-- dump date   	20140619_105450
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_431350.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_431351.1	TIGRFAMsMatches:TIGR00663
YP_431353.1	Predicted unusual protein kinase; COG0661
YP_431354.1	COG2095
YP_431355.1	COG1195
YP_431356.1	negatively supercoils closed circular double-stranded DNA
YP_431358.1	COG1124
YP_431359.1	COG0444
YP_431360.1	COG0601
YP_431361.1	COG0747
YP_431363.1	Predicted transcriptional regulator; COG0640
YP_431364.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_431366.1	COG1283
YP_431367.1	COG2133
YP_431368.1	COG0241; similar to related phosphatase
YP_431369.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_431370.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_431371.1	COG1560
YP_431373.1	COG0596
YP_431374.1	COG0168
YP_431375.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_431376.1	TIGRFAMsMatches:TIGR00563
YP_431377.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_431378.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_431379.1	COG1652
YP_431380.1	COG0758
YP_431381.1	COG0009
YP_431382.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_431384.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_431385.1	COG1291
YP_431386.1	COG1360
YP_431388.1	COG0071
YP_431389.1	COG0663
YP_431390.1	Zn-dependent oligopeptidase; COG0339
YP_431391.1	COG3529
YP_431393.1	COG0534
YP_431394.1	Heme/copper-type cytochrome/quinol oxidases, subunit 2 COG1622
YP_431395.1	Heme/copper-type cytochrome/quinol oxidases, subunit 1 COG0843
YP_431396.1	Heme/copper-type cytochrome/quinol oxidase, subunit 3; COG1845
YP_431398.1	COG3346
YP_431400.1	COG1612
YP_431401.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_431402.1	COG1680
YP_431405.1	Gluconolactonase; COG3386
YP_431408.1	COG3608
YP_431409.1	COG0415
YP_431411.1	COG0745
YP_431412.1	COG0642
YP_431414.1	COG1280
YP_431415.1	COG4977
YP_431416.1	COG0435
YP_431417.1	COG1653
YP_431418.1	TIGRFAMsMatches:TIGR02124
YP_431419.1	TIGRFAMsMatches:TIGR00075
YP_431420.1	TIGRFAMsMatches:TIGR00074
YP_431421.1	TIGRFAMsMatches:TIGR00143
YP_431422.1	TIGRFAMsMatches:TIGR00073
YP_431423.1	COG2200
YP_431426.1	COG0438
YP_431429.1	COG0438
YP_431430.1	COG0840
YP_431432.1	COG5297
YP_431433.1	COG2730
YP_431435.1	COG2304
YP_431436.1	COG3764
YP_431437.1	Retron-type reverse transcriptase; COG3344
YP_431439.1	uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; COG4625
YP_431442.1	COG3220
YP_431444.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_431446.1	COG1054
YP_431447.1	COG2041
YP_431449.1	Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) COG0375
YP_431450.1	COG0680
YP_431451.1	COG3259
YP_431452.1	COG1941
YP_431453.1	uncharacterized anaerobic dehydrogenase; COG3383
YP_431454.1	COG1894
YP_431455.1	COG0846
YP_431456.1	COG0386
YP_431459.1	COG2770
YP_431460.1	COG0515
YP_431461.1	COG0226
YP_431463.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_431464.1	COG5373
YP_431465.1	COG0412
YP_431466.1	COG3211
YP_431468.1	COG3239
YP_431469.1	COG2356
YP_431470.1	COG5587
YP_431471.1	COG1028
YP_431472.1	COG1280
YP_431474.1	COG1859
YP_431475.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_431481.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_431482.1	Glycine/D-amino acid oxidases (deaminating) COG0665
YP_431483.1	TIGRFAMsMatches:TIGR01683
YP_431484.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_431485.1	COG0352
YP_431487.1	COG0834
YP_431488.1	COG1132
YP_431494.1	COG0824
YP_431495.1	COG0517
YP_431496.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_431497.1	COG0678
YP_431499.1	COG0724
YP_431502.1	TIGRFAMsMatches:TIGR01389
YP_431503.1	COG1174
YP_431504.1	COG1125
YP_431505.1	COG1174
YP_431506.1	COG1732
YP_431508.1	COG4700
YP_431510.1	catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester
YP_431511.1	COG1690
YP_431512.1	Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; COG4650
YP_431513.1	COG1115
YP_431514.1	catalyzes the oxidative deamination of D-amino acids
YP_431516.1	COG3541
YP_431517.1	COG2199
YP_431518.1	COG3485
YP_431519.1	COG0388
YP_431523.1	COG3490
YP_431524.1	COG3489
YP_431525.1	COG3488
YP_431526.1	COG3487
YP_431527.1	COG1853
YP_431528.1	COG4185
YP_431530.1	involved in start site selection during the initiation of translation
YP_431531.1	COG0429
YP_431532.1	Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs COG1167
YP_431534.1	COG1280
YP_431536.1	COG2378
YP_431538.1	COG0500
YP_431540.1	COG3803
YP_431541.1	Glycosidase; COG0366
YP_431543.1	COG1653
YP_431544.1	COG1175
YP_431545.1	COG0395
YP_431546.1	Glycosidase; COG0366
YP_431547.1	COG3839
YP_431548.1	COG2207
YP_431549.1	COG3785
YP_431550.1	COG0642
YP_431551.1	COG1879
YP_431552.1	translation initiation factor 5A (eIF-5A); Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein
YP_431553.1	COG2192
YP_431556.1	COG1741
YP_431557.1	COG0583
YP_431558.1	Di- and tripeptidase; COG2195
YP_431559.1	COG3448
YP_431562.1	TIGRFAMsMatches:TIGR01447
YP_431563.1	TIGRFAMsMatches:TIGR00609
YP_431564.1	TIGRFAMsMatches:TIGR01450
YP_431565.1	COG2866
YP_431566.1	COG3248
YP_431568.1	COG0454
YP_431569.1	COG1100
YP_431570.1	COG4191
YP_431571.1	COG2804
YP_431572.1	COG4938
YP_431575.1	COG0842
YP_431576.1	COG1131
YP_431577.1	COG0845
YP_431579.1	TIGRFAMsMatches:TIGR00476
YP_431580.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_431590.1	COG1523
YP_431591.1	COG1653
YP_431594.1	COG1335
YP_431595.1	COG4977
YP_431596.1	COG1639
YP_431597.1	dTDP-4-dehydrorhamnose reductase; COG1091
YP_431598.1	COG0697
YP_431599.1	COG1714
YP_431600.1	COG1300
YP_431601.1	COG0793
YP_431603.1	COG0714
YP_431604.1	COG1721
YP_431607.1	COG0366
YP_431608.1	COG0463
YP_431609.1	catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate
YP_431611.1	COG2206
YP_431612.1	COG2200
YP_431613.1	TIGRFAMsMatches:TIGR01534
YP_431614.1	COG3391
YP_431615.1	COG0834
YP_431616.1	COG0545
YP_431618.1	COG5589
YP_431619.1	COG0488
YP_431620.1	COG0683
YP_431621.1	COG0248
YP_431622.1	TIGRFAMsMatches:TIGR01068
YP_431623.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_431624.1	COG0043
YP_431625.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_431626.1	COG3071
YP_431627.1	COG2959
YP_431628.1	COG1587
YP_431629.1	TIGRFAMsMatches:TIGR00212
YP_431630.1	Response regulator of the LytR/AlgR family; COG3279
YP_431631.1	COG2972
YP_431632.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_431633.1	catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP
YP_431634.1	TIGRFAMsMatches:TIGR01048
YP_431635.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_431636.1	COG3159
YP_431637.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_431639.1	COG3706
YP_431640.1	COG0784
YP_431641.1	COG2197
YP_431642.1	COG0642
YP_431646.1	COG0642
YP_431650.1	COG0748
YP_431651.1	COG2945
YP_431652.1	COG0526
YP_431655.1	COG2186
YP_431656.1	COG0334
YP_431658.1	COG3001
YP_431659.1	COG0604
YP_431660.1	COG1376
YP_431662.1	COG4191
YP_431663.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_431664.1	COG2234
YP_431667.1	COG2962
YP_431668.1	COG0069
YP_431672.1	COG1398
YP_431673.1	COG2907
YP_431674.1	COG3496
YP_431675.1	COG2230
YP_431676.1	COG3752
YP_431677.1	COG2230
YP_431681.1	COG5001
YP_431682.1	porin involved in the transport of maltose and maltodextrins
YP_431683.1	Represses the expression of the zwf, eda, glp and gap
YP_431684.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_431685.1	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; COG0363
YP_431686.1	COG0800
YP_431689.1	COG2170
YP_431691.1	COG3146
YP_431692.1	COG0834
YP_431693.1	COG2374
YP_431695.1	COG2827
YP_431696.1	COG2020
YP_431697.1	COG0596
YP_431698.1	COG1357
YP_431700.1	COG1403
YP_431704.1	COG3706
YP_431711.1	COG0776
YP_431716.1	COG3299
YP_431723.1	COG1734
YP_431730.1	TIGRFAMsMatches:TIGR01551
YP_431731.1	COG1317
YP_431732.1	COG4373
YP_431733.1	TIGRFAMsMatches:TIGR01540
YP_431737.1	DNA polymerase III, epsilon subunit and related 3'-5' exonuclease; COG0847
YP_431741.1	COG0582
YP_431744.1	COG1186
YP_431745.1	COG0737
YP_431746.1	COG0834
YP_431749.1	COG2453
YP_431750.1	COG4663
YP_431751.1	COG4665
YP_431752.1	COG4664
YP_431753.1	COG4564
YP_431754.1	COG2197
YP_431755.1	COG0791
YP_431756.1	COG4551
YP_431759.1	COG1280
YP_431760.1	COG3145
YP_431761.1	COG3217
YP_431762.1	COG4278
YP_431764.1	COG0474
YP_431765.1	COG1801
YP_431766.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_431767.1	TIGRFAMsMatches:TIGR01534
YP_431768.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_431769.1	TIGRFAMsMatches:TIGR00749
YP_431770.1	COG4989
YP_431771.1	COG5544
YP_431772.1	COG1794
YP_431774.1	periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds
YP_431775.1	functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis
YP_431776.1	with MalKGE is involved in maltose transport into the cell
YP_431777.1	with MalKFE is involved in the transport of maltose into the cell
YP_431779.1	COG0724
YP_431781.1	pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog
YP_431782.1	COG1734
YP_431783.1	COG0784
YP_431784.1	COG0840
YP_431785.1	antagonist of anti-sigma factor; COG1366
YP_431786.1	COG2208
YP_431787.1	COG0426
YP_431788.1	COG0840
YP_431789.1	COG0784
YP_431790.1	COG0643
YP_431791.1	COG0835
YP_431792.1	COG0840
YP_431793.1	COG0840
YP_431794.1	COG0835
YP_431796.1	COG1352
YP_431797.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_431798.1	COG2201
YP_431799.1	COG0454
YP_431800.1	COG2188
YP_431801.1	COG1409
YP_431806.1	COG3209
YP_431807.1	COG3209
YP_431810.1	COG2202
YP_431811.1	COG1670
YP_431813.1	with malEFG is involved in import of maltose/maltodextrin
YP_431814.1	COG0366
YP_431815.1	Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides
YP_431816.1	COG0697
YP_431817.1	COG0471
YP_431818.1	COG0454
YP_431819.1	COG0679
YP_431820.1	COG1196
YP_431821.1	COG0657
YP_431823.1	COG0386
YP_431824.1	COG2928
YP_431825.1	COG1832
YP_431826.1	COG5001
YP_431827.1	catalyzes the formation of 2-dehydropantoate from (R)-pantoate
YP_431831.1	COG0840
YP_431832.1	COG3706
YP_431833.1	COG1846
YP_431835.1	COG3673
YP_431836.1	COG3706
YP_431837.1	COG1858
YP_431839.1	COG0394
YP_431840.1	COG0640
YP_431841.1	COG0394
YP_431842.1	COG0798
YP_431844.1	COG0840
YP_431847.1	COG0583
YP_431848.1	COG0657
YP_431850.1	COG5265
YP_431851.1	COG3812
YP_431852.1	COG1054
YP_431854.1	COG2214
YP_431855.1	COG2961
YP_431856.1	COG1028
YP_431857.1	TIGRFAMsMatches:TIGR00063
YP_431858.1	COG3608
YP_431859.1	COG3471
YP_431862.1	COG2207
YP_431864.1	COG3243
YP_431865.1	COG1108
YP_431866.1	COG1121
YP_431867.1	COG0735
YP_431868.1	functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis
YP_431870.1	COG2201
YP_431871.1	COG0643
YP_431872.1	COG1352
YP_431873.1	COG0840
YP_431874.1	COG0835
YP_431875.1	COG0784
YP_431876.1	COG0784
YP_431877.1	TIGRFAMsMatches:TIGR01380
YP_431878.1	COG0810
YP_431879.1	COG1678
YP_431880.1	COG0816
YP_431881.1	COG2065
YP_431882.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_431883.1	COG0044
YP_431884.1	DNA uptake protein and related DNA-binding protein; COG1555
YP_431885.1	COG0776
YP_431890.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_431891.1	COG1281
YP_431892.1	COG1188
YP_431893.1	COG1011
YP_431894.1	TIGRFAMsMatches:TIGR01331
YP_431896.1	TIGRFAMsMatches:TIGR00577
YP_431897.1	COG1398
YP_431899.1	COG0742
YP_431900.1	TIGRFAMsMatches:TIGR00064
YP_431901.1	COG2884
YP_431902.1	COG2177
YP_431903.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_431904.1	COG2084
YP_431905.1	COG3622
YP_431906.1	functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system
YP_431907.1	COG0745
YP_431908.1	COG0642
YP_431910.1	COG1309
YP_431913.1	TIGRFAMsMatches:TIGR01461
YP_431916.1	COG0582
YP_431917.1	COG4281
YP_431919.1	COG1132
YP_431921.1	COG0210
YP_431923.1	COG1974
YP_431924.1	COG4197
YP_431930.1	COG3335
YP_431931.1	COG3415
YP_431940.1	COG2931
YP_431947.1	COG2003
YP_431949.1	COG3311
YP_431950.1	COG0582
YP_431951.1	COG3526
YP_431952.1	COG0666
YP_431953.1	COG2199
YP_431957.1	COG3220
YP_431961.1	COG3157
YP_431962.1	COG0515
YP_431964.1	TIGRFAMsMatches:TIGR01692
YP_431965.1	COG1024
YP_431966.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_431967.1	COG1960
YP_431968.1	TIGRFAMsMatches:TIGR01722
YP_431970.1	COG1434
YP_431971.1	COG0784
YP_431972.1	TIGRFAMsMatches:TIGR00109
YP_431973.1	COG2863
YP_431974.1	COG2207
YP_431976.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_431977.1	COG1611
YP_431979.1	Required for the synthesis of the thiazole moiety
YP_431980.1	COG3437
YP_431981.1	COG3495
YP_431982.1	COG0803
YP_431983.1	COG1136
YP_431984.1	COG0577
YP_431985.1	COG1073
YP_431986.1	COG3706
YP_431995.1	COG0834
YP_431996.1	COG3124
YP_431997.1	COG0784
YP_431998.1	COG1776
YP_431999.1	COG0642
YP_432000.1	COG2738
YP_432009.1	COG1926
YP_432011.1	COG1285
YP_432016.1	TIGRFAMsMatches:TIGR00203
YP_432017.1	COG1271
YP_432019.1	COG0642
YP_432020.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_432023.1	COG4608
YP_432024.1	COG0444
YP_432025.1	COG1173
YP_432026.1	COG0601
YP_432027.1	COG4166
YP_432028.1	COG0421
YP_432029.1	COG0076
YP_432030.1	COG1167
YP_432031.1	COG0834
YP_432032.1	COG0834
YP_432035.1	COG1733
YP_432036.1	COG3256
YP_432037.1	Involved in anaerobic NO protection and iron metabolism
YP_432038.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_432046.1	COG1028
YP_432047.1	COG0111
YP_432051.1	COG2872
YP_432052.1	COG1012
YP_432054.1	COG0174
YP_432057.1	COG2343
YP_432060.1	COG2206
YP_432061.1	COG3315
YP_432063.1	COG1737
YP_432065.1	COG5001
YP_432066.1	unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.
