HP 1490356 NP_872939.1 CDS HD0357 NC_002940.2 277467 279053 R carbon starvation protein A complement(277467..279053) Haemophilus ducreyi 35000HP 1490357 NP_872940.1 CDS HD0358 NC_002940.2 279428 279919 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(279428..279919) Haemophilus ducreyi 35000HP 1490358 NP_872941.1 CDS HD0359 NC_002940.2 279932 280072 R hypothetical protein complement(279932..280072) Haemophilus ducreyi 35000HP 1490359 NP_872942.1 CDS aphA NC_002940.2 280189 280851 D AphA (smp-like) protein 280189..280851 Haemophilus ducreyi 35000HP 1490360 NP_872943.1 CDS infA NC_002940.2 280938 281156 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 280938..281156 Haemophilus ducreyi 35000HP 1490361 NP_872944.1 CDS HD0362 NC_002940.2 281227 282417 R hypothetical protein complement(281227..282417) Haemophilus ducreyi 35000HP 1490362 NP_872945.1 CDS HD0363 NC_002940.2 282448 283434 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(282448..283434) Haemophilus ducreyi 35000HP 1490363 NP_872946.1 CDS HD0364 NC_002940.2 283516 283989 D transcriptional regulator 283516..283989 Haemophilus ducreyi 35000HP 1490364 NP_872947.1 CDS HD0365 NC_002940.2 284215 284511 D LexA regulated protein 284215..284511 Haemophilus ducreyi 35000HP 1490365 NP_872948.1 CDS fldA NC_002940.2 284522 285046 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 284522..285046 Haemophilus ducreyi 35000HP 1490366 NP_872949.1 CDS fur NC_002940.2 285076 285525 D ferric uptake regulation protein 285076..285525 Haemophilus ducreyi 35000HP 1490367 NP_872950.1 CDS HD0369 NC_002940.2 285737 288391 D hypothetical protein 285737..288391 Haemophilus ducreyi 35000HP 1490368 NP_872951.1 CDS luxS NC_002940.2 288423 288932 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 288423..288932 Haemophilus ducreyi 35000HP 1490369 NP_872952.1 CDS HD0371 NC_002940.2 288999 290624 D hypothetical protein 288999..290624 Haemophilus ducreyi 35000HP 1490370 NP_872953.1 CDS ansB NC_002940.2 290711 291760 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(290711..291760) Haemophilus ducreyi 35000HP 1490371 NP_872954.1 CDS pyrG NC_002940.2 292034 293671 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 292034..293671 Haemophilus ducreyi 35000HP 1490372 NP_872955.1 CDS HD0374 NC_002940.2 293783 294289 D hypothetical protein 293783..294289 Haemophilus ducreyi 35000HP 1490373 NP_872956.1 CDS HD0375 NC_002940.2 294325 295125 D glycosyltransferase 294325..295125 Haemophilus ducreyi 35000HP 1490374 NP_872957.1 CDS HD0376 NC_002940.2 295204 296175 R tRNA-dihydrouridine synthase A complement(295204..296175) Haemophilus ducreyi 35000HP 1490375 NP_872958.1 CDS add NC_002940.2 296430 297464 D catalyzes the formation of inosine from adenosine; adenosine deaminase 296430..297464 Haemophilus ducreyi 35000HP 1490376 NP_872959.1 CDS HD0378 NC_002940.2 297566 298165 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein complement(297566..298165) Haemophilus ducreyi 35000HP 1490377 NP_872960.1 CDS nqrA NC_002940.2 298640 299971 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 298640..299971 Haemophilus ducreyi 35000HP 1490378 NP_872961.1 CDS nqrB NC_002940.2 299976 301208 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 299976..301208 Haemophilus ducreyi 35000HP 1490379 NP_872962.1 CDS nqrC NC_002940.2 301210 301983 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 301210..301983 Haemophilus ducreyi 35000HP 1490380 NP_872963.1 CDS nqrD NC_002940.2 301983 302606 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 301983..302606 Haemophilus ducreyi 35000HP 1490381 NP_872964.1 CDS nqrE NC_002940.2 302608 303204 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 302608..303204 Haemophilus ducreyi 35000HP 1490382 NP_872965.1 CDS nqrF NC_002940.2 303215 304444 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 303215..304444 Haemophilus ducreyi 35000HP 1490383 NP_872966.1 CDS apbE NC_002940.2 304613 305641 D thiamine biosynthesis lipoprotein 304613..305641 Haemophilus ducreyi 35000HP 1490384 NP_872967.1 CDS HD0387 NC_002940.2 305653 305901 D hypothetical protein 305653..305901 Haemophilus ducreyi 35000HP 1490385 NP_872968.1 CDS tdhA NC_002940.2 305957 308176 R ton-dependent heme receptor A complement(305957..308176) Haemophilus ducreyi 35000HP 1490386 NP_872969.1 CDS mnmA NC_002940.2 308379 309533 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 308379..309533 Haemophilus ducreyi 35000HP 1490387 NP_872970.1 CDS hcat NC_002940.2 309601 310755 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(309601..310755) Haemophilus ducreyi 35000HP 1490388 NP_872971.1 CDS rdgC NC_002940.2 310898 311800 D Required for efficient pilin antigenic variation; recombination associated protein 310898..311800 Haemophilus ducreyi 35000HP 1490389 NP_872972.1 CDS HD0393 NC_002940.2 311911 313692 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(311911..313692) Haemophilus ducreyi 35000HP 1490390 NP_872973.1 CDS HD0394 NC_002940.2 313692 314165 R hypothetical protein complement(313692..314165) Haemophilus ducreyi 35000HP 1490391 NP_872974.1 CDS rnfA NC_002940.2 314537 315118 D Na(+)-translocating NADH-quinone reductase subunit E 314537..315118 Haemophilus ducreyi 35000HP 1490392 NP_872975.1 CDS rnfB NC_002940.2 315118 315741 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 315118..315741 Haemophilus ducreyi 35000HP 1490393 NP_872976.1 CDS rnfC NC_002940.2 315734 317842 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 315734..317842 Haemophilus ducreyi 35000HP 1490394 NP_872977.1 CDS rnfD NC_002940.2 317848 318894 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 317848..318894 Haemophilus ducreyi 35000HP 1490395 NP_872978.1 CDS rnfG NC_002940.2 318894 319526 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 318894..319526 Haemophilus ducreyi 35000HP 1490396 NP_872979.1 CDS rnfE NC_002940.2 319526 320209 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 319526..320209 Haemophilus ducreyi 35000HP 1490397 NP_872980.1 CDS lpxM NC_002940.2 320252 321208 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 320252..321208 Haemophilus ducreyi 35000HP 1490398 NP_872981.1 CDS HD0405 NC_002940.2 321251 321700 R hypothetical protein complement(321251..321700) Haemophilus ducreyi 35000HP 1490399 NP_872982.1 CDS trpG NC_002940.2 321755 322342 R catalyzes the formation of anthranilate from chorismate and glutamine; functions in tryptophan biosynthesis; anthranilate synthase component II complement(321755..322342) Haemophilus ducreyi 35000HP 1490400 NP_872983.1 CDS HD0407 NC_002940.2 322323 323951 R hypothetical protein complement(322323..323951) Haemophilus ducreyi 35000HP 1490401 NP_872984.1 CDS pabB NC_002940.2 324068 325057 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 324068..325057 Haemophilus ducreyi 35000HP 1490402 NP_872985.1 CDS HD0409 NC_002940.2 325035 325634 D hypothetical protein 325035..325634 Haemophilus ducreyi 35000HP 1490403 NP_872986.1 CDS recA NC_002940.2 325753 326871 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 325753..326871 Haemophilus ducreyi 35000HP 1490404 NP_872987.1 CDS recX NC_002940.2 326950 327405 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 326950..327405 Haemophilus ducreyi 35000HP 1490405 NP_872988.1 CDS HD0412 NC_002940.2 327398 327706 D hypothetical protein 327398..327706 Haemophilus ducreyi 35000HP 1490406 NP_872989.1 CDS HD0413 NC_002940.2 327703 328239 D DNA topoisomerase I-related protein 327703..328239 Haemophilus ducreyi 35000HP 1490407 NP_872990.1 CDS HD0414 NC_002940.2 328232 328786 D hypothetical protein 328232..328786 Haemophilus ducreyi 35000HP 1490408 NP_872991.1 CDS aroE NC_002940.2 328786 329616 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 328786..329616 Haemophilus ducreyi 35000HP 1490409 NP_872992.1 CDS HD0416 NC_002940.2 329609 329806 R hypothetical protein complement(329609..329806) Haemophilus ducreyi 35000HP 1490410 NP_872993.1 CDS HD0417 NC_002940.2 330182 330433 D hypothetical protein 330182..330433 Haemophilus ducreyi 35000HP 1490414 NP_872994.1 CDS pgi NC_002940.2 330472 332115 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 330472..332115 Haemophilus ducreyi 35000HP 1490415 NP_872995.1 CDS HD0419 NC_002940.2 332216 333574 R sodium-dependent transporter complement(332216..333574) Haemophilus ducreyi 35000HP 1490416 NP_872996.1 CDS dam NC_002940.2 333655 334491 R DNA adenine methylase complement(333655..334491) Haemophilus ducreyi 35000HP 1490417 NP_872997.1 CDS HD0421 NC_002940.2 334401 334511 D hypothetical protein 334401..334511 Haemophilus ducreyi 35000HP 1490418 NP_872998.1 CDS aroB NC_002940.2 334498 335586 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(334498..335586) Haemophilus ducreyi 35000HP 1490419 NP_872999.1 CDS aroK NC_002940.2 335597 336121 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(335597..336121) Haemophilus ducreyi 35000HP 1490420 NP_873000.1 CDS HD0424 NC_002940.2 336150 336275 R hypothetical protein complement(336150..336275) Haemophilus ducreyi 35000HP 1490421 NP_873001.1 CDS HD0425 NC_002940.2 336182 336331 R hypothetical protein complement(336182..336331) Haemophilus ducreyi 35000HP 1490422 NP_873002.1 CDS mrcA NC_002940.2 336370 338988 R penicillin-binding protein 1A complement(336370..338988) Haemophilus ducreyi 35000HP 1490423 NP_873003.1 CDS comA NC_002940.2 339064 339525 D competence protein A-like protein 339064..339525 Haemophilus ducreyi 35000HP 1490424 NP_873004.1 CDS HD0428 NC_002940.2 339529 339732 D hypothetical protein 339529..339732 Haemophilus ducreyi 35000HP 1490425 NP_873005.1 CDS HD0429 NC_002940.2 339758 339859 D hypothetical protein 339758..339859 Haemophilus ducreyi 35000HP 1490426 NP_873006.1 CDS HD0430 NC_002940.2 339831 340055 D hypothetical protein 339831..340055 Haemophilus ducreyi 35000HP 1490427 NP_873007.1 CDS HD0431 NC_002940.2 340046 340231 D hypothetical protein 340046..340231 Haemophilus ducreyi 35000HP 1490428 NP_873008.1 CDS HD0432 NC_002940.2 340212 340754 D hypothetical protein 340212..340754 Haemophilus ducreyi 35000HP 1490429 NP_873009.1 CDS HD0433 NC_002940.2 340757 341152 D hypothetical protein 340757..341152 Haemophilus ducreyi 35000HP 1490430 NP_873010.1 CDS comE NC_002940.2 341162 342421 D competence protein E 341162..342421 Haemophilus ducreyi 35000HP 1490431 NP_873011.1 CDS nusB NC_002940.2 342591 343004 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 342591..343004 Haemophilus ducreyi 35000HP 1490432 NP_873012.1 CDS thiL NC_002940.2 343061 344026 D thiamin-monophosphate kinase 343061..344026 Haemophilus ducreyi 35000HP 1490433 NP_873013.1 CDS pgpA NC_002940.2 344019 344501 D phosphatidylglycerophosphatase A 344019..344501 Haemophilus ducreyi 35000HP 1490434 NP_873014.1 CDS HD0438 NC_002940.2 344631 345680 R tRNA/rRNA methyltransferase complement(344631..345680) Haemophilus ducreyi 35000HP 1490435 NP_873015.1 CDS suhB NC_002940.2 345820 346632 D inositol monophosphatase 345820..346632 Haemophilus ducreyi 35000HP 1490436 NP_873016.1 CDS dxs NC_002940.2 346704 348557 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 346704..348557 Haemophilus ducreyi 35000HP 1490437 NP_873017.1 CDS aroF NC_002940.2 349730 350809 R DAHP synthetase, tyrosine repressible; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(349730..350809) Haemophilus ducreyi 35000HP 1490439 NP_873018.1 CDS HD0445 NC_002940.2 350849 351895 R ADP-heptose--lipooligosaccharide heptosyltransferase I complement(350849..351895) Haemophilus ducreyi 35000HP 1490440 NP_873019.1 CDS pykA NC_002940.2 351995 353434 R pyruvate kinase II complement(351995..353434) Haemophilus ducreyi 35000HP 1490441 NP_873020.1 CDS sixA NC_002940.2 353555 354043 D phosphohistidine phosphatase 353555..354043 Haemophilus ducreyi 35000HP 1490442 NP_873021.1 CDS HD0448 NC_002940.2 354269 355231 D dehydrogenase 354269..355231 Haemophilus ducreyi 35000HP 1490443 NP_873022.1 CDS fis NC_002940.2 355260 355556 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 355260..355556 Haemophilus ducreyi 35000HP 1490444 NP_873023.1 CDS amiB NC_002940.2 355684 356715 R N-acetylmuramoyl-L-alanine amidase complement(355684..356715) Haemophilus ducreyi 35000HP 1490445 NP_873024.1 CDS HD0451 NC_002940.2 356730 357230 R hypothetical protein complement(356730..357230) Haemophilus ducreyi 35000HP 1490446 NP_873025.1 CDS orn NC_002940.2 357272 357823 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(357272..357823) Haemophilus ducreyi 35000HP 1490447 NP_873026.1 CDS coaD NC_002940.2 357816 358301 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(357816..358301) Haemophilus ducreyi 35000HP 1490448 NP_873027.1 CDS waaA NC_002940.2 358304 359587 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(358304..359587) Haemophilus ducreyi 35000HP 1490449 NP_873028.1 CDS HD0455 NC_002940.2 359731 361134 R protease complement(359731..361134) Haemophilus ducreyi 35000HP 1490450 NP_873029.1 CDS HD0457 NC_002940.2 361279 361674 D hypothetical protein 361279..361674 Haemophilus ducreyi 35000HP 1490451 NP_873030.1 CDS HD0458 NC_002940.2 361782 361904 D hypothetical protein 361782..361904 Haemophilus ducreyi 35000HP 1490452 NP_873031.1 CDS HD0459 NC_002940.2 361928 362827 D hypothetical protein 361928..362827 Haemophilus ducreyi 35000HP 1490453 NP_873032.1 CDS HD0460 NC_002940.2 363074 363214 D hypothetical protein 363074..363214 Haemophilus ducreyi 35000HP 1490454 NP_873033.1 CDS HD0461 NC_002940.2 363278 364645 D amino-acid transporter sodium-dependent 363278..364645 Haemophilus ducreyi 35000HP 1490455 NP_873034.1 CDS HD0463 NC_002940.2 364725 364823 D hypothetical protein 364725..364823 Haemophilus ducreyi 35000HP 1490456 NP_873035.1 CDS HD0464 NC_002940.2 364820 366022 D aminotransferase 364820..366022 Haemophilus ducreyi 35000HP 1490457 NP_873036.1 CDS pfkA NC_002940.2 366131 367105 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 366131..367105 Haemophilus ducreyi 35000HP 1490458 NP_873037.1 CDS lgtA NC_002940.2 367222 368214 D lipooligosaccharide N-acetylglucosamine glycosyltransferase 367222..368214 Haemophilus ducreyi 35000HP 1490459 NP_873038.1 CDS HD0467 NC_002940.2 368257 368967 D hypothetical protein 368257..368967 Haemophilus ducreyi 35000HP 1490460 NP_873039.1 CDS rluD NC_002940.2 368975 369952 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D complement(368975..369952) Haemophilus ducreyi 35000HP 1490461 NP_873040.1 CDS HD0470 NC_002940.2 370106 370888 D lipoprotein 370106..370888 Haemophilus ducreyi 35000HP 1490462 NP_873041.1 CDS gcp NC_002940.2 370973 372019 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 370973..372019 Haemophilus ducreyi 35000HP 1490463 NP_873042.1 CDS lgtB NC_002940.2 372034 372876 D lipooligosaccharide galactosyltransferase II 372034..372876 Haemophilus ducreyi 35000HP 1490464 NP_873043.1 CDS recQ NC_002940.2 373282 375087 D ATP-dependent DNA helicase 373282..375087 Haemophilus ducreyi 35000HP 1490466 NP_873044.1 CDS eno NC_002940.2 375156 376457 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(375156..376457) Haemophilus ducreyi 35000HP 1490467 NP_873045.1 CDS HD0478 NC_002940.2 376645 377286 R Catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA (uracil-5-)-methyltransferase complement(376645..377286) Haemophilus ducreyi 35000HP 1490468 NP_873046.1 CDS HD0479 NC_002940.2 377702 378544 R DNA-binding protein complement(377702..378544) Haemophilus ducreyi 35000HP 1490469 NP_873047.1 CDS HD0480 NC_002940.2 378623 378886 D hypothetical protein 378623..378886 Haemophilus ducreyi 35000HP 1490470 NP_873048.1 CDS HD0483 NC_002940.2 380852 381094 R hypothetical protein complement(380852..381094) Haemophilus ducreyi 35000HP 1490472 NP_873049.1 CDS HD0486 NC_002940.2 382034 382240 D hypothetical protein 382034..382240 Haemophilus ducreyi 35000HP 1490474 NP_873050.1 CDS HD0488 NC_002940.2 382227 382571 D hypothetical protein 382227..382571 Haemophilus ducreyi 35000HP 1490475 NP_873051.1 CDS HD0489 NC_002940.2 382582 383199 D hypothetical protein 382582..383199 Haemophilus ducreyi 35000HP 1490476 NP_873052.1 CDS HD0490 NC_002940.2 383253 383501 D hypothetical protein 383253..383501 Haemophilus ducreyi 35000HP 1490477 NP_873053.1 CDS HD0492 NC_002940.2 383505 383684 D hypothetical protein 383505..383684 Haemophilus ducreyi 35000HP 1490478 NP_873054.1 CDS HD0493 NC_002940.2 383703 383999 D hypothetical protein 383703..383999 Haemophilus ducreyi 35000HP 1490479 NP_873055.1 CDS HD0494 NC_002940.2 383996 384199 D hypothetical protein 383996..384199 Haemophilus ducreyi 35000HP 1490480 NP_873056.1 CDS HD0495 NC_002940.2 384200 384478 D hypothetical protein 384200..384478 Haemophilus ducreyi 35000HP 1490481 NP_873057.1 CDS HD0496 NC_002940.2 384518 385102 D hypothetical protein 384518..385102 Haemophilus ducreyi 35000HP 1490482 NP_873058.1 CDS HD0497 NC_002940.2 385086 385514 D hypothetical protein 385086..385514 Haemophilus ducreyi 35000HP 1490483 NP_873059.1 CDS HD0498 NC_002940.2 385828 386427 D phage anti-repressor protein 385828..386427 Haemophilus ducreyi 35000HP 1490484 NP_873060.1 CDS HD0499 NC_002940.2 386438 386647 D hypothetical protein 386438..386647 Haemophilus ducreyi 35000HP 1490485 NP_873061.1 CDS HD0500 NC_002940.2 386776 387198 D hypothetical protein 386776..387198 Haemophilus ducreyi 35000HP 1490486 NP_873062.1 CDS HD0501 NC_002940.2 387199 387834 D N-acetylmuramoyl-L-alanine amidase 387199..387834 Haemophilus ducreyi 35000HP 1490487 NP_873063.1 CDS HD0502 NC_002940.2 387839 388192 D hypothetical protein 387839..388192 Haemophilus ducreyi 35000HP 1490488 NP_873064.1 CDS HD0503 NC_002940.2 388179 388412 D hypothetical protein 388179..388412 Haemophilus ducreyi 35000HP 1490489 NP_873065.1 CDS HD0504 NC_002940.2 388412 388801 D hypothetical protein 388412..388801 Haemophilus ducreyi 35000HP 1490490 NP_873066.1 CDS HD0506 NC_002940.2 388850 389128 D hypothetical protein 388850..389128 Haemophilus ducreyi 35000HP 1490491 NP_873067.1 CDS HD0507 NC_002940.2 389125 389379 D hypothetical protein 389125..389379 Haemophilus ducreyi 35000HP 1490492 NP_873068.1 CDS HD0509 NC_002940.2 389387 389887 D DNA-binding protein 389387..389887 Haemophilus ducreyi 35000HP 1490493 NP_873069.1 CDS HD0510 NC_002940.2 389887 389982 D hypothetical protein 389887..389982 Haemophilus ducreyi 35000HP 1490494 NP_873070.1 CDS HD0514 NC_002940.2 391626 393263 D hypothetical protein 391626..393263 Haemophilus ducreyi 35000HP 1490496 NP_873071.1 CDS HD0515 NC_002940.2 393247 394557 D hypothetical protein 393247..394557 Haemophilus ducreyi 35000HP 1490497 NP_873072.1 CDS mug-2 NC_002940.2 394690 395106 D mu-like bacteriophage G protein 2 394690..395106 Haemophilus ducreyi 35000HP 1490498 NP_873073.1 CDS HD0518 NC_002940.2 395346 396431 D bacteriophage Mu I protein GP32 395346..396431 Haemophilus ducreyi 35000HP 1490499 NP_873074.1 CDS HD0519 NC_002940.2 396431 397354 D bacteriophage mu T protein 396431..397354 Haemophilus ducreyi 35000HP 1490500 NP_873075.1 CDS HD0520 NC_002940.2 397401 397688 D hypothetical protein 397401..397688 Haemophilus ducreyi 35000HP 1490501 NP_873076.1 CDS HD0521 NC_002940.2 397691 398077 D hypothetical protein 397691..398077 Haemophilus ducreyi 35000HP 1490502 NP_873077.1 CDS HD0522 NC_002940.2 398074 398520 D hypothetical protein 398074..398520 Haemophilus ducreyi 35000HP 1490503 NP_873078.1 CDS HD0523 NC_002940.2 398550 399293 D hypothetical protein 398550..399293 Haemophilus ducreyi 35000HP 1490504 NP_873079.1 CDS HD0525 NC_002940.2 399351 399770 D hypothetical protein 399351..399770 Haemophilus ducreyi 35000HP 1490505 NP_873080.1 CDS HD0526 NC_002940.2 399947 400201 R hypothetical protein complement(399947..400201) Haemophilus ducreyi 35000HP 1490506 NP_873081.1 CDS HD0527 NC_002940.2 400216 403575 D tail length tape measure protein 400216..403575 Haemophilus ducreyi 35000HP 1490507 NP_873082.1 CDS HD0529 NC_002940.2 403575 404573 D hypothetical protein 403575..404573 Haemophilus ducreyi 35000HP 1490508 NP_873083.1 CDS HD0530 NC_002940.2 404576 405475 D hypothetical protein 404576..405475 Haemophilus ducreyi 35000HP 1490509 NP_873084.1 CDS HD0531 NC_002940.2 405541 406230 D hypothetical protein 405541..406230 Haemophilus ducreyi 35000HP 1490510 NP_873085.1 CDS HD0532 NC_002940.2 406236 407222 D hypothetical protein 406236..407222 Haemophilus ducreyi 35000HP 1490511 NP_873086.1 CDS HD0533 NC_002940.2 407267 407791 D hypothetical protein 407267..407791 Haemophilus ducreyi 35000HP 1490512 NP_873087.1 CDS HD0534 NC_002940.2 407794 408075 D hypothetical protein 407794..408075 Haemophilus ducreyi 35000HP 1490513 NP_873088.1 CDS HD0535 NC_002940.2 408088 408339 D hypothetical protein 408088..408339 Haemophilus ducreyi 35000HP 1490514 NP_873089.1 CDS HD0536 NC_002940.2 408357 408560 D hypothetical protein 408357..408560 Haemophilus ducreyi 35000HP 1490515 NP_873090.1 CDS HD0538 NC_002940.2 408560 411349 D hypothetical protein 408560..411349 Haemophilus ducreyi 35000HP 1490516 NP_873091.1 CDS HD0539 NC_002940.2 411500 411901 D hypothetical protein 411500..411901 Haemophilus ducreyi 35000HP 1490517 NP_873092.1 CDS HD0540 NC_002940.2 411956 412066 R hypothetical protein complement(411956..412066) Haemophilus ducreyi 35000HP 1490518 NP_873093.1 CDS nagZ NC_002940.2 412800 413834 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(412800..413834) Haemophilus ducreyi 35000HP 1490520 NP_873094.1 CDS mutH NC_002940.2 413865 414545 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(413865..414545) Haemophilus ducreyi 35000HP 1490521 NP_873095.1 CDS lexA NC_002940.2 414589 415224 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(414589..415224) Haemophilus ducreyi 35000HP 1490522 NP_873096.1 CDS plsB NC_002940.2 415387 417822 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 415387..417822 Haemophilus ducreyi 35000HP 1490523 NP_873097.1 CDS purT NC_002940.2 417929 419110 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 417929..419110 Haemophilus ducreyi 35000HP 1490524 NP_873098.1 CDS dnaE NC_002940.2 419178 422654 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(419178..422654) Haemophilus ducreyi 35000HP 1490525 NP_873099.1 CDS HD0552 NC_002940.2 422766 423848 R hypothetical protein complement(422766..423848) Haemophilus ducreyi 35000HP 1490526 NP_873100.1 CDS HD0553 NC_002940.2 423849 424952 R hypothetical protein complement(423849..424952) Haemophilus ducreyi 35000HP 1490527 NP_873101.1 CDS HD0554 NC_002940.2 425042 425197 D hypothetical protein 425042..425197 Haemophilus ducreyi 35000HP 1490528 NP_873102.1 CDS pepA NC_002940.2 425279 426778 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 425279..426778 Haemophilus ducreyi 35000HP 1490529 NP_873103.1 CDS HD0556 NC_002940.2 426848 427477 R hypothetical protein complement(426848..427477) Haemophilus ducreyi 35000HP 1490530 NP_873104.1 CDS HD0557 NC_002940.2 427477 427899 R 6-pyruvoyl tetrahydrobiopterin synthase complement(427477..427899) Haemophilus ducreyi 35000HP 1490531 NP_873105.1 CDS HD0558 NC_002940.2 427892 428566 R hypothetical protein complement(427892..428566) Haemophilus ducreyi 35000HP 1490532 NP_873106.1 CDS HD0560 NC_002940.2 428576 428761 R hypothetical protein complement(428576..428761) Haemophilus ducreyi 35000HP 1490533 NP_873107.1 CDS HD0559 NC_002940.2 428786 428884 D hypothetical protein 428786..428884 Haemophilus ducreyi 35000HP 1490534 NP_873108.1 CDS purM NC_002940.2 428931 429842 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 428931..429842 Haemophilus ducreyi 35000HP 1490535 NP_873109.1 CDS HD0563 NC_002940.2 429944 430231 D hypothetical protein 429944..430231 Haemophilus ducreyi 35000HP 1490536 NP_873110.1 CDS aspA NC_002940.2 430360 431787 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 430360..431787 Haemophilus ducreyi 35000HP 1490537 NP_873111.1 CDS clpB NC_002940.2 431865 434435 R ATP-dependent Clp protease subunit B complement(431865..434435) Haemophilus ducreyi 35000HP 1490538 NP_873112.1 CDS argE NC_002940.2 434657 435679 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(434657..435679) Haemophilus ducreyi 35000HP 1490539 NP_873113.1 CDS HD0567 NC_002940.2 435672 435767 R hypothetical protein complement(435672..435767) Haemophilus ducreyi 35000HP 1490540 NP_873114.1 CDS arcD NC_002940.2 435736 437136 R arginine/ornithine antiporter protein complement(435736..437136) Haemophilus ducreyi 35000HP 1490541 NP_873115.2 CDS metK NC_002940.2 437428 438573 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 437428..438573 Haemophilus ducreyi 35000HP 1490542 NP_873116.1 CDS HD0570 NC_002940.2 438648 439400 D TatD family deoxyribonuclease 438648..439400 Haemophilus ducreyi 35000HP 1490543 NP_873117.1 CDS rep NC_002940.2 439517 441535 R ATP-dependent DNA helicase complement(439517..441535) Haemophilus ducreyi 35000HP 1490544 NP_873118.1 CDS potA NC_002940.2 441823 442938 D functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 441823..442938 Haemophilus ducreyi 35000HP 1490545 NP_873119.1 CDS potB NC_002940.2 442925 443791 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 442925..443791 Haemophilus ducreyi 35000HP 1490546 NP_873120.1 CDS potC NC_002940.2 443791 444558 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 443791..444558 Haemophilus ducreyi 35000HP 1490547 NP_873121.1 CDS prfB NC_002940.2 444654 445709 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(444654..445709) Haemophilus ducreyi 35000HP 1490548 NP_873122.1 CDS selD NC_002940.2 445959 446930 D selenophosphate synthetase; selenide, water dikinase 445959..446930 Haemophilus ducreyi 35000HP 1490549 NP_873123.1 CDS hlp NC_002940.2 448196 448825 R lipoprotein Hlp complement(448196..448825) Haemophilus ducreyi 35000HP 1490551 NP_873124.1 CDS HlpB NC_002940.2 448883 449365 R lipoprotein HlpB complement(448883..449365) Haemophilus ducreyi 35000HP 1490552 NP_873125.1 CDS visC NC_002940.2 449515 450696 R monoxygenase complement(449515..450696) Haemophilus ducreyi 35000HP 1490553 NP_873126.1 CDS HD0584 NC_002940.2 450741 451604 R hypothetical protein complement(450741..451604) Haemophilus ducreyi 35000HP 1490554 NP_873127.1 CDS ptsN NC_002940.2 451624 452148 R PTS system, nitrogen regulatory IIA-like protein complement(451624..452148) Haemophilus ducreyi 35000HP 1490555 NP_873128.1 CDS HD0586 NC_002940.2 452181 452906 R ABC transporter ATP-binding protein complement(452181..452906) Haemophilus ducreyi 35000HP 1490556 NP_873129.1 CDS HD0587 NC_002940.2 452915 453418 R hypothetical protein complement(452915..453418) Haemophilus ducreyi 35000HP 1490557 NP_873130.1 