-- dump date 20140619_112031 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_663869.1 109946641 4177130 1..1350 1 NC_008229.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1350 dnaA 4177130 dnaA Helicobacter acinonychis str. Sheeba chromosomal replication initiation protein YP_663869.1 1 D 382638 CDS YP_663870.1 109946642 4176705 1575..3011 1 NC_008229.1 hypothetical protein 3011 4176705 Hac_0002 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663870.1 1575 D 382638 CDS YP_663871.1 109946643 4177406 3162..3914 1 NC_008229.1 AP endonuclease xth family; multifunctional DNA repair protein; has AP endonuclease, 3'-5' exonuclease, ribonuclease H, and 3'-phosphomonoesterase activities.; exodeoxyribonuclease III 3914 exoA 4177406 exoA Helicobacter acinonychis str. Sheeba exodeoxyribonuclease III YP_663871.1 3162 D 382638 CDS YP_663872.1 109946644 4176706 complement(3911..4546) 1 NC_008229.1 hypothetical protein 4546 4176706 Hac_0004 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663872.1 3911 R 382638 CDS YP_663873.1 109946645 4176707 complement(4550..4903) 1 NC_008229.1 hypothetical protein 4903 4176707 Hac_0005 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663873.1 4550 R 382638 CDS YP_663874.1 109946646 4177069 5021..6886 1 NC_008229.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 6886 recG 4177069 recG Helicobacter acinonychis str. Sheeba ATP-dependent DNA helicase RecG YP_663874.1 5021 D 382638 CDS YP_663875.1 109946647 4176715 6937..8328 1 NC_008229.1 (P08763) Type III restriction-modification system EcoPI enzyme mod (EC 2.1.1.72) (EcoPI methyltransferase) (M.EcoPI); hypothetical protein; type III restriction-modification system methylation subunit fragment 1 8328 mod fragment 1 4176715 mod fragment 1 Helicobacter acinonychis str. Sheeba type III restriction-modification system methylation subunit fragment 1 YP_663875.1 6937 D 382638 CDS YP_663876.1 109946648 4176718 8325..8915 1 NC_008229.1 (P08763) Type III restriction-modification system EcoPI enzyme mod (EC 2.1.1.72) (EcoPI methyltransferase) (M.EcoPI); hypothetical protein; type III restriction-modification system methylation subunit fragment 2 8915 mod fragment 2 4176718 mod fragment 2 Helicobacter acinonychis str. Sheeba type III restriction-modification system methylation subunit fragment 2 YP_663876.1 8325 D 382638 CDS YP_663877.1 109946649 4177075 8916..11840 1 NC_008229.1 (P08764) Type III restriction-modification system EcoPI enzyme res (EC 3.1.21.5); hypothetical protein; type III restriction enzyme 11840 res 4177075 res Helicobacter acinonychis str. Sheeba type III restriction enzyme YP_663877.1 8916 D 382638 CDS YP_663878.1 109946650 4176389 12025..13122 1 NC_008229.1 (Q60301) Hypothetical protein MJECS02; hypothetical protein; type II DNA modification enzyme (methyltransferase) fragment 1 13122 ECO57IR fragment 1 4176389 ECO57IR fragment 1 Helicobacter acinonychis str. Sheeba type II DNA modification enzyme (methyltransferase) fragment 1 YP_663878.1 12025 D 382638 CDS YP_663879.1 109946651 4176390 13240..15798 1 NC_008229.1 type II DNA modification enzyme (methyltransferase); hypothetical protein; type II DNA modification enzyme (methyltransferase) fragment 2 15798 ECO57IR fragment 2 4176390 ECO57IR fragment 2 Helicobacter acinonychis str. Sheeba type II DNA modification enzyme (methyltransferase) fragment 2 YP_663879.1 13240 D 382638 CDS YP_663880.1 109946652 4177492 complement(16548..17321) 1 NC_008229.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 17321 trpA 4177492 trpA Helicobacter acinonychis str. Sheeba tryptophan synthase subunit alpha YP_663880.1 16548 R 382638 CDS YP_663881.1 109946653 4177493 complement(17333..18514) 1 NC_008229.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 18514 trpB 4177493 trpB Helicobacter acinonychis str. Sheeba tryptophan synthase subunit beta YP_663881.1 17333 R 382638 CDS YP_663882.2 162139481 4177494 complement(18516..19874) 1 NC_008229.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 19874 trpC 4177494 trpC Helicobacter acinonychis str. Sheeba bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_663882.2 18516 R 382638 CDS YP_663883.1 109946655 4176666 complement(19867..20874) 1 NC_008229.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 20874 trpD 4176666 trpD Helicobacter acinonychis str. Sheeba anthranilate phosphoribosyltransferase YP_663883.1 19867 R 382638 CDS YP_663884.1 109946656 4176668 complement(20871..21458) 1 NC_008229.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 21458 trpG 4176668 trpG Helicobacter acinonychis str. Sheeba anthranilate synthase component II YP_663884.1 20871 R 382638 CDS YP_663885.1 109946657 4176667 complement(21455..22957) 1 NC_008229.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 22957 trpE 4176667 trpE Helicobacter acinonychis str. Sheeba anthranilate synthase component I YP_663885.1 21455 R 382638 CDS YP_663886.1 109946658 4177219 complement(23101..23901) 1 NC_008229.1 conserved hypothetical protein; High confidence in function and specificity; hypothetical protein 23901 fragment 2 4177219 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663886.1 23101 R 382638 CDS YP_663887.1 109946659 4176337 complement(23963..24772) 1 NC_008229.1 membrane associated protein; High confidence in function and specificity; hypothetical protein 24772 fragment 1 4176337 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663887.1 23963 R 382638 CDS YP_663888.1 109946660 4177080 complement(24784..25887) 1 NC_008229.1 lipopolysaccharide 1,2-glucosyltransferase (rfaJ); High confidence in function and specificity; lipopolysaccharide biosynthesis protein 25887 rfaJ 4177080 rfaJ Helicobacter acinonychis str. Sheeba lipopolysaccharide biosynthesis protein YP_663888.1 24784 R 382638 CDS YP_663889.1 109946661 4176766 complement(25891..26691) 1 NC_008229.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 26691 miaA 4176766 miaA Helicobacter acinonychis str. Sheeba tRNA delta(2)-isopentenylpyrophosphate transferase YP_663889.1 25891 R 382638 CDS YP_663890.1 109946662 4176708 complement(26792..27133) 1 NC_008229.1 Specificity unclear; hypothetical protein 27133 4176708 Hac_0023 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663890.1 26792 R 382638 CDS YP_663891.1 109946663 4176709 27193..27639 1 NC_008229.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 27639 4176709 Hac_0024 Helicobacter acinonychis str. Sheeba 7-cyano-7-deazaguanine reductase YP_663891.1 27193 D 382638 CDS YP_663892.1 109946664 4176710 complement(32725..33159) 1 NC_008229.1 hypothetical protein 33159 4176710 Hac_0029 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663892.1 32725 R 382638 CDS YP_663893.1 109946665 4177617 complement(33765..34772) 1 NC_008229.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; High confidence in function and specificity; methicillin resistance protein 34772 llm 4177617 llm Helicobacter acinonychis str. Sheeba methicillin resistance protein YP_663893.1 33765 R 382638 CDS YP_663894.1 109946666 4176743 34902..35690 1 NC_008229.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 35690 pdxJ 4176743 pdxJ Helicobacter acinonychis str. Sheeba pyridoxine 5'-phosphate synthase YP_663894.1 34902 D 382638 CDS YP_663895.1 109946667 4176742 35692..36624 1 NC_008229.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 36624 pdxA 4176742 pdxA Helicobacter acinonychis str. Sheeba 4-hydroxythreonine-4-phosphate dehydrogenase YP_663895.1 35692 D 382638 CDS YP_663896.1 109946668 4176338 36694..37080 1 NC_008229.1 conserved hypothetical protein; High confidence in function and specificity; hypothetical protein 37080 fragment 1 4176338 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663896.1 36694 D 382638 CDS YP_663897.1 109946669 4177220 37047..37391 1 NC_008229.1 similar to jhp1463; Function unclear; hypothetical protein 37391 fragment 2 4177220 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663897.1 37047 D 382638 CDS YP_663898.1 109946670 4176469 complement(37610..37750) 1 NC_008229.1 outer membrane protein, fragment 4; hypothetical protein; hypothetical protein 37750 omp1 fragment 4 4176469 omp1 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663898.1 37610 R 382638 CDS YP_663899.1 109946671 4176468 complement(37807..38277) 1 NC_008229.1 outer membrane protein, fragment 3; hypothetical protein; hypothetical protein 38277 omp1 fragment 3 4176468 omp1 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663899.1 37807 R 382638 CDS YP_663900.1 109946672 4176467 complement(38337..38546) 1 NC_008229.1 outer membrane protein, fragment 2; hypothetical protein; hypothetical protein 38546 omp1 fragment 2 4176467 omp1 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663900.1 38337 R 382638 CDS YP_663901.1 109946673 4176466 complement(38662..39033) 1 NC_008229.1 outer membrane protein, fragment 1; hypothetical protein; hypothetical protein 39033 omp1 fragment 1 4176466 omp1 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663901.1 38662 R 382638 CDS YP_663902.1 109946674 4177259 complement(39328..40608) 1 NC_008229.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 40608 gltA 4177259 gltA Helicobacter acinonychis str. Sheeba type II citrate synthase YP_663902.1 39328 R 382638 CDS YP_663903.1 109946675 4177676 40811..42088 1 NC_008229.1 (Q9ZN36) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP); High confidence in function and specificity; isocitrate dehydrogenase 42088 icdA 4177676 icdA Helicobacter acinonychis str. Sheeba isocitrate dehydrogenase YP_663903.1 40811 D 382638 CDS YP_663904.1 109946676 4176711 42133..42651 1 NC_008229.1 similar to HP0028; Specificity unclear; hypothetical protein 42651 4176711 Hac_0042 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663904.1 42133 D 382638 CDS YP_663905.1 109946677 4177117 complement(42628..43284) 1 NC_008229.1 (Q9ZN34) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin synthase) (DTB synthetase) (DTBS); High confidence in function and specificity; hypothetical protein 43284 bioD 4177117 bioD Helicobacter acinonychis str. Sheeba hypothetical protein YP_663905.1 42628 R 382638 CDS YP_663906.1 109946678 4176712 43392..43805 1 NC_008229.1 Hypothetical protein similar to HP0031/JHP0027; High confidence in function and specificity; hypothetical protein 43805 4176712 Hac_0044 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663906.1 43392 D 382638 CDS YP_663907.1 109946679 4176160 43807..44082 1 NC_008229.1 similar to HP0032/JHP0028; Specificity unclear; hypothetical protein 44082 4176160 Hac_0045 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663907.1 43807 D 382638 CDS YP_663908.1 109946680 4176606 44082..46301 1 NC_008229.1 (P15716) ATP-dependent Clp protease ATP-binding subunit clpA; High confidence in function and specificity; ATP-dependent Clp protease, ATP-binding subunit ClpA 46301 clpA 4176606 clpA Helicobacter acinonychis str. Sheeba ATP-dependent Clp protease, ATP-binding subunit ClpA YP_663908.1 44082 D 382638 CDS YP_663909.1 109946681 4176733 46303..46641 1 NC_008229.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 46641 panD 4176733 panD Helicobacter acinonychis str. Sheeba aspartate alpha-decarboxylase YP_663909.1 46303 D 382638 CDS YP_663910.1 109946682 4176161 46652..46945 1 NC_008229.1 similar to HP0035/JHP0031; High confidence in function and specificity; hypothetical protein 46945 4176161 Hac_0048 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663910.1 46652 D 382638 CDS YP_663911.1 109946683 4176162 46945..47940 1 NC_008229.1 similar to HP0036; hypothetical protein; hypothetical protein 47940 4176162 Hac_0049 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663911.1 46945 D 382638 CDS YP_663912.1 109946684 4176163 47948..49012 1 NC_008229.1 similar to JHP0033; Function unclear; hypothetical protein 49012 4176163 Hac_0050 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663912.1 47948 D 382638 CDS YP_663913.1 109946685 4176891 49172..49915 1 NC_008229.1 (Q9ZDN8) Hypothetical protein RP289; Function unclear; ComB1 protein 49915 comB1 4176891 comB1 Helicobacter acinonychis str. Sheeba ComB1 protein YP_663913.1 49172 D 382638 CDS YP_663914.1 109946686 4176892 49915..50865 1 NC_008229.1 (P17799) VirB9 protein precursor; High confidence in function and specificity; ComB2 protein 50865 comB2 4176892 comB2 Helicobacter acinonychis str. Sheeba ComB2 protein YP_663914.1 49915 D 382638 CDS YP_663915.1 109946687 4176893 50858..51994 1 NC_008229.1 (P55406) Probable conjugal transfer protein trbI; High confidence in function and specificity; ComB3 protein 51994 comB3 4176893 comB3 Helicobacter acinonychis str. Sheeba ComB3 protein YP_663915.1 50858 D 382638 CDS YP_663916.1 109946688 4177707 52044..53471 1 NC_008229.1 (P26340) Mannose-1-phosphate guanylyltransferase [GDP] (EC 2.7.7.22) (GDP-mannose pyrophosphorylase) (GMP); High confidence in function and specificity; mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase 53471 algA 4177707 algA Helicobacter acinonychis str. Sheeba mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase YP_663916.1 52044 D 382638 CDS YP_663917.1 109946689 4177266 53481..54626 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 54626 gmd 4177266 gmd Helicobacter acinonychis str. Sheeba hypothetical protein YP_663917.1 53481 D 382638 CDS YP_663918.1 109946690 4176637 54619..55551 1 NC_008229.1 (P32055) GDP-L-fucose synthetase (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-35-epimerase-4-reductase); High confidence in function and specificity; GDP-fucose synthetase 55551 wbcJ 4176637 wbcJ Helicobacter acinonychis str. Sheeba GDP-fucose synthetase YP_663918.1 54619 D 382638 CDS YP_663919.1 109946691 4176678 complement(56017..56844) 1 NC_008229.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 56844 tyrA 4176678 tyrA Helicobacter acinonychis str. Sheeba prephenate dehydrogenase YP_663919.1 56017 R 382638 CDS YP_663920.1 109946692 4177618 complement(56846..59341) 1 NC_008229.1 High confidence in function and specificity; ATP-dependent protease La 59341 lon 4177618 lon Helicobacter acinonychis str. Sheeba ATP-dependent protease La YP_663920.1 56846 R 382638 CDS YP_663921.1 109946693 4176895 complement(59382..60035) 1 NC_008229.1 (Q9L7A6) Hypothetical lipoprotein HD0470 precursor; High confidence in function and specificity; competence lipoprotein 60035 comL 4176895 comL Helicobacter acinonychis str. Sheeba competence lipoprotein YP_663921.1 59382 R 382638 CDS YP_663922.1 109946694 4176164 60252..60641 1 NC_008229.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 60641 4176164 Hac_0061 Helicobacter acinonychis str. Sheeba flagellar assembly protein FliW YP_663922.1 60252 D 382638 CDS YP_663923.1 109946695 4177412 60812..61288 1 NC_008229.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 61288 fabZ 4177412 fabZ Helicobacter acinonychis str. Sheeba (3R)-hydroxymyristoyl-ACP dehydratase YP_663923.1 60812 D 382638 CDS YP_663924.1 109946696 4177620 61291..62103 1 NC_008229.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 62103 lpxA 4177620 lpxA Helicobacter acinonychis str. Sheeba UDP-N-acetylglucosamine acyltransferase YP_663924.1 61291 D 382638 CDS YP_663925.1 109946697 4176889 62105..63415 1 NC_008229.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 63415 clpX 4176889 clpX Helicobacter acinonychis str. Sheeba ATP-dependent protease ATP-binding subunit ClpX YP_663925.1 62105 D 382638 CDS YP_663926.1 109946698 4176726 63468..64511 1 NC_008229.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 64511 mreB 4176726 mreB Helicobacter acinonychis str. Sheeba rod shape-determining protein MreB YP_663926.1 63468 D 382638 CDS YP_663927.1 109946699 4176727 64516..65262 1 NC_008229.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 65262 mreC 4176727 mreC Helicobacter acinonychis str. Sheeba rod shape-determining protein MreC YP_663927.1 64516 D 382638 CDS YP_663928.1 109946700 4176339 65307..66404 1 NC_008229.1 (P32678) Protein yijP,similar to JHP1312; High confidence in function and specificity; metal-dependent hydrolase fragment 1 66404 fragment 1 4176339 fragment 1 Helicobacter acinonychis str. Sheeba metal-dependent hydrolase fragment 1 YP_663928.1 65307 D 382638 CDS YP_663929.1 109946701 4177221 66385..66969 1 NC_008229.1 similar to JHP1312; Function unclear; metal-dependent hydrolase fragment 2 66969 fragment 2 4177221 fragment 2 Helicobacter acinonychis str. Sheeba metal-dependent hydrolase fragment 2 YP_663929.1 66385 D 382638 CDS YP_663930.1 109946702 4176462 complement(67196..68383) 1 NC_008229.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 68383 nusA 4176462 nusA Helicobacter acinonychis str. Sheeba transcription elongation factor NusA YP_663930.1 67196 R 382638 CDS YP_663931.1 109946703 4177173 complement(68449..69627) 1 NC_008229.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 69627 selA 4177173 selA Helicobacter acinonychis str. Sheeba selenocysteine synthase YP_663931.1 68449 R 382638 CDS YP_663932.1 109946704 4176521 complement(69844..72435) 1 NC_008229.1 Function unclear; iron-regulated outer membrane protein 72435 frpB 4176521 frpB Helicobacter acinonychis str. Sheeba iron-regulated outer membrane protein YP_663932.1 69844 R 382638 CDS YP_663933.1 109946705 4176165 complement(72588..72914) 1 NC_008229.1 similar to HP1511; Function unclear; hypothetical protein 72914 4176165 Hac_0073 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663933.1 72588 R 382638 CDS YP_663934.1 109946706 4177508 complement(72898..73251) 1 NC_008229.1 (P46362) Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA); Function unclear; hypothetical protein 73251 folB 4177508 folB Helicobacter acinonychis str. Sheeba hypothetical protein YP_663934.1 72898 R 382638 CDS YP_663935.1 109946707 4176166 complement(73248..73910) 1 NC_008229.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 73910 4176166 Hac_0075 Helicobacter acinonychis str. Sheeba glycerol-3-phosphate acyltransferase PlsY YP_663935.1 73248 R 382638 CDS YP_663936.1 109946708 4176167 74014..75384 1 NC_008229.1 similar to HP1508; Specificity unclear; ferredoxin-like protein 75384 4176167 Hac_0076 Helicobacter acinonychis str. Sheeba ferredoxin-like protein YP_663936.1 74014 D 382638 CDS YP_663937.1 109946709 4177627 complement(75393..76592) 1 NC_008229.1 (Q9P4R4) Saccharopine dehydrogenase [NADP+ L-glutamate forming] (EC 1.5.1.10) (Saccharopine reductase),similar to HP1507; Function unclear; hypothetical protein 76592 lys1 4177627 lys1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663937.1 75393 R 382638 CDS YP_663938.1 109946710 4177261 76679..77905 1 NC_008229.1 (P45240) Sodium/glutamate symport carrier protein (Glutamate permease),similar to HP1506; High confidence in function and specificity; sodium/glutamate symport carrier protein 77905 gltS 4177261 gltS Helicobacter acinonychis str. Sheeba sodium/glutamate symport carrier protein YP_663938.1 76679 D 382638 CDS YP_663939.1 109946711 4177089 77902..78936 1 NC_008229.1 (O24750) Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)]; High confidence in function and specificity; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 78936 ribD 4177089 ribD Helicobacter acinonychis str. Sheeba diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_663939.1 77902 D 382638 CDS YP_663940.1 109946712 4176168 78918..79634 1 NC_008229.1 similar to HP1504; Specificity unclear; hypothetical protein 79634 4176168 Hac_0080 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663940.1 78918 D 382638 CDS YP_663941.1 109946713 4176896 79645..81984 1 NC_008229.1 (Q8Z8S4) Copper-transporting P-type ATPase (EC 3.6.3.4); High confidence in function and specificity; cation transporter E1-E2 family ATPase 81984 copA 4176896 copA Helicobacter acinonychis str. Sheeba cation transporter E1-E2 family ATPase YP_663941.1 79645 D 382638 CDS YP_663942.1 109946714 4177672 complement(82141..83139) 1 NC_008229.1 (P42034) Hydrogenase expression/formation protein hypE; High confidence in function and specificity; hydrogenase expression/formation protein 83139 hypE 4177672 hypE Helicobacter acinonychis str. Sheeba hydrogenase expression/formation protein YP_663942.1 82141 R 382638 CDS YP_663943.1 109946715 4177673 complement(83142..85394) 1 NC_008229.1 HypF family transcriptional regulator,similar to HP0048; High confidence in function and specificity; HypF family transcriptional regulator 85394 hypF 4177673 hypF Helicobacter acinonychis str. Sheeba HypF family transcriptional regulator YP_663943.1 83142 R 382638 CDS YP_663944.1 109946716 4176169 complement(85391..86383) 1 NC_008229.1 similar to HP0049; Function unclear; hypothetical protein 86383 4176169 Hac_0084 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663944.1 85391 R 382638 CDS YP_663945.1 109946717 4176377 complement(86453..86668) 1 NC_008229.1 (O30569) Modification methylase SmeIP (EC 2.1.1.72) (Adenine-specific methyltransferase SmeIP) (M.SmeI) (M.CcrMI); hypothetical protein; adenine specific DNA methyltransferase fragment 3 86668 dpnA fragment 3 4176377 dpnA fragment 3 Helicobacter acinonychis str. Sheeba adenine specific DNA methyltransferase fragment 3 YP_663945.1 86453 R 382638 CDS YP_663946.1 109946718 4176376 complement(86708..86815) 1 NC_008229.1 adenine specific DNA methyltransferase fragment 2 86815 dpnA fragment 2 4176376 dpnA fragment 2 Helicobacter acinonychis str. Sheeba adenine specific DNA methyltransferase fragment 2 YP_663946.1 86708 R 382638 CDS YP_663947.1 109946719 4176375 complement(86988..87089) 1 NC_008229.1 dpnA fragment; hypothetical protein; adenine specific DNA methyltransferase fragment 1 87089 dpnA fragment 1 4176375 dpnA fragment 1 Helicobacter acinonychis str. Sheeba adenine specific DNA methyltransferase fragment 1 YP_663947.1 86988 R 382638 CDS YP_663948.1 109946720 4177121 complement(87152..87319) 1 NC_008229.1 (P34881) DNA (cytosine-5)-methyltransferase AthI (EC 2.1.1.37) (DNA methyltransferase AthI) (DNA Metase AthI) (M.AthI); hypothetical protein; cytosine specific DNA methyltransferase fragment 4 87319 DDEM fragment 4 4177121 DDEM fragment 4 Helicobacter acinonychis str. Sheeba cytosine specific DNA methyltransferase fragment 4 YP_663948.1 87152 R 382638 CDS YP_663949.1 109946721 4176412 complement(87354..87605) 1 NC_008229.1 (P05302) Modification methylase DdeI (EC 2.1.1.37) (Cytosine-specific methyltransferase DdeI) (M.DdeI); hypothetical protein; cytosine specific DNA methyltransferase fragment 3 87605 DDEM fragment 3 4176412 DDEM fragment 3 Helicobacter acinonychis str. Sheeba cytosine specific DNA methyltransferase fragment 3 YP_663949.1 87354 R 382638 CDS YP_663950.1 109946722 4176411 complement(87595..87900) 1 NC_008229.1 (P50192) Modification methylase HphIA (EC 2.1.1.37) (Cytosine-specific methyltransferase HphIA) (M.HphIA) (M.Hphi(C)); hypothetical protein; cytosine specific DNA methyltransferase fragment 2 87900 DDEM fragment 2 4176411 DDEM fragment 2 Helicobacter acinonychis str. Sheeba cytosine specific DNA methyltransferase fragment 2 YP_663950.1 87595 R 382638 CDS YP_663951.1 109946723 4176410 complement(87983..88228) 1 NC_008229.1 (P94147) Modification methylase AgeI (EC 2.1.1.37) (Cytosine-specific methyltransferase AgeI) (M.AgeI); hypothetical protein; cytosine specific DNA methyltransferase fragment 1 88228 DDEM fragment 1 4176410 DDEM fragment 1 Helicobacter acinonychis str. Sheeba cytosine specific DNA methyltransferase fragment 1 YP_663951.1 87983 R 382638 CDS YP_663952.1 109946724 4176170 88497..89654 1 NC_008229.1 Region start changed from 88584 to 88497 (87 bases); outer membrane protein 2 89654 4176170 Hac_0095 Helicobacter acinonychis str. Sheeba outer membrane protein 2 YP_663952.1 88497 D 382638 CDS YP_663953.1 109946725 4176171 complement(89973..91412) 1 NC_008229.1 Function unclear; hypothetical protein 91412 4176171 Hac_0096 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663953.1 89973 R 382638 CDS YP_663954.1 109946726 4176172 complement(91509..92543) 1 NC_008229.1 similar to HP1284; High confidence in function and specificity; hypothetical protein 92543 4176172 Hac_0097 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663954.1 91509 R 382638 CDS YP_663955.1 109946727 4176173 complement(92599..93375) 1 NC_008229.1 similar to HP1285; Specificity unclear; hypothetical protein 93375 4176173 Hac_0098 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663955.1 92599 R 382638 CDS YP_663956.1 109946728 4176174 93524..94072 1 NC_008229.1 similar to HP1286; High confidence in function and specificity; hypothetical protein 94072 4176174 Hac_0099 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663956.1 93524 D 382638 CDS YP_663957.1 109946729 4176175 94509..94691 1 NC_008229.1 hypothetical protein 94691 4176175 Hac_0101 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663957.1 94509 D 382638 CDS YP_663958.1 109946730 4177651 complement(94952..95731) 1 NC_008229.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 95731 murB 4177651 murB Helicobacter acinonychis str. Sheeba UDP-N-acetylenolpyruvoylglucosamine reductase YP_663958.1 94952 R 382638 CDS YP_663959.1 109946731 4177503 complement(95735..96001) 1 NC_008229.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 96001 fliQ 4177503 fliQ Helicobacter acinonychis str. Sheeba flagellar biosynthesis protein FliQ YP_663959.1 95735 R 382638 CDS YP_663960.1 109946732 4177499 complement(96012..97316) 1 NC_008229.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 97316 fliI 4177499 fliI Helicobacter acinonychis str. Sheeba flagellum-specific ATP synthase YP_663960.1 96012 R 382638 CDS YP_663961.1 109946733 4176633 complement(97317..98231) 1 NC_008229.1 Function unclear; virB11 protein 98231 virB11 4176633 virB11 Helicobacter acinonychis str. Sheeba virB11 protein YP_663961.1 97317 R 382638 CDS YP_663962.1 109946734 4177677 complement(98248..101013) 1 NC_008229.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 101013 ileS 4177677 ileS Helicobacter acinonychis str. Sheeba isoleucyl-tRNA synthetase YP_663962.1 98248 R 382638 CDS YP_663963.1 109946735 4176176 complement(101041..101298) 1 NC_008229.1 Hypothetical protein similar to HP1423/JHP1318; High confidence in function and specificity; hypothetical protein 101298 4176176 Hac_0109 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663963.1 101041 R 382638 CDS YP_663964.1 109946736 4176177 101400..102026 1 NC_008229.1 similar to HP1424; hypothetical protein; hypothetical protein 102026 4176177 Hac_0110 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663964.1 101400 D 382638 CDS YP_663965.1 109946737 4176178 complement(102492..102740) 1 NC_008229.1 hypothetical protein 102740 4176178 Hac_0111 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663965.1 102492 R 382638 CDS YP_663966.1 109946738 4176138 102975..103790 1 NC_008229.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 103790 ksgA 4176138 ksgA Helicobacter acinonychis str. Sheeba dimethyladenosine transferase YP_663966.1 102975 D 382638 CDS YP_663967.1 109946739 4176179 103827..105893 1 NC_008229.1 Hypothetical protein similar to HP1430; Specificity unclear; hypothetical protein 105893 4176179 Hac_0114 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663967.1 103827 D 382638 CDS YP_663968.1 109946740 4176180 105877..106866 1 NC_008229.1 Hypothetical protein similar to HP1429; High confidence in function and specificity; hypothetical protein 106866 4176180 Hac_0115 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663968.1 105877 D 382638 CDS YP_663969.1 109946741 4176181 106863..107924 1 NC_008229.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 107924 4176181 Hac_0116 Helicobacter acinonychis str. Sheeba ribosomal RNA large subunit methyltransferase N YP_663969.1 106863 D 382638 CDS YP_663970.1 109946742 4176182 complement(108112..108477) 1 NC_008229.1 hypothetical protein 108477 4176182 Hac_0118 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663970.1 108112 R 382638 CDS YP_663971.1 109946743 4176753 complement(108593..109156) 1 NC_008229.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 109156 maf 4176753 maf Helicobacter acinonychis str. Sheeba Maf-like protein YP_663971.1 108593 R 382638 CDS YP_663972.1 109946744 4177705 complement(109158..111701) 1 NC_008229.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 111701 alaS 4177705 alaS Helicobacter acinonychis str. Sheeba alanyl-tRNA synthetase YP_663972.1 109158 R 382638 CDS YP_663973.1 109946745 4176183 111819..112049 1 NC_008229.1 similar to HP1242; Function unclear; hypothetical protein 112049 4176183 Hac_0122 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663973.1 111819 D 382638 CDS YP_663974.1 109946746 4176594 complement(112333..113385) 1 NC_008229.1 (P14532) Cytochrome c551 peroxidase precursor (EC 1.11.1.5) (Cytochrome c peroxidase) (CCP); High confidence in function and specificity; cytochrome c551 peroxidase 113385 ccpA 4176594 ccpA Helicobacter acinonychis str. Sheeba cytochrome c551 peroxidase YP_663974.1 112333 R 382638 CDS YP_663975.1 109946747 4177132 113552..117181 1 NC_008229.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 117181 dnaE 4177132 dnaE Helicobacter acinonychis str. Sheeba DNA polymerase III subunit alpha YP_663975.1 113552 D 382638 CDS YP_663976.1 109946748 4177710 117178..117942 1 NC_008229.1 (P55986) Hypothetical pseudouridine synthase HP1459 (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase); High confidence in function and specificity; pseudouridylate synthase 117942 yciL 4177710 yciL Helicobacter acinonychis str. Sheeba pseudouridylate synthase YP_663976.1 117178 D 382638 CDS YP_663977.1 109946749 4176671 118006..118320 1 NC_008229.1 (P48384) Thioredoxin M-type chloroplast precursor (TRX-M); Function unclear; thioredoxin 118320 trxA 4176671 trxA Helicobacter acinonychis str. Sheeba thioredoxin YP_663977.1 118006 D 382638 CDS YP_663978.1 109946750 4176184 118570..118728 1 NC_008229.1 hypothetical protein 118728 4176184 Hac_0127 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663978.1 118570 D 382638 CDS YP_663979.1 109946751 4176185 118755..118931 1 NC_008229.1 hypothetical protein 118931 4176185 Hac_0128 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663979.1 118755 D 382638 CDS YP_663980.1 109946752 4176186 119031..119390 1 NC_008229.1 hypothetical protein 119390 4176186 Hac_0129 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663980.1 119031 D 382638 CDS YP_663981.1 109946753 4176187 119542..119703 1 NC_008229.1 hypothetical protein 119703 4176187 Hac_0130 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663981.1 119542 D 382638 CDS YP_663982.1 109946754 4177017 119764..121155 1 NC_008229.