YP_432067.1	COG4663
YP_432068.1	COG1607
YP_432069.1	COG4664
YP_432070.1	COG4665
YP_432071.1	COG0226
YP_432072.1	COG1196
YP_432073.1	COG4590
YP_432074.1	TIGRFAMsMatches:TIGR00974
YP_432075.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_432076.1	TIGRFAMsMatches:TIGR02135
YP_432077.1	COG2105
YP_432079.1	COG1055
YP_432080.1	COG4757
YP_432081.1	COG0537
YP_432082.1	COG0654
YP_432083.1	COG0834
YP_432084.1	COG2606
YP_432085.1	COG2885
YP_432086.1	COG0668
YP_432087.1	COG3897
YP_432090.1	COG2981
YP_432091.1	COG0784
YP_432092.1	COG0642
YP_432093.1	TIGRFAMsMatches:TIGR02154
YP_432094.1	TIGRFAMsMatches:TIGR01474
YP_432095.1	COG0475
YP_432096.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_432097.1	COG1773
YP_432098.1	COG1251
YP_432099.1	COG0189
YP_432100.1	COG2885
YP_432102.1	TIGRFAMsMatches:TIGR00189
YP_432103.1	COG2220
YP_432104.1	COG4943
YP_432105.1	COG0716
YP_432106.1	COG2947
YP_432107.1	COG3706
YP_432109.1	COG0306
YP_432110.1	COG2404
YP_432111.1	COG5483
YP_432114.1	COG2202
YP_432118.1	COG1032
YP_432119.1	COG1320
YP_432120.1	COG2212
YP_432121.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_432122.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_432123.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_432124.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_432125.1	COG3338
YP_432127.1	COG1028
YP_432128.1	COG0642
YP_432129.1	TIGRFAMsMatches:TIGR00222
YP_432130.1	COG5018
YP_432131.1	COG1515
YP_432134.1	COG1896
YP_432137.1	COG4278
YP_432138.1	COG0834
YP_432141.1	COG2050
YP_432143.1	COG1075
YP_432145.1	COG2207
YP_432146.1	COG3227
YP_432148.1	COG0637
YP_432151.1	Hydrolase of the alpha/beta superfamily; COG1073
YP_432156.1	COG1234
YP_432158.1	COG3851
YP_432160.1	COG3335
YP_432161.1	COG3415
YP_432163.1	COG4977
YP_432164.1	COG0596
YP_432165.1	COG0243
YP_432166.1	COG1733
YP_432167.1	COG1309
YP_432168.1	catalyzes the formation of betaine from betaine aldehyde
YP_432169.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_432170.1	COG2113
YP_432171.1	COG4176
YP_432172.1	COG4175
YP_432174.1	COG5473
YP_432175.1	COG2008
YP_432176.1	COG0840
YP_432178.1	COG0642
YP_432179.1	COG3706
YP_432180.1	COG0031
YP_432181.1	Predicted membrane protein; COG4984
YP_432183.1	COG4929
YP_432184.1	COG0477
YP_432187.1	COG3469
YP_432188.1	COG5429
YP_432190.1	TIGRFAMsMatches:TIGR01350
YP_432192.1	COG3184
YP_432194.1	COG2207
YP_432195.1	COG1296
YP_432196.1	COG4392
YP_432199.1	COG1199
YP_432201.1	COG4977
YP_432203.1	COG3204
YP_432204.1	COG0834
YP_432205.1	COG0765
YP_432206.1	COG0765
YP_432207.1	COG1126
YP_432208.1	COG4245
YP_432210.1	COG4248
YP_432213.1	with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity
YP_432214.1	COG0419
YP_432218.1	COG1879
YP_432223.1	COG0583
YP_432224.1	COG0697
YP_432225.1	COG4681
YP_432226.1	COG0834
YP_432227.1	COG0462
YP_432228.1	COG3000
YP_432231.1	COG0224
YP_432232.1	produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit
YP_432233.1	COG0711
YP_432234.1	TIGRFAMsMatches:TIGR01260
YP_432235.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0
YP_432237.1	COG0355
YP_432238.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit
YP_432239.1	COG4191
YP_432240.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_432248.1	COG2358
YP_432249.1	COG4666
YP_432250.1	COG3517
YP_432251.1	COG2129
YP_432253.1	COG0454
YP_432254.1	COG2804
YP_432259.1	COG0745
YP_432260.1	COG0642
YP_432261.1	COG0477
YP_432263.1	COG2339
YP_432265.1	TIGRFAMsMatches:TIGR01262
YP_432266.1	COG0179
YP_432267.1	COG3508
YP_432268.1	TIGRFAMsMatches:TIGR01263
YP_432269.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_432270.1	COG1502
YP_432273.1	COG4206
YP_432275.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_432276.1	COG2087
YP_432277.1	COG2038
YP_432278.1	COG0368
YP_432279.1	Fructose-2,6-bisphosphatase; COG0406
YP_432280.1	COG2200
YP_432282.1	COG0642
YP_432284.1	COG4452
YP_432285.1	COG1522
YP_432286.1	TIGRFAMsMatches:TIGR00518
YP_432291.1	COG3484
YP_432292.1	COG4196
YP_432293.1	COG2308
YP_432294.1	COG1305
YP_432295.1	COG2308
YP_432296.1	COG2307
YP_432298.1	COG1842
YP_432299.1	COG3789
YP_432301.1	COG2268
YP_432302.1	COG0419
YP_432306.1	COG0076
YP_432308.1	COG1651
YP_432309.1	COG1309
YP_432310.1	COG5001
YP_432313.1	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzyme COG1249
YP_432314.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_432315.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_432316.1	COG0628
YP_432319.1	COG1145
YP_432320.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_432321.1	COG1012
YP_432323.1	COG1309
YP_432324.1	COG0218
YP_432325.1	COG2863
YP_432326.1	COG0526
YP_432327.1	COG3568
YP_432328.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_432329.1	TIGRFAMsMatches:TIGR00009
YP_432330.1	COG2003
YP_432331.1	TIGRFAMsMatches:TIGR00521
YP_432332.1	COG0756
YP_432333.1	COG1109
YP_432334.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_432336.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis
YP_432337.2	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_432338.1	COG4324
YP_432339.1	COG5001
YP_432340.1	TIGRFAMsMatches:TIGR01818
YP_432341.1	COG3852
YP_432343.1	TIGRFAMsMatches:TIGR00653
YP_432344.1	COG1217
YP_432345.1	TIGRFAMsMatches:TIGR01249
YP_432346.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_432348.1	COG3203
YP_432349.1	COG3025
YP_432351.1	COG1391
YP_432352.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_432353.1	TIGRFAMsMatches:TIGR02195
YP_432354.1	TIGRFAMsMatches:TIGR02193
YP_432355.1	COG0463
YP_432356.1	COG0438
YP_432357.1	COG0438
YP_432359.1	COG0463
YP_432360.1	COG1062
YP_432361.1	COG0438
YP_432362.1	TIGRFAMsMatches:TIGR02201
YP_432363.1	COG0438
YP_432364.1	COG1560
YP_432365.1	catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose
YP_432366.1	COG0221
YP_432367.1	COG1960
YP_432368.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_432369.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_432370.1	COG0212
YP_432371.1	COG3027
YP_432375.1	COG3079
YP_432376.1	COG0006
YP_432377.1	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; COG0654
YP_432378.1	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; COG0654
YP_432379.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_432380.1	TIGRFAMsMatches:TIGR00945
YP_432381.1	TIGRFAMsMatches:TIGR01410
YP_432382.1	COG1826
YP_432383.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_432384.1	COG0139
YP_432385.1	TIGRFAMsMatches:TIGR01982
YP_432386.1	COG3165
YP_432387.1	COG2226
YP_432391.1	COG1020
YP_432393.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_432394.2	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_432395.1	COG3748
YP_432396.1	Catalyzes the deamination of guanine
YP_432397.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_432398.1	COG2351
YP_432399.1	COG3195
YP_432400.1	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_432401.1	COG0044
YP_432402.1	COG1975
YP_432403.1	COG4631
YP_432404.1	COG4630
YP_432406.1	COG3845
YP_432407.1	COG4603
YP_432408.1	COG1079
YP_432409.1	COG1744
YP_432410.1	catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.
YP_432411.1	COG1309
YP_432413.1	COG0727
YP_432416.1	COG2829
YP_432417.1	COG0265
YP_432419.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_432420.1	COG0789
YP_432421.1	COG0477
YP_432423.1	COG0500
YP_432424.1	Histidyl-tRNA synthetase; COG0124
YP_432425.1	COG2885
YP_432426.1	COG1252
YP_432427.1	COG0834
YP_432429.1	COG4805
YP_432430.1	COG4166
YP_432431.1	COG0601
YP_432432.1	COG1173
YP_432433.1	COG0444
YP_432434.1	COG4608
YP_432435.1	COG2207
YP_432437.1	COG0840
YP_432438.1	COG3979
YP_432439.1	COG3325
YP_432440.1	COG1396
YP_432441.1	COG3550
YP_432447.1	COG0583
YP_432448.1	COG2249
YP_432449.1	COG1309
YP_432451.1	COG3257
YP_432459.1	TIGRFAMsMatches:TIGR01722
YP_432460.1	COG1082
YP_432461.1	COG3962
YP_432462.1	COG0524
YP_432464.1	COG4130
YP_432468.1	COG1879
YP_432469.1	COG1129
YP_432470.1	COG1172
YP_432471.1	COG1879
YP_432472.1	COG0454
YP_432473.1	COG0834
YP_432475.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_432476.1	COG0583
YP_432477.1	COG3263
YP_432479.1	DNA replication protein; COG1484
YP_432480.1	Transposase and inactivated derivatives COG4584
YP_432482.1	COG3415
YP_432483.1	COG3335
YP_432485.1	COG0491
YP_432486.1	COG3531
YP_432488.1	COG1902
YP_432489.1	COG0346
YP_432490.1	COG0583
YP_432491.1	COG3540
YP_432492.1	COG0583
YP_432493.1	COG1741
YP_432496.1	COG0834
YP_432497.1	COG3209
YP_432504.1	COG1132
YP_432505.1	COG1309
YP_432506.1	COG0834
YP_432509.1	COG0845
YP_432510.1	COG0577
YP_432511.1	COG1538
YP_432513.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_432514.1	COG0733
YP_432515.1	COG2867
YP_432516.1	COG2914
YP_432517.1	COG2913
YP_432518.1	COG0735
YP_432519.1	TIGRFAMsMatches:TIGR00634
YP_432520.1	COG0576
YP_432521.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_432522.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_432523.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_432524.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_432525.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_432526.1	COG0782
YP_432527.1	COG1534
YP_432528.1	COG0293
YP_432529.1	COG0465; cell division protein
YP_432530.1	TIGRFAMsMatches:TIGR01496
YP_432531.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_432532.1	TIGRFAMsMatches:TIGR00419
YP_432533.1	TIGRFAMsMatches:TIGR00810
YP_432534.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_432535.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_432536.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_432537.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_432538.1	TIGRFAMsMatches:TIGR00431
YP_432539.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_432540.1	COG1185
YP_432541.1	COG1073
YP_432545.1	COG0410
YP_432546.1	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_432547.1	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_432548.1	COG0559
YP_432549.1	COG0683
YP_432550.1	TIGRFAMsMatches:TIGR00763
YP_432551.1	COG2606
YP_432552.1	COG3118
YP_432555.1	COG0577
YP_432556.1	COG0577
YP_432557.1	COG1136
YP_432558.1	COG0845
YP_432560.1	COG0277
YP_432561.1	COG1556
YP_432562.1	TIGRFAMsMatches:TIGR00273
YP_432563.1	COG0247
YP_432564.1	COG2186
YP_432565.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_432566.1	TIGRFAMsMatches:TIGR01348
YP_432567.1	COG0790
YP_432572.1	COG0697
YP_432574.1	COG2207
YP_432575.1	COG0702
YP_432576.1	COG0583
YP_432579.1	COG2153
YP_432580.1	COG0384
YP_432582.1	COG1686
YP_432586.1	COG1653
YP_432587.1	COG1175
YP_432588.1	COG0395
YP_432589.1	COG3839
YP_432590.1	COG0246
YP_432591.1	COG2207
YP_432593.1	COG1929
YP_432594.1	COG1182
YP_432595.1	COG0583
YP_432596.1	COG0583
YP_432600.1	COG0523
YP_432601.1	COG2207
YP_432602.1	COG1629
YP_432603.1	COG3553
YP_432605.1	TIGRFAMsMatches:TIGR01068
YP_432606.1	COG0840
YP_432607.1	COG3791
YP_432609.1	COG3706
YP_432612.1	COG1409
YP_432618.1	COG3293
YP_432620.1	COG0789
YP_432621.1	COG0500
YP_432622.1	COG2944
YP_432624.1	COG3415
YP_432625.1	COG3335
YP_432631.1	COG2924
YP_432632.1	TIGRFAMsMatches:TIGR01084
YP_432634.1	COG0131
YP_432635.1	TIGRFAMsMatches:TIGR01855
YP_432636.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_432637.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_432638.1	COG5488
YP_432639.1	COG2861
YP_432640.1	COG0793
YP_432641.1	COG4942
YP_432642.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_432643.1	COG0607
YP_432644.1	TIGRFAMsMatches:TIGR02181
YP_432645.1	similar to hypothetical 17.7K protein (secB region) from Escherichia coli gi|1128972|gb|AAA83908.1| ORF; putative
YP_432646.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_432647.1	COG1764
YP_432648.1	COG0219
YP_432650.1	COG4175
YP_432651.1	with ProVX is involved in the high-affinity uptake of glycine betaine
YP_432652.1	with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine
YP_432654.1	COG0183
YP_432655.1	tRNA nucleotidyltransferase/poly(A) polymerase; COG0617
YP_432656.1	COG3018
YP_432658.1	COG1018
YP_432659.1	COG3213
YP_432661.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_432663.1	COG0834
YP_432666.1	COG1943
YP_432668.1	COG3209
YP_432671.1	COG3209
YP_432674.1	COG0454
YP_432675.1	COG3760
YP_432676.1	COG0108
YP_432678.1	COG0642
YP_432679.1	COG4567
YP_432680.1	COG2313
YP_432681.1	COG0524
YP_432682.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_432683.1	COG4594
YP_432684.1	COG1120
YP_432686.1	COG4773
YP_432687.1	acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase; COG0028
YP_432689.1	COG3011
YP_432692.1	COG2110; similar to the C-terminal domain of histone macroH2A1
YP_432693.1	COG0431
YP_432694.1	COG2318
YP_432696.1	COG2166
YP_432697.1	COG2151
YP_432698.1	COG0316
YP_432699.1	COG0520
YP_432700.1	TIGRFAMsMatches:TIGR01981
YP_432701.1	TIGRFAMsMatches:TIGR01978
YP_432703.1	with SufCD activates cysteine desulfurase SufS
YP_432704.1	COG1959
YP_432705.1	COG3085
YP_432708.1	COG1047
YP_432709.1	COG2346
YP_432711.1	COG5001
YP_432713.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_432715.1	COG0642
YP_432718.1	COG2885
YP_432720.1	COG0457
YP_432721.1	COG0642
YP_432722.1	COG0745
YP_432725.1	COG1835
YP_432727.1	TIGRFAMsMatches:TIGR01950
YP_432728.1	COG0431
YP_432730.1	COG2909
YP_432731.1	COG1062
YP_432732.1	COG0627
YP_432733.1	COG3791
YP_432744.1	COG3335
YP_432748.1	COG0845
YP_432749.1	COG0841
YP_432750.1	COG0834
YP_432751.1	COG1653
YP_432752.1	COG1902
YP_432754.1	COG0687
YP_432755.1	COG3842
YP_432756.1	COG1176
YP_432757.1	COG1177
YP_432759.1	COG0834
YP_432761.1	COG1051
YP_432762.1	COG2719
YP_432763.1	COG2718
YP_432764.1	COG2766
YP_432765.1	COG2206
YP_432766.1	COG1764
YP_432770.1	COG0501
YP_432773.1	COG1012
YP_432774.1	COG1748
YP_432775.1	COG1522
YP_432779.1	COG0330
YP_432780.1	COG1030
YP_432782.1	COG4886
YP_432784.1	COG0697
YP_432785.1	COG3012
YP_432786.1	catalyzes the formation of inosine from adenosine
YP_432787.1	COG1744
YP_432791.1	N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid
YP_432792.1	catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde
YP_432793.1	COG0454
YP_432794.1	COG3181
YP_432798.1	COG1236
YP_432799.1	catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine
YP_432800.1	Catalyzes the formation of PRPP from ATP and ribose 5-phosphate
YP_432801.1	COG3706
YP_432802.1	COG1052
YP_432804.1	COG0432
YP_432807.1	Predicted membrane protein; COG1295
YP_432810.1	COG4399
YP_432811.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_432812.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_432813.1	COG5001
YP_432814.1	TIGRFAMsMatches:TIGR00676
YP_432815.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_432816.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_432817.1	COG0500
YP_432818.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_432819.1	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; COG0057
YP_432820.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_432821.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_432822.1	COG2267
YP_432823.1	COG2885
YP_432824.1	COG0784
YP_432831.1	COG1408
YP_432834.1	COG2304
YP_432835.1	COG4850
YP_432836.1	COG3122
YP_432837.1	COG1878
YP_432838.1	COG0500
YP_432839.1	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C
YP_432842.1	COG3179
YP_432843.1	COG0154
YP_432844.1	COG0583
YP_432845.1	COG0657
YP_432847.1	COG3488
YP_432853.1	COG0346
YP_432854.1	COG2345
YP_432855.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_432856.1	COG2234
YP_432857.1	COG0782
YP_432859.1	COG2013
YP_432863.1	COG2153
YP_432865.1	COG2013
YP_432866.1	COG2013
YP_432867.1	COG2013
YP_432868.1	COG4783
YP_432871.1	COG2080
YP_432872.1	COG1529
YP_432873.1	Xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family; COG1975
YP_432874.1	COG1279
YP_432875.2	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_432876.1	COG0326
YP_432878.1	COG2930
YP_432879.1	COG3000
YP_432886.1	COG2077
YP_432887.1	COG0400
YP_432888.1	COG0454
YP_432889.1	COG0390
YP_432890.1	COG3842
YP_432891.1	COG0438
YP_432892.1	COG3840
YP_432893.1	permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine
YP_432894.1	part of the thiamine and TPP transport system tbpA-thiPQ
YP_432896.1	COG1670
YP_432897.1	COG0510
YP_432900.1	COG4191
YP_432901.1	COG2200
YP_432902.1	COG0625
YP_432906.1	COG0730
YP_432907.1	COG0583
YP_432908.1	COG4566
YP_432911.1	COG0515
YP_432913.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_432914.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_432915.1	COG1396
YP_432916.1	COG1840
YP_432917.1	COG0642
YP_432918.1	COG0745
YP_432919.1	COG3181
YP_432921.1	COG3333
YP_432922.1	COG2303
YP_432923.1	COG0642
YP_432924.1	COG2197
YP_432925.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_432926.1	COG0277
YP_432927.1	COG0179
YP_432928.1	COG0840
YP_432930.1	COG0583
YP_432931.1	COG2128
YP_432932.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_432933.1	COG1846
YP_432934.1	TIGRFAMsMatches:TIGR01536
YP_432935.1	COG1181
YP_432936.1	COG1363
YP_432937.1	COG0834
YP_432938.1	COG1179
YP_432940.1	COG2201
YP_432941.1	COG3706
YP_432943.1	COG0661
YP_432945.1	COG2091
YP_432946.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_432947.1	COG0584
YP_432951.1	COG3325
YP_432952.1	COG1942
YP_432953.1	COG0697
YP_432954.1	COG1167
YP_432956.1	COG0346
YP_432957.1	COG1304
YP_432959.1	COG2030
YP_432961.1	COG0628
YP_432962.1	COG1960
YP_432965.1	COG3209
YP_432967.1	COG1757
YP_432968.1	COG1404
YP_432969.1	Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; COG4650
YP_432971.1	COG3431
YP_432973.1	COG0583
YP_432974.1	COG2095
YP_432976.1	COG0735
YP_432977.1	COG0139
YP_432978.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_432979.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_432980.1	COG1734
YP_432981.1	COG0739
YP_432982.1	TIGRFAMsMatches:TIGR02063
YP_432983.1	COG0566
YP_432984.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_432985.1	TIGRFAMsMatches:TIGR00165
YP_432986.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_432987.1	unwinds double stranded DNA
YP_432988.1	TIGRFAMsMatches:TIGR00492
YP_432989.1	dTDP-4-dehydrorhamnose reductase; COG1091
YP_432990.1	COG0664
YP_432991.1	COG0635
YP_432992.1	COG0204
YP_432993.1	COG0834
YP_432994.1	COG0834
YP_432995.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_432996.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_432997.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_432998.1	COG0462
YP_432999.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_433000.1	TIGRFAMsMatches:TIGR00548
YP_433001.1	COG0457
YP_433003.2	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_433004.1	TIGRFAMsMatches:TIGR00019
YP_433005.1	COG2890
YP_433006.1	ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase
YP_433007.1	COG0415
YP_433008.1	COG4067
YP_433009.1	COG1875
YP_433010.1	COG1309
YP_433011.1	COG0517
YP_433013.1	TIGRFAMsMatches:TIGR01215
YP_433014.1	TIGRFAMsMatches:TIGR01968
YP_433015.1	blocks the formation of polar Z-ring septums
YP_433016.1	COG0671
YP_433017.1	COG0438
YP_433018.1	COG0667
YP_433019.1	COG3243
YP_433021.1	COG0840
YP_433023.1	COG0427
YP_433024.1	COG1047
YP_433025.1	COG0204
YP_433026.1	COG3176
YP_433027.1	COG0745
YP_433028.1	COG0642
YP_433029.1	COG1740
YP_433031.1	COG3842
YP_433032.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_433033.1	Ornithine/acetylornithine aminotransferase; COG4992
YP_433034.1	COG0278
YP_433037.1	COG0531