CDS HD0588 NC_002940.2 453451 454032 R hypothetical protein complement(453451..454032) Haemophilus ducreyi 35000HP 1490558 NP_873131.1 CDS HD0589 NC_002940.2 454201 454971 R hypothetical protein complement(454201..454971) Haemophilus ducreyi 35000HP 1490559 NP_873132.1 CDS HD0590 NC_002940.2 454968 455417 R hypothetical protein complement(454968..455417) Haemophilus ducreyi 35000HP 1490560 NP_873133.1 CDS HD0591 NC_002940.2 455487 456071 R hypothetical protein complement(455487..456071) Haemophilus ducreyi 35000HP 1490561 NP_873134.1 CDS HD0592 NC_002940.2 456113 456253 R hypothetical protein complement(456113..456253) Haemophilus ducreyi 35000HP 1490562 NP_873135.1 CDS ruvC NC_002940.2 456253 456831 R Holliday junction nuclease; endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(456253..456831) Haemophilus ducreyi 35000HP 1490563 NP_873136.1 CDS HD0595 NC_002940.2 456914 457447 R hypothetical protein complement(456914..457447) Haemophilus ducreyi 35000HP 1490564 NP_873137.1 CDS HD0596 NC_002940.2 457527 458267 R hypothetical protein complement(457527..458267) Haemophilus ducreyi 35000HP 1490565 NP_873138.1 CDS ntpA NC_002940.2 458348 458803 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(458348..458803) Haemophilus ducreyi 35000HP 1490566 NP_873139.1 CDS HD0597 NC_002940.2 458784 458903 D hypothetical protein 458784..458903 Haemophilus ducreyi 35000HP 1490567 NP_873140.1 CDS aspS NC_002940.2 458909 460678 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(458909..460678) Haemophilus ducreyi 35000HP 1490568 NP_873141.1 CDS HD0600 NC_002940.2 460870 461856 R hypothetical protein complement(460870..461856) Haemophilus ducreyi 35000HP 1490569 NP_873142.1 CDS tbpA NC_002940.2 462241 463209 D thiamine-binding periplasmic protein 462241..463209 Haemophilus ducreyi 35000HP 1490570 NP_873143.1 CDS HD0602 NC_002940.2 463188 463340 D hypothetical protein 463188..463340 Haemophilus ducreyi 35000HP 1490571 NP_873144.1 CDS dksA NC_002940.2 463406 463855 D dosage-dependent DnaK suppressor protein 463406..463855 Haemophilus ducreyi 35000HP 1490572 NP_873145.1 CDS pcnB NC_002940.2 463910 465481 D polynucleotide adenylyltransferase; polyA polymerase 463910..465481 Haemophilus ducreyi 35000HP 1490573 NP_873146.1 CDS folK NC_002940.2 465551 466036 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 465551..466036 Haemophilus ducreyi 35000HP 1490574 NP_873147.1 CDS HD0606 NC_002940.2 466046 466291 R hypothetical protein complement(466046..466291) Haemophilus ducreyi 35000HP 1490575 NP_873148.1 CDS HD0607 NC_002940.2 466284 469007 R hypothetical protein complement(466284..469007) Haemophilus ducreyi 35000HP 1490576 NP_873149.1 CDS HD0608 NC_002940.2 469102 469263 R hypothetical protein complement(469102..469263) Haemophilus ducreyi 35000HP 1490577 NP_873150.1 CDS HD0609 NC_002940.2 469113 469832 R hypothetical protein complement(469113..469832) Haemophilus ducreyi 35000HP 1490578 NP_873151.1 CDS gloA NC_002940.2 469916 470323 D lactoylglutathione lyase 469916..470323 Haemophilus ducreyi 35000HP 1490579 NP_873152.1 CDS rnt NC_002940.2 470479 471123 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 470479..471123 Haemophilus ducreyi 35000HP 1490580 NP_873153.1 CDS fabB NC_002940.2 471320 472537 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(471320..472537) Haemophilus ducreyi 35000HP 1490581 NP_873154.1 CDS cyaA NC_002940.2 472900 475314 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 472900..475314 Haemophilus ducreyi 35000HP 1490582 NP_873155.1 CDS kefB NC_002940.2 475463 477343 D glutathione-regulated potassium-efflux system protein 475463..477343 Haemophilus ducreyi 35000HP 1490583 NP_873156.1 CDS nfrE NC_002940.2 477456 479351 D cytochrome c-type biogenesis protein 477456..479351 Haemophilus ducreyi 35000HP 1490584 NP_873157.1 CDS dsbE2 NC_002940.2 479353 479889 D thiol:disulfide interchange protein DsbE 479353..479889 Haemophilus ducreyi 35000HP 1490585 NP_873158.1 CDS hugZ NC_002940.2 481162 481686 D heme binding protein 481162..481686 Haemophilus ducreyi 35000HP 1490587 NP_873159.1 CDS menF NC_002940.2 481863 483140 R synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase complement(481863..483140) Haemophilus ducreyi 35000HP 1490588 NP_873160.1 CDS HD0622 NC_002940.2 483458 483583 D hypothetical protein 483458..483583 Haemophilus ducreyi 35000HP 1490589 NP_873161.1 CDS priA NC_002940.2 483603 485747 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 483603..485747 Haemophilus ducreyi 35000HP 1490590 NP_873162.1 CDS alr NC_002940.2 485783 486907 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(485783..486907) Haemophilus ducreyi 35000HP 1490591 NP_873163.1 CDS HD0625 NC_002940.2 486894 486986 D hypothetical protein 486894..486986 Haemophilus ducreyi 35000HP 1490592 NP_873164.1 CDS recD NC_002940.2 487021 488967 D exodeoxyribonuclease V subunit alpha 487021..488967 Haemophilus ducreyi 35000HP 1490593 NP_873165.1 CDS HD0627 NC_002940.2 488961 489056 D hypothetical protein 488961..489056 Haemophilus ducreyi 35000HP 1490594 NP_873166.1 CDS HD0629 NC_002940.2 494797 496035 D hypothetical protein 494797..496035 Haemophilus ducreyi 35000HP 1490600 NP_873167.1 CDS dapD NC_002940.2 496188 497012 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 496188..497012 Haemophilus ducreyi 35000HP 1490601 NP_873168.1 CDS arsC NC_002940.2 497057 497401 D arsenate reductase 497057..497401 Haemophilus ducreyi 35000HP 1490602 NP_873169.1 CDS aroQ NC_002940.2 497410 497844 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 497410..497844 Haemophilus ducreyi 35000HP 1490603 NP_873170.1 CDS accB NC_002940.2 498075 498533 D biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) 498075..498533 Haemophilus ducreyi 35000HP 1490604 NP_873171.1 CDS accC NC_002940.2 498720 500063 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 498720..500063 Haemophilus ducreyi 35000HP 1490605 NP_873172.1 CDS mobAB NC_002940.2 500108 501208 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; MobB is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB complement(500108..501208) Haemophilus ducreyi 35000HP 1490606 NP_873173.1 CDS HD0637 NC_002940.2 501292 501561 D hypothetical protein 501292..501561 Haemophilus ducreyi 35000HP 1490607 NP_873174.1 CDS dsbA NC_002940.2 501611 502249 D thiol:disulfide interchange protein 501611..502249 Haemophilus ducreyi 35000HP 1490608 NP_873175.1 CDS HD0639 NC_002940.2 502293 503138 R cell division protein complement(502293..503138) Haemophilus ducreyi 35000HP 1490609 NP_873176.1 CDS HD0640 NC_002940.2 503263 504018 R SAM-dependent methyltransferase complement(503263..504018) Haemophilus ducreyi 35000HP 1490610 NP_873177.1 CDS HD0641 NC_002940.2 504028 504708 R D,D-carboxypeptidase-related protein complement(504028..504708) Haemophilus ducreyi 35000HP 1490611 NP_873178.1 CDS dapE NC_002940.2 504718 505848 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(504718..505848) Haemophilus ducreyi 35000HP 1490612 NP_873179.1 CDS HD0643 NC_002940.2 505932 506285 R hypothetical protein complement(505932..506285) Haemophilus ducreyi 35000HP 1490613 NP_873180.1 CDS folP NC_002940.2 506294 507139 R dihydropteroate synthase complement(506294..507139) Haemophilus ducreyi 35000HP 1490614 NP_873181.1 CDS rluC NC_002940.2 507141 508103 R catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C complement(507141..508103) Haemophilus ducreyi 35000HP 1490615 NP_873182.1 CDS HD0646 NC_002940.2 508270 510765 D hypothetical protein 508270..510765 Haemophilus ducreyi 35000HP 1490616 NP_873183.1 CDS HD0647 NC_002940.2 510876 511844 D hypothetical protein 510876..511844 Haemophilus ducreyi 35000HP 1490617 NP_873184.1 CDS tnaB NC_002940.2 511908 513107 R tryptophan-specific transport protein complement(511908..513107) Haemophilus ducreyi 35000HP 1490618 NP_873185.1 CDS psd NC_002940.2 513166 514059 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(513166..514059) Haemophilus ducreyi 35000HP 1490619 NP_873186.1 CDS HD0650 NC_002940.2 514212 514571 R hypothetical protein complement(514212..514571) Haemophilus ducreyi 35000HP 1490620 NP_873187.1 CDS oapA NC_002940.2 514878 516107 D opacity associated protein A 514878..516107 Haemophilus ducreyi 35000HP 1490621 NP_873188.1 CDS oapB NC_002940.2 516198 516614 D opacity associated protein B 516198..516614 Haemophilus ducreyi 35000HP 1490622 NP_873189.1 CDS waaF NC_002940.2 516830 517735 D ADP-heptose--lipooligosaccharide heptosyltransferase II 516830..517735 Haemophilus ducreyi 35000HP 1490623 NP_873190.1 CDS HD0654 NC_002940.2 517686 517901 R hypothetical protein complement(517686..517901) Haemophilus ducreyi 35000HP 1490624 NP_873191.1 CDS rpsL NC_002940.2 517884 518258 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 517884..518258 Haemophilus ducreyi 35000HP 1490625 NP_873192.1 CDS rpsG NC_002940.2 518395 518865 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 518395..518865 Haemophilus ducreyi 35000HP 1490626 NP_873193.1 CDS fusA NC_002940.2 518964 521069 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 518964..521069 Haemophilus ducreyi 35000HP 1490627 NP_873194.1 CDS tuf NC_002940.2 521131 522315 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 521131..522315 Haemophilus ducreyi 35000HP 1490628 NP_873195.1 CDS cysE NC_002940.2 522487 523302 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(522487..523302) Haemophilus ducreyi 35000HP 1490629 NP_873196.1 CDS gpsA NC_002940.2 523314 524324 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(523314..524324) Haemophilus ducreyi 35000HP 1490630 NP_873197.1 CDS secB NC_002940.2 524451 524969 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(524451..524969) Haemophilus ducreyi 35000HP 1490631 NP_873198.1 CDS HD0662 NC_002940.2 524989 525435 R rhodanese-related sulfurtransferase complement(524989..525435) Haemophilus ducreyi 35000HP 1490632 NP_873199.1 CDS tig NC_002940.2 525554 526855 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(525554..526855) Haemophilus ducreyi 35000HP 1490633 NP_873200.1 CDS HD0664 NC_002940.2 526948 527049 R hypothetical protein complement(526948..527049) Haemophilus ducreyi 35000HP 1490634 NP_873201.1 CDS HD0665 NC_002940.2 527074 527517 R LysM domain/BON superfamily protein complement(527074..527517) Haemophilus ducreyi 35000HP 1490635 NP_873202.1 CDS holC NC_002940.2 527767 528228 D binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 527767..528228 Haemophilus ducreyi 35000HP 1490636 NP_873203.1 CDS HD0668 NC_002940.2 528291 529163 D hypothetical protein 528291..529163 Haemophilus ducreyi 35000HP 1490637 NP_873204.1 CDS valS NC_002940.2 529205 532090 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 529205..532090 Haemophilus ducreyi 35000HP 1490638 NP_873205.1 CDS panF NC_002940.2 532200 533627 R mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter complement(532200..533627) Haemophilus ducreyi 35000HP 1490639 NP_873206.1 CDS HD0673 NC_002940.2 533620 533868 R hypothetical protein complement(533620..533868) Haemophilus ducreyi 35000HP 1490640 NP_873207.1 CDS metJ NC_002940.2 533928 534245 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(533928..534245) Haemophilus ducreyi 35000HP 1490641 NP_873208.1 CDS vacJ NC_002940.2 534438 535181 D VacJ lipoprotein 534438..535181 Haemophilus ducreyi 35000HP 1490642 NP_873209.1 CDS gcr NC_002940.2 535390 537360 D site-specific recombinase 535390..537360 Haemophilus ducreyi 35000HP 1490643 NP_873210.1 CDS HD0680 NC_002940.2 537432 538109 R hypothetical protein complement(537432..538109) Haemophilus ducreyi 35000HP 1490644 NP_873211.1 CDS HD0681 NC_002940.2 538081 538182 R hypothetical protein complement(538081..538182) Haemophilus ducreyi 35000HP 1490645 NP_873212.1 CDS HD0682 NC_002940.2 538216 538950 R hypothetical protein complement(538216..538950) Haemophilus ducreyi 35000HP 1490646 NP_873213.1 CDS menA NC_002940.2 539049 539957 D catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 539049..539957 Haemophilus ducreyi 35000HP 1490647 NP_873214.1 CDS HD0684 NC_002940.2 540037 540381 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(540037..540381) Haemophilus ducreyi 35000HP 1490648 NP_873215.1 CDS neuA NC_002940.2 540594 541283 D cytidine 5'monophosphate N-acetylneuraminic acid synthetase; acylneuraminate cytidylyltransferase 540594..541283 Haemophilus ducreyi 35000HP 1490649 NP_873216.1 CDS lst NC_002940.2 541332 542219 D lipooligosaccharide sialyltransferase 541332..542219 Haemophilus ducreyi 35000HP 1490650 NP_873217.1 CDS rmlB NC_002940.2 542311 543351 D dTDP-D-glucose 4,6-dehydratase 542311..543351 Haemophilus ducreyi 35000HP 1490651 NP_873218.1 CDS rmlA NC_002940.2 543373 544260 D dTDP-glucose synthase; glucose-1-phosphate thymidyltransferase; dTDP-glucose phosphorylase 543373..544260 Haemophilus ducreyi 35000HP 1490652 NP_873219.1 CDS rpsU NC_002940.2 544413 544628 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 544413..544628 Haemophilus ducreyi 35000HP 1490653 NP_873220.1 CDS dnaG NC_002940.2 544816 546555 D synthesizes RNA primers at the replication forks; DNA primase 544816..546555 Haemophilus ducreyi 35000HP 1490654 NP_873221.1 CDS rpoD NC_002940.2 546696 548537 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 546696..548537 Haemophilus ducreyi 35000HP 1490655 NP_873222.1 CDS tyrS NC_002940.2 548683 549873 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(548683..549873) Haemophilus ducreyi 35000HP 1490656 NP_873223.1 CDS HD0694 NC_002940.2 550101 550223 R hypothetical protein complement(550101..550223) Haemophilus ducreyi 35000HP 1490657 NP_873224.1 CDS vacB NC_002940.2 550216 552573 R ribonuclease r, virulence associated protein VacB-like protein complement(550216..552573) Haemophilus ducreyi 35000HP 1490658 NP_873225.1 CDS HD0697 NC_002940.2 552635 553153 R thioredoxin-like protein complement(552635..553153) Haemophilus ducreyi 35000HP 1490659 NP_873226.1 CDS HD0698 NC_002940.2 553155 553781 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(553155..553781) Haemophilus ducreyi 35000HP 1490660 NP_873227.1 CDS oxyR NC_002940.2 553774 554667 R Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR complement(553774..554667) Haemophilus ducreyi 35000HP 1490661 NP_873228.1 CDS HD0700 NC_002940.2 554795 555529 D peroxiredoxin/glutaredoxin family protein 554795..555529 Haemophilus ducreyi 35000HP 1490662 NP_873229.1 CDS fbp NC_002940.2 555639 556643 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(555639..556643) Haemophilus ducreyi 35000HP 1490663 NP_873230.1 CDS mpl NC_002940.2 556767 558146 D murein peptide ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl- meso-diaminopimelate ligase 556767..558146 Haemophilus ducreyi 35000HP 1490664 NP_873231.1 CDS HD0704 NC_002940.2 558164 558355 R hypothetical protein complement(558164..558355) Haemophilus ducreyi 35000HP 1490665 NP_873232.1 CDS ispB NC_002940.2 558367 559350 D octaprenyl-diphosphate synthase; octaprenyl pyrophosphate synthetase 558367..559350 Haemophilus ducreyi 35000HP 1490666 NP_873233.1 CDS HD0706 NC_002940.2 559387 560136 D hypothetical protein 559387..560136 Haemophilus ducreyi 35000HP 1490667 NP_873234.1 CDS fabD NC_002940.2 560270 561205 D ACP S-malonyltransferase 560270..561205 Haemophilus ducreyi 35000HP 1490668 NP_873235.1 CDS fabG NC_002940.2 561260 561916 D 3-oxoacyl-ACP reductase 561260..561916 Haemophilus ducreyi 35000HP 1490669 NP_873236.1 CDS brnQ NC_002940.2 562116 563420 D branched-chain amino acid carrier protein 562116..563420 Haemophilus ducreyi 35000HP 1490670 NP_873237.1 CDS mutM NC_002940.2 563452 564276 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 563452..564276 Haemophilus ducreyi 35000HP 1490671 NP_873238.1 CDS HD0713 NC_002940.2 564342 564704 R hypothetical protein complement(564342..564704) Haemophilus ducreyi 35000HP 1490672 NP_873239.1 CDS tatC NC_002940.2 564771 565520 R Sec-independent protein secretion pathway component TatC complement(564771..565520) Haemophilus ducreyi 35000HP 1490673 NP_873240.1 CDS tatB NC_002940.2 565510 565998 R mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase complement(565510..565998) Haemophilus ducreyi 35000HP 1490674 NP_873241.1 CDS tatA NC_002940.2 566002 566226 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A complement(566002..566226) Haemophilus ducreyi 35000HP 1490675 NP_873242.1 CDS ubiB NC_002940.2 566355 567983 R ubiquinone biosynthesis protein complement(566355..567983) Haemophilus ducreyi 35000HP 1490676 NP_873243.1 CDS HD0718 NC_002940.2 567980 568618 R hypothetical protein complement(567980..568618) Haemophilus ducreyi 35000HP 1490677 NP_873244.1 CDS ubiE NC_002940.2 568650 569429 R ubiquinone/menaquinone biosynthesis methyltransferase complement(568650..569429) Haemophilus ducreyi 35000HP 1490678 NP_873245.1 CDS HD0720 NC_002940.2 569440 569541 R hypothetical protein complement(569440..569541) Haemophilus ducreyi 35000HP 1490679 NP_873246.1 CDS corA NC_002940.2 569718 570671 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 569718..570671 Haemophilus ducreyi 35000HP 1490680 NP_873247.1 CDS HD0722 NC_002940.2 570808 570963 R hypothetical protein complement(570808..570963) Haemophilus ducreyi 35000HP 1490682 NP_873248.1 CDS trmA NC_002940.2 570980 572089 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(570980..572089) Haemophilus ducreyi 35000HP 1490683 NP_873249.1 CDS HD0725 NC_002940.2 572209 572541 R hypothetical protein complement(572209..572541) Haemophilus ducreyi 35000HP 1490684 NP_873250.1 CDS ddc NC_002940.2 572758 574293 R L-2,4-diaminobutyrate decarboxylase complement(572758..574293) Haemophilus ducreyi 35000HP 1490685 NP_873251.1 CDS HD0727 NC_002940.2 574330 574449 D hypothetical protein 574330..574449 Haemophilus ducreyi 35000HP 1490686 NP_873252.1 CDS dat NC_002940.2 574450 575814 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(574450..575814) Haemophilus ducreyi 35000HP 1490687 NP_873253.1 CDS rpmG NC_002940.2 576143 576313 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(576143..576313) Haemophilus ducreyi 35000HP 1490688 NP_873254.1 CDS rpmB NC_002940.2 576325 576561 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(576325..576561) Haemophilus ducreyi 35000HP 1490689 NP_873255.1 CDS radC NC_002940.2 576722 577393 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(576722..577393) Haemophilus ducreyi 35000HP 1490690 NP_873256.1 CDS dfp NC_002940.2 577607 578851 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 577607..578851 Haemophilus ducreyi 35000HP 1490691 NP_873257.1 CDS dut NC_002940.2 578835 579293 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 578835..579293 Haemophilus ducreyi 35000HP 1490692 NP_873258.1 CDS slmA NC_002940.2 579397 580005 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 579397..580005 Haemophilus ducreyi 35000HP 1490693 NP_873259.1 CDS HD0737 NC_002940.2 580014 580232 D hypothetical protein 580014..580232 Haemophilus ducreyi 35000HP 1490694 NP_873260.1 CDS crp NC_002940.2 580317 581000 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 580317..581000 Haemophilus ducreyi 35000HP 1490695 NP_873261.1 CDS hflX NC_002940.2 581070 582419 R GTP-binding protein HflX complement(581070..582419) Haemophilus ducreyi 35000HP 1490696 NP_873262.1 CDS hfq NC_002940.2 582457 582762 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(582457..582762) Haemophilus ducreyi 35000HP 1490697 NP_873263.1 CDS miaA NC_002940.2 582837 583778 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(582837..583778) Haemophilus ducreyi 35000HP 1490698 NP_873264.1 CDS mutL NC_002940.2 583842 585638 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(583842..585638) Haemophilus ducreyi 35000HP 1490699 NP_873265.1 CDS rbn NC_002940.2 585746 586573 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 585746..586573 Haemophilus ducreyi 35000HP 1490700 NP_873266.1 CDS dtd NC_002940.2 586563 587009 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 586563..587009 Haemophilus ducreyi 35000HP 1490701 NP_873267.1 CDS HD0746 NC_002940.2 587075 587614 R possible xylanase A; endo-1,4-beta-xylanase A complement(587075..587614) Haemophilus ducreyi 35000HP 1490702 NP_873268.1 CDS nhaA NC_002940.2 587760 588944 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(587760..588944) Haemophilus ducreyi 35000HP 1490703 NP_873269.1 CDS HD0748 NC_002940.2 589116 589856 D hypothetical protein 589116..589856 Haemophilus ducreyi 35000HP 1490704 NP_873270.1 CDS icc NC_002940.2 590081 590908 D cyclic 3',5'-adenosine monophosphate phosphodiesterase 590081..590908 Haemophilus ducreyi 35000HP 1490705 NP_873271.1 CDS glnA NC_002940.2 591128 592558 D glutamine synthetase; glutamate--ammonia ligase 591128..592558 Haemophilus ducreyi 35000HP 1490706 NP_873272.1 CDS HD0751 NC_002940.2 592591 592689 R hypothetical protein complement(592591..592689) Haemophilus ducreyi 35000HP 1490707 NP_873273.1 CDS rnpA NC_002940.2 592839 593210 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(592839..593210) Haemophilus ducreyi 35000HP 1490708 NP_873274.1 CDS rpmH NC_002940.2 593243 593377 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(593243..593377) Haemophilus ducreyi 35000HP 1490709 NP_873275.1 CDS HD0754 NC_002940.2 593415 593516 R hypothetical protein complement(593415..593516) Haemophilus ducreyi 35000HP 1490710 NP_873276.1 CDS nlpD NC_002940.2 593671 594789 R lipoprotein complement(593671..594789) Haemophilus ducreyi 35000HP 1490711 NP_873277.1 CDS HD0756 NC_002940.2 594874 595452 R lipoprotein complement(594874..595452) Haemophilus ducreyi 35000HP 1490712 NP_873278.1 CDS HD0757 NC_002940.2 595464 596048 R hypothetical protein complement(595464..596048) Haemophilus ducreyi 35000HP 1490713 NP_873279.1 CDS surE NC_002940.2 596049 596810 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(596049..596810) Haemophilus ducreyi 35000HP 1490714 NP_873280.1 CDS tpiA NC_002940.2 598103 598873 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 598103..598873 Haemophilus ducreyi 35000HP 1490716 NP_873281.1 CDS manA NC_002940.2 598978 600189 R mannose-6-phosphate isomerase complement(598978..600189) Haemophilus ducreyi 35000HP 1490717 NP_873282.1 CDS manZ NC_002940.2 600349 601200 R hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID complement(600349..601200) Haemophilus ducreyi 35000HP 1490718 NP_873283.1 CDS manY NC_002940.2 601200 602000 R mannose-specific phosphotransferase system IIC component complement(601200..602000) Haemophilus ducreyi 35000HP 1490719 NP_873284.1 CDS manX NC_002940.2 602010 602990 R mannose-specific phosphotransferase IIAB component complement(602010..602990) Haemophilus ducreyi 35000HP 1490720 NP_873285.1 CDS dsrA NC_002940.2 603357 604130 D serum resistance protein DrsA 603357..604130 Haemophilus ducreyi 35000HP 1490721 NP_873286.1 CDS HD0770 NC_002940.2 604278 605600 R hypothetical protein complement(604278..605600) Haemophilus ducreyi 35000HP 1490722 NP_873287.1 CDS HD0771 NC_002940.2 605719 606243 D hypothetical protein 605719..606243 Haemophilus ducreyi 35000HP 1490723 NP_873288.1 CDS rpmF NC_002940.2 606262 606432 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 606262..606432 Haemophilus ducreyi 35000HP 1490724 NP_873289.1 CDS plsX NC_002940.2 606454 607485 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 606454..607485 Haemophilus ducreyi 35000HP 1490725 NP_873290.1 CDS fabH NC_002940.2 607497 608447 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 607497..608447 Haemophilus ducreyi 35000HP 1490726 NP_873291.1 CDS trmB NC_002940.2 608457 609206 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 608457..609206 Haemophilus ducreyi 35000HP 1490727 NP_873292.1 CDS HD0776 NC_002940.2 609287 609628 D hypothetical protein 609287..609628 Haemophilus ducreyi 35000HP 1490728 NP_873293.1 CDS HD0777 NC_002940.2 609767 610300 D hypothetical protein 609767..610300 Haemophilus ducreyi 35000HP 1490729 NP_873294.1 CDS HD0778 NC_002940.2 610300 610593 D hypothetical protein 610300..610593 Haemophilus ducreyi 35000HP 1490730 NP_873295.1 CDS phnA NC_002940.2 612267 612590 R alkylphosphonate uptake protein complement(612267..612590) Haemophilus ducreyi 35000HP 1490732 NP_873296.1 CDS oadB NC_002940.2 612707 614014 R oxaloacetate decarboxylase subunit beta complement(612707..614014) Haemophilus ducreyi 35000HP 1490733 NP_873297.1 CDS oadA NC_002940.2 614026 615831 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(614026..615831) Haemophilus ducreyi 35000HP 1490734 NP_873298.1 CDS oadG NC_002940.2 615841 616098 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(615841..616098) Haemophilus ducreyi 35000HP 1490735 NP_873299.1 CDS yfgE NC_002940.2 622394 623104 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 622394..623104 Haemophilus ducreyi 35000HP 1490742 NP_873300.1 CDS ccmA NC_002940.2 623243 623875 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 623243..623875 Haemophilus ducreyi 35000HP 1490743 NP_873301.1 CDS ccmB NC_002940.2 623937 624599 D heme exporter protein B; cytochrome c-type biogenesis protein 623937..624599 Haemophilus ducreyi 35000HP 1490744 NP_873302.1 CDS ccmC NC_002940.2 624661 625398 D heme exporter protein C; cytochrome c-type biogenesis protein 624661..625398 Haemophilus ducreyi 35000HP 1490745 NP_873303.1 CDS ccmD NC_002940.2 625421 625624 D heme exporter protein D; cytochrome c maturation protein D 625421..625624 Haemophilus ducreyi 35000HP 1490746 NP_873304.1 CDS ccmE NC_002940.2 625806 626351 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 625806..626351 Haemophilus ducreyi 35000HP 1490747 NP_873305.1 CDS ccmF NC_002940.2 626351 628309 D cytochrome c-type biogenesis protein 626351..628309 Haemophilus ducreyi 35000HP 1490748 NP_873306.1 CDS HD0793 NC_002940.2 628456 629472 D transport system permease 628456..629472 Haemophilus ducreyi 35000HP 1490749 NP_873307.1 CDS HD0794 NC_002940.2 629444 629698 D hypothetical protein 629444..629698 Haemophilus ducreyi 35000HP 1490750 NP_873308.1 CDS HD0795 NC_002940.2 629673 630878 D thiosulfate sulfur transferase 629673..630878 Haemophilus ducreyi 35000HP 1490751 NP_873309.1 CDS HD0798 NC_002940.2 632928 634346 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 632928..634346 Haemophilus ducreyi 35000HP 1490755 NP_873310.1 CDS HD0799 NC_002940.2 634410 634547 D hypothetical protein 634410..634547 Haemophilus ducreyi 35000HP 1490756 NP_873311.1 CDS HD0800 NC_002940.2 634617 635207 R hypothetical protein complement(634617..635207) Haemophilus ducreyi 35000HP 1490757 