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 121155 fumC 4177017 fumC Helicobacter acinonychis str. Sheeba fumarate hydratase YP_663982.1 119764 D 382638 CDS YP_663983.1 109946755 4177096 121877..122458 1 NC_008229.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 122458 rnhB 4177096 rnhB Helicobacter acinonychis str. Sheeba ribonuclease HII YP_663983.1 121877 D 382638 CDS YP_663984.1 109946756 4176188 complement(122455..123042) 1 NC_008229.1 hypothetical protein 123042 4176188 Hac_0133 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663984.1 122455 R 382638 CDS YP_663985.1 109946757 4176189 complement(123262..124350) 1 NC_008229.1 similar to HP1321; Specificity unclear; hypothetical protein 124350 4176189 Hac_0134 Helicobacter acinonychis str. Sheeba hypothetical protein YP_663985.1 123262 R 382638 CDS YP_663986.1 109946758 4177150 124560..124874 1 NC_008229.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 124874 rpsJ 4177150 rpsJ Helicobacter acinonychis str. Sheeba 30S ribosomal protein S10 YP_663986.1 124560 D 382638 CDS YP_663987.1 109946759 4176836 124908..125483 1 NC_008229.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 125483 rplC 4176836 rplC Helicobacter acinonychis str. Sheeba 50S ribosomal protein L3 YP_663987.1 124908 D 382638 CDS YP_663988.1 109946760 4176837 125517..126164 1 NC_008229.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 126164 rplD 4176837 rplD Helicobacter acinonychis str. Sheeba 50S ribosomal protein L4 YP_663988.1 125517 D 382638 CDS YP_663989.1 109946761 4176853 126168..126449 1 NC_008229.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 126449 rplW 4176853 rplW Helicobacter acinonychis str. Sheeba 50S ribosomal protein L23 YP_663989.1 126168 D 382638 CDS YP_663990.1 109946762 4176835 126465..127295 1 NC_008229.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 127295 rplB 4176835 rplB Helicobacter acinonychis str. Sheeba 50S ribosomal protein L2 YP_663990.1 126465 D 382638 CDS YP_663991.1 109946763 4177158 127307..127588 1 NC_008229.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 127588 rpsS 4177158 rpsS Helicobacter acinonychis str. Sheeba 30S ribosomal protein S19 YP_663991.1 127307 D 382638 CDS YP_663992.1 109946764 4176852 127598..127966 1 NC_008229.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 127966 rplV 4176852 rplV Helicobacter acinonychis str. Sheeba 50S ribosomal protein L22 YP_663992.1 127598 D 382638 CDS YP_663993.1 109946765 4177143 127970..128674 1 NC_008229.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 128674 rpsC 4177143 rpsC Helicobacter acinonychis str. Sheeba 30S ribosomal protein S3 YP_663993.1 127970 D 382638 CDS YP_663994.1 109946766 4176847 128677..129102 1 NC_008229.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 129102 rplP 4176847 rplP Helicobacter acinonychis str. Sheeba 50S ribosomal protein L16 YP_663994.1 128677 D 382638 CDS YP_663995.1 109946767 4176858 129104..129289 1 NC_008229.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 129289 rpmC 4176858 rpmC Helicobacter acinonychis str. Sheeba 50S ribosomal protein L29 YP_663995.1 129104 D 382638 CDS YP_663996.1 109946768 4177156 129303..129563 1 NC_008229.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 129563 rpsQ 4177156 rpsQ Helicobacter acinonychis str. Sheeba 30S ribosomal protein S17 YP_663996.1 129303 D 382638 CDS YP_663997.1 109946769 4176845 129566..129934 1 NC_008229.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 129934 rplN 4176845 rplN Helicobacter acinonychis str. Sheeba 50S ribosomal protein L14 YP_663997.1 129566 D 382638 CDS YP_663998.1 109946770 4176854 129934..130155 1 NC_008229.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 130155 rplX 4176854 rplX Helicobacter acinonychis str. Sheeba 50S ribosomal protein L24 YP_663998.1 129934 D 382638 CDS YP_663999.1 109946771 4176838 130167..130712 1 NC_008229.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 130712 rplE 4176838 rplE Helicobacter acinonychis str. Sheeba 50S ribosomal protein L5 YP_663999.1 130167 D 382638 CDS YP_003856780.1 304348723 9711836 130722..130907 1 NC_008229.1 30S ribosomal protein S14 130907 9711836 Hac_1800 Helicobacter acinonychis str. Sheeba 30S ribosomal protein S14 YP_003856780.1 130722 D 382638 CDS YP_664000.1 109946772 4177148 130917..131312 1 NC_008229.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 131312 rpsH 4177148 rpsH Helicobacter acinonychis str. Sheeba 30S ribosomal protein S8 YP_664000.1 130917 D 382638 CDS YP_664001.1 109946773 4176839 131323..131859 1 NC_008229.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 131859 rplF 4176839 rplF Helicobacter acinonychis str. Sheeba 50S ribosomal protein L6 YP_664001.1 131323 D 382638 CDS YP_664002.1 109946774 4176849 131873..132229 1 NC_008229.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 132229 rplR 4176849 rplR Helicobacter acinonychis str. Sheeba 50S ribosomal protein L18 YP_664002.1 131873 D 382638 CDS YP_664003.1 109946775 4177145 132226..132687 1 NC_008229.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 132687 rpsE 4177145 rpsE Helicobacter acinonychis str. Sheeba 30S ribosomal protein S5 YP_664003.1 132226 D 382638 CDS YP_664004.1 109946776 4176846 132705..133106 1 NC_008229.1 late assembly protein; 50S ribosomal protein L15 133106 rplO 4176846 rplO Helicobacter acinonychis str. Sheeba 50S ribosomal protein L15 YP_664004.1 132705 D 382638 CDS YP_664005.1 109946777 4177172 133149..134411 1 NC_008229.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 134411 secY 4177172 secY Helicobacter acinonychis str. Sheeba preprotein translocase subunit SecY YP_664005.1 133149 D 382638 CDS YP_664006.1 109946778 4176754 134411..135172 1 NC_008229.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 135172 map 4176754 map Helicobacter acinonychis str. Sheeba methionine aminopeptidase YP_664006.1 134411 D 382638 CDS YP_664007.1 109946779 4177680 135172..135390 1 NC_008229.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 135390 infA 4177680 infA Helicobacter acinonychis str. Sheeba translation initiation factor IF-1 YP_664007.1 135172 D 382638 CDS YP_664008.1 109946780 4177153 135585..135947 1 NC_008229.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 135947 rpsM 4177153 rpsM Helicobacter acinonychis str. Sheeba 30S ribosomal protein S13 YP_664008.1 135585 D 382638 CDS YP_664009.1 109946781 4177151 135971..136366 1 NC_008229.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 136366 rpsK 4177151 rpsK Helicobacter acinonychis str. Sheeba 30S ribosomal protein S11 YP_664009.1 135971 D 382638 CDS YP_664010.1 109946782 4177144 136376..137002 1 NC_008229.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 137002 rpsD 4177144 rpsD Helicobacter acinonychis str. Sheeba 30S ribosomal protein S4 YP_664010.1 136376 D 382638 CDS YP_664011.1 109946783 4176862 137014..138048 1 NC_008229.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 138048 rpoA 4176862 rpoA Helicobacter acinonychis str. Sheeba DNA-directed RNA polymerase subunit alpha YP_664011.1 137014 D 382638 CDS YP_664012.1 109946784 4176848 138048..138398 1 NC_008229.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 138398 rplQ 4176848 rplQ Helicobacter acinonychis str. Sheeba 50S ribosomal protein L17 YP_664012.1 138048 D 382638 CDS YP_664013.1 109946785 4176190 138736..140208 1 NC_008229.1 similar to HP0018; Function unclear; hypothetical protein 140208 4176190 Hac_0162 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664013.1 138736 D 382638 CDS YP_664014.1 109946786 4176191 140221..140856 1 NC_008229.1 similar to HP1457; Function unclear; hypothetical protein 140856 4176191 Hac_0163 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664014.1 140221 D 382638 CDS YP_664015.1 109946787 4177619 140878..141408 1 NC_008229.1 (P53436) LPP20 lipoprotein precursor,similar to HP1456; High confidence in function and specificity; lipoprotein 141408 lpp20 4177619 lpp20 Helicobacter acinonychis str. Sheeba lipoprotein YP_664015.1 140878 D 382638 CDS YP_664016.1 109946788 4176192 141415..141771 1 NC_008229.1 similar to HP1455; hypothetical protein; hypothetical protein 141771 4176192 Hac_0165 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664016.1 141415 D 382638 CDS YP_664017.1 109946789 4176193 141771..142673 1 NC_008229.1 similar to HP1454; hypothetical protein; hypothetical protein 142673 4176193 Hac_0166 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664017.1 141771 D 382638 CDS YP_664018.1 109946790 4177474 complement(142790..144142) 1 NC_008229.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 144142 trmE 4177474 trmE Helicobacter acinonychis str. Sheeba tRNA modification GTPase TrmE YP_664018.1 142790 R 382638 CDS YP_664019.1 109946791 4176194 complement(144135..144947) 1 NC_008229.1 similar to HP1451; hypothetical protein; hypothetical protein 144947 4176194 Hac_0168 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664019.1 144135 R 382638 CDS YP_664020.1 109946792 4176195 complement(144958..146598) 1 NC_008229.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 146598 4176195 Hac_0169 Helicobacter acinonychis str. Sheeba inner membrane protein translocase component YidC YP_664020.1 144958 R 382638 CDS YP_664021.1 109946793 4176196 complement(146604..146921) 1 NC_008229.1 similar to HP1449; High confidence in function and specificity; hypothetical protein 146921 4176196 Hac_0170 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664021.1 146604 R 382638 CDS YP_664022.1 109946794 4177097 complement(146932..147393) 1 NC_008229.1 (Q9ZJH0) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP protein) (RNase P protein) (Protein C5); High confidence in function and specificity; ribonuclease P protein component 147393 rnpA 4177097 rnpA Helicobacter acinonychis str. Sheeba ribonuclease P protein component YP_664022.1 146932 R 382638 CDS YP_664023.1 109946795 4177403 complement(147572..147967) 1 NC_008229.1 (O25987) biopolymer transport exbD-like protein; High confidence in function and specificity; hypothetical protein 147967 exbD 4177403 exbD Helicobacter acinonychis str. Sheeba hypothetical protein YP_664023.1 147572 R 382638 CDS YP_664024.1 109946796 4177400 complement(147978..148430) 1 NC_008229.1 (Q9ZJH1) biopolymer transport exbB-like protein; High confidence in function and specificity; biopolymer transport protein 148430 exbB 4177400 exbB Helicobacter acinonychis str. Sheeba biopolymer transport protein YP_664024.1 147978 R 382638 CDS YP_664025.1 109946797 4177458 complement(148433..148891) 1 NC_008229.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 148891 smpB 4177458 smpB Helicobacter acinonychis str. Sheeba SsrA-binding protein YP_664025.1 148433 R 382638 CDS YP_664026.1 109946798 4177683 complement(148888..149694) 1 NC_008229.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 149694 ipk 4177683 ipk Helicobacter acinonychis str. Sheeba 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_664026.1 148888 R 382638 CDS YP_664027.1 109946799 4176902 complement(149691..149921) 1 NC_008229.1 affects carbohydrate metabolism, has regulatory role in many processes; carbon storage regulator 149921 csrA 4176902 csrA Helicobacter acinonychis str. Sheeba carbon storage regulator YP_664027.1 149691 R 382638 CDS YP_664028.1 109946800 4176553 complement(149934..150422) 1 NC_008229.1 (Q9ZJH5) Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); High confidence in function and specificity; peptidyl-prolyl cis-trans isomerase 150422 ppi 4176553 ppi Helicobacter acinonychis str. Sheeba peptidyl-prolyl cis-trans isomerase YP_664028.1 149934 R 382638 CDS YP_664029.1 109946801 4176197 150551..151330 1 NC_008229.1 hypothetical protein 151330 4176197 Hac_0178 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664029.1 150551 D 382638 CDS YP_664030.1 109946802 4176198 complement(153445..153879) 1 NC_008229.1 hypothetical protein 153879 4176198 Hac_0179 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664030.1 153445 R 382638 CDS YP_664031.1 109946803 4176516 complement(154245..154412) 1 NC_008229.1 restriction enzyme fragment 5 154412 fragment 5 4176516 fragment 5 Helicobacter acinonychis str. Sheeba restriction enzyme fragment 5 YP_664031.1 154245 R 382638 CDS YP_664032.1 109946804 4177296 complement(154535..154717) 1 NC_008229.1 restriction enzyme fragment 4 154717 fragment 4 4177296 fragment 4 Helicobacter acinonychis str. Sheeba restriction enzyme fragment 4 YP_664032.1 154535 R 382638 CDS YP_664033.1 109946805 4177042 complement(154714..154866) 1 NC_008229.1 restriction enzyme fragment 3 154866 fragment 3 4177042 fragment 3 Helicobacter acinonychis str. Sheeba restriction enzyme fragment 3 YP_664033.1 154714 R 382638 CDS YP_664034.1 109946806 4177222 complement(154899..155105) 1 NC_008229.1 fragmented gene homologous to HP1371; hypothetical protein; restriction enzyme fragment 2 155105 fragment 2 4177222 fragment 2 Helicobacter acinonychis str. Sheeba restriction enzyme fragment 2 YP_664034.1 154899 R 382638 CDS YP_664035.1 109946807 4176340 complement(155135..155251) 1 NC_008229.1 restriction enzyme fragment 1 155251 fragment 1 4176340 fragment 1 Helicobacter acinonychis str. Sheeba restriction enzyme fragment 1 YP_664035.1 155135 R 382638 CDS YP_664036.1 109946808 4176297 155403..156275 1 NC_008229.1 (Q58392) Modification methylase MjaI (EC 2.1.1.113) (N-4 cytosine-specific methyltransferase MjaI) (M.MjaI); High confidence in function and specificity; modification methylase mjai 156275 4176297 Hac_0185 Helicobacter acinonychis str. Sheeba modification methylase mjai YP_664036.1 155403 D 382638 CDS YP_664037.1 109946809 4176716 156268..156540 1 NC_008229.1 (P23192) Modification methylase MboII (EC 2.1.1.72) (Adenine-specific methyltransferase MboII) (M.MboII); High confidence in function and specificity; type IIS restriction enzyme M1 protein fragment 1 156540 mod fragment 1 4176716 mod fragment 1 Helicobacter acinonychis str. Sheeba type IIS restriction enzyme M1 protein fragment 1 YP_664037.1 156268 D 382638 CDS YP_664038.1 109946810 4176719 156528..157043 1 NC_008229.1 (P23192) Modification methylase MboII (EC 2.1.1.72) (Adenine-specific methyltransferase MboII) (M.MboII); High confidence in function and specificity; type IIS restriction enzyme M1 protein fragment 2 157043 mod fragment 2 4176719 mod fragment 2 Helicobacter acinonychis str. Sheeba type IIS restriction enzyme M1 protein fragment 2 YP_664038.1 156528 D 382638 CDS YP_664039.1 109946811 4176298 157172..158341 1 NC_008229.1 (P23191) Type IIS restriction enzyme MboII (EC 3.1.21.4) (Endonuclease MboII) (R.MboII); High confidence in function and specificity; typeIIS restriction enzyme 158341 4176298 Hac_0188 Helicobacter acinonychis str. Sheeba typeIIS restriction enzyme YP_664039.1 157172 D 382638 CDS YP_664040.1 109946812 4176299 158782..159423 1 NC_008229.1 Function unclear; two-component regulator 159423 4176299 Hac_0190 Helicobacter acinonychis str. Sheeba two-component regulator YP_664040.1 158782 D 382638 CDS YP_664041.1 109946813 4176300 159479..160591 1 NC_008229.1 Specificity unclear; signal-transducing protein, histidine kinase 160591 4176300 Hac_0191 Helicobacter acinonychis str. Sheeba signal-transducing protein, histidine kinase YP_664041.1 159479 D 382638 CDS YP_664042.1 109946814 4176301 160594..161988 1 NC_008229.1 similar to HP1363; Specificity unclear; hypothetical protein 161988 4176301 Hac_0192 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664042.1 160594 D 382638 CDS YP_664043.1 109946815 4177131 162000..163460 1 NC_008229.1 unwinds double stranded DNA; replicative DNA helicase 163460 dnaB 4177131 dnaB Helicobacter acinonychis str. Sheeba replicative DNA helicase YP_664043.1 162000 D 382638 CDS YP_664044.1 109946816 4176894 163457..164773 1 NC_008229.1 (P51973) Competence protein comE3, DNA transfer protein; High confidence in function and specificity; DNA transfer protein ComE 164773 comE 4176894 comE Helicobacter acinonychis str. Sheeba DNA transfer protein ComE YP_664044.1 163457 D 382638 CDS YP_664045.1 109946817 4176680 164844..165728 1 NC_008229.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 165728 ubiA 4176680 ubiA Helicobacter acinonychis str. Sheeba prenyltransferase YP_664045.1 164844 D 382638 CDS YP_664046.1 109946818 4176302 165730..166215 1 NC_008229.1 similar to HP1359; hypothetical protein; hypothetical protein 166215 4176302 Hac_0196 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664046.1 165730 D 382638 CDS YP_664047.1 109946819 4176303 166228..166734 1 NC_008229.1 similar to HP1358; hypothetical protein; hypothetical protein 166734 4176303 Hac_0197 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664047.1 166228 D 382638 CDS YP_664048.1 109946820 4176569 166728..167531 1 NC_008229.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 167531 psd 4176569 psd Helicobacter acinonychis str. Sheeba phosphatidylserine decarboxylase YP_664048.1 166728 D 382638 CDS YP_664049.1 109946821 4177662 167521..168531 1 NC_008229.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 168531 nadA 4177662 nadA Helicobacter acinonychis str. Sheeba quinolinate synthetase YP_664049.1 167521 D 382638 CDS YP_664050.1 109946822 4177663 168531..169352 1 NC_008229.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 169352 nadC 4177663 nadC Helicobacter acinonychis str. Sheeba nicotinate-nucleotide pyrophosphorylase YP_664050.1 168531 D 382638 CDS YP_664051.1 109946823 4176341 169378..171972 1 NC_008229.1 (Q47282) Type I restriction enzyme EcoEI M protein (EC 2.1.1.72) (M.EcoEI); hypothetical protein; adenine specific DNA methyltransferase fragment 1 171972 fragment 1 4176341 fragment 1 Helicobacter acinonychis str. Sheeba adenine specific DNA methyltransferase fragment 1 YP_664051.1 169378 D 382638 CDS YP_664052.1 109946824 4177223 172032..172733 1 NC_008229.1 adenine specific DNA methyltransferase fragment 2 172733 fragment 2 4177223 fragment 2 Helicobacter acinonychis str. Sheeba adenine specific DNA methyltransferase fragment 2 YP_664052.1 172032 D 382638 CDS YP_664053.1 109946825 4176304 173153..173458 1 NC_008229.1 hypothetical protein 173458 4176304 Hac_0204 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664053.1 173153 D 382638 CDS YP_664054.1 109946826 4176305 173498..173992 1 NC_008229.1 hypothetical protein 173992 4176305 Hac_0205 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664054.1 173498 D 382638 CDS YP_664055.1 109946827 4176786 174178..174840 1 NC_008229.1 (Q57425) Hypothetical protein HI1077.1; High confidence in function and specificity; hypothetical protein 174840 pnuC 4176786 pnuC Helicobacter acinonychis str. Sheeba hypothetical protein YP_664055.1 174178 D 382638 CDS YP_664056.1 109946828 4176306 174837..175439 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 175439 4176306 Hac_0207 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664056.1 174837 D 382638 CDS YP_664057.1 109946829 4176307 175488..176681 1 NC_008229.1 Function unclear; hypothetical protein 176681 4176307 Hac_0208 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664057.1 175488 D 382638 CDS YP_664058.1 109946830 4177708 complement(176660..178048) 1 NC_008229.1 (P26276) Phosphomannomutase/phosphoglucomutase (EC 5.4.2.8) (EC 5.4.2.2) (PMM / PGM); High confidence in function and specificity; hypothetical protein 178048 algC 4177708 algC Helicobacter acinonychis str. Sheeba hypothetical protein YP_664058.1 176660 R 382638 CDS YP_664059.1 109946831 4176750 complement(178049..180433) 1 NC_008229.1 flagellar functional protein; hypothetical protein; paralysed flagella protein 180433 pflA 4176750 pflA Helicobacter acinonychis str. Sheeba paralysed flagella protein YP_664059.1 178049 R 382638 CDS YP_664060.1 109946832 4176460 complement(180453..181931) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 181931 nuoN 4176460 nuoN Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit N YP_664060.1 180453 R 382638 CDS YP_664061.1 109946833 4176459 complement(181918..183456) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 183456 nuoM 4176459 nuoM Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit M YP_664061.1 181918 R 382638 CDS YP_664062.1 109946834 4176458 complement(183460..185298) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 185298 nuoL 4176458 nuoL Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit L YP_664062.1 183460 R 382638 CDS YP_664063.1 109946835 4176457 complement(185301..185603) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 185603 nuoK 4176457 nuoK Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit K YP_664063.1 185301 R 382638 CDS YP_664064.1 109946836 4176456 complement(185600..186148) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 186148 nuoJ 4176456 nuoJ Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit J YP_664064.1 185600 R 382638 CDS YP_664065.1 109946837 4176455 complement(186141..186803) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 186803 nuoI 4176455 nuoI Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit I YP_664065.1 186141 R 382638 CDS YP_664066.1 109946838 4176454 complement(186813..187802) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 187802 nuoH 4176454 nuoH Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit H YP_664066.1 186813 R 382638 CDS YP_664067.1 109946839 4176453 complement(187799..190291) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 190291 nuoG 4176453 nuoG Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit G YP_664067.1 187799 R 382638 CDS YP_664068.1 109946840 4176452 complement(190288..191280) 1 NC_008229.1 NADH dehydrogenase I subunit F 191280 nuoF 4176452 nuoF Helicobacter acinonychis str. Sheeba NADH dehydrogenase I subunit F YP_664068.1 190288 R 382638 CDS YP_664069.1 109946841 4177456 complement(191277..191507) 1 NC_008229.1 NADH dehydrogenase I subunit E 191507 nuoE 4177456 nuoE Helicobacter acinonychis str. Sheeba NADH dehydrogenase I subunit E YP_664069.1 191277 R 382638 CDS YP_664070.1 109946842 4177455 complement(191504..192733) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 192733 nuoD 4177455 nuoD Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit D YP_664070.1 191504 R 382638 CDS YP_664071.1 109946843 4177454 complement(192735..193532) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C 193532 nuoC 4177454 nuoC Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit C YP_664071.1 192735 R 382638 CDS YP_664072.1 109946844 4177453 complement(193532..194011) 1 NC_008229.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 194011 nuoB 4177453 nuoB Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit B YP_664072.1 193532 R 382638 CDS YP_664073.1 109946845 4177452 complement(194011..194412) 1 NC_008229.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A 194412 nuoA 4177452 nuoA Helicobacter acinonychis str. Sheeba NADH dehydrogenase subunit A YP_664073.1 194011 R 382638 CDS YP_664074.1 109946846 4176890 complement(194780..195469) 1 NC_008229.1 (O25849) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog); High confidence in function and specificity; nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphor 195469 cobT 4176890 cobT Helicobacter acinonychis str. Sheeba nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphor YP_664074.1 194780 R 382638 CDS YP_664075.1 109946847 4176308 complement(195469..195921) 1 NC_008229.1 Function unclear; hypothetical protein 195921 4176308 Hac_0227 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664075.1 195469 R 382638 CDS YP_664076.1 109946848 4177753 complement(195911..196516) 1 NC_008229.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 196516 pyrE 4177753 pyrE Helicobacter acinonychis str. Sheeba orotate phosphoribosyltransferase YP_664076.1 195911 R 382638 CDS YP_664077.1 109946849 4176524 complement(196520..197077) 1 NC_008229.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 197077 frr 4176524 frr Helicobacter acinonychis str. Sheeba ribosome recycling factor YP_664077.1 196520 R 382638 CDS YP_664078.1 109946850 4177171 complement(197077..197640) 1 NC_008229.1 (O25847) Protein-export membrane protein secG; High confidence in function and specificity; preprotein translocase subunit SecG 197640 secG 4177171 secG Helicobacter acinonychis str. Sheeba preprotein translocase subunit SecG YP_664078.1 197077 R 382638 CDS YP_664079.1 109946851 4177116 197757..198482 1 NC_008229.1 (Q9RX93) Trans-aconitate 2-methyltransferase (EC 2.1.1.144); High confidence in function and specificity; biotin synthesis protein BioC 198482 bioC 4177116 bioC Helicobacter acinonychis str. Sheeba biotin synthesis protein BioC YP_664079.1 197757 D 382638 CDS YP_664080.1 109946852 4176669 198540..199532 1 NC_008229.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 199532 trpS 4176669 trpS Helicobacter acinonychis str. Sheeba tryptophanyl-tRNA synthetase YP_664080.1 198540 D 382638 CDS YP_664081.1 109946853 4176447 199533..199994 1 NC_008229.1 (P33913) Hypothetical protein yejA precursor; High confidence in function and specificity; peptide ABC transporter periplasmic protein 199994 oppA fragment 1 4176447 oppA fragment 1 Helicobacter acinonychis str. Sheeba peptide ABC transporter periplasmic protein YP_664081.1 199533 D 382638 CDS YP_664082.1 109946854 4176448 199991..200452 1 NC_008229.1 (P55691) Hypothetical protein Y4WM precursor; High confidence in function and specificity; peptide ABC transporter periplasmic protein 200452 oppA fragment 2 4176448 oppA fragment 2 Helicobacter acinonychis str. Sheeba peptide ABC transporter periplasmic protein YP_664082.1 199991 D 382638 CDS YP_664083.1 109946855 4176449 200430..200654 1 NC_008229.1 (P33913) Hypothetical protein yejA precursor; High confidence in function and specificity; peptide ABC transporter system,periplasmic component fragment 3 200654 oppA fragment 3 4176449 oppA fragment 3 Helicobacter acinonychis str. Sheeba peptide ABC transporter system,periplasmic component fragment 3 YP_664083.1 200430 D 382638 CDS YP_664084.1 109946856 4176450 200680..200775 1 NC_008229.1 Function unclear; peptide ABC transporter system,periplasmic component fragment 4 200775 oppA fragment 4 4176450 oppA fragment 4 Helicobacter acinonychis str. Sheeba peptide ABC transporter system,periplasmic component fragment 4 YP_664084.1 200680 D 382638 CDS YP_664085.1 109946857 4176451 200848..201120 1 NC_008229.1 (P55691) Hypothetical protein Y4WM precursor; High confidence in function and specificity; peptide ABC transporter system,periplasmic component fragment 5 201120 oppA fragment 5 4176451 oppA fragment 5 Helicobacter acinonychis str. Sheeba peptide ABC transporter system,periplasmic component fragment 5 YP_664085.1 200848 D 382638 CDS YP_664086.1 109946858 4177319 201133..201258 1 NC_008229.1 Function unclear; peptide ABC transporter system,periplasmic component fragment 6 201258 oppA fragment 6 4177319 oppA fragment 6 Helicobacter acinonychis str. Sheeba peptide ABC transporter system,periplasmic component fragment 6 YP_664086.1 201133 D 382638 CDS YP_664087.1 109946859 4177320 201336..201455 1 NC_008229.1 Function unclear; peptide ABC transporter permease 201455 oppB fragment 1 4177320 oppB fragment 1 Helicobacter acinonychis str. Sheeba peptide ABC transporter permease YP_664087.1 201336 D 382638 CDS YP_664088.1 109946860 4177321 201476..201709 1 NC_008229.1 (P33914) Hypothetical ABC transporter permease yejB; High confidence in function and specificity; peptide ABC transporter permease 201709 oppB fragment 2 4177321 oppB fragment 2 Helicobacter acinonychis str. Sheeba peptide ABC transporter permease YP_664088.1 201476 D 382638 CDS YP_664089.1 109946861 4177322 201712..202305 1 NC_008229.1 (P33914) Hypothetical ABC transporter permease yejB; High confidence in function and specificity; peptide ABC transporter permease 202305 oppB fragment 3 4177322 oppB fragment 3 Helicobacter acinonychis str. Sheeba peptide ABC transporter permease YP_664089.1 201712 D 382638 CDS YP_664090.1 109946862 4176309 202589..203164 1 NC_008229.1 hypothetical protein 203164 4176309 Hac_0243 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664090.1 202589 D 382638 CDS YP_664091.1 109946863 4176936 203172..203963 1 NC_008229.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 203963 aroE 4176936 aroE Helicobacter acinonychis str. Sheeba shikimate 5-dehydrogenase YP_664091.1 203172 D 382638 CDS YP_664092.1 109946864 4176629 203963..205897 1 NC_008229.1 (P56123) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein homolog); High confidence in function and specificity; ribonuclease R 205897 vacB 4176629 vacB Helicobacter acinonychis str. Sheeba ribonuclease R YP_664092.1 203963 D 382638 CDS YP_664093.1 109946865 4177138 205902..206909 1 NC_008229.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 206909 dnaX 4177138 dnaX Helicobacter acinonychis str. Sheeba DNA polymerase III subunit delta YP_664093.1 205902 D 382638 CDS YP_664094.1 109946866 4177146 207262..207690 1 NC_008229.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 207690 rpsF 4177146 rpsF Helicobacter acinonychis str. Sheeba 30S ribosomal protein S6 YP_664094.1 207262 D 382638 CDS YP_664095.1 109946867 4177463 207706..208251 1 NC_008229.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 208251 ssb 4177463 ssb Helicobacter acinonychis str. Sheeba single-stranded DNA-binding protein YP_664095.1 207706 D 382638 CDS YP_664096.1 109946868 4177157 208275..208532 1 NC_008229.