-- dump date 20240506_001737 -- class Genbank::Contig -- table contig_comment -- id comment NC_013422.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001801.1.REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine HeinhorstREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCCREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfallREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, AustraliaREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30 - 40CREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30 - 40C Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30 - 40C Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30 - 40C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30 - 40C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Carbon fixation, Sulfur oxidizerREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30 - 40C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Carbon fixation, Sulfur oxidizer Energy Source :: ChemolithoautotrophREFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30 - 40C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Carbon fixation, Sulfur oxidizer Energy Source :: Chemolithoautotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001801.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083909 Source DNA and bacteria available from Sabine Heinhorst (sabine.heinhorst@usm.edu) Contacts: Sabine Heinhorst (sabine.heinhorst@usm.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024765.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,362 Genes (coding) :: 2,331 CDSs (with protein) :: 2,331 Genes (RNA) :: 53 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 14 of 31 Pseudo Genes (incomplete) :: 21 of 31 Pseudo Genes (internal stop) :: 8 of 31 Pseudo Genes (multiple problems) :: 9 of 31 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halothiobacillus neapolitanus c2, ATCC 23641 Culture Collection ID :: ATCC 23641 GOLD Stamp ID :: Gi02105 Isolation Site :: Disintegrated concrete from an outfall sewer in Melbourne, Australia Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30 - 40C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Carbon fixation, Sulfur oxidizer Energy Source :: Chemolithoautotroph ##Metadata-END## COMPLETENESS: full length.