NP_873312.1 CDS HD0801 NC_002940.2 635226 635807 R phosphoheptose isomerase complement(635226..635807) Haemophilus ducreyi 35000HP 1490758 NP_873313.1 CDS HD0802 NC_002940.2 635818 636198 R hypothetical protein complement(635818..636198) Haemophilus ducreyi 35000HP 1490759 NP_873314.1 CDS lppC NC_002940.2 636173 637924 R lipoprotein C complement(636173..637924) Haemophilus ducreyi 35000HP 1490760 NP_873315.1 CDS HD0804 NC_002940.2 637997 638851 D hypothetical protein 637997..638851 Haemophilus ducreyi 35000HP 1490761 NP_873316.1 CDS HD0805 NC_002940.2 638903 639706 R hypothetical protein complement(638903..639706) Haemophilus ducreyi 35000HP 1490762 NP_873317.1 CDS HD0806 NC_002940.2 639852 640421 R hypothetical protein complement(639852..640421) Haemophilus ducreyi 35000HP 1490763 NP_873318.1 CDS dipZ NC_002940.2 640469 642190 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(640469..642190) Haemophilus ducreyi 35000HP 1490764 NP_873319.1 CDS HD0809 NC_002940.2 642241 642357 D hypothetical protein 642241..642357 Haemophilus ducreyi 35000HP 1490765 NP_873320.1 CDS HD0810 NC_002940.2 642354 643316 R sodium/calcium exchange protein complement(642354..643316) Haemophilus ducreyi 35000HP 1490766 NP_873321.1 CDS artP NC_002940.2 643486 644220 D With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding protein 643486..644220 Haemophilus ducreyi 35000HP 1490767 NP_873322.1 CDS artI NC_002940.2 644257 644976 D arginine ABC transporter substrate-binding protein 644257..644976 Haemophilus ducreyi 35000HP 1490768 NP_873323.1 CDS artQ NC_002940.2 644981 645646 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 644981..645646 Haemophilus ducreyi 35000HP 1490769 NP_873324.1 CDS artM NC_002940.2 645652 646335 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 645652..646335 Haemophilus ducreyi 35000HP 1490770 NP_873325.1 CDS recN NC_002940.2 646402 648081 R DNA repair protein complement(646402..648081) Haemophilus ducreyi 35000HP 1490771 NP_873326.1 CDS lpxC NC_002940.2 648238 649158 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(648238..649158) Haemophilus ducreyi 35000HP 1490772 NP_873327.1 CDS ftsZ NC_002940.2 649189 650379 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(649189..650379) Haemophilus ducreyi 35000HP 1490773 NP_873328.1 CDS ftsA NC_002940.2 650417 651697 R cell division protein FtsA complement(650417..651697) Haemophilus ducreyi 35000HP 1490774 NP_873329.1 CDS ftsQ NC_002940.2 651728 652519 R cell division protein FtsQ complement(651728..652519) Haemophilus ducreyi 35000HP 1490775 NP_873330.1 CDS ddl NC_002940.2 652519 653430 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(652519..653430) Haemophilus ducreyi 35000HP 1490776 NP_873331.1 CDS murC NC_002940.2 653450 654877 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(653450..654877) Haemophilus ducreyi 35000HP 1490777 NP_873332.1 CDS murG NC_002940.2 654912 655979 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(654912..655979) Haemophilus ducreyi 35000HP 1490778 NP_873333.1 CDS adk NC_002940.2 656284 656931 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(656284..656931) Haemophilus ducreyi 35000HP 1490779 NP_873334.1 CDS ampG NC_002940.2 657033 658316 R permease and signal transducer AmpG complement(657033..658316) Haemophilus ducreyi 35000HP 1490780 NP_873335.1 CDS galE NC_002940.2 658377 659393 R UDP-glucose-4-epimerase complement(658377..659393) Haemophilus ducreyi 35000HP 1490781 NP_873336.1 CDS ligA NC_002940.2 659456 661516 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(659456..661516) Haemophilus ducreyi 35000HP 1490782 NP_873337.1 CDS zipA NC_002940.2 661589 662593 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(661589..662593) Haemophilus ducreyi 35000HP 1490783 NP_873338.1 CDS cysZ NC_002940.2 662703 663590 D role in sulfur assimilation; sulfate transport protein CysZ 662703..663590 Haemophilus ducreyi 35000HP 1490784 NP_873339.1 CDS gnd NC_002940.2 663662 665116 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(663662..665116) Haemophilus ducreyi 35000HP 1490785 NP_873340.1 CDS HD0835 NC_002940.2 665230 666555 R transporter complement(665230..666555) Haemophilus ducreyi 35000HP 1490786 NP_873341.1 CDS pgl NC_002940.2 666578 667279 R catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase complement(666578..667279) Haemophilus ducreyi 35000HP 1490787 NP_873342.1 CDS zwf NC_002940.2 667336 668823 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(667336..668823) Haemophilus ducreyi 35000HP 1490788 NP_873343.1 CDS cysQ NC_002940.2 668892 669704 R 3'-phosphoadenosine 5'-phosphosulfate 3'-phosphatase complement(668892..669704) Haemophilus ducreyi 35000HP 1490789 NP_873344.1 CDS nudE NC_002940.2 669718 670263 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(669718..670263) Haemophilus ducreyi 35000HP 1490790 NP_873345.1 CDS hslR NC_002940.2 670384 670803 D heat shock protein 15 670384..670803 Haemophilus ducreyi 35000HP 1490791 NP_873346.1 CDS hslO NC_002940.2 670876 671769 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 670876..671769 Haemophilus ducreyi 35000HP 1490792 NP_873347.1 CDS SohB NC_002940.2 671836 672891 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(671836..672891) Haemophilus ducreyi 35000HP 1490793 NP_873348.1 CDS lpxB NC_002940.2 672926 674098 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(672926..674098) Haemophilus ducreyi 35000HP 1490794 NP_873349.1 CDS asd NC_002940.2 674212 675330 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(674212..675330) Haemophilus ducreyi 35000HP 1490795 NP_873350.1 CDS sodC NC_002940.2 675522 676121 D superoxide dismutase [Cu-Zn] 675522..676121 Haemophilus ducreyi 35000HP 1490796 NP_873351.1 CDS recF NC_002940.2 676162 677244 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(676162..677244) Haemophilus ducreyi 35000HP 1490797 NP_873352.1 CDS dnaN NC_002940.2 677306 678409 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(677306..678409) Haemophilus ducreyi 35000HP 1490798 NP_873353.1 CDS dnaA NC_002940.2 678427 679773 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(678427..679773) Haemophilus ducreyi 35000HP 1490799 NP_873354.1 CDS HD0852 NC_002940.2 679999 681654 D hypothetical protein 679999..681654 Haemophilus ducreyi 35000HP 1490800 NP_873355.1 CDS prfA NC_002940.2 681783 682865 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 681783..682865 Haemophilus ducreyi 35000HP 1490801 NP_873356.1 CDS hemK NC_002940.2 682982 683854 D protein-glutamine N-methyl transferase 682982..683854 Haemophilus ducreyi 35000HP 1490802 NP_873357.1 CDS HD0856 NC_002940.2 683854 684720 D hypothetical protein 683854..684720 Haemophilus ducreyi 35000HP 1490803 NP_873358.1 CDS kdsA NC_002940.2 684749 685609 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 684749..685609 Haemophilus ducreyi 35000HP 1490804 NP_873359.1 CDS lolC NC_002940.2 685615 686787 D lipoprotein releasing system transmembrane protein 685615..686787 Haemophilus ducreyi 35000HP 1490805 NP_873360.1 CDS lolD NC_002940.2 686872 687552 D lipoprotein releasing system ATP-binding protein 686872..687552 Haemophilus ducreyi 35000HP 1490806 NP_873361.1 CDS lolE NC_002940.2 687552 688802 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 687552..688802 Haemophilus ducreyi 35000HP 1490807 NP_873362.1 CDS sapF NC_002940.2 688854 689648 R peptide transport system ATP-binding protein SapF complement(688854..689648) Haemophilus ducreyi 35000HP 1490808 NP_873363.1 CDS fbaA NC_002940.2 689748 690824 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(689748..690824) Haemophilus ducreyi 35000HP 1490809 NP_873364.1 CDS pgk NC_002940.2 690932 692107 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(690932..692107) Haemophilus ducreyi 35000HP 1490810 NP_873365.1 CDS HD0866 NC_002940.2 692232 693506 R sodium/sulfate transporter complement(692232..693506) Haemophilus ducreyi 35000HP 1490811 NP_873366.1 CDS HD0868 NC_002940.2 693762 694103 R hypothetical protein complement(693762..694103) Haemophilus ducreyi 35000HP 1490812 NP_873367.1 CDS HD0869 NC_002940.2 694092 694202 D hypothetical protein 694092..694202 Haemophilus ducreyi 35000HP 1490813 NP_873368.1 CDS parE NC_002940.2 694332 696248 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(694332..696248) Haemophilus ducreyi 35000HP 1490814 NP_873369.1 CDS HD0872 NC_002940.2 696407 696574 D hypothetical protein 696407..696574 Haemophilus ducreyi 35000HP 1490815 NP_873370.1 CDS pheA NC_002940.2 696571 697734 R includes: chorismate mutase; prephenate dehydratase; P-protein complement(696571..697734) Haemophilus ducreyi 35000HP 1490816 NP_873371.1 CDS ndh NC_002940.2 697916 699202 R NADH dehydrogenase complement(697916..699202) Haemophilus ducreyi 35000HP 1490817 NP_873372.1 CDS sprT NC_002940.2 699285 699785 R hypothetical protein complement(699285..699785) Haemophilus ducreyi 35000HP 1490818 NP_873373.1 CDS HD0876 NC_002940.2 699752 700591 R ribonuclease complement(699752..700591) Haemophilus ducreyi 35000HP 1490819 NP_873374.1 CDS HD0877 NC_002940.2 700628 700738 R hypothetical protein complement(700628..700738) Haemophilus ducreyi 35000HP 1490820 NP_873375.1 CDS sppA NC_002940.2 700711 702567 R protease IV, signal peptide peptidase complement(700711..702567) Haemophilus ducreyi 35000HP 1490821 NP_873376.1 CDS HD0879 NC_002940.2 702679 703248 D hypothetical protein 702679..703248 Haemophilus ducreyi 35000HP 1490822 NP_873377.1 CDS HD0880 NC_002940.2 703261 704082 D dehydrogenase 703261..704082 Haemophilus ducreyi 35000HP 1490823 NP_873378.1 CDS HD0881 NC_002940.2 704079 704825 R hypothetical protein complement(704079..704825) Haemophilus ducreyi 35000HP 1490824 NP_873379.1 CDS lsgA NC_002940.2 704960 706162 D lipopolysaccharide biosynthesis protein 704960..706162 Haemophilus ducreyi 35000HP 1490825 NP_873380.1 CDS lsgD NC_002940.2 706181 706975 D lipooligosaccharide N-acetylglucosamine glycosyltransferase 706181..706975 Haemophilus ducreyi 35000HP 1490826 NP_873381.1 CDS HD0884 NC_002940.2 706956 708140 D hypothetical protein 706956..708140 Haemophilus ducreyi 35000HP 1490827 NP_873382.1 CDS lsgE NC_002940.2 708150 709031 D lipooligosaccharide galactosyltransferase 708150..709031 Haemophilus ducreyi 35000HP 1490828 NP_873383.1 CDS lsgF NC_002940.2 709031 709831 D lipooligosaccharide galactosyltransferase 709031..709831 Haemophilus ducreyi 35000HP 1490829 NP_873384.1 CDS HD0887 NC_002940.2 710136 711404 D nucleoside transporter 710136..711404 Haemophilus ducreyi 35000HP 1490830 NP_873385.1 CDS deoC NC_002940.2 711556 712332 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 711556..712332 Haemophilus ducreyi 35000HP 1490831 NP_873386.1 CDS deoD NC_002940.2 712408 713124 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 712408..713124 Haemophilus ducreyi 35000HP 1490832 NP_873387.1 CDS argC NC_002940.2 713264 714208 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 713264..714208 Haemophilus ducreyi 35000HP 1490833 NP_873388.1 CDS argB NC_002940.2 714218 715072 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 714218..715072 Haemophilus ducreyi 35000HP 1490834 NP_873389.1 CDS argD NC_002940.2 715069 716253 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 715069..716253 Haemophilus ducreyi 35000HP 1490835 NP_873390.1 CDS rho NC_002940.2 716334 717596 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(716334..717596) Haemophilus ducreyi 35000HP 1490836 NP_873391.1 CDS cysK NC_002940.2 717778 718728 R cysteine synthase; O-acetylserine sulfhydrylase complement(717778..718728) Haemophilus ducreyi 35000HP 1490837 NP_873392.1 CDS HD0897 NC_002940.2 719286 720140 R integrase/recombinase complement(719286..720140) Haemophilus ducreyi 35000HP 1490839 NP_873393.1 CDS HD0898 NC_002940.2 720211 720900 R hypothetical protein complement(720211..720900) Haemophilus ducreyi 35000HP 1490840 NP_873394.1 CDS HD0899 NC_002940.2 720977 721417 R hypothetical protein complement(720977..721417) Haemophilus ducreyi 35000HP 1490841 NP_873395.1 CDS HD0900 NC_002940.2 721421 722074 R hypothetical protein complement(721421..722074) Haemophilus ducreyi 35000HP 1490842 NP_873396.1 CDS HD0901 NC_002940.2 722364 722606 D hypothetical protein 722364..722606 Haemophilus ducreyi 35000HP 1490843 NP_873397.1 CDS cdtA NC_002940.2 723239 723910 D cytolethal distending toxin protein A 723239..723910 Haemophilus ducreyi 35000HP 1490844 NP_873398.1 CDS cdtB NC_002940.2 723925 724776 D cytolethal distending toxin protein B 723925..724776 Haemophilus ducreyi 35000HP 1490845 NP_873399.1 CDS cdtC NC_002940.2 724787 725347 D cytolethal distending toxin protein C 724787..725347 Haemophilus ducreyi 35000HP 1490846 NP_873400.1 CDS HD0905 NC_002940.2 725682 726008 D IstB , C-terminal fragment 725682..726008 Haemophilus ducreyi 35000HP 1490847 NP_873401.1 CDS HD0906 NC_002940.2 726224 726373 D hypothetical protein 726224..726373 Haemophilus ducreyi 35000HP 1490848 NP_873402.1 CDS HD0907 NC_002940.2 726539 727120 R hypothetical protein complement(726539..727120) Haemophilus ducreyi 35000HP 1490849 NP_873403.1 CDS tnpR NC_002940.2 727649 728233 D transposon gamma-delta resolvase 727649..728233 Haemophilus ducreyi 35000HP 1490850 NP_873404.1 CDS HD0909 NC_002940.2 728253 728669 R hypothetical protein complement(728253..728669) Haemophilus ducreyi 35000HP 1490851 NP_873405.1 CDS hicB NC_002940.2 728678 729181 R HicB protein complement(728678..729181) Haemophilus ducreyi 35000HP 1490852 NP_873406.1 CDS hicA NC_002940.2 729191 729445 R HicA protein complement(729191..729445) Haemophilus ducreyi 35000HP 1490853 NP_873407.1 CDS HD0912 NC_002940.2 729797 730264 D hypothetical protein 729797..730264 Haemophilus ducreyi 35000HP 1490854 NP_873408.1 CDS HD0913 NC_002940.2 730261 731187 R hypothetical protein complement(730261..731187) Haemophilus ducreyi 35000HP 1490855 NP_873409.1 CDS HD0914 NC_002940.2 731304 732062 R type I restriction enzyme M subunit complement(731304..732062) Haemophilus ducreyi 35000HP 1490856 NP_873410.1 CDS HD0915 NC_002940.2 732144 732872 R hypothetical protein complement(732144..732872) Haemophilus ducreyi 35000HP 1490857 NP_873411.1 CDS traC NC_002940.2 732982 733926 R DNA primase complement(732982..733926) Haemophilus ducreyi 35000HP 1490858 NP_873412.1 CDS HD0918 NC_002940.2 734003 734287 R hypothetical protein complement(734003..734287) Haemophilus ducreyi 35000HP 1490859 NP_873413.1 CDS HD0919 NC_002940.2 734362 734700 R hypothetical protein complement(734362..734700) Haemophilus ducreyi 35000HP 1490860 NP_873414.1 CDS HD0920 NC_002940.2 735343 735513 D hypothetical protein 735343..735513 Haemophilus ducreyi 35000HP 1490861 NP_873415.1 CDS HD0921 NC_002940.2 735782 736438 D hypothetical protein 735782..736438 Haemophilus ducreyi 35000HP 1490862 NP_873416.1 CDS HD0922 NC_002940.2 736465 738462 D hypothetical protein 736465..738462 Haemophilus ducreyi 35000HP 1490863 NP_873417.1 CDS HD0923 NC_002940.2 738479 738826 D hypothetical protein 738479..738826 Haemophilus ducreyi 35000HP 1490864 NP_873418.1 CDS HD0924 NC_002940.2 738977 739444 D hypothetical protein 738977..739444 Haemophilus ducreyi 35000HP 1490865 NP_873419.1 CDS HD0925 NC_002940.2 739428 739559 D hypothetical protein 739428..739559 Haemophilus ducreyi 35000HP 1490866 NP_873420.1 CDS HD0926 NC_002940.2 739493 739924 R hypothetical protein complement(739493..739924) Haemophilus ducreyi 35000HP 1490867 NP_873421.1 CDS HD0927 NC_002940.2 740037 740180 R hypothetical protein complement(740037..740180) Haemophilus ducreyi 35000HP 1490868 NP_873422.1 CDS HD0928 NC_002940.2 740201 741004 R hypothetical protein complement(740201..741004) Haemophilus ducreyi 35000HP 1490869 NP_873423.1 CDS HD0930 NC_002940.2 741017 741349 R hypothetical protein complement(741017..741349) Haemophilus ducreyi 35000HP 1490870 NP_873424.1 CDS HD0931 NC_002940.2 741330 741785 R hypothetical protein complement(741330..741785) Haemophilus ducreyi 35000HP 1490871 NP_873425.1 CDS HD0932 NC_002940.2 741757 742149 R hypothetical protein complement(741757..742149) Haemophilus ducreyi 35000HP 1490872 NP_873426.1 CDS HD0933 NC_002940.2 742130 744538 R hypothetical protein complement(742130..744538) Haemophilus ducreyi 35000HP 1490873 NP_873427.1 CDS HD0934 NC_002940.2 744538 744945 R hypothetical protein complement(744538..744945) Haemophilus ducreyi 35000HP 1490874 NP_873428.1 CDS HD0935 NC_002940.2 744962 746407 R hypothetical protein complement(744962..746407) Haemophilus ducreyi 35000HP 1490875 NP_873429.1 CDS HD0936 NC_002940.2 746420 747280 R hypothetical protein complement(746420..747280) Haemophilus ducreyi 35000HP 1490876 NP_873430.1 CDS HD0937 NC_002940.2 747344 747919 R hypothetical protein complement(747344..747919) Haemophilus ducreyi 35000HP 1490877 NP_873431.1 CDS HD0938 NC_002940.2 747931 748305 R hypothetical protein complement(747931..748305) Haemophilus ducreyi 35000HP 1490878 NP_873432.1 CDS HD0939 NC_002940.2 748323 748712 R hypothetical protein complement(748323..748712) Haemophilus ducreyi 35000HP 1490879 NP_873433.1 CDS HD0940 NC_002940.2 748972 749298 R hypothetical protein complement(748972..749298) Haemophilus ducreyi 35000HP 1490880 NP_873434.1 CDS HD0941 NC_002940.2 749465 750151 R hypothetical protein complement(749465..750151) Haemophilus ducreyi 35000HP 1490881 NP_873435.1 CDS HD0942 NC_002940.2 750151 750477 R hypothetical protein complement(750151..750477) Haemophilus ducreyi 35000HP 1490882 NP_873436.1 CDS HD0943 NC_002940.2 750478 750717 R hypothetical protein complement(750478..750717) Haemophilus ducreyi 35000HP 1490883 NP_873437.1 CDS HD0944 NC_002940.2 750624 751232 R hypothetical protein complement(750624..751232) Haemophilus ducreyi 35000HP 1490884 NP_873438.1 CDS HD0945 NC_002940.2 751351 751824 R DNA repair protein complement(751351..751824) Haemophilus ducreyi 35000HP 1490885 NP_873439.1 CDS HD0946 NC_002940.2 751906 752250 R hypothetical protein complement(751906..752250) Haemophilus ducreyi 35000HP 1490886 NP_873440.1 CDS HD0947 NC_002940.2 752505 752786 R hypothetical protein complement(752505..752786) Haemophilus ducreyi 35000HP 1490887 NP_873441.1 CDS HD0948 NC_002940.2 752898 753062 R hypothetical protein complement(752898..753062) Haemophilus ducreyi 35000HP 1490888 NP_873442.1 CDS HD0950 NC_002940.2 753101 753550 R hypothetical protein complement(753101..753550) Haemophilus ducreyi 35000HP 1490889 NP_873443.1 CDS HD0951 NC_002940.2 753611 754084 R hypothetical protein complement(753611..754084) Haemophilus ducreyi 35000HP 1490890 NP_873444.1 CDS HD0952 NC_002940.2 754179 754394 R hypothetical protein complement(754179..754394) Haemophilus ducreyi 35000HP 1490891 NP_873445.1 CDS HD0953 NC_002940.2 754809 755018 D hypothetical protein 754809..755018 Haemophilus ducreyi 35000HP 1490892 NP_873446.1 CDS topB1 NC_002940.2 755180 756691 R DNA topoisomerase III complement(755180..756691) Haemophilus ducreyi 35000HP 1490893 NP_873447.1 CDS HD0955 NC_002940.2 756688 756885 R filamentous phage CTX RstR-like repressor complement(756688..756885) Haemophilus ducreyi 35000HP 1490894 NP_873448.1 CDS HD0956 NC_002940.2 757015 758004 D hypothetical protein 757015..758004 Haemophilus ducreyi 35000HP 1490895 NP_873449.1 CDS HD0957 NC_002940.2 757973 758374 R hypothetical protein complement(757973..758374) Haemophilus ducreyi 35000HP 1490896 NP_873450.1 CDS HD0958 NC_002940.2 758470 758700 R hypothetical protein complement(758470..758700) Haemophilus ducreyi 35000HP 1490897 NP_873451.1 CDS HD0959 NC_002940.2 758979 759077 D hypothetical protein 758979..759077 Haemophilus ducreyi 35000HP 1490898 NP_873452.1 CDS HD0960 NC_002940.2 758989 759486 R hypothetical protein complement(758989..759486) Haemophilus ducreyi 35000HP 1490899 NP_873453.1 CDS HD0961 NC_002940.2 759539 760042 R hypothetical protein complement(759539..760042) Haemophilus ducreyi 35000HP 1490900 NP_873454.1 CDS ssb2 NC_002940.2 760133 760549 R single-stranded DNA-binding protein complement(760133..760549) Haemophilus ducreyi 35000HP 1490901 NP_873455.1 CDS HD0963 NC_002940.2 760905 761153 R hypothetical protein complement(760905..761153) Haemophilus ducreyi 35000HP 1490902 NP_873456.1 CDS HD0964 NC_002940.2 761289 761438 R hypothetical protein complement(761289..761438) Haemophilus ducreyi 35000HP 1490903 NP_873457.1 CDS HD0965 NC_002940.2 761531 761623 D hypothetical protein 761531..761623 Haemophilus ducreyi 35000HP 1490904 NP_873458.1 CDS HD0966 NC_002940.2 761795 762562 R hypothetical protein complement(761795..762562) Haemophilus ducreyi 35000HP 1490905 NP_873459.1 CDS HD0967 NC_002940.2 762639 763016 R hypothetical protein complement(762639..763016) Haemophilus ducreyi 35000HP 1490906 NP_873460.1 CDS HD0968 NC_002940.2 763036 763803 R hypothetical protein complement(763036..763803) Haemophilus ducreyi 35000HP 1490907 NP_873461.1 CDS HD0969 NC_002940.2 764006 764563 R hypothetical protein complement(764006..764563) Haemophilus ducreyi 35000HP 1490908 NP_873462.1 CDS HD0970 NC_002940.2 764550 765248 R hypothetical protein complement(764550..765248) Haemophilus ducreyi 35000HP 1490909 NP_873463.1 CDS HD0971 NC_002940.2 765230 765877 R hypothetical protein complement(765230..765877) Haemophilus ducreyi 35000HP 1490910 NP_873464.1 CDS HD0972 NC_002940.2 765930 766166 R hypothetical protein complement(765930..766166) Haemophilus ducreyi 35000HP 1490911 NP_873465.1 CDS dnaB1 NC_002940.2 766159 767535 R replicative DNA helicase complement(766159..767535) Haemophilus ducreyi 35000HP 1490912 NP_873466.1 CDS HD0974 NC_002940.2 767541 768374 R chromosome partitioning-like protein complement(767541..768374) Haemophilus ducreyi 35000HP 1490913 NP_873467.1 CDS mfd NC_002940.2 768923 772405 R transcription repair coupling factor complement(768923..772405) Haemophilus ducreyi 35000HP 1490917 NP_873468.1 CDS pepN NC_002940.2 772508 775117 D aminopeptidase 772508..775117 Haemophilus ducreyi 35000HP 1490918 NP_873469.1 CDS HD0977 NC_002940.2 775228 775827 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY complement(775228..775827) Haemophilus ducreyi 35000HP 1490919 NP_873470.1 CDS folB NC_002940.2 775887 776258 D dihydroneopterin aldolase 775887..776258 Haemophilus ducreyi 35000HP 1490920 NP_873471.1 CDS cdd NC_002940.2 776341 777240 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 776341..777240 Haemophilus ducreyi 35000HP 1490921 NP_873472.1 CDS ftsX NC_002940.2 777282 778220 R ABC transporter membrane protein; cell division protein FtsX complement(777282..778220) Haemophilus ducreyi 35000HP 1490922 NP_873473.1 CDS fstE NC_002940.2 778230 778883 R cell division ATP-binding protein FtsE complement(778230..778883) Haemophilus ducreyi 35000HP 1490923 NP_873474.1 CDS ftsY NC_002940.2 778922 780481 R cell division protein FtsY complement(778922..780481) Haemophilus ducreyi 35000HP 1490924 NP_873475.1 CDS HD0985 NC_002940.2 780561 781154 D hypothetical protein 780561..781154 Haemophilus ducreyi 35000HP 1490925 NP_873476.1 CDS HD0986 NC_002940.2 781201 781512 D highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 781201..781512 Haemophilus ducreyi 35000HP 1490926 NP_873477.1 CDS hpaC NC_002940.2 781528 782037 D Flavin:NADH oxidoreductase component; 4-hydroxyphenylacetic acid hydroxylase coupling protein 781528..782037 Haemophilus ducreyi 35000HP 1490927 NP_873478.1 CDS prlC NC_002940.2 782105 784135 R oligopeptidase A complement(782105..784135) Haemophilus ducreyi 35000HP 1490928 NP_873479.1 CDS pflA NC_002940.2 784262 784996 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(784262..784996) Haemophilus ducreyi 35000HP 1490929 NP_873480.1 CDS pflB NC_002940.2 785164 787476 R formate acetyltransferase complement(785164..787476) Haemophilus ducreyi 35000HP 1490930 NP_873481.1 CDS focA NC_002940.2 787574 788398 R formate transporter complement(787574..788398) Haemophilus ducreyi 35000HP 1490931 NP_873482.1 CDS HD0992 NC_002940.2 788667 789092 D hypothetical protein 788667..789092 Haemophilus ducreyi 35000HP 1490932 NP_873483.1 CDS HD0993 NC_002940.2 789058 789150 R hypothetical protein complement(789058..789150) Haemophilus ducreyi 35000HP 1490933 NP_873484.1 CDS potD1 NC_002940.2 789156 790202 R spermidine/putrescine-binding periplasmic protein (SPBP) complement(789156..790202) Haemophilus ducreyi 35000HP 1490934 NP_873485.1 CDS HD0995 NC_002940.2 790412 791503 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(790412..791503) Haemophilus ducreyi 35000HP 1490935 NP_873486.1 CDS pth NC_002940.2 791604 792206 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(791604..792206) Haemophilus ducreyi 35000HP 1490936 NP_873487.1 CDS HD0997 NC_002940.2 792207 792359 R hypothetical protein complement(792207..792359) Haemophilus ducreyi 35000HP 1490937 NP_873488.1 CDS uraA NC_002940.2 792361 793587 R uracil permease complement(792361..793587) Haemophilus ducreyi 35000HP 1490938 NP_873489.1 CDS putP NC_002940.2 793737 795260 R sodium/proline symporter, proline permease complement(793737..795260) Haemophilus ducreyi 35000HP 1490939 NP_873490.1 CDS HD1000 NC_002940.2 795558 795710 R hypothetical protein complement(795558..795710) Haemophilus ducreyi 35000HP 1490940 NP_873491.1 CDS HD1001 NC_002940.2 796176 796586 R hypothetical protein complement(796176..796586) Haemophilus ducreyi 35000HP 1490941 NP_873492.1 CDS HD1002 NC_002940.2 796572 797123 D hypothetical protein 796572..797123 Haemophilus ducreyi 35000HP 1490942 NP_873493.1 CDS HD1003 NC_002940.2 797179 797769 D hypothetical protein 797179..797769 Haemophilus ducreyi 35000HP 1490943 NP_873494.1 CDS hupA NC_002940.2 797905 798177 D DNA-binding protein HU 797905..798177 Haemophilus ducreyi 35000HP 1490944 NP_873495.1 CDS thyA NC_002940.2 798241 799092 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(798241..799092) Haemophilus ducreyi 35000HP 1490945 NP_873496.1 CDS HD1006 NC_002940.2 799193 799762 D hypothetical protein 799193..799762 Haemophilus ducreyi 35000HP 1490946 NP_873497.1 CDS bioB NC_002940.2 799854 800858 D biotin synthetase 799854..800858 Haemophilus ducreyi 35000HP 1490947 NP_873498.1 CDS cspC NC_002940.2 800910 801119 R cold shock-like protein CspC complement(800910..801119) Haemophilus ducreyi 35000HP 1490948 NP_873499.1 CDS proQ NC_002940.2 801490 802038 D affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 801490..802038 Haemophilus ducreyi 35000HP 1490949 NP_873500.1 CDS prc NC_002940.2 802103 804169 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 802103..804169 Haemophilus ducreyi 35000HP 1490950 NP_873501.1 CDS HD1011 NC_002940.2 804267 804506 