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 208532 rpsR 4177157 rpsR Helicobacter acinonychis str. Sheeba 30S ribosomal protein S18 YP_664096.1 208275 D 382638 CDS YP_664097.1 109946869 4177246 208943..209731 1 NC_008229.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 209731 flgG 4177246 flgG Helicobacter acinonychis str. Sheeba flagellar basal body rod protein FlgG YP_664097.1 208943 D 382638 CDS YP_664098.1 109946870 4176310 complement(209728..210258) 1 NC_008229.1 hypothetical protein 210258 4176310 Hac_0253 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664098.1 209728 R 382638 CDS YP_664099.1 109946871 4176463 complement(210313..210729) 1 NC_008229.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 210729 nusB 4176463 nusB Helicobacter acinonychis str. Sheeba transcription antitermination protein NusB YP_664099.1 210313 R 382638 CDS YP_664100.1 109946872 4177090 complement(210731..211201) 1 NC_008229.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 211201 ribH 4177090 ribH Helicobacter acinonychis str. Sheeba 6,7-dimethyl-8-ribityllumazine synthase YP_664100.1 210731 R 382638 CDS YP_664101.1 109946873 4176132 complement(211212..212042) 1 NC_008229.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 212042 kdsA 4176132 kdsA Helicobacter acinonychis str. Sheeba 2-dehydro-3-deoxyphosphooctonate aldolase YP_664101.1 211212 R 382638 CDS YP_664102.1 109946874 4176394 complement(212029..212694) 1 NC_008229.1 (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1); High confidence in function and specificity; hypothetical protein 212694 cynT 4176394 cynT Helicobacter acinonychis str. Sheeba hypothetical protein YP_664102.1 212029 R 382638 CDS YP_664103.1 109946875 4177754 212815..213498 1 NC_008229.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 213498 pyrF 4177754 pyrF Helicobacter acinonychis str. Sheeba orotidine 5'-phosphate decarboxylase YP_664103.1 212815 D 382638 CDS YP_664104.1 109946876 4177337 213501..214331 1 NC_008229.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 214331 panC 4177337 panC Helicobacter acinonychis str. Sheeba pantoate--beta-alanine ligase YP_664104.1 213501 D 382638 CDS YP_664105.1 109946877 4176311 complement(215110..215457) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 215457 4176311 Hac_0260 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664105.1 215110 R 382638 CDS YP_664106.1 109946878 4176312 complement(215451..216137) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 216137 4176312 Hac_0261 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664106.1 215451 R 382638 CDS YP_664107.1 109946879 4177134 complement(216137..217252) 1 NC_008229.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 217252 dnaJ 4177134 dnaJ Helicobacter acinonychis str. Sheeba chaperone protein DnaJ YP_664107.1 216137 R 382638 CDS YP_664108.1 109946880 4176313 217376..218524 1 NC_008229.1 hypothetical protein 218524 4176313 Hac_0263 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664108.1 217376 D 382638 CDS YP_664109.1 109946881 4177490 complement(218571..219599) 1 NC_008229.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 219599 mnmA 4177490 mnmA Helicobacter acinonychis str. Sheeba tRNA-specific 2-thiouridylase MnmA YP_664109.1 218571 R 382638 CDS YP_664110.1 109946882 4176314 219744..220505 1 NC_008229.1 Function unclear; hypothetical protein 220505 4176314 Hac_0265 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664110.1 219744 D 382638 CDS YP_664111.1 109946883 4177664 complement(220502..221002) 1 NC_008229.1 High confidence in function and specificity; nicotinate-nucleotide adenylyltransferase 221002 nadD 4177664 nadD Helicobacter acinonychis str. Sheeba nicotinate-nucleotide adenylyltransferase YP_664111.1 220502 R 382638 CDS YP_664112.1 109946884 4176315 complement(221012..221458) 1 NC_008229.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 221458 4176315 Hac_0267 Helicobacter acinonychis str. Sheeba nickel responsive regulator YP_664112.1 221012 R 382638 CDS YP_664113.1 109946885 4177401 221739..222179 1 NC_008229.1 (Q9ZJP6) Biopolymer transport exbB protein; High confidence in function and specificity; biopolymer transport protein 222179 exbB 4177401 exbB Helicobacter acinonychis str. Sheeba biopolymer transport protein YP_664113.1 221739 D 382638 CDS YP_664114.1 109946886 4177404 222176..222565 1 NC_008229.1 (Q9ZJP5) Biopolymer transport exbD protein; High confidence in function and specificity; hypothetical protein 222565 exbD 4177404 exbD Helicobacter acinonychis str. Sheeba hypothetical protein YP_664114.1 222176 D 382638 CDS YP_664115.1 109946887 4177487 222531..223400 1 NC_008229.1 (O07650) TonB protein; High confidence in function and specificity; siderophore-mediated iron transport protein 223400 tonB 4177487 tonB Helicobacter acinonychis str. Sheeba siderophore-mediated iron transport protein YP_664115.1 222531 D 382638 CDS YP_664116.1 109946888 4176316 complement(223638..224366) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 224366 4176316 Hac_0272 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664116.1 223638 R 382638 CDS YP_664117.1 109946889 4176899 complement(224373..225329) 1 NC_008229.1 (P27841) Magnesium and cobalt transport protein corA; High confidence in function and specificity; magnesium and cobalt transport protein 225329 corA 4176899 corA Helicobacter acinonychis str. Sheeba magnesium and cobalt transport protein YP_664117.1 224373 R 382638 CDS YP_664118.1 109946890 4176773 complement(225345..226553) 1 NC_008229.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 226553 pgk 4176773 pgk Helicobacter acinonychis str. Sheeba phosphoglycerate kinase YP_664118.1 225345 R 382638 CDS YP_664119.1 109946891 4177022 complement(226568..227560) 1 NC_008229.1 (O34425) Glyceraldehyde 3-phosphate dehydrogenase 2 (EC 1.2.1.59) (GAPDH) (NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase); High confidence in function and specificity; glyceraldehyde 3-phosphate dehydrogenase 227560 gap 4177022 gap Helicobacter acinonychis str. Sheeba glyceraldehyde 3-phosphate dehydrogenase YP_664119.1 226568 R 382638 CDS YP_664120.1 109946892 4176683 complement(227646..228347) 1 NC_008229.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 228347 ung 4176683 ung Helicobacter acinonychis str. Sheeba uracil-DNA glycosylase YP_664120.1 227646 R 382638 CDS YP_664121.1 109946893 4176783 complement(228334..229026) 1 NC_008229.1 (O25903) 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT); High confidence in function and specificity; 1-acyl-sn-glycerol-3-phosphate acyltransferase 229026 plsC 4176783 plsC Helicobacter acinonychis str. Sheeba 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_664121.1 228334 R 382638 CDS YP_664122.1 109946894 4177718 complement(229040..230200) 1 NC_008229.1 hypothetical protein 230200 4177718 Hac_0278 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664122.1 229040 R 382638 CDS YP_664123.1 109946895 4176906 complement(230225..231586) 1 NC_008229.1 (Q44879) Carboxy-terminal processing protease precursor (EC 3.4.21.102) (C-terminal processing protease); High confidence in function and specificity; carboxy-terminal processing protease 231586 ctpA 4176906 ctpA Helicobacter acinonychis str. Sheeba carboxy-terminal processing protease YP_664123.1 230225 R 382638 CDS YP_664124.1 109946896 4177759 231805..232833 1 NC_008229.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 232833 gcp 4177759 gcp Helicobacter acinonychis str. Sheeba DNA-binding/iron metalloprotein/AP endonuclease YP_664124.1 231805 D 382638 CDS YP_664125.1 109946897 4176408 complement(233955..235211) 1 NC_008229.1 (P09795) Modification methylase SinI (EC 2.1.1.37) (Cytosine-specific methyltransferase SinI) (M.SinI); hypothetical protein; site-specific DNA-methyltransferase 235211 dcm 4176408 dcm Helicobacter acinonychis str. Sheeba site-specific DNA-methyltransferase YP_664125.1 233955 R 382638 CDS YP_664126.1 109946898 4177719 complement(235201..236301) 1 NC_008229.1 hypothetical protein 236301 4177719 Hac_0284 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664126.1 235201 R 382638 CDS YP_664127.1 109946899 4176675 complement(236361..237428) 1 NC_008229.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 237428 tsf 4176675 tsf Helicobacter acinonychis str. Sheeba elongation factor Ts YP_664127.1 236361 R 382638 CDS YP_664128.1 109946900 4177142 complement(237482..238222) 1 NC_008229.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 238222 rpsB 4177142 rpsB Helicobacter acinonychis str. Sheeba 30S ribosomal protein S2 YP_664128.1 237482 R 382638 CDS YP_664129.1 109946901 4176741 238474..241374 1 NC_008229.1 (Q89AB3) Exodeoxyribonuclease V beta chain (EC 3.1.11.5); Function unclear; recombination protein RecB 241374 pcrA 4176741 pcrA Helicobacter acinonychis str. Sheeba recombination protein RecB YP_664129.1 238474 D 382638 CDS YP_664130.1 109946902 4177444 241398..242714 1 NC_008229.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 242714 nhaA 4177444 nhaA Helicobacter acinonychis str. Sheeba pH-dependent sodium/proton antiporter YP_664130.1 241398 D 382638 CDS YP_664131.1 109946903 4176644 242763..243053 1 NC_008229.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 243053 yajC 4176644 yajC Helicobacter acinonychis str. Sheeba preprotein translocase subunit YajC YP_664131.1 242763 D 382638 CDS YP_664132.1 109946904 4177168 243054..244634 1 NC_008229.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 244634 secD 4177168 secD Helicobacter acinonychis str. Sheeba preprotein translocase subunit SecD YP_664132.1 243054 D 382638 CDS YP_664133.1 109946905 4177170 244643..245614 1 NC_008229.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 245614 secF 4177170 secF Helicobacter acinonychis str. Sheeba preprotein translocase subunit SecF YP_664133.1 244643 D 382638 CDS YP_664134.1 109946906 4177720 245624..245962 1 NC_008229.1 hypothetical protein 245962 4177720 Hac_0292 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664134.1 245624 D 382638 CDS YP_664135.1 109946907 4177613 245972..248392 1 NC_008229.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 248392 leuS 4177613 leuS Helicobacter acinonychis str. Sheeba leucyl-tRNA synthetase YP_664135.1 245972 D 382638 CDS YP_664136.1 109946908 4177721 248389..248907 1 NC_008229.1 hypothetical protein 248907 4177721 Hac_0294 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664136.1 248389 D 382638 CDS YP_664137.1 109946909 4177509 248912..250072 1 NC_008229.1 (P43775) Folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS); High confidence in function and specificity; folylpolyglutamate synthase / dihydrofolate synthase 250072 folC 4177509 folC Helicobacter acinonychis str. Sheeba folylpolyglutamate synthase / dihydrofolate synthase YP_664137.1 248912 D 382638 CDS YP_664138.1 109946910 4177465 250072..250998 1 NC_008229.1 Function unclear; toxR-activated gene 250998 tagE 4177465 tagE Helicobacter acinonychis str. Sheeba toxR-activated gene YP_664138.1 250072 D 382638 CDS YP_664139.1 109946911 4177466 251007..251942 1 NC_008229.1 High confidence in function and specificity; toxR-activated gene 251942 tagE 4177466 tagE Helicobacter acinonychis str. Sheeba toxR-activated gene YP_664139.1 251007 D 382638 CDS YP_664140.1 109946912 4177722 251861..252268 1 NC_008229.1 Function unclear; hypothetical protein 252268 4177722 Hac_0298 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664140.1 251861 D 382638 CDS YP_664141.1 109946913 4176764 252268..255282 1 NC_008229.1 (O26066) Transcription-repair coupling factor (TRCF); High confidence in function and specificity; transcription-repair coupling factor 255282 mfd 4176764 mfd Helicobacter acinonychis str. Sheeba transcription-repair coupling factor YP_664141.1 252268 D 382638 CDS YP_664142.1 109946914 4177416 255396..255899 1 NC_008229.1 (P51130) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP); Function unclear; cytochrome b6-F complex iron-sulfur subunit 255899 fbcF 4177416 fbcF Helicobacter acinonychis str. Sheeba cytochrome b6-F complex iron-sulfur subunit YP_664142.1 255396 D 382638 CDS YP_664143.1 109946915 4177414 255911..257149 1 NC_008229.1 (P51131) Cytochrome b/c1 [Includes: Cytochrome b; Cytochrome c1]; High confidence in function and specificity; ubiquinol cytochrome c oxidoreductase,cytochrome b subunit 257149 fbcB 4177414 fbcB Helicobacter acinonychis str. Sheeba ubiquinol cytochrome c oxidoreductase,cytochrome b subunit YP_664143.1 255911 D 382638 CDS YP_664144.1 109946916 4177415 257146..258003 1 NC_008229.1 Function unclear; ubiquinol-cytochrome c reductase cytochrome c1 subunit 258003 fbcC 4177415 fbcC Helicobacter acinonychis str. Sheeba ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_664144.1 257146 D 382638 CDS YP_664145.1 109946917 4176395 258252..258803 1 NC_008229.1 (P71405) Serine acetyltransferase (EC 2.3.1.30) (SAT); High confidence in function and specificity; hypothetical protein 258803 cysE 4176395 cysE Helicobacter acinonychis str. Sheeba hypothetical protein YP_664145.1 258252 D 382638 CDS YP_664146.1 109946918 4177723 259057..259575 1 NC_008229.1 Region start changed from 259192 to 259057 (135 bases); ulcer-associated gene restriction endonuclease 259575 4177723 Hac_0305 Helicobacter acinonychis str. Sheeba ulcer-associated gene restriction endonuclease YP_664146.1 259057 D 382638 CDS YP_664147.1 109946919 4176884 259584..260573 1 NC_008229.1 (P24582) Modification methylase NlaIII (EC 2.1.1.72) (CATG-specific methyltransferase HpyIM) (M.HpyI); High confidence in function and specificity; adenine-specific methyltransferase 260573 hpyIM 4176884 hpyIM Helicobacter acinonychis str. Sheeba adenine-specific methyltransferase YP_664147.1 259584 D 382638 CDS YP_664148.1 109946920 4176133 complement(260839..261570) 1 NC_008229.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 261570 kdsB 4176133 kdsB Helicobacter acinonychis str. Sheeba 3-deoxy-manno-octulosonate cytidylyltransferase YP_664148.1 260839 R 382638 CDS YP_664149.1 109946921 4177724 261670..262458 1 NC_008229.1 protein-disulphide isomerase; Function unclear; hypothetical protein 262458 4177724 Hac_0308 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664149.1 261670 D 382638 CDS YP_664150.1 109946922 4177725 262474..263121 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 263121 4177725 Hac_0309 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664150.1 262474 D 382638 CDS YP_664151.1 109946923 4177726 263136..264308 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 264308 4177726 Hac_0310 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664151.1 263136 D 382638 CDS YP_664152.1 109946924 4177727 264308..264838 1 NC_008229.1 integral membrane protein; hypothetical protein; hypothetical protein 264838 4177727 Hac_0311 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664152.1 264308 D 382638 CDS YP_664153.1 109946925 4177165 complement(264924..266291) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 266291 sdaA 4177165 sdaA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664153.1 264924 R 382638 CDS YP_664154.1 109946926 4177166 complement(266291..267532) 1 NC_008229.1 (P44615) Serine transporter; High confidence in function and specificity; serine transporter 267532 sdaC 4177166 sdaC Helicobacter acinonychis str. Sheeba serine transporter YP_664154.1 266291 R 382638 CDS YP_664155.1 109946927 4176933 267718..269067 1 NC_008229.1 (P21357) AroAII Phospho-2-dehydro-3-deoxyheptonate aldolase 1 chloroplast precursor (EC 2.5.1.54); High confidence in function and specificity; phospho-2-dehydro-3-deoxyheptonate aldolase 269067 aroAII 4176933 aroAII Helicobacter acinonychis str. Sheeba phospho-2-dehydro-3-deoxyheptonate aldolase YP_664155.1 267718 D 382638 CDS YP_664156.1 109946928 4177728 complement(269343..269504) 1 NC_008229.1 hypothetical protein 269504 4177728 Hac_0315 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664156.1 269343 R 382638 CDS YP_664157.1 109946929 4177112 complement(269708..270166) 1 NC_008229.1 (Q9ZMU4) Bacterioferritin comigratory protein homolog; High confidence in function and specificity; bacterioferritin comigratory protein 270166 bcp 4177112 bcp Helicobacter acinonychis str. Sheeba bacterioferritin comigratory protein YP_664157.1 269708 R 382638 CDS YP_664158.1 109946930 4177729 complement(270176..270811) 1 NC_008229.1 (P77433) Hypothetical protein ykgG; Specificity unclear; hypothetical protein 270811 4177729 Hac_0318 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664158.1 270176 R 382638 CDS YP_664159.1 109946931 4177730 complement(270804..272249) 1 NC_008229.1 (P77536) electron transport protein (ykgF); High confidence in function and specificity; iron-sulfur electron transport protein 272249 4177730 Hac_0319 Helicobacter acinonychis str. Sheeba iron-sulfur electron transport protein YP_664159.1 270804 R 382638 CDS YP_664160.1 109946932 4177731 complement(272273..273001) 1 NC_008229.1 Specificity unclear; Fe-S oxidoreductase 273001 4177731 Hac_0320 Helicobacter acinonychis str. Sheeba Fe-S oxidoreductase YP_664160.1 272273 R 382638 CDS YP_664161.1 109946933 4177616 273222..274868 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 274868 lldP 4177616 lldP Helicobacter acinonychis str. Sheeba hypothetical protein YP_664161.1 273222 D 382638 CDS YP_664162.1 109946934 4177732 complement(274819..275109) 1 NC_008229.1 hypothetical protein 275109 4177732 Hac_0322 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664162.1 274819 R 382638 CDS YP_664163.1 109946935 4177659 complement(275114..275983) 1 NC_008229.1 High confidence in function and specificity; DNA glycosylase MutY 275983 mutY 4177659 mutY Helicobacter acinonychis str. Sheeba DNA glycosylase MutY YP_664163.1 275114 R 382638 CDS YP_664164.1 109946936 4176605 complement(276101..277549) 1 NC_008229.1 (P77405) Citrate carrier (Citrate transporter) (Citrate/succinate antiporter); High confidence in function and specificity; citrate carrier 277549 citT 4176605 citT Helicobacter acinonychis str. Sheeba citrate carrier YP_664164.1 276101 R 382638 CDS YP_664165.1 109946937 4176820 277745..279232 1 NC_008229.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 279232 fixN 4176820 fixN Helicobacter acinonychis str. Sheeba cbb3-type cytochrome c oxidase subunit I YP_664165.1 277745 D 382638 CDS YP_664166.1 109946938 4176821 279237..279926 1 NC_008229.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 279926 fixO 4176821 fixO Helicobacter acinonychis str. Sheeba cbb3-type cytochrome c oxidase subunit II YP_664166.1 279237 D 382638 CDS YP_664167.1 109946939 4176823 279937..280155 1 NC_008229.1 Family membership; cb-type cytochrome c oxidase subunit IV 280155 fixQ 4176823 fixQ Helicobacter acinonychis str. Sheeba cb-type cytochrome c oxidase subunit IV YP_664167.1 279937 D 382638 CDS YP_664168.1 109946940 4176822 280157..281035 1 NC_008229.1 (Q04441) Cytochrome c oxidase polypeptide II precursor (EC 1.9.3.1) (Cytochrome aa3 subunit 2) (Oxidase aa(3) subunit 2); Function unclear; cb-type cytochrome c oxidase subunit III 281035 fixP 4176822 fixP Helicobacter acinonychis str. Sheeba cb-type cytochrome c oxidase subunit III YP_664168.1 280157 D 382638 CDS YP_664169.1 109946941 4177733 281046..281252 1 NC_008229.1 hypothetical protein 281252 4177733 Hac_0329 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664169.1 281046 D 382638 CDS YP_664170.1 109946942 4177734 281353..281940 1 NC_008229.1 hypothetical protein 281940 4177734 Hac_0330 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664170.1 281353 D 382638 CDS YP_664171.1 109946943 4177735 281953..282540 1 NC_008229.1 hypothetical protein 282540 4177735 Hac_0331 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664171.1 281953 D 382638 CDS YP_664172.1 109946944 4177736 282892..283659 1 NC_008229.1 hypothetical protein 283659 4177736 Hac_0334 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664172.1 282892 D 382638 CDS YP_664173.1 109946945 4176237 complement(283656..284519) 1 NC_008229.1 Function unclear; hypothetical protein 284519 4176237 Hac_0335 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664173.1 283656 R 382638 CDS YP_664174.1 109946946 4177068 284618..285661 1 NC_008229.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 285661 recA 4177068 recA Helicobacter acinonychis str. Sheeba recombinase A YP_664174.1 284618 D 382638 CDS YP_664175.1 109946947 4177398 285672..286952 1 NC_008229.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 286952 eno 4177398 eno Helicobacter acinonychis str. Sheeba phosphopyruvate hydratase YP_664175.1 285672 D 382638 CDS YP_664176.1 109946948 4176238 286945..287220 1 NC_008229.1 hypothetical protein 287220 4176238 Hac_0338 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664176.1 286945 D 382638 CDS YP_664177.1 109946949 4176239 287232..287828 1 NC_008229.1 hypothetical protein 287828 4176239 Hac_0339 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664177.1 287232 D 382638 CDS YP_664178.1 109946950 4176937 287833..288321 1 NC_008229.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 288321 aroK 4176937 aroK Helicobacter acinonychis str. Sheeba shikimate kinase YP_664178.1 287833 D 382638 CDS YP_664179.1 109946951 4176240 288342..289298 1 NC_008229.1 hypothetical protein 289298 4176240 Hac_0341 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664179.1 288342 D 382638 CDS YP_664180.1 109946952 4177081 complement(289295..290398) 1 NC_008229.1 High confidence in function and specificity; lipopolysaccharide 1,2-glucosyltransferase 290398 rfaJ 4177081 rfaJ Helicobacter acinonychis str. Sheeba lipopolysaccharide 1,2-glucosyltransferase YP_664180.1 289295 R 382638 CDS YP_664181.1 109946953 4176241 290558..291454 1 NC_008229.1 (Q9ZMS0) beta-lactamase hcpD precursor (EC 3.5.2.6) (Cysteine-rich protein D) (PBP 4) (Penicillin-binding protein 4); Specificity unclear; hypothetical protein 291454 4176241 Hac_0343 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664181.1 290558 D 382638 CDS YP_664182.1 109946954 4176242 complement(292119..292841) 1 NC_008229.1 (Q9ZMR9) Hypothetical UPF0082 protein JHP0149; High confidence in function and specificity; hypothetical protein 292841 4176242 Hac_0344 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664182.1 292119 R 382638 CDS YP_664183.1 109946955 4177422 complement(292842..293813) 1 NC_008229.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 293813 hemB 4177422 hemB Helicobacter acinonychis str. Sheeba delta-aminolevulinic acid dehydratase YP_664183.1 292842 R 382638 CDS YP_664184.1 109946956 4176243 complement(293889..295163) 1 NC_008229.1 (Q44007) resembles Sensor proteins racS and czcS (EC 2.7.3.-); High confidence in function and specificity; two-component sensor histidine kinase 295163 4176243 Hac_0346 Helicobacter acinonychis str. Sheeba two-component sensor histidine kinase YP_664184.1 293889 R 382638 CDS YP_664185.1 109946957 4176442 complement(295187..295864) 1 NC_008229.1 (P48259) Probable transcriptional regulator ycf27 (OmpR-like protein); High confidence in function and specificity; response regulator 295864 ompR 4176442 ompR Helicobacter acinonychis str. Sheeba response regulator YP_664185.1 295187 R 382638 CDS YP_664186.1 109946958 4176244 complement(296277..296735) 1 NC_008229.1 hypothetical protein 296735 4176244 Hac_0348 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664186.1 296277 R 382638 CDS YP_664187.1 109946959 4176245 complement(296726..296989) 1 NC_008229.1 hypothetical protein 296989 4176245 Hac_0349 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664187.1 296726 R 382638 CDS YP_664188.1 109946960 4176568 complement(297030..298307) 1 NC_008229.1 (P56113) protease HP0169 precursor (EC 3.4.-.-); hypothetical protein; protease 298307 prtC 4176568 prtC Helicobacter acinonychis str. Sheeba protease YP_664188.1 297030 R 382638 CDS YP_664189.1 109946961 4176246 complement(298310..299038) 1 NC_008229.1 (Q18823) Laminin-like protein C54D1.5 precursor; hypothetical protein; hypothetical protein 299038 4176246 Hac_0351 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664189.1 298310 R 382638 CDS YP_664190.1 109946962 4176560 complement(299102..300193) 1 NC_008229.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 300193 prfB 4176560 prfB Helicobacter acinonychis str. Sheeba peptide chain release factor 2 YP_664190.1 299102 R 382638 CDS YP_664191.1 109946963 4177504 complement(300254..301021) 1 NC_008229.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 301021 fliR 4177504 fliR Helicobacter acinonychis str. Sheeba flagellar biosynthesis protein FliR YP_664191.1 300254 R 382638 CDS YP_664192.1 109946964 4176247 complement(301015..301743) 1 NC_008229.1 hypothetical protein 301743 4176247 Hac_0354 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664192.1 301015 R 382638 CDS YP_664193.1 109946965 4176248 301924..302820 1 NC_008229.1 peptidyl-prolyl cis-trans isomerase 302820 4176248 Hac_0356 Helicobacter acinonychis str. Sheeba peptidyl-prolyl cis-trans isomerase YP_664193.1 301924 D 382638 CDS YP_664194.1 109946966 4177413 302830..303753 1 NC_008229.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 303753 fba 4177413 fba Helicobacter acinonychis str. Sheeba fructose-bisphosphate aldolase YP_664194.1 302830 D 382638 CDS YP_664195.1 109946967 4176393 303775..304338 1 NC_008229.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 304338 efp 4176393 efp Helicobacter acinonychis str. Sheeba elongation factor P YP_664195.1 303775 D 382638 CDS YP_664196.1 109946968 4176249 304795..305928 1 NC_008229.1 DNA-cytosine methyltransferase 305928 4176249 Hac_0360 Helicobacter acinonychis str. Sheeba DNA-cytosine methyltransferase YP_664196.1 304795 D 382638 CDS YP_664197.1 109946969 4176250 305915..306685 1 NC_008229.1 hypothetical protein 306685 4176250 Hac_0361 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664197.1 305915 D 382638 CDS YP_664198.1 109946970 4176251 306660..308003 1 NC_008229.1 GTPase subunit of restriction endonuclease; hypothetical protein; type II restriction enzyme 308003 4176251 Hac_0362 Helicobacter acinonychis str. Sheeba type II restriction enzyme YP_664198.1 306660 D 382638 CDS YP_664199.1 109946971 4176252 307996..309213 1 NC_008229.1 type II restriction-modification system restriction subunit; hypothetical protein; hypothetical protein 309213 4176252 Hac_0363 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664199.1 307996 D 382638 CDS YP_664200.1 109946972 4176253 complement(309299..310321) 1 NC_008229.1 hypothetical protein 310321 4176253 Hac_0364 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664200.1 309299 R 382638 CDS YP_664201.1 109946973 4176254 complement(310324..310965) 1 NC_008229.1 ABC transporter ATP-binding protein 310965 4176254 Hac_0365 Helicobacter acinonychis str. Sheeba ABC transporter ATP-binding protein YP_664201.1 310324 R 382638 CDS YP_664202.1 109946974 4176907 complement(310962..312239) 1 NC_008229.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 312239 cute 4176907 cute Helicobacter acinonychis str. Sheeba apolipoprotein N-acyltransferase YP_664202.1 310962 R 382638 CDS YP_664203.1 109946975 4176255 312483..313181 1 NC_008229.1 Uncharacterized membrane protein, required for colicin V production; hypothetical protein; hypothetical protein 313181 4176255 Hac_0367 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664203.1 312483 D 382638 CDS YP_664204.1 109946976 4177630 313191..314696 1 NC_008229.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 314696 lysS 4177630 lysS Helicobacter acinonychis str. Sheeba lysyl-tRNA synthetase YP_664204.1 313191 D 382638 CDS YP_664205.1 109946977 4177263 314696..315946 1 NC_008229.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 315946 glyA 4177263 glyA Helicobacter acinonychis str. Sheeba serine hydroxymethyltransferase YP_664205.1 314696 D 382638 CDS YP_664206.1 109946978 4176256 315957..316499 1 NC_008229.1 hypothetical protein 316499 4176256 Hac_0370 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664206.1 315957 D 382638 CDS YP_664207.1 109946979 4177515 316521..317321 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 317321 4177515 Hac_0371 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664207.1 316521 D 382638 CDS YP_664208.1 109946980 4177516 317639..319765 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 319765 4177516 Hac_0372 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664208.1 317639 D 382638 CDS YP_664209.1 109946981 4177517 319821..320126 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 320126 4177517 Hac_0373 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664209.1 319821 D 382638 CDS YP_664210.1 109946982 4177518 320132..320401 1 NC_008229.1 (O24989) Hypothetical protein HP0189(O24989) Hypothetical protein HP0189; specifity unclear; hypothetical protein 320401 4177518 Hac_0374 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664210.1 320132 D 382638 CDS YP_664211.1 109946983 4177519 complement(320408..321916) 1 NC_008229.1 (Q9ZMP2) Hypothetical protein JHP0176(Q9ZMP2); Specificity unclear; phospholipase 321916 4177519 Hac_0375 Helicobacter acinonychis str. Sheeba phospholipase YP_664211.1 320408 R 382638 CDS YP_664212.1 109946984 4176519 complement(321937..322674) 1 NC_008229.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 322674 frdB 4176519 frdB Helicobacter acinonychis str. Sheeba fumarate reductase iron-sulfur subunit YP_664212.1 321937 R 382638 CDS YP_664213.1 109946985 4176518 complement(322667..324811) 1 NC_008229.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 324811 frdA 4176518 frdA Helicobacter acinonychis str. Sheeba fumarate reductase flavoprotein subunit YP_664213.1 322667 R 382638 CDS YP_664214.1 109946986 4176520 complement(324821..325588) 1 NC_008229.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 325588 frdC 4176520 frdC Helicobacter acinonychis str. Sheeba fumarate reductase cytochrome b-556 subunit YP_664214.1 324821 R 382638 CDS YP_664215.1 109946987 4177480 325802..326506 1 NC_008229.1 tim; Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 326506 tpiA 4177480 tpiA Helicobacter acinonychis str. Sheeba triosephosphate isomerase YP_664215.1 325802 D 382638 CDS YP_664216.1 109946988 4177411 326516..327343 1 NC_008229.