YP_433038.1	COG4536
YP_433039.1	COG4137
YP_433040.1	TIGRFAMsMatches:TIGR00959
YP_433041.1	TIGRFAMsMatches:TIGR00002
YP_433042.1	TIGRFAMsMatches:TIGR02273
YP_433043.1	TIGRFAMsMatches:TIGR00088
YP_433044.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_433045.1	TIGRFAMsMatches:TIGR02225
YP_433046.1	COG1651
YP_433047.1	COG0436
YP_433048.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_433049.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_433050.1	TIGRFAMsMatches:TIGR00644
YP_433051.1	TIGRFAMsMatches:TIGR00020
YP_433052.1	TIGRFAMsMatches:TIGR00499
YP_433053.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_433054.1	COG1639
YP_433055.1	COG0354
YP_433057.1	COG2938
YP_433058.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_433059.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_433060.1	Negative regulator of sigma E activity; COG3073
YP_433061.1	Negative regulator of sigma E activity; COG3026
YP_433062.1	Positive regulator of sigma E activity; COG3086
YP_433063.1	Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain; COG0265
YP_433064.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_433065.1	TIGRFAMsMatches:TIGR02227
YP_433067.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_433068.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_433069.1	TIGRFAMsMatches:TIGR00613
YP_433070.1	COG0642
YP_433071.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_433072.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_433073.1	Guanosine polyphosphate pyrophosphohydrolase/synthetase; COG0317
YP_433074.1	COG1694
YP_433076.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_433077.1	COG1639
YP_433078.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_433079.1	putative molecular chaperone; COG1214
YP_433080.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_433082.1	COG0500
YP_433083.1	COG0697
YP_433084.1	COG3038
YP_433085.1	COG2353
YP_433087.1	TIGRFAMsMatches:TIGR02121
YP_433088.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain
YP_433089.1	COG2207
YP_433092.1	COG3735
YP_433093.1	COG0583
YP_433094.1	COG4608
YP_433095.1	COG0444
YP_433096.1	COG1173
YP_433097.1	COG0601
YP_433098.1	COG0747
YP_433100.1	Zn-dependent protease with chaperone function COG0501
YP_433103.1	TIGRFAMsMatches:TIGR00441
YP_433104.1	catalyzes the formation of fumarate from aspartate
YP_433105.1	COG1444
YP_433107.1	COG0235
YP_433108.1	COG1791
YP_433109.1	TIGRFAMsMatches:TIGR01691
YP_433111.1	COG0642
YP_433112.1	COG0745
YP_433113.1	COG3868
YP_433114.1	COG2207
YP_433115.1	COG1012
YP_433117.1	COG2804
YP_433118.1	COG3308
YP_433119.1	COG0655
YP_433120.1	TIGRFAMsMatches:TIGR00014
YP_433122.1	COG0526
YP_433123.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_433124.2	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_433125.1	COG0037
YP_433127.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_433128.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_433129.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_433131.1	COG2919
YP_433132.1	TIGRFAMsMatches:TIGR00453
YP_433133.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_433134.1	COG0585
YP_433135.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_433136.1	TIGRFAMsMatches:TIGR00080
YP_433137.1	COG2035
YP_433138.1	COG0739
YP_433139.1	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); COG0568
YP_433141.1	Retron-type reverse transcriptase; COG3344
YP_433144.1	COG0596
YP_433146.1	COG1167
YP_433147.1	COG3467
YP_433149.1	TIGRFAMsMatches:TIGR01083
YP_433150.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_433151.1	COG4659
YP_433152.1	RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents
YP_433153.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_433154.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_433155.1	COG4657
YP_433157.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_433159.1	COG0489
YP_433160.2	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_433161.1	COG0235
YP_433162.1	COG3068
YP_433163.1	transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis
YP_433165.1	TIGRFAMsMatches:TIGR00639
YP_433166.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_433167.1	COG3249
YP_433168.1	COG0558
YP_433169.1	ATPase involved in DNA replication initiation COG0593
YP_433170.1	ATPase involved in chromosome partitioning; COG1192
YP_433171.1	COG3098
YP_433172.1	COG1573
YP_433173.1	COG0204
YP_433174.1	TIGRFAMsMatches:TIGR02258
YP_433176.1	COG5001
YP_433177.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_433178.1	COG3577
YP_433180.2	COG3023
YP_433181.1	COG3725
YP_433182.1	putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function
YP_433183.1	COG0840
YP_433184.1	COG2096
YP_433185.1	catalyzes the formation of 2-dehydropantoate from (R)-pantoate
YP_433186.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_433188.1	COG2927
YP_433189.1	COG0260
YP_433191.1	COG0795
YP_433192.1	COG0795
YP_433193.1	COG0840
YP_433194.1	COG0834
YP_433195.1	COG0683
YP_433196.1	COG0693
YP_433197.1	COG4321
YP_433198.1	COG1233
YP_433199.1	COG3647
YP_433200.1	microsomal dipeptidase-like protein; COG2355
YP_433202.1	COG0840
YP_433203.1	COG4977
YP_433205.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_433206.1	Arginine/ornithine N-succinyltransferase beta subunit COG3138
YP_433207.1	Arginine/ornithine N-succinyltransferase beta subunit COG3138
YP_433208.1	NAD-dependent aldehyde dehydrogenase; COG1012
YP_433209.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_433210.1	COG0515
YP_433211.1	COG0631
YP_433212.1	COG1716
YP_433213.1	COG2373
YP_433214.1	TIGRFAMsMatches:TIGR02073
YP_433216.1	COG1896
YP_433219.1	COG0845
YP_433220.1	COG1131
YP_433221.1	COG0842
YP_433222.1	COG2606
YP_433226.1	COG2110; similar to the C-terminal domain of histone macroH2A1
YP_433227.1	COG3209
YP_433234.1	COG0596
YP_433235.1	COG4221
YP_433236.1	Malate/lactate dehydrogenase; COG0039
YP_433238.1	COG2234
YP_433239.1	COG3961
YP_433243.1	COG0393
YP_433244.1	COG0393
YP_433246.1	COG1280
YP_433249.1	thermonuclease; COG1525
YP_433252.1	COG0454
YP_433260.1	COG0687
YP_433261.1	COG5001
YP_433262.1	COG1611
YP_433263.1	COG0697
YP_433264.1	COG2207
YP_433265.1	Superfamily I DNA and RNA helicase; COG0210
YP_433266.1	COG0583
YP_433268.1	COG0251
YP_433269.1	COG3181
YP_433270.1	COG5001
YP_433272.1	COG0266
YP_433273.1	COG0834
YP_433274.1	COG0834
YP_433279.1	COG2378
YP_433280.1	COG0346
YP_433281.1	COG3575
YP_433284.1	COG1028
YP_433286.1	COG3208
YP_433287.1	COG1028
YP_433288.1	COG1020
YP_433289.1	COG1020
YP_433290.1	COG1020
YP_433292.1	COG1296
YP_433293.1	COG4392
YP_433295.1	COG0388
YP_433299.1	COG0575
YP_433300.1	COG1132
YP_433301.1	COG1132
YP_433303.1	COG2818
YP_433304.1	COG0204
YP_433305.1	COG0697
YP_433306.1	COG5460
YP_433307.1	catalyzes the conversion of NADPH to NADH
YP_433308.1	COG1639
YP_433310.1	COG0676
YP_433311.1	COG1335
YP_433313.1	COG0477
YP_433314.1	COG0300
YP_433315.1	COG0661
YP_433317.1	COG0564
YP_433319.1	molecular chaperone
YP_433324.1	Represses a number of genes involved in the response to DNA damage
YP_433325.1	COG2249
YP_433329.1	COG3209
YP_433331.1	COG3209
YP_433336.1	COG3209
YP_433339.1	COG3209
YP_433341.1	COG3209
YP_433343.1	COG3209
YP_433345.1	COG3209
YP_433348.1	COG3209
YP_433350.1	COG3209
YP_433352.1	COG3209
YP_433356.1	Transposase and inactivated derivatives COG3547
YP_433357.1	COG3547
YP_433359.1	COG3155
YP_433360.1	COG3706
YP_433363.1	COG0687
YP_433364.1	COG5001
YP_433365.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_433368.1	COG0477
YP_433369.1	COG0720
YP_433370.1	COG0784
YP_433371.1	COG4642
YP_433374.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_433375.1	COG1026
YP_433376.1	COG1806
YP_433377.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_433378.1	COG0702
YP_433379.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_433380.1	Retron-type reverse transcriptase; COG3344
YP_433382.1	COG3103
YP_433383.1	COG2350
YP_433384.1	Involved in cell division; probably involved in intracellular septation
YP_433385.1	COG0613
YP_433386.1	COG1502
YP_433387.1	COG3318
YP_433389.1	COG1530
YP_433390.1	COG0564
YP_433391.1	COG0546
YP_433392.1	COG0616
YP_433393.1	TIGRFAMsMatches:TIGR00172
YP_433395.1	COG1399
YP_433396.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_433397.1	COG0416
YP_433398.1	TIGRFAMsMatches:TIGR00128
YP_433399.1	TIGRFAMsMatches:TIGR01830
YP_433400.1	carries the fatty acid chain in fatty acid biosynthesis
YP_433401.1	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; COG0115
YP_433402.1	COG1559
YP_433403.1	TIGRFAMsMatches:TIGR00041
YP_433404.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_433405.1	COG4445
YP_433406.1	TIGRFAMsMatches:TIGR01854
YP_433407.1	COG0652
YP_433408.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_433409.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_433410.1	COG0190
YP_433412.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_433413.1	TIGRFAMsMatches:TIGR00493
YP_433414.1	binds and unfolds substrates as part of the ClpXP protease
YP_433416.1	TIGRFAMsMatches:TIGR00763
YP_433417.1	COG0776
YP_433418.1	COG0760
YP_433419.1	COG3271
YP_433421.1	COG2067
YP_433423.1	COG0726
YP_433424.1	COG2214
YP_433427.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_433430.1	COG1012
YP_433431.1	acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase; catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_433432.1	COG5002
YP_433435.1	COG3501
YP_433437.1	COG0793
YP_433438.1	COG1250
YP_433439.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_433441.1	ATPase involved in DNA repair; COG0419
YP_433442.1	COG2137
YP_433443.1	COG4623
YP_433444.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_433446.1	COG3323
YP_433447.1	COG1051
YP_433448.1	COG0494
YP_433449.1	COG0663
YP_433450.1	COG3313
YP_433451.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_433453.1	COG0587
YP_433454.1	COG0389
YP_433456.1	COG0454
YP_433457.1	Secreted/periplasmic Zn-dependent peptidase, insulinase-like COG1025
YP_433459.1	COG0687
YP_433460.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component
YP_433461.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component
YP_433462.1	functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase
YP_433463.1	COG0834
YP_433464.1	COG0826
YP_433465.1	COG0826
YP_433466.1	COG3154
YP_433467.1	COG1280
YP_433469.1	COG0841
YP_433470.1	COG0845
YP_433471.1	COG0729
YP_433472.1	COG2911
YP_433475.1	COG1853
YP_433476.1	COG2813
YP_433477.1	COG0564
YP_433479.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_433480.1	COG5615
YP_433481.1	COG0500
YP_433482.1	COG1682
YP_433483.1	COG1134
YP_433484.1	COG0463
YP_433485.1	COG0451
YP_433486.1	COG0463
YP_433487.1	COG1216
YP_433488.1	COG0500
YP_433489.1	COG0500
YP_433490.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_433491.1	COG3706
YP_433492.1	COG2908
YP_433494.1	COG0225
YP_433498.1	COG1309
YP_433505.1	COG2110; similar to the C-terminal domain of histone macroH2A1
YP_433511.1	COG0662
YP_433515.1	COG0500
YP_433516.1	COG1959
YP_433517.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_433518.1	COG2836
YP_433519.1	TIGRFAMsMatches:TIGR00847
YP_433520.1	TIGRFAMsMatches:TIGR01511
YP_433521.1	COG3198
YP_433522.1	COG0348
YP_433523.1	TIGRFAMsMatches:TIGR00782
YP_433524.1	Cbb3-type cytochrome oxidase, subunit 3; COG4736
YP_433525.1	TIGRFAMsMatches:TIGR00781
YP_433526.1	CcoN; FixN
YP_433527.1	COG3571
YP_433528.1	COG2933
YP_433530.1	COG0425
YP_433531.1	COG0697
YP_433532.1	COG4232
YP_433533.1	COG3101
YP_433534.1	COG4268
YP_433535.1	COG1401
YP_433537.1	COG3101
YP_433539.1	Superfamily II DNA and RNA helicase; COG0513
YP_433540.1	COG0111
YP_433544.1	putative metalloprotease
YP_433546.1	COG0583
YP_433547.1	COG2367
YP_433549.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_433550.1	COG0229
YP_433551.1	COG2818
YP_433552.1	COG0386
YP_433553.1	COG1846
YP_433554.1	COG0642
YP_433556.1	COG2062
YP_433557.1	COG1744
YP_433558.1	COG3845
YP_433559.1	COG4603
YP_433560.1	COG1079
YP_433561.1	COG0524
YP_433562.1	COG1957
YP_433563.1	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides
YP_433571.1	TIGRFAMsMatches:TIGR01346
YP_433572.1	COG0583
YP_433573.1	COG0664
YP_433576.1	COG2114; some protein contain HAMP domain
YP_433577.1	COG0454
YP_433578.1	COG2850
YP_433579.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_433580.1	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis
YP_433581.1	TIGRFAMsMatches:TIGR00420
YP_433582.1	COG0494
YP_433583.1	COG1187
YP_433584.1	TIGRFAMsMatches:TIGR00183
YP_433585.1	COG1278
YP_433586.2	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_433587.1	COG0542
YP_433588.1	TIGRFAMsMatches:TIGR00008
YP_433590.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_433591.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_433592.1	TIGRFAMsMatches:TIGR01292
YP_433593.1	COG0714
YP_433594.1	COG0388
YP_433595.1	COG2957
YP_433598.1	COG4591
YP_433599.1	COG1136
YP_433600.1	TIGRFAMsMatches:TIGR00874
YP_433601.1	COG0042
YP_433602.1	COG3293
YP_433603.1	COG3293
YP_433609.1	COG0834
YP_433614.1	COG2199
YP_433615.1	COG3812
YP_433616.1	TIGRFAMsMatches:TIGR00493
YP_433618.1	COG1555
YP_433622.1	COG1596
YP_433623.1	COG3206
YP_433624.1	TIGRFAMsMatches:TIGR01536
YP_433625.1	COG0500
YP_433627.1	COG2192
YP_433630.1	COG0438
YP_433631.1	COG0463
YP_433632.1	COG2227
YP_433633.1	COG0438
YP_433634.1	TIGRFAMsMatches:TIGR01536
YP_433635.1	TIGRFAMsMatches:TIGR01536
YP_433636.1	COG0438
YP_433637.1	COG0472
YP_433638.1	COG0451
YP_433639.1	COG0332
YP_433640.1	COG0472
YP_433641.1	COG1086
YP_433642.1	TIGRFAMsMatches:TIGR01181
YP_433643.1	TIGRFAMsMatches:TIGR01207
YP_433644.1	TIGRFAMsMatches:TIGR01221
YP_433645.1	TIGRFAMsMatches:TIGR01214
YP_433646.1	COG1216
YP_433647.1	TIGRFAMsMatches:TIGR01479
YP_433648.1	COG4531
YP_433649.1	COG3215
YP_433650.1	COG0084
YP_433651.1	COG0596
YP_433653.1	COG1752
YP_433654.1	involved in methylation of ribosomal protein L3
YP_433655.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_433656.1	COG0477
YP_433657.1	COG1220
YP_433658.1	COG3243
YP_433659.1	COG0583
YP_433661.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_433662.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_433663.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_433664.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_433666.1	TIGRFAMsMatches:TIGR00071
YP_433667.1	COG0135
YP_433668.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_433669.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_433670.1	TIGRFAMsMatches:TIGR00515
YP_433671.1	COG0285
YP_433672.1	uncharacterized protein conserved in bacteria COG3147
YP_433673.1	COG1286
YP_433674.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_433675.1	TIGRFAMsMatches:TIGR01325
YP_433677.1	DNA segregation ATPase FtsK/SpoIIIE and related protein; COG1674
YP_433678.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_433679.1	COG2256
YP_433680.1	COG0239
YP_433681.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_433682.1	COG0007
YP_433684.1	TIGRFAMsMatches:TIGR02142
YP_433685.1	TIGRFAMsMatches:TIGR02141
YP_433686.1	TIGRFAMsMatches:TIGR01256
YP_433688.1	COG2005
YP_433689.1	COG3456
YP_433690.1	COG0840
YP_433691.1	COG2206
YP_433694.1	COG0745
YP_433697.1	COG2931
YP_433698.1	COG1609
YP_433699.1	COG1879
YP_433700.1	COG1129
YP_433701.1	COG1172
YP_433702.1	COG1063
YP_433703.1	COG1070
YP_433704.1	TIGRFAMsMatches:TIGR00874
YP_433706.1	COG1858
YP_433708.1	COG4935
YP_433709.1	COG3227
YP_433710.1	COG0633
YP_433711.1	COG0583
YP_433712.1	COG0697
YP_433713.1	COG1522
YP_433717.1	DNA modification methylase; COG0863
YP_433719.1	COG1033
YP_433723.1	COG0778
YP_433724.1	COG1090
YP_433725.1	COG1024
YP_433726.1	COG3396
YP_433727.1	flavoprotein; COG0644
YP_433728.1	COG0318
YP_433730.1	COG0491
YP_433731.1	COG0451
YP_433734.1	COG0443
YP_433736.1	COG1653
YP_433737.1	COG0659
YP_433738.1	COG0589
YP_433739.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_433743.1	COG0596
YP_433744.1	COG0623
YP_433746.1	COG4172
YP_433747.1	COG4239
YP_433748.1	COG4174
YP_433749.1	COG4166
YP_433750.1	COG1639
YP_433751.1	COG0741
YP_433752.1	COG0491
YP_433753.1	COG0500
YP_433754.1	COG0328
YP_433755.1	TIGRFAMsMatches:TIGR01406
YP_433756.1	involved in regulation of intracellular pH under alkaline conditions
YP_433757.1	COG0840
YP_433758.1	COG0841
YP_433759.1	COG3255
YP_433760.1	SohB; periplasmic protein; member of the peptidase S49 family
YP_433761.1	COG0604
YP_433762.1	COG4651
YP_433763.1	COG3749
YP_433764.1	COG0155
YP_433768.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_433769.1	COG0694
YP_433770.1	COG0547
YP_433771.1	COG2920
YP_433772.1	COG2168
YP_433773.1	COG2923
YP_433774.1	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs
YP_433775.1	COG0670
YP_433777.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_433778.1	COG0673
YP_433779.1	COG2205
YP_433780.1	COG0168
YP_433783.1	COG0642
YP_433784.1	COG0784
YP_433785.1	COG5001
YP_433786.1	COG4771
YP_433787.1	COG1028
YP_433789.1	Citrate synthase; COG0372
YP_433790.1	acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase; COG0028
YP_433791.1	COG3293
YP_433796.1	COG0834
YP_433797.1	COG0317
YP_433798.1	COG2801
YP_433799.1	COG2801
YP_433800.1	COG2963
YP_433802.1	COG2931
YP_433805.1	COG0840
YP_433807.1	COG1477
YP_433814.1	COG0526
YP_433819.1	COG1729
YP_433820.1	COG0457
YP_433822.1	COG2951
YP_433825.1	COG1189
YP_433826.1	COG0456
YP_433827.1	COG0189
YP_433828.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_433829.1	COG0718
YP_433830.1	TIGRFAMsMatches:TIGR00615
YP_433831.1	TIGRFAMsMatches:TIGR01388
YP_433832.1	COG3100
YP_433833.1	COG2983
YP_433835.1	COG2304
YP_433836.1	COG0121
YP_433837.1	TIGRFAMsMatches:TIGR01139
YP_433838.1	COG0714
YP_433839.1	COG3825
YP_433841.1	COG0457
YP_433842.1	COG1729
YP_433843.1	COG0457
YP_433845.1	COG0811
YP_433847.1	similar to adventurous gliding motility protein S (AglS); COG0848
YP_433849.1	COG2161
YP_433856.1	COG2030
YP_433857.1	COG2267
YP_433860.1	activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids
YP_433862.1	TIGRFAMsMatches:TIGR01967
YP_433863.1	catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_433864.1	COG2853
YP_433865.1	COG1752
YP_433866.1	COG3267
YP_433868.1	helicase involved in DNA repair and perhaps also replication
YP_433869.1	COG2909
YP_433870.1	COG0730
YP_433871.1	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation
YP_433872.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_433875.1	catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity
YP_433876.1	TIGRFAMsMatches:TIGR00553
YP_433881.1	COG1721
YP_433882.1	COG1305
YP_433883.1	ATPase involved in DNA replication; COG0470
YP_433885.1	COG0705; similar to Drosophila rhomboid
YP_433886.2	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_433889.1	COG0004
YP_433890.1	COG1309
YP_433891.1	COG1376
YP_433892.1	COG1472
YP_433893.1	COG0668
YP_433894.1	Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides
YP_433896.1	TIGRFAMsMatches:TIGR00580
YP_433897.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent
YP_433898.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_433899.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_433900.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_433901.1	Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm
YP_433902.1	Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.