D hypothetical protein 804267..804506 Haemophilus ducreyi 35000HP 1490951 NP_873502.1 CDS HD1013 NC_002940.2 805434 805664 R hypothetical protein complement(805434..805664) Haemophilus ducreyi 35000HP 1490952 NP_873503.1 CDS HD1014 NC_002940.2 805718 806095 R hypothetical protein complement(805718..806095) Haemophilus ducreyi 35000HP 1490953 NP_873504.1 CDS HD1015 NC_002940.2 806255 806404 R hypothetical protein complement(806255..806404) Haemophilus ducreyi 35000HP 1490954 NP_873505.1 CDS HD1016 NC_002940.2 806377 806523 R hypothetical protein complement(806377..806523) Haemophilus ducreyi 35000HP 1490955 NP_873506.1 CDS HD1017 NC_002940.2 807600 808031 D hypothetical protein 807600..808031 Haemophilus ducreyi 35000HP 1490956 NP_873507.1 CDS macA NC_002940.2 808192 809364 D macrolide-specific efflux protein 808192..809364 Haemophilus ducreyi 35000HP 1490957 NP_873508.1 CDS macB NC_002940.2 809613 811703 D macrolide-specific ABC-type efflux carrier 809613..811703 Haemophilus ducreyi 35000HP 1490958 NP_873509.1 CDS HD1020 NC_002940.2 812185 812814 D glyoxalase II family protein 812185..812814 Haemophilus ducreyi 35000HP 1490959 NP_873510.1 CDS HD1021 NC_002940.2 812807 813574 R hypothetical protein complement(812807..813574) Haemophilus ducreyi 35000HP 1490960 NP_873511.1 CDS HD1022 NC_002940.2 813571 813948 R hypothetical protein complement(813571..813948) Haemophilus ducreyi 35000HP 1490961 NP_873512.1 CDS HD1023 NC_002940.2 813950 814312 R histidine triad, HIT-like protein complement(813950..814312) Haemophilus ducreyi 35000HP 1490962 NP_873513.1 CDS yfeD NC_002940.2 814390 815220 R iron (chelated) transport system membrane protein complement(814390..815220) Haemophilus ducreyi 35000HP 1490963 NP_873514.1 CDS yfeC NC_002940.2 815213 816070 R iron (chelated) transport system membrane protein complement(815213..816070) Haemophilus ducreyi 35000HP 1490964 NP_873515.1 CDS rnhB NC_002940.2 816071 816664 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(816071..816664) Haemophilus ducreyi 35000HP 1490965 NP_873516.1 CDS HD1027 NC_002940.2 816681 817709 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(816681..817709) Haemophilus ducreyi 35000HP 1490966 NP_873517.1 CDS gcvA NC_002940.2 818228 819121 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 818228..819121 Haemophilus ducreyi 35000HP 1490967 NP_873518.1 CDS HD1029 NC_002940.2 819118 819804 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 819118..819804 Haemophilus ducreyi 35000HP 1490968 NP_873519.1 CDS cysB NC_002940.2 819801 820784 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 819801..820784 Haemophilus ducreyi 35000HP 1490969 NP_873520.1 CDS HD1031 NC_002940.2 820785 821429 D hypothetical protein 820785..821429 Haemophilus ducreyi 35000HP 1490970 NP_873521.1 CDS uvrD NC_002940.2 821593 823782 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 821593..823782 Haemophilus ducreyi 35000HP 1490971 NP_873522.1 CDS argH NC_002940.2 823942 825318 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 823942..825318 Haemophilus ducreyi 35000HP 1490972 NP_873523.1 CDS HD1034 NC_002940.2 825390 826940 R integral membrane sulfate transporter complement(825390..826940) Haemophilus ducreyi 35000HP 1490973 NP_873524.1 CDS HD1036 NC_002940.2 827192 828163 D hypothetical protein 827192..828163 Haemophilus ducreyi 35000HP 1490974 NP_873525.1 CDS ispG NC_002940.2 828171 829280 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 828171..829280 Haemophilus ducreyi 35000HP 1490975 NP_873526.1 CDS hisS NC_002940.2 829393 830664 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 829393..830664 Haemophilus ducreyi 35000HP 1490976 NP_873527.1 CDS HD1040 NC_002940.2 830701 831324 D hypothetical protein 830701..831324 Haemophilus ducreyi 35000HP 1490977 NP_873528.1 CDS HD1041 NC_002940.2 831446 832129 D hypothetical protein 831446..832129 Haemophilus ducreyi 35000HP 1490978 NP_873529.1 CDS HD1044 NC_002940.2 833112 833291 D hypothetical protein 833112..833291 Haemophilus ducreyi 35000HP 1490980 NP_873530.1 CDS rpsF NC_002940.2 833324 833698 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 833324..833698 Haemophilus ducreyi 35000HP 1490981 NP_873531.1 CDS priB NC_002940.2 833673 834047 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 833673..834047 Haemophilus ducreyi 35000HP 1490982 NP_873532.1 CDS rpsR NC_002940.2 834022 834249 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 834022..834249 Haemophilus ducreyi 35000HP 1490983 NP_873533.1 CDS rplI NC_002940.2 834267 834716 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 834267..834716 Haemophilus ducreyi 35000HP 1490984 NP_873534.1 CDS HD1049 NC_002940.2 834976 835719 D hypothetical protein 834976..835719 Haemophilus ducreyi 35000HP 1490985 NP_873535.1 CDS HD1050 NC_002940.2 835737 836489 R ubiquinone/menaquinone biosynthesis methyltransferase complement(835737..836489) Haemophilus ducreyi 35000HP 1490986 NP_873536.1 CDS HD1051 NC_002940.2 836666 837283 D hypothetical protein 836666..837283 Haemophilus ducreyi 35000HP 1490987 NP_873537.1 CDS HD1052 NC_002940.2 837343 838407 D pseudouridine synthase 837343..838407 Haemophilus ducreyi 35000HP 1490988 NP_873538.1 CDS ndk NC_002940.2 838510 838926 R nucleoside diphosphate kinase complement(838510..838926) Haemophilus ducreyi 35000HP 1490989 NP_873539.1 CDS metG NC_002940.2 838996 841050 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(838996..841050) Haemophilus ducreyi 35000HP 1490990 NP_873540.1 CDS menC NC_002940.2 841198 842175 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 841198..842175 Haemophilus ducreyi 35000HP 1490991 NP_873541.1 CDS rsuA NC_002940.2 842281 842973 D ribosomal small subunit pseudouridine synthase A 842281..842973 Haemophilus ducreyi 35000HP 1490992 NP_873542.1 CDS HD1060 NC_002940.2 843048 843428 R hypothetical protein complement(843048..843428) Haemophilus ducreyi 35000HP 1490993 NP_873543.1 CDS HD1061 NC_002940.2 843508 844062 R hypothetical protein complement(843508..844062) Haemophilus ducreyi 35000HP 1490994 NP_873544.1 CDS nfo NC_002940.2 844116 844961 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 844116..844961 Haemophilus ducreyi 35000HP 1490995 NP_873545.1 CDS HD1063 NC_002940.2 845042 845497 R hypothetical protein complement(845042..845497) Haemophilus ducreyi 35000HP 1490996 NP_873546.1 CDS HD1064 NC_002940.2 845726 846112 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(845726..846112) Haemophilus ducreyi 35000HP 1490997 NP_873547.1 CDS HD1065 NC_002940.2 846171 846275 R hypothetical protein complement(846171..846275) Haemophilus ducreyi 35000HP 1490998 NP_873548.1 CDS ung NC_002940.2 846314 846985 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 846314..846985 Haemophilus ducreyi 35000HP 1490999 NP_873549.1 CDS HD1070 NC_002940.2 850833 851027 R hypothetical protein complement(850833..851027) Haemophilus ducreyi 35000HP 1491001 NP_873550.1 CDS HD1071 NC_002940.2 851085 851537 R hypothetical protein complement(851085..851537) Haemophilus ducreyi 35000HP 1491002 NP_873551.1 CDS grpE NC_002940.2 851650 852246 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(851650..852246) Haemophilus ducreyi 35000HP 1491003 NP_873552.1 CDS potD2 NC_002940.2 852497 853576 D spermidine/putrescine-binding periplasmic protein (SPBP) 852497..853576 Haemophilus ducreyi 35000HP 1491004 NP_873553.1 CDS norM NC_002940.2 853720 855111 D multidrug resistance protein NorM 853720..855111 Haemophilus ducreyi 35000HP 1491005 NP_873554.1 CDS recB NC_002940.2 855164 858760 D exodeoxyribonuclease V subunit beta 855164..858760 Haemophilus ducreyi 35000HP 1491006 NP_873555.1 CDS ogt NC_002940.2 858836 859393 R methylated-DNA--protein-cysteine S-methyltransferase complement(858836..859393) Haemophilus ducreyi 35000HP 1491007 NP_873556.1 CDS ompP1 NC_002940.2 859457 860764 R outer membrane protein P1 complement(859457..860764) Haemophilus ducreyi 35000HP 1491008 NP_873557.1 CDS HD1079 NC_002940.2 860922 861029 D hypothetical protein 860922..861029 Haemophilus ducreyi 35000HP 1491009 NP_873558.1 CDS HD1080 NC_002940.2 861222 861674 D hypothetical protein 861222..861674 Haemophilus ducreyi 35000HP 1491010 NP_873559.1 CDS iscS NC_002940.2 861728 862948 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 861728..862948 Haemophilus ducreyi 35000HP 1491011 NP_873560.1 CDS iscU NC_002940.2 862996 863379 D scaffold protein 862996..863379 Haemophilus ducreyi 35000HP 1491012 NP_873561.1 CDS HD1084 NC_002940.2 863513 863836 D hesB family protein 863513..863836 Haemophilus ducreyi 35000HP 1491013 NP_873562.1 CDS hscB NC_002940.2 863845 864366 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 863845..864366 Haemophilus ducreyi 35000HP 1491014 NP_873563.1 CDS HD1086 NC_002940.2 864411 865043 D hypothetical protein 864411..865043 Haemophilus ducreyi 35000HP 1491015 NP_873564.1 CDS hscA NC_002940.2 865095 866948 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 865095..866948 Haemophilus ducreyi 35000HP 1491016 NP_873565.1 CDS fdx2 NC_002940.2 866960 867301 D ferredoxin 866960..867301 Haemophilus ducreyi 35000HP 1491017 NP_873566.1 CDS HD1089 NC_002940.2 867346 867495 D hypothetical protein 867346..867495 Haemophilus ducreyi 35000HP 1491018 NP_873567.1 CDS HD1090 NC_002940.2 867534 868343 R glycosyl transferase family protein complement(867534..868343) Haemophilus ducreyi 35000HP 1491019 NP_873568.1 CDS cca NC_002940.2 868356 869594 R catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase complement(868356..869594) Haemophilus ducreyi 35000HP 1491020 NP_873569.1 CDS ppiB NC_002940.2 869698 870207 R peptidyl-prolyl cis-trans isomerase B complement(869698..870207) Haemophilus ducreyi 35000HP 1491021 NP_873570.1 CDS cysS NC_002940.2 870350 871729 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 870350..871729 Haemophilus ducreyi 35000HP 1491022 NP_873571.1 CDS HD1094 NC_002940.2 871818 874130 D outer membrane serine protease 871818..874130 Haemophilus ducreyi 35000HP 1491023 NP_873572.1 CDS HD1095 NC_002940.2 874155 874562 D hypothetical protein 874155..874562 Haemophilus ducreyi 35000HP 1491024 NP_873573.1 CDS HD1096 NC_002940.2 874715 875104 R hypothetical protein complement(874715..875104) Haemophilus ducreyi 35000HP 1491025 NP_873574.1 CDS HD1097 NC_002940.2 875184 875300 R hypothetical protein complement(875184..875300) Haemophilus ducreyi 35000HP 1491026 NP_873575.1 CDS metN NC_002940.2 875420 876454 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding protein 875420..876454 Haemophilus ducreyi 35000HP 1491027 NP_873576.1 CDS metI NC_002940.2 876444 877121 D D-methionine transport system permease protein MetI 876444..877121 Haemophilus ducreyi 35000HP 1491028 NP_873577.1 CDS hlpA NC_002940.2 877171 877983 D hypothetical protein 877171..877983 Haemophilus ducreyi 35000HP 1491029 NP_873578.1 CDS kdkA NC_002940.2 878056 878784 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(878056..878784) Haemophilus ducreyi 35000HP 1491030 NP_873579.1 CDS HD1102 NC_002940.2 878759 878899 R hypothetical protein complement(878759..878899) Haemophilus ducreyi 35000HP 1491031 NP_873580.1 CDS folE NC_002940.2 878892 879548 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 878892..879548 Haemophilus ducreyi 35000HP 1491032 NP_873581.1 CDS truA NC_002940.2 879647 880432 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 879647..880432 Haemophilus ducreyi 35000HP 1491033 NP_873582.1 CDS HD1105 NC_002940.2 880491 880808 R hypothetical protein complement(880491..880808) Haemophilus ducreyi 35000HP 1491034 NP_873583.1 CDS lpxL NC_002940.2 880973 881911 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 880973..881911 Haemophilus ducreyi 35000HP 1491035 NP_873584.1 CDS dapA NC_002940.2 882025 882918 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 882025..882918 Haemophilus ducreyi 35000HP 1491036 NP_873585.1 CDS folD NC_002940.2 883385 884248 D bifunctional; methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase 883385..884248 Haemophilus ducreyi 35000HP 1491039 NP_873586.1 CDS HD1109 NC_002940.2 884370 885911 D oxalate/formate antiporter 884370..885911 Haemophilus ducreyi 35000HP 1491040 NP_873587.1 CDS fdhE NC_002940.2 885961 886878 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(885961..886878) Haemophilus ducreyi 35000HP 1491041 NP_873588.1 CDS fdnI NC_002940.2 886978 887652 R formate dehydrogenase, gamma subunit; cytochrome B556 subunit complement(886978..887652) Haemophilus ducreyi 35000HP 1491042 NP_873589.1 CDS HD1112 NC_002940.2 887645 887761 R formate dehydrogenase, iron-sulfur subunit, beta subunit complement(887645..887761) Haemophilus ducreyi 35000HP 1491043 NP_873590.1 CDS fdhD NC_002940.2 887771 888442 D formate dehydrogenase formation protein 887771..888442 Haemophilus ducreyi 35000HP 1491044 NP_873591.1 CDS nth NC_002940.2 888520 889155 R endonuclease III, DNA (apurinic or apyrimidinic site) lyase complement(888520..889155) Haemophilus ducreyi 35000HP 1491045 NP_873592.1 CDS HD1117 NC_002940.2 889185 889967 R hypothetical protein complement(889185..889967) Haemophilus ducreyi 35000HP 1491046 NP_873593.1 CDS folA NC_002940.2 890053 890538 D dihydrofolate reductase 890053..890538 Haemophilus ducreyi 35000HP 1491047 NP_873594.1 CDS HD1119 NC_002940.2 890516 890614 R hypothetical protein complement(890516..890614) Haemophilus ducreyi 35000HP 1491048 NP_873595.1 CDS HD1120 NC_002940.2 890660 890875 D hypothetical protein 890660..890875 Haemophilus ducreyi 35000HP 1491049 NP_873596.1 CDS radA NC_002940.2 890942 892321 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(890942..892321) Haemophilus ducreyi 35000HP 1491050 NP_873597.1 CDS HD1123 NC_002940.2 892515 892964 D prepilin peptidase dependent protein D 892515..892964 Haemophilus ducreyi 35000HP 1491051 NP_873598.1 CDS hofB NC_002940.2 892976 894370 D protein transport protein HofB, pili/fimbriae biogenesis protein 892976..894370 Haemophilus ducreyi 35000HP 1491052 NP_873599.1 CDS hofC NC_002940.2 894354 895547 D protein transport protein HofC; pili/fimbriae biogenesis protein 894354..895547 Haemophilus ducreyi 35000HP 1491053 NP_873600.1 CDS HD1126 NC_002940.2 895685 896239 D hypothetical protein 895685..896239 Haemophilus ducreyi 35000HP 1491054 NP_873601.1 CDS coaE NC_002940.2 896257 896874 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 896257..896874 Haemophilus ducreyi 35000HP 1491055 NP_873602.1 CDS HD1129 NC_002940.2 896877 897065 D hypothetical protein 896877..897065 Haemophilus ducreyi 35000HP 1491056 NP_873603.1 CDS holA NC_002940.2 897099 898124 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(897099..898124) Haemophilus ducreyi 35000HP 1491057 NP_873604.1 CDS rlpB NC_002940.2 898130 898627 R rare lipoprotein B complement(898130..898627) Haemophilus ducreyi 35000HP 1491058 NP_873605.1 CDS leuS NC_002940.2 898676 901261 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(898676..901261) Haemophilus ducreyi 35000HP 1491059 NP_873606.1 CDS serS NC_002940.2 901412 902719 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(901412..902719) Haemophilus ducreyi 35000HP 1491060 NP_873607.1 CDS smpB NC_002940.2 902777 903259 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(902777..903259) Haemophilus ducreyi 35000HP 1491061 NP_873608.1 CDS HD1136 NC_002940.2 903365 904774 R hypothetical protein complement(903365..904774) Haemophilus ducreyi 35000HP 1491062 NP_873609.1 CDS HD1137 NC_002940.2 904828 904986 R hypothetical protein complement(904828..904986) Haemophilus ducreyi 35000HP 1491063 NP_873610.1 CDS HD1138 NC_002940.2 904995 905726 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(904995..905726) Haemophilus ducreyi 35000HP 1491064 NP_873611.1 CDS HD1139 NC_002940.2 905726 906079 R hypothetical protein complement(905726..906079) Haemophilus ducreyi 35000HP 1491065 NP_873612.1 CDS HD1140 NC_002940.2 906163 906294 D hypothetical protein 906163..906294 Haemophilus ducreyi 35000HP 1491066 NP_873613.1 CDS mnmC NC_002940.2 906346 908349 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 906346..908349 Haemophilus ducreyi 35000HP 1491067 NP_873614.1 CDS sdaA NC_002940.2 908408 909787 R L-serine dehydratase complement(908408..909787) Haemophilus ducreyi 35000HP 1491068 NP_873615.1 CDS sdaC NC_002940.2 909898 911124 R serine transporter complement(909898..911124) Haemophilus ducreyi 35000HP 1491069 NP_873616.1 CDS lnt NC_002940.2 911305 912822 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(911305..912822) Haemophilus ducreyi 35000HP 1491070 NP_873617.1 CDS corC NC_002940.2 912883 913773 R magnesium and cobalt efflux protein complement(912883..913773) Haemophilus ducreyi 35000HP 1491071 NP_873618.1 CDS glpF NC_002940.2 914141 914923 D glycerol uptake facilitator protein 914141..914923 Haemophilus ducreyi 35000HP 1491072 NP_873619.1 CDS lon NC_002940.2 916573 918981 R ATP-dependent protease LA complement(916573..918981) Haemophilus ducreyi 35000HP 1491074 NP_873620.1 CDS glpT NC_002940.2 919175 920611 R glycerol 3-phosphate transporter; G-3-P permease complement(919175..920611) Haemophilus ducreyi 35000HP 1491075 NP_873621.1 CDS HD1151 NC_002940.2 920631 920732 R hypothetical protein complement(920631..920732) Haemophilus ducreyi 35000HP 1491076 NP_873622.1 CDS lspB NC_002940.2 921945 923714 D large supernatant protein exporter 921945..923714 Haemophilus ducreyi 35000HP 1491078 NP_873623.1 CDS lspA2 NC_002940.2 923760 938519 D large supernatant protein 2 923760..938519 Haemophilus ducreyi 35000HP 1491079 NP_873624.1 CDS glpA NC_002940.2 938752 940434 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 938752..940434 Haemophilus ducreyi 35000HP 1491080 NP_873625.1 CDS glpB NC_002940.2 940424 941704 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 940424..941704 Haemophilus ducreyi 35000HP 1491081 NP_873626.1 CDS glpC NC_002940.2 941701 942975 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 941701..942975 Haemophilus ducreyi 35000HP 1491082 NP_873627.1 CDS ribD NC_002940.2 943332 944438 D riboflavin-specific deaminase; riboflavin biosynthesis protein RibD 943332..944438 Haemophilus ducreyi 35000HP 1491083 NP_873628.1 CDS ribE NC_002940.2 944453 945100 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 944453..945100 Haemophilus ducreyi 35000HP 1491084 NP_873629.1 CDS ribAB NC_002940.2 945156 946361 D Includes: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis protein ribA 945156..946361 Haemophilus ducreyi 35000HP 1491085 NP_873630.1 CDS ribH NC_002940.2 946471 946932 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 946471..946932 Haemophilus ducreyi 35000HP 1491086 NP_873631.1 CDS HD1166 NC_002940.2 946950 947042 R hypothetical protein complement(946950..947042) Haemophilus ducreyi 35000HP 1491087 NP_873632.1 CDS greB NC_002940.2 947020 947508 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB complement(947020..947508) Haemophilus ducreyi 35000HP 1491088 NP_873633.1 CDS kpsF NC_002940.2 947516 948451 R arabinose-5-phosphate isomerase complement(947516..948451) Haemophilus ducreyi 35000HP 1491089 NP_873634.1 CDS pepB NC_002940.2 948543 949853 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase complement(948543..949853) Haemophilus ducreyi 35000HP 1491090 NP_873635.1 CDS ompP4 NC_002940.2 949960 950790 R outer membrane protein P4 complement(949960..950790) Haemophilus ducreyi 35000HP 1491091 NP_873636.1 CDS HD1171 NC_002940.2 950986 951801 R haloacid dehalogenase-like hydrolase complement(950986..951801) Haemophilus ducreyi 35000HP 1491092 NP_873637.1 CDS rpoE NC_002940.2 952698 953276 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 952698..953276 Haemophilus ducreyi 35000HP 1491093 NP_873638.1 CDS rseA NC_002940.2 953295 953906 D sigma-E factor negative regulatory protein 953295..953906 Haemophilus ducreyi 35000HP 1491094 NP_873639.1 CDS rseC NC_002940.2 954084 954512 D sigma-E factor regulatory protein 954084..954512 Haemophilus ducreyi 35000HP 1491095 NP_873640.1 CDS upp NC_002940.2 956253 956879 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 956253..956879 Haemophilus ducreyi 35000HP 1491097 NP_873641.1 CDS ksgA NC_002940.2 956945 957814 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(956945..957814) Haemophilus ducreyi 35000HP 1491098 NP_873642.1 CDS surA NC_002940.2 957879 958832 R survival protein SurA; peptidyl-prolyl cis-trans isomerase complement(957879..958832) Haemophilus ducreyi 35000HP 1491099 NP_873643.1 CDS pyrR NC_002940.2 958921 959460 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(958921..959460) Haemophilus ducreyi 35000HP 1491100 NP_873644.1 CDS waaE NC_002940.2 959473 960903 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(959473..960903) Haemophilus ducreyi 35000HP 1491101 NP_873645.1 CDS engA NC_002940.2 960963 962495 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(960963..962495) Haemophilus ducreyi 35000HP 1491102 NP_873646.1 CDS relA NC_002940.2 962822 965029 D ppGpp synthetase I; GTP pyrophosphokinase 962822..965029 Haemophilus ducreyi 35000HP 1491103 NP_873647.1 CDS dxr NC_002940.2 965108 966298 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 965108..966298 Haemophilus ducreyi 35000HP 1491104 NP_873648.1 CDS lpxA NC_002940.2 966368 967162 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(966368..967162) Haemophilus ducreyi 35000HP 1491105 NP_873649.1 CDS fabZ NC_002940.2 967204 967668 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(967204..967668) Haemophilus ducreyi 35000HP 1491106 NP_873650.1 CDS lpxD NC_002940.2 967735 968760 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(967735..968760) Haemophilus ducreyi 35000HP 1491107 NP_873651.1 CDS HD1190 NC_002940.2 968760 969539 R hypothetical protein complement(968760..969539) Haemophilus ducreyi 35000HP 1491108 NP_873652.1 CDS D15 NC_002940.2 969641 972022 R outer membrane protein D-15 complement(969641..972022) Haemophilus ducreyi 35000HP 1491109 NP_873653.1 CDS ecfE NC_002940.2 972071 973384 R protease EcfE complement(972071..973384) Haemophilus ducreyi 35000HP 1491110 NP_873654.1 CDS cdsA NC_002940.2 973391 974260 R Phosphatidate cytidylyltransferase; CDP-diglyceride pyrophosphorylase complement(973391..974260) Haemophilus ducreyi 35000HP 1491111 NP_873655.1 CDS uppS NC_002940.2 974277 975005 R undecaprenyl pyrophosphate synthetase; UPP synthase complement(974277..975005) Haemophilus ducreyi 35000HP 1491112 NP_873656.1 CDS gloB NC_002940.2 975156 975863 R hydroxyacylglutathione hydrolase complement(975156..975863) Haemophilus ducreyi 35000HP 1491113 NP_873657.1 CDS pgpB NC_002940.2 975913 976641 R phosphatidylglycerophosphatase B complement(975913..976641) Haemophilus ducreyi 35000HP 1491114 NP_873658.1 CDS HD1200 NC_002940.2 976714 977028 R hypothetical protein complement(976714..977028) Haemophilus ducreyi 35000HP 1491115 NP_873659.1 CDS LgtF NC_002940.2 977139 977897 D UDP-glucose--lipooligosaccharide beta 1-4 glucosyltransferase 977139..977897 Haemophilus ducreyi 35000HP 1491116 NP_873660.1 CDS WaaQ NC_002940.2 977937 978971 R ADP-heptose--LPS heptosyltransferase III complement(977937..978971) Haemophilus ducreyi 35000HP 1491117 NP_873661.1 CDS HD1203 NC_002940.2 978977 979114 D hypothetical protein 978977..979114 Haemophilus ducreyi 35000HP 1491118 NP_873662.1 CDS argG NC_002940.2 979180 980511 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 979180..980511 Haemophilus ducreyi 35000HP 1491119 NP_873663.1 CDS HD1205 NC_002940.2 980616 981257 D hypothetical protein 980616..981257 Haemophilus ducreyi 35000HP 1491120 NP_873664.1 CDS rnhA NC_002940.2 981501 981962 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 981501..981962 Haemophilus ducreyi 35000HP 1491121 NP_873665.1 CDS HD1207 NC_002940.2 981988 982137 R hypothetical protein complement(981988..982137) Haemophilus ducreyi 35000HP 1491122 NP_873666.1 CDS cvpA NC_002940.2 982118 982630 D colicin V production protein 982118..982630 Haemophilus ducreyi 35000HP 1491123 NP_873667.1 CDS HD1211 NC_002940.2 984290 984772 R hypothetical protein complement(984290..984772) Haemophilus ducreyi 35000HP 1491125 NP_873668.1 CDS smpA NC_002940.2 985049 985432 R small protein A complement(985049..985432) Haemophilus ducreyi 35000HP 1491126 NP_873669.1 CDS HD1215 NC_002940.2 986581 986970 D hypothetical protein 986581..986970 Haemophilus ducreyi 35000HP 1491128 NP_873670.1 CDS HD1216 NC_002940.2 986995 987732 D hypothetical protein 986995..987732 Haemophilus ducreyi 35000HP 1491129 NP_873671.1 CDS HD1218 NC_002940.2 987952 988296 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor complement(987952..988296) Haemophilus ducreyi 35000HP 1491131 NP_873672.1 CDS HD1219 NC_002940.2 988501 989235 R hypothetical protein complement(988501..989235) Haemophilus ducreyi 35000HP 1491132 NP_873673.1 CDS ykgF NC_002940.2 989280 990689 R iron-sulfur electron transport protein complement(989280..990689) Haemophilus ducreyi 35000HP 1491133 NP_873674.1 CDS ykgE NC_002940.2 990704 991429 R dehydrogenase subunit complement(990704..991429) Haemophilus ducreyi 35000HP 1491134 NP_873675.1 CDS HD1225 NC_002940.2 992342 992713 D hypothetical protein 992342..992713 Haemophilus ducreyi 35000HP 1491137 NP_873676.1 CDS HD1227 NC_002940.2 993037 994770 D integral membrane protein 993037..994770 Haemophilus ducreyi 35000HP 1491138 NP_873677.1 CDS gmhA NC_002940.2 994843 995427 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(994843..995427) Haemophilus ducreyi 35000HP 1491139 NP_873678.1 CDS tyrR NC_002940.2 995630 996781 D transcriptional regulatory protein 995630..996781 Haemophilus ducreyi 35000HP 1491140 NP_873679.1 CDS sapA NC_002940.2 996781 998463 D peptide transport periplasmic protein SapA 996781..998463 Haemophilus ducreyi 35000HP 1491141 NP_873680.1 CDS sapB NC_002940.2 998469 999431 D peptide transport system permease SapB 998469..999431 Haemophilus ducreyi 35000HP 1491142 NP_873681.1 CDS sapC NC_002940.2 999421 1000308 D peptide transport system permease SapC 999421..1000308 Haemophilus ducreyi 35000HP 1491143 NP_873682.1 CDS sapD NC_002940.2 1000324 1001361 D peptide transport system ATP binding protein SapD 1000324..1001361 Haemophilus ducreyi 35000HP 1491144 NP_873683.1 CDS polA NC_002940.2 1001515 1004403 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1001515..1004403 Haemophilus ducreyi 35000HP 1491145 NP_873684.1 CDS lolA NC_002940.2 1004481 1005113 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1004481..1005113 Haemophilus ducreyi 35000HP 1491146 NP_873685.1 CDS rimK NC_002940.2 1005195 