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 327343 fabI 4177411 fabI Helicobacter acinonychis str. Sheeba enoyl-(acyl carrier protein) reductase YP_664216.1 326516 D 382638 CDS YP_664217.1 109946989 4177623 327354..328364 1 NC_008229.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 328364 lpxD 4177623 lpxD Helicobacter acinonychis str. Sheeba UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_664217.1 327354 D 382638 CDS YP_664218.1 109946990 4176762 328425..329582 1 NC_008229.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 329582 metK 4176762 metK Helicobacter acinonychis str. Sheeba S-adenosylmethionine synthetase YP_664218.1 328425 D 382638 CDS YP_664219.1 109946991 4177438 329649..330062 1 NC_008229.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 330062 ndk 4177438 ndk Helicobacter acinonychis str. Sheeba nucleoside diphosphate kinase YP_664219.1 329649 D 382638 CDS YP_664220.1 109946992 4177520 330087..330443 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 330443 4177520 Hac_0384 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664220.1 330087 D 382638 CDS YP_664221.1 109946993 4176860 330459..330605 1 NC_008229.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 330605 rpmF 4176860 rpmF Helicobacter acinonychis str. Sheeba 50S ribosomal protein L32 YP_664221.1 330459 D 382638 CDS YP_664222.1 109946994 4176784 330668..331687 1 NC_008229.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 331687 plsX 4176784 plsX Helicobacter acinonychis str. Sheeba glycerol-3-phosphate acyltransferase PlsX YP_664222.1 330668 D 382638 CDS YP_664223.1 109946995 4177410 331712..332707 1 NC_008229.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 332707 fabH 4177410 fabH Helicobacter acinonychis str. Sheeba 3-oxoacyl-ACP synthase YP_664223.1 331712 D 382638 CDS YP_664224.1 109946996 4177521 332730..333032 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 333032 4177521 Hac_0388 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664224.1 332730 D 382638 CDS YP_664225.1 109946997 4177224 complement(333304..333519) 1 NC_008229.1 hypothetical protein 333519 fragment 2 4177224 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664225.1 333304 R 382638 CDS YP_664226.1 109946998 4176342 complement(333714..335117) 1 NC_008229.1 hypothetical protein 335117 fragment 1 4176342 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664226.1 333714 R 382638 CDS YP_664227.1 109946999 4176589 complement(335560..336303) 1 NC_008229.1 (O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase); High confidence in function and specificity; hypothetical protein 336303 cah 4176589 cah Helicobacter acinonychis str. Sheeba hypothetical protein YP_664227.1 335560 R 382638 CDS YP_664228.1 109947000 4177522 336529..337704 1 NC_008229.1 Region start changed from 336580 to 336529 (51 bases); sugar efflux transporter 337704 4177522 Hac_0393 Helicobacter acinonychis str. Sheeba sugar efflux transporter YP_664228.1 336529 D 382638 CDS YP_664229.1 109947001 4177523 337807..339192 1 NC_008229.1 hypothetical protein 339192 4177523 Hac_0394 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664229.1 337807 D 382638 CDS YP_664230.1 109947002 4177666 339217..340368 1 NC_008229.1 (P40309) K(+)/H(+) antiporter, NA+/H+ antiporter (napA) [Helicobacter pylori 26695]; hypothetical protein; Na+/H+ antiporter 340368 napA 4177666 napA Helicobacter acinonychis str. Sheeba Na+/H+ antiporter YP_664230.1 339217 D 382638 CDS YP_664231.1 109947003 4177524 complement(340376..341137) 1 NC_008229.1 hypothetical protein 341137 4177524 Hac_0396 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664231.1 340376 R 382638 CDS YP_664232.1 109947004 4177525 complement(341156..342544) 1 NC_008229.1 (P77726) Hypothetical transport protein; hypothetical protein; major facilitator family transporter 342544 4177525 Hac_0397 Helicobacter acinonychis str. Sheeba major facilitator family transporter YP_664232.1 341156 R 382638 CDS YP_664233.1 109947005 4176461 342832..344088 1 NC_008229.1 (Q62773) Sodium/nucleoside cotransporter 2 (Na(+)/nucleoside cotransporter 2) (Sodium-coupled nucleoside transporter 2) (Concentrative nucleoside transporter 2) (CNT 2) (Sodium/purine nucleoside co-transporter) (SPNT) (RCNT2); hypothetical protein; pyrimidine nucleoside transport protein 344088 nupC 4176461 nupC Helicobacter acinonychis str. Sheeba pyrimidine nucleoside transport protein YP_664233.1 342832 D 382638 CDS YP_664234.1 109947006 4177125 344100..345341 1 NC_008229.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 345341 deoB 4177125 deoB Helicobacter acinonychis str. Sheeba phosphopentomutase YP_664234.1 344100 D 382638 CDS YP_664235.1 109947007 4177126 345338..346039 1 NC_008229.1 (P56463) Purine nucleoside phosphorylase (EC 2.4.2.1) (Inosine phosphorylase) (PNP); High confidence in function and specificity; hypothetical protein 346039 deoD 4177126 deoD Helicobacter acinonychis str. Sheeba hypothetical protein YP_664235.1 345338 D 382638 CDS YP_664236.1 109947008 4177526 346488..347795 1 NC_008229.1 transmembrane transport protein; Specificity unclear; hypothetical protein 347795 4177526 Hac_0401 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664236.1 346488 D 382638 CDS YP_664237.1 109947009 4177010 347923..349146 1 NC_008229.1 High confidence in function and specificity; glucose/galactose transporter 349146 fucP 4177010 fucP Helicobacter acinonychis str. Sheeba glucose/galactose transporter YP_664237.1 347923 D 382638 CDS YP_664238.1 109947010 4177527 complement(349425..349985) 1 NC_008229.1 hypothetical protein 349985 4177527 Hac_0404 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664238.1 349425 R 382638 CDS YP_664239.1 109947011 4177770 complement(350086..350919) 1 NC_008229.1 (P27676) Glutamine-binding protein precursor (GlnBP); High confidence in function and specificity; polar amino acid transport system substrate-binding protein 350919 glnH 4177770 glnH Helicobacter acinonychis str. Sheeba polar amino acid transport system substrate-binding protein YP_664239.1 350086 R 382638 CDS YP_664240.1 109947012 4177773 complement(350969..351715) 1 NC_008229.1 glutamine transport system permease; High confidence in function and specificity; polar amino acid transport system ATP-binding protein 351715 glnQ 4177773 glnQ Helicobacter acinonychis str. Sheeba polar amino acid transport system ATP-binding protein YP_664240.1 350969 R 382638 CDS YP_664241.1 109947013 4177771 complement(351717..352388) 1 NC_008229.1 glutamine transport system permease; Function unclear; polar amino acid transport system permease 352388 glnP 4177771 glnP Helicobacter acinonychis str. Sheeba polar amino acid transport system permease YP_664241.1 351717 R 382638 CDS YP_664242.1 109947014 4177772 complement(352390..353022) 1 NC_008229.1 glutamine ABC transporter permease (glnP); Function unclear; polar amino acid transport system permease 353022 glnP 4177772 glnP Helicobacter acinonychis str. Sheeba polar amino acid transport system permease YP_664242.1 352390 R 382638 CDS YP_664243.1 109947015 4176905 353235..355298 1 NC_008229.1 (Q9ZK47) Carbon starvation protein A homolog; High confidence in function and specificity; carbon starvation protein A 355298 cstA 4176905 cstA Helicobacter acinonychis str. Sheeba carbon starvation protein A YP_664243.1 353235 D 382638 CDS YP_664244.1 109947016 4176872 complement(355848..357170) 1 NC_008229.1 outer membrane protein,no omp family protein; hypothetical protein; hof family outer membrane protein 357170 hofH 4176872 hofH Helicobacter acinonychis str. Sheeba hof family outer membrane protein YP_664244.1 355848 R 382638 CDS YP_664245.1 109947017 4177448 357791..358816 1 NC_008229.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 358816 nrdF 4177448 nrdF Helicobacter acinonychis str. Sheeba ribonucleotide-diphosphate reductase subunit beta YP_664245.1 357791 D 382638 CDS YP_664246.1 109947018 4176740 358826..359455 1 NC_008229.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 359455 pcm 4176740 pcm Helicobacter acinonychis str. Sheeba protein-L-isoaspartate O-methyltransferase YP_664246.1 358826 D 382638 CDS YP_664247.1 109947019 4177528 359442..360512 1 NC_008229.1 Predicted permease; Function unclear; hypothetical protein 360512 4177528 Hac_0413 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664247.1 359442 D 382638 CDS YP_664248.1 109947020 4176670 360514..361242 1 NC_008229.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 361242 truA 4176670 truA Helicobacter acinonychis str. Sheeba tRNA pseudouridine synthase A YP_664248.1 360514 D 382638 CDS YP_664249.1 109947021 4177020 complement(361236..362270) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 362270 galE 4177020 galE Helicobacter acinonychis str. Sheeba hypothetical protein YP_664249.1 361236 R 382638 CDS YP_664250.1 109947022 4177514 complement(362704..362952) 1 NC_008229.1 High confidence in function and specificity; thiol peroxidase 362952 fragment 4177514 fragment Helicobacter acinonychis str. Sheeba thiol peroxidase YP_664250.1 362704 R 382638 CDS YP_664251.1 109947023 4177459 363422..364069 1 NC_008229.1 (Q9ZKE6) Superoxide dismutase [Fe] (EC 1.15.1.1); High confidence in function and specificity; hypothetical protein 364069 sodB 4177459 sodB Helicobacter acinonychis str. Sheeba hypothetical protein YP_664251.1 363422 D 382638 CDS YP_664252.1 109947024 4177529 364123..364842 1 NC_008229.1 TIGR00740: methyltransferase, Specificity unclear; hypothetical protein 364842 4177529 Hac_0420 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664252.1 364123 D 382638 CDS YP_664253.1 109947025 4176561 complement(364848..366707) 1 NC_008229.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 366707 priA 4176561 priA Helicobacter acinonychis str. Sheeba primosome assembly protein PriA YP_664253.1 364848 R 382638 CDS YP_664254.1 109947026 4177530 complement(366692..366928) 1 NC_008229.1 (O25148) Hypothetical protein HP0386/JHP0995; High confidence in function and specificity; hypothetical protein 366928 4177530 Hac_0422 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664254.1 366692 R 382638 CDS YP_664255.1 109947027 4177531 complement(366941..367168) 1 NC_008229.1 hypothetical protein 367168 4177531 Hac_0423 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664255.1 366941 R 382638 CDS YP_664256.1 109947028 4177532 367325..369679 1 NC_008229.1 hypothetical protein 369679 4177532 Hac_0424 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664256.1 367325 D 382638 CDS YP_664257.1 109947029 4177533 369745..370035 1 NC_008229.1 hypothetical protein 370035 4177533 Hac_0425 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664257.1 369745 D 382638 CDS YP_664258.1 109947030 4176695 370104..372080 1 NC_008229.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 372080 uvrB 4176695 uvrB Helicobacter acinonychis str. Sheeba excinuclease ABC subunit B YP_664258.1 370104 D 382638 CDS YP_664259.1 109947031 4176581 complement(372077..372910) 1 NC_008229.1 outer membrane protein 3 372910 omp3 4176581 omp3 Helicobacter acinonychis str. Sheeba outer membrane protein 3 YP_664259.1 372077 R 382638 CDS YP_664260.1 109947032 4177743 complement(373021..374343) 1 NC_008229.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 374343 purB 4177743 purB Helicobacter acinonychis str. Sheeba adenylosuccinate lyase YP_664260.1 373021 R 382638 CDS YP_664261.1 109947033 4176790 complement(374436..375380) 1 NC_008229.1 (Q57714) Pyruvate synthase subunit porB (EC 1.2.7.1) (Pyruvate oxidoreductase beta chain) (POR) (Pyruvic-ferredoxin oxidoreductase beta subunit); High confidence in function and specificity; pyruvate ferredoxin oxidoreductase subunit beta 375380 porB 4176790 porB Helicobacter acinonychis str. Sheeba pyruvate ferredoxin oxidoreductase subunit beta YP_664261.1 374436 R 382638 CDS YP_664262.1 109947034 4176789 complement(375393..376616) 1 NC_008229.1 (O05651) Pyruvate synthase subunit porA (EC 1.2.7.1) (Pyruvate oxidoreductase alpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase alpha subunit); High confidence in function and specificity; pyruvate flavodoxin oxidoreductase subunit alpha 376616 porA 4176789 porA Helicobacter acinonychis str. Sheeba pyruvate flavodoxin oxidoreductase subunit alpha YP_664262.1 375393 R 382638 CDS YP_664263.1 109947035 4176550 complement(376626..377018) 1 NC_008229.1 (Q56316) Pyruvate synthase subunit porD (EC 1.2.7.1) (Pyruvate oxidoreductase delta chain) (POR) (Pyruvic-ferredoxin oxidoreductase delta subunit); Function unclear; pyruvate flavodoxin oxidoreductase subunit delta 377018 porD 4176550 porD Helicobacter acinonychis str. Sheeba pyruvate flavodoxin oxidoreductase subunit delta YP_664263.1 376626 R 382638 CDS YP_664264.1 109947036 4176551 complement(377034..377594) 1 NC_008229.1 (Q9UYY9) Pyruvate/ketoisovalerate oxidoreductases common gamma subunit [Includes: Pyruvate synthase subunit porC (EC 1.2.7.1) (Pyruvate oxidoreductase gamma chain) (POR) (Pyruvic-ferredoxin oxidoreductase gamma subunit); Ketoisovalerate oxidor; High confidence in function and specificity; pyruvate flavodoxin oxidoreductase subunit gamma 377594 porG 4176551 porG Helicobacter acinonychis str. Sheeba pyruvate flavodoxin oxidoreductase subunit gamma YP_664264.1 377034 R 382638 CDS YP_664265.1 109947037 4176433 377858..378511 1 NC_008229.1 outer membrane protein 4 378511 omp4 4176433 omp4 Helicobacter acinonychis str. Sheeba outer membrane protein 4 YP_664265.1 377858 D 382638 CDS YP_664266.1 109947038 4176140 complement(378514..379824) 1 NC_008229.1 hypothetical protein 379824 4176140 Hac_0435 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664266.1 378514 R 382638 CDS YP_664267.1 109947039 4176141 380002..381258 1 NC_008229.1 (P27128) Lipopolysaccharide 13-galactosyltransferase (EC 2.4.1.44) (Lipopolysaccharide 3-alpha-galactosyltransferase); Function unclear; lipopolysaccharide biosynthesis protein 381258 4176141 Hac_0436 Helicobacter acinonychis str. Sheeba lipopolysaccharide biosynthesis protein YP_664267.1 380002 D 382638 CDS YP_664268.1 109947040 4177700 complement(381271..382323) 1 NC_008229.1 High confidence in function and specificity; NADP-dependent alcohol dehydrogenase 382323 adhA 4177700 adhA Helicobacter acinonychis str. Sheeba NADP-dependent alcohol dehydrogenase YP_664268.1 381271 R 382638 CDS YP_664269.1 109947041 4177766 complement(382630..383640) 1 NC_008229.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 383640 glk 4177766 glk Helicobacter acinonychis str. Sheeba glucokinase YP_664269.1 382630 R 382638 CDS YP_664270.1 109947042 4176774 complement(383627..384310) 1 NC_008229.1 High confidence in function and specificity; 6-phosphogluconolactonase 384310 pgl 4176774 pgl Helicobacter acinonychis str. Sheeba 6-phosphogluconolactonase YP_664270.1 383627 R 382638 CDS YP_664271.1 109947043 4176142 complement(384321..385598) 1 NC_008229.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 385598 4176142 Hac_0441 Helicobacter acinonychis str. Sheeba glucose-6-phosphate 1-dehydrogenase YP_664271.1 384321 R 382638 CDS YP_664272.1 109947044 4176392 385661..387487 1 NC_008229.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 387487 edd 4176392 edd Helicobacter acinonychis str. Sheeba phosphogluconate dehydratase YP_664272.1 385661 D 382638 CDS YP_664273.1 109947045 4176391 387498..388142 1 NC_008229.1 (P38448) KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) (Phospho-2-dehydro-3-deoxygluconate aldolase); High confidence in function and specificity; 2-dehydro-3-deoxyphosphogluconate aldolase 388142 eda 4176391 eda Helicobacter acinonychis str. Sheeba 2-dehydro-3-deoxyphosphogluconate aldolase YP_664273.1 387498 D 382638 CDS YP_664274.1 109947046 4176143 388235..389110 1 NC_008229.1 (Q9ZKB5) beta-lactamase hcpC precursor (EC 3.5.2.6) (Cysteine-rich protein C); Specificity unclear; secreted protein 389110 4176143 Hac_0444 Helicobacter acinonychis str. Sheeba secreted protein YP_664274.1 388235 D 382638 CDS YP_664275.1 109947047 4176144 complement(389213..390748) 1 NC_008229.1 outer membrane protein 390748 4176144 Hac_0445 Helicobacter acinonychis str. Sheeba outer membrane protein YP_664275.1 389213 R 382638 CDS YP_664276.1 109947048 4176145 390884..391996 1 NC_008229.1 Specificity unclear; hypothetical protein 391996 4176145 Hac_0446 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664276.1 390884 D 382638 CDS YP_664277.1 109947049 4176687 complement(392063..393772) 1 NC_008229.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit beta 393772 ureB 4176687 ureB Helicobacter acinonychis str. Sheeba urease subunit beta YP_664277.1 392063 R 382638 CDS YP_664278.1 109947050 4176686 complement(393783..394466) 1 NC_008229.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit alpha 394466 ureAB 4176686 ureAB Helicobacter acinonychis str. Sheeba urease subunit alpha YP_664278.1 393783 R 382638 CDS YP_664279.1 109947051 4176603 complement(394889..395386) 1 NC_008229.1 (P07365) Chemotaxis protein cheW, purine-binding chemotaxis protein; Function unclear; chemotaxis protein CheW 395386 cheW 4176603 cheW Helicobacter acinonychis str. Sheeba chemotaxis protein CheW YP_664279.1 394889 R 382638 CDS YP_664280.1 109947052 4176599 complement(395383..397806) 1 NC_008229.1 (P29072) Chemotaxis protein cheA (EC 2.7.3.-); High confidence in function and specificity; histidine kinase 397806 cheA 4176599 cheA Helicobacter acinonychis str. Sheeba histidine kinase YP_664280.1 395383 R 382638 CDS YP_664281.1 109947053 4176600 complement(397862..398800) 1 NC_008229.1 (P37599) Chemotaxis protein cheV; High confidence in function and specificity; chemotaxis protein CheV 398800 cheV 4176600 cheV Helicobacter acinonychis str. Sheeba chemotaxis protein CheV YP_664281.1 397862 R 382638 CDS YP_664282.1 109947054 4176146 complement(398804..399565) 1 NC_008229.1 (P44046) UDP-23-diacylglucosamine hydrolase (EC 3.6.1.-); High confidence in function and specificity; hypothetical protein 399565 4176146 Hac_0452 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664282.1 398804 R 382638 CDS YP_664283.1 109947055 4176147 complement(399567..400235) 1 NC_008229.1 (Q9ZKF2) Hypothetical UPF0001 protein JHP0986; Specificity unclear; hypothetical protein 400235 4176147 Hac_0453 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664283.1 399567 R 382638 CDS YP_664284.1 109947056 4176148 complement(400245..402095) 1 NC_008229.1 High confidence in function and specificity; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 402095 4176148 Hac_0454 Helicobacter acinonychis str. Sheeba 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_664284.1 400245 R 382638 CDS YP_664285.1 109947057 4177174 complement(402098..403672) 1 NC_008229.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 403672 serA 4177174 serA Helicobacter acinonychis str. Sheeba D-3-phosphoglycerate dehydrogenase YP_664285.1 402098 R 382638 CDS YP_664286.1 109947058 4176149 complement(403688..404200) 1 NC_008229.1 hypothetical protein 404200 4176149 Hac_0456 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664286.1 403688 R 382638 CDS YP_664287.1 109947059 4177141 complement(404229..405887) 1 NC_008229.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 405887 rpsA 4177141 rpsA Helicobacter acinonychis str. Sheeba 30S ribosomal protein S1 YP_664287.1 404229 R 382638 CDS YP_664288.1 109947060 4177631 complement(406005..406817) 1 NC_008229.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 406817 ispH 4177631 ispH Helicobacter acinonychis str. Sheeba 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_664288.1 406005 R 382638 CDS YP_664289.1 109947061 4176932 complement(406819..408108) 1 NC_008229.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 408108 aroA 4176932 aroA Helicobacter acinonychis str. Sheeba 3-phosphoshikimate 1-carboxyvinyltransferase YP_664289.1 406819 R 382638 CDS YP_664290.1 109947062 4176779 complement(408124..410415) 1 NC_008229.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 410415 pheT 4176779 pheT Helicobacter acinonychis str. Sheeba phenylalanyl-tRNA synthetase subunit beta YP_664290.1 408124 R 382638 CDS YP_664291.1 109947063 4176778 complement(410415..411401) 1 NC_008229.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 411401 pheS 4176778 pheS Helicobacter acinonychis str. Sheeba phenylalanyl-tRNA synthetase subunit alpha YP_664291.1 410415 R 382638 CDS YP_664292.1 109947064 4176646 411482..411796 1 NC_008229.1 (P56147) Hypothetical HIT-like protein HP0404/JHP0977; High confidence in function and specificity; HIT-family protein 411796 ycfF 4176646 ycfF Helicobacter acinonychis str. Sheeba HIT-family protein YP_664292.1 411482 D 382638 CDS YP_664293.1 109947065 4176150 411815..413137 1 NC_008229.1 (Q9X191) Probable cysteine desulfurase (EC 4.4.1.-or 2.8.1.7); High confidence in function and specificity; aminotransferase 413137 4176150 Hac_0463 Helicobacter acinonychis str. Sheeba aminotransferase YP_664293.1 411815 D 382638 CDS YP_664294.1 109947066 4176151 413163..413753 1 NC_008229.1 hypothetical protein 413753 4176151 Hac_0464 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664294.1 413163 D 382638 CDS YP_664295.1 109947067 4176152 414083..414562 1 NC_008229.1 hypothetical protein 414562 4176152 Hac_0465 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664295.1 414083 D 382638 CDS YP_664296.1 109947068 4177275 414573..416099 1 NC_008229.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 416099 guaA 4177275 guaA Helicobacter acinonychis str. Sheeba GMP synthase YP_664296.1 414573 D 382638 CDS YP_664297.1 109947069 4176880 416178..416927 1 NC_008229.1 (Q48261) Neuraminyllactose-binding hemagglutinin precursor (N-acetylneuraminyllactose-binding fibrillar hemagglutinin receptor-binding subunit) (NLBH) (Flagellar sheath adhesin), neuraminyllactose-binding hemagglutinin homolog (hpaA); High confidence in function and specificity; neuraminyllactose-binding hemagglutinin 416927 hpaA 4176880 hpaA Helicobacter acinonychis str. Sheeba neuraminyllactose-binding hemagglutinin YP_664297.1 416178 D 382638 CDS YP_664298.1 109947070 4176153 418498..419004 1 NC_008229.1 hypothetical protein 419004 4176153 Hac_0471 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664298.1 418498 D 382638 CDS YP_664299.1 109947071 4176154 complement(419193..419723) 1 NC_008229.1 hypothetical protein 419723 4176154 Hac_0472 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664299.1 419193 R 382638 CDS YP_664300.1 109947072 4176155 419925..421148 1 NC_008229.1 (Q10071) Probable CAAX prenyl protease 1 (EC 3.4.24.84) (Prenyl protein-specific endoprotease 1) (PPSEP 1); High confidence in function and specificity; integral membrane zinc-metalloprotease 421148 4176155 Hac_0473 Helicobacter acinonychis str. Sheeba integral membrane zinc-metalloprotease YP_664300.1 419925 D 382638 CDS YP_664301.1 109947073 4177427 421145..421975 1 NC_008229.1 (O66506) HemK protein homolog (EC 2.1.1.-) (M.AaoHemKP); High confidence in function and specificity; protoporphyrinogen oxidase 421975 hemK 4177427 hemK Helicobacter acinonychis str. Sheeba protoporphyrinogen oxidase YP_664301.1 421145 D 382638 CDS YP_664302.1 109947074 4177761 422135..423481 1 NC_008229.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 423481 gdhA 4177761 gdhA Helicobacter acinonychis str. Sheeba glutamate dehydrogenase YP_664302.1 422135 D 382638 CDS YP_664303.1 109947075 4177297 complement(423610..424257) 1 NC_008229.1 Function unclear; hypothetical protein 424257 fragment 4 4177297 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664303.1 423610 R 382638 CDS YP_664304.1 109947076 4177279 complement(424282..424407) 1 NC_008229.1 Function unclear; hypothetical protein 424407 fragment 3 4177279 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664304.1 424282 R 382638 CDS YP_664305.1 109947077 4177225 complement(424432..424818) 1 NC_008229.1 Function unclear; hypothetical protein 424818 fragment 2 4177225 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664305.1 424432 R 382638 CDS YP_664306.1 109947078 4176343 complement(424799..424930) 1 NC_008229.1 Function unclear; hypothetical protein 424930 fragment 1 4176343 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664306.1 424799 R 382638 CDS YP_664307.1 109947079 4177015 complement(424990..426219) 1 NC_008229.1 (Q9LJK1) Glycoprotein 3-alpha-L-fucosyltransferase A (EC 2.4.1.214) (Core alpha-(13)-fucosyltransferase) (Fuc-T C3) (FucTA) (FucT1) (AtFUT11); hypothetical protein; alpha (1,3)-fucosyltransferase fragment 3 426219 fucT fragment 3 4177015 fucT fragment 3 Helicobacter acinonychis str. Sheeba alpha (1,3)-fucosyltransferase fragment 3 YP_664307.1 424990 R 382638 CDS YP_664308.1 109947080 4177013 complement(426191..426361) 1 NC_008229.1 alpha (1,3)-fucosyltransferase fragment-2; hypothetical protein; alpha (1,3)-fucosyltransferase fragment 2 426361 fucT fragment 2 4177013 fucT fragment 2 Helicobacter acinonychis str. Sheeba alpha (1,3)-fucosyltransferase fragment 2 YP_664308.1 426191 R 382638 CDS YP_664309.1 109947081 4177011 complement(426374..426622) 1 NC_008229.1 alpha-1,4 fucosyltransferase (fucTIII) gene; hypothetical protein; alpha (1,3)-fucosyltransferase fragment 1 426622 fucT fragment 1 4177011 fucT fragment 1 Helicobacter acinonychis str. Sheeba alpha (1,3)-fucosyltransferase fragment 1 YP_664309.1 426374 R 382638 CDS YP_664310.1 109947082 4177175 complement(426787..427410) 1 NC_008229.1 (P44997) Phosphoserine phosphatase (EC 3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase) (PSPase); High confidence in function and specificity; hypothetical protein 427410 serB 4177175 serB Helicobacter acinonychis str. Sheeba hypothetical protein YP_664310.1 426787 R 382638 CDS YP_664311.1 109947083 4176751 complement(427426..427929) 1 NC_008229.1 High confidence in function and specificity; ferritin 427929 pfr 4176751 pfr Helicobacter acinonychis str. Sheeba ferritin YP_664311.1 427426 R 382638 CDS YP_664312.1 109947084 4177016 complement(428117..428485) 1 NC_008229.1 ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]; hypothetical protein; alpha-1,3/4-fucosyltransferase N-terminal fragment 428485 fucT N-terminal fragment 4177016 fucT N-terminal fragment Helicobacter acinonychis str. Sheeba alpha-1,3/4-fucosyltransferase N-terminal fragment YP_664312.1 428117 R 382638 CDS YP_664313.1 109947085 4176645 complement(428495..431305) 1 NC_008229.1 High confidence in function and specificity; cytochrome c biogenesis protein 431305 ycf5 4176645 ycf5 Helicobacter acinonychis str. Sheeba cytochrome c biogenesis protein YP_664313.1 428495 R 382638 CDS YP_664314.1 109947086 4176384 complement(431315..431989) 1 NC_008229.1 High confidence in function and specificity; disulfide interchange protein 431989 dsbC 4176384 dsbC Helicobacter acinonychis str. Sheeba disulfide interchange protein YP_664314.1 431315 R 382638 CDS YP_664315.1 109947087 4177426 complement(432073..433089) 1 NC_008229.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 433089 hemH 4177426 hemH Helicobacter acinonychis str. Sheeba ferrochelatase YP_664315.1 432073 R 382638 CDS YP_664316.1 109947088 4176156 433155..433574 1 NC_008229.1 hypothetical protein 433574 4176156 Hac_0491 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664316.1 433155 D 382638 CDS YP_664317.1 109947089 4176157 433575..434255 1 NC_008229.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 434255 4176157 Hac_0492 Helicobacter acinonychis str. Sheeba 16S ribosomal RNA methyltransferase RsmE YP_664317.1 433575 D 382638 CDS YP_664318.1 109947090 4176158 complement(434373..434930) 1 NC_008229.1 hypothetical protein 434930 4176158 Hac_0493 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664318.1 434373 R 382638 CDS YP_664319.1 109947091 4176159 complement(434930..435892) 1 NC_008229.1 (P29749) Modification methylase TthHB8I (EC 2.1.1.72) (Adenine-specific methyltransferase TthHB8I) (M.TthHB8I); hypothetical protein; type II DNA modification enzyme (methyltransferase) 435892 4176159 Hac_0494 Helicobacter acinonychis str. Sheeba type II DNA modification enzyme (methyltransferase) YP_664319.1 434930 R 382638 CDS YP_664320.1 109947092 4176407 complement(435972..436538) 1 NC_008229.