YP_433903.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_433904.1	COG1477
YP_433905.1	COG2991
YP_433907.1	catalyzes the conversion of NADPH to NADH
YP_433908.1	COG0584
YP_433909.1	COG2876
YP_433910.1	COG3216
YP_433911.1	TIGRFAMsMatches:TIGR00361
YP_433912.1	COG0811
YP_433913.1	COG0848
YP_433914.1	TIGRFAMsMatches:TIGR02203
YP_433915.1	TIGRFAMsMatches:TIGR00682
YP_433916.1	COG2835
YP_433917.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_433918.1	COG0394
YP_433919.1	TIGRFAMsMatches:TIGR00179
YP_433920.1	COG1802
YP_433921.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_433922.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_433923.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_433924.1	COG0677
YP_433925.1	COG2148
YP_433926.1	COG1596
YP_433927.1	COG3206
YP_433928.1	ATPase involved in chromosome partitioning; COG0489
YP_433930.1	COG0726
YP_433933.1	COG1020
YP_433934.1	COG0438
YP_433935.1	COG3919
YP_433936.1	COG0394
YP_433937.1	COG3307
YP_433938.1	COG0438
YP_433939.1	COG2244
YP_433941.1	uncharacterized conserved protein; COG2327
YP_433942.1	COG1835
YP_433943.1	COG0438
YP_433944.1	COG1541
YP_433945.1	COG0110
YP_433947.1	COG0438
YP_433948.1	COG0529
YP_433949.1	COG0438
YP_433950.1	COG0726
YP_433953.1	COG0471
YP_433955.1	COG1215
YP_433956.1	COG0399
YP_433957.1	COG0457
YP_433958.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_433959.1	COG0642
YP_433961.1	COG0451
YP_433962.1	COG0204
YP_433965.1	COG3937
YP_433966.1	COG1309
YP_433967.1	removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction
YP_433968.1	COG3272
YP_433969.1	COG1078
YP_433970.1	COG2208
YP_433971.1	COG1366
YP_433972.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_433973.1	TIGRFAMsMatches:TIGR00249
YP_433974.1	COG0520
YP_433975.1	COG0517
YP_433977.1	COG1145
YP_433979.1	COG4572
YP_433980.1	COG3816
YP_433982.1	COG1305
YP_433984.1	COG3209
YP_433985.1	COG2931
YP_433986.1	COG2199
YP_433990.1	COG0714
YP_433991.1	COG0631
YP_433992.1	COG0515
YP_433995.1	Periplasmic protease; COG0793
YP_433998.1	COG0441
YP_434000.1	COG1522
YP_434001.1	COG0697
YP_434002.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_434003.1	COG0523
YP_434004.1	COG0834
YP_434005.1	COG0687
YP_434006.1	COG0330
YP_434007.1	COG4615
YP_434010.1	COG2850
YP_434011.1	COG2192
YP_434016.1	COG1203
YP_434019.1	COG3649
YP_434020.1	COG1468
YP_434021.1	TIGRFAMsMatches:TIGR00287
YP_434022.1	COG1343
YP_434027.1	COG0500
YP_434028.1	COG1881
YP_434029.1	COG0412
YP_434030.1	COG2059
YP_434039.1	COG3335
YP_434047.1	COG0477
YP_434048.1	COG1960
YP_434049.1	COG1021
YP_434050.1	COG1804
YP_434051.1	COG1977
YP_434052.1	COG1310
YP_434053.1	COG0476
YP_434054.1	COG0582
YP_434057.1	COG0270
YP_434061.1	DNA polymerase III, epsilon subunit and related 3'-5' exonucleases COG0847
YP_434076.1	COG2197
YP_434081.1	COG4643
YP_434086.1	COG3023
YP_434092.1	COG4220
YP_434093.1	COG5525
YP_434094.1	TIGRFAMsMatches:TIGR01539
YP_434095.1	COG0616
YP_434097.1	COG1523
YP_434104.1	COG0840
YP_434114.1	COG1284
YP_434122.1	COG1879
YP_434123.1	COG0834
YP_434125.1	COG0477
YP_434126.1	COG2207
YP_434127.1	COG1309
YP_434134.1	COG4430
YP_434135.1	COG1670
YP_434136.1	COG1108
YP_434137.1	COG1121
YP_434139.1	COG4531
YP_434140.1	COG2319
YP_434142.1	COG0803
YP_434143.1	COG1108
YP_434144.1	COG0735
YP_434153.1	COG1020
YP_434154.1	COG1032
YP_434155.1	COG1020
YP_434156.1	COG1020
YP_434157.1	COG1020
YP_434158.1	COG1020
YP_434159.1	COG3321
YP_434160.1	COG1020
YP_434161.1	COG3321
YP_434162.1	COG3321
YP_434164.1	COG3597
YP_434166.1	COG2199
YP_434172.1	catalyzes the formation of pyruvate from serine
YP_434173.1	COG0583
YP_434174.1	COG3434
YP_434175.1	COG1404
YP_434178.1	COG4539
YP_434179.1	COG2273
YP_434180.1	COG0625
YP_434182.1	COG2227
YP_434185.1	COG1670
YP_434192.1	COG0024
YP_434194.1	unwinds double stranded DNA
YP_434195.1	COG3545
YP_434198.1	COG2207
YP_434199.1	COG4188
YP_434204.1	COG3232
YP_434208.1	COG2234
YP_434210.1	COG1538
YP_434211.1	COG0845
YP_434212.1	COG3696
YP_434213.1	COG4454
YP_434215.1	COG2010
YP_434216.1	COG1262
YP_434217.1	COG1051
YP_434218.1	COG4461
YP_434221.1	COG3576
YP_434224.1	COG3391
YP_434226.1	COG5640
YP_434227.1	COG0664
YP_434229.1	COG2847
YP_434233.1	COG2340
YP_434234.1	COG3708
YP_434235.1	catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme
YP_434236.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_434242.1	COG5350
YP_434244.1	COG0596
YP_434245.1	COG2207
YP_434247.1	COG0834
YP_434249.1	COG0451
YP_434251.1	COG0477
YP_434252.1	COG0693
YP_434256.1	COG0739
YP_434257.1	COG0583
YP_434259.1	COG2267
YP_434261.1	COG1943
YP_434262.1	COG0546
YP_434264.1	TIGRFAMsMatches:TIGR00383
YP_434265.1	TIGRFAMsMatches:TIGR00126
YP_434266.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_434267.1	TIGRFAMsMatches:TIGR00107
YP_434268.1	COG0583
YP_434270.1	COG0406
YP_434271.1	COG4341
YP_434272.1	COG0560
YP_434273.1	COG0665
YP_434274.1	COG0697
YP_434275.1	catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate
YP_434276.1	COG0075
YP_434277.1	COG1178
YP_434278.1	COG3842
YP_434279.1	COG1840
YP_434280.1	COG2188
YP_434283.1	COG4973
YP_434286.1	TIGRFAMsMatches:TIGR01312
YP_434287.1	COG2202
YP_434292.1	COG1051
YP_434294.1	COG3488
YP_434296.1	COG0454
YP_434298.1	COG2202
YP_434301.1	COG1073
YP_434305.1	COG1653
YP_434306.1	COG1653
YP_434309.1	COG0583
YP_434310.1	COG2249
YP_434311.1	COG0006
YP_434312.1	COG4608
YP_434313.1	COG0444
YP_434314.1	COG1173
YP_434315.1	COG0601
YP_434316.1	COG4166
YP_434322.1	COG2020
YP_434323.1	COG0156
YP_434324.1	COG3687
YP_434325.1	COG4380
YP_434326.1	COG4259
YP_434327.1	COG1462
YP_434328.1	flavoprotein; COG0644
YP_434330.1	COG4886
YP_434332.1	COG4886
YP_434334.1	COG1398
YP_434335.1	COG1366
YP_434336.1	COG3706
YP_434347.1	COG3791
YP_434350.1	COG1012
YP_434351.1	TIGRFAMsMatches:TIGR00674
YP_434352.1	COG3866
YP_434354.1	COG0665
YP_434355.1	COG3938
YP_434356.1	COG1802
YP_434358.1	COG2207
YP_434363.1	COG2207
YP_434369.1	COG0515
YP_434370.1	COG2207
YP_434371.1	COG1171
YP_434376.1	COG0488
YP_434377.1	COG4675
YP_434378.1	COG4675
YP_434380.1	COG4625
YP_434381.1	COG2931
YP_434382.1	COG2801
YP_434384.1	COG1309
YP_434385.1	COG0625
YP_434389.1	COG0640
YP_434390.1	COG3832
YP_434391.1	COG3852
YP_434393.1	TIGRFAMsMatches:TIGR00198
YP_434398.1	TIGRFAMsMatches:TIGR00178
YP_434399.1	COG0477
YP_434400.1	COG1566
YP_434401.1	COG1846
YP_434403.1	COG5285
YP_434404.1	COG1112
YP_434409.1	COG5343
YP_434410.1	COG1595
YP_434415.1	COG4315
YP_434419.1	COG1309
YP_434420.1	COG2350
YP_434421.1	COG2818
YP_434422.1	COG0583
YP_434423.1	COG0500
YP_434425.1	Type II secretory pathway, component PulD COG1450
YP_434432.1	COG4669
YP_434434.1	COG1317
YP_434435.1	COG3209
YP_434437.1	COG3209
YP_434443.1	COG3335
YP_434444.1	COG4792
YP_434445.1	COG4791
YP_434446.1	COG4794
YP_434447.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_434448.1	COG1886
YP_434451.1	COG1157
YP_434452.1	COG1106
YP_434453.1	COG1943
YP_434454.1	COG4101
YP_434455.1	COG4789
YP_434462.1	COG0457
YP_434468.1	COG3293
YP_434469.1	COG3547
YP_434470.1	Transposase and inactivated derivatives COG3547
YP_434474.1	COG3293
YP_434476.1	COG1653
YP_434477.1	COG1175
YP_434478.1	COG0395
YP_434479.1	COG3839
YP_434480.1	COG1234
YP_434481.1	COG0483
YP_434482.1	COG1609
YP_434485.1	COG0457
YP_434488.1	COG4315
YP_434490.1	COG2375
YP_434491.1	COG1846
YP_434492.1	COG0834
YP_434493.1	COG2801
YP_434495.1	COG0160
YP_434496.1	COG0714
YP_434497.1	COG3831
YP_434500.1	COG3791
YP_434502.1	COG0583
YP_434503.1	COG0625
YP_434504.1	COG3576
YP_434506.1	COG2916
YP_434511.1	COG1167
YP_434512.1	COG1182
YP_434513.1	COG0526
YP_434514.1	COG4232
YP_434516.1	COG2207
YP_434517.1	COG1742
YP_434518.1	COG1309
YP_434519.1	COG2220
YP_434520.1	COG0702
YP_434527.1	COG0583
YP_434529.1	COG2823
YP_434530.1	COG1305
YP_434531.1	COG1305
YP_434534.1	COG1776
YP_434535.1	COG3706
YP_434541.1	COG3062
YP_434542.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_434543.1	COG3043
YP_434544.1	COG3005
YP_434545.1	COG0840
YP_434546.1	COG2114; some protein contain HAMP domain
YP_434551.1	COG3210
YP_434553.1	COG4995
YP_434554.1	COG2831
YP_434559.1	COG4314
YP_434560.1	COG1277
YP_434561.1	COG1131
YP_434562.1	COG3420
YP_434563.1	reduces nitrous oxide to nitrogen
YP_434564.1	COG3901
YP_434565.1	COG1432
YP_434568.1	COG1733
YP_434569.1	COG0596
YP_434570.1	COG3865
YP_434575.1	COG3293
YP_434579.1	COG0824
YP_434580.1	COG0789
YP_434581.1	COG2249
YP_434582.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_434583.1	COG1250
YP_434584.1	COG0705; similar to Drosophila rhomboid
YP_434585.1	COG2148
YP_434587.1	COG1404
YP_434588.1	COG0464
YP_434590.1	COG5017
YP_434592.1	COG0438
YP_434594.1	COG0438
YP_434599.1	COG0489
YP_434600.1	COG3206
YP_434601.1	COG1596
YP_434602.1	COG0760
YP_434611.1	COG1250
YP_434613.1	COG3208
YP_434614.1	COG2850
YP_434615.1	COG3321
YP_434616.1	COG1020
YP_434617.1	COG1020
YP_434618.1	COG4615
YP_434619.1	COG3321
YP_434620.1	COG1020
YP_434621.1	COG0331
YP_434622.1	COG1020
YP_434623.1	COG1020
YP_434624.1	COG1960
YP_434625.1	COG0236
YP_434627.1	COG0614
YP_434628.1	COG0609
YP_434629.1	COG4779
YP_434630.1	COG1120
YP_434631.1	COG4759
YP_434632.1	COG1629
YP_434634.1	COG0840
YP_434635.1	COG1201
YP_434636.1	COG0840
YP_434641.1	COG4637
YP_434642.1	COG0515
YP_434643.1	COG3311
YP_434645.1	COG0834
YP_434646.1	COG0834
YP_434654.1	COG0477
YP_434655.1	COG3321
YP_434656.1	COG3321
YP_434657.1	COG1335
YP_434658.1	COG2907
YP_434659.1	COG0331
YP_434660.1	COG3321
YP_434661.1	COG3321
YP_434662.1	COG3321
YP_434665.1	COG0604
YP_434666.1	COG1733
YP_434671.1	COG3263
YP_434672.1	COG0076
YP_434673.1	COG2199
YP_434674.1	COG2199
YP_434675.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_434676.1	COG4886
YP_434682.1	COG0583
YP_434684.1	COG0845
YP_434685.1	COG0841
YP_434686.1	COG2032
YP_434689.1	COG0834
YP_434691.1	COG0834
YP_434692.1	COG0348
YP_434693.1	COG1167
YP_434694.1	COG2301
YP_434695.1	COG0454
YP_434696.1	COG1902
YP_434697.1	COG1959
YP_434699.1	COG3501
YP_434701.1	COG3209
YP_434703.1	COG1309
YP_434704.1	COG2220
YP_434707.1	COG4663
YP_434708.1	COG4665
YP_434709.1	COG4664
YP_434710.1	COG3265
YP_434711.1	COG1609
YP_434713.1	COG1479
YP_434714.1	COG4232
YP_434715.1	COG0526
YP_434731.1	COG2207
YP_434738.1	COG0526
YP_434740.1	COG1629
YP_434741.1	COG0834
YP_434751.1	COG2132
YP_434752.1	COG1846
YP_434753.1	COG0778
YP_434754.1	COG5002
YP_434755.1	COG0834
YP_434756.1	COG0834
YP_434757.1	COG3047
YP_434758.1	COG2885
YP_434761.1	COG4307
YP_434763.1	COG3120
YP_434764.1	COG0318
YP_434765.1	COG2124
YP_434766.1	COG2124
YP_434767.1	COG3321
YP_434768.1	COG2192
YP_434769.1	COG1696
YP_434771.1	COG0834
YP_434773.1	COG0551
YP_434777.1	COG0642
YP_434778.1	COG0745
YP_434783.1	COG0491
YP_434784.1	COG0583
YP_434785.1	COG5006
YP_434786.1	COG0535
YP_434787.1	COG0010
YP_434788.1	COG0840
YP_434789.1	COG1360
YP_434792.1	COG0553
YP_434793.1	COG3791
YP_434795.1	COG1680
YP_434796.1	TIGRFAMsMatches:TIGR00754
YP_434797.1	COG0730
YP_434798.1	COG0784
YP_434806.1	TIGRFAMsMatches:TIGR00652
YP_434809.1	COG2984
YP_434810.1	COG2984
YP_434811.1	COG0642
YP_434812.1	COG5001
YP_434813.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_434814.1	COG0443
YP_434815.1	COG0443
YP_434819.1	COG5453
YP_434823.1	COG0500
YP_434827.1	COG4247
YP_434828.1	COG4325
YP_434830.1	COG1409
YP_434833.1	COG2119
YP_434834.1	COG4305
YP_434839.1	COG4412
YP_434843.1	COG0697
YP_434844.1	COG1896
YP_434845.1	COG1230
YP_434846.1	TIGRFAMsMatches:TIGR02047