1006112 D ribosomal protein S6 modification protein 1005195..1006112 Haemophilus ducreyi 35000HP 1491147 NP_873686.1 CDS HD1239 NC_002940.2 1006116 1006886 R hypothetical protein complement(1006116..1006886) Haemophilus ducreyi 35000HP 1491148 NP_873687.1 CDS citC NC_002940.2 1007088 1008104 D citrate lyase synthetase; [citrate [pro-3S]-lyase] ligase 1007088..1008104 Haemophilus ducreyi 35000HP 1491149 NP_873688.1 CDS citD NC_002940.2 1008148 1008450 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 1008148..1008450 Haemophilus ducreyi 35000HP 1491150 NP_873689.1 CDS citE NC_002940.2 1008447 1009334 D citryl-CoA lyase subunit; citrate lyase beta chain 1008447..1009334 Haemophilus ducreyi 35000HP 1491151 NP_873690.1 CDS citF NC_002940.2 1009346 1010848 D citrate lyase alpha chain; citrate CoA-transferase subunit 1009346..1010848 Haemophilus ducreyi 35000HP 1491152 NP_873691.1 CDS citG NC_002940.2 1010902 1012317 D Includes: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; 2-(5''- triphosphoribosyl) -3'-dephosphocoenzyme-A synthase; CitXG protein 1010902..1012317 Haemophilus ducreyi 35000HP 1491153 NP_873692.1 CDS HD1246 NC_002940.2 1012326 1013774 D oxoglutarate/malate translocator 1012326..1013774 Haemophilus ducreyi 35000HP 1491154 NP_873693.1 CDS maeA NC_002940.2 1014008 1015276 D malate oxidoreductase (NAD) 1014008..1015276 Haemophilus ducreyi 35000HP 1491155 NP_873694.1 CDS HD1248 NC_002940.2 1015281 1015376 R hypothetical protein complement(1015281..1015376) Haemophilus ducreyi 35000HP 1491156 NP_873695.1 CDS rplY NC_002940.2 1015461 1015748 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1015461..1015748 Haemophilus ducreyi 35000HP 1491157 NP_873696.1 CDS HD1252 NC_002940.2 1017475 1017579 R hypothetical protein complement(1017475..1017579) Haemophilus ducreyi 35000HP 1491159 NP_873697.1 CDS dgkA NC_002940.2 1017558 1017917 R diacylglycerol kinase complement(1017558..1017917) Haemophilus ducreyi 35000HP 1491160 NP_873698.1 CDS HD1254 NC_002940.2 1018150 1019361 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1018150..1019361 Haemophilus ducreyi 35000HP 1491161 NP_873699.1 CDS rec2 NC_002940.2 1019499 1021787 D recombination protein 2 1019499..1021787 Haemophilus ducreyi 35000HP 1491162 NP_873700.1 CDS queA NC_002940.2 1021839 1022924 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(1021839..1022924) Haemophilus ducreyi 35000HP 1491163 NP_873701.1 CDS perM NC_002940.2 1023004 1024059 R permease complement(1023004..1024059) Haemophilus ducreyi 35000HP 1491164 NP_873702.1 CDS apaH NC_002940.2 1025214 1026026 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(1025214..1026026) Haemophilus ducreyi 35000HP 1491167 NP_873703.1 CDS rnb NC_002940.2 1026086 1028065 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(1026086..1028065) Haemophilus ducreyi 35000HP 1491168 NP_873704.1 CDS fabI NC_002940.2 1028254 1029042 R enoyl-[acyl-carrier-protein] reductase [NADH]; NADH- dependent enoyl-ACP reductase complement(1028254..1029042) Haemophilus ducreyi 35000HP 1491169 NP_873705.1 CDS HD1267 NC_002940.2 1029213 1029947 R SAM-dependent methyltransferase complement(1029213..1029947) Haemophilus ducreyi 35000HP 1491170 NP_873706.1 CDS HD1268 NC_002940.2 1029947 1030738 R esterase/lipase complement(1029947..1030738) Haemophilus ducreyi 35000HP 1491171 NP_873707.1 CDS seqA NC_002940.2 1030863 1031423 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 1030863..1031423 Haemophilus ducreyi 35000HP 1491172 NP_873708.1 CDS menE NC_002940.2 1031424 1032842 D O-succinylbenzoic acid--CoA ligase 1031424..1032842 Haemophilus ducreyi 35000HP 1491173 NP_873709.1 CDS aroC NC_002940.2 1036193 1037275 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1036193..1037275 Haemophilus ducreyi 35000HP 1491175 NP_873710.1 CDS mepA NC_002940.2 1037327 1038157 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 1037327..1038157 Haemophilus ducreyi 35000HP 1491176 NP_873711.1 CDS topB2 NC_002940.2 1038166 1040085 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1038166..1040085 Haemophilus ducreyi 35000HP 1491177 NP_873712.1 CDS secG NC_002940.2 1040214 1040543 D preprotein translocase subunit SecG 1040214..1040543 Haemophilus ducreyi 35000HP 1491178 NP_873713.1 CDS HD1278 NC_002940.2 1040787 1041965 D serine protease 1040787..1041965 Haemophilus ducreyi 35000HP 1491180 NP_873714.1 CDS HD1280 NC_002940.2 1041966 1043861 D serine protease-like protein 1041966..1043861 Haemophilus ducreyi 35000HP 1491181 NP_873715.1 CDS fhs NC_002940.2 1043954 1045624 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1043954..1045624) Haemophilus ducreyi 35000HP 1491182 NP_873716.1 CDS HD1283 NC_002940.2 1045600 1045710 D hypothetical protein 1045600..1045710 Haemophilus ducreyi 35000HP 1491183 NP_873717.1 CDS HD1284 NC_002940.2 1045743 1046186 D hypothetical protein 1045743..1046186 Haemophilus ducreyi 35000HP 1491184 NP_873718.1 CDS ssb NC_002940.2 1046317 1046847 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1046317..1046847) Haemophilus ducreyi 35000HP 1491185 NP_873719.1 CDS uvrA NC_002940.2 1046994 1049822 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1046994..1049822 Haemophilus ducreyi 35000HP 1491186 NP_873720.1 CDS HD1287 NC_002940.2 1049843 1051762 D ATP-dependent helicase 1049843..1051762 Haemophilus ducreyi 35000HP 1491187 NP_873721.1 CDS HD1288 NC_002940.2 1051931 1052173 D hypothetical protein 1051931..1052173 Haemophilus ducreyi 35000HP 1491188 NP_873722.1 CDS HD1289 NC_002940.2 1052194 1052886 D hypothetical protein 1052194..1052886 Haemophilus ducreyi 35000HP 1491189 NP_873723.1 CDS msrB NC_002940.2 1053040 1053432 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1053040..1053432) Haemophilus ducreyi 35000HP 1491190 NP_873724.1 CDS gapA NC_002940.2 1053689 1054693 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 1053689..1054693 Haemophilus ducreyi 35000HP 1491191 NP_873725.1 CDS mreB NC_002940.2 1054896 1055948 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1054896..1055948 Haemophilus ducreyi 35000HP 1491192 NP_873726.1 CDS mreC NC_002940.2 1056044 1057105 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1056044..1057105 Haemophilus ducreyi 35000HP 1491193 NP_873727.1 CDS mreD NC_002940.2 1057105 1057593 D rod shape-determining protein MreD 1057105..1057593 Haemophilus ducreyi 35000HP 1491194 NP_873728.1 CDS HD1296 NC_002940.2 1057641 1058981 D recombination factor protein RarA 1057641..1058981 Haemophilus ducreyi 35000HP 1491195 NP_873729.1 CDS znuB NC_002940.2 1059017 1059802 D high-affinity zinc uptake system membrane protein 1059017..1059802 Haemophilus ducreyi 35000HP 1491196 NP_873730.1 CDS tadG NC_002940.2 1059964 1061652 R tight adherence protein G complement(1059964..1061652) Haemophilus ducreyi 35000HP 1491197 NP_873731.1 CDS tadF NC_002940.2 1061686 1062297 R tight adherence protein F complement(1061686..1062297) Haemophilus ducreyi 35000HP 1491198 NP_873732.1 CDS tadE NC_002940.2 1062266 1062772 R tight adherence protein E complement(1062266..1062772) Haemophilus ducreyi 35000HP 1491199 NP_873733.1 CDS tadD NC_002940.2 1062775 1063527 R tight adherence protein D complement(1062775..1063527) Haemophilus ducreyi 35000HP 1491200 NP_873734.1 CDS tadC NC_002940.2 1063517 1064389 R tight adherence protein C complement(1063517..1064389) Haemophilus ducreyi 35000HP 1491201 NP_873735.1 CDS tadB NC_002940.2 1064362 1065249 R tight adherence protein B complement(1064362..1065249) Haemophilus ducreyi 35000HP 1491202 NP_873736.1 CDS tadA NC_002940.2 1065246 1066529 R tight adherence protein A complement(1065246..1066529) Haemophilus ducreyi 35000HP 1491203 NP_873737.1 CDS HD1305 NC_002940.2 1066538 1067659 R flp operon protein D complement(1066538..1067659) Haemophilus ducreyi 35000HP 1491204 NP_873738.1 CDS rcpB NC_002940.2 1067682 1068173 R rough colony protein B complement(1067682..1068173) Haemophilus ducreyi 35000HP 1491205 NP_873739.1 CDS rcpA NC_002940.2 1068170 1069540 R rough colony protein A complement(1068170..1069540) Haemophilus ducreyi 35000HP 1491206 NP_873740.1 CDS HD1308 NC_002940.2 1069540 1070376 R flp operon protein C complement(1069540..1070376) Haemophilus ducreyi 35000HP 1491207 NP_873741.1 CDS HD1309 NC_002940.2 1070407 1070841 R flp operon protein B complement(1070407..1070841) Haemophilus ducreyi 35000HP 1491208 NP_873742.1 CDS flp3 NC_002940.2 1070912 1071181 R flp operon protein Flp3 complement(1070912..1071181) Haemophilus ducreyi 35000HP 1491209 NP_873743.1 CDS flp2 NC_002940.2 1071199 1071444 R flp operon protein Flp2 complement(1071199..1071444) Haemophilus ducreyi 35000HP 1491210 NP_873744.1 CDS flp1 NC_002940.2 1071473 1071730 R flp operon protein Flp1 complement(1071473..1071730) Haemophilus ducreyi 35000HP 1491211 NP_873745.1 CDS HD1313 NC_002940.2 1071787 1071894 D hypothetical protein 1071787..1071894 Haemophilus ducreyi 35000HP 1491212 NP_873746.1 CDS HD1314 NC_002940.2 1071883 1072014 R hypothetical protein complement(1071883..1072014) Haemophilus ducreyi 35000HP 1491213 NP_873747.1 CDS HD1315 NC_002940.2 1072230 1072373 R hypothetical protein complement(1072230..1072373) Haemophilus ducreyi 35000HP 1491214 NP_873748.1 CDS sanA NC_002940.2 1072503 1073195 D SanA protein 1072503..1073195 Haemophilus ducreyi 35000HP 1491215 NP_873749.1 CDS HD1317 NC_002940.2 1073276 1073503 D hypothetical protein 1073276..1073503 Haemophilus ducreyi 35000HP 1491216 NP_873750.1 CDS lysS NC_002940.2 1073627 1075123 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1073627..1075123 Haemophilus ducreyi 35000HP 1491217 NP_873751.1 CDS HD1319 NC_002940.2 1075189 1075854 R integral membrane protein complement(1075189..1075854) Haemophilus ducreyi 35000HP 1491218 NP_873752.1 CDS HD1320 NC_002940.2 1075866 1076690 R integral membrane protein complement(1075866..1076690) Haemophilus ducreyi 35000HP 1491219 NP_873753.1 CDS HD1321 NC_002940.2 1076683 1077294 R hypothetical protein complement(1076683..1077294) Haemophilus ducreyi 35000HP 1491220 NP_873754.1 CDS ispA NC_002940.2 1077316 1078242 R geranyltranstransferase; farnesyl-diphosphate synthase complement(1077316..1078242) Haemophilus ducreyi 35000HP 1491221 NP_873755.1 CDS xseB NC_002940.2 1078211 1078435 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1078211..1078435) Haemophilus ducreyi 35000HP 1491222 NP_873756.1 CDS HD1324 NC_002940.2 1078487 1078594 D hypothetical protein 1078487..1078594 Haemophilus ducreyi 35000HP 1491223 NP_873757.1 CDS HD1325 NC_002940.2 1078607 1080568 D hypothetical protein 1078607..1080568 Haemophilus ducreyi 35000HP 1491224 NP_873758.1 CDS hhdB NC_002940.2 1080829 1082427 D hemolysin activation/secretion protein 1080829..1082427 Haemophilus ducreyi 35000HP 1491225 NP_873759.1 CDS hhdA NC_002940.2 1082511 1086038 D hemolysin 1082511..1086038 Haemophilus ducreyi 35000HP 1491226 NP_873760.1 CDS ispF NC_002940.2 1086553 1087035 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(1086553..1087035) Haemophilus ducreyi 35000HP 1491227 NP_873761.1 CDS ispD NC_002940.2 1087037 1087717 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1087037..1087717) Haemophilus ducreyi 35000HP 1491228 NP_873762.1 CDS HD1330 NC_002940.2 1087731 1088006 R hypothetical protein complement(1087731..1088006) Haemophilus ducreyi 35000HP 1491229 NP_873763.1 CDS pckA NC_002940.2 1088272 1089888 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1088272..1089888 Haemophilus ducreyi 35000HP 1491230 NP_873764.1 CDS LapB NC_002940.2 1089949 1090806 R hypothetical protein complement(1089949..1090806) Haemophilus ducreyi 35000HP 1491231 NP_873765.1 CDS sucB NC_002940.2 1090888 1092099 R pyruvate dehydrogenase E2 component; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex complement(1090888..1092099) Haemophilus ducreyi 35000HP 1491232 NP_873766.1 CDS sucA NC_002940.2 1092185 1095046 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(1092185..1095046) Haemophilus ducreyi 35000HP 1491233 NP_873767.1 CDS znuC NC_002940.2 1095241 1096035 R zinc ABC transporter ATP-binding protein complement(1095241..1096035) Haemophilus ducreyi 35000HP 1491234 NP_873768.1 CDS HD1339 NC_002940.2 1096165 1097721 D hypothetical protein 1096165..1097721 Haemophilus ducreyi 35000HP 1491235 NP_873769.1 CDS dsbC NC_002940.2 1097752 1098447 D thiol:disulfide interchange protein 1097752..1098447 Haemophilus ducreyi 35000HP 1491236 NP_873770.1 CDS recJ NC_002940.2 1098531 1100252 D single-stranded-DNA-specific exonuclease RecJ 1098531..1100252 Haemophilus ducreyi 35000HP 1491237 NP_873771.1 CDS HD1343 NC_002940.2 1100261 1100362 D hypothetical protein 1100261..1100362 Haemophilus ducreyi 35000HP 1491238 NP_873772.1 CDS HD1344 NC_002940.2 1100438 1101262 D hypothetical protein 1100438..1101262 Haemophilus ducreyi 35000HP 1491239 NP_873773.1 CDS HD1348 NC_002940.2 1103152 1103742 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1103152..1103742 Haemophilus ducreyi 35000HP 1491241 NP_873774.1 CDS HD1349 NC_002940.2 1103793 1104110 D hypothetical protein 1103793..1104110 Haemophilus ducreyi 35000HP 1491242 NP_873775.1 CDS degS NC_002940.2 1104201 1105226 D protease DegS 1104201..1105226 Haemophilus ducreyi 35000HP 1491243 NP_873776.1 CDS cmk NC_002940.2 1105257 1105931 D cytidylate kinase; cytidine monophosphate kinase 1105257..1105931 Haemophilus ducreyi 35000HP 1491244 NP_873777.1 CDS rpsA NC_002940.2 1106027 1107694 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1106027..1107694 Haemophilus ducreyi 35000HP 1491245 NP_873778.1 CDS ihfB NC_002940.2 1107771 1108052 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1107771..1108052 Haemophilus ducreyi 35000HP 1491246 NP_873779.1 CDS HD1354 NC_002940.2 1108106 1108393 D hypothetical protein 1108106..1108393 Haemophilus ducreyi 35000HP 1491247 NP_873780.1 CDS HD1355 NC_002940.2 1108393 1109583 D tetratricopeptide repeat protein 1108393..1109583 Haemophilus ducreyi 35000HP 1491248 NP_873781.1 CDS pyrF NC_002940.2 1109619 1110311 D OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1109619..1110311 Haemophilus ducreyi 35000HP 1491249 NP_873782.1 CDS HD1357 NC_002940.2 1110383 1110694 D involved in start site selection during the initiation of translation; translation initiation factor Sui1 1110383..1110694 Haemophilus ducreyi 35000HP 1491250 NP_873783.1 CDS HD1359 NC_002940.2 1110738 1111178 R hypothetical protein complement(1110738..1111178) Haemophilus ducreyi 35000HP 1491251 NP_873784.1 CDS ubiX NC_002940.2 1111191 1111754 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; aromatic acid decarboxylase complement(1111191..1111754) Haemophilus ducreyi 35000HP 1491252 NP_873785.1 CDS HD1361 NC_002940.2 1111824 1112195 R hypothetical protein complement(1111824..1112195) Haemophilus ducreyi 35000HP 1491253 NP_873786.1 CDS HD1362 NC_002940.2 1112231 1112761 R hypothetical protein complement(1112231..1112761) Haemophilus ducreyi 35000HP 1491254 NP_873787.1 CDS pmbA NC_002940.2 1112855 1114204 D antibiotic maturation factor PmbA 1112855..1114204 Haemophilus ducreyi 35000HP 1491255 NP_873788.1 CDS HD1364 NC_002940.2 1114287 1114415 D hypothetical protein 1114287..1114415 Haemophilus ducreyi 35000HP 1491256 NP_873789.1 CDS HD1365 NC_002940.2 1114404 1115087 R carbonic anhydrase complement(1114404..1115087) Haemophilus ducreyi 35000HP 1491257 NP_873790.1 CDS cspD NC_002940.2 1115208 1115414 R cold shock-like protein CspD complement(1115208..1115414) Haemophilus ducreyi 35000HP 1491258 NP_873791.1 CDS HD1367 NC_002940.2 1115522 1116112 R hypothetical protein complement(1115522..1116112) Haemophilus ducreyi 35000HP 1491259 NP_873792.1 CDS tgt NC_002940.2 1116293 1117441 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1116293..1117441 Haemophilus ducreyi 35000HP 1491260 NP_873793.1 CDS HD1369 NC_002940.2 1117526 1118125 R hypothetical protein complement(1117526..1118125) Haemophilus ducreyi 35000HP 1491261 NP_873794.1 CDS HD1370 NC_002940.2 1118195 1119457 R phosphate permease complement(1118195..1119457) Haemophilus ducreyi 35000HP 1491262 NP_873795.1 CDS HD1371 NC_002940.2 1119467 1120147 R hypothetical protein complement(1119467..1120147) Haemophilus ducreyi 35000HP 1491263 NP_873796.1 CDS dnaB2 NC_002940.2 1120452 1121888 D replicative DNA helicase 1120452..1121888 Haemophilus ducreyi 35000HP 1491264 NP_873797.1 CDS HD1373 NC_002940.2 1121866 1122165 D hypothetical protein 1121866..1122165 Haemophilus ducreyi 35000HP 1491265 NP_873798.1 CDS nrdR NC_002940.2 1122165 1122614 D transcriptional regulator NrdR 1122165..1122614 Haemophilus ducreyi 35000HP 1491266 NP_873799.1 CDS lysC NC_002940.2 1122685 1124040 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase complement(1122685..1124040) Haemophilus ducreyi 35000HP 1491267 NP_873800.1 CDS HD1376 NC_002940.2 1124437 1124544 D hypothetical protein 1124437..1124544 Haemophilus ducreyi 35000HP 1491268 NP_873801.1 CDS HD1377 NC_002940.2 1124541 1124876 R hypothetical protein complement(1124541..1124876) Haemophilus ducreyi 35000HP 1491269 NP_873802.1 CDS ppx NC_002940.2 1125045 1126568 D metaphosphatase; exopolyphosphatase 1125045..1126568 Haemophilus ducreyi 35000HP 1491270 NP_873803.1 CDS HD1379 NC_002940.2 1126725 1127192 D hypothetical protein 1126725..1127192 Haemophilus ducreyi 35000HP 1491271 NP_873804.1 CDS HD1380 NC_002940.2 1127211 1128089 D transcriptional regulator 1127211..1128089 Haemophilus ducreyi 35000HP 1491272 NP_873805.1 CDS HD1381 NC_002940.2 1128127 1128252 D hypothetical protein 1128127..1128252 Haemophilus ducreyi 35000HP 1491273 NP_873806.1 CDS serC NC_002940.2 1128236 1129324 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1128236..1129324 Haemophilus ducreyi 35000HP 1491274 NP_873807.1 CDS aroA NC_002940.2 1129395 1130702 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1129395..1130702 Haemophilus ducreyi 35000HP 1491275 NP_873808.1 CDS argA NC_002940.2 1130797 1132110 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 1130797..1132110 Haemophilus ducreyi 35000HP 1491276 NP_873809.1 CDS topA NC_002940.2 1132309 1134912 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1132309..1134912 Haemophilus ducreyi 35000HP 1491277 NP_873810.1 CDS HD1386 NC_002940.2 1134948 1136744 R hypothetical protein complement(1134948..1136744) Haemophilus ducreyi 35000HP 1491278 NP_873811.1 CDS HD1387 NC_002940.2 1136755 1137231 R metalloprotease complement(1136755..1137231) Haemophilus ducreyi 35000HP 1491279 NP_873812.1 CDS moaE NC_002940.2 1137315 1137770 R molybdopterin synthetase subunit 2; molybdopterin converting factor subunit 2 complement(1137315..1137770) Haemophilus ducreyi 35000HP 1491280 NP_873813.1 CDS moaD NC_002940.2 1137772 1138017 R catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit complement(1137772..1138017) Haemophilus ducreyi 35000HP 1491281 NP_873814.1 CDS moaC NC_002940.2 1138043 1138519 R molybdenum cofactor biosynthesis protein C complement(1138043..1138519) Haemophilus ducreyi 35000HP 1491282 NP_873815.1 CDS moaA NC_002940.2 1138583 1139605 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1138583..1139605) Haemophilus ducreyi 35000HP 1491283 NP_873816.1 CDS torY NC_002940.2 1140030 1141148 D cytochrome c-type protein TorY 1140030..1141148 Haemophilus ducreyi 35000HP 1491284 NP_873817.1 CDS torZ NC_002940.2 1141346 1143820 D trimethylamine-N-oxide reductase 2; TMAO reductase 2 1141346..1143820 Haemophilus ducreyi 35000HP 1491285 NP_873818.1 CDS HD1395 NC_002940.2 1143916 1144008 D hypothetical protein 1143916..1144008 Haemophilus ducreyi 35000HP 1491286 NP_873819.2 CDS HD1396 NC_002940.2 1144053 1145039 D RNA 2'-O-ribose methyltransferase 1144053..1145039 Haemophilus ducreyi 35000HP 1491287 NP_873820.1 CDS dapB NC_002940.2 1145196 1146005 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1145196..1146005 Haemophilus ducreyi 35000HP 1491288 NP_873821.1 CDS hpt NC_002940.2 1146084 1146623 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 1146084..1146623 Haemophilus ducreyi 35000HP 1491289 NP_873822.1 CDS HD1400 NC_002940.2 1146724 1148856 D soluble lytic murein transglycosylase 1146724..1148856 Haemophilus ducreyi 35000HP 1491290 NP_873823.1 CDS glnS NC_002940.2 1150589 1152259 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(1150589..1152259) Haemophilus ducreyi 35000HP 1491292 NP_873824.1 CDS HD1405 NC_002940.2 1152428 1152550 R hypothetical protein complement(1152428..1152550) Haemophilus ducreyi 35000HP 1491293 NP_873825.1 CDS efp NC_002940.2 1152557 1153123 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1152557..1153123) Haemophilus ducreyi 35000HP 1491294 NP_873826.1 CDS HD1408 NC_002940.2 1153123 1153227 D hypothetical protein 1153123..1153227 Haemophilus ducreyi 35000HP 1491295 NP_873827.1 CDS HD1409 NC_002940.2 1153275 1153847 D hypothetical protein 1153275..1153847 Haemophilus ducreyi 35000HP 1491296 NP_873828.1 CDS HD1410 NC_002940.2 1153915 1154907 D hypothetical protein 1153915..1154907 Haemophilus ducreyi 35000HP 1491297 NP_873829.1 CDS asnC NC_002940.2 1155010 1156413 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1155010..1156413) Haemophilus ducreyi 35000HP 1491298 NP_873830.1 CDS sbcB NC_002940.2 1156909 1158450 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1156909..1158450 Haemophilus ducreyi 35000HP 1491299 NP_873831.1 CDS HD1413 NC_002940.2 1158472 1159071 D hypothetical protein 1158472..1159071 Haemophilus ducreyi 35000HP 1491300 NP_873832.1 CDS trpH NC_002940.2 1159075 1159902 D metal-dependent phosphoesterase 1159075..1159902 Haemophilus ducreyi 35000HP 1491301 NP_873833.1 CDS uvrB NC_002940.2 1159958 1161985 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1159958..1161985 Haemophilus ducreyi 35000HP 1491302 NP_873834.1 CDS HD1417 NC_002940.2 1162098 1162340 D hypothetical protein 1162098..1162340 Haemophilus ducreyi 35000HP 1491303 NP_873835.1 CDS pepP NC_002940.2 1162475 1163761 D aminopeptidase P II; Xaa-Pro aminopeptidase 1162475..1163761 Haemophilus ducreyi 35000HP 1491304 NP_873836.1 CDS aspC NC_002940.2 1163837 1165027 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1163837..1165027) Haemophilus ducreyi 35000HP 1491305 NP_873837.1 CDS HD1420 NC_002940.2 1165105 1165206 D hypothetical protein 1165105..1165206 Haemophilus ducreyi 35000HP 1491306 NP_873838.1 CDS HD1421 NC_002940.2 1165289 1165609 R phosphoribosylaminoimidazole carboxylase ATPase subunit (C terminal) complement(1165289..1165609) Haemophilus ducreyi 35000HP 1491307 NP_873839.1 CDS HD1422 NC_002940.2 1165789 1165941 R hypothetical protein complement(1165789..1165941) Haemophilus ducreyi 35000HP 1491308 NP_873840.1 CDS HD1423 NC_002940.2 1165928 1166254 R phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1165928..1166254) Haemophilus ducreyi 35000HP 1491309 NP_873841.1 CDS purE NC_002940.2 1166285 1166773 R Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1166285..1166773) Haemophilus ducreyi 35000HP 1491310 NP_873842.1 CDS sspA NC_002940.2 1166987 1167631 D stringent starvation protein A 1166987..1167631 Haemophilus ducreyi 35000HP 1491311 NP_873843.1 CDS sspB NC_002940.2 1167631 1168032 D ClpXP protease specificity-enhancing factor 1167631..1168032 Haemophilus ducreyi 35000HP 1491312 NP_873844.1 CDS hlyX NC_002940.2 1168112 1168879 R Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator complement(1168112..1168879) Haemophilus ducreyi 35000HP 1491313 NP_873845.1 CDS uspA NC_002940.2 1169132 1169557 D universal stress protein A 1169132..1169557 Haemophilus ducreyi 35000HP 1491314 NP_873846.1 CDS alaS NC_002940.2 1169725 1172349 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1169725..1172349 Haemophilus ducreyi 35000HP 1491315 NP_873847.1 CDS csrA NC_002940.2 1172406 1172594 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1172406..1172594 Haemophilus ducreyi 35000HP 1491316 NP_873848.1 CDS galU NC_002940.2 1172605 1173492 D UTP-glucose-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase 1172605..1173492 Haemophilus ducreyi 35000HP 1491317 NP_873849.1 CDS HD1432 NC_002940.2 1173520 1174047 R hypothetical protein complement(1173520..1174047) Haemophilus ducreyi 35000HP 1491318 NP_873850.1 CDS ompP2A NC_002940.2 1174546 1175820 D outer membrane protein P2-like protein 1174546..1175820 Haemophilus ducreyi 35000HP 1491319 NP_873851.1 CDS HD1434 NC_002940.2 1176086 1176184 D hypothetical protein 1176086..1176184 Haemophilus ducreyi 35000HP 1491320 NP_873852.1 CDS ompP2B NC_002940.2 1176194 1177387 D outer membrane protein P2-like protein 1176194..1177387 Haemophilus ducreyi 35000HP 1491321 NP_873853.1 CDS HD1436 NC_002940.2 1177679 1178803 R phage-related secreted protein complement(1177679..1178803) Haemophilus ducreyi 35000HP 1491322 NP_873854.1 CDS HD1437 NC_002940.2 1178815 1179117 R phage-related membrane protein complement(1178815..1179117) Haemophilus ducreyi 35000HP 1491323 NP_873855.1 CDS HD1439 NC_002940.2 1179126 1180271 R hypothetical protein complement(1179126..1180271) Haemophilus ducreyi 35000HP 1491324 NP_873856.1 CDS HD1441 NC_002940.2 1180396 1180617 R hypothetical protein complement(1180396..1180617) Haemophilus ducreyi 35000HP 1491325 NP_873857.1 CDS HD1442 NC_002940.2 1180635 1180877 R hypothetical protein complement(1180635..1180877) Haemophilus ducreyi 35000HP 1491326 NP_873858.1 CDS HD1443 NC_002940.2 1180874 1181200 R single stranded DNA-binding protien complement(1180874..1181200) Haemophilus ducreyi 35000HP 1491327 NP_873859.1 CDS HD1444 NC_002940.2 1181231 1182385 R hypothetical protein complement(1181231..1182385) Haemophilus ducreyi 35000HP 1491328 NP_873860.1 CDS plpR1 NC_002940.2 1182543 1182734 D RstR-like phage repressor protein 1182543..1182734 Haemophilus ducreyi 35000HP 1491329 NP_873861.1 CDS HD1445 NC_002940.2 1182724 1183227 D hypothetical protein 1182724..1183227 Haemophilus ducreyi 35000HP 1491330 NP_873862.1 CDS HD1446 NC_002940.2 1183331 1183618 R hypothetical protein complement(1183331..1183618) Haemophilus ducreyi 35000HP 1491331 NP_873863.1 CDS nadV1 NC_002940.2 1183859 1185346 D nicotinate phosphoribosyltransferase 1183859..1185346 Haemophilus ducreyi 35000HP 1491332 NP_873864.1 CDS HD1449 NC_002940.2 1185963 1186184 R hypothetical protein complement(1185963..1186184) Haemophilus ducreyi 35000HP 1491333 NP_873865.1 CDS HD1450 NC_002940.2 1186202 1186444 R hypothetical protein complement(1186202..1186444) Haemophilus ducreyi 35000HP 1491334 NP_873866.1 CDS HD1451 NC_002940.2 1186441 1186767 R hypothetical protein complement(1186441..1186767) Haemophilus ducreyi 35000HP 1491335 NP_873867.1 CDS