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 436538 dcd 4176407 dcd Helicobacter acinonychis str. Sheeba deoxycytidine triphosphate deaminase YP_664320.1 435972 R 382638 CDS YP_664321.1 109947093 4177691 436662..437135 1 NC_008229.1 (Q9PKR5) Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP); High confidence in function and specificity; acetyl-CoA carboxylase biotin carboxyl carrier protein 437135 accB 4177691 accB Helicobacter acinonychis str. Sheeba acetyl-CoA carboxylase biotin carboxyl carrier protein YP_664321.1 436662 D 382638 CDS YP_664322.1 109947094 4177692 437141..438508 1 NC_008229.1 biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 438508 accC 4177692 accC Helicobacter acinonychis str. Sheeba biotin carboxylase YP_664322.1 437141 D 382638 CDS YP_664323.1 109947095 4176218 438530..438949 1 NC_008229.1 hypothetical protein 438949 4176218 Hac_0498 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664323.1 438530 D 382638 CDS YP_664324.1 109947096 4176219 438931..439464 1 NC_008229.1 hypothetical protein 439464 4176219 Hac_0499 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664324.1 438931 D 382638 CDS YP_664325.1 109947097 4176220 439482..439652 1 NC_008229.1 hypothetical protein 439652 4176220 Hac_0500 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664325.1 439482 D 382638 CDS YP_664326.1 109947098 4176703 complement(439904..440122) 1 NC_008229.1 vacuolating cytotoxin (vacA) pseudogene; High confidence in function and specificity; vacuolating cytotoxin fragment 13 440122 vacA beta fragment 13 4176703 vacA beta fragment 13 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 13 YP_664326.1 439904 R 382638 CDS YP_664327.1 109947099 4176702 complement(440209..440343) 1 NC_008229.1 vacuolating cytotoxin (vacA) pseudogene; hypothetical protein; vacuolating cytotoxin fragment 12 440343 vacA beta fragment 12 4176702 vacA beta fragment 12 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 12 YP_664327.1 440209 R 382638 CDS YP_664328.1 109947100 4176701 complement(440368..440568) 1 NC_008229.1 vacuolating cytotoxin (vacA) pseudogene; High confidence in function and specificity; vacuolating cytotoxin fragment 11 440568 vacA beta fragment 11 4176701 vacA beta fragment 11 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 11 YP_664328.1 440368 R 382638 CDS YP_664329.1 109947101 4176700 complement(440584..440856) 1 NC_008229.1 vacuolating cytotoxin (vacA) pseudogene; High confidence in function and specificity; vacuolating cytotoxin fragment 10 440856 vacA beta fragment 10 4176700 vacA beta fragment 10 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 10 YP_664329.1 440584 R 382638 CDS YP_664330.1 109947102 4176614 complement(440927..441049) 1 NC_008229.1 vacuolating cytotoxin (vacA) pseudogene; hypothetical protein; vacuolating cytotoxin fragment 9 441049 vacA beta fragment 9 4176614 vacA beta fragment 9 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 9 YP_664330.1 440927 R 382638 CDS YP_664331.1 109947103 4176613 complement(441195..441515) 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin fragment 8 441515 vacA beta fragment 8 4176613 vacA beta fragment 8 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 8 YP_664331.1 441195 R 382638 CDS YP_664332.1 109947104 4176612 complement(441532..442062) 1 NC_008229.1 vacuolating cytotoxin (vacA) pseudogene, partial sequence; High confidence in function and specificity; vacuolating cytotoxin fragment 7 442062 vacA beta fragment 7 4176612 vacA beta fragment 7 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 7 YP_664332.1 441532 R 382638 CDS YP_664333.1 109947105 4176611 complement(442266..442544) 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin fragment 6 442544 vacA beta fragment 6 4176611 vacA beta fragment 6 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 6 YP_664333.1 442266 R 382638 CDS YP_664334.1 109947106 4176610 complement(442614..442829) 1 NC_008229.1 (Q9ZKW5) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin fragment 5 442829 vacA beta fragment 5 4176610 vacA beta fragment 5 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 5 YP_664334.1 442614 R 382638 CDS YP_664335.1 109947107 4176609 complement(442842..442958) 1 NC_008229.1 (P55981) Vacuolating cytotoxin precursor; hypothetical protein; vacuolating cytotoxin fragment 4 442958 vacA beta fragment 4 4176609 vacA beta fragment 4 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 4 YP_664335.1 442842 R 382638 CDS YP_664336.1 109947108 4176608 complement(442980..443192) 1 NC_008229.1 (Q48258) Vacuolating cytotoxin precursor; Conserved hypothetical protein; vacuolating cytotoxin fragment 3 443192 vacA beta fragment 3 4176608 vacA beta fragment 3 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 3 YP_664336.1 442980 R 382638 CDS YP_664337.1 109947109 4176704 complement(443167..443457) 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor, vacA fragment-2; High confidence in function and specificity; vacuolating cytotoxin fragment 2 443457 vacA beta fragment 2 4176704 vacA beta fragment 2 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 2 YP_664337.1 443167 R 382638 CDS YP_664338.1 109947110 4176699 complement(443524..443718) 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor,vacuolating cytotoxin (vacA) pseudogene, partial sequence; High confidence in function and specificity; vacuolating cytotoxin fragment 1 443718 vacA beta fragment 1 4176699 vacA beta fragment 1 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin fragment 1 YP_664338.1 443524 R 382638 CDS YP_664339.1 109947111 4176221 444255..444863 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 444863 4176221 Hac_0517 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664339.1 444255 D 382638 CDS YP_664340.1 109947112 4176222 444860..445984 1 NC_008229.1 High confidence in function and specificity; sugar nucleotide biosynthesis 445984 4176222 Hac_0518 Helicobacter acinonychis str. Sheeba sugar nucleotide biosynthesis YP_664340.1 444860 D 382638 CDS YP_664341.1 109947113 4176770 445987..446709 1 NC_008229.1 Specificity unclear; endonuclease MjaVIP 446709 mjaVIP 4176770 mjaVIP Helicobacter acinonychis str. Sheeba endonuclease MjaVIP YP_664341.1 445987 D 382638 CDS YP_664342.1 109947114 4176883 446706..447464 1 NC_008229.1 High confidence in function and specificity; adenine specific DNA methyltransferase 447464 hpaim 4176883 hpaim Helicobacter acinonychis str. Sheeba adenine specific DNA methyltransferase YP_664342.1 446706 D 382638 CDS YP_664343.1 109947115 4176607 447538..450108 1 NC_008229.1 (Q9ZMH1) ClpB protein; High confidence in function and specificity; ATP-dependent Clp protease, ATP-binding subunit ClpB 450108 clpB 4176607 clpB Helicobacter acinonychis str. Sheeba ATP-dependent Clp protease, ATP-binding subunit ClpB YP_664343.1 447538 D 382638 CDS YP_664344.1 109947116 4176593 450166..450885 1 NC_008229.1 (P44202) Hypothetical cytochrome c-type biogenesis protein HI1454; High confidence in function and specificity; cytochrome c-type biogenesis protein ccdA 450885 ccdA 4176593 ccdA Helicobacter acinonychis str. Sheeba cytochrome c-type biogenesis protein ccdA YP_664344.1 450166 D 382638 CDS YP_664345.1 109947117 4177750 450895..452028 1 NC_008229.1 High confidence in function and specificity; dihydroorotase 452028 pyrC 4177750 pyrC Helicobacter acinonychis str. Sheeba dihydroorotase YP_664345.1 450895 D 382638 CDS YP_664346.1 109947118 4176223 452016..453242 1 NC_008229.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 453242 4176223 Hac_0525 Helicobacter acinonychis str. Sheeba chlorohydrolase YP_664346.1 452016 D 382638 CDS YP_664347.1 109947119 4176224 453381..453623 1 NC_008229.1 hypothetical protein 453623 4176224 Hac_0526 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664347.1 453381 D 382638 CDS YP_664348.1 109947120 4176225 453666..454949 1 NC_008229.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 454949 4176225 Hac_0527 Helicobacter acinonychis str. Sheeba (dimethylallyl)adenosine tRNA methylthiotransferase YP_664348.1 453666 D 382638 CDS YP_664349.1 109947121 4176226 454985..455632 1 NC_008229.1 Specificity unclear; hypothetical protein 455632 4176226 Hac_0528 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664349.1 454985 D 382638 CDS YP_664350.1 109947122 4176227 455625..456608 1 NC_008229.1 hypothetical protein 456608 4176227 Hac_0529 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664350.1 455625 D 382638 CDS YP_664351.1 109947123 4176228 456598..457119 1 NC_008229.1 hypothetical protein 457119 4176228 Hac_0530 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664351.1 456598 D 382638 CDS YP_664352.1 109947124 4176229 457139..457669 1 NC_008229.1 hypothetical protein 457669 4176229 Hac_0531 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664352.1 457139 D 382638 CDS YP_664353.1 109947125 4176230 457678..458076 1 NC_008229.1 (Q9ZMG1) similar to Hypothetical protein JHP0259; Specificity unclear; hypothetical protein 458076 4176230 Hac_0532 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664353.1 457678 D 382638 CDS YP_664354.1 109947126 4177699 458113..459408 1 NC_008229.1 Function unclear; ATP-dependent nuclease 459408 addB 4177699 addB Helicobacter acinonychis str. Sheeba ATP-dependent nuclease YP_664354.1 458113 D 382638 CDS YP_664355.1 109947127 4177495 459396..459953 1 NC_008229.1 (Q9PI11) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); High confidence in function and specificity; indole-3-glycerol phosphate synthase 459953 trpC 4177495 trpC Helicobacter acinonychis str. Sheeba indole-3-glycerol phosphate synthase YP_664355.1 459396 D 382638 CDS YP_664356.1 109947128 4176810 460009..460260 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 460260 fdx 4176810 fdx Helicobacter acinonychis str. Sheeba hypothetical protein YP_664356.1 460009 D 382638 CDS YP_664357.1 109947129 4176557 460271..461725 1 NC_008229.1 (P25552) Guanosine-5-triphosphate3-diphosphate pyrophosphatase (EC 3.6.1.40) (Guanosine pentaphosphate phosphohydrolase) (pppGpp-5-phosphohydrolase); High confidence in function and specificity; hypothetical protein 461725 ppx 4176557 ppx Helicobacter acinonychis str. Sheeba hypothetical protein YP_664357.1 460271 D 382638 CDS YP_664358.1 109947130 4177077 461722..462732 1 NC_008229.1 (P37692) ADP-heptose--LPS heptosyltransferase II (EC 2.4.1.-); High confidence in function and specificity; lipopolysaccharide heptosyltransferase-1 462732 rfaC 4177077 rfaC Helicobacter acinonychis str. Sheeba lipopolysaccharide heptosyltransferase-1 YP_664358.1 461722 D 382638 CDS YP_664359.1 109947131 4176231 462729..463715 1 NC_008229.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 463715 4176231 Hac_0538 Helicobacter acinonychis str. Sheeba lipid A biosynthesis lauroyl acyltransferase YP_664359.1 462729 D 382638 CDS YP_664360.1 109947132 4177473 complement(463980..465095) 1 NC_008229.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 465095 tgt 4177473 tgt Helicobacter acinonychis str. Sheeba queuine tRNA-ribosyltransferase YP_664360.1 463980 R 382638 CDS YP_664361.1 109947133 4176232 465151..466587 1 NC_008229.1 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.24.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like; Function unclear; hypothetical protein 466587 4176232 Hac_0542 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664361.1 465151 D 382638 CDS YP_664362.1 109947134 4176934 466592..467623 1 NC_008229.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 467623 aroB 4176934 aroB Helicobacter acinonychis str. Sheeba 3-dehydroquinate synthase YP_664362.1 466592 D 382638 CDS YP_664363.1 109947135 4176233 467629..469170 1 NC_008229.1 (Q58111) similar to Hypothetical UPF0003 protein MJ0700; Specificity unclear; hypothetical protein 469170 4176233 Hac_0544 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664363.1 467629 D 382638 CDS YP_664364.1 109947136 4176234 469176..470432 1 NC_008229.1 (Q9ZMF0) similar to Hypothetical protein JHP0270; Specificity unclear; hypothetical protein 470432 4176234 Hac_0545 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664364.1 469176 D 382638 CDS YP_664365.1 109947137 4176527 470419..472071 1 NC_008229.1 (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.24.-) (FtsHCP); High confidence in function and specificity; cell division protein FtsH3 472071 ftsH 4176527 ftsH Helicobacter acinonychis str. Sheeba cell division protein FtsH3 YP_664365.1 470419 D 382638 CDS YP_664366.1 109947138 4176235 472075..472593 1 NC_008229.1 hypothetical protein 472593 4176235 Hac_0547 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664366.1 472075 D 382638 CDS YP_664367.1 109947139 4176236 472606..473091 1 NC_008229.1 hypothetical protein 473091 4176236 Hac_0548 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664367.1 472606 D 382638 CDS YP_664368.1 109947140 4176698 473155..481887 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; Specificity unclear; vacuolating cytotoxin VacA 481887 vacA 4176698 vacA Helicobacter acinonychis str. Sheeba vacuolating cytotoxin VacA YP_664368.1 473155 D 382638 CDS YP_664369.1 109947141 4177628 481935..483152 1 NC_008229.1 (Q9ZME5) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP decarboxylase); High confidence in function and specificity; hypothetical protein 483152 lysA 4177628 lysA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664369.1 481935 D 382638 CDS YP_664370.1 109947142 4177378 483157..483441 1 NC_008229.1 (P43902) T-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM); Prephenate dehydrogenase (EC 1.3.1.12) (PDH)]; High confidence in function and specificity; hypothetical protein 483441 4177378 Hac_0551 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664370.1 483157 D 382638 CDS YP_664371.1 109947143 4177379 483454..484326 1 NC_008229.1 (P33275) Hypothetical protein MYCGA3080; Specificity unclear; hypothetical protein 484326 4177379 Hac_0552 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664371.1 483454 D 382638 CDS YP_664372.1 109947144 4177333 484327..486018 1 NC_008229.1 (P05041) Para-aminobenzoate synthase component I (EC 6.3.5.8) (ADC synthase)[EC:6.3.5.8 4.1.3.38]; High confidence in function and specificity; para-aminobenzoate synthetase component I 486018 pabB 4177333 pabB Helicobacter acinonychis str. Sheeba para-aminobenzoate synthetase component I YP_664372.1 484327 D 382638 CDS YP_664373.1 109947145 4177703 486213..487232 1 NC_008229.1 aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase 487232 amiE 4177703 amiE Helicobacter acinonychis str. Sheeba acylamide amidohydrolase YP_664373.1 486213 D 382638 CDS YP_664374.1 109947146 4177251 complement(487312..489795) 1 NC_008229.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 489795 flgL 4177251 flgL Helicobacter acinonychis str. Sheeba flagellar hook-associated protein FlgL YP_664374.1 487312 R 382638 CDS YP_664375.1 109947147 4176851 490041..490355 1 NC_008229.1 High confidence in function and specificity; 50S ribosomal protein L21 490355 rplU 4176851 rplU Helicobacter acinonychis str. Sheeba 50S ribosomal protein L21 YP_664375.1 490041 D 382638 CDS YP_664376.1 109947148 4176856 490369..490635 1 NC_008229.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 490635 rpmA 4176856 rpmA Helicobacter acinonychis str. Sheeba 50S ribosomal protein L27 YP_664376.1 490369 D 382638 CDS YP_664377.1 109947149 4176378 490752..492392 1 NC_008229.1 High confidence in function and specificity; dipeptide transport system substrate-binding protein 492392 dppA 4176378 dppA Helicobacter acinonychis str. Sheeba dipeptide transport system substrate-binding protein YP_664377.1 490752 D 382638 CDS YP_664378.1 109947150 4176379 492403..493407 1 NC_008229.1 (P37316) Dipeptide transport system permease dppB; High confidence in function and specificity; dipeptide transport system permease 493407 dppB 4176379 dppB Helicobacter acinonychis str. Sheeba dipeptide transport system permease YP_664378.1 492403 D 382638 CDS YP_664379.1 109947151 4176380 493407..494264 1 NC_008229.1 (P94312) Dipeptide transport system permease dppC; High confidence in function and specificity; dipeptide transport system permease 494264 dppC 4176380 dppC Helicobacter acinonychis str. Sheeba dipeptide transport system permease YP_664379.1 493407 D 382638 CDS YP_664380.1 109947152 4176381 494275..495138 1 NC_008229.1 (P42064) Oligopeptide transport ATP-binding protein appD; High confidence in function and specificity; dipeptide transport system ATP-binding protein 495138 dppD 4176381 dppD Helicobacter acinonychis str. Sheeba dipeptide transport system ATP-binding protein YP_664380.1 494275 D 382638 CDS YP_664381.1 109947153 4176382 495135..495941 1 NC_008229.1 (P37313) Dipeptide transport ATP-binding protein dppF; High confidence in function and specificity; dipeptide transport system ATP-binding protein 495941 dppF 4176382 dppF Helicobacter acinonychis str. Sheeba dipeptide transport system ATP-binding protein YP_664381.1 495135 D 382638 CDS YP_664382.1 109947154 4176465 495956..497038 1 NC_008229.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 497038 obgE 4176465 obgE Helicobacter acinonychis str. Sheeba GTPase ObgE YP_664382.1 495956 D 382638 CDS YP_664383.1 109947155 4177380 497080..498075 1 NC_008229.1 Similar to H. pylori predicted coding region HP0304; hypothetical protein; hypothetical protein 498075 4177380 Hac_0565 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664383.1 497080 D 382638 CDS YP_664384.1 109947156 4177381 500460..500654 1 NC_008229.1 hypothetical protein 500654 4177381 Hac_0567 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664384.1 500460 D 382638 CDS YP_664385.1 109947157 4176434 500799..502844 1 NC_008229.1 outer membrane protein, similar to Hop family; High confidence in function and specificity; outer membrane protein 5 502844 omp5 4176434 omp5 Helicobacter acinonychis str. Sheeba outer membrane protein 5 YP_664385.1 500799 D 382638 CDS YP_664386.1 109947158 4177382 503002..504285 1 NC_008229.1 similar to HP1143; Function unclear; hypothetical protein 504285 4177382 Hac_0571 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664386.1 503002 D 382638 CDS YP_664387.1 109947159 4177383 504345..506780 1 NC_008229.1 Function unclear; hypothetical protein 506780 4177383 Hac_0572 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664387.1 504345 D 382638 CDS YP_664388.1 109947160 4177507 506795..507712 1 NC_008229.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 507712 fmt 4177507 fmt Helicobacter acinonychis str. Sheeba methionyl-tRNA formyltransferase YP_664388.1 506795 D 382638 CDS YP_664389.1 109947161 4177119 507709..508347 1 NC_008229.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 508347 birA 4177119 birA Helicobacter acinonychis str. Sheeba biotin--protein ligase YP_664389.1 507709 D 382638 CDS YP_664390.1 109947162 4176735 508350..509144 1 NC_008229.1 High confidence in function and specificity; partition protein, ParA-like protein 509144 parA 4176735 parA Helicobacter acinonychis str. Sheeba partition protein, ParA-like protein YP_664390.1 508350 D 382638 CDS YP_664391.1 109947163 4176737 509147..510016 1 NC_008229.1 High confidence in function and specificity; chromosome partitioning protein parB 510016 parB 4176737 parB Helicobacter acinonychis str. Sheeba chromosome partitioning protein parB YP_664391.1 509147 D 382638 CDS YP_664392.1 109947164 4177108 510131..510565 1 NC_008229.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 510565 atpF' 4177108 atpF' Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit B' YP_664392.1 510131 D 382638 CDS YP_664393.1 109947165 4177107 510569..511084 1 NC_008229.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 511084 atpF 4177107 atpF Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit B YP_664393.1 510569 D 382638 CDS YP_664394.1 109947166 4177110 511085..511627 1 NC_008229.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 511627 atpH 4177110 atpH Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit delta YP_664394.1 511085 D 382638 CDS YP_664395.1 109947167 4177102 511650..513161 1 NC_008229.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 513161 atpA 4177102 atpA Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit alpha YP_664395.1 511650 D 382638 CDS YP_664396.1 109947168 4177109 513176..514081 1 NC_008229.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 514081 atpG 4177109 atpG Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit gamma YP_664396.1 513176 D 382638 CDS YP_664397.1 109947169 4177105 514109..515509 1 NC_008229.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 515509 atpD 4177105 atpD Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit beta YP_664397.1 514109 D 382638 CDS YP_664398.1 109947170 4177104 515519..515890 1 NC_008229.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 515890 atpC 4177104 atpC Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit epsilon YP_664398.1 515519 D 382638 CDS YP_664399.1 109947171 4177402 515900..516490 1 NC_008229.1 (O25755) biopolymer transport exbB-like protein; High confidence in function and specificity; biopolymer transport protein 516490 exbB 4177402 exbB Helicobacter acinonychis str. Sheeba biopolymer transport protein YP_664399.1 515900 D 382638 CDS YP_664400.1 109947172 4177405 516519..516920 1 NC_008229.1 (Q9ZK84) biopolymer transport exbD-like protein; High confidence in function and specificity; hypothetical protein 516920 exbD 4177405 exbD Helicobacter acinonychis str. Sheeba hypothetical protein YP_664400.1 516519 D 382638 CDS YP_664401.1 109947173 4177384 516939..517721 1 NC_008229.1 similar to hypothetical protein jhp1056 -Helicobacter pylori (strain J99); High confidence in function and specificity; hypothetical protein 517721 4177384 Hac_0586 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664401.1 516939 D 382638 CDS YP_664402.1 109947174 4177485 517718..518971 1 NC_008229.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 518971 tolB 4177485 tolB Helicobacter acinonychis str. Sheeba translocation protein TolB YP_664402.1 517718 D 382638 CDS YP_664403.1 109947175 4177335 519050..519595 1 NC_008229.1 (P43036) Peptidoglycan-associated lipoprotein precursor, OmpA family, palA, excC; Function unclear; peptidoglycan-associated lipoprotein 519595 pal 4177335 pal Helicobacter acinonychis str. Sheeba peptidoglycan-associated lipoprotein YP_664403.1 519050 D 382638 CDS YP_664404.1 109947176 4177385 519603..520595 1 NC_008229.1 hypothetical protein 520595 4177385 Hac_0589 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664404.1 519603 D 382638 CDS YP_664405.1 109947177 4177457 520582..521136 1 NC_008229.1 (Q9ZK89) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC 5.2.1.8) (PPIase) (Rotamase); High confidence in function and specificity; FKBP-type peptidyl-prolyl cis-trans isomerase 521136 slyD 4177457 slyD Helicobacter acinonychis str. Sheeba FKBP-type peptidyl-prolyl cis-trans isomerase YP_664405.1 520582 D 382638 CDS YP_664406.1 109947178 4177386 521165..521371 1 NC_008229.1 hypothetical protein 521371 4177386 Hac_0591 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664406.1 521165 D 382638 CDS YP_664407.1 109947179 4177252 521438..521641 1 NC_008229.1 FlgM protein 521641 flgM 4177252 flgM Helicobacter acinonychis str. Sheeba FlgM protein YP_664407.1 521438 D 382638 CDS YP_664408.1 109947180 4177120 521790..522737 1 NC_008229.1 (P34877) Modification methylase ScrFIA (EC 2.1.1.37) (Cytosine-specific methyltransferase ScrFIA) (M.ScrFIA) (M.ScrFI-A); High confidence in function and specificity; C-5 cytosine-specific DNA methylase 522737 BSP6IM 4177120 BSP6IM Helicobacter acinonychis str. Sheeba C-5 cytosine-specific DNA methylase YP_664408.1 521790 D 382638 CDS YP_664409.1 109947181 4177387 522888..523322 1 NC_008229.1 hypothetical protein 523322 4177387 Hac_0596 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664409.1 522888 D 382638 CDS YP_664410.1 109947182 4177250 523324..525144 1 NC_008229.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 525144 flgK 4177250 flgK Helicobacter acinonychis str. Sheeba flagellar hook-associated protein FlgK YP_664410.1 523324 D 382638 CDS YP_664411.1 109947183 4177762 525497..527200 1 NC_008229.1 (P36267) Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2); High confidence in function and specificity; hypothetical protein 527200 ggt 4177762 ggt Helicobacter acinonychis str. Sheeba hypothetical protein YP_664411.1 525497 D 382638 CDS YP_664412.1 109947184 4177388 527458..528234 1 NC_008229.1 Function unclear; hypothetical protein 528234 4177388 Hac_0600 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664412.1 527458 D 382638 CDS YP_664413.1 109947185 4177389 528705..530573 1 NC_008229.1 similar to HP0415; High confidence in function and specificity; hypothetical protein 530573 4177389 Hac_0603 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664413.1 528705 D 382638 CDS YP_664414.1 109947186 4176598 complement(530576..531745) 1 NC_008229.1 High confidence in function and specificity; cyclopropane-fatty-acyl-phospholipid synthase 531745 cfa 4176598 cfa Helicobacter acinonychis str. Sheeba cyclopropane-fatty-acyl-phospholipid synthase YP_664414.1 530576 R 382638 CDS YP_664415.1 109947187 4176763 531922..533853 1 NC_008229.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 533853 metS 4176763 metS Helicobacter acinonychis str. Sheeba methionyl-tRNA synthetase YP_664415.1 531922 D 382638 CDS YP_664416.1 109947188 4177390 533854..534861 1 NC_008229.1 hypothetical protein 534861 4177390 Hac_0606 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664416.1 533854 D 382638 CDS YP_664417.1 109947189 4177391 534865..535653 1 NC_008229.1 High confidence in function and specificity; methyltransferase 535653 4177391 Hac_0607 Helicobacter acinonychis str. Sheeba methyltransferase YP_664417.1 534865 D 382638 CDS YP_664418.1 109947190 4177392 535675..536103 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 536103 4177392 Hac_0608 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664418.1 535675 D 382638 CDS YP_664419.1 109947191 4176590 536110..537282 1 NC_008229.1 polysaccharide biosynthesis protein; Function unclear; type 1 capsular polysaccharide biosynthesis protein J 537282 capJ 4176590 capJ Helicobacter acinonychis str. Sheeba type 1 capsular polysaccharide biosynthesis protein J YP_664419.1 536110 D 382638 CDS YP_664420.1 109947192 4177460 537294..539141 1 NC_008229.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 539141 speA 4177460 speA Helicobacter acinonychis str. Sheeba arginine decarboxylase YP_664420.1 537294 D 382638 CDS YP_664421.1 109947193 4177393 complement(539236..540135) 1 NC_008229.1 hypothetical protein 540135 4177393 Hac_0611 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664421.1 539236 R 382638 CDS YP_664422.1 109947194 4177226 complement(540292..540471) 1 NC_008229.1 hypothetical protein 540471 fragment 2 4177226 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664422.1 540292 R 382638 CDS YP_664423.1 109947195 4176344 complement(540527..540883) 1 NC_008229.1 fragment; hypothetical protein; hypothetical protein 540883 fragment 1 4176344 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664423.1 540527 R 382638 CDS YP_664424.1 109947196 4177394 complement(540978..541400) 1 NC_008229.1 hypothetical protein 541400 4177394 Hac_0615 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664424.1 540978 R 382638 CDS YP_664425.1 109947197 4177395 complement(541411..542136) 1 NC_008229.1 Function unclear; hypothetical protein 542136 4177395 Hac_0616 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664425.1 541411 R 382638 CDS YP_664426.1 109947198 4177227 complement(542169..542294) 1 NC_008229.1 hypothetical protein 542294 fragment 2 4177227 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664426.1 542169 R 382638 CDS YP_664427.1 109947199 4176345 complement(542287..542610) 1 NC_008229.1 hypothetical protein 542610 fragment 1 4176345 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664427.1 542287 R 382638 CDS YP_664428.1 109947200 4177396 546569..546895 1 NC_008229.1 hypothetical protein 546895 4177396 Hac_0620 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664428.1 546569 D 382638 CDS YP_664429.1 109947201 4177397 547037..547225 1 NC_008229.1 hypothetical protein 547225 4177397 Hac_0621 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664429.1 547037 D 382638 CDS YP_664430.1 109947202 4176647 547252..547431 1 NC_008229.1 hypothetical protein 547431 4176647 Hac_0622 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664430.1 547252 D 382638 CDS YP_664431.1 109947203 4176648 547433..547861 1 NC_008229.1 hypothetical protein 547861 4176648 Hac_0623 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664431.1 547433 D 382638 CDS YP_664432.1 109947204 4176649 548265..549089 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 549089 4176649 Hac_0625 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664432.1 548265 D 382638 CDS YP_664433.1 109947205 4176346 549213..549647 1 NC_008229.1 fragment; Function unclear; hypothetical protein 549647 fragment 1 4176346 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664433.1 549213 D 382638 CDS YP_664434.1 109947206 4176650 549678..550943 1 NC_008229.1 Region start changed from 550041 to 549678 (363 bases); hypothetical protein 550943 4176650 Hac_0627 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664434.1 549678 D 382638 CDS YP_664435.1 109947207 4176347 551114..551233 1 NC_008229.1 hypothetical protein 551233 fragment 1 4176347 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664435.1 551114 D 382638 CDS YP_664436.1 109947208 4177228 551270..551608 1 NC_008229.1 hypothetical protein 551608 fragment 2 4177228 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664436.1 551270 D 382638 CDS YP_664437.1 109947209 4177280 551739..552182 1 NC_008229.1 hypothetical protein 552182 fragment 3 4177280 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664437.1 551739 D 382638 CDS YP_664438.1 109947210 4177008 complement(552517..553674) 1 NC_008229.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 553674 ftsZ 4177008 ftsZ Helicobacter acinonychis str. Sheeba cell division protein FtsZ YP_664438.1 552517 R 382638 CDS YP_664439.1 109947211 4176525 complement(553808..555289) 1 NC_008229.1 (Q9ZKM3) Cell division protein ftsA; High confidence in function and specificity; cell division protein FtsA 555289 ftsA 4176525 ftsA Helicobacter acinonychis str. Sheeba cell division protein FtsA YP_664439.1 553808 R 382638 CDS YP_664440.1 109947212 4176651 complement(555305..556768) 1 NC_008229.1 Function unclear; hypothetical protein 556768 4176651 Hac_0634 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664440.1 555305 R 382638 CDS YP_664441.1 109947213 4177113 556896..558227 1 NC_008229.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 558227 bioA 4177113 bioA Helicobacter acinonychis str. Sheeba adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_664441.1 556896 D 382638 CDS YP_664442.1 109947214 4177062 558272..558994 1 NC_008229.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 558994 pyrH 4177062 pyrH Helicobacter acinonychis str. Sheeba uridylate kinase YP_664442.1 558272 D 382638 CDS YP_664443.1 109947215 4176866 559034..559258 1 NC_008229.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 559258 rpoZ 4176866 rpoZ Helicobacter acinonychis str. Sheeba DNA-directed RNA polymerase subunit omega YP_664443.1 559034 D 382638 CDS YP_664444.1 109947216 4177462 559245..561566 1 NC_008229.1 High confidence in function and specificity; GTP pyrophosphokinase 561566 spoT 4177462 spoT Helicobacter acinonychis str. Sheeba GTP pyrophosphokinase YP_664444.1 559245 D 382638 CDS YP_664445.1 109947217 4176679 561591..562799 1 NC_008229.