YP_434848.1	COG0515
YP_434849.1	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzyme COG0508
YP_434850.1	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit COG0022
YP_434851.1	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit COG1071
YP_434855.1	COG0697
YP_434856.1	COG0031
YP_434857.1	COG0019
YP_434859.1	COG0583
YP_434861.1	COG0530
YP_434862.1	COG3836
YP_434863.1	COG0642
YP_434864.1	COG3437
YP_434865.1	COG2201
YP_434866.1	COG1871
YP_434867.1	COG1352
YP_434868.1	COG0835
YP_434869.1	COG0840
YP_434871.1	COG0643
YP_434872.1	COG1366
YP_434873.1	COG0784
YP_434874.1	COG2200
YP_434875.1	COG0642
YP_434876.1	COG0596
YP_434878.1	COG0189
YP_434881.1	COG2239
YP_434885.1	COG1028
YP_434886.1	COG1733
YP_434904.1	COG3153
YP_434905.1	COG3811
YP_434906.1	COG0840
YP_434910.1	COG0834
YP_434911.1	COG0765
YP_434912.1	COG1126
YP_434913.1	COG2071
YP_434916.1	COG0845
YP_434917.1	COG0841
YP_434928.1	COG3209
YP_434932.1	COG3209
YP_434934.1	COG3209
YP_434937.1	COG3293
YP_434938.1	COG3209
YP_434941.1	COG3209
YP_434942.1	COG0187
YP_434944.1	COG1979
YP_434945.1	COG0841
YP_434946.1	COG0845
YP_434947.1	with FepCDG is involved in the transport of ferric enterobactin
YP_434948.1	protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters
YP_434949.1	with FepBCG is involved in the transport of ferric enterobactin
YP_434950.1	with FepBCD is involved in the transport of ferric enterobactin
YP_434951.1	COG1120
YP_434952.1	COG0625
YP_434953.1	COG2259
YP_434954.1	COG0583
YP_434960.1	COG1205
YP_434961.1	COG0553
YP_434962.1	COG1002
YP_434970.1	COG4188
YP_434972.1	YafO overproduction induces toxicity; it is believed to be the toxin of a toxin-antitoxin pair; unknown function
YP_434975.1	COG1020
YP_434976.1	COG3251
YP_434977.1	COG2382
YP_434978.1	COG1629
YP_434981.1	COG0494
YP_434982.1	COG0494
YP_434983.1	COG0346
YP_434984.1	COG1335
YP_434985.1	COG0583
YP_434986.1	COG1918
YP_434987.1	COG1918
YP_434988.1	TIGRFAMsMatches:TIGR00437
YP_434990.1	COG3239
YP_434991.1	COG1018
YP_434993.1	COG2236
YP_434998.1	COG2200
YP_434999.1	COG2201
YP_435000.1	COG0643
YP_435001.1	COG0840
YP_435002.1	COG0835
YP_435003.1	COG1352
YP_435004.1	COG0835
YP_435005.1	COG0546
YP_435007.1	COG0486
YP_435010.1	TIGRFAMsMatches:TIGR00528
YP_435011.1	TIGRFAMsMatches:TIGR00720
YP_435012.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_435013.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_435014.1	TIGRFAMsMatches:TIGR00527
YP_435015.1	COG0583
YP_435017.1	COG2200
YP_435019.1	COG0457
YP_435023.1	COG2207
YP_435025.1	COG0488
YP_435026.1	COG0500
YP_435033.1	COG0110
YP_435034.1	COG3832
YP_435045.1	COG1404
YP_435049.1	COG0666
YP_435050.1	COG0583
YP_435052.1	COG0666
YP_435053.1	COG2931
YP_435057.1	COG1280
YP_435059.1	COG0583
YP_435060.1	catalyzes the interconversion of chorismate to prephenate
YP_435061.1	COG2730
YP_435068.1	COG1629
YP_435069.1	COG2984
YP_435070.1	COG0642
YP_435071.1	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzyme COG1249
YP_435072.1	COG0454
YP_435074.1	COG3149
YP_435075.1	COG3297
YP_435076.1	COG3156
YP_435077.1	TIGRFAMsMatches:TIGR01711
YP_435078.1	TIGRFAMsMatches:TIGR01707
YP_435079.1	TIGRFAMsMatches:TIGR01708
YP_435080.1	TIGRFAMsMatches:TIGR01710
YP_435081.1	TIGRFAMsMatches:TIGR02120
YP_435082.1	COG2804
YP_435084.1	COG3672
YP_435086.1	COG0789
YP_435088.1	COG1960
YP_435089.1	COG4799
YP_435090.1	COG1024
YP_435091.1	COG4770
YP_435092.1	COG0119
YP_435093.1	AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase
YP_435094.1	COG2025
YP_435095.1	COG2086
YP_435097.1	flavoprotein; COG0644
YP_435100.1	COG3344
YP_435102.1	COG3344
YP_435106.1	COG0438
YP_435108.1	COG0398
YP_435110.1	COG2413
YP_435111.1	COG0617
YP_435114.1	COG5622
YP_435117.1	GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells
YP_435121.1	COG0451
YP_435123.1	COG4704
YP_435125.1	COG0668
YP_435126.1	COG2207
YP_435127.1	COG0667
YP_435128.1	COG0454
YP_435131.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_435132.1	COG4273
YP_435133.1	COG1396
YP_435134.1	COG1115
YP_435141.1	COG2223
YP_435142.1	COG2223
YP_435143.1	COG0515
YP_435144.1	COG0834
YP_435147.1	COG0666
YP_435148.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_435149.1	COG0760
YP_435150.1	TIGRFAMsMatches:TIGR00351
YP_435151.1	TIGRFAMsMatches:TIGR00684
YP_435152.1	TIGRFAMsMatches:TIGR01660
YP_435153.1	TIGRFAMsMatches:TIGR01580
YP_435154.1	COG3850
YP_435157.1	COG0175
YP_435159.1	COG3336
YP_435160.1	COG1999
YP_435161.1	COG2223
YP_435162.1	two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase
YP_435164.1	COG0053
YP_435165.1	COG0642
YP_435166.1	COG0784
YP_435167.1	COG3437
YP_435168.1	COG0642
YP_435169.1	COG1639
YP_435170.1	COG0784
YP_435172.1	COG0841
YP_435173.1	COG0845
YP_435176.1	COG5001
YP_435179.1	COG3930
YP_435180.1	COG0388
YP_435181.1	COG2197
YP_435182.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_435183.1	TIGRFAMsMatches:TIGR00560
YP_435185.1	COG3034
YP_435186.1	COG0465
YP_435187.1	COG0071
YP_435192.1	COG3070
YP_435193.1	COG0454
YP_435194.1	COG0607
YP_435195.1	COG4977
YP_435197.1	COG0834
YP_435200.1	COG0834
YP_435202.1	COG3209
YP_435204.1	COG0457
YP_435205.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_435207.1	Flagellar motor switch/type III secretory pathway protein; COG1886
YP_435209.1	COG1749
YP_435210.1	COG1843
YP_435213.1	Flagellar biosynthesis/type III secretory pathway ATPase; COG1157
YP_435214.1	Flagellar biosynthesis/type III secretory pathway protein; COG1317
YP_435216.1	TIGRFAMsMatches:TIGR00206
YP_435217.1	TIGRFAMsMatches:TIGR00205
YP_435218.1	TIGRFAMsMatches:TIGR01395
YP_435219.1	COG1815
YP_435220.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_435221.1	COG2063
YP_435222.1	COG1261
YP_435223.1	COG4786
YP_435224.1	COG4786
YP_435225.1	COG1298
YP_435226.1	COG1377
YP_435227.1	COG1684
YP_435228.1	TIGRFAMsMatches:TIGR01402
YP_435229.1	COG0457
YP_435232.1	COG3335
YP_435233.1	COG3713
YP_435234.1	COG0476
YP_435235.1	COG1185
YP_435237.1	COG0647
YP_435238.1	COG3023
YP_435241.1	COG4637
YP_435243.1	COG5006
YP_435244.1	COG3236
YP_435252.1	COG0288
YP_435253.1	COG0745
YP_435254.1	COG0642
YP_435255.1	COG0793
YP_435259.1	COG0272
YP_435262.1	COG2081
YP_435263.1	COG4943
YP_435264.1	COG0642
YP_435265.1	COG0745
YP_435266.1	COG0841
YP_435267.1	COG0845
YP_435268.1	COG1538
YP_435270.1	COG1397
YP_435277.1	COG0643
YP_435279.1	COG2199
YP_435283.1	COG2340
YP_435284.1	COG0366
YP_435286.1	COG0366
YP_435287.1	COG0477
YP_435288.1	COG5343
YP_435289.1	COG1595
YP_435290.1	COG4315
YP_435295.1	COG0834
YP_435296.1	COG1201
YP_435299.1	COG1696
YP_435300.1	TIGRFAMsMatches:TIGR02018
YP_435301.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_435302.1	TIGRFAMsMatches:TIGR01227
YP_435303.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_435304.1	TIGRFAMsMatches:TIGR01225
YP_435305.1	COG0834
YP_435306.1	COG0834
YP_435307.1	COG0790
YP_435308.1	COG0491
YP_435309.1	COG0640
YP_435310.1	COG3453
YP_435311.1	COG0730
YP_435312.1	COG3227
YP_435313.1	COG0693
YP_435314.1	COG4977
YP_435315.1	COG1397
YP_435316.1	COG3228
YP_435321.1	COG4625
YP_435323.1	COG2130
YP_435324.1	COG0583
YP_435325.1	COG0578
YP_435328.1	COG1234
YP_435332.1	COG3453
YP_435336.1	COG1653
YP_435338.1	COG1670
YP_435341.1	COG1280
YP_435345.1	COG2207
YP_435346.1	COG0342
YP_435349.1	COG0500
YP_435352.1	COG0695
YP_435354.1	COG0477
YP_435355.1	COG2346
YP_435356.1	COG5002
YP_435368.1	COG0784
YP_435369.1	COG5001
YP_435370.1	COG4251
YP_435371.1	COG2936
YP_435372.1	COG4625
YP_435373.1	COG5002
YP_435374.1	COG0515
YP_435376.1	COG0790
YP_435378.1	COG3515
YP_435379.1	COG3516
YP_435380.1	COG3517
YP_435381.1	COG3517
YP_435382.1	COG3518
YP_435383.1	COG3519
YP_435384.1	COG3520
YP_435385.1	COG0542
YP_435386.1	COG1943
YP_435387.1	COG0346
YP_435388.1	COG0583
YP_435389.1	COG1359
YP_435391.1	COG0251
YP_435392.1	COG5380
YP_435393.1	COG1075
YP_435396.1	COG0784
YP_435398.1	COG0784
YP_435399.1	COG0642
YP_435401.1	COG4771
YP_435402.1	COG2200
YP_435403.1	COG4339
YP_435405.1	COG4663
YP_435406.1	COG4665
YP_435407.1	COG4664
YP_435408.1	COG4670
YP_435409.1	acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase; COG0028
YP_435410.1	COG3501
YP_435412.1	COG5351
YP_435414.1	COG0304
YP_435426.1	COG3157
YP_435428.1	COG0631
YP_435429.1	COG3913
YP_435430.1	COG3523
YP_435431.1	COG3455
YP_435432.1	COG3522
YP_435433.1	COG3521
YP_435434.1	COG3456
YP_435435.1	COG0784
YP_435437.1	COG0784
YP_435438.1	COG0642
YP_435439.1	COG3318
YP_435440.1	Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides
YP_435441.1	COG0366
YP_435442.1	functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase
YP_435443.1	COG2885
YP_435444.1	COG0446
YP_435446.1	COG1396
YP_435449.1	COG5651
YP_435451.1	COG0534
YP_435452.1	COG0583
YP_435453.1	Nucleotidyltransferase/DNA polymerase involved in DNA repair; COG0389
YP_435456.1	COG0840
YP_435460.1	COG0834
YP_435461.1	COG0834
YP_435463.1	COG3791
YP_435464.1	COG1073
YP_435465.1	COG0642
YP_435469.1	COG0745
YP_435470.1	COG3000
YP_435473.1	COG1628
YP_435476.1	COG0454
YP_435478.1	COG0739
YP_435479.1	COG4122
YP_435480.1	COG2072
YP_435481.1	COG0604
YP_435484.1	COG0745
YP_435485.1	COG0642
YP_435486.1	COG0182
YP_435487.1	Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline
YP_435488.1	Involved in ubiquinone biosynthesis
YP_435489.1	COG0546
YP_435490.1	COG1028
YP_435491.1	COG4446
YP_435492.1	COG4235
YP_435493.1	uncharacterized protein involved in biosynthesis of c-type cytochromes COG3088
YP_435494.1	Thiol-disulfide isomerase and thioredoxins COG0526
YP_435495.1	TIGRFAMsMatches:TIGR00353
YP_435496.1	COG2332
YP_435497.1	COG3114
YP_435498.1	COG0755
YP_435499.1	TIGRFAMsMatches:TIGR01190
YP_435500.1	ATP-binding protein; required for proper cytochrome c maturation
YP_435502.1	COG2257
YP_435503.1	COG3492
YP_435504.1	COG0783; oxidative damage protectant
YP_435506.1	COG3264
YP_435509.1	COG0834
YP_435511.1	COG2823
YP_435513.1	COG2989
YP_435514.1	COG1409
YP_435515.1	COG1597
YP_435518.1	COG1018
YP_435519.1	COG0583
YP_435520.1	COG1670
YP_435533.1	COG0491
YP_435534.1	COG0760
YP_435535.1	COG1132
YP_435536.1	COG2832
YP_435537.1	COG2873
YP_435538.1	COG4548
YP_435539.1	COG3256
YP_435540.1	COG2010
YP_435543.1	COG0714
YP_435544.1	COG2863
YP_435545.1	COG2010
YP_435546.1	COG2010
YP_435547.1	COG3391
YP_435548.1	COG1522
YP_435549.1	COG1522
YP_435550.1	COG1522
YP_435551.1	COG1522
YP_435552.1	COG0535
YP_435553.1	COG2010
YP_435555.1	COG0662
YP_435561.1	COG3335
YP_435562.1	COG1403
YP_435566.1	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
YP_435567.1	COG0596
YP_435573.1	COG3434
YP_435575.1	COG0084
YP_435578.1	COG5001
YP_435579.1	TIGRFAMsMatches:TIGR00016
YP_435580.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_435581.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_435582.1	COG1520
YP_435583.1	COG2976
YP_435584.1	TIGRFAMsMatches:TIGR00442
YP_435585.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_435586.1	COG1426
YP_435587.1	COG3063
YP_435588.1	COG0820
YP_435589.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_435590.1	COG1104
YP_435591.1	TIGRFAMsMatches:TIGR02010
YP_435592.1	TIGRFAMsMatches:TIGR01172
YP_435593.1	COG0565
YP_435594.1	COG0483
YP_435595.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_435596.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_435597.1	TIGRFAMsMatches:TIGR00739
YP_435598.1	TIGRFAMsMatches:TIGR00430
YP_435599.1	TIGRFAMsMatches:TIGR00113
YP_435601.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.