HD1452 NC_002940.2 1186798 1187964 R hypothetical protein complement(1186798..1187964) Haemophilus ducreyi 35000HP 1491336 NP_873868.1 CDS plpR2 NC_002940.2 1188110 1188301 D RstR-like phage repressor protein 1188110..1188301 Haemophilus ducreyi 35000HP 1491337 NP_873869.1 CDS HD1453 NC_002940.2 1188291 1188794 D hypothetical protein 1188291..1188794 Haemophilus ducreyi 35000HP 1491338 NP_873870.1 CDS HD1454 NC_002940.2 1188898 1189185 R hypothetical protein complement(1188898..1189185) Haemophilus ducreyi 35000HP 1491339 NP_873871.1 CDS nadV2 NC_002940.2 1189426 1190913 D nicotinate phosphoribosyltransferase 1189426..1190913 Haemophilus ducreyi 35000HP 1491340 NP_873872.1 CDS ackA NC_002940.2 1191116 1192318 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1191116..1192318 Haemophilus ducreyi 35000HP 1491341 NP_873873.1 CDS pta NC_002940.2 1192390 1194528 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 1192390..1194528 Haemophilus ducreyi 35000HP 1491342 NP_873874.1 CDS truB NC_002940.2 1194634 1195551 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1194634..1195551) Haemophilus ducreyi 35000HP 1491343 NP_873875.1 CDS rbfA NC_002940.2 1195555 1195935 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1195555..1195935) Haemophilus ducreyi 35000HP 1491344 NP_873876.1 CDS infB NC_002940.2 1195996 1198515 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1195996..1198515) Haemophilus ducreyi 35000HP 1491345 NP_873877.1 CDS nusA NC_002940.2 1198537 1200018 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1198537..1200018) Haemophilus ducreyi 35000HP 1491346 NP_873878.1 CDS HD1463 NC_002940.2 1200035 1200499 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1200035..1200499) Haemophilus ducreyi 35000HP 1491347 NP_873879.1 CDS folC NC_002940.2 1200963 1202264 R bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(1200963..1202264) Haemophilus ducreyi 35000HP 1491349 NP_873880.1 CDS accD NC_002940.2 1202264 1203154 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(1202264..1203154) Haemophilus ducreyi 35000HP 1491350 NP_873881.1 CDS mazG NC_002940.2 1203517 1204314 D MazG protein 1203517..1204314 Haemophilus ducreyi 35000HP 1491351 NP_873882.1 CDS cpxR NC_002940.2 1204379 1205101 D transcriptional regulatory protein CpxR 1204379..1205101 Haemophilus ducreyi 35000HP 1491352 NP_873883.1 CDS cpxA NC_002940.2 1205164 1206558 D part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 1205164..1206558 Haemophilus ducreyi 35000HP 1491353 NP_873884.1 CDS HD1471 NC_002940.2 1206644 1207417 D hypothetical protein 1206644..1207417 Haemophilus ducreyi 35000HP 1491354 NP_873885.1 CDS HD1472 NC_002940.2 1207580 1207798 D hypothetical protein 1207580..1207798 Haemophilus ducreyi 35000HP 1491355 NP_873886.1 CDS tdk NC_002940.2 1207853 1208449 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1207853..1208449 Haemophilus ducreyi 35000HP 1491356 NP_873887.1 CDS HD1474 NC_002940.2 1208489 1209181 R hypothetical protein complement(1208489..1209181) Haemophilus ducreyi 35000HP 1491357 NP_873888.1 CDS aroG NC_002940.2 1209216 1210328 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1209216..1210328) Haemophilus ducreyi 35000HP 1491358 NP_873889.1 CDS ftsK NC_002940.2 1210578 1213451 R cell division protein FtsK complement(1210578..1213451) Haemophilus ducreyi 35000HP 1491359 NP_873890.1 CDS lrp NC_002940.2 1213455 1213937 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(1213455..1213937) Haemophilus ducreyi 35000HP 1491360 NP_873891.1 CDS rnd NC_002940.2 1214014 1215135 R ribonuclease D complement(1214014..1215135) Haemophilus ducreyi 35000HP 1491361 NP_873892.1 CDS mlc NC_002940.2 1215283 1216515 D transcriptional repressor of carbohydrate metabolism; PTS operon 1215283..1216515 Haemophilus ducreyi 35000HP 1491362 NP_873893.1 CDS bioD NC_002940.2 1216452 1217288 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1216452..1217288 Haemophilus ducreyi 35000HP 1491363 NP_873894.1 CDS HD1481 NC_002940.2 1217485 1218000 R lipoprotein complement(1217485..1218000) Haemophilus ducreyi 35000HP 1491364 NP_873895.1 CDS ihfA NC_002940.2 1218059 1218355 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(1218059..1218355) Haemophilus ducreyi 35000HP 1491365 NP_873896.1 CDS pheT NC_002940.2 1218371 1220758 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1218371..1220758) Haemophilus ducreyi 35000HP 1491366 NP_873897.1 CDS pheS NC_002940.2 1220830 1221813 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1220830..1221813) Haemophilus ducreyi 35000HP 1491367 NP_873898.1 CDS frxA NC_002940.2 1222071 1222733 D NAD(P)H nitroreductase 1222071..1222733 Haemophilus ducreyi 35000HP 1491368 NP_873899.1 CDS HD1486 NC_002940.2 1222797 1223570 R hypothetical protein complement(1222797..1223570) Haemophilus ducreyi 35000HP 1491369 NP_873900.1 CDS HD1487 NC_002940.2 1223551 1224474 R transmembrane efflux protein complement(1223551..1224474) Haemophilus ducreyi 35000HP 1491370 NP_873901.1 CDS HD1489 NC_002940.2 1224502 1225041 R hypothetical protein complement(1224502..1225041) Haemophilus ducreyi 35000HP 1491371 NP_873902.1 CDS rpsI NC_002940.2 1225929 1226324 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1225929..1226324) Haemophilus ducreyi 35000HP 1491373 NP_873903.1 CDS rplM NC_002940.2 1226341 1226763 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1226341..1226763) Haemophilus ducreyi 35000HP 1491374 NP_873904.1 CDS HD1495 NC_002940.2 1227071 1227457 D hypothetical protein 1227071..1227457 Haemophilus ducreyi 35000HP 1491375 NP_873905.1 CDS tyrP NC_002940.2 1230139 1231356 R tyrosine-specific transport protein complement(1230139..1231356) Haemophilus ducreyi 35000HP 1491377 NP_873906.1 CDS ftsH NC_002940.2 1231553 1233472 R cell division protein, FtsH complement(1231553..1233472) Haemophilus ducreyi 35000HP 1491378 NP_873907.1 CDS rrmJ NC_002940.2 1233514 1234140 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase complement(1233514..1234140) Haemophilus ducreyi 35000HP 1491379 NP_873908.1 CDS HD1502 NC_002940.2 1234292 1234387 R hypothetical protein complement(1234292..1234387) Haemophilus ducreyi 35000HP 1491380 NP_873909.1 CDS guaB NC_002940.2 1234410 1235873 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1234410..1235873 Haemophilus ducreyi 35000HP 1491381 NP_873910.1 CDS guaA NC_002940.2 1236023 1237594 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1236023..1237594 Haemophilus ducreyi 35000HP 1491382 NP_873911.1 CDS lspA1 NC_002940.2 1237841 1250299 R large supernatant protein 1 complement(1237841..1250299) Haemophilus ducreyi 35000HP 1491383 NP_873912.1 CDS manB NC_002940.2 1250848 1252509 R phosphomannomutase complement(1250848..1252509) Haemophilus ducreyi 35000HP 1491384 NP_873913.1 CDS glmU NC_002940.2 1253431 1254801 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(1253431..1254801) Haemophilus ducreyi 35000HP 1491386 NP_873914.1 CDS HD1512 NC_002940.2 1254919 1258029 R acriflavine resistance protein complement(1254919..1258029) Haemophilus ducreyi 35000HP 1491387 NP_873915.1 CDS HD1513 NC_002940.2 1258043 1259359 R RND efflux membrane fusion protein complement(1258043..1259359) Haemophilus ducreyi 35000HP 1491388 NP_873916.1 CDS HD1515 NC_002940.2 1259924 1260145 D hypothetical protein 1259924..1260145 Haemophilus ducreyi 35000HP 1491389 NP_873917.1 CDS HD1516 NC_002940.2 1260148 1261878 D sulfatase 1260148..1261878 Haemophilus ducreyi 35000HP 1491390 NP_873918.1 CDS HD1517 NC_002940.2 1262080 1262430 R hypothetical protein complement(1262080..1262430) Haemophilus ducreyi 35000HP 1491391 NP_873919.1 CDS HD1518 NC_002940.2 1262548 1262949 R hypothetical protein complement(1262548..1262949) Haemophilus ducreyi 35000HP 1491392 NP_873920.1 CDS HD1519 NC_002940.2 1262939 1263313 R hypothetical protein complement(1262939..1263313) Haemophilus ducreyi 35000HP 1491393 NP_873921.1 CDS HD1520 NC_002940.2 1263295 1263771 R hypothetical protein complement(1263295..1263771) Haemophilus ducreyi 35000HP 1491394 NP_873922.1 CDS HD1522 NC_002940.2 1263755 1263874 R hypothetical protein complement(1263755..1263874) Haemophilus ducreyi 35000HP 1491395 NP_873923.1 CDS HD1523 NC_002940.2 1263817 1263978 R hypothetical protein complement(1263817..1263978) Haemophilus ducreyi 35000HP 1491396 NP_873924.1 CDS HD1524 NC_002940.2 1263975 1264187 R hypothetical protein complement(1263975..1264187) Haemophilus ducreyi 35000HP 1491397 NP_873925.1 CDS gam NC_002940.2 1264184 1264708 R mu-phage host-nuclease inhibitor protein complement(1264184..1264708) Haemophilus ducreyi 35000HP 1491398 NP_873926.1 CDS HD1526 NC_002940.2 1264683 1264913 R hypothetical protein complement(1264683..1264913) Haemophilus ducreyi 35000HP 1491399 NP_873927.1 CDS HD1528 NC_002940.2 1264906 1266111 R Eha protein complement(1264906..1266111) Haemophilus ducreyi 35000HP 1491400 NP_873928.1 CDS HD1529 NC_002940.2 1266101 1267366 R hypothetical protein complement(1266101..1267366) Haemophilus ducreyi 35000HP 1491401 NP_873929.1 CDS HD1530 NC_002940.2 1267353 1267931 R hypothetical protein complement(1267353..1267931) Haemophilus ducreyi 35000HP 1491402 NP_873930.1 CDS HD1532 NC_002940.2 1267912 1268874 R hypothetical protein complement(1267912..1268874) Haemophilus ducreyi 35000HP 1491403 NP_873931.1 CDS HD1533 NC_002940.2 1268904 1269206 R hypothetical protein complement(1268904..1269206) Haemophilus ducreyi 35000HP 1491404 NP_873932.1 CDS HD1534 NC_002940.2 1269208 1269330 R hypothetical protein complement(1269208..1269330) Haemophilus ducreyi 35000HP 1491405 NP_873933.1 CDS HD1535 NC_002940.2 1269386 1269691 D hypothetical protein 1269386..1269691 Haemophilus ducreyi 35000HP 1491406 NP_873934.1 CDS HD1537 NC_002940.2 1269748 1269849 R hypothetical protein complement(1269748..1269849) Haemophilus ducreyi 35000HP 1491407 NP_873935.1 CDS HD1538 NC_002940.2 1269856 1270050 R hypothetical protein complement(1269856..1270050) Haemophilus ducreyi 35000HP 1491408 NP_873936.1 CDS HD1539 NC_002940.2 1270078 1270170 R hypothetical protein complement(1270078..1270170) Haemophilus ducreyi 35000HP 1491409 NP_873937.1 CDS HD1540 NC_002940.2 1270186 1270656 D hypothetical protein 1270186..1270656 Haemophilus ducreyi 35000HP 1491410 NP_873938.1 CDS HD1541 NC_002940.2 1270657 1271076 D hypothetical protein 1270657..1271076 Haemophilus ducreyi 35000HP 1491411 NP_873939.1 CDS HD1542 NC_002940.2 1271098 1271616 D hypothetical protein 1271098..1271616 Haemophilus ducreyi 35000HP 1491412 NP_873940.1 CDS HD1543 NC_002940.2 1271652 1272455 D hypothetical protein 1271652..1272455 Haemophilus ducreyi 35000HP 1491413 NP_873941.1 CDS HD1545 NC_002940.2 1272449 1272697 D hypothetical protein 1272449..1272697 Haemophilus ducreyi 35000HP 1491414 NP_873942.1 CDS HD1546 NC_002940.2 1272694 1273149 D hypothetical protein 1272694..1273149 Haemophilus ducreyi 35000HP 1491415 NP_873943.1 CDS HD1547 NC_002940.2 1273271 1273603 R hypothetical protein complement(1273271..1273603) Haemophilus ducreyi 35000HP 1491416 NP_873944.1 CDS HD1548 NC_002940.2 1273742 1274116 D hypothetical protein 1273742..1274116 Haemophilus ducreyi 35000HP 1491417 NP_873945.1 CDS HD1549 NC_002940.2 1274119 1274727 D hypothetical protein 1274119..1274727 Haemophilus ducreyi 35000HP 1491418 NP_873946.1 CDS HD1550 NC_002940.2 1274712 1275152 D hypothetical protein 1274712..1275152 Haemophilus ducreyi 35000HP 1491419 NP_873947.1 CDS HD1552 NC_002940.2 1275255 1275605 D hypothetical protein 1275255..1275605 Haemophilus ducreyi 35000HP 1491420 NP_873948.1 CDS HD1553 NC_002940.2 1275607 1275912 D hypothetical protein 1275607..1275912 Haemophilus ducreyi 35000HP 1491421 NP_873949.1 CDS HD1554 NC_002940.2 1275922 1276461 D bacteriophage Mu GP27-like protein 1275922..1276461 Haemophilus ducreyi 35000HP 1491422 NP_873950.1 CDS HD1555 NC_002940.2 1276461 1278080 D bacteriophage Mu GP28-like protein 1276461..1278080 Haemophilus ducreyi 35000HP 1491423 NP_873951.1 CDS HD1556 NC_002940.2 1278083 1279594 D hypothetical protein 1278083..1279594 Haemophilus ducreyi 35000HP 1491424 NP_873952.1 CDS HD1557 NC_002940.2 1279587 1280837 D bacteriophage Mu GP30-like protein 1279587..1280837 Haemophilus ducreyi 35000HP 1491425 NP_873953.1 CDS HD1558 NC_002940.2 1280944 1281435 D bacteriophage Mu G-like protein 1280944..1281435 Haemophilus ducreyi 35000HP 1491426 NP_873954.1 CDS HD1559 NC_002940.2 1281658 1282674 D hypothetical protein 1281658..1282674 Haemophilus ducreyi 35000HP 1491427 NP_873955.1 CDS HD1560 NC_002940.2 1282671 1283039 D hypothetical protein 1282671..1283039 Haemophilus ducreyi 35000HP 1491428 NP_873956.1 CDS HD1561 NC_002940.2 1283090 1284016 D hypothetical protein 1283090..1284016 Haemophilus ducreyi 35000HP 1491429 NP_873957.1 CDS HD1562 NC_002940.2 1284025 1284534 D hypothetical protein 1284025..1284534 Haemophilus ducreyi 35000HP 1491430 NP_873958.1 CDS HD1563 NC_002940.2 1284587 1284979 D hypothetical protein 1284587..1284979 Haemophilus ducreyi 35000HP 1491431 NP_873959.1 CDS HD1564 NC_002940.2 1284976 1285233 D hypothetical protein 1284976..1285233 Haemophilus ducreyi 35000HP 1491432 NP_873960.1 CDS HD1565 NC_002940.2 1285233 1285976 D hypothetical protein 1285233..1285976 Haemophilus ducreyi 35000HP 1491433 NP_873961.1 CDS HD1567 NC_002940.2 1286034 1286453 D hypothetical protein 1286034..1286453 Haemophilus ducreyi 35000HP 1491434 NP_873962.1 CDS HD1568 NC_002940.2 1286630 1286884 R hypothetical protein complement(1286630..1286884) Haemophilus ducreyi 35000HP 1491435 NP_873963.1 CDS HD1569 NC_002940.2 1286899 1290258 D tail length tape measure protein 1286899..1290258 Haemophilus ducreyi 35000HP 1491436 NP_873964.1 CDS HD1571 NC_002940.2 1290258 1291256 D hypothetical protein 1290258..1291256 Haemophilus ducreyi 35000HP 1491437 NP_873965.1 CDS HD1572 NC_002940.2 1291259 1292158 D hypothetical protein 1291259..1292158 Haemophilus ducreyi 35000HP 1491438 NP_873966.1 CDS HD1573 NC_002940.2 1292224 1292913 D hypothetical protein 1292224..1292913 Haemophilus ducreyi 35000HP 1491439 NP_873967.1 CDS HD1574 NC_002940.2 1292919 1293905 D hypothetical protein 1292919..1293905 Haemophilus ducreyi 35000HP 1491440 NP_873968.1 CDS HD1575 NC_002940.2 1293950 1294474 D hypothetical protein 1293950..1294474 Haemophilus ducreyi 35000HP 1491441 NP_873969.1 CDS HD1576 NC_002940.2 1294594 1294758 D hypothetical protein 1294594..1294758 Haemophilus ducreyi 35000HP 1491442 NP_873970.1 CDS HD1577 NC_002940.2 1294771 1295022 D hypothetical protein 1294771..1295022 Haemophilus ducreyi 35000HP 1491443 NP_873971.1 CDS HD1578 NC_002940.2 1295040 1295243 D hypothetical protein 1295040..1295243 Haemophilus ducreyi 35000HP 1491444 NP_873972.1 CDS HD1580 NC_002940.2 1295243 1298032 D hypothetical protein 1295243..1298032 Haemophilus ducreyi 35000HP 1491445 NP_873973.1 CDS HD1581 NC_002940.2 1298136 1299062 D hypothetical protein 1298136..1299062 Haemophilus ducreyi 35000HP 1491446 NP_873974.1 CDS mukB NC_002940.2 1299264 1303775 R SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB complement(1299264..1303775) Haemophilus ducreyi 35000HP 1491447 NP_873975.1 CDS mukE NC_002940.2 1303775 1304491 R acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E complement(1303775..1304491) Haemophilus ducreyi 35000HP 1491448 NP_873976.1 CDS mukF NC_002940.2 1304504 1305835 R acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F complement(1304504..1305835) Haemophilus ducreyi 35000HP 1491449 NP_873977.1 CDS HD1586 NC_002940.2 1305851 1305952 R hypothetical protein complement(1305851..1305952) Haemophilus ducreyi 35000HP 1491450 NP_873978.1 CDS parC NC_002940.2 1305968 1308214 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1305968..1308214) Haemophilus ducreyi 35000HP 1491451 NP_873979.1 CDS pnp NC_002940.2 1308506 1310644 D polynucleotide phosphorylase 1308506..1310644 Haemophilus ducreyi 35000HP 1491452 NP_873980.1 CDS nlpI NC_002940.2 1310704 1311636 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1310704..1311636 Haemophilus ducreyi 35000HP 1491453 NP_873981.1 CDS deaD NC_002940.2 1311864 1313684 D cold-shock DEAD box protein-A; ATP-dependent RNA helicase 1311864..1313684 Haemophilus ducreyi 35000HP 1491454 NP_873982.1 CDS HD1591 NC_002940.2 1313738 1314289 D hypothetical protein 1313738..1314289 Haemophilus ducreyi 35000HP 1491455 NP_873983.1 CDS HD1592 NC_002940.2 1314325 1314894 R with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT complement(1314325..1314894) Haemophilus ducreyi 35000HP 1491456 NP_873984.1 CDS HD1593 NC_002940.2 1314894 1315781 R with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS complement(1314894..1315781) Haemophilus ducreyi 35000HP 1491457 NP_873985.1 CDS HD1594 NC_002940.2 1315881 1315994 D hypothetical protein 1315881..1315994 Haemophilus ducreyi 35000HP 1491458 NP_873986.1 CDS HD1595 NC_002940.2 1315981 1317282 D GntR family transcriptional regulator 1315981..1317282 Haemophilus ducreyi 35000HP 1491459 NP_873987.1 CDS frr NC_002940.2 1317344 1317901 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1317344..1317901) Haemophilus ducreyi 35000HP 1491460 NP_873988.1 CDS pyrH NC_002940.2 1318115 1318828 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1318115..1318828) Haemophilus ducreyi 35000HP 1491461 NP_873989.1 CDS HD1598 NC_002940.2 1318942 1320525 D hypothetical protein 1318942..1320525 Haemophilus ducreyi 35000HP 1491462 NP_873990.1 CDS tsf NC_002940.2 1320591 1321442 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1320591..1321442) Haemophilus ducreyi 35000HP 1491463 NP_873991.1 CDS rpsB NC_002940.2 1321542 1322258 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1321542..1322258) Haemophilus ducreyi 35000HP 1491464 NP_873992.1 CDS HD1601 NC_002940.2 1322581 1324056 R hypothetical protein complement(1322581..1324056) Haemophilus ducreyi 35000HP 1491465 NP_873993.1 CDS recO NC_002940.2 1325435 1326157 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(1325435..1326157) Haemophilus ducreyi 35000HP 1491467 NP_873994.1 CDS era NC_002940.2 1326173 1327087 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1326173..1327087) Haemophilus ducreyi 35000HP 1491468 NP_873995.1 CDS rnc NC_002940.2 1327164 1327832 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1327164..1327832) Haemophilus ducreyi 35000HP 1491469 NP_873996.1 CDS lepB NC_002940.2 1327844 1328803 R signal peptidase I; SPase I complement(1327844..1328803) Haemophilus ducreyi 35000HP 1491470 NP_873997.1 CDS lepA NC_002940.2 1328888 1330687 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1328888..1330687) Haemophilus ducreyi 35000HP 1491471 NP_873998.1 CDS HD1609 NC_002940.2 1330900 1331271 D hypothetical protein 1330900..1331271 Haemophilus ducreyi 35000HP 1491472 NP_873999.1 CDS HD1610 NC_002940.2 1331135 1331338 R hypothetical protein complement(1331135..1331338) Haemophilus ducreyi 35000HP 1491473 NP_874000.1 CDS HD1611 NC_002940.2 1331323 1331763 R hypothetical protein complement(1331323..1331763) Haemophilus ducreyi 35000HP 1491474 NP_874001.1 CDS HD1612 NC_002940.2 1331754 1332791 R transposase complement(1331754..1332791) Haemophilus ducreyi 35000HP 1491475 NP_874002.1 CDS HD1613 NC_002940.2 1332901 1333236 D hypothetical protein 1332901..1333236 Haemophilus ducreyi 35000HP 1491476 NP_874003.1 CDS HD1614 NC_002940.2 1333199 1333597 D prophage ps3 protein01-like protein 1333199..1333597 Haemophilus ducreyi 35000HP 1491477 NP_874004.1 CDS HD1615 NC_002940.2 1333657 1333854 D hypothetical protein 1333657..1333854 Haemophilus ducreyi 35000HP 1491478 NP_874005.1 CDS HD1616 NC_002940.2 1334298 1335362 D transposase 1334298..1335362 Haemophilus ducreyi 35000HP 1491479 NP_874006.1 CDS HD1617 NC_002940.2 1335375 1335755 D hypothetical protein 1335375..1335755 Haemophilus ducreyi 35000HP 1491480 NP_874007.1 CDS HD1618 NC_002940.2 1335789 1336304 D hypothetical protein 1335789..1336304 Haemophilus ducreyi 35000HP 1491481 NP_874008.1 CDS HD1619 NC_002940.2 1336482 1337930 R sodium/alanine symporter complement(1336482..1337930) Haemophilus ducreyi 35000HP 1491482 NP_874009.1 CDS HD1621 NC_002940.2 1338012 1339004 R hypothetical protein complement(1338012..1339004) Haemophilus ducreyi 35000HP 1491483 NP_874010.1 CDS HD1622 NC_002940.2 1338995 1339639 R hypothetical protein complement(1338995..1339639) Haemophilus ducreyi 35000HP 1491484 NP_874011.1 CDS lpdA NC_002940.2 1340628 1342052 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1340628..1342052) Haemophilus ducreyi 35000HP 1491487 NP_874012.1 CDS aceF NC_002940.2 1342118 1343689 R dihydrolipoamide acetyltransferase complement(1342118..1343689) Haemophilus ducreyi 35000HP 1491488 NP_874013.1 CDS aceE NC_002940.2 1343768 1346425 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(1343768..1346425) Haemophilus ducreyi 35000HP 1491489 NP_874014.1 CDS pyrD NC_002940.2 1346764 1347771 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(1346764..1347771) Haemophilus ducreyi 35000HP 1491490 NP_874015.1 CDS prsA NC_002940.2 1347890 1348840 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(1347890..1348840) Haemophilus ducreyi 35000HP 1491491 NP_874016.1 CDS ipk NC_002940.2 1348871 1349719 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1348871..1349719) Haemophilus ducreyi 35000HP 1491492 NP_874017.1 CDS lolB NC_002940.2 1349720 1350349 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB complement(1349720..1350349) Haemophilus ducreyi 35000HP 1491493 NP_874018.1 CDS msbA NC_002940.2 1350494 1352242 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease complement(1350494..1352242) Haemophilus ducreyi 35000HP 1491494 NP_874019.1 CDS cafA NC_002940.2 1352312 1353784 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(1352312..1353784) Haemophilus ducreyi 35000HP 1491495 NP_874020.1 CDS HD1632 NC_002940.2 1354078 1355040 D hypothetical protein 1354078..1355040 Haemophilus ducreyi 35000HP 1491496 NP_874021.1 CDS HD1634 NC_002940.2 1355068 1355415 D hypothetical protein 1355068..1355415 Haemophilus ducreyi 35000HP 1491497 NP_874022.1 CDS HD1633 NC_002940.2 1355283 1355405 D hypothetical protein 1355283..1355405 Haemophilus ducreyi 35000HP 1491498 NP_874023.1 CDS mltA NC_002940.2 1355481 1356587 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A complement(1355481..1356587) Haemophilus ducreyi 35000HP 1491499 NP_874024.1 CDS HD1639 NC_002940.2 1359265 1360473 D hypothetical protein 1359265..1360473 Haemophilus ducreyi 35000HP 1491503 NP_874025.1 CDS HD1640 NC_002940.2 1360475 1360696 R hypothetical protein complement(1360475..1360696) Haemophilus ducreyi 35000HP 1491504 NP_874026.1 CDS purR NC_002940.2 1361011 1362030 D binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 1361011..1362030 Haemophilus ducreyi 35000HP 1491505 NP_874027.1 CDS HD1642 NC_002940.2 1362033 1362638 D DedA family integral membrane protein 1362033..1362638 Haemophilus ducreyi 35000HP 1491506 NP_874028.1 CDS gyrB NC_002940.2 1362720 1365152 R Type II topoisomerase; DNA gyrase subunit B complement(1362720..1365152) Haemophilus ducreyi 35000HP 1491507 NP_874029.1 CDS HD1644 NC_002940.2 1365131 1365325 D hypothetical protein 1365131..1365325 Haemophilus ducreyi 35000HP 1491508 NP_874030.1 CDS HD1645 NC_002940.2 1365248 1365364 R hypothetical protein complement(1365248..1365364) Haemophilus ducreyi 35000HP 1491509 NP_874031.1 CDS HD1646 NC_002940.2 1365322 1365444 D hypothetical protein 1365322..1365444 Haemophilus ducreyi 35000HP 1491510 NP_874032.1 CDS ubiA NC_002940.2 1365484 1366317 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(1365484..1366317) Haemophilus ducreyi 35000HP 1491511 NP_874033.1 CDS glpR NC_002940.2 1366367 1367128 R glycerol-3-phosphate regulon repressor complement(1366367..1367128) Haemophilus ducreyi 35000HP 1491512 NP_874034.1 CDS purB NC_002940.2 1367205 1368572 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1367205..1368572) Haemophilus ducreyi 35000HP 1491513 NP_874035.1 CDS HD1650 NC_002940.2 1368614 1369261 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1368614..1369261) Haemophilus ducreyi 35000HP 1491514 NP_874036.1 CDS cydC NC_002940.2 1369377 1371050 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1369377..1371050) Haemophilus ducreyi 35000HP 1491515 NP_874037.1 CDS cydD NC_002940.2 1371089 1372828 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1371089..1372828) Haemophilus ducreyi 35000HP 1491516 NP_874038.1 CDS HD1653 NC_002940.2 1372845 1372991 R hypothetical protein complement(1372845..1372991) Haemophilus ducreyi 35000HP 1491517 NP_874039.1 CDS HD1654 NC_002940.2 1372978 1376931 R hypothetical protein complement(1372978..1376931) Haemophilus ducreyi 35000HP 1491518 NP_874040.1 CDS HD1655 NC_002940.2 1376947 1378755 R hypothetical protein complement(1376947..1378755) Haemophilus ducreyi 35000HP 1491519 NP_874041.1 CDS HD1658 NC_002940.2 1379662 1380897 R hypothetical protein complement(1379662..1380897) Haemophilus ducreyi 35000HP 1491521 NP_874042.1 CDS gpmA NC_002940.2 1381058 1381741 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1381058..1381741 Haemophilus ducreyi 35000HP 1491522 NP_874043.1 CDS udk NC_002940.2 1381939 1382592 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1381939..1382592 Haemophilus ducreyi 35000HP 1491523 NP_874044.1 CDS dcd NC_002940.2 1382601 1383185 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1382601..1383185 Haemophilus ducreyi 35000HP 1491524 NP_874045.1 CDS pntB NC_002940.2 1383308 1384756 R catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase complement(1383308..1384756) Haemophilus ducreyi 35000HP 1491525 NP_874046.1 CDS pntA NC_002940.2 1384769 1386304 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(1384769..1386304) Haemophilus ducreyi 35000HP 1491526 NP_874047.1 CDS HD1664 NC_002940.2 1386544 1387272 D tRNA/rRNA methyltransferase 1386544..1387272 Haemophilus ducreyi 35000HP 1491527 NP_874048.1 CDS queF NC_002940.2 1387399 1388238 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1387399..1388238) Haemophilus ducreyi 35000HP 1491528 NP_874049.1 CDS HD1666 NC_002940.2 1388251 1388799 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(1388251..1388799) Haemophilus ducreyi 35000HP 1491529 NP_874050.1 CDS bcp NC_002940.2 1388799 1389269 R bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase complement(1388799..1389269) Haemophilus ducreyi 35000HP 1491530 NP_874051.1 CDS HD1668 NC_002940.2 1389341 1390525 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1389341..1390525) Haemophilus ducreyi 35000HP 1491531 NP_874052.1 