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 562799 tyrS 4176679 tyrS Helicobacter acinonychis str. Sheeba tyrosyl-tRNA synthetase YP_664445.1 561591 D 382638 CDS YP_664446.1 109947218 4176652 562815..563906 1 NC_008229.1 Specificity unclear; hypothetical protein 563906 4176652 Hac_0640 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664446.1 562815 D 382638 CDS YP_664447.1 109947219 4176928 563913..565247 1 NC_008229.1 (Q9RMZ0) Hypothetical cell-wall amidase pXO2-42 precursor (EC 3.5.1.28); High confidence in function and specificity; hypothetical protein 565247 amiA 4176928 amiA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664447.1 563913 D 382638 CDS YP_664448.1 109947220 4176653 565266..566003 1 NC_008229.1 hypothetical protein 566003 4176653 Hac_0642 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664448.1 565266 D 382638 CDS YP_664449.1 109947221 4176654 complement(566008..566691) 1 NC_008229.1 Function unclear; hypothetical protein 566691 4176654 Hac_0643 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664449.1 566008 R 382638 CDS YP_664450.1 109947222 4177695 566823..569381 1 NC_008229.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 569381 acnB 4177695 acnB Helicobacter acinonychis str. Sheeba bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_664450.1 566823 D 382638 CDS YP_664451.1 109947223 4177254 complement(570002..571078) 1 NC_008229.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 571078 flhB 4177254 flhB Helicobacter acinonychis str. Sheeba flagellar biosynthesis protein FlhB YP_664451.1 570002 R 382638 CDS YP_664452.1 109947224 4176348 571615..571722 1 NC_008229.1 hypothetical protein 571722 fragment 1 4176348 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664452.1 571615 D 382638 CDS YP_664453.1 109947225 4177229 571734..572075 1 NC_008229.1 hypothetical protein 572075 fragment 2 4177229 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664453.1 571734 D 382638 CDS YP_664454.1 109947226 4176336 572195..572311 1 NC_008229.1 hypothetical protein 572311 fragment 4176336 fragment Helicobacter acinonychis str. Sheeba hypothetical protein YP_664454.1 572195 D 382638 CDS YP_664455.1 109947227 4176349 572327..572512 1 NC_008229.1 fragment; hypothetical protein; hypothetical protein 572512 fragment 1 4176349 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664455.1 572327 D 382638 CDS YP_664456.1 109947228 4177230 572509..572628 1 NC_008229.1 hypothetical protein 572628 fragment 2 4177230 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664456.1 572509 D 382638 CDS YP_664457.1 109947229 4177281 572660..572980 1 NC_008229.1 fragment; hypothetical protein; hypothetical protein 572980 fragment 3 4177281 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664457.1 572660 D 382638 CDS YP_664458.1 109947230 4177007 complement(573198..574079) 1 NC_008229.1 (Q9ZL80) Cell division protein ftsY homolog; High confidence in function and specificity; cell division protein 574079 ftsY 4177007 ftsY Helicobacter acinonychis str. Sheeba cell division protein YP_664458.1 573198 R 382638 CDS YP_664459.1 109947231 4176655 complement(574085..574636) 1 NC_008229.1 hypothetical protein 574636 4176655 Hac_0654 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664459.1 574085 R 382638 CDS YP_664460.1 109947232 4176656 574761..575402 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 575402 4176656 Hac_0655 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664460.1 574761 D 382638 CDS YP_664461.1 109947233 4176657 575380..576891 1 NC_008229.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 576891 4176657 Hac_0656 Helicobacter acinonychis str. Sheeba phosphodiesterase YP_664461.1 575380 D 382638 CDS YP_664462.1 109947234 4176658 complement(576898..578187) 1 NC_008229.1 (Q9WZS2) Probable multidrug resistance protein norM (Na(+)/drug antiporter) (Multidrug-efflux transporter); High confidence in function and specificity; hypothetical protein 578187 4176658 Hac_0657 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664462.1 576898 R 382638 CDS YP_664463.1 109947235 4176659 complement(578214..579527) 1 NC_008229.1 (P46231) Hypothetical protein VP2115 (ORF3); Specificity unclear; permease 579527 4176659 Hac_0658 Helicobacter acinonychis str. Sheeba permease YP_664463.1 578214 R 382638 CDS YP_664464.1 109947236 4176660 complement(579629..580510) 1 NC_008229.1 Specificity unclear; beta-alanine synthetase 580510 4176660 Hac_0661 Helicobacter acinonychis str. Sheeba beta-alanine synthetase YP_664464.1 579629 R 382638 CDS YP_664465.1 109947237 4176661 complement(580514..580660) 1 NC_008229.1 hypothetical protein 580660 4176661 Hac_0662 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664465.1 580514 R 382638 CDS YP_664466.1 109947238 4176721 complement(580662..581333) 1 NC_008229.1 High confidence in function and specificity; molybdopterin biosynthesis protein 581333 moeB 4176721 moeB Helicobacter acinonychis str. Sheeba molybdopterin biosynthesis protein YP_664466.1 580662 R 382638 CDS YP_664467.1 109947239 4176662 complement(581387..581626) 1 NC_008229.1 hypothetical protein 581626 4176662 Hac_0664 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664467.1 581387 R 382638 CDS YP_664468.1 109947240 4177505 complement(581613..581993) 1 NC_008229.1 flagellin specific chaperone; flagellar protein FliS 581993 fliS 4177505 fliS Helicobacter acinonychis str. Sheeba flagellar protein FliS YP_664468.1 581613 R 382638 CDS YP_664469.1 109947241 4177257 complement(582038..584095) 1 NC_008229.1 involved in flagellin assembly; flagellar capping protein 584095 fliD 4177257 fliD Helicobacter acinonychis str. Sheeba flagellar capping protein YP_664469.1 582038 R 382638 CDS YP_664470.1 109947242 4176827 complement(584113..584478) 1 NC_008229.1 possibly involved in flagella export; flagellar protein FlaG 584478 flaG 4176827 flaG Helicobacter acinonychis str. Sheeba flagellar protein FlaG YP_664470.1 584113 R 382638 CDS YP_664471.1 109947243 4176663 complement(584572..585759) 1 NC_008229.1 Function unclear; hypothetical protein 585759 4176663 Hac_0668 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664471.1 584572 R 382638 CDS YP_664472.1 109947244 4177006 complement(585762..586574) 1 NC_008229.1 (P95357) Cell division protein ftsX homolog; High confidence in function and specificity; cell division protein FtsX 586574 ftsX 4177006 ftsX Helicobacter acinonychis str. Sheeba cell division protein FtsX YP_664472.1 585762 R 382638 CDS YP_664473.1 109947245 4176526 complement(586561..587232) 1 NC_008229.1 ftsE; cell division protein; High confidence in function and specificity; cell division ABC transporter ATP-binding protein FtsE 587232 ftsE 4176526 ftsE Helicobacter acinonychis str. Sheeba cell division ABC transporter ATP-binding protein FtsE YP_664473.1 586561 R 382638 CDS YP_664474.1 109947246 4176664 complement(587207..588403) 1 NC_008229.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 588403 trmB 4176664 trmB Helicobacter acinonychis str. Sheeba tRNA (guanine-N(7)-)-methyltransferase YP_664474.1 587207 R 382638 CDS YP_664475.1 109947247 4176665 complement(588414..589643) 1 NC_008229.1 FIBRONECTIN DOMAIN-CONTAINING LIPOPROTEIN; Function unclear; fibronectin domain-containing lipoprotein 589643 4176665 Hac_0672 Helicobacter acinonychis str. Sheeba fibronectin domain-containing lipoprotein YP_664475.1 588414 R 382638 CDS YP_664476.1 109947248 4177358 complement(589624..590604) 1 NC_008229.1 High confidence in function and specificity; pseudouridine synthase 590604 4177358 Hac_0673 Helicobacter acinonychis str. Sheeba pseudouridine synthase YP_664476.1 589624 R 382638 CDS YP_664477.1 109947249 4176350 591090..591614 1 NC_008229.1 fragment; Function unclear; hypothetical protein 591614 fragment 1 4176350 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664477.1 591090 D 382638 CDS YP_664478.1 109947250 4177231 591623..591946 1 NC_008229.1 fragment; hypothetical protein; hypothetical protein 591946 fragment 2 4177231 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664478.1 591623 D 382638 CDS YP_664479.1 109947251 4176830 591969..593114 1 NC_008229.1 (Q9ZLA0) Rod shape-determining protein rodA; High confidence in function and specificity; rod shape-determining protein RodA 593114 rodA 4176830 rodA Helicobacter acinonychis str. Sheeba rod shape-determining protein RodA YP_664479.1 591969 D 382638 CDS YP_664480.1 109947252 4176567 complement(593179..594114) 1 NC_008229.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 594114 prsA 4176567 prsA Helicobacter acinonychis str. Sheeba ribose-phosphate pyrophosphokinase YP_664480.1 593179 R 382638 CDS YP_664481.1 109947253 4177359 complement(594178..594663) 1 NC_008229.1 (Q58276) Hypothetical HIT-like protein MJ0866; Specificity unclear; HIT family protein 594663 4177359 Hac_0678 Helicobacter acinonychis str. Sheeba HIT family protein YP_664481.1 594178 R 382638 CDS YP_664482.1 109947254 4177655 complement(594673..596154) 1 NC_008229.1 (Q8DVE3) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme); High confidence in function and specificity; D-alanyl-D-alanine-adding enzyme 596154 murF 4177655 murF Helicobacter acinonychis str. Sheeba D-alanyl-D-alanine-adding enzyme YP_664482.1 594673 R 382638 CDS YP_664483.1 109947255 4177360 complement(596141..596866) 1 NC_008229.1 Function unclear; 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 596866 4177360 Hac_0680 Helicobacter acinonychis str. Sheeba 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase YP_664483.1 596141 R 382638 CDS YP_664484.1 109947256 4177122 complement(596866..597918) 1 NC_008229.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 597918 ddl 4177122 ddl Helicobacter acinonychis str. Sheeba D-alanyl-alanine synthetase A YP_664484.1 596866 R 382638 CDS YP_664485.1 109947257 4176776 complement(597993..598469) 1 NC_008229.1 (P18200) Phosphatidylglycerophosphatase A (EC 3.1.3.27); Function unclear; phosphatidylglycerophosphatase A 598469 pgpA 4176776 pgpA Helicobacter acinonychis str. Sheeba phosphatidylglycerophosphatase A YP_664485.1 597993 R 382638 CDS YP_664486.1 109947258 4177177 598617..599726 1 NC_008229.1 (Q9ZLA7) aminotransferase JHP0673 (EC 2.6.1.-); High confidence in function and specificity; aminotransferase 599726 serC 4177177 serC Helicobacter acinonychis str. Sheeba aminotransferase YP_664486.1 598617 D 382638 CDS YP_664487.1 109947259 4177270 599735..600196 1 NC_008229.1 High confidence in function and specificity; xanthine-guanine phosphoribosyltransferase 600196 gpt 4177270 gpt Helicobacter acinonychis str. Sheeba xanthine-guanine phosphoribosyltransferase YP_664487.1 599735 D 382638 CDS YP_664488.1 109947260 4177361 600198..601514 1 NC_008229.1 conserved hypothetical protein; High confidence in function and specificity; 2-methylthioadenine synthetase 601514 4177361 Hac_0685 Helicobacter acinonychis str. Sheeba 2-methylthioadenine synthetase YP_664488.1 600198 D 382638 CDS YP_664489.1 109947261 4176351 601618..601890 1 NC_008229.1 similar to HP0733 and jhp0670; hypothetical protein; hypothetical protein 601890 fragment 1 4176351 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664489.1 601618 D 382638 CDS YP_664490.1 109947262 4177232 602565..602891 1 NC_008229.1 similar to HP0733 and jhp0669; hypothetical protein; hypothetical protein 602891 fragment 2 4177232 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664490.1 602565 D 382638 CDS YP_664491.1 109947263 4177282 602876..603052 1 NC_008229.1 similar to HP0733 and jhp0669; hypothetical protein; hypothetical protein 603052 fragment 3 4177282 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664491.1 602876 D 382638 CDS YP_664492.1 109947264 4177298 603090..603317 1 NC_008229.1 similar to HP0732 and jhp0669; hypothetical protein; hypothetical protein 603317 fragment 4 4177298 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664492.1 603090 D 382638 CDS YP_664493.1 109947265 4176352 603438..603617 1 NC_008229.1 fragment; hypothetical protein; hypothetical protein 603617 fragment 1 4176352 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664493.1 603438 D 382638 CDS YP_664494.1 109947266 4177233 603685..604335 1 NC_008229.1 fragment; hypothetical protein; hypothetical protein 604335 fragment 2 4177233 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664494.1 603685 D 382638 CDS YP_664495.1 109947267 4177283 604521..604967 1 NC_008229.1 fragment; hypothetical protein; hypothetical protein 604967 fragment 3 4177283 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664495.1 604521 D 382638 CDS YP_664496.1 109947268 4176511 604927..605133 1 NC_008229.1 fragment; hypothetical protein; hypothetical protein 605133 fragment 4 4176511 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664496.1 604927 D 382638 CDS YP_664497.1 109947269 4177362 605231..605536 1 NC_008229.1 hypothetical protein 605536 4177362 Hac_0695 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664497.1 605231 D 382638 CDS YP_664498.1 109947270 4177363 605545..606615 1 NC_008229.1 ATP /GTP binding protein 606615 4177363 Hac_0696 Helicobacter acinonychis str. Sheeba ATP /GTP binding protein YP_664498.1 605545 D 382638 CDS YP_664499.1 109947271 4177364 606620..607669 1 NC_008229.1 Function unclear; hypothetical protein 607669 4177364 Hac_0697 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664499.1 606620 D 382638 CDS YP_664500.1 109947272 4177023 complement(607818..608816) 1 NC_008229.1 (Q9ZKT0) Glyceraldehyde 3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH); High confidence in function and specificity; glyceraldehyde 3-phosphate dehydrogenase 608816 gapA 4177023 gapA Helicobacter acinonychis str. Sheeba glyceraldehyde 3-phosphate dehydrogenase YP_664500.1 607818 R 382638 CDS YP_664501.1 109947273 4177365 608963..609655 1 NC_008229.1 (Q9ZKT1) Hypothetical protein JHP0854; Specificity unclear; hypothetical protein 609655 4177365 Hac_0699 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664501.1 608963 D 382638 CDS YP_664502.1 109947274 4176591 609754..613155 1 NC_008229.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 613155 carB 4176591 carB Helicobacter acinonychis str. Sheeba carbamoyl phosphate synthase large subunit YP_664502.1 609754 D 382638 CDS YP_664503.1 109947275 4177366 613160..613591 1 NC_008229.1 hypothetical protein 613591 4177366 Hac_0701 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664503.1 613160 D 382638 CDS YP_664504.1 109947276 4176522 613795..616239 1 NC_008229.1 Function unclear; iron-regulated outer membrane protein 616239 frpB 4176522 frpB Helicobacter acinonychis str. Sheeba iron-regulated outer membrane protein YP_664504.1 613795 D 382638 CDS YP_664505.1 109947277 4176871 616446..617984 1 NC_008229.1 hof family outer membrane protein 617984 hofG 4176871 hofG Helicobacter acinonychis str. Sheeba hof family outer membrane protein YP_664505.1 616446 D 382638 CDS YP_664506.1 109947278 4177367 complement(618081..619025) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 619025 4177367 Hac_0704 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664506.1 618081 R 382638 CDS YP_664507.1 109947279 4177436 619297..620883 1 NC_008229.1 hof family outer membrane protein 620883 hofC 4177436 hofC Helicobacter acinonychis str. Sheeba hof family outer membrane protein YP_664507.1 619297 D 382638 CDS YP_664508.1 109947280 4176868 620950..622347 1 NC_008229.1 outer membrane protein; hypothetical protein; hof family outer membrane protein 622347 hofD 4176868 hofD Helicobacter acinonychis str. Sheeba hof family outer membrane protein YP_664508.1 620950 D 382638 CDS YP_664509.1 109947281 4177368 complement(622386..622565) 1 NC_008229.1 hypothetical protein 622565 4177368 Hac_0707 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664509.1 622386 R 382638 CDS YP_664510.1 109947282 4177369 complement(622840..623001) 1 NC_008229.1 hypothetical protein 623001 4177369 Hac_0709 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664510.1 622840 R 382638 CDS YP_664511.1 109947283 4176717 623081..623722 1 NC_008229.1 (P08763) Type III restriction-modification system EcoPI enzyme mod (EC 2.1.1.72) (EcoPI methyltransferase) (M.EcoPI); High confidence in function and specificity; methyltransferase fragment 1 623722 mod fragment 1 4176717 mod fragment 1 Helicobacter acinonychis str. Sheeba methyltransferase fragment 1 YP_664511.1 623081 D 382638 CDS YP_664512.1 109947284 4176720 624151..624711 1 NC_008229.1 (P12364) Type III restriction-modification system EcoP15I enzyme mod (EC 2.1.1.72) (EcoP15I methyltransferase) (M.EcoP15I); High confidence in function and specificity; methyltransferase fragment 2 624711 mod fragment 2 4176720 mod fragment 2 Helicobacter acinonychis str. Sheeba methyltransferase fragment 2 YP_664512.1 624151 D 382638 CDS YP_664513.1 109947285 4177370 624704..626725 1 NC_008229.1 hypothetical protein 626725 4177370 Hac_0712 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664513.1 624704 D 382638 CDS YP_664514.1 109947286 4176435 627521..627931 1 NC_008229.1 hypothetical protein 627931 omp6 fragment 1 4176435 omp6 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664514.1 627521 D 382638 CDS YP_664515.1 109947287 4176436 627951..628058 1 NC_008229.1 hypothetical protein 628058 omp6 fragment 2 4176436 omp6 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664515.1 627951 D 382638 CDS YP_664516.1 109947288 4177371 complement(628089..629099) 1 NC_008229.1 Function unclear; hypothetical protein 629099 4177371 Hac_0715 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664516.1 628089 R 382638 CDS YP_664517.1 109947289 4177372 629230..629847 1 NC_008229.1 Function unclear; hypothetical protein 629847 4177372 Hac_0716 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664517.1 629230 D 382638 CDS YP_664518.1 109947290 4176722 629929..630702 1 NC_008229.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 630702 motA 4176722 motA Helicobacter acinonychis str. Sheeba flagellar motor protein MotA YP_664518.1 629929 D 382638 CDS YP_664519.1 109947291 4176723 630705..631466 1 NC_008229.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 631466 motB 4176723 motB Helicobacter acinonychis str. Sheeba flagellar motor protein MotB YP_664519.1 630705 D 382638 CDS YP_664520.1 109947292 4177373 631480..631911 1 NC_008229.1 hypothetical protein 631911 4177373 Hac_0720 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664520.1 631480 D 382638 CDS YP_664521.1 109947293 4176566 631980..633635 1 NC_008229.1 (O32243) Glycine betaine/carnitine/choline-binding protein precursor (Osmoprotectant-binding protein); High confidence in function and specificity; osmoprotection protein 633635 proWX 4176566 proWX Helicobacter acinonychis str. Sheeba osmoprotection protein YP_664521.1 631980 D 382638 CDS YP_664522.1 109947294 4176565 633639..634289 1 NC_008229.1 glycine betaine/choline/proline transport system ATP-binding protein,proV; glycine betaine/choline/proline transport system ATP-binding protein; High confidence in function and specificity; osmoprotection ATP-binding protein 634289 proV 4176565 proV Helicobacter acinonychis str. Sheeba osmoprotection ATP-binding protein YP_664522.1 633639 D 382638 CDS YP_664523.1 109947295 4177374 634466..634927 1 NC_008229.1 hypothetical protein 634927 4177374 Hac_0724 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664523.1 634466 D 382638 CDS YP_664524.1 109947296 4176696 634928..636712 1 NC_008229.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 636712 uvrC 4176696 uvrC Helicobacter acinonychis str. Sheeba excinuclease ABC subunit C YP_664524.1 634928 D 382638 CDS YP_664525.1 109947297 4176874 636723..637988 1 NC_008229.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 637988 hom 4176874 hom Helicobacter acinonychis str. Sheeba homoserine dehydrogenase YP_664525.1 636723 D 382638 CDS YP_664526.1 109947298 4177375 637989..638333 1 NC_008229.1 similar to HP0823; Specificity unclear; hypothetical protein 638333 4177375 Hac_0727 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664526.1 637989 D 382638 CDS YP_664527.1 109947299 4176672 638420..638740 1 NC_008229.1 (P56430) Thioredoxin (TRX); High confidence in function and specificity; thioredoxin 638740 trxA 4176672 trxA Helicobacter acinonychis str. Sheeba thioredoxin YP_664527.1 638420 D 382638 CDS YP_664528.1 109947300 4176673 638746..639681 1 NC_008229.1 (P56431) Thioredoxin reductase (EC 1.8.1.9) (TRXR); High confidence in function and specificity; hypothetical protein 639681 trxB 4176673 trxB Helicobacter acinonychis str. Sheeba hypothetical protein YP_664528.1 638746 D 382638 CDS YP_664529.1 109947301 4177234 complement(640116..640952) 1 NC_008229.1 similar to HP0629; Function unclear; hypothetical protein 640952 fragment 2 4177234 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664529.1 640116 R 382638 CDS YP_664530.1 109947302 4176353 complement(640927..642174) 1 NC_008229.1 similar to HP0629; Function unclear; hypothetical protein 642174 fragment 1 4176353 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664530.1 640927 R 382638 CDS YP_664531.1 109947303 4177376 complement(642347..643390) 1 NC_008229.1 Specificity unclear; hypothetical protein 643390 4177376 Hac_0733 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664531.1 642347 R 382638 CDS YP_664532.1 109947304 4176403 complement(643402..644607) 1 NC_008229.1 (P41396) 2345-tetrahydropyridine-26-dicarboxylate N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase); Function unclear; hypothetical protein 644607 dapD 4176403 dapD Helicobacter acinonychis str. Sheeba hypothetical protein YP_664532.1 643402 R 382638 CDS YP_664533.1 109947305 4177760 complement(644616..645692) 1 NC_008229.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 645692 ispG 4177760 ispG Helicobacter acinonychis str. Sheeba 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_664533.1 644616 R 382638 CDS YP_664534.1 109947306 4176941 645835..646962 1 NC_008229.1 (O87320) aminotransferase aatC (EC 2.6.1.-); High confidence in function and specificity; hypothetical protein 646962 aspB 4176941 aspB Helicobacter acinonychis str. Sheeba hypothetical protein YP_664534.1 645835 D 382638 CDS YP_664535.1 109947307 4177652 646955..648304 1 NC_008229.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 648304 murC 4177652 murC Helicobacter acinonychis str. Sheeba UDP-N-acetylmuramate--L-alanine ligase YP_664535.1 646955 D 382638 CDS YP_664536.1 109947308 4177377 648304..648666 1 NC_008229.1 hypothetical protein 648666 4177377 Hac_0738 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664536.1 648304 D 382638 CDS YP_664537.1 109947309 4177658 648666..650909 1 NC_008229.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 650909 mutS 4177658 mutS Helicobacter acinonychis str. Sheeba recombination and DNA strand exchange inhibitor protein YP_664537.1 648666 D 382638 CDS YP_664538.1 109947310 4176413 complement(650993..651820) 1 NC_008229.1 (Q57394) Lipooligosaccharide biosynthesis protein lic2B; Function unclear; pbeta-1,4-galactosyltransferase 651820 4176413 Hac_0741 Helicobacter acinonychis str. Sheeba pbeta-1,4-galactosyltransferase YP_664538.1 650993 R 382638 CDS YP_664539.1 109947311 4176760 complement(651902..652486) 1 NC_008229.1 (P40717) Modulator of drug activity B; High confidence in function and specificity; modulator of drug activity B 652486 mdaB 4176760 mdaB Helicobacter acinonychis str. Sheeba modulator of drug activity B YP_664539.1 651902 R 382638 CDS YP_664540.1 109947312 4177547 652608..653765 1 NC_008229.1 High confidence in function and specificity; hydrogenase small chain 653765 hyaA 4177547 hyaA Helicobacter acinonychis str. Sheeba hydrogenase small chain YP_664540.1 652608 D 382638 CDS YP_664541.1 109947313 4177548 653775..655511 1 NC_008229.1 High confidence in function and specificity; hydrogenase large chain 655511 hyaB 4177548 hyaB Helicobacter acinonychis str. Sheeba hydrogenase large chain YP_664541.1 653775 D 382638 CDS YP_664542.1 109947314 4177549 655524..656192 1 NC_008229.1 (P31875) Quinone-reactive Ni/Fe-hydrogenase B-type cytochrome subunit,hyaC, hydC; High confidence in function and specificity; Ni/Fe hydrogenase cytochrome b subunit 656192 hyaC 4177549 hyaC Helicobacter acinonychis str. Sheeba Ni/Fe hydrogenase cytochrome b subunit YP_664542.1 655524 D 382638 CDS YP_664543.1 109947315 4177550 656189..656725 1 NC_008229.1 High confidence in function and specificity; hydrogenase expression/formation protein 656725 hyaD 4177550 hyaD Helicobacter acinonychis str. Sheeba hydrogenase expression/formation protein YP_664543.1 656189 D 382638 CDS YP_664544.1 109947316 4176414 656730..658280 1 NC_008229.1 hydE protein; High confidence in function and specificity; hypothetical protein 658280 4176414 Hac_0748 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664544.1 656730 D 382638 CDS YP_664545.1 109947317 4176415 complement(658286..658642) 1 NC_008229.1 hypothetical protein 658642 4176415 Hac_0749 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664545.1 658286 R 382638 CDS YP_664546.1 109947318 4176416 complement(658724..659167) 1 NC_008229.1 hypothetical protein 659167 4176416 Hac_0750 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664546.1 658724 R 382638 CDS YP_664547.1 109947319 4176437 659340..659699 1 NC_008229.1 hypothetical protein 659699 omp7 fragment 1 4176437 omp7 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664547.1 659340 D 382638 CDS YP_664548.1 109947320 4176438 659786..660298 1 NC_008229.1 outer membrane protein fragment; hypothetical protein; hypothetical protein 660298 omp7 fragment 2 4176438 omp7 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664548.1 659786 D 382638 CDS YP_664549.1 109947321 4176125 complement(660793..661197) 1 NC_008229.1 IS606-like IS element; Specificity unclear; ISHa1942 transposase A-like protein 661197 ISHa1942 tnpA 4176125 ISHa1942 tnpA Helicobacter acinonychis str. Sheeba ISHa1942 transposase A-like protein YP_664549.1 660793 R 382638 CDS YP_664550.1 109947322 4176126 661311..661730 1 NC_008229.1 IS605-like IS element; hypothetical protein; ISHa1942 transposase B fragment 1 661730 ISHa1942 tnpB fragment 1 4176126 ISHa1942 tnpB fragment 1 Helicobacter acinonychis str. Sheeba ISHa1942 transposase B fragment 1 YP_664550.1 661311 D 382638 CDS YP_664551.1 109947323 4176127 661717..662610 1 NC_008229.1 IS606-like IS element; High confidence in function and specificity; ISHa1942 transposase B fragment 2 662610 ISHa1942 tnpB fragment 2 4176127 ISHa1942 tnpB fragment 2 Helicobacter acinonychis str. Sheeba ISHa1942 transposase B fragment 2 YP_664551.1 661717 D 382638 CDS YP_664552.1 109947324 4177074 complement(662617..662868) 1 NC_008229.1 plasmid encoded: H. pylori HPM8, pHPM8;,2. H. pylori P8, pHel4; hypothetical protein; replication initiation protein A, N-terminal fragment 662868 repA fragment 4177074 repA fragment Helicobacter acinonychis str. Sheeba replication initiation protein A, N-terminal fragment YP_664552.1 662617 R 382638 CDS YP_664553.1 109947325 4176121 complement(663510..663608) 1 NC_008229.1 based on nucleotide blast, part of coding sequence ISHp608 orfB,ISHp608-like IS element; hypothetical protein; ISHa1152 transposase B fragment 3 663608 ISHa1152 tnpB fragment 3 4176121 ISHa1152 tnpB fragment 3 Helicobacter acinonychis str. Sheeba ISHa1152 transposase B fragment 3 YP_664553.1 663510 R 382638 CDS YP_664554.1 109947326 4177688 complement(663630..663755) 1 NC_008229.1 ISHp608-like IS element; hypothetical protein; ISHa1152 transposase B fragment 2 663755 ISHa1152 tnpB fragment 2 4177688 ISHa1152 tnpB fragment 2 Helicobacter acinonychis str. Sheeba ISHa1152 transposase B fragment 2 YP_664554.1 663630 R 382638 CDS YP_664555.1 109947327 4177686 complement(663712..663825) 1 NC_008229.1 ISHp608-like IS element; hypothetical protein; ISHa1152 transposase B fragment 1 663825 ISHa1152 tnpB fragment 1 4177686 ISHa1152 tnpB fragment 1 Helicobacter acinonychis str. Sheeba ISHa1152 transposase B fragment 1 YP_664555.1 663712 R 382638 CDS YP_664556.1 109947328 4177684 complement(663794..664198) 1 NC_008229.1 ISHp608-like IS element; hypothetical protein; ISHa1152 transposase A 664198 ISHa1152 tnpA 4177684 ISHa1152 tnpA Helicobacter acinonychis str. Sheeba ISHa1152 transposase A YP_664556.1 663794 R 382638 CDS YP_664557.1 109947329 4176756 complement(664803..665966) 1 NC_008229.1 hypothetical protein; High confidence in function and specificity; MccC-like protein 665966 mccC 4176756 mccC Helicobacter acinonychis str. Sheeba MccC-like protein YP_664557.1 664803 R 382638 CDS YP_664558.1 109947330 4176755 complement(665982..666485) 1 NC_008229.1 MccB-like protein fragment 666485 mccB fragment 4176755 mccB fragment Helicobacter acinonychis str. Sheeba MccB-like protein fragment YP_664558.1 665982 R 382638 CDS YP_664559.1 109947331 4176417 complement(666769..667446) 1 NC_008229.1 (P77756) Hypothetical protein; High confidence in function and specificity; hypothetical protein 667446 4176417 Hac_0767 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664559.1 666769 R 382638 CDS YP_664560.1 109947332 4176734 667507..668664 1 NC_008229.1 (Q9UTQ0) Probable tRNA nucleotidyltransferase (EC 2.7.7.19, EC 2.7.7.25) (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme)papS,pcnB; High confidence in function and specificity; poly(A) polymerase 668664 papS 4176734 papS Helicobacter acinonychis str. Sheeba poly(A) polymerase YP_664560.1 667507 D 382638 CDS YP_664561.1 109947333 4176418 668738..669724 1 NC_008229.1 High confidence in function and specificity; transcriptional regulator 669724 4176418 Hac_0770 Helicobacter acinonychis str. Sheeba transcriptional regulator YP_664561.1 668738 D 382638 CDS YP_664562.1 109947334 4176419 669721..670653 1 NC_008229.1 outer membrane protein 670653 4176419 Hac_0771 Helicobacter acinonychis str. Sheeba outer membrane protein YP_664562.1 669721 D 382638 CDS YP_664563.1 109947335 4176420 complement(670650..671282) 1 NC_008229.1 Specificity unclear; hypothetical protein 671282 4176420 Hac_0772 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664563.1 670650 R 382638 CDS YP_664564.1 109947336 4176421 671680..672102 1 NC_008229.1 hypothetical protein 672102 4176421 Hac_0773 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664564.1 671680 D 382638 CDS YP_664565.1 109947337 4176422 672132..672602 1 NC_008229.1 hypothetical protein 672602 4176422 Hac_0774 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664565.1 672132 D 382638 CDS YP_664566.1 109947338 4176423 672980..673195 1 NC_008229.1 hypothetical protein 673195 4176423 Hac_0776 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664566.1 672980 D 382638 CDS YP_664567.1 109947339 4177690 complement(673769..674710) 1 NC_008229.