YP_435602.1	COG1256
YP_435603.1	COG1705
YP_435604.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_435605.1	COG2063
YP_435606.1	makes up the distal portion of the flagellar basal body rod
YP_435607.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_435608.1	COG1749
YP_435609.1	COG1843
YP_435610.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_435611.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_435612.1	COG0778
YP_435615.1	COG2114; some protein contain HAMP domain
YP_435616.1	COG0477
YP_435617.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_435618.1	COG0842
YP_435619.1	COG1131
YP_435620.1	COG0767
YP_435621.1	COG2206
YP_435624.1	COG1840
YP_435625.1	COG1178
YP_435626.1	COG1022
YP_435628.1	COG2984
YP_435629.1	COG4120
YP_435630.1	COG1101
YP_435631.1	COG3287
YP_435632.1	COG5001
YP_435633.1	COG1171
YP_435634.1	COG2897
YP_435640.1	COG0410
YP_435641.1	COG4674
YP_435642.1	COG4177
YP_435643.1	COG0559
YP_435644.1	COG0683
YP_435645.1	COG0829
YP_435646.1	COG0831
YP_435647.1	COG0832
YP_435648.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_435649.1	COG2371
YP_435650.1	COG0830
YP_435651.1	TIGRFAMsMatches:TIGR00101
YP_435652.1	Hydrogenase/urease accessory protein; COG2370
YP_435655.1	TIGRFAMsMatches:TIGR00558
YP_435658.1	GMP synthase - Glutamine amidotransferase domain; COG0518
YP_435660.1	COG1254
YP_435676.1	COG5614
YP_435678.1	TIGRFAMsMatches:TIGR01554
YP_435679.1	TIGRFAMsMatches:TIGR01543
YP_435680.1	TIGRFAMsMatches:TIGR01537
YP_435681.1	COG4626
YP_435682.1	TIGRFAMsMatches:TIGR01558
YP_435685.1	COG3668
YP_435686.1	COG3609
YP_435687.1	COG0454
YP_435688.1	COG1403
YP_435692.1	Retron-type reverse transcriptase; COG3344
YP_435697.1	COG3293
YP_435698.1	COG3293
YP_435699.1	COG0582
YP_435700.1	COG0789
YP_435701.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_435702.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_435703.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_435704.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_435705.1	TIGRFAMsMatches:TIGR00001
YP_435706.1	COG0290
YP_435707.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_435708.1	COG1192
YP_435709.1	COG2358
YP_435710.1	COG1033
YP_435711.1	COG4447
YP_435713.1	COG0308
YP_435715.1	COG3139
YP_435716.1	COG0705; similar to Drosophila rhomboid
YP_435717.1	COG0639
YP_435718.1	catalyzes the phosphorylation of NAD to NADP
YP_435720.1	COG2515
YP_435721.1	COG0419
YP_435722.1	COG1902
YP_435723.1	COG2207
YP_435724.1	TIGRFAMsMatches:TIGR00068
YP_435729.1	COG0041
YP_435730.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_435732.1	COG0605
YP_435733.1	COG5001
YP_435734.1	COG1704
YP_435735.1	COG0501
YP_435736.1	COG1450
YP_435737.1	TIGRFAMsMatches:TIGR01713
YP_435739.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_435740.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_435741.1	Protein affecting phage T7 exclusion by the F plasmid COG3030
YP_435742.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_435743.1	COG3695
YP_435744.1	COG0477
YP_435745.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_435746.1	COG3706
YP_435748.1	COG1070
YP_435749.1	COG0578
YP_435750.1	COG0277
YP_435751.1	COG2207
YP_435752.1	COG1396
YP_435756.1	COG1804
YP_435757.1	COG2207
YP_435758.1	COG3706
YP_435761.1	COG2227
YP_435764.1	COG0664
YP_435765.1	COG2114; some protein contain HAMP domain
YP_435766.1	COG0457
YP_435768.1	COG2233
YP_435769.1	COG0500
YP_435772.1	COG2169
YP_435773.1	COG0350
YP_435774.1	COG0697
YP_435775.1	COG0640
YP_435776.1	COG0346
YP_435777.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
YP_435778.1	COG0477
YP_435780.1	COG0840
YP_435783.1	COG0840
YP_435785.1	COG0564
YP_435787.1	putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport
YP_435788.1	COG1131
YP_435789.1	COG1277
YP_435792.1	COG0642
YP_435796.1	COG0515
YP_435799.1	COG0277
YP_435801.1	Sugar transferase involved in lipopolysaccharide synthesis COG2148
YP_435803.1	uncharacterized protein involved in exopolysaccharide biosynthesis COG3206
YP_435804.1	COG1596
YP_435806.1	Predicted UDP-glucose 6-dehydrogenase; COG1004
YP_435807.1	Teichoic acid biosynthesis protein; COG1922
YP_435808.1	COG0438
YP_435809.1	Lipid A core - O-antigen ligase and related enzyme COG3307
YP_435811.1	COG0463
YP_435813.1	COG1216
YP_435814.1	Exopolysaccharide biosynthesis protein; COG5039
YP_435815.1	COG2244
YP_435816.1	COG0463
YP_435821.1	COG1696
YP_435823.1	COG0583
YP_435824.1	COG1858
YP_435828.1	COG0513
YP_435829.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_435830.1	COG1278
YP_435834.1	COG0457
YP_435835.1	COG0639
YP_435836.1	COG0583
YP_435837.1	COG2855
YP_435839.1	COG2453
YP_435840.1	COG1352
YP_435842.1	COG0835
YP_435843.1	COG1261
YP_435844.1	COG2747
YP_435846.1	COG2804
YP_435847.1	COG3706
YP_435848.1	COG0652
YP_435849.1	COG4121
YP_435850.1	Predicted transcriptional regulator, contains C-terminal CBS domains COG2524
YP_435852.1	TIGRFAMsMatches:TIGR00575
YP_435853.1	TIGRFAMsMatches:TIGR02205
YP_435854.1	TIGRFAMsMatches:TIGR02168
YP_435856.1	COG1802
YP_435858.1	COG3706
YP_435859.1	COG1187
YP_435860.1	TIGRFAMsMatches:TIGR00281
YP_435861.1	COG1354
YP_435862.2	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_435863.1	COG0074
YP_435864.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_435865.1	E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_435866.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_435867.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_435868.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_435869.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_435870.1	COG2142
YP_435871.1	Succinate dehydrogenase/fumarate reductase, cytochrome b subunit COG2009
YP_435872.1	TIGRFAMsMatches:TIGR01798
YP_435873.1	COG2084
YP_435874.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_435876.1	FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_435877.1	includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_435880.1	COG0589
YP_435882.1	COG0488
YP_435883.1	COG3217
YP_435884.1	COG0835
YP_435885.1	COG3226
YP_435886.1	COG3803
YP_435887.1	COG2138
YP_435888.1	COG1090
YP_435889.1	COG1309
YP_435890.1	COG2050
YP_435892.1	TIGRFAMsMatches:TIGR00409
YP_435893.1	COG0741
YP_435894.1	COG0494
YP_435896.1	COG2902
YP_435899.1	COG0714
YP_435900.1	COG1721
YP_435901.1	COG1113
YP_435902.1	COG2304
YP_435903.1	COG2304
YP_435908.1	COG3360
YP_435909.1	COG2764
YP_435910.1	COG3525
YP_435911.1	COG2273
YP_435912.1	COG3325
YP_435915.1	COG1609
YP_435921.1	COG3022
YP_435922.1	COG0526
YP_435923.1	TIGRFAMsMatches:TIGR02188
YP_435924.1	COG0583
YP_435925.1	COG2259
YP_435926.1	COG3384
YP_435927.1	hemolysin III-like protein; COG1272
YP_435928.1	COG0840
YP_435929.1	COG0834
YP_435930.1	COG0834
YP_435931.1	COG2315
YP_435932.1	COG2272
YP_435933.1	Required for efficient pilin antigenic variation
YP_435934.1	COG1042
YP_435935.1	COG0123
YP_435936.1	TIGRFAMsMatches:TIGR00208
YP_435937.1	COG1345
YP_435938.1	COG1334
YP_435939.1	COG1344
YP_435940.1	COG2604
YP_435941.1	COG1344
YP_435942.1	COG0457
YP_435943.1	COG1045
YP_435944.1	COG0107
YP_435945.1	TIGRFAMsMatches:TIGR01855
YP_435946.1	COG0037
YP_435947.1	COG1028
YP_435950.1	catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate
YP_435951.1	COG1083
YP_435952.1	translation initiation factor 2B, gamma/epsilon subunit (eIF-2Bgamma/eIF-2Bepsilon); COG1208
YP_435953.1	COG0110
YP_435954.1	COG2089
YP_435955.1	COG0381
YP_435956.1	COG0399
YP_435957.1	COG0451
YP_435958.1	COG3222
YP_435959.1	COG0463
YP_435960.1	COG0535
YP_435961.1	COG0454
YP_435962.1	COG1670
YP_435965.1	COG1522
YP_435966.1	COG2340
YP_435967.1	COG0639
YP_435968.1	COG0840
YP_435969.1	COG3540
YP_435974.1	COG0818
YP_435975.1	COG0583
YP_435977.1	COG0477
YP_435978.1	4-oxalocrotonate tautomerase-like protein; COG1942
YP_435980.1	COG2866
YP_435985.1	COG1234
YP_435986.1	COG0583
YP_435988.1	COG2110; similar to the C-terminal domain of histone macroH2A1
YP_435989.1	COG0346
YP_435990.1	COG0673
YP_435991.1	COG0840
YP_435993.1	COG1881
YP_435997.1	COG2207
YP_435999.1	COG0834
YP_436000.1	COG2095
YP_436001.1	COG0655
YP_436003.1	COG0515
YP_436004.1	COG1595
YP_436006.1	COG0318
YP_436008.1	COG1408
YP_436009.1	COG0451
YP_436011.1	COG0209
YP_436012.1	COG0209
YP_436013.1	TIGRFAMsMatches:TIGR01099
YP_436015.1	COG0303
YP_436016.1	COG0521
YP_436017.1	COG0288
YP_436018.1	COG0451
YP_436020.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_436021.1	COG3317
YP_436022.1	TIGRFAMsMatches:TIGR00674
YP_436023.1	COG2716
YP_436024.1	COG1225
YP_436025.1	COG0628
YP_436026.1	COG0425
YP_436027.1	COG4783
YP_436028.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_436029.1	COG1729
YP_436030.1	COG2885
YP_436031.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_436033.1	COG0848
YP_436034.1	COG0811
YP_436035.1	COG0824
YP_436036.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_436037.1	TIGRFAMsMatches:TIGR00084
YP_436038.1	TIGRFAMsMatches:TIGR00228
YP_436040.1	COG0217
YP_436041.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_436042.1	COG2331
YP_436043.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_436045.1	COG0642
YP_436046.1	COG0784
YP_436047.1	COG0642
YP_436049.1	COG2206
YP_436050.1	negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis
YP_436051.1	COG0537
YP_436052.1	COG1004
YP_436053.1	TIGRFAMsMatches:TIGR01179
YP_436054.1	COG0590
YP_436055.1	COG1835
YP_436056.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_436057.1	TIGRFAMsMatches:TIGR01302
YP_436058.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_436059.1	COG2050
YP_436060.1	COG2050
YP_436061.1	COG3821
YP_436062.1	COG4784
YP_436063.1	COG0596
YP_436065.1	COG3127
YP_436066.1	COG4181
YP_436067.1	COG2755; similar to related esterases
YP_436069.1	COG0840
YP_436070.1	COG0589
YP_436072.1	catalyzes the removal of amino acids from the N termini of peptides
YP_436078.1	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA
YP_436079.1	COG3130
YP_436080.1	TIGRFAMsMatches:TIGR01036
YP_436082.1	COG0053
YP_436085.1	COG1322
YP_436086.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_436087.1	COG0436
YP_436089.1	COG0284
YP_436090.1	COG2956
YP_436092.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_436093.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_436094.1	TIGRFAMsMatches:TIGR00017
YP_436095.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_436096.1	COG0077
YP_436097.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_436098.1	TIGRFAMsMatches:TIGR01063
YP_436099.1	COG0517
YP_436100.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_436101.1	COG2154
YP_436102.1	COG1951
YP_436104.1	TIGRFAMsMatches:TIGR00032
YP_436105.1	COG2885
YP_436106.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_436107.1	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
YP_436108.1	COG0450
YP_436109.1	COG1028
YP_436110.1	TIGRFAMsMatches:TIGR01829
YP_436112.1	COG1025
YP_436113.1	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
YP_436115.1	COG0009
YP_436116.1	COG0271
YP_436118.1	COG0745
YP_436120.1	COG0642
YP_436123.1	Predicted carboxypeptidase; COG2866
YP_436124.1	COG0596
YP_436125.1	COG2885
YP_436126.1	COG5001
YP_436127.1	COG5008
YP_436130.1	COG0500
YP_436131.1	COG1205
YP_436134.1	COG2333
YP_436135.1	COG4096
YP_436136.1	COG0732
YP_436137.1	COG0286
YP_436139.1	COG3655
YP_436140.1	COG2801
YP_436141.1	COG0431
YP_436142.1	COG1028
YP_436143.1	COG2068
YP_436144.1	COG1529
YP_436145.1	COG2080
YP_436149.1	COG2840
YP_436150.1	COG2314
YP_436151.1	COG1451
YP_436152.1	COG0840
YP_436153.1	COG1020
YP_436155.1	COG1024
YP_436159.1	COG2905
YP_436160.1	DNA polymerase III, epsilon subunit and related 3'-5' exonucleases COG0847
YP_436161.1	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA
YP_436162.1	COG1454
YP_436164.1	COG1396
YP_436167.1	COG2872
YP_436169.1	COG1690
YP_436176.1	COG3123
YP_436178.1	COG4147
YP_436179.1	COG4327
YP_436180.1	COG0591
YP_436181.1	COG2197
YP_436182.1	TIGRFAMsMatches:TIGR02188
YP_436183.1	COG3320
YP_436184.1	COG1073
YP_436185.1	COG2226
YP_436186.1	COG2898
YP_436187.1	TIGRFAMsMatches:TIGR00067
YP_436188.1	COG2816
YP_436189.1	COG3225
YP_436190.1	COG1277
YP_436191.1	COG1131
YP_436192.1	PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA
YP_436193.1	COG2197
YP_436194.1	COG0642
YP_436196.1	Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) COG1080
YP_436198.1	COG3791
YP_436204.1	COG0457
YP_436207.1	COG4789
YP_436213.1	Flagellar biosynthesis/type III secretory pathway ATPase; COG1157
YP_436216.1	Flagellar motor switch/type III secretory pathway protein; COG1886
YP_436217.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_436218.1	COG4794
YP_436219.1	COG4791
YP_436220.1	COG4792
YP_436221.1	COG0834
YP_436222.1	COG0123
YP_436223.1	COG0454
YP_436225.1	COG1317
YP_436227.1	COG4669
YP_436236.1	COG1450
YP_436241.1	COG1595
YP_436243.1	COG3899
YP_436245.1	COG1309
YP_436246.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_436247.1	COG0477
YP_436248.1	COG1846
YP_436249.1	COG1522
YP_436251.2	TIGRFAMsMatches:TIGR00970
YP_436252.1	COG0402
YP_436253.1	COG3141
YP_436254.1	COG0642
YP_436255.1	COG4566
YP_436260.1	COG0474
YP_436265.1	COG0835
YP_436267.1	COG1192
YP_436268.1	Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility
YP_436269.1	homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC
YP_436270.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_436271.1	COG0643
YP_436272.1	COG3143
YP_436273.1	COG0784
YP_436274.1	DNA-directed RNA polymerase specialized sigma subunit COG1191
YP_436275.1	ATPase involved in chromosome partitioning; COG0455
YP_436276.1	COG1419
YP_436277.1	membrane protein involved in the flagellar export apparatus
YP_436278.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_436279.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_436280.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_436281.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_436282.1	COG3190
YP_436283.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_436284.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_436285.1	COG1580
YP_436286.1	COG3144
YP_436287.1	COG2198
YP_436288.1	COG3706
YP_436292.1	COG2882
YP_436293.1	involved in type III protein export during flagellum assembly
YP_436294.1	Flagellar biosynthesis/type III secretory pathway protein; COG1317
YP_436295.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_436296.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_436297.1	TIGRFAMsMatches:TIGR00205
YP_436298.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_436299.1	COG5000
YP_436300.1	Retron-type reverse transcriptase; COG3344
YP_436303.1	COG1883
YP_436304.1	catalyzes the formation of pyruvate from oxaloacetate
YP_436307.1	TIGRFAMsMatches:TIGR00202
YP_436309.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_436310.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_436312.1	COG1575
YP_436313.1	COG1714
YP_436314.1	COG4598
YP_436315.1	COG0834
YP_436316.1	COG4215
YP_436317.1	COG4160
YP_436318.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_436319.1	COG0642
YP_436320.1	COG4566
YP_436321.1	COG0739
YP_436322.1	COG1180
YP_436323.1	COG3145
YP_436325.1	COG1226
YP_436326.1	COG1067
YP_436328.1	COG0746
YP_436329.1	COG0314
YP_436330.1	COG3094
YP_436332.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_436333.1	COG1546
YP_436334.1	This protein performs the mismatch recognition step during the DNA repair process
YP_436335.1	COG1146
YP_436336.1	COG0542
YP_436337.1	COG0164
YP_436338.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_436339.1	TIGRFAMsMatches:TIGR01852
YP_436340.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_436341.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_436342.1	COG2825
YP_436344.1	COG4775
YP_436345.1	COG0750
YP_436346.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_436347.1	COG0575
YP_436348.1	TIGRFAMsMatches:TIGR00055
YP_436349.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_436350.1	Catalyzes the phosphorylation of UMP to UDP
YP_436351.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_436352.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_436353.1	TIGRFAMsMatches:TIGR00500
YP_436354.1	Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_436355.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_436357.1	COG1393
YP_436358.1	COG2171
YP_436359.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_436362.1	COG1278
YP_436363.1	uncharacterized protein conserved in bacteria COG2900
YP_436364.1	COG1083
YP_436365.1	COG2089
YP_436368.1	Membrane protein involved in the export of O-antigen and teichoic acid COG2244
YP_436370.1	COG0463
YP_436371.1	COG1215