CDS HD1669 NC_002940.2 1390763 1392340 D ABC transporter substrate-binding protein 1390763..1392340 Haemophilus ducreyi 35000HP 1491532 NP_874053.1 CDS HD1670 NC_002940.2 1392558 1393511 D ABC transporter permease 1392558..1393511 Haemophilus ducreyi 35000HP 1491533 NP_874054.1 CDS HD1671 NC_002940.2 1393511 1395466 D ABC transporter ATPase and permease 1393511..1395466 Haemophilus ducreyi 35000HP 1491534 NP_874055.1 CDS HD1672 NC_002940.2 1395496 1396302 D ABC transporter ATP-binding protein 1395496..1396302 Haemophilus ducreyi 35000HP 1491535 NP_874056.1 CDS HD1678 NC_002940.2 1398421 1399287 R integral membrane protein complement(1398421..1399287) Haemophilus ducreyi 35000HP 1491537 NP_874057.1 CDS HD1679 NC_002940.2 1399426 1399959 R hypothetical protein complement(1399426..1399959) Haemophilus ducreyi 35000HP 1491538 NP_874058.1 CDS bioD NC_002940.2 1399956 1400591 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(1399956..1400591) Haemophilus ducreyi 35000HP 1491539 NP_874059.1 CDS bioC NC_002940.2 1400584 1401360 R biotin synthesis protein complement(1400584..1401360) Haemophilus ducreyi 35000HP 1491540 NP_874060.1 CDS HD1682 NC_002940.2 1401348 1402016 R hypothetical protein complement(1401348..1402016) Haemophilus ducreyi 35000HP 1491541 NP_874061.1 CDS bioF NC_002940.2 1402029 1403192 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(1402029..1403192) Haemophilus ducreyi 35000HP 1491542 NP_874062.1 CDS bioA NC_002940.2 1403276 1404589 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1403276..1404589) Haemophilus ducreyi 35000HP 1491543 NP_874063.1 CDS HD1686 NC_002940.2 1404680 1405624 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1404680..1405624 Haemophilus ducreyi 35000HP 1491544 NP_874064.1 CDS HD1687 NC_002940.2 1405599 1405703 R hypothetical protein complement(1405599..1405703) Haemophilus ducreyi 35000HP 1491545 NP_874065.1 CDS HD1688 NC_002940.2 1405788 1406279 R hypothetical protein complement(1405788..1406279) Haemophilus ducreyi 35000HP 1491546 NP_874066.1 CDS HD1689 NC_002940.2 1406296 1407387 R transposase complement(1406296..1407387) Haemophilus ducreyi 35000HP 1491547 NP_874067.1 CDS HD1690 NC_002940.2 1407737 1410367 R type III restriction enzyme complement(1407737..1410367) Haemophilus ducreyi 35000HP 1491548 NP_874068.1 CDS HD1694 NC_002940.2 1412498 1412833 R hypothetical protein complement(1412498..1412833) Haemophilus ducreyi 35000HP 1491550 NP_874069.1 CDS HD1695 NC_002940.2 1412935 1413402 D transposase 1412935..1413402 Haemophilus ducreyi 35000HP 1491551 NP_874070.1 CDS HD1696 NC_002940.2 1413380 1413973 D hypothetical protein 1413380..1413973 Haemophilus ducreyi 35000HP 1491552 NP_874071.1 CDS HD1697 NC_002940.2 1413982 1414404 D hypothetical protein 1413982..1414404 Haemophilus ducreyi 35000HP 1491553 NP_874072.1 CDS HD1698 NC_002940.2 1414433 1414909 R hypothetical protein complement(1414433..1414909) Haemophilus ducreyi 35000HP 1491554 NP_874073.1 CDS greA NC_002940.2 1415040 1415516 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1415040..1415516) Haemophilus ducreyi 35000HP 1491555 NP_874074.1 CDS purH NC_002940.2 1417347 1418735 D bifunctional purine biosynthesis protein, N-terminal truncated 1417347..1418735 Haemophilus ducreyi 35000HP 1491557 NP_874075.1 CDS imp NC_002940.2 1418783 1421122 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(1418783..1421122) Haemophilus ducreyi 35000HP 1491558 NP_874076.1 CDS HD1705 NC_002940.2 1421191 1421661 R coproporphyrinogen III oxidase complement(1421191..1421661) Haemophilus ducreyi 35000HP 1491559 NP_874077.1 CDS HD1706 NC_002940.2 1421678 1422262 R hypothetical protein complement(1421678..1422262) Haemophilus ducreyi 35000HP 1491560 NP_874078.1 CDS gltS NC_002940.2 1422527 1423747 D sodium/glutamate symporter 1422527..1423747 Haemophilus ducreyi 35000HP 1491561 NP_874079.1 CDS HD1708 NC_002940.2 1423816 1424193 R hypothetical protein complement(1423816..1424193) Haemophilus ducreyi 35000HP 1491562 NP_874080.1 CDS glnE NC_002940.2 1424289 1427162 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(1424289..1427162) Haemophilus ducreyi 35000HP 1491563 NP_874081.1 CDS HD1710 NC_002940.2 1427224 1427505 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein complement(1427224..1427505) Haemophilus ducreyi 35000HP 1491564 NP_874082.1 CDS HD1711 NC_002940.2 1427542 1428012 R acyl CoA thioester hydrolase complement(1427542..1428012) Haemophilus ducreyi 35000HP 1491565 NP_874083.1 CDS ispZ NC_002940.2 1427999 1428550 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1427999..1428550) Haemophilus ducreyi 35000HP 1491566 NP_874084.1 CDS HD1713 NC_002940.2 1428552 1429298 R hypothetical protein complement(1428552..1429298) Haemophilus ducreyi 35000HP 1491567 NP_874085.1 CDS HD1714 NC_002940.2 1429353 1429454 D hypothetical protein 1429353..1429454 Haemophilus ducreyi 35000HP 1491568 NP_874086.1 CDS HD1715 NC_002940.2 1429435 1429881 D hypothetical protein 1429435..1429881 Haemophilus ducreyi 35000HP 1491569 NP_874087.1 CDS HD1716 NC_002940.2 1429947 1430978 D ATPase 1429947..1430978 Haemophilus ducreyi 35000HP 1491570 NP_874088.1 CDS HD1717 NC_002940.2 1431168 1432544 D transporter 1431168..1432544 Haemophilus ducreyi 35000HP 1491571 NP_874089.1 CDS xthA NC_002940.2 1432567 1433370 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1432567..1433370 Haemophilus ducreyi 35000HP 1491572 NP_874090.1 CDS lbgB NC_002940.2 1433385 1434416 R lipooligosaccharide D-glycero-D-manno-heptosyltransferase complement(1433385..1434416) Haemophilus ducreyi 35000HP 1491573 NP_874091.1 CDS lbgA NC_002940.2 1434417 1435091 R lipooligosaccharide galactosyltransferase I complement(1434417..1435091) Haemophilus ducreyi 35000HP 1491574 NP_874092.1 CDS rpmE NC_002940.2 1435177 1435389 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1435177..1435389) Haemophilus ducreyi 35000HP 1491575 NP_874093.1 CDS tktA NC_002940.2 1435764 1437761 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1435764..1437761 Haemophilus ducreyi 35000HP 1491576 NP_874094.1 CDS fadR NC_002940.2 1438895 1439641 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(1438895..1439641) Haemophilus ducreyi 35000HP 1491578 NP_874095.1 CDS nhaB NC_002940.2 1439798 1441339 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1439798..1441339 Haemophilus ducreyi 35000HP 1491579 NP_874096.1 CDS dsbB NC_002940.2 1441450 1441989 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1441450..1441989 Haemophilus ducreyi 35000HP 1491580 NP_874097.1 CDS HD1730 NC_002940.2 1442082 1442174 R hypothetical protein complement(1442082..1442174) Haemophilus ducreyi 35000HP 1491581 NP_874098.1 CDS nrdA NC_002940.2 1442319 1444589 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1442319..1444589 Haemophilus ducreyi 35000HP 1491582 NP_874099.1 CDS nrdB NC_002940.2 1444741 1445871 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 1444741..1445871 Haemophilus ducreyi 35000HP 1491583 NP_874100.1 CDS HD1733 NC_002940.2 1445868 1445966 R hypothetical protein complement(1445868..1445966) Haemophilus ducreyi 35000HP 1491584 NP_874101.1 CDS mrp NC_002940.2 1445972 1447069 R ATPase complement(1445972..1447069) Haemophilus ducreyi 35000HP 1491585 NP_874102.1 CDS HD1735 NC_002940.2 1447073 1448596 R oligopeptide transporter periplasmic-binding protein complement(1447073..1448596) Haemophilus ducreyi 35000HP 1491586 NP_874103.1 CDS HD1736 NC_002940.2 1448606 1449253 R hypothetical protein complement(1448606..1449253) Haemophilus ducreyi 35000HP 1491587 NP_874104.1 CDS ppiD NC_002940.2 1449373 1451235 R peptidyl-prolyl cis-trans isomerase D complement(1449373..1451235) Haemophilus ducreyi 35000HP 1491588 NP_874105.1 CDS rpsO NC_002940.2 1451444 1451713 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1451444..1451713 Haemophilus ducreyi 35000HP 1491589 NP_874106.1 CDS HD1739 NC_002940.2 1451740 1451853 D hypothetical protein 1451740..1451853 Haemophilus ducreyi 35000HP 1491590 NP_874107.1 CDS hemY NC_002940.2 1451828 1453069 R HemY protein complement(1451828..1453069) Haemophilus ducreyi 35000HP 1491591 NP_874108.1 CDS hemX NC_002940.2 1453079 1454473 R uroporphyrinogen III C-methyltransferase complement(1453079..1454473) Haemophilus ducreyi 35000HP 1491592 NP_874109.1 CDS hemD NC_002940.2 1454483 1455238 R uroporphyrinogen III synthase complement(1454483..1455238) Haemophilus ducreyi 35000HP 1491593 NP_874110.1 CDS HD1744 NC_002940.2 1455538 1456302 R hypothetical protein complement(1455538..1456302) Haemophilus ducreyi 35000HP 1491594 NP_874111.1 CDS uup NC_002940.2 1456343 1458280 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase complement(1456343..1458280) Haemophilus ducreyi 35000HP 1491595 NP_874112.1 CDS HD1746 NC_002940.2 1458274 1458366 D hypothetical protein 1458274..1458366 Haemophilus ducreyi 35000HP 1491596 NP_874113.1 CDS HD1747 NC_002940.2 1458363 1458476 R hypothetical protein complement(1458363..1458476) Haemophilus ducreyi 35000HP 1491597 NP_874114.1 CDS gyrA NC_002940.2 1458547 1461249 R DNA gyrase subunit A complement(1458547..1461249) Haemophilus ducreyi 35000HP 1491598 NP_874115.1 CDS HD1749 NC_002940.2 1461363 1461743 R hypothetical protein complement(1461363..1461743) Haemophilus ducreyi 35000HP 1491599 NP_874116.1 CDS ubiG NC_002940.2 1461807 1462517 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1461807..1462517 Haemophilus ducreyi 35000HP 1491600 NP_874117.1 CDS yajC NC_002940.2 1462631 1462927 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1462631..1462927 Haemophilus ducreyi 35000HP 1491601 NP_874118.1 CDS secD NC_002940.2 1462952 1464796 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1462952..1464796 Haemophilus ducreyi 35000HP 1491602 NP_874119.1 CDS secF NC_002940.2 1464807 1465781 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1464807..1465781 Haemophilus ducreyi 35000HP 1491603 NP_874120.1 CDS ftnA NC_002940.2 1465934 1466440 D ferritin 1465934..1466440 Haemophilus ducreyi 35000HP 1491604 NP_874121.1 CDS ftnB NC_002940.2 1466440 1466928 D ferritin 1466440..1466928 Haemophilus ducreyi 35000HP 1491605 NP_874122.1 CDS HD1756 NC_002940.2 1467091 1468392 D xanthine/uracil permease 1467091..1468392 Haemophilus ducreyi 35000HP 1491606 NP_874123.1 CDS ruvB NC_002940.2 1468473 1469477 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1468473..1469477) Haemophilus ducreyi 35000HP 1491607 NP_874124.1 CDS ruvA NC_002940.2 1469533 1470138 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1469533..1470138) Haemophilus ducreyi 35000HP 1491608 NP_874125.1 CDS pyrE NC_002940.2 1470299 1470940 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1470299..1470940) Haemophilus ducreyi 35000HP 1491609 NP_874126.1 CDS HD1760 NC_002940.2 1471043 1471885 R hypothetical protein complement(1471043..1471885) Haemophilus ducreyi 35000HP 1491610 NP_874127.1 CDS ampD NC_002940.2 1471965 1472516 D N-acetyl-anhydromuranmyl-L-alanine amidase 1471965..1472516 Haemophilus ducreyi 35000HP 1491611 NP_874128.1 CDS rluA NC_002940.2 1472701 1473369 R ribosomal large subunit pseudouridine synthase A; pseudouridylate synthase complement(1472701..1473369) Haemophilus ducreyi 35000HP 1491612 NP_874129.1 CDS hepA NC_002940.2 1473426 1476347 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(1473426..1476347) Haemophilus ducreyi 35000HP 1491613 NP_874130.1 CDS rumA NC_002940.2 1476563 1477891 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1476563..1477891 Haemophilus ducreyi 35000HP 1491614 NP_874131.1 CDS moeB NC_002940.2 1478188 1478937 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(1478188..1478937) Haemophilus ducreyi 35000HP 1491615 NP_874132.1 CDS moeA NC_002940.2 1478937 1480166 R molybdopterin biosynthesis protein MoeA complement(1478937..1480166) Haemophilus ducreyi 35000HP 1491616 NP_874133.1 CDS HD1768 NC_002940.2 1480305 1482221 D ABC transporter ATP-binding protein 1480305..1482221 Haemophilus ducreyi 35000HP 1491617 NP_874134.1 CDS HD1769 NC_002940.2 1482288 1483313 R hypothetical protein complement(1482288..1483313) Haemophilus ducreyi 35000HP 1491618 NP_874135.1 CDS HD1770 NC_002940.2 1483291 1484268 R nitrogen regulator protein complement(1483291..1484268) Haemophilus ducreyi 35000HP 1491619 NP_874136.1 CDS djlA NC_002940.2 1484372 1485232 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(1484372..1485232) Haemophilus ducreyi 35000HP 1491620 NP_874137.1 CDS pal NC_002940.2 1485449 1485922 R 18K peptidoglycan-associated outer membrane lipoprotein complement(1485449..1485922) Haemophilus ducreyi 35000HP 1491621 NP_874138.1 CDS tolB NC_002940.2 1485947 1487227 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(1485947..1487227) Haemophilus ducreyi 35000HP 1491622 NP_874139.1 CDS tolR NC_002940.2 1488372 1488812 R membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR complement(1488372..1488812) Haemophilus ducreyi 35000HP 1491624 NP_874140.1 CDS tolQ NC_002940.2 1488881 1489561 R colicin transport protein, TolQ complement(1488881..1489561) Haemophilus ducreyi 35000HP 1491625 NP_874141.1 CDS HD1778 NC_002940.2 1489594 1489983 R hypothetical protein complement(1489594..1489983) Haemophilus ducreyi 35000HP 1491626 NP_874142.1 CDS HD1779 NC_002940.2 1490119 1490409 R hypothetical protein complement(1490119..1490409) Haemophilus ducreyi 35000HP 1491627 NP_874143.1 CDS HD1780 NC_002940.2 1490421 1490519 R hypothetical protein complement(1490421..1490519) Haemophilus ducreyi 35000HP 1491628 NP_874144.1 CDS cydB NC_002940.2 1490532 1491668 R cytochrome D ubiquinol oxidase subunit II complement(1490532..1491668) Haemophilus ducreyi 35000HP 1491629 NP_874145.1 CDS cydA NC_002940.2 1491681 1493231 R cytochrome D ubiquinol oxidase, subunit I complement(1491681..1493231) Haemophilus ducreyi 35000HP 1491630 NP_874146.1 CDS HD1783 NC_002940.2 1493687 1494022 D hypothetical protein 1493687..1494022 Haemophilus ducreyi 35000HP 1491631 NP_874147.1 CDS groEL NC_002940.2 1494165 1495808 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(1494165..1495808) Haemophilus ducreyi 35000HP 1491632 NP_874148.1 CDS groES NC_002940.2 1495831 1496121 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1495831..1496121) Haemophilus ducreyi 35000HP 1491633 NP_874149.1 CDS mutT NC_002940.2 1496301 1496699 R mutator MutT protein; 7,8-dihydro-8-oxoguanine-triphosphatase complement(1496301..1496699) Haemophilus ducreyi 35000HP 1491634 NP_874150.1 CDS secA NC_002940.2 1496879 1499596 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(1496879..1499596) Haemophilus ducreyi 35000HP 1491635 NP_874151.1 CDS HD1789 NC_002940.2 1499683 1500003 R hypothetical protein complement(1499683..1500003) Haemophilus ducreyi 35000HP 1491636 NP_874152.1 CDS HD1790 NC_002940.2 1500116 1500427 D hypothetical protein 1500116..1500427 Haemophilus ducreyi 35000HP 1491637 NP_874153.1 CDS bolA NC_002940.2 1500715 1501026 R transcriptional regulator, BolA complement(1500715..1501026) Haemophilus ducreyi 35000HP 1491639 NP_874154.1 CDS HD1792 NC_002940.2 1501153 1501743 D lipoprotein 1501153..1501743 Haemophilus ducreyi 35000HP 1491640 NP_874155.1 CDS HD1793 NC_002940.2 1501870 1502601 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1501870..1502601 Haemophilus ducreyi 35000HP 1491641 NP_874156.1 CDS HD1794 NC_002940.2 1502603 1503163 D hypothetical protein 1502603..1503163 Haemophilus ducreyi 35000HP 1491642 NP_874157.1 CDS HD1795 NC_002940.2 1503175 1503591 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1503175..1503591 Haemophilus ducreyi 35000HP 1491643 NP_874158.1 CDS HD1796 NC_002940.2 1503575 1503721 D hypothetical protein 1503575..1503721 Haemophilus ducreyi 35000HP 1491644 NP_874159.1 CDS HD1797 NC_002940.2 1503780 1505069 D hypothetical protein 1503780..1505069 Haemophilus ducreyi 35000HP 1491645 NP_874160.1 CDS HD1798 NC_002940.2 1505158 1505436 R hypothetical protein complement(1505158..1505436) Haemophilus ducreyi 35000HP 1491646 NP_874161.1 CDS rplT NC_002940.2 1505572 1505925 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1505572..1505925) Haemophilus ducreyi 35000HP 1491647 NP_874162.1 CDS rpmI NC_002940.2 1506002 1506199 R 50S ribosomal protein L35 complement(1506002..1506199) Haemophilus ducreyi 35000HP 1491648 NP_874163.1 CDS infC NC_002940.2 1506442 1507020 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1506442..1507020) Haemophilus ducreyi 35000HP 1491649 NP_874164.1 CDS thrS NC_002940.2 1507243 1509174 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(1507243..1509174) Haemophilus ducreyi 35000HP 1491650 NP_874165.1 CDS ppnK NC_002940.2 1509444 1510343 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1509444..1510343 Haemophilus ducreyi 35000HP 1491651 NP_874166.1 CDS HD1805 NC_002940.2 1510375 1510968 R MAF protein complement(1510375..1510968) Haemophilus ducreyi 35000HP 1491652 NP_874167.1 CDS thiI NC_002940.2 1511041 1512495 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1511041..1512495) Haemophilus ducreyi 35000HP 1491653 NP_874168.1 CDS purA NC_002940.2 1512620 1513918 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(1512620..1513918) Haemophilus ducreyi 35000HP 1491654 NP_874169.1 CDS hflC NC_002940.2 1514054 1514941 R HflC protein complement(1514054..1514941) Haemophilus ducreyi 35000HP 1491655 NP_874170.1 CDS hflK NC_002940.2 1514944 1516149 R HflK protein complement(1514944..1516149) Haemophilus ducreyi 35000HP 1491656 NP_874171.1 CDS trxA NC_002940.2 1516348 1516665 R thioredoxin complement(1516348..1516665) Haemophilus ducreyi 35000HP 1491657 NP_874172.1 CDS HD1811 NC_002940.2 1516764 1518056 R xanthine permease complement(1516764..1518056) Haemophilus ducreyi 35000HP 1491658 NP_874173.1 CDS uvrC NC_002940.2 1518134 1519972 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1518134..1519972) Haemophilus ducreyi 35000HP 1491659 NP_874174.1 CDS pgsA NC_002940.2 1520059 1520613 R phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1520059..1520613) Haemophilus ducreyi 35000HP 1491660 NP_874175.1 CDS HD1814 NC_002940.2 1520796 1521461 D transporter 1520796..1521461 Haemophilus ducreyi 35000HP 1491661 NP_874176.1 CDS HD1815 NC_002940.2 1521523 1521858 D sulfite reductase 1521523..1521858 Haemophilus ducreyi 35000HP 1491662 NP_874177.1 CDS yfeA NC_002940.2 1521929 1522834 D iron ABC transporter substrate-binding proten 1521929..1522834 Haemophilus ducreyi 35000HP 1491663 NP_874178.1 CDS yfeB NC_002940.2 1522831 1523589 D iron (chelated) transporter ATP-binding protein 1522831..1523589 Haemophilus ducreyi 35000HP 1491664 NP_874179.1 CDS apt NC_002940.2 1523795 1524334 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1523795..1524334 Haemophilus ducreyi 35000HP 1491665 NP_874180.1 CDS dnaX NC_002940.2 1524362 1526425 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1524362..1526425 Haemophilus ducreyi 35000HP 1491666 NP_874181.1 CDS HD1820 NC_002940.2 1526425 1527345 D ABC transporter ATP-binding protein 1526425..1527345 Haemophilus ducreyi 35000HP 1491667 NP_874182.1 CDS HD1821 NC_002940.2 1527348 1528109 D ABC transporter 1527348..1528109 Haemophilus ducreyi 35000HP 1491668 NP_874183.1 CDS modA NC_002940.2 1528188 1528946 D molybdate-binding periplasmic protein, ABC transporter 1528188..1528946 Haemophilus ducreyi 35000HP 1491669 NP_874184.1 CDS modB NC_002940.2 1529022 1529714 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 1529022..1529714 Haemophilus ducreyi 35000HP 1491670 NP_874185.1 CDS HD1825 NC_002940.2 1529639 1529740 D hypothetical protein 1529639..1529740 Haemophilus ducreyi 35000HP 1491671 NP_874186.1 CDS modC NC_002940.2 1529733 1530788 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 1529733..1530788 Haemophilus ducreyi 35000HP 1491672 NP_874187.1 CDS HD1827 NC_002940.2 1530836 1531270 D hypothetical protein 1530836..1531270 Haemophilus ducreyi 35000HP 1491673 NP_874188.1 CDS HD1828 NC_002940.2 1531260 1531562 D hypothetical protein 1531260..1531562 Haemophilus ducreyi 35000HP 1491674 NP_874189.1 CDS HD1829 NC_002940.2 1531604 1533010 R outer membrane protein complement(1531604..1533010) Haemophilus ducreyi 35000HP 1491675 NP_874190.1 CDS gmk NC_002940.2 1533123 1533743 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1533123..1533743) Haemophilus ducreyi 35000HP 1491676 NP_874191.1 CDS gpt NC_002940.2 1533812 1534285 R catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase complement(1533812..1534285) Haemophilus ducreyi 35000HP 1491677 NP_874192.1 CDS pepD NC_002940.2 1534457 1535905 D aminoacyl-histidine dipeptidase 1534457..1535905 Haemophilus ducreyi 35000HP 1491678 NP_874193.1 CDS wecG NC_002940.2 1541896 1542618 R UDP-N-acetyl-D-mannosaminuronic acid transferase complement(1541896..1542618) Haemophilus ducreyi 35000HP 1491687 NP_874194.1 CDS HD1835 NC_002940.2 1542620 1543924 R enterobacterial common antigen polymerase; common antigen polymerase complement(1542620..1543924) Haemophilus ducreyi 35000HP 1491688 NP_874195.1 CDS wecF NC_002940.2 1543921 1545018 R catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase complement(1543921..1545018) Haemophilus ducreyi 35000HP 1491689 NP_874196.1 CDS wecE NC_002940.2 1546298 1547428 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(1546298..1547428) Haemophilus ducreyi 35000HP 1491691 NP_874197.1 CDS wecD NC_002940.2 1547415 1548089 R TDP-fucosamine acetyltransferase complement(1547415..1548089) Haemophilus ducreyi 35000HP 1491692 NP_874198.1 CDS wecC NC_002940.2 1548092 1549369 R catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase complement(1548092..1549369) Haemophilus ducreyi 35000HP 1491693 NP_874199.1 CDS wecB NC_002940.2 1549432 1550511 R UDP-N-acetylglucosamine 2-epimerase complement(1549432..1550511) Haemophilus ducreyi 35000HP 1491694 NP_874200.1 CDS wecA NC_002940.2 1550592 1551749 R undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase complement(1550592..1551749) Haemophilus ducreyi 35000HP 1491695 NP_874201.1 CDS nagA NC_002940.2 1551850 1552995 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(1551850..1552995) Haemophilus ducreyi 35000HP 1491696 NP_874202.1 CDS nagB NC_002940.2 1553043 1553846 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(1553043..1553846) Haemophilus ducreyi 35000HP 1491697 NP_874203.1 CDS nanA NC_002940.2 1554010 1554819 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(1554010..1554819) Haemophilus ducreyi 35000HP 1491698 NP_874204.1 CDS nanE NC_002940.2 1555079 1555768 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1555079..1555768) Haemophilus ducreyi 35000HP 1491699 NP_874205.1 CDS menD NC_002940.2 1556101 1557810 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1556101..1557810 Haemophilus ducreyi 35000HP 1491700 NP_874206.1 CDS HD1854 NC_002940.2 1557810 1558595 D catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase 1557810..1558595 Haemophilus ducreyi 35000HP 1491701 NP_874207.1 CDS HD1856 NC_002940.2 1558660 1559625 R hypothetical protein complement(1558660..1559625) Haemophilus ducreyi 35000HP 1491702 NP_874208.1 CDS ulaD NC_002940.2 1559836 1560516 R catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase complement(1559836..1560516) Haemophilus ducreyi 35000HP 1491703 NP_874209.1 CDS HD1859 NC_002940.2 1560657 1561124 R PTS system enzyme II-A permease complement(1560657..1561124) Haemophilus ducreyi 35000HP 1491704 NP_874210.1 CDS ulaA NC_002940.2 1561193 1563010 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunits IICB complement(1561193..1563010) Haemophilus ducreyi 35000HP 1491705 NP_874211.1 CDS HD1861 NC_002940.2 1563470 1564561 D L-ascorbate 6-phosphate lactonase 1563470..1564561 Haemophilus ducreyi 35000HP 1491706 NP_874212.1 CDS HD1863 NC_002940.2 1564660 1565406 D negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 1564660..1565406 Haemophilus ducreyi 35000HP 1491707 NP_874213.1 CDS sgbU NC_002940.2 1565498 1566358 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 1565498..1566358 Haemophilus ducreyi 35000HP 1491708 NP_874214.1 CDS araD NC_002940.2 1566352 1567065 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 1566352..1567065 Haemophilus ducreyi 35000HP 1491709 NP_874215.1 CDS HD1869 NC_002940.2 1567393 1567491 R hypothetical protein complement(1567393..1567491) Haemophilus ducreyi 35000HP 1491711 NP_874216.1 CDS ubiF NC_002940.2 1569291 1570496 D 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1569291..1570496 Haemophilus ducreyi 35000HP 1491713 NP_874217.1 CDS tryP NC_002940.2 1570582 1571808 R tyrosine-specific transport protein; tyrosine permease complement(1570582..1571808) Haemophilus ducreyi 35000HP 1491714 NP_874218.1 CDS rpoC NC_002940.2 1572052 1576314 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1572052..1576314) Haemophilus ducreyi 35000HP 1491715 NP_874219.1 CDS rpoB NC_002940.2 1576480 1580508 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1576480..1580508) Haemophilus ducreyi 35000HP 1491716 NP_874220.1 CDS HD1878 NC_002940.2 1580540 1580695 D hypothetical protein 1580540..1580695 Haemophilus ducreyi 35000HP 1491717 NP_874221.1 CDS rplL NC_002940.2 1580958 1581320 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1580958..1581320) Haemophilus ducreyi 35000HP 1491718 NP_874222.1 CDS rplJ NC_002940.2 1581381 1581872 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1581381..1581872) Haemophilus ducreyi 35000HP 1491719 NP_874223.1 CDS rplA NC_002940.2 1582146 1582835 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1582146..1582835) Haemophilus ducreyi 35000HP 1491720 NP_874224.1 CDS rplK NC_002940.2 1582840 1583268 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1582840..1583268) Haemophilus ducreyi 35000HP 1491721 NP_874225.1 CDS nusG NC_002940.2 1583456 1584019 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(1583456..1584019) Haemophilus ducreyi 35000HP 1491722 NP_874226.1 CDS secE NC_002940.2 1584021 1584437 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(1584021..1584437) Haemophilus ducreyi 35000HP 1491723 NP_874227.1 CDS HD1887 NC_002940.2 1584727 1586736 D oligopeptide transporter 1584727..1586736 Haemophilus ducreyi 35000HP 1491724 NP_874228.1 CDS smf NC_002940.2 1586846 1587988 R smf protein; DNA processing chain A complement(1586846..1587988) Haemophilus ducreyi 35000HP 1491725 NP_874229.1 CDS def NC_002940.2 1588178 1588693 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1588178..1588693 Haemophilus ducreyi 35000HP 1491726 NP_874230.1 CDS rfaD NC_002940.2 1588825 1589766 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 