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 674710 accA 4177690 accA Helicobacter acinonychis str. Sheeba acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_664567.1 673769 R 382638 CDS YP_664568.1 109947340 4177408 complement(674734..675972) 1 NC_008229.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 675972 fabF 4177408 fabF Helicobacter acinonychis str. Sheeba 3-oxoacyl-(acyl carrier protein) synthase II YP_664568.1 674734 R 382638 CDS YP_664569.1 109947341 4177697 complement(676076..676312) 1 NC_008229.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 676312 acpP 4177697 acpP Helicobacter acinonychis str. Sheeba acyl carrier protein YP_664569.1 676076 R 382638 CDS YP_664570.1 109947342 4177409 complement(676530..677273) 1 NC_008229.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 677273 fabG 4177409 fabG Helicobacter acinonychis str. Sheeba 3-ketoacyl-ACP reductase YP_664570.1 676530 R 382638 CDS YP_664571.1 109947343 4176867 complement(677307..677519) 1 NC_008229.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 677519 rpsU 4176867 rpsU Helicobacter acinonychis str. Sheeba 30S ribosomal protein S21 YP_664571.1 677307 R 382638 CDS YP_664572.1 109947344 4176424 complement(677621..678868) 1 NC_008229.1 hypothetical protein 678868 4176424 Hac_0783 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664572.1 677621 R 382638 CDS YP_664573.1 109947345 4176425 679065..679283 1 NC_008229.1 hypothetical protein 679283 4176425 Hac_0784 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664573.1 679065 D 382638 CDS YP_664574.1 109947346 4176426 complement(679317..679964) 1 NC_008229.1 similar to HP0565; High confidence in function and specificity; hypothetical protein 679964 4176426 Hac_0785 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664574.1 679317 R 382638 CDS YP_664575.1 109947347 4176405 complement(680115..680909) 1 NC_008229.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 680909 dapF 4176405 dapF Helicobacter acinonychis str. Sheeba diaminopimelate epimerase YP_664575.1 680115 R 382638 CDS YP_664576.1 109947348 4176927 681025..682071 1 NC_008229.1 inner membrane protein; High confidence in function and specificity; hypothetical protein 682071 amaA 4176927 amaA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664576.1 681025 D 382638 CDS YP_664577.1 109947349 4177247 complement(682144..682953) 1 NC_008229.1 (P75939) Flagellar basal-body rod protein flgG (Distal rod protein); Function unclear; flagellar basal-body rod protein FlgG 682953 flgG 4177247 flgG Helicobacter acinonychis str. Sheeba flagellar basal-body rod protein FlgG YP_664577.1 682144 R 382638 CDS YP_664578.1 109947350 4176137 complement(683007..684275) 1 NC_008229.1 (P17448) Alpha-ketoglutarate permease; High confidence in function and specificity; alpha-ketoglutarate permease 684275 kgtP 4176137 kgtP Helicobacter acinonychis str. Sheeba alpha-ketoglutarate permease YP_664578.1 683007 R 382638 CDS YP_664579.1 109947351 4176900 complement(684478..686220) 1 NC_008229.1 (P44764) 23-cyclic-nucleotide 2-phosphodiesterase precursor (EC 3.1.4.16); High confidence in function and specificity; 2,3-cyclic-nucleotide 2'phosphodiesterase 686220 cpdB 4176900 cpdB Helicobacter acinonychis str. Sheeba 2,3-cyclic-nucleotide 2'phosphodiesterase YP_664579.1 684478 R 382638 CDS YP_664580.1 109947352 4177004 complement(686458..689001) 1 NC_008229.1 ftsK; cell division protein; High confidence in function and specificity; septum formation protein 689001 ftsK 4177004 ftsK Helicobacter acinonychis str. Sheeba septum formation protein YP_664580.1 686458 R 382638 CDS YP_664581.1 109947353 4176427 complement(688998..691334) 1 NC_008229.1 similar to HP1089; Function unclear; hypothetical protein 691334 4176427 Hac_0793 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664581.1 688998 R 382638 CDS YP_664582.1 109947354 4177481 complement(691331..693256) 1 NC_008229.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 693256 tktA 4177481 tktA Helicobacter acinonychis str. Sheeba transketolase YP_664582.1 691331 R 382638 CDS YP_664583.1 109947355 4177087 complement(693303..694142) 1 NC_008229.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 694142 ribC 4177087 ribC Helicobacter acinonychis str. Sheeba bifunctional riboflavin kinase/FMN adenylyltransferase YP_664583.1 693303 R 382638 CDS YP_664584.1 109947356 4177483 complement(694111..694818) 1 NC_008229.1 High confidence in function and specificity; hemolysin 694818 tly 4177483 tly Helicobacter acinonychis str. Sheeba hemolysin YP_664584.1 694111 R 382638 CDS YP_664585.1 109947357 4176428 complement(694818..695333) 1 NC_008229.1 hypothetical protein 695333 4176428 Hac_0797 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664585.1 694818 R 382638 CDS YP_664586.1 109947358 4177749 695400..696326 1 NC_008229.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 696326 pyrB 4177749 pyrB Helicobacter acinonychis str. Sheeba aspartate carbamoyltransferase catalytic subunit YP_664586.1 695400 D 382638 CDS YP_664587.1 109947359 4177434 696836..697630 1 NC_008229.1 hypothetical protein 697630 hofB fragment 1 4177434 hofB fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664587.1 696836 D 382638 CDS YP_664588.1 109947360 4177435 697674..698276 1 NC_008229.1 hypothetical protein 698276 hofB fragment 2 4177435 hofB fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664588.1 697674 D 382638 CDS YP_664589.1 109947361 4176730 698367..700022 1 NC_008229.1 Lipid A export ATP-binding/permease msbA; High confidence in function and specificity; multidrug resistance protein 700022 msbA 4176730 msbA Helicobacter acinonychis str. Sheeba multidrug resistance protein YP_664589.1 698367 D 382638 CDS YP_664590.1 109947362 4176429 700016..700633 1 NC_008229.1 hypothetical protein 700633 4176429 Hac_0805 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664590.1 700016 D 382638 CDS YP_664591.1 109947363 4176430 700637..701218 1 NC_008229.1 Function unclear; hypothetical protein 701218 4176430 Hac_0806 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664591.1 700637 D 382638 CDS YP_664592.1 109947364 4176431 complement(701203..702339) 1 NC_008229.1 Calcium-gated potassium channel mthK; Specificity unclear; potassium channel protein 702339 4176431 Hac_0807 Helicobacter acinonychis str. Sheeba potassium channel protein YP_664592.1 701203 R 382638 CDS YP_664593.1 109947365 4176857 complement(702502..702690) 1 NC_008229.1 required for 70S ribosome assembly; 50S ribosomal protein L28 702690 rpmB 4176857 rpmB Helicobacter acinonychis str. Sheeba 50S ribosomal protein L28 YP_664593.1 702502 R 382638 CDS YP_664594.1 109947366 4176881 complement(702775..703608) 1 NC_008229.1 High confidence in function and specificity; neuraminyllactose-binding hemagglutinin 703608 hpaA 4176881 hpaA Helicobacter acinonychis str. Sheeba neuraminyllactose-binding hemagglutinin YP_664594.1 702775 R 382638 CDS YP_664595.1 109947367 4176725 703740..704801 1 NC_008229.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 704801 mraY 4176725 mraY Helicobacter acinonychis str. Sheeba phospho-N-acetylmuramoyl-pentapeptide- transferase YP_664595.1 703740 D 382638 CDS YP_664596.1 109947368 4177653 704802..706070 1 NC_008229.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 706070 murD 4177653 murD Helicobacter acinonychis str. Sheeba UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_664596.1 704802 D 382638 CDS YP_664597.1 109947369 4177199 complement(706171..706335) 1 NC_008229.1 hypothetical protein 706335 4177199 Hac_0814 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664597.1 706171 R 382638 CDS YP_664598.1 109947370 4177200 complement(706325..706585) 1 NC_008229.1 hypothetical protein; hypothetical protein; hypothetical protein 706585 4177200 Hac_0815 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664598.1 706325 R 382638 CDS YP_664599.1 109947371 4177201 complement(706575..706976) 1 NC_008229.1 hypothetical protein; hypothetical protein; hypothetical protein 706976 4177201 Hac_0816 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664599.1 706575 R 382638 CDS YP_664600.1 109947372 4177202 707182..708510 1 NC_008229.1 sodium- and chloride-dependent transporter; Specificity unclear; transmembrane transport protein 708510 4177202 Hac_0817 Helicobacter acinonychis str. Sheeba transmembrane transport protein YP_664600.1 707182 D 382638 CDS YP_664601.1 109947373 4176354 708520..709383 1 NC_008229.1 sodium-dependent transporter; Specificity unclear; sodium-and chloride-dependent transporter fragment 1 709383 fragment 1 4176354 fragment 1 Helicobacter acinonychis str. Sheeba sodium-and chloride-dependent transporter fragment 1 YP_664601.1 708520 D 382638 CDS YP_664602.1 109947374 4177235 709395..709847 1 NC_008229.1 sodium- and chloride-dependent transporter; Specificity unclear; sodium-and chloride-dependent transporter fragment 2 709847 fragment 2 4177235 fragment 2 Helicobacter acinonychis str. Sheeba sodium-and chloride-dependent transporter fragment 2 YP_664602.1 709395 D 382638 CDS YP_664603.1 109947375 4176782 709862..710929 1 NC_008229.1 High confidence in function and specificity; phospholipase A 710929 pldA 4176782 pldA Helicobacter acinonychis str. Sheeba phospholipase A YP_664603.1 709862 D 382638 CDS YP_664604.1 109947376 4177136 710984..712108 1 NC_008229.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 712108 dnaN 4177136 dnaN Helicobacter acinonychis str. Sheeba DNA polymerase III subunit beta YP_664604.1 710984 D 382638 CDS YP_664605.1 109947377 4177278 712120..714441 1 NC_008229.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 714441 gyrB 4177278 gyrB Helicobacter acinonychis str. Sheeba DNA gyrase subunit B YP_664605.1 712120 D 382638 CDS YP_664606.1 109947378 4177203 714487..715479 1 NC_008229.1 hypothetical protein 715479 4177203 Hac_0823 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664606.1 714487 D 382638 CDS YP_664607.1 109947379 4176355 715499..715633 1 NC_008229.1 hypothetical protein 715633 fragment 1 4176355 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664607.1 715499 D 382638 CDS YP_664608.1 109947380 4177236 716000..716230 1 NC_008229.1 hypothetical protein 716230 fragment 2 4177236 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664608.1 716000 D 382638 CDS YP_664609.1 109947381 4176439 complement(716271..717008) 1 NC_008229.1 outer membrane protein 8 717008 omp8 4176439 omp8 Helicobacter acinonychis str. Sheeba outer membrane protein 8 YP_664609.1 716271 R 382638 CDS YP_664610.1 109947382 4177204 717494..717820 1 NC_008229.1 hypothetical protein 717820 4177204 Hac_0827 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664610.1 717494 D 382638 CDS YP_664611.1 109947383 4177205 717799..718401 1 NC_008229.1 methylase yhhF (EC 2.1.1.-); Specificity unclear; methylase 718401 4177205 Hac_0828 Helicobacter acinonychis str. Sheeba methylase YP_664611.1 717799 D 382638 CDS YP_664612.1 109947384 4177500 718410..718961 1 NC_008229.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 718961 fliL 4177500 fliL Helicobacter acinonychis str. Sheeba flagellar basal body-associated protein FliL YP_664612.1 718410 D 382638 CDS YP_664613.1 109947385 4177206 718968..719315 1 NC_008229.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 719315 acpS 4177206 acpS Helicobacter acinonychis str. Sheeba 4'-phosphopantetheinyl transferase YP_664613.1 718968 D 382638 CDS YP_664614.1 109947386 4177615 complement(719342..721306) 1 NC_008229.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 721306 ligA 4177615 ligA Helicobacter acinonychis str. Sheeba NAD-dependent DNA ligase LigA YP_664614.1 719342 R 382638 CDS YP_664615.1 109947387 4176601 721381..722322 1 NC_008229.1 Chemotaxis protein cheV; High confidence in function and specificity; chemotaxis protein 722322 cheV 4176601 cheV Helicobacter acinonychis str. Sheeba chemotaxis protein YP_664615.1 721381 D 382638 CDS YP_664616.1 109947388 4176943 722349..724103 1 NC_008229.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 724103 aspS 4176943 aspS Helicobacter acinonychis str. Sheeba aspartyl-tRNA synthetase YP_664616.1 722349 D 382638 CDS YP_664617.1 109947389 4177701 724100..724675 1 NC_008229.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 724675 adk 4177701 adk Helicobacter acinonychis str. Sheeba adenylate kinase YP_664617.1 724100 D 382638 CDS YP_664618.1 109947390 4177207 724676..725725 1 NC_008229.1 glycosyltransferase involved in LPS biosynthesis; High confidence in function and specificity; lipopolysaccharide biosynthesis protein 725725 4177207 Hac_0835 Helicobacter acinonychis str. Sheeba lipopolysaccharide biosynthesis protein YP_664618.1 724676 D 382638 CDS YP_664619.1 109947391 4176552 725780..726301 1 NC_008229.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 726301 ppa 4176552 ppa Helicobacter acinonychis str. Sheeba inorganic pyrophosphatase YP_664619.1 725780 D 382638 CDS YP_664620.1 109947392 4177208 726399..726980 1 NC_008229.1 hypothetical protein 726980 4177208 Hac_0837 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664620.1 726399 D 382638 CDS YP_664621.1 109947393 4177209 727784..728866 1 NC_008229.1 Specificity unclear; hypothetical protein 728866 4177209 Hac_0839 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664621.1 727784 D 382638 CDS YP_664622.1 109947394 4177210 728888..731632 1 NC_008229.1 High confidence in function and specificity; protective surface antigen 731632 4177210 Hac_0840 Helicobacter acinonychis str. Sheeba protective surface antigen YP_664622.1 728888 D 382638 CDS YP_664623.1 109947395 4177211 731634..732695 1 NC_008229.1 Specificity unclear; hypothetical protein 732695 4177211 Hac_0841 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664623.1 731634 D 382638 CDS YP_664624.1 109947396 4177716 732733..733992 1 NC_008229.1 High confidence in function and specificity; processing protease 733992 ymxG 4177716 ymxG Helicobacter acinonychis str. Sheeba processing protease YP_664624.1 732733 D 382638 CDS YP_664625.1 109947397 4177757 733992..735416 1 NC_008229.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 735416 gatB 4177757 gatB Helicobacter acinonychis str. Sheeba aspartyl/glutamyl-tRNA amidotransferase subunit B YP_664625.1 733992 D 382638 CDS YP_664626.1 109947398 4177212 735416..736630 1 NC_008229.1 Function unclear; hypothetical protein 736630 4177212 Hac_0844 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664626.1 735416 D 382638 CDS YP_664627.1 109947399 4177213 736641..737648 1 NC_008229.1 hypothetical protein 737648 4177213 Hac_0845 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664627.1 736641 D 382638 CDS YP_664628.1 109947400 4177095 737649..738080 1 NC_008229.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 738080 rnhA 4177095 rnhA Helicobacter acinonychis str. Sheeba ribonuclease H YP_664628.1 737649 D 382638 CDS YP_664629.1 109947401 4177094 738091..738795 1 NC_008229.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 738795 rnc 4177094 rnc Helicobacter acinonychis str. Sheeba ribonuclease III YP_664629.1 738091 D 382638 CDS YP_664630.1 109947402 4176935 738792..739889 1 NC_008229.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 739889 aroC 4176935 aroC Helicobacter acinonychis str. Sheeba chorismate synthase YP_664630.1 738792 D 382638 CDS YP_664631.1 109947403 4177214 739926..740441 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 740441 4177214 Hac_0849 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664631.1 739926 D 382638 CDS YP_664632.1 109947404 4177429 740441..741814 1 NC_008229.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 741814 hemN 4177429 hemN Helicobacter acinonychis str. Sheeba coproporphyrinogen III oxidase YP_664632.1 740441 D 382638 CDS YP_664633.1 109947405 4177774 741811..743106 1 NC_008229.1 High confidence in function and specificity; glycerol-3-phosphatedehydrogenase 743106 glpC 4177774 glpC Helicobacter acinonychis str. Sheeba glycerol-3-phosphatedehydrogenase YP_664633.1 741811 D 382638 CDS YP_664634.1 109947406 4177215 743107..744075 1 NC_008229.1 NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog); High confidence in function and specificity; hypothetical protein 744075 4177215 Hac_0852 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664634.1 743107 D 382638 CDS YP_664635.1 109947407 4177216 744082..744849 1 NC_008229.1 hypothetical protein 744849 4177216 Hac_0853 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664635.1 744082 D 382638 CDS YP_664636.1 109947408 4176440 745060..745872 1 NC_008229.1 outer membrane protein 9 745872 omp9 4176440 omp9 Helicobacter acinonychis str. Sheeba outer membrane protein 9 YP_664636.1 745060 D 382638 CDS YP_664637.1 109947409 4176942 746025..747197 1 NC_008229.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 747197 aspB 4176942 aspB Helicobacter acinonychis str. Sheeba aspartate aminotransferase YP_664637.1 746025 D 382638 CDS YP_664638.1 109947410 4177217 747335..747505 1 NC_008229.1 hypothetical protein 747505 4177217 Hac_0857 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664638.1 747335 D 382638 CDS YP_664639.1 109947411 4176640 747557..748642 1 NC_008229.1 High confidence in function and specificity; integrase-recombinase protein 748642 xerD 4176640 xerD Helicobacter acinonychis str. Sheeba integrase-recombinase protein YP_664639.1 747557 D 382638 CDS YP_664640.1 109947412 4176406 complement(748687..749202) 1 NC_008229.1 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase); High confidence in function and specificity; methylated-DNA--protein-cysteine methyltransferase 749202 dat1 4176406 dat1 Helicobacter acinonychis str. Sheeba methylated-DNA--protein-cysteine methyltransferase YP_664640.1 748687 R 382638 CDS YP_664641.1 109947413 4177218 complement(749223..749990) 1 NC_008229.1 conserved hypothetical integral membrane protein, permease; Function unclear; hypothetical protein 749990 4177218 Hac_0860 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664641.1 749223 R 382638 CDS YP_664642.1 109947414 4176638 complement(750047..750991) 1 NC_008229.1 oxido-reductase; High confidence in function and specificity; lipopolysaccharide biosynthesis protein wbpB 750991 wbpB 4176638 wbpB Helicobacter acinonychis str. Sheeba lipopolysaccharide biosynthesis protein wbpB YP_664642.1 750047 R 382638 CDS YP_664643.1 109947415 4177447 complement(751053..753419) 1 NC_008229.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 753419 nrdA 4177447 nrdA Helicobacter acinonychis str. Sheeba ribonucleotide-diphosphate reductase subunit alpha YP_664643.1 751053 R 382638 CDS YP_664644.1 109947416 4177768 complement(753517..754818) 1 NC_008229.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 754818 glmU 4177768 glmU Helicobacter acinonychis str. Sheeba bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_664644.1 753517 R 382638 CDS YP_664645.1 109947417 4176356 754914..755660 1 NC_008229.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 755660 fliP 4176356 fliP Helicobacter acinonychis str. Sheeba flagellar biosynthesis protein FliP YP_664645.1 754914 D 382638 CDS YP_664646.1 109947418 4176811 complement(755701..758004) 1 NC_008229.1 Iron(III) dicitrate transport protein fecA; High confidence in function and specificity; iron(III) dicitrate transport protein 758004 fecA 4176811 fecA Helicobacter acinonychis str. Sheeba iron(III) dicitrate transport protein YP_664646.1 755701 R 382638 CDS YP_664647.1 109947419 4176817 complement(758153..760081) 1 NC_008229.1 Ferrous iron transport protein B homolog; High confidence in function and specificity; ferrous iron transport protein B 760081 feoB 4176817 feoB Helicobacter acinonychis str. Sheeba ferrous iron transport protein B YP_664647.1 758153 R 382638 CDS YP_664648.1 109947420 4176357 760216..761028 1 NC_008229.1 Specificity unclear; hypothetical protein 761028 4176357 Hac_0867 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664648.1 760216 D 382638 CDS YP_664649.1 109947421 4177043 761116..761244 1 NC_008229.1 hypothetical protein 761244 fragment 1 4177043 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664649.1 761116 D 382638 CDS YP_664650.1 109947422 4177237 761287..761430 1 NC_008229.1 hypothetical protein 761430 fragment 2 4177237 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664650.1 761287 D 382638 CDS YP_664651.1 109947423 4176358 complement(761563..762384) 1 NC_008229.1 Region start changed from 762342 to 762384 (42 bases); hypothetical protein 762384 4176358 Hac_0870 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664651.1 761563 R 382638 CDS YP_664652.1 109947424 4176359 complement(762381..763346) 1 NC_008229.1 hypothetical protein 763346 4176359 Hac_0871 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664652.1 762381 R 382638 CDS YP_664653.1 109947425 4176360 complement(763358..764041) 1 NC_008229.1 Function unclear; rRNA methylase 764041 4176360 Hac_0872 Helicobacter acinonychis str. Sheeba rRNA methylase YP_664653.1 763358 R 382638 CDS YP_664654.1 109947426 4176361 complement(764054..764917) 1 NC_008229.1 High confidence in function and specificity; methylase 764917 4176361 Hac_0873 Helicobacter acinonychis str. Sheeba methylase YP_664654.1 764054 R 382638 CDS YP_664655.1 109947427 4176859 complement(764942..765145) 1 NC_008229.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 765145 rpmE 4176859 rpmE Helicobacter acinonychis str. Sheeba 50S ribosomal protein L31 YP_664655.1 764942 R 382638 CDS YP_664656.1 109947428 4177084 765407..766723 1 NC_008229.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 766723 rho 4177084 rho Helicobacter acinonychis str. Sheeba transcription termination factor Rho YP_664656.1 765407 D 382638 CDS YP_664657.1 109947429 4177657 766758..767525 1 NC_008229.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 767525 murI 4177657 murI Helicobacter acinonychis str. Sheeba glutamate racemase YP_664657.1 766758 D 382638 CDS YP_664658.1 109947430 4176362 767537..768370 1 NC_008229.1 Function unclear; hypothetical protein 768370 4176362 Hac_0877 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664658.1 767537 D 382638 CDS YP_664659.1 109947431 4177769 complement(768545..769990) 1 NC_008229.1 Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia ligase); High confidence in function and specificity; hypothetical protein 769990 glnA 4177769 glnA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664659.1 768545 R 382638 CDS YP_664660.1 109947432 4176363 770210..771115 1 NC_008229.1 Region start changed from 770282 to 770210 (72 bases); hypothetical protein 771115 4176363 Hac_0879 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664660.1 770210 D 382638 CDS YP_664661.1 109947433 4177238 771156..771365 1 NC_008229.1 Function unclear; hypothetical protein 771365 fragment 2 4177238 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664661.1 771156 D 382638 CDS YP_664662.1 109947434 4177284 771590..772270 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 772270 fragment 3 4177284 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664662.1 771590 D 382638 CDS YP_664663.1 109947435 4176840 772334..772783 1 NC_008229.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 772783 rplI 4176840 rplI Helicobacter acinonychis str. Sheeba 50S ribosomal protein L9 YP_664663.1 772334 D 382638 CDS YP_664664.1 109947436 4177541 772787..773329 1 NC_008229.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 773329 hslV 4177541 hslV Helicobacter acinonychis str. Sheeba ATP-dependent protease peptidase subunit YP_664664.1 772787 D 382638 CDS YP_664665.1 109947437 4177540 773329..774660 1 NC_008229.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 774660 hslU 4177540 hslU Helicobacter acinonychis str. Sheeba ATP-dependent protease ATP-binding subunit HslU YP_664665.1 773329 D 382638 CDS YP_664666.1 109947438 4177399 774660..775565 1 NC_008229.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 775565 era 4177399 era Helicobacter acinonychis str. Sheeba GTP-binding protein Era YP_664666.1 774660 D 382638 CDS YP_664667.1 109947439 4176364 775562..776554 1 NC_008229.1 Function unclear; hypothetical protein 776554 4176364 Hac_0886 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664667.1 775562 D 382638 CDS YP_664668.1 109947440 4176365 776837..777124 1 NC_008229.1 hypothetical protein 777124 4176365 Hac_0887 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664668.1 776837 D 382638 CDS YP_664669.1 109947441 4176366 777826..778002 1 NC_008229.1 hypothetical protein 778002 4176366 Hac_0889 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664669.1 777826 D 382638 CDS YP_664670.1 109947442 4176367 778039..778335 1 NC_008229.1 hypothetical protein 778335 4176367 Hac_0890 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664670.1 778039 D 382638 CDS YP_664671.1 109947443 4176368 778528..778827 1 NC_008229.1 hypothetical protein 778827 4176368 Hac_0891 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664671.1 778528 D 382638 CDS YP_664672.1 109947444 4176369 complement(780404..780529) 1 NC_008229.1 hypothetical protein 780529 4176369 Hac_0894 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664672.1 780404 R 382638 CDS YP_664673.1 109947445 4176370 780763..780978 1 NC_008229.1 hypothetical protein 780978 4176370 Hac_0895 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664673.1 780763 D 382638 CDS YP_664674.1 109947446 4176402 complement(781200..781964) 1 NC_008229.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 781964 dapB 4176402 dapB Helicobacter acinonychis str. Sheeba dihydrodipicolinate reductase YP_664674.1 781200 R 382638 CDS YP_664675.1 109947447 4177765 complement(781985..783364) 1 NC_008229.1 Glycolate oxidase subunit glcD; High confidence in function and specificity; glycolate oxidase subunit 783364 glcD 4177765 glcD Helicobacter acinonychis str. Sheeba glycolate oxidase subunit YP_664675.1 781985 R 382638 CDS YP_664676.1 109947448 4176371 complement(783368..784615) 1 NC_008229.1 hypothetical protein 784615 4176371 Hac_0899 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664676.1 783368 R 382638 CDS YP_664677.1 109947449 4176372 complement(784626..785261) 1 NC_008229.1 uridine diphosphate glucose pyrophosphatase (EC 3.6.1.45) (UGPPase) (Nucleoside diphosphate linked moiety X motif 14); High confidence in function and specificity; hypothetical protein 785261 4176372 Hac_0900 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664677.1 784626 R 382638 CDS YP_664678.1 109947450 4176373 complement(785261..786484) 1 NC_008229.1 Specificity unclear; hypothetical protein 786484 4176373 Hac_0901 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664678.1 785261 R 382638 CDS YP_664679.1 109947451 4176374 786646..787923 1 NC_008229.1 periplasmic protein; hypothetical protein; hypothetical protein 787923 4176374 Hac_0902 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664679.1 786646 D 382638 CDS YP_664680.1 109947452 4176869 788005..789372 1 NC_008229.1 hof family outer membrane protein 789372 hofE 4176869 hofE Helicobacter acinonychis str. Sheeba hof family outer membrane protein YP_664680.1 788005 D 382638 CDS YP_664681.1 109947453 4176277 complement(789379..789906) 1 NC_008229.1 hypothetical protein 789906 4176277 Hac_0904 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664681.1 789379 R 382638 CDS YP_664682.1 109947454 4176278 complement(790376..790930) 1 NC_008229.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 790930 lolA 4176278 lolA Helicobacter acinonychis str. Sheeba outer-membrane lipoprotein carrier protein YP_664682.1 790376 R 382638 CDS YP_664683.2 162139480 4177167 791065..793662 1 NC_008229.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 793662 secA 4177167 secA Helicobacter acinonychis str. Sheeba preprotein translocase subunit SecA YP_664683.2 791065 D 382638 CDS YP_664684.1 109947456 4176279 793652..794884 1 NC_008229.1 High confidence in function and specificity; integral membrane protein 794884 4176279 Hac_0907 Helicobacter acinonychis str. Sheeba integral membrane protein YP_664684.1 793652 D 382638 CDS YP_664685.1 109947457 4176870 795354..796853 1 NC_008229.1 hof family outer membrane protein 796853 hofF 4176870 hofF Helicobacter acinonychis str. Sheeba hof family outer membrane protein YP_664685.1 795354 D 382638 CDS YP_664686.1 109947458 4177285 complement(797259..797747) 1 NC_008229.1 type I restriction enzyme specificity protein; Function unclear; hypothetical protein 797747 fragment 3 4177285 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664686.1 797259 R 382638 CDS YP_664687.1 109947459 4177024 complement(797759..797854) 1 NC_008229.1 hypothetical protein 797854 fragment 2 4177024 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664687.1 797759 R 382638 CDS YP_664688.1 109947460 4177044 complement(797806..797898) 1 NC_008229.1 hypothetical protein 797898 fragment 1 4177044 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664688.1 797806 R 382638 CDS YP_664689.1 109947461 4177717 complement(797947..800007) 1 NC_008229.1 Cadmium zinc and cobalt transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); High confidence in function and specificity; heavy metal-transporting ATPase 800007 yvgW 4177717 yvgW Helicobacter acinonychis str. Sheeba heavy metal-transporting ATPase YP_664689.1 797947 R 382638 CDS YP_664690.1 109947462 4176280 complement(800032..801552) 1 NC_008229.1 Specificity unclear; sigma-54 interacting protein 801552 4176280 Hac_0914 Helicobacter acinonychis str. Sheeba sigma-54 interacting protein YP_664690.1 800032 R 382638 CDS YP_664691.1 109947463 4177124 complement(801555..802082) 1 NC_008229.