YP_436372.1	COG0438
YP_436373.1	COG0463
YP_436375.1	COG4969
YP_436376.1	COG4969
YP_436377.1	COG2804
YP_436378.1	COG1459
YP_436379.1	COG1989
YP_436380.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_436381.1	COG3024
YP_436383.1	COG1720
YP_436385.1	COG0642
YP_436387.1	COG0025
YP_436391.1	COG2992
YP_436392.1	COG3339
YP_436393.1	COG0204
YP_436395.1	COG0747
YP_436397.1	COG0183
YP_436398.1	COG1485
YP_436399.1	COG3105
YP_436400.1	COG0327
YP_436401.1	COG0265
YP_436402.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_436403.1	COG0141
YP_436404.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_436405.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_436407.1	COG5007
YP_436408.1	COG3113
YP_436409.1	COG2854
YP_436410.1	COG1463
YP_436411.1	COG0767
YP_436412.1	COG1127
YP_436413.1	COG0794
YP_436414.1	COG1778
YP_436415.1	COG3117
YP_436416.1	COG1934
YP_436417.1	COG1137
YP_436418.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_436419.1	COG1544
YP_436420.1	TIGRFAMsMatches:TIGR01419
YP_436421.1	COG1660
YP_436422.1	Phosphotransferase system, HPr-related protein; COG1925
YP_436423.1	TIGRFAMsMatches:TIGR00400
YP_436424.1	COG3028
YP_436425.1	COG0388
YP_436426.1	COG3164
YP_436427.1	COG1530
YP_436428.1	TIGRFAMsMatches:TIGR00172
YP_436429.1	COG2891
YP_436430.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_436431.1	functions in MreBCD complex in some organisms
YP_436433.1	TIGRFAMsMatches:TIGR00135
YP_436434.1	TIGRFAMsMatches:TIGR00132
YP_436435.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_436436.1	COG0621
YP_436439.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_436440.1	COG2895
YP_436442.1	COG0075
YP_436443.1	COG3081
YP_436444.1	COG4517
YP_436445.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_436446.1	COG1702
YP_436447.1	COG0319
YP_436448.1	COG4535
YP_436449.1	Transfers the fatty acyl group on membrane lipoproteins
YP_436450.1	COG3590
YP_436452.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_436453.1	COG2980
YP_436454.1	COG1466
YP_436456.1	COG2356
YP_436457.1	COG1960
YP_436458.1	COG1960
YP_436460.1	COG1749
YP_436461.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_436462.1	COG0500
YP_436463.1	COG0596
YP_436464.1	TIGRFAMsMatches:TIGR00858
YP_436465.1	TIGRFAMsMatches:TIGR00433
YP_436466.1	COG1040
YP_436467.1	COG0579
YP_436468.1	COG0697
YP_436469.1	COG3268
YP_436471.1	TIGRFAMsMatches:TIGR00184
YP_436472.1	COG3705
YP_436473.1	COG3242
YP_436474.1	TIGRFAMsMatches:TIGR01932
YP_436475.1	TIGRFAMsMatches:TIGR01933
YP_436476.1	COG2262
YP_436477.1	COG1923
YP_436478.1	TIGRFAMsMatches:TIGR00174
YP_436479.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_436481.1	COG0860
YP_436482.1	COG0802
YP_436483.1	COG0062
YP_436484.1	TIGRFAMsMatches:TIGR00276
YP_436485.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_436486.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_436487.1	COG1360
YP_436488.1	COG1291
YP_436490.1	COG2897
YP_436491.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_436492.1	COG2269
YP_436493.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_436494.1	COG1509
YP_436495.1	COG0050
YP_436496.1	COG5001
YP_436497.1	TIGRFAMsMatches:TIGR00338
YP_436498.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_436500.1	COG0741
YP_436501.1	COG2829
YP_436502.1	COG1533
YP_436503.1	COG1946
YP_436504.1	COG0715
YP_436505.1	COG3853
YP_436507.1	COG0715
YP_436508.1	COG2304
YP_436509.1	COG0715
YP_436510.1	COG1116
YP_436511.1	COG0600
YP_436514.1	COG0262
YP_436515.1	COG0834
YP_436520.1	COG1033
YP_436521.1	COG0607
YP_436522.1	COG0640
YP_436523.1	COG0477
YP_436524.1	COG1566
YP_436525.1	COG1309
YP_436526.1	COG1670
YP_436528.1	COG0454
YP_436529.1	COG4912
YP_436530.1	COG5472
YP_436531.1	COG0834
YP_436532.1	Transcriptional regulator containing an AAA-type ATPase domain and a DNA-binding domain; COG1221
YP_436533.1	COG1842
YP_436534.1	acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding
YP_436535.1	putative stress-responsive transcriptional regulator; COG1983
YP_436536.1	COG2824
YP_436542.1	COG2941
YP_436543.1	COG3469
YP_436545.1	COG0642
YP_436546.1	COG3706
YP_436547.1	COG4771
YP_436549.1	COG3720
YP_436550.1	COG4558
YP_436551.1	COG0609
YP_436552.1	COG4559
YP_436553.1	COG0834
YP_436559.1	COG1280
YP_436561.1	COG3791
YP_436564.1	COG3293
YP_436567.1	COG0841
YP_436568.1	COG0845
YP_436569.1	COG1309
YP_436571.1	COG0583
YP_436575.1	COG0834
YP_436576.1	reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_436577.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_436578.1	catalyzes the degradation of arginine to citruline and ammonia
YP_436579.1	COG0531
YP_436580.1	COG3237
YP_436584.1	COG0542
YP_436585.1	COG0542
YP_436586.1	COG0542
YP_436587.1	COG2366
YP_436588.1	Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; COG4650
YP_436592.1	COG1403
YP_436595.1	COG0574
YP_436596.1	COG1520
YP_436597.1	COG1741
YP_436599.1	COG2977
YP_436603.1	COG1607
YP_436606.1	COG0332
YP_436607.1	COG0451
YP_436608.1	COG0491
YP_436609.1	COG1541
YP_436612.1	COG4638
YP_436615.1	COG2135
YP_436617.1	COG0583
YP_436618.1	COG0384
YP_436619.1	COG1280
YP_436620.1	COG2329
YP_436622.1	COG0640
YP_436628.1	COG0443
YP_436630.1	COG5184
YP_436632.1	COG1840
YP_436633.1	COG2197
YP_436635.1	COG0642
YP_436638.1	COG3357
YP_436644.1	COG2867
YP_436645.1	COG0596
YP_436646.1	COG2326
YP_436647.1	COG3000
YP_436650.1	COG0714
YP_436653.1	COG2207
YP_436655.1	COG0454
YP_436656.1	COG1278
YP_436658.1	TIGRFAMsMatches:TIGR02063
YP_436659.1	COG2162
YP_436660.1	COG0697
YP_436661.1	COG0664
YP_436663.1	COG2169
YP_436664.1	COG3826
YP_436671.1	COG1309
YP_436672.1	COG2319
YP_436673.1	COG0457
YP_436674.1	COG0726
YP_436675.1	predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein
YP_436677.1	COG1115
YP_436678.1	COG4941
YP_436679.1	COG3795
YP_436680.1	COG4319
YP_436681.1	COG3795
YP_436684.1	COG0841
YP_436685.1	COG0845
YP_436694.1	COG3335
YP_436697.1	COG3415
YP_436702.1	COG1396
YP_436704.1	COG1309
YP_436708.1	DNA invertase Pin-like protein; COG1961
YP_436710.1	COG0454
YP_436711.1	COG4453
YP_436714.1	COG2003
YP_436718.1	Transposase and inactivated derivatives COG4584
YP_436719.1	DNA replication protein; COG1484
YP_436721.1	COG3440
YP_436722.1	COG3293
YP_436726.1	COG3209
YP_436735.1	COG5449
YP_436749.1	COG0616
YP_436750.1	TIGRFAMsMatches:TIGR01539
YP_436752.1	COG5525
YP_436762.1	COG0863
YP_436765.1	COG0817
YP_436766.1	COG3378
YP_436776.1	COG1396
YP_436779.1	DNA invertase Pin-like protein; COG1961
YP_436782.1	COG2003
YP_436783.1	COG3501
YP_436784.1	COG5351
YP_436785.1	COG0304
YP_436791.1	COG0210
YP_436793.1	COG0210
YP_436798.1	COG3727
YP_436799.1	COG0270
YP_436803.1	COG0397
YP_436808.1	COG0286
YP_436809.1	COG1714
YP_436810.1	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) COG0189
YP_436812.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_436813.1	COG1404
YP_436814.1	COG0154
YP_436815.1	COG0491
YP_436817.1	COG5001
YP_436818.1	COG3706
YP_436819.1	COG0784
YP_436820.1	COG0834
YP_436822.1	COG1309
YP_436823.1	COG0433
YP_436824.1	COG1028
YP_436825.1	COG4799
YP_436826.1	COG1960
YP_436827.1	COG1024
YP_436828.1	COG4770
YP_436829.1	COG1028
YP_436830.1	activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization
YP_436831.1	COG5001
YP_436832.1	COG0513
YP_436840.1	COG1028
YP_436841.1	COG0583
YP_436842.1	COG0653
YP_436843.1	COG3718
YP_436844.1	COG0673
YP_436848.1	COG1737
YP_436849.1	COG0673
YP_436850.1	COG1638
YP_436851.1	COG3090
YP_436852.1	COG1593
YP_436853.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_436854.1	COG2898
YP_436855.1	COG1055
YP_436856.1	COG0564
YP_436859.1	COG2050
YP_436861.1	COG1309
YP_436865.1	COG1960
YP_436866.1	COG0748
YP_436867.1	COG3784
YP_436871.1	COG2607
YP_436872.1	COG0163
YP_436873.1	TIGRFAMsMatches:TIGR01081
YP_436874.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_436875.1	COG1309
YP_436877.1	COG3556
YP_436878.1	COG1522
YP_436879.1	uncharacterized member of the APC superfamily of amino acid transporters; unknown function
YP_436880.1	COG0247
YP_436881.1	COG0277
YP_436882.1	COG0277
YP_436883.1	COG0834
YP_436884.1	COG4597
YP_436885.1	COG0765
YP_436886.1	COG1126
YP_436887.1	COG0454
YP_436888.1	COG0384
YP_436892.1	COG3240
YP_436893.1	COG0515
YP_436894.1	COG2223
YP_436896.1	COG1251
YP_436897.1	COG2146
YP_436898.1	COG0243
YP_436899.1	COG0346
YP_436900.1	COG0834
YP_436901.1	COG1785
YP_436902.1	COG0745
YP_436903.1	COG3706
YP_436905.1	COG0683
YP_436906.1	COG0840
YP_436907.1	COG0643
YP_436910.1	COG0661
YP_436911.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_436912.1	TIGRFAMsMatches:TIGR00214
YP_436913.1	COG2921
YP_436914.1	COG1686
YP_436915.1	COG0797
YP_436916.1	TIGRFAMsMatches:TIGR02282
YP_436917.1	TIGRFAMsMatches:TIGR02210
YP_436918.1	COG0768
YP_436919.1	COG1576
YP_436920.1	COG0799
YP_436921.1	TIGRFAMsMatches:TIGR00482
YP_436922.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_436923.1	COG2199
YP_436924.1	COG3706
YP_436925.1	COG0586
YP_436926.1	COG2802; similar to the N-terminal domain of Lon protease
YP_436927.1	COG1226
YP_436928.1	COG1639
YP_436929.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_436930.1	TIGRFAMsMatches:TIGR01970
YP_436931.1	COG0262
YP_436932.1	COG0207
YP_436933.1	TIGRFAMsMatches:TIGR00544
YP_436934.1	COG0730
YP_436935.1	COG3332
YP_436937.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_436938.1	Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_436939.1	TIGRFAMsMatches:TIGR01280
YP_436940.1	COG0142
YP_436941.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_436942.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_436943.1	COG2896
YP_436944.1	COG1977
YP_436945.1	TIGRFAMsMatches:TIGR00581
YP_436946.1	COG0494
YP_436947.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_436948.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_436949.1	COG0739
YP_436951.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_436952.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_436953.1	TIGRFAMsMatches:TIGR01174
YP_436954.1	COG1589
YP_436955.1	COG1181
YP_436956.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_436957.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_436958.1	COG0772
YP_436959.1	TIGRFAMsMatches:TIGR01087
YP_436960.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_436961.1	COG0770
YP_436962.1	COG0769
YP_436963.1	Cell division protein FtsI/penicillin-binding protein 2 COG0768
YP_436964.1	TIGRFAMsMatches:TIGR02209
YP_436965.1	TIGRFAMsMatches:TIGR00006
YP_436966.1	COG2001
YP_436967.1	COG0313
YP_436968.1	COG3107
YP_436969.1	COG0792
YP_436970.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_436971.1	COG2969
YP_436972.1	COG0625
YP_436973.1	COG2857
YP_436974.1	COG1290
YP_436975.1	TIGRFAMsMatches:TIGR01416
YP_436976.1	COG0103
YP_436977.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_436978.1	COG0084
YP_436979.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_436981.1	TIGRFAMsMatches:TIGR01575
YP_436983.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_436985.1	COG3335
YP_436987.1	COG2717
YP_436988.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_436989.1	TIGRFAMsMatches:TIGR00473
YP_436990.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_436991.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_436992.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit
YP_436994.1	COG0542
YP_436995.1	COG1496
YP_436996.1	COG0564
YP_436997.1	COG4105
YP_436998.1	COG0171
YP_436999.1	COG0642
YP_437000.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_437001.1	COG4970
YP_437002.1	COG4968
YP_437003.1	COG3419
YP_437005.1	COG4966
YP_437006.1	COG4970
YP_437007.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_437008.1	COG1047
YP_437009.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_437010.1	TIGRFAMsMatches:TIGR00392
YP_437011.1	TIGRFAMsMatches:TIGR00083
YP_437012.1	TIGRFAMsMatches:TIGR01695
YP_437014.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_437015.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_437016.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_437017.1	involved in the peptidyltransferase reaction during translation
YP_437018.1	TIGRFAMsMatches:TIGR00061
YP_437019.1	COG0142
YP_437020.1	COG2194
YP_437021.1	COG2078
YP_437022.1	COG1355
YP_437027.1	COG1267
YP_437028.1	TIGRFAMsMatches:TIGR01379
YP_437029.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_437030.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_437031.1	COG0108
YP_437032.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_437033.1	TIGRFAMsMatches:TIGR00326
YP_437034.1	COG1327
YP_437035.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_437036.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_437038.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_437039.1	TIGRFAMsMatches:TIGR01464
YP_437040.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_437041.1	catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate
YP_437042.1	COG3266
YP_437043.1	TIGRFAMsMatches:TIGR01357
YP_437044.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_437045.1	Type II secretory pathway, component HofQ COG4796
YP_437046.1	COG3168
YP_437047.1	COG3167
YP_437048.1	COG3166
YP_437049.1	COG4972
YP_437050.1	COG5009
YP_437051.1	COG0281
YP_437052.1	TIGRFAMsMatches:TIGR00105
YP_437053.1	TIGRFAMsMatches:TIGR00595
YP_437054.1	COG3087
YP_437055.1	heat shock protein involved in degradation of misfolded proteins
YP_437056.1	heat shock protein involved in degradation of misfolded proteins
YP_437057.1	COG3536
YP_437058.1	COG1752
YP_437059.1	COG3605
YP_437060.1	hydrolyzes diadenosine polyphosphate
YP_437061.1	COG0560
YP_437063.1	COG1092
YP_437064.1	COG1639
YP_437065.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_437066.1	COG3150
YP_437067.1	COG1409
YP_437068.1	COG3151
YP_437069.1	COG0494
YP_437071.1	COG1538
YP_437072.1	COG1519
YP_437073.1	COG0578
YP_437074.1	COG0667
YP_437075.1	COG5345
YP_437076.1	COG2200
YP_437078.1	COG3706
YP_437079.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_437080.1	TIGRFAMsMatches:TIGR00531
YP_437081.1	TIGRFAMsMatches:TIGR00514
YP_437082.1	TIGRFAMsMatches:TIGR00406
YP_437084.1	COG0042
YP_437085.1	Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription
YP_437086.1	involved in de novo purine biosynthesis
YP_437087.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_437088.1	COG5001
YP_437089.1	COG0526
YP_437091.1	COG1956
YP_437092.1	COG0697
YP_437093.1	COG3706
YP_437095.1	TIGRFAMsMatches:TIGR00674
YP_437096.1	COG1960
YP_437098.1	COG0477
YP_437100.1	COG0574
YP_437103.1	COG4992
YP_437104.1	COG0500
YP_437105.1	COG0236
YP_437106.1	COG0156
YP_437107.1	COG1020
YP_437108.1	COG3321
YP_437111.1	COG0778
YP_437112.1	COG3752
YP_437115.1	COG3644
YP_437117.1	COG0642
YP_437118.1	COG0745
YP_437119.1	COG4675
YP_437120.1	COG4675
YP_437121.1	COG4675
YP_437129.1	COG0367
YP_437130.1	COG1132
YP_437132.1	COG0456
YP_437141.1	COG0834
YP_437143.1	COG0840
YP_437149.1	COG2207
YP_437150.1	COG2942
YP_437151.1	COG0524
YP_437152.1	COG2207
YP_437153.1	COG3839
YP_437154.1	COG0395
YP_437155.1	COG1175
YP_437156.1	COG1653
YP_437157.1	COG0642
YP_437158.1	COG0745
YP_437159.1	COG2860
YP_437160.1	COG1280
YP_437161.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_437164.1	COG3132
YP_437165.1	COG2214
YP_437168.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_437169.1	COG0483
YP_437170.1	COG0834
YP_437171.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_437173.1	COG2363
YP_437174.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_437175.1	protein associated with Co2+ and Mg2+ efflux
YP_437176.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_437177.1	TIGRFAMsMatches:TIGR00557
YP_437178.1	COG0760
YP_437179.1	COG1452
YP_437180.1	COG1752
YP_437181.1	COG3178
YP_437182.1	translation initiation factor 2B, gamma/epsilon subunit (eIF-2Bgamma/eIF-2Bepsilon); COG1208
YP_437183.1	COG1076
YP_437185.1	TIGRFAMsMatches:TIGR01163
YP_437186.1	TIGRFAMsMatches:TIGR01449
YP_437187.1	COG2931
YP_437189.1	COG0845
YP_437190.1	COG2274
YP_437194.1	COG0583
YP_437195.1	COG1960
YP_437196.1	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit COG0022
YP_437197.1	COG0331
YP_437198.1	TIGRFAMsMatches:TIGR00564
YP_437199.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_437200.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_437201.1	COG0134
YP_437202.1	COG0583
YP_437203.1	COG5457
YP_437206.1	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons
YP_437207.1	COG1765
YP_437209.1	S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_437210.1	COG0705; similar to Drosophila rhomboid
YP_437211.1	COG3954
YP_437212.1	COG0464
YP_437217.1	COG2165
YP_437218.1	COG2165
YP_437220.1	COG1459