1588825..1589766 Haemophilus ducreyi 35000HP 1491727 NP_874231.1 CDS HD1891 NC_002940.2 1589862 1590194 R drug resistance protein complement(1589862..1590194) Haemophilus ducreyi 35000HP 1491728 NP_874232.1 CDS HD1892 NC_002940.2 1590650 1591066 R hypothetical protein complement(1590650..1591066) Haemophilus ducreyi 35000HP 1491729 NP_874233.1 CDS HD1893 NC_002940.2 1591072 1591368 R hypothetical protein complement(1591072..1591368) Haemophilus ducreyi 35000HP 1491730 NP_874234.1 CDS glmS NC_002940.2 1591723 1593555 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1591723..1593555) Haemophilus ducreyi 35000HP 1491731 NP_874235.1 CDS HD1895 NC_002940.2 1593664 1595628 R adhesin processing HmwC-like protein complement(1593664..1595628) Haemophilus ducreyi 35000HP 1491732 NP_874236.1 CDS rimO NC_002940.2 1595656 1596987 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(1595656..1596987) Haemophilus ducreyi 35000HP 1491733 NP_874237.1 CDS HD1897 NC_002940.2 1597024 1597134 R hypothetical protein complement(1597024..1597134) Haemophilus ducreyi 35000HP 1491734 NP_874238.1 CDS mtn NC_002940.2 1597170 1597868 R Includes: 5'-methylthioadenosine nucleosidase; S-adenosylhomocysteine nucleosidase; MTA/SAH nucleosidase complement(1597170..1597868) Haemophilus ducreyi 35000HP 1491735 NP_874239.1 CDS slyX NC_002940.2 1597988 1598209 R hypothetical protein complement(1597988..1598209) Haemophilus ducreyi 35000HP 1491736 NP_874240.1 CDS fkpA NC_002940.2 1598298 1599032 D FKBP-type peptidylprolyl isomerase 1598298..1599032 Haemophilus ducreyi 35000HP 1491737 NP_874241.1 CDS HD1901 NC_002940.2 1599143 1599805 D hypothetical protein 1599143..1599805 Haemophilus ducreyi 35000HP 1491738 NP_874242.1 CDS HD1902 NC_002940.2 1599805 1600182 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 1599805..1600182 Haemophilus ducreyi 35000HP 1491739 NP_874243.1 CDS HD1903 NC_002940.2 1600185 1600556 D hypothetical protein 1600185..1600556 Haemophilus ducreyi 35000HP 1491740 NP_874244.1 CDS HD1904 NC_002940.2 1600577 1600843 D hypothetical protein 1600577..1600843 Haemophilus ducreyi 35000HP 1491741 NP_874245.1 CDS murI NC_002940.2 1606459 1607256 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1606459..1607256) Haemophilus ducreyi 35000HP 1491747 NP_874246.1 CDS asnC NC_002940.2 1608322 1608765 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(1608322..1608765) Haemophilus ducreyi 35000HP 1491749 NP_874247.1 CDS HD1912 NC_002940.2 1608766 1608885 D hypothetical protein 1608766..1608885 Haemophilus ducreyi 35000HP 1491750 NP_874248.1 CDS asnA NC_002940.2 1608977 1609969 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1608977..1609969 Haemophilus ducreyi 35000HP 1491751 NP_874249.1 CDS HD1915 NC_002940.2 1610073 1610666 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ complement(1610073..1610666) Haemophilus ducreyi 35000HP 1491752 NP_874250.1 CDS HD1916 NC_002940.2 1610666 1611622 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(1610666..1611622) Haemophilus ducreyi 35000HP 1491753 NP_874251.1 CDS HD1917 NC_002940.2 1611711 1612295 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1611711..1612295 Haemophilus ducreyi 35000HP 1491754 NP_874252.1 CDS HD1918 NC_002940.2 1612295 1612489 D hypothetical protein 1612295..1612489 Haemophilus ducreyi 35000HP 1491755 NP_874253.1 CDS proS NC_002940.2 1612594 1614309 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1612594..1614309) Haemophilus ducreyi 35000HP 1491756 NP_874254.1 CDS HD1920 NC_002940.2 1614444 1615334 R hypothetical protein complement(1614444..1615334) Haemophilus ducreyi 35000HP 1491757 NP_874255.1 CDS recG NC_002940.2 1615543 1617636 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1615543..1617636 Haemophilus ducreyi 35000HP 1491758 NP_874256.1 CDS rpoZ NC_002940.2 1617755 1618060 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1617755..1618060 Haemophilus ducreyi 35000HP 1491759 NP_874257.1 CDS spoT NC_002940.2 1618164 1619870 D ppGpp pyrophosphohydrolase; guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase 1618164..1619870 Haemophilus ducreyi 35000HP 1491760 NP_874258.1 CDS menB NC_002940.2 1619989 1620846 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1619989..1620846 Haemophilus ducreyi 35000HP 1491761 NP_874259.1 CDS rpmJ NC_002940.2 1621015 1621140 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(1621015..1621140) Haemophilus ducreyi 35000HP 1491762 NP_874260.1 CDS rpmE2 NC_002940.2 1621152 1621421 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1621152..1621421) Haemophilus ducreyi 35000HP 1491763 NP_874261.1 CDS rpe NC_002940.2 1621675 1622349 D pentose-5-phosphate 3- epimerase; D-ribulose-phosphate-3 epimerase 1621675..1622349 Haemophilus ducreyi 35000HP 1491764 NP_874262.1 CDS HD1930 NC_002940.2 1622508 1622600 R hypothetical protein complement(1622508..1622600) Haemophilus ducreyi 35000HP 1491765 NP_874263.1 CDS acpP NC_002940.2 1622630 1622863 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1622630..1622863 Haemophilus ducreyi 35000HP 1491766 NP_874264.1 CDS HD1932 NC_002940.2 1623259 1624293 D hypothetical protein 1623259..1624293 Haemophilus ducreyi 35000HP 1491768 NP_874265.1 CDS tmk NC_002940.2 1624280 1624924 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1624280..1624924 Haemophilus ducreyi 35000HP 1491769 NP_874266.1 CDS holB NC_002940.2 1624937 1625923 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1624937..1625923 Haemophilus ducreyi 35000HP 1491770 NP_874267.1 CDS HD1936 NC_002940.2 1625962 1626750 D deoxyribonuclease 1625962..1626750 Haemophilus ducreyi 35000HP 1491771 NP_874268.1 CDS HD1937 NC_002940.2 1626806 1627345 D hypothetical protein 1626806..1627345 Haemophilus ducreyi 35000HP 1491772 NP_874269.1 CDS lpxH NC_002940.2 1627415 1628119 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 1627415..1628119 Haemophilus ducreyi 35000HP 1491773 NP_874270.1 CDS HD1939 NC_002940.2 1628278 1628670 D hypothetical protein 1628278..1628670 Haemophilus ducreyi 35000HP 1491774 NP_874271.1 CDS xerC NC_002940.2 1628667 1629581 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1628667..1629581) Haemophilus ducreyi 35000HP 1491775 NP_874272.1 CDS HD1941 NC_002940.2 1629599 1629904 R hypothetical protein complement(1629599..1629904) Haemophilus ducreyi 35000HP 1491776 NP_874273.1 CDS glyS NC_002940.2 1629987 1632053 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(1629987..1632053) Haemophilus ducreyi 35000HP 1491777 NP_874274.1 CDS glyQ NC_002940.2 1632093 1633001 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1632093..1633001) Haemophilus ducreyi 35000HP 1491778 NP_874275.1 CDS HD1944 NC_002940.2 1633070 1633162 D hypothetical protein 1633070..1633162 Haemophilus ducreyi 35000HP 1491779 NP_874276.1 CDS HD1945 NC_002940.2 1633184 1634392 D hypothetical protein 1633184..1634392 Haemophilus ducreyi 35000HP 1491780 NP_874277.1 CDS rplS NC_002940.2 1634484 1634834 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1634484..1634834) Haemophilus ducreyi 35000HP 1491781 NP_874278.1 CDS trmD NC_002940.2 1634859 1635614 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1634859..1635614) Haemophilus ducreyi 35000HP 1491782 NP_874279.1 CDS rimM NC_002940.2 1635672 1636199 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1635672..1636199) Haemophilus ducreyi 35000HP 1491783 NP_874280.1 CDS rpsP NC_002940.2 1636232 1636480 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1636232..1636480) Haemophilus ducreyi 35000HP 1491784 NP_874281.1 CDS rplQ NC_002940.2 1636724 1637107 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1636724..1637107) Haemophilus ducreyi 35000HP 1491785 NP_874282.1 CDS rpoA NC_002940.2 1637144 1638133 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1637144..1638133) Haemophilus ducreyi 35000HP 1491786 NP_874283.1 CDS rpsD NC_002940.2 1638199 1638825 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1638199..1638825) Haemophilus ducreyi 35000HP 1491787 NP_874284.1 CDS rpsK NC_002940.2 1638854 1639243 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1638854..1639243) Haemophilus ducreyi 35000HP 1491788 NP_874285.1 CDS rpsM NC_002940.2 1639260 1639616 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1639260..1639616) Haemophilus ducreyi 35000HP 1491789 NP_874286.1 CDS rpmJ NC_002940.2 1639753 1639866 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(1639753..1639866) Haemophilus ducreyi 35000HP 1491790 NP_874287.1 CDS secY NC_002940.2 1639898 1641217 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1639898..1641217) Haemophilus ducreyi 35000HP 1491791 NP_874288.1 CDS rplO NC_002940.2 1641219 1641653 R late assembly protein; 50S ribosomal protein L15 complement(1641219..1641653) Haemophilus ducreyi 35000HP 1491792 NP_874289.1 CDS rpmD NC_002940.2 1641658 1641837 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1641658..1641837) Haemophilus ducreyi 35000HP 1491793 NP_874290.1 CDS rpsE NC_002940.2 1641844 1642344 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1641844..1642344) Haemophilus ducreyi 35000HP 1491794 NP_874291.1 CDS rplR NC_002940.2 1642359 1642712 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1642359..1642712) Haemophilus ducreyi 35000HP 1491795 NP_874292.1 CDS rplF NC_002940.2 1642727 1643260 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1642727..1643260) Haemophilus ducreyi 35000HP 1491796 NP_874293.1 CDS rpsH NC_002940.2 1643276 1643668 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1643276..1643668) Haemophilus ducreyi 35000HP 1491797 NP_874294.1 CDS rpsN NC_002940.2 1643700 1644005 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(1643700..1644005) Haemophilus ducreyi 35000HP 1491798 NP_874295.1 CDS rplE NC_002940.2 1644017 1644556 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1644017..1644556) Haemophilus ducreyi 35000HP 1491799 NP_874296.1 CDS rplX NC_002940.2 1644574 1644885 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1644574..1644885) Haemophilus ducreyi 35000HP 1491800 NP_874297.1 CDS rplN NC_002940.2 1644896 1645267 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1644896..1645267) Haemophilus ducreyi 35000HP 1491801 NP_874298.1 CDS InsB NC_002940.2 1645368 1645871 R insertion element IS1 1/5/6 protein InsB complement(1645368..1645871) Haemophilus ducreyi 35000HP 1491802 NP_874299.1 CDS InsA NC_002940.2 1645790 1646065 R insertion element IS1 1/2/3/5/6 protein InsA complement(1645790..1646065) Haemophilus ducreyi 35000HP 1491803 NP_874300.1 CDS HD1972 NC_002940.2 1645995 1646105 D hypothetical protein 1645995..1646105 Haemophilus ducreyi 35000HP 1491804 NP_874301.1 CDS HD1973 NC_002940.2 1646107 1646211 D hypothetical protein 1646107..1646211 Haemophilus ducreyi 35000HP 1491805 NP_874302.1 CDS rpsQ NC_002940.2 1646282 1646536 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1646282..1646536) Haemophilus ducreyi 35000HP 1491806 NP_874303.1 CDS rpmC NC_002940.2 1646536 1646727 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1646536..1646727) Haemophilus ducreyi 35000HP 1491807 NP_874304.1 CDS rplP NC_002940.2 1646727 1647137 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1646727..1647137) Haemophilus ducreyi 35000HP 1491808 NP_874305.1 CDS rpsC NC_002940.2 1647151 1647855 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1647151..1647855) Haemophilus ducreyi 35000HP 1491809 NP_874306.1 CDS rplV NC_002940.2 1647873 1648205 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1647873..1648205) Haemophilus ducreyi 35000HP 1491810 NP_874307.1 CDS rpsS NC_002940.2 1648218 1648493 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1648218..1648493) Haemophilus ducreyi 35000HP 1491811 NP_874308.1 CDS rplB NC_002940.2 1648523 1649344 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1648523..1649344) Haemophilus ducreyi 35000HP 1491812 NP_874309.1 CDS rplW NC_002940.2 1649365 1649670 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1649365..1649670) Haemophilus ducreyi 35000HP 1491813 NP_874310.1 CDS rplD NC_002940.2 1649667 1650269 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1649667..1650269) Haemophilus ducreyi 35000HP 1491814 NP_874311.1 CDS rplC NC_002940.2 1650285 1650911 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1650285..1650911) Haemophilus ducreyi 35000HP 1491815 NP_874312.1 CDS rpsJ NC_002940.2 1650937 1651248 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1650937..1651248) Haemophilus ducreyi 35000HP 1491816 NP_874313.1 CDS HD1985 NC_002940.2 1651665 1652300 D DNA transformation protein 1651665..1652300 Haemophilus ducreyi 35000HP 1491817 NP_874314.1 CDS fumC NC_002940.2 1652441 1653835 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1652441..1653835 Haemophilus ducreyi 35000HP 1491818 NP_874315.1 CDS mviN NC_002940.2 1653949 1655475 R MviN virulence factor complement(1653949..1655475) Haemophilus ducreyi 35000HP 1491819 NP_874316.1 CDS HD1989 NC_002940.2 1655510 1655629 R hypothetical protein complement(1655510..1655629) Haemophilus ducreyi 35000HP 1491820 NP_874317.2 CDS rpsT NC_002940.2 1655878 1656141 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1655878..1656141 Haemophilus ducreyi 35000HP 1491821 NP_874318.1 CDS trkA NC_002940.2 1656198 1657574 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(1656198..1657574) Haemophilus ducreyi 35000HP 1491822 NP_874319.1 CDS sun NC_002940.2 1657574 1658881 R Fmu protein complement(1657574..1658881) Haemophilus ducreyi 35000HP 1491823 NP_874320.1 CDS selB NC_002940.2 1658931 1660799 R selenocysteine-specific elongation factor; SelB translation factor complement(1658931..1660799) Haemophilus ducreyi 35000HP 1491824 NP_874321.1 CDS selA NC_002940.2 1660796 1662178 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(1660796..1662178) Haemophilus ducreyi 35000HP 1491825 NP_874322.1 CDS HD1995 NC_002940.2 1662317 1662427 D hypothetical protein 1662317..1662427 Haemophilus ducreyi 35000HP 1491826 NP_874323.1 CDS mioC NC_002940.2 1662462 1662917 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1662462..1662917 Haemophilus ducreyi 35000HP 1491827 NP_874324.1 CDS HD1997 NC_002940.2 1662879 1662971 R hypothetical protein complement(1662879..1662971) Haemophilus ducreyi 35000HP 1491828 NP_874325.1 CDS ffh NC_002940.2 1662997 1664349 R signal recognition particle protein complement(1662997..1664349) Haemophilus ducreyi 35000HP 1491829 NP_874326.1 CDS mltC NC_002940.2 1666187 1667290 R Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C complement(1666187..1667290) Haemophilus ducreyi 35000HP 1491833 NP_874327.1 CDS HD2003 NC_002940.2 1667294 1667578 R hypothetical protein complement(1667294..1667578) Haemophilus ducreyi 35000HP 1491834 NP_874328.1 CDS mutY NC_002940.2 1667582 1668670 R A/G-specific adenine glycosylase complement(1667582..1668670) Haemophilus ducreyi 35000HP 1491835 NP_874329.1 CDS hslV NC_002940.2 1668916 1669437 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1668916..1669437 Haemophilus ducreyi 35000HP 1491836 NP_874330.1 CDS hslU NC_002940.2 1669500 1670846 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding protein HslU 1669500..1670846 Haemophilus ducreyi 35000HP 1491837 NP_874331.1 CDS HD2011 NC_002940.2 1675033 1675461 R hypothetical protein complement(1675033..1675461) Haemophilus ducreyi 35000HP 1491839 NP_874332.1 CDS lipA NC_002940.2 1675581 1676573 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1675581..1676573) Haemophilus ducreyi 35000HP 1491840 NP_874333.1 CDS lipB NC_002940.2 1676667 1677341 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1676667..1677341) Haemophilus ducreyi 35000HP 1491841 NP_874334.1 CDS HD2014 NC_002940.2 1677364 1677507 R hypothetical protein complement(1677364..1677507) Haemophilus ducreyi 35000HP 1491842 NP_874335.1 CDS HD2015 NC_002940.2 1677549 1677842 R hypothetical protein complement(1677549..1677842) Haemophilus ducreyi 35000HP 1491843 NP_874336.1 CDS dacA NC_002940.2 1677958 1679139 R penicillin-binding protein 5; D-alanyl-D-alanine carboxypeptidase fraction A complement(1677958..1679139) Haemophilus ducreyi 35000HP 1491844 NP_874337.1 CDS HD2017 NC_002940.2 1679238 1679792 R rare lipoprotein A complement(1679238..1679792) Haemophilus ducreyi 35000HP 1491845 NP_874338.1 CDS mrdB NC_002940.2 1679925 1681049 R rod-shape-determining protein RodA complement(1679925..1681049) Haemophilus ducreyi 35000HP 1491846 NP_874339.1 CDS mrdA NC_002940.2 1681042 1683003 R penicillin binding protein 2 complement(1681042..1683003) Haemophilus ducreyi 35000HP 1491847 NP_874340.1 CDS HD2022 NC_002940.2 1683020 1683487 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1683020..1683487) Haemophilus ducreyi 35000HP 1491848 NP_874341.1 CDS HD2023 NC_002940.2 1683528 1683842 R hypothetical protein complement(1683528..1683842) Haemophilus ducreyi 35000HP 1491849 NP_874342.1 CDS mutS NC_002940.2 1683966 1686566 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1683966..1686566) Haemophilus ducreyi 35000HP 1491850 NP_874343.1 CDS hgbA NC_002940.2 1686700 1689618 R hemoglobin-binding protein HgbA complement(1686700..1689618) Haemophilus ducreyi 35000HP 1491851 NP_874344.1 CDS mscL NC_002940.2 1689869 1690270 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(1689869..1690270) Haemophilus ducreyi 35000HP 1491852 NP_874345.1 CDS trkH NC_002940.2 1690379 1691839 R TRK system potassium uptake protein TrkH complement(1690379..1691839) Haemophilus ducreyi 35000HP 1491853 NP_874346.1 CDS fmt NC_002940.2 1691995 1692945 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1691995..1692945 Haemophilus ducreyi 35000HP 1491854 NP_874347.1 CDS HD2030 NC_002940.2 1692997 1695114 R hypothetical protein complement(1692997..1695114) Haemophilus ducreyi 35000HP 1491855 NP_874348.1 CDS HD2032 NC_002940.2 1695251 1696009 R amino acid ABC transporter ATP-binding protein complement(1695251..1696009) Haemophilus ducreyi 35000HP 1491856 NP_874349.1 CDS HD2033 NC_002940.2 1696043 1696759 R amino-acid ABC transporter permease protein complement(1696043..1696759) Haemophilus ducreyi 35000HP 1491857 NP_874350.1 CDS HD2034 NC_002940.2 1696821 1696922 R hypothetical protein complement(1696821..1696922) Haemophilus ducreyi 35000HP 1491858 NP_874351.1 CDS HD2035 NC_002940.2 1696897 1697679 R amino acid ABC transporter substrate-binding protein complement(1696897..1697679) Haemophilus ducreyi 35000HP 1491859 NP_874352.1 CDS HD2037 NC_002940.2 1698210 1698707 D hypothetical protein 1698210..1698707 Haemophilus ducreyi 35000HP 1491860 tRNA-Ile-1 tRNA tRNA-Ile-1 NC_002940.2 12250 12323 D tRNA-Ile 12250..12323 Haemophilus ducreyi 35000HP 1490036 tRNA-Ala-1 tRNA tRNA-Ala-1 NC_002940.2 12370 12442 D tRNA-Ala 12370..12442 Haemophilus ducreyi 35000HP 1490037 tRNA-Asp-1 tRNA tRNA-Asp-1 NC_002940.2 16180 16253 D tRNA-Asp 16180..16253 Haemophilus ducreyi 35000HP 1490041 tRNA-Trp-1 tRNA tRNA-Trp-1 NC_002940.2 16294 16366 D tRNA-Trp 16294..16366 Haemophilus ducreyi 35000HP 1490042 tRNA-Thr-1 tRNA tRNA-Thr-1 NC_002940.2 49222 49294 R tRNA-Thr complement(49222..49294) Haemophilus ducreyi 35000HP 1490079 tRNA-Tyr-1 tRNA tRNA-Tyr-1 NC_002940.2 49427 49508 R tRNA-Tyr complement(49427..49508) Haemophilus ducreyi 35000HP 1490080 tRNA-Thr-2 tRNA tRNA-Thr-2 NC_002940.2 49549 49621 R tRNA-Thr complement(49549..49621) Haemophilus ducreyi 35000HP 1490081 tRNA-Asp-2 tRNA tRNA-Asp-2 NC_002940.2 161280 161353 R tRNA-Asp complement(161280..161353) Haemophilus ducreyi 35000HP 1490228 tRNA-Ile-2 tRNA tRNA-Ile-2 NC_002940.2 241763 241836 D tRNA-Ile 241763..241836 Haemophilus ducreyi 35000HP 1490311 tRNA-Ala-2 tRNA tRNA-Ala-2 NC_002940.2 241883 241955 D tRNA-Ala 241883..241955 Haemophilus ducreyi 35000HP 1490312 tRNA-Val-1 tRNA tRNA-Val-1 NC_002940.2 254801 254873 R tRNA-Val complement(254801..254873) Haemophilus ducreyi 35000HP 1490323 tRNA-Val-2 tRNA tRNA-Val-2 NC_002940.2 254918 254990 R tRNA-Val complement(254918..254990) Haemophilus ducreyi 35000HP 1490324 tRNA-Ala-3 tRNA tRNA-Ala-3 NC_002940.2 256654 256726 D tRNA-Ala 256654..256726 Haemophilus ducreyi 35000HP 1490326 tRNA-Met-1 tRNA tRNA-Met-1 NC_002940.2 329774 329847 D tRNA-Met 329774..329847 Haemophilus ducreyi 35000HP 1490411 tRNA-Leu-1 tRNA tRNA-Leu-1 NC_002940.2 329856 329937 D tRNA-Leu 329856..329937 Haemophilus ducreyi 35000HP 1490412 tRNA-Gln-1 tRNA tRNA-Gln-1 NC_002940.2 329969 330040 D tRNA-Gln 329969..330040 Haemophilus ducreyi 35000HP 1490413 tRNA-Glu-1 tRNA tRNA-Glu-1 NC_002940.2 490936 491008 D tRNA-Glu 490936..491008 Haemophilus ducreyi 35000HP 1490597 tRNA-Ser-1 tRNA tRNA-Ser-1 NC_002940.2 570787 570873 R tRNA-Ser complement(570787..570873) Haemophilus ducreyi 35000HP 1490681 tRNA-Ile-3 tRNA tRNA-Ile-3 NC_002940.2 618348 618421 D tRNA-Ile 618348..618421 Haemophilus ducreyi 35000HP 1490738 tRNA-Ala-4 tRNA tRNA-Ala-4 NC_002940.2 618468 618540 D tRNA-Ala 618468..618540 Haemophilus ducreyi 35000HP 1490739 tRNA-Ser-2 tRNA tRNA-Ser-2 NC_002940.2 631173 631263 D tRNA-Ser 631173..631263 Haemophilus ducreyi 35000HP 1490752 tRNA-Arg-1 tRNA tRNA-Arg-1 NC_002940.2 631334 631407 D tRNA-Arg 631334..631407 Haemophilus ducreyi 35000HP 1490753 tRNA-Gly-1 tRNA tRNA-Gly-1 NC_002940.2 718956 719028 R tRNA-Gly complement(718956..719028) Haemophilus ducreyi 35000HP 1490838 tRNA-Lys-1 tRNA tRNA-Lys-1 NC_002940.2 768456 768528 R tRNA-Lys complement(768456..768528) Haemophilus ducreyi 35000HP 1490914 tRNA-Leu-2 tRNA tRNA-Leu-2 NC_002940.2 768585 768668 R tRNA-Leu complement(768585..768668) Haemophilus ducreyi 35000HP 1490915 tRNA-Gly-2 tRNA tRNA-Gly-2 NC_002940.2 768696 768768 R tRNA-Gly complement(768696..768768) Haemophilus ducreyi 35000HP 1490916 tRNA-Arg-2 tRNA tRNA-Arg-2 NC_002940.2 883031 883104 R tRNA-Arg complement(883031..883104) Haemophilus ducreyi 35000HP 1491037 tRNA-Pro-1 tRNA tRNA-Pro-1 NC_002940.2 883143 883216 R tRNA-Pro complement(883143..883216) Haemophilus ducreyi 35000HP 1491038 tRNA-Met-2 tRNA tRNA-Met-2 NC_002940.2 987830 987903 D tRNA-Met 987830..987903 Haemophilus ducreyi 35000HP 1491130 tRNA-Val-3 tRNA tRNA-Val-3 NC_002940.2 1025077 1025150 R tRNA-Val complement(1025077..1025150) Haemophilus ducreyi 35000HP 1491166 tRNA-Leu-3 tRNA tRNA-Leu-3 NC_002940.2 1040559 1040641 D tRNA-Leu 1040559..1040641 Haemophilus ducreyi 35000HP 1491179 tRNA-Met-3 tRNA tRNA-Met-3 NC_002940.2 1200748 1200821 R tRNA-Met complement(1200748..1200821) Haemophilus ducreyi 35000HP 1491348 tRNA-Cys-1 tRNA tRNA-Cys-1 NC_002940.2 1340263 1340333 R tRNA-Cys complement(1340263..1340333) Haemophilus ducreyi 35000HP 1491485 tRNA-Gly-3 tRNA tRNA-Gly-3 NC_002940.2 1340344 1340416 R tRNA-Gly complement(1340344..1340416) Haemophilus ducreyi 35000HP 1491486 tRNA-Met-4 tRNA tRNA-Met-4 NC_002940.2 1356791 1356864 D tRNA-Met 1356791..1356864 Haemophilus ducreyi 35000HP 1491500 tRNA-Leu-4 tRNA tRNA-Leu-4 NC_002940.2 1358568 1358650 D tRNA-Leu 1358568..1358650 Haemophilus ducreyi 35000HP 1491502 tRNA-Ser-3 tRNA tRNA-Ser-3 NC_002940.2 1500540 1500626 R tRNA-Ser complement(1500540..1500626) Haemophilus ducreyi 35000HP 1491638 tRNA-Glu-2 tRNA tRNA-Glu-2 NC_002940.2 1539567 1539639 R tRNA-Glu complement(1539567..1539639) Haemophilus ducreyi 35000HP 1491682 tRNA-Pro-2 tRNA tRNA-Pro-2 NC_002940.2 1541459 1541532 R tRNA-Pro complement(1541459..1541532) Haemophilus ducreyi 35000HP 1491684 tRNA-His-1 tRNA tRNA-His-1 NC_002940.2 1541562 1541634 R tRNA-His complement(1541562..1541634) Haemophilus ducreyi 35000HP 1491685 tRNA-Arg-3 tRNA tRNA-Arg-3 NC_002940.2 1541665 1541738 R tRNA-Arg complement(1541665..1541738) Haemophilus ducreyi 35000HP 1491686 tRNA-Glu-3 tRNA tRNA-Glu-3 NC_002940.2 1604387 1604459 R tRNA-Glu complement(1604387..1604459) Haemophilus ducreyi 35000HP 1491745 tRNA-Lys-2 tRNA tRNA-Lys-2 NC_002940.2 1623068 1623140 D tRNA-Lys 1623068..1623140 Haemophilus ducreyi 35000HP 1491767 tRNA-Asn-1 tRNA tRNA-Asn-1 NC_002940.2 1665906 1665978 R tRNA-Asn complement(1665906..1665978) Haemophilus ducreyi 35000HP 1491831 tRNA-Phe-1 tRNA tRNA-Phe-1 NC_002940.2 1665987 1666059 R tRNA-Phe complement(1665987..1666059) Haemophilus ducreyi 35000HP 1491832 ST16SrRNA_1 rRNA ST16SrRNA_1 NC_002940.2 10643 12179 D 16S ribosomal RNA 10643..12179 Haemophilus ducreyi 35000HP 1490035 ST23SrRNA_1 rRNA ST23SrRNA_1 NC_002940.2 12751 15637 D 23S ribosomal RNA 12751..15637 Haemophilus ducreyi 35000HP 1490038 ST5SrRNA_1 rRNA ST5SrRNA_1 NC_002940.2 15880 15991 D 5S ribosomal RNA 15880..15991 Haemophilus ducreyi 35000HP 1490039 ST5SrRNA_2 rRNA ST5SrRNA_2 NC_002940.2 16051 16164 D 5S ribosomal RNA 16051..16164 Haemophilus ducreyi 35000HP 1490040 ST16SrRNA_2 rRNA ST16SrRNA_2 NC_002940.2 240156 241692 D 16S ribosomal RNA 240156..241692 Haemophilus ducreyi 35000HP 1490310 ST23SrRNA_2 rRNA ST23SrRNA_2 NC_002940.2 242264 245150 D 23S ribosomal RNA 242264..245150 Haemophilus ducreyi 35000HP 1490313 ST5SrRNA_3 rRNA ST5SrRNA_3 NC_002940.2 245393 245504 D 5S ribosomal RNA 245393..245504 Haemophilus ducreyi 35000HP 1490314 ST16SrRNA_3 rRNA ST16SrRNA_3 NC_002940.2 489319 490855 D 16S ribosomal RNA 489319..490855 Haemophilus ducreyi 35000HP 1490596 ST23SrRNA_3 rRNA ST23SrRNA_3 NC_002940.2 491207 494093 D 23S ribosomal RNA 491207..494093 Haemophilus ducreyi 35000HP 1490598 ST5SrRNA_4 rRNA ST5SrRNA_4 NC_002940.2 494336 494447 D 5S ribosomal RNA 494336..494447 Haemophilus ducreyi 35000HP 1490599 ST16SrRNA_4 rRNA ST16SrRNA_4 NC_002940.2 616741 618277 D 16S ribosomal RNA 616741..618277 Haemophilus ducreyi 35000HP 1490737 ST23SrRNA_4 rRNA ST23SrRNA_4 NC_002940.2 618849 621735 D 23S ribosomal RNA 618849..621735 Haemophilus ducreyi 35000HP 1490740 ST5SrRNA_5 rRNA ST5SrRNA_5 NC_002940.2 621978 622089 D 5S ribosomal RNA 621978..622089 Haemophilus ducreyi 35000HP 1490741 ST5SrRNA_6 rRNA ST5SrRNA_6 NC_002940.2 1536128 1536239 R 5S ribosomal RNA complement(1536128..1536239) Haemophilus ducreyi 35000HP 1491680 ST23SrRNA_5 rRNA ST23SrRNA_5 NC_002940.2 1536482 1539368 R 23S ribosomal RNA complement(1536482..1539368) Haemophilus ducreyi 35000HP 1491681 ST16SrRNA_5 rRNA ST16SrRNA_5 NC_002940.2 1539720 1541256 R 16S ribosomal RNA complement(1539720..1541256) Haemophilus ducreyi 35000HP 1491683 ST5SrRNA_7 rRNA ST5SrRNA_7 NC_002940.2 1600948 1601059 R 5S ribosomal RNA complement(1600948..1601059) Haemophilus ducreyi 35000HP 1491743 ST23SrRNA_6 rRNA ST23SrRNA_6 NC_002940.2 1601302 1604188 R 23S ribosomal RNA complement(1601302..1604188) Haemophilus ducreyi 35000HP 1491744 ST16SrRNA_6 rRNA ST16SrRNA_6 NC_002940.2 1604540 1606076 R 16S ribosomal RNA complement(1604540..1606076) Haemophilus ducreyi 35000HP 1491746