YP_437221.1	COG2804
YP_437222.1	COG0457
YP_437223.1	COG3267
YP_437224.1	COG1450
YP_437230.1	COG1045
YP_437231.1	COG1045
YP_437232.1	COG0236
YP_437233.1	COG3161
YP_437234.1	COG0318
YP_437235.1	COG1215
YP_437236.1	COG2605
YP_437237.1	COG0529
YP_437240.1	COG0438
YP_437242.1	COG1045
YP_437244.1	COG0845
YP_437246.1	COG2244
YP_437250.1	translation initiation factor 2B, gamma/epsilon subunit (eIF-2Bgamma/eIF-2Bepsilon); COG1208
YP_437251.1	TIGRFAMsMatches:TIGR00441
YP_437257.1	COG1181
YP_437258.1	COG0629
YP_437259.1	COG0477
YP_437260.1	TIGRFAMsMatches:TIGR00630
YP_437261.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_437262.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_437263.1	TIGRFAMsMatches:TIGR01017
YP_437264.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_437265.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_437266.1	TIGRFAMsMatches:TIGR01022
YP_437267.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_437268.1	TIGRFAMsMatches:TIGR01071
YP_437269.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_437270.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_437271.1	binds 5S rRNA along with protein L5 and L25
YP_437272.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_437273.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_437274.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_437275.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_437276.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_437277.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_437278.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_437279.1	TIGRFAMsMatches:TIGR00012
YP_437280.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_437281.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_437282.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_437283.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_437284.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_437285.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_437286.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_437287.1	COG0087
YP_437288.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_437289.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_437290.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_437291.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_437292.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_437293.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_437294.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_437295.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_437296.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_437297.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_437298.1	TIGRFAMsMatches:TIGR01632
YP_437299.1	Modulates Rho-dependent transcription termination
YP_437300.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_437301.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_437304.1	COG1521; similar to Bvg accessory factor
YP_437305.1	COG0340
YP_437306.1	DNA replication protein; COG1484
YP_437307.1	Transposase and inactivated derivatives COG4584
YP_437310.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_437311.1	COG0739
YP_437312.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_437314.1	COG0316
YP_437315.1	COG1664
YP_437317.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_437318.1	COG0038
YP_437319.1	COG1981
YP_437320.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_437322.1	TIGRFAMsMatches:TIGR02071
YP_437323.1	COG2187
YP_437324.1	COG1357
YP_437325.1	COG0664
YP_437326.1	COG2146
YP_437327.1	TIGRFAMsMatches:TIGR00230
YP_437328.1	COG1734
YP_437329.1	Glutamyl- and glutaminyl-tRNA synthetase; COG0008
YP_437331.1	COG0591
YP_437332.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_437334.1	COG0617
YP_437335.1	TIGRFAMsMatches:TIGR01498
YP_437336.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_437337.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_437338.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_437339.1	TIGRFAMsMatches:TIGR01498
YP_437340.1	TIGRFAMsMatches:TIGR00525
YP_437341.1	COG0344
YP_437342.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_437343.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_437344.1	COG1610
YP_437345.1	COG0358
YP_437346.1	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); COG0568
YP_437354.1	COG1396
YP_437356.1	COG2856
YP_437358.1	COG0625
YP_437360.1	COG2207
YP_437362.1	COG0006
YP_437363.1	COG1012
YP_437364.1	COG1473
YP_437365.1	COG1292
YP_437366.1	COG0583
YP_437367.1	COG1028
YP_437369.1	COG3803
YP_437371.1	COG0642
YP_437372.1	COG0840
YP_437373.1	COG0739
YP_437374.1	COG1723
YP_437375.1	COG4301
YP_437376.1	COG1262
YP_437380.1	COG1639
YP_437381.1	catalyzes branch migration in Holliday junction intermediates
YP_437382.1	COG0583
YP_437383.1	COG0451
YP_437384.1	COG0251
YP_437385.1	COG0317
YP_437386.1	TIGRFAMsMatches:TIGR00690
YP_437387.1	COG0194
YP_437388.1	COG0583
YP_437389.1	COG0518
YP_437390.1	COG1454
YP_437391.1	COG1012
YP_437392.1	COG0174
YP_437393.1	COG0531
YP_437395.1	COG1485
YP_437401.1	COG0500
YP_437402.1	COG3415
YP_437403.1	COG1373
YP_437404.1	COG1061
YP_437405.1	DNA replication protein; COG1484
YP_437406.1	Transposase and inactivated derivatives COG4584
YP_437407.1	COG1561
YP_437409.1	TIGRFAMsMatches:TIGR01966
YP_437410.1	COG0708
YP_437411.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_437412.1	COG0730
YP_437413.1	COG0488
YP_437416.1	COG3174
YP_437417.1	COG0826
YP_437419.1	TIGRFAMsMatches:TIGR00938
YP_437421.1	DNA polymerase I - 3'-5' exonuclease and polymerase domains COG0749
YP_437422.1	COG5008
YP_437423.1	COG2805
YP_437424.1	COG0325
YP_437425.1	TIGRFAMsMatches:TIGR00112
YP_437426.1	COG0762
YP_437427.1	COG1872
YP_437428.1	COG0699
YP_437429.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_437430.1	TIGRFAMsMatches:TIGR02081
YP_437432.1	TIGRFAMsMatches:TIGR00042
YP_437433.1	COG0635
YP_437435.1	TIGRFAMsMatches:TIGR00091
YP_437438.1	COG0606
YP_437443.1	COG1396
YP_437445.1	COG2003
YP_437446.1	COG1437
YP_437447.1	COG0499
YP_437448.1	COG0433
YP_437452.1	COG3335
YP_437453.1	COG3415
YP_437459.1	DNA invertase Pin-like protein; COG1961
YP_437464.1	COG0232
YP_437465.1	COG0758
YP_437466.1	DNA invertase Pin-like protein; COG1961
YP_437467.1	COG0606
YP_437468.1	COG2960
YP_437469.1	COG0347
YP_437470.1	TIGRFAMsMatches:TIGR00836
YP_437471.1	COG4095
YP_437472.1	COG3034
YP_437473.1	COG0304
YP_437474.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_437475.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_437476.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_437477.1	COG0366
YP_437478.1	COG0783
YP_437479.1	COG0642
YP_437480.1	COG0745
YP_437482.1	COG3134
YP_437483.1	COG1309
YP_437484.1	COG0625
YP_437485.1	COG0625
YP_437486.1	COG2319
YP_437487.1	binds specifically to the major sigma factor sigma 70; active in stationary phase
YP_437488.1	COG1495
YP_437490.1	COG1580
YP_437492.1	involved in the first step of glutathione biosynthesis
YP_437493.1	COG2183
YP_437494.1	COG2200
YP_437497.1	TIGRFAMsMatches:TIGR01074
YP_437498.1	COG2129
YP_437500.1	COG5631
YP_437501.1	COG0145
YP_437502.1	COG1593
YP_437503.1	COG3090
YP_437504.1	COG1638
YP_437506.1	COG3245
YP_437509.1	COG1109
YP_437510.1	COG3382
YP_437514.1	COG0834
YP_437515.1	COG0666
YP_437516.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_437517.1	COG4181
YP_437518.1	COG3127
YP_437519.1	COG0477
YP_437520.1	COG0656
YP_437523.1	COG0188
YP_437526.1	COG0366
YP_437527.1	COG1609
YP_437529.1	COG0778
YP_437530.1	COG0079
YP_437531.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_437533.1	COG5446
YP_437534.1	TIGRFAMsMatches:TIGR02030
YP_437535.1	TIGRFAMsMatches:TIGR00708
YP_437536.1	COG1797
YP_437537.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_437538.1	COG2099
YP_437539.1	COG2138
YP_437540.1	COG2082
YP_437541.1	TIGRFAMsMatches:TIGR01468
YP_437542.1	TIGRFAMsMatches:TIGR01467
YP_437543.1	catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3
YP_437544.1	COG1010
YP_437545.1	TIGRFAMsMatches:TIGR01465
YP_437549.1	COG2010
YP_437550.1	COG0454
YP_437552.1	COG0789
YP_437554.1	COG1280
YP_437557.1	COG0625
YP_437560.1	COG1278
YP_437561.1	COG0346
YP_437562.1	COG1238
YP_437566.1	COG1280
YP_437567.1	COG2207
YP_437569.1	COG0523
YP_437570.1	TIGRFAMsMatches:TIGR02257
YP_437571.1	COG0454
YP_437572.1	COG1284
YP_437573.1	COG2606
YP_437575.1	COG0454
YP_437578.1	COG0604
YP_437579.1	COG0583
YP_437582.1	COG3211
YP_437583.1	COG1653
YP_437587.1	COG4977
YP_437588.1	COG2220
YP_437591.1	COG4886
YP_437592.1	COG2954
YP_437593.1	COG0477
YP_437595.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_437603.1	COG0790
YP_437609.1	COG2003
YP_437613.1	COG3791
YP_437615.1	COG2374
YP_437616.1	COG0123
YP_437617.1	TIGRFAMsMatches:TIGR01292
YP_437620.1	COG3675
YP_437622.1	COG0524
YP_437623.1	Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein
YP_437626.1	COG1169
YP_437627.1	TIGRFAMsMatches:TIGR02275
YP_437628.1	COG1535
YP_437629.1	COG1020
YP_437630.1	COG0001
YP_437631.1	COG0402
YP_437632.1	COG0477
YP_437633.1	COG0614
YP_437634.1	COG0609
YP_437635.1	COG4779
YP_437636.1	COG1120
YP_437637.1	catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin
YP_437640.1	COG0596
YP_437641.1	COG3575
YP_437644.1	COG1331
YP_437645.1	COG0598
YP_437646.1	COG0596
YP_437647.1	COG1842
YP_437648.1	COG4298
YP_437650.1	COG0845
YP_437651.1	COG0841
YP_437652.1	COG2200
YP_437653.1	COG0500
YP_437654.1	COG2207
YP_437656.1	COG3789
YP_437657.1	COG1842
YP_437658.1	COG1226
YP_437660.1	COG3766
YP_437661.1	COG5463
YP_437662.1	COG0754
YP_437664.1	COG1638
YP_437665.1	COG3090
YP_437666.1	COG1593
YP_437667.1	COG0834
YP_437668.1	COG1047
YP_437670.1	COG3220
YP_437672.1	COG2982
YP_437673.1	COG1022
YP_437675.1	COG1028
YP_437676.1	COG0457
YP_437677.1	COG0745
YP_437678.1	COG0642
YP_437679.1	COG0491
YP_437680.1	COG0583
YP_437681.1	COG1595
YP_437682.1	COG3806
YP_437683.1	COG0154
YP_437684.1	COG1022
YP_437686.1	COG0583
YP_437688.1	COG1252
YP_437689.1	COG2862
YP_437691.1	COG0625
YP_437692.1	COG1028
YP_437693.1	COG0406
YP_437694.1	COG3173
YP_437695.1	COG1028
YP_437696.1	COG1960
YP_437697.1	COG0583
YP_437700.1	COG0603
YP_437701.1	COG0602
YP_437702.1	COG0679
YP_437703.1	COG0243
YP_437705.1	COG0596
YP_437706.1	COG0252
YP_437710.1	COG3727
YP_437711.1	COG0270
YP_437712.1	COG4360
YP_437713.1	COG0861
YP_437717.1	COG0642
YP_437719.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204
YP_437721.1	COG2133
YP_437723.1	COG0454
YP_437724.1	COG0697
YP_437725.1	COG1846
YP_437726.1	COG0834
YP_437727.1	COG2207
YP_437729.1	COG2321
YP_437732.1	COG1262
YP_437737.1	COG1409
YP_437738.1	COG3710
YP_437742.1	COG2827
YP_437743.1	COG0687
YP_437744.1	COG5001
YP_437745.1	COG0530
YP_437746.1	COG0639
YP_437747.1	COG0591
YP_437749.1	COG3264
YP_437751.1	COG0625
YP_437752.1	COG3915
YP_437753.1	COG0642
YP_437755.1	COG0031
YP_437757.1	catalyzes the formation of oxaloacetate from pyruvate
YP_437758.1	biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate
YP_437759.1	COG1116
YP_437760.1	COG0600
YP_437761.1	COG0715
YP_437762.1	COG1879
YP_437765.1	COG1446
YP_437770.1	COG1446
YP_437771.1	COG0840
YP_437773.1	COG5595
YP_437775.1	COG3128
YP_437776.1	COG0625
YP_437777.1	COG2378
YP_437778.1	Retron-type reverse transcriptase; COG3344
YP_437780.1	COG5083
YP_437781.1	COG0693
YP_437782.1	COG2942
YP_437783.1	COG0346
YP_437784.1	COG1733
YP_437785.1	COG0789
YP_437786.1	TIGRFAMsMatches:TIGR01511
YP_437787.1	COG4633
YP_437788.1	COG3019
YP_437790.1	COG4103
YP_437792.1	COG3344
YP_437794.1	COG0477
YP_437795.1	COG0583
YP_437800.1	COG0582
YP_437806.1	DNA polymerase III, epsilon subunit and related 3'-5' exonucleases COG0847
YP_437813.1	TIGRFAMsMatches:TIGR01540
YP_437814.1	COG4373
YP_437816.1	TIGRFAMsMatches:TIGR01551
YP_437827.1	COG5283
YP_437829.1	COG3299
YP_437836.1	COG3501
YP_437839.1	COG0744
YP_437840.1	COG3405
YP_437843.1	COG3491
YP_437844.1	COG3558
YP_437845.1	COG1309
YP_437846.1	COG4969
YP_437847.1	TIGRFAMsMatches:TIGR00066
YP_437848.1	COG2207
YP_437849.1	COG3687
YP_437850.1	COG1846
YP_437852.1	COG3046
YP_437854.1	COG0454
YP_437855.1	COG0834
YP_437857.1	COG0583
YP_437858.1	COG3565
YP_437859.1	COG0111
YP_437860.1	COG4763
YP_437861.1	COG0834
YP_437862.1	COG2130
YP_437863.1	COG1028
YP_437865.1	COG0524
YP_437867.1	COG1879
YP_437870.1	COG3210
YP_437872.1	COG0534
YP_437873.1	COG1472
YP_437874.1	COG1609
YP_437875.1	COG0810
YP_437876.1	COG1120
YP_437877.1	COG0609
YP_437878.1	COG0614
YP_437880.1	COG1167
YP_437882.1	TIGRFAMsMatches:TIGR01122
YP_437884.1	COG0557
YP_437886.1	COG1994
YP_437888.1	TIGRFAMsMatches:TIGR00754
YP_437889.1	COG2906
YP_437897.1	COG0456
YP_437898.1	COG0589
YP_437899.1	COG4651
YP_437900.1	COG0474
YP_437901.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_437902.1	COG3978
YP_437903.1	COG1075
YP_437905.1	COG0515
YP_437906.1	COG0631
YP_437907.1	COG1716
YP_437916.1	COG3205
YP_437917.1	TIGRFAMsMatches:TIGR01341
YP_437922.1	COG4783
YP_437923.1	COG1739
YP_437928.1	COG0500
YP_437929.1	COG0846
YP_437930.1	COG0426
YP_437938.1	COG4728
YP_437939.1	COG0730
YP_437941.1	COG3738
YP_437943.1	COG4608
YP_437944.1	COG0444
YP_437945.1	COG1173
YP_437946.1	COG0601
YP_437947.1	COG0747
YP_437948.1	COG1609
YP_437949.1	COG3839
YP_437950.1	COG2723
YP_437951.1	COG0395
YP_437952.1	COG1175
YP_437953.1	COG1653
YP_437955.1	COG1609
YP_437956.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_437957.1	COG5640
YP_437959.1	COG0745
YP_437960.1	COG0642
YP_437961.1	COG1574
YP_437964.1	COG3291
YP_437965.1	COG2207
YP_437966.1	COG0300
YP_437970.1	COG0208
YP_437971.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_437974.1	Type II secretory pathway, component PulF COG1459
YP_437975.1	COG4969
YP_437976.1	COG2315
YP_437977.1	COG2808
YP_437978.1	COG1247
YP_437979.1	COG0834
YP_437980.1	COG2030
YP_437981.1	COG2199
YP_437982.1	COG1538
YP_437983.1	COG0841
YP_437984.1	COG0845
YP_437986.1	COG0583
YP_437988.1	COG0456
YP_437990.1	COG5640
YP_437992.1	COG2067
YP_437993.1	COG0739
YP_437996.1	COG5528
YP_437997.1	COG0702
YP_437998.1	COG1309
YP_437999.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_438000.1	TIGRFAMsMatches:TIGR00262
YP_438001.1	COG1671
YP_438002.1	COG1344
YP_438003.1	COG1349
YP_438004.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_438005.1	TIGRFAMsMatches:TIGR01311
YP_438006.1	COG3284
YP_438007.1	COG3839
YP_438008.1	COG3839
YP_438009.1	COG1175
YP_438010.1	COG0395
YP_438013.1	COG1653
YP_438014.1	COG0834
YP_438015.1	COG0811
YP_438016.1	COG0848
YP_438017.1	COG0810
YP_438018.1	COG2188
YP_438019.1	COG3839
YP_438020.1	COG0395
YP_438021.1	COG1175
YP_438022.1	COG1653
YP_438024.1	TIGRFAMsMatches:TIGR00502
YP_438025.1	COG2971
YP_438026.1	TIGRFAMsMatches:TIGR00221
YP_438027.1	COG2066
YP_438028.1	TIGRFAMsMatches:TIGR00484
YP_438032.1	COG1488
YP_438033.2	NadM-Nudix subfamily; involved in creation of nicotanimide adenine dinucleotide NAD from either biosynthetic or salvage pathways
YP_438034.1	COG3172
YP_438035.1	COG3201
YP_438036.1	COG1051
YP_438037.1	COG3236
YP_438039.1	COG0553
YP_438040.1	COG1397
YP_438041.1	COG3208
YP_438044.1	COG1701
YP_438045.1	COG0617
YP_438052.1	COG1132
YP_438057.1	catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters
YP_438058.1	COG2020
YP_438062.1	COG0583
YP_438063.1	COG1266
YP_438064.1	COG0664
YP_438065.1	COG1266
YP_438068.1	COG2373
YP_438069.1	COG4953
YP_438074.1	COG5433
YP_438076.1	COG0286
YP_438078.1	COG1112
YP_438083.1	COG0175
YP_438084.1	COG0419
YP_438089.1	COG3293
YP_438095.1	COG5351
YP_438097.1	COG3501
YP_438098.1	COG3293
YP_438099.1	COG3293
YP_438103.1	Transposase and inactivated derivatives COG2801
YP_438105.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_438106.1	TIGRFAMsMatches:TIGR01173
YP_438107.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_438108.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_438109.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_438110.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_438111.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_438112.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_438113.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_438114.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_438115.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation
YP_438117.1	COG1475
YP_438118.1	ATPase involved in chromosome partitioning; COG1192
YP_438119.1	TIGRFAMsMatches:TIGR00138
YP_438120.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_438121.1	COG0834
YP_438122.1	COG2076
YP_438123.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_438124.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_438125.1	TIGRFAMsMatches:TIGR00188