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 802082 def 4177124 def Helicobacter acinonychis str. Sheeba peptide deformylase YP_664691.1 801555 R 382638 CDS YP_664692.1 109947464 4176888 complement(802087..802674) 1 NC_008229.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 802674 clpP 4176888 clpP Helicobacter acinonychis str. Sheeba ATP-dependent Clp protease proteolytic subunit YP_664692.1 802087 R 382638 CDS YP_664693.1 109947465 4177479 complement(802694..804049) 1 NC_008229.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 804049 tig 4177479 tig Helicobacter acinonychis str. Sheeba trigger factor YP_664693.1 802694 R 382638 CDS YP_664694.1 109947466 4176470 complement(804163..804996) 1 NC_008229.1 outer membrane protein 10 804996 omp10 4176470 omp10 Helicobacter acinonychis str. Sheeba outer membrane protein 10 YP_664694.1 804163 R 382638 CDS YP_664695.1 109947467 4176882 complement(805029..805811) 1 NC_008229.1 High confidence in function and specificity; neuraminyllactose-binding hemagglutinin 805811 hpaA 4176882 hpaA Helicobacter acinonychis str. Sheeba neuraminyllactose-binding hemagglutinin YP_664695.1 805029 R 382638 CDS YP_664696.1 109947468 4177085 complement(805967..806545) 1 NC_008229.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 806545 ribA 4177085 ribA Helicobacter acinonychis str. Sheeba GTP cyclohydrolase II YP_664696.1 805967 R 382638 CDS YP_664697.1 109947469 4176281 complement(807137..807565) 1 NC_008229.1 hypothetical protein 807565 4176281 Hac_0921 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664697.1 807137 R 382638 CDS YP_664698.1 109947470 4176282 complement(807567..808013) 1 NC_008229.1 hypothetical protein 808013 4176282 Hac_0922 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664698.1 807567 R 382638 CDS YP_664699.1 109947471 4176283 complement(808024..808839) 1 NC_008229.1 hypothetical protein 808839 4176283 Hac_0923 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664699.1 808024 R 382638 CDS YP_664700.1 109947472 4177086 complement(808924..809958) 1 NC_008229.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 809958 ribA 4177086 ribA Helicobacter acinonychis str. Sheeba bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_664700.1 808924 R 382638 CDS YP_664701.1 109947473 4176284 complement(810038..810883) 1 NC_008229.1 Function unclear; lipopolysaccharide biosynthesis protein 810883 4176284 Hac_0925 Helicobacter acinonychis str. Sheeba lipopolysaccharide biosynthesis protein YP_664701.1 810038 R 382638 CDS YP_664702.1 109947474 4176285 810963..811583 1 NC_008229.1 Function unclear; metalloprotease 811583 4176285 Hac_0926 Helicobacter acinonychis str. Sheeba metalloprotease YP_664702.1 810963 D 382638 CDS YP_664703.1 109947475 4176694 complement(811634..814459) 1 NC_008229.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 814459 uvrA 4176694 uvrA Helicobacter acinonychis str. Sheeba excinuclease ABC subunit A YP_664703.1 811634 R 382638 CDS YP_664704.1 109947476 4176471 814638..815459 1 NC_008229.1 outer membrane protein 11 815459 omp11 4176471 omp11 Helicobacter acinonychis str. Sheeba outer membrane protein 11 YP_664704.1 814638 D 382638 CDS YP_664705.1 109947477 4176724 815539..816465 1 NC_008229.1 High confidence in function and specificity; S-adenosyl-methyltransferase MraW 816465 mraW 4176724 mraW Helicobacter acinonychis str. Sheeba S-adenosyl-methyltransferase MraW YP_664705.1 815539 D 382638 CDS YP_664706.1 109947478 4176286 816486..816830 1 NC_008229.1 hypothetical protein 816830 4176286 Hac_0930 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664706.1 816486 D 382638 CDS YP_664707.1 109947479 4176287 816990..817892 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 817892 4176287 Hac_0932 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664707.1 816990 D 382638 CDS YP_664708.1 109947480 4176288 817964..819208 1 NC_008229.1 Function unclear; hypothetical protein 819208 4176288 Hac_0933 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664708.1 817964 D 382638 CDS YP_664709.1 109947481 4177045 819245..819343 1 NC_008229.1 hypothetical protein 819343 fragment 1 4177045 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664709.1 819245 D 382638 CDS YP_664710.1 109947482 4177025 819363..819764 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 819764 fragment 2 4177025 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664710.1 819363 D 382638 CDS YP_664711.1 109947483 4177286 819761..819856 1 NC_008229.1 hypothetical protein 819856 fragment 3 4177286 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664711.1 819761 D 382638 CDS YP_664712.1 109947484 4176865 complement(819945..821189) 1 NC_008229.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 821189 rpoN 4176865 rpoN Helicobacter acinonychis str. Sheeba RNA polymerase factor sigma-54 YP_664712.1 819945 R 382638 CDS YP_664713.1 109947485 4177713 complement(821192..821914) 1 NC_008229.1 High confidence in function and specificity; ABC transporter ATP-binding protein 821914 yhbG 4177713 yhbG Helicobacter acinonychis str. Sheeba ABC transporter ATP-binding protein YP_664713.1 821192 R 382638 CDS YP_664714.1 109947486 4176289 complement(821927..822328) 1 NC_008229.1 Function unclear; hypothetical protein 822328 4176289 Hac_0939 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664714.1 821927 R 382638 CDS YP_664715.1 109947487 4177139 complement(822325..824055) 1 NC_008229.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 824055 dnaX 4177139 dnaX Helicobacter acinonychis str. Sheeba DNA polymerase III subunits gamma and tau YP_664715.1 822325 R 382638 CDS YP_664716.1 109947488 4176476 complement(824254..824508) 1 NC_008229.1 hypothetical protein 824508 omp12 fragment 5 4176476 omp12 fragment 5 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664716.1 824254 R 382638 CDS YP_664717.1 109947489 4176475 complement(824505..824639) 1 NC_008229.1 hypothetical protein 824639 omp12 fragment 4 4176475 omp12 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664717.1 824505 R 382638 CDS YP_664718.1 109947490 4176474 complement(824724..824933) 1 NC_008229.1 hypothetical protein 824933 omp12 fragment 3 4176474 omp12 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664718.1 824724 R 382638 CDS YP_664719.1 109947491 4176473 complement(825081..825230) 1 NC_008229.1 hypothetical protein 825230 omp12 fragment 2 4176473 omp12 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664719.1 825081 R 382638 CDS YP_664720.1 109947492 4176472 complement(825227..825721) 1 NC_008229.1 hypothetical protein 825721 omp12 fragment 1 4176472 omp12 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664720.1 825227 R 382638 CDS YP_664721.1 109947493 4176409 complement(826296..827624) 1 NC_008229.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 827624 dcuA 4176409 dcuA Helicobacter acinonychis str. Sheeba anaerobic C4-dicarboxylate transporter YP_664721.1 826296 R 382638 CDS YP_664722.1 109947494 4176929 827703..828755 1 NC_008229.1 Probable L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase) (L-ASNase); High confidence in function and specificity; L-asparaginase II 828755 ansB 4176929 ansB Helicobacter acinonychis str. Sheeba L-asparaginase II YP_664722.1 827703 D 382638 CDS YP_664723.1 109947495 4176290 complement(828979..829479) 1 NC_008229.1 acetone carboxylase gamma subunit; Function unclear; hypothetical protein 829479 4176290 Hac_0949 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664723.1 828979 R 382638 CDS YP_664724.1 109947496 4177675 complement(829508..831805) 1 NC_008229.1 High confidence in function and specificity; N-methylhydantoinase B 831805 hyuB 4177675 hyuB Helicobacter acinonychis str. Sheeba N-methylhydantoinase B YP_664724.1 829508 R 382638 CDS YP_664725.1 109947497 4177674 complement(831823..833964) 1 NC_008229.1 Hydantoin utilization protein A (ORF2); High confidence in function and specificity; N-methylhydantoinase A 833964 hyuA 4177674 hyuA Helicobacter acinonychis str. Sheeba N-methylhydantoinase A YP_664725.1 831823 R 382638 CDS YP_664726.1 109947498 4176291 complement(834199..835197) 1 NC_008229.1 Function unclear; outer membrane protein 835197 4176291 Hac_0953 Helicobacter acinonychis str. Sheeba outer membrane protein YP_664726.1 834199 R 382638 CDS YP_664727.1 109947499 4176945 complement(835332..836696) 1 NC_008229.1 Short-chain fatty acids transporter; High confidence in function and specificity; short-chain fatty acids transporter 836696 atoE 4176945 atoE Helicobacter acinonychis str. Sheeba short-chain fatty acids transporter YP_664727.1 835332 R 382638 CDS YP_664728.1 109947500 4177164 complement(836719..837342) 1 NC_008229.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B); High confidence in function and specificity; 3-oxoacid CoA-transferase subunit B 837342 scoB 4177164 scoB Helicobacter acinonychis str. Sheeba 3-oxoacid CoA-transferase subunit B YP_664728.1 836719 R 382638 CDS YP_664729.1 109947501 4177163 complement(837339..838037) 1 NC_008229.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT A); High confidence in function and specificity; 3-oxoacid CoA-transferase subunit A 838037 scoA 4177163 scoA Helicobacter acinonychis str. Sheeba 3-oxoacid CoA-transferase subunit A YP_664729.1 837339 R 382638 CDS YP_664730.1 109947502 4176944 complement(838048..839223) 1 NC_008229.1 Acetyl-CoA acetyltransferase (EC 2.3.1.9) (Acetoacetyl-CoA thiolase); High confidence in function and specificity; hypothetical protein 839223 atoB 4176944 atoB Helicobacter acinonychis str. Sheeba hypothetical protein YP_664730.1 838048 R 382638 CDS YP_664731.1 109947503 4176292 839490..840518 1 NC_008229.1 hypothetical protein 840518 4176292 Hac_0959 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664731.1 839490 D 382638 CDS YP_664732.1 109947504 4177128 840511..840897 1 NC_008229.1 Diacylglycerol kinase (EC 2.7.1.107) (DAGK) (Diglyceride kinase) (DGK); High confidence in function and specificity; hypothetical protein 840897 dgkA 4177128 dgkA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664732.1 840511 D 382638 CDS YP_664733.1 109947505 4177277 840917..843412 1 NC_008229.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 843412 gyrA 4177277 gyrA Helicobacter acinonychis str. Sheeba DNA gyrase subunit A YP_664733.1 840917 D 382638 CDS YP_664734.1 109947506 4176293 843412..843885 1 NC_008229.1 hypothetical protein 843885 4176293 Hac_0962 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664734.1 843412 D 382638 CDS YP_664735.1 109947507 4176294 843882..845027 1 NC_008229.1 High confidence in function and specificity; response regulator 845027 4176294 Hac_0963 Helicobacter acinonychis str. Sheeba response regulator YP_664735.1 843882 D 382638 CDS YP_664736.1 109947508 4176295 845306..845665 1 NC_008229.1 hypothetical protein 845665 4176295 Hac_0965 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664736.1 845306 D 382638 CDS YP_664737.1 109947509 4176296 complement(846004..846537) 1 NC_008229.1 High confidence in function and specificity; methylase 846537 4176296 Hac_0966 Helicobacter acinonychis str. Sheeba methylase YP_664737.1 846004 R 382638 CDS YP_664738.1 109947510 4176139 complement(846546..848360) 1 NC_008229.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 848360 lepA 4176139 lepA Helicobacter acinonychis str. Sheeba GTP-binding protein LepA YP_664738.1 846546 R 382638 CDS YP_664739.1 109947511 4176388 complement(848357..850207) 1 NC_008229.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 850207 dxs 4176388 dxs Helicobacter acinonychis str. Sheeba 1-deoxy-D-xylulose-5-phosphate synthase YP_664739.1 848357 R 382638 CDS YP_664740.1 109947512 4177498 complement(850210..850962) 1 NC_008229.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 850962 fliH 4177498 fliH Helicobacter acinonychis str. Sheeba flagellar assembly protein H YP_664740.1 850210 R 382638 CDS YP_664741.1 109947513 4177497 complement(850973..852004) 1 NC_008229.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 852004 fliG 4177497 fliG Helicobacter acinonychis str. Sheeba flagellar motor switch protein G YP_664741.1 850973 R 382638 CDS YP_664742.1 109947514 4177496 complement(852044..853747) 1 NC_008229.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 853747 fliF 4177496 fliF Helicobacter acinonychis str. Sheeba flagellar MS-ring protein YP_664742.1 852044 R 382638 CDS YP_664743.1 109947515 4176908 complement(853796..854464) 1 NC_008229.1 Function unclear; hypothetical protein 854464 4176908 Hac_0972 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664743.1 853796 R 382638 CDS YP_664744.1 109947516 4177755 854746..856362 1 NC_008229.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 856362 pyrG 4177755 pyrG Helicobacter acinonychis str. Sheeba CTP synthetase YP_664744.1 854746 D 382638 CDS YP_664745.1 109947517 4177070 856371..857921 1 NC_008229.1 Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-); High confidence in function and specificity; ssDNA-binding protein 857921 recJ 4177070 recJ Helicobacter acinonychis str. Sheeba ssDNA-binding protein YP_664745.1 856371 D 382638 CDS YP_664746.1 109947518 4176909 857921..858802 1 NC_008229.1 Hypothetical pseudouridine synthase JHP0321 (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase); High confidence in function and specificity; ribosomal pseudouridine synthase 858802 4176909 Hac_0975 Helicobacter acinonychis str. Sheeba ribosomal pseudouridine synthase YP_664746.1 857921 D 382638 CDS YP_664747.1 109947519 4176910 complement(858811..860022) 1 NC_008229.1 Region start changed from 859755 to 860022 (267 bases); hypothetical protein 860022 4176910 Hac_0976 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664747.1 858811 R 382638 CDS YP_664748.1 109947520 4176911 complement(860019..860804) 1 NC_008229.1 hypothetical protein 860804 4176911 Hac_0977 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664748.1 860019 R 382638 CDS YP_664749.1 109947521 4177026 complement(860782..861024) 1 NC_008229.1 Function unclear; hypothetical protein 861024 fragment 2 4177026 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664749.1 860782 R 382638 CDS YP_664750.1 109947522 4177046 complement(861030..861194) 1 NC_008229.1 Function unclear; hypothetical protein 861194 fragment 1 4177046 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664750.1 861030 R 382638 CDS YP_664751.1 109947523 4176912 861503..861661 1 NC_008229.1 hypothetical protein 861661 4176912 Hac_0981 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664751.1 861503 D 382638 CDS YP_664752.1 109947524 4176913 complement(861877..862419) 1 NC_008229.1 hypothetical protein 862419 4176913 Hac_0982 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664752.1 861877 R 382638 CDS YP_664753.1 109947525 4176914 complement(862421..862759) 1 NC_008229.1 Function unclear; hypothetical protein 862759 4176914 Hac_0983 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664753.1 862421 R 382638 CDS YP_664754.1 109947526 4176915 complement(862876..863505) 1 NC_008229.1 beta-lactamase hcpC precursor (EC 3.5.2.6) (Cysteine-rich protein C); Specificity unclear; hypothetical protein 863505 4176915 Hac_0984 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664754.1 862876 R 382638 CDS YP_664755.1 109947527 4176916 complement(863758..864162) 1 NC_008229.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 864162 4176916 Hac_0986 Helicobacter acinonychis str. Sheeba Holliday junction resolvase-like protein YP_664755.1 863758 R 382638 CDS YP_664756.1 109947528 4176383 complement(864159..864959) 1 NC_008229.1 High confidence in function and specificity; DNA processing protein DprA 864959 dprA 4176383 dprA Helicobacter acinonychis str. Sheeba DNA processing protein DprA YP_664756.1 864159 R 382638 CDS YP_664757.1 109947529 4176769 complement(864966..865199) 1 NC_008229.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 865199 minE 4176769 minE Helicobacter acinonychis str. Sheeba cell division topological specificity factor MinE YP_664757.1 864966 R 382638 CDS YP_664758.1 109947530 4176768 complement(865196..866002) 1 NC_008229.1 Septum site-determining protein minD (Cell division inhibitor minD); High confidence in function and specificity; cell division inhibitor 866002 minD 4176768 minD Helicobacter acinonychis str. Sheeba cell division inhibitor YP_664758.1 865196 R 382638 CDS YP_664759.1 109947531 4177678 complement(866025..867017) 1 NC_008229.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 867017 ilvC 4177678 ilvC Helicobacter acinonychis str. Sheeba ketol-acid reductoisomerase YP_664759.1 866025 R 382638 CDS YP_664760.1 109947532 4177665 867273..868055 1 NC_008229.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 868055 nadE 4177665 nadE Helicobacter acinonychis str. Sheeba NAD synthetase YP_664760.1 867273 D 382638 CDS YP_664761.1 109947533 4177624 868052..868990 1 NC_008229.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 868990 lpxK 4177624 lpxK Helicobacter acinonychis str. Sheeba tetraacyldisaccharide 4'-kinase YP_664761.1 868052 D 382638 CDS YP_664762.1 109947534 4176828 complement(868923..869465) 1 NC_008229.1 Function unclear; flagellar protein G 869465 flaG 4176828 flaG Helicobacter acinonychis str. Sheeba flagellar protein G YP_664762.1 868923 R 382638 CDS YP_664763.1 109947535 4177441 complement(869462..870313) 1 NC_008229.1 neuA; CMP-N-acetylneuraminic acid synthetase [EC:2.7.7.43]; High confidence in function and specificity; CMP-N-acetylneuraminic acid synthetase fragment 2 870313 neuA fragment 2 4177441 neuA fragment 2 Helicobacter acinonychis str. Sheeba CMP-N-acetylneuraminic acid synthetase fragment 2 YP_664763.1 869462 R 382638 CDS YP_664764.1 109947536 4177440 complement(870319..871008) 1 NC_008229.1 Acylneuraminate cytidylyltransferase (EC 2.7.7.43) (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) (CMP-sialic acid synthetase); High confidence in function and specificity; CMP-N-acetylneuraminic acid synthetase fragment 1 871008 neuA fragment 1 4177440 neuA fragment 1 Helicobacter acinonychis str. Sheeba CMP-N-acetylneuraminic acid synthetase fragment 1 YP_664764.1 870319 R 382638 CDS YP_664765.1 109947537 4177248 complement(871032..871730) 1 NC_008229.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 871730 flgH 4177248 flgH Helicobacter acinonychis str. Sheeba flagellar basal body L-ring protein YP_664765.1 871032 R 382638 CDS YP_664766.1 109947538 4176477 871856..872596 1 NC_008229.1 outer membrane protein 13 872596 omp13 4176477 omp13 Helicobacter acinonychis str. Sheeba outer membrane protein 13 YP_664766.1 871856 D 382638 CDS YP_664767.1 109947539 4176917 complement(872603..873145) 1 NC_008229.1 membrane-associated cation-independent thermostable nuclease; preferentially cleaves ss-DNA; involved in DNA transformation; nuclease NucT 873145 4176917 Hac_0998 Helicobacter acinonychis str. Sheeba nuclease NucT YP_664767.1 872603 R 382638 CDS YP_664768.1 109947540 4176918 873254..874555 1 NC_008229.1 hypothetical protein 874555 4176918 Hac_0999 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664768.1 873254 D 382638 CDS YP_664769.1 109947541 4177268 874566..875168 1 NC_008229.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 875168 gmk 4177268 gmk Helicobacter acinonychis str. Sheeba guanylate kinase YP_664769.1 874566 D 382638 CDS YP_664770.1 109947542 4176919 875239..875478 1 NC_008229.1 Sec-independent protein translocase protein tatA/E homolog; High confidence in function and specificity; sec-independent protein translocase protein 875478 4176919 Hac_1001 Helicobacter acinonychis str. Sheeba sec-independent protein translocase protein YP_664770.1 875239 D 382638 CDS YP_664771.1 109947543 4176931 875481..877106 1 NC_008229.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 877106 argS 4176931 argS Helicobacter acinonychis str. Sheeba arginyl-tRNA synthetase YP_664771.1 875481 D 382638 CDS YP_664772.1 109947544 4176920 877313..878068 1 NC_008229.1 Specificity unclear; hypothetical protein 878068 4176920 Hac_1003 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664772.1 877313 D 382638 CDS YP_664773.1 109947545 4176478 878629..879066 1 NC_008229.1 hypothetical protein 879066 omp14 fragment 1 4176478 omp14 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664773.1 878629 D 382638 CDS YP_664774.1 109947546 4176479 879682..879912 1 NC_008229.1 hypothetical protein 879912 omp14 fragment 2 4176479 omp14 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664774.1 879682 D 382638 CDS YP_664775.1 109947547 4177668 880409..880993 1 NC_008229.1 nitrite extrusion protein (narK); Function unclear; nitrite extrusion protein fragment 1 880993 narK fragment 1 4177668 narK fragment 1 Helicobacter acinonychis str. Sheeba nitrite extrusion protein fragment 1 YP_664775.1 880409 D 382638 CDS YP_664776.1 109947548 4177669 881001..881555 1 NC_008229.1 nitrite extrusion protein (narK); Function unclear; nitrite extrusion protein fragment 2 881555 narK fragment 2 4177669 narK fragment 2 Helicobacter acinonychis str. Sheeba nitrite extrusion protein fragment 2 YP_664776.1 881001 D 382638 CDS YP_664777.1 109947549 4176921 complement(881745..882722) 1 NC_008229.1 cobalamin synthesis protein/P47K family protein; Specificity unclear; cobalamin synthesis protein 882722 4176921 Hac_1014 Helicobacter acinonychis str. Sheeba cobalamin synthesis protein YP_664777.1 881745 R 382638 CDS YP_664778.1 109947550 4176922 complement(882722..883084) 1 NC_008229.1 hypothetical protein 883084 4176922 Hac_1015 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664778.1 882722 R 382638 CDS YP_664779.1 109947551 4176923 883248..884372 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 884372 4176923 Hac_1016 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664779.1 883248 D 382638 CDS YP_664780.1 109947552 4176924 884369..885061 1 NC_008229.1 High confidence in function and specificity; restriction endonuclease 885061 4176924 Hac_1017 Helicobacter acinonychis str. Sheeba restriction endonuclease YP_664780.1 884369 D 382638 CDS YP_664781.1 109947553 4176925 complement(885102..885983) 1 NC_008229.1 High confidence in function and specificity; polysaccharide deacetylase 885983 4176925 Hac_1018 Helicobacter acinonychis str. Sheeba polysaccharide deacetylase YP_664781.1 885102 R 382638 CDS YP_664782.1 109947554 4176926 complement(885996..886829) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 886829 4176926 Hac_1019 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664782.1 885996 R 382638 CDS YP_664783.1 109947555 4177592 complement(886996..887388) 1 NC_008229.1 hypothetical protein 887388 4177592 Hac_1020 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664783.1 886996 R 382638 CDS YP_664784.1 109947556 4177593 complement(887401..887661) 1 NC_008229.1 hypothetical protein 887661 4177593 Hac_1021 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664784.1 887401 R 382638 CDS YP_664785.1 109947557 4177428 complement(887666..888958) 1 NC_008229.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 888958 hemL 4177428 hemL Helicobacter acinonychis str. Sheeba glutamate-1-semialdehyde aminotransferase YP_664785.1 887666 R 382638 CDS YP_664786.1 109947558 4177594 complement(888968..889522) 1 NC_008229.1 hypothetical protein 889522 4177594 Hac_1023 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664786.1 888968 R 382638 CDS YP_664787.1 109947559 4177595 complement(889650..890663) 1 NC_008229.1 hypothetical protein 890663 4177595 Hac_1024 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664787.1 889650 R 382638 CDS YP_664788.1 109947560 4177596 complement(890673..891125) 1 NC_008229.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 891125 4177596 Hac_1025 Helicobacter acinonychis str. Sheeba rRNA large subunit methyltransferase YP_664788.1 890673 R 382638 CDS YP_664789.1 109947561 4177693 complement(891139..892008) 1 NC_008229.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 892008 accD 4177693 accD Helicobacter acinonychis str. Sheeba acetyl-CoA carboxylase subunit beta YP_664789.1 891139 R 382638 CDS YP_664790.1 109947562 4177597 892092..892706 1 NC_008229.1 recombination protein RecO 892706 4177597 Hac_1027 Helicobacter acinonychis str. Sheeba recombination protein RecO YP_664790.1 892092 D 382638 CDS YP_664791.1 109947563 4177598 892717..893373 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 893373 4177598 Hac_1028 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664791.1 892717 D 382638 CDS YP_664792.1 109947564 4177599 complement(893375..893941) 1 NC_008229.1 hypothetical protein 893941 4177599 Hac_1029 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664792.1 893375 R 382638 CDS YP_664793.1 109947565 4177600 complement(893999..894631) 1 NC_008229.1 NAD(P)H nitroreductase (EC 1.-.-.-); High confidence in function and specificity; oxygen-insensitive NADPH nitroreductase 894631 4177600 Hac_1030 Helicobacter acinonychis str. Sheeba oxygen-insensitive NADPH nitroreductase YP_664793.1 893999 R 382638 CDS YP_664794.1 109947566 4177614 complement(894631..895482) 1 NC_008229.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 895482 lgt 4177614 lgt Helicobacter acinonychis str. Sheeba prolipoprotein diacylglyceryl transferase YP_664794.1 894631 R 382638 CDS YP_664795.1 109947567 4177093 complement(895491..896219) 1 NC_008229.1 High confidence in function and specificity; ribosomal pseudouridine synthase 896219 rluA 4177093 rluA Helicobacter acinonychis str. Sheeba ribosomal pseudouridine synthase YP_664795.1 895491 R 382638 CDS YP_664796.1 109947568 4176134 complement(896237..897373) 1 NC_008229.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 897373 kdtA 4176134 kdtA Helicobacter acinonychis str. Sheeba 3-deoxy-D-manno-octulosonic-acid transferase YP_664796.1 896237 R 382638 CDS YP_664797.1 109947569 4177601 complement(897419..898183) 1 NC_008229.1 Specificity unclear; hypothetical protein 898183 4177601 Hac_1034 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664797.1 897419 R 382638 CDS YP_664798.1 109947570 4177602 complement(898193..898924) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 898924 4177602 Hac_1035 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664798.1 898193 R 382638 CDS YP_664799.1 109947571 4177264 complement(898926..899822) 1 NC_008229.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 899822 glyQ 4177264 glyQ Helicobacter acinonychis str. Sheeba glycyl-tRNA synthetase subunit alpha YP_664799.1 898926 R 382638 CDS YP_664800.1 109947572 4177269 complement(899833..900771) 1 NC_008229.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 900771 gpsA 4177269 gpsA Helicobacter acinonychis str. Sheeba NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_664800.1 899833 R 382638 CDS YP_664801.1 109947573 4177287 complement(901295..901600) 1 NC_008229.1 Function unclear; hypothetical protein 901600 fragment 3 4177287 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664801.1 901295 R 382638 CDS YP_664802.1 109947574 4177027 complement(901658..902173) 1 NC_008229.1 Function unclear; hypothetical protein 902173 fragment 2 4177027 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664802.1 901658 R 382638 CDS YP_664803.1 109947575 4177047 complement(902136..902609) 1 NC_008229.1 Function unclear; hypothetical protein 902609 fragment 1 4177047 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664803.1 902136 R 382638 CDS YP_664804.1 109947576 4177288 complement(902641..902934) 1 NC_008229.1 hypothetical protein 902934 fragment 3 4177288 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664804.1 902641 R 382638 CDS YP_664805.1 109947577 4177028 complement(902921..903118) 1 NC_008229.1 hypothetical protein 903118 fragment 2 4177028 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664805.1 902921 R 382638 CDS YP_664806.1 109947578 4177048 complement(903147..903389) 1 NC_008229.1 hypothetical protein 903389 fragment 1 4177048 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664806.1 903147 R 382638 CDS YP_664807.1 109947579 4176512 complement(903422..903931) 1 NC_008229.1 Function unclear; hypothetical protein 903931 fragment 4 4176512 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664807.1 903422 R 382638 CDS YP_664808.1 109947580 4177289 complement(903954..904256) 1 NC_008229.1 Function unclear; hypothetical protein 904256 fragment 3 4177289 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664808.1 903954 R 382638 CDS YP_664809.1 109947581 4177029 complement(904301..904417) 1 NC_008229.1 hypothetical protein 904417 fragment 2 4177029 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664809.1 904301 R 382638 CDS YP_664810.1 109947582 4177049 complement(904443..904874) 1 NC_008229.1 Specificity unclear; hypothetical protein 904874 fragment 1 4177049 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664810.1 904443 R 382638 CDS YP_664811.1 109947583 4176513 complement(904939..905076) 1 NC_008229.1 Function unclear; hypothetical protein 905076 fragment 4 4176513 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664811.1 904939 R 382638 CDS YP_664812.1 109947584 4177290 complement(905092..905184) 1 NC_008229.1 hypothetical protein 905184 fragment 3 4177290 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664812.1 905092 R 382638 CDS YP_664813.1 109947585 4177030 complement(905352..905909) 1 NC_008229.1 Function unclear; hypothetical protein 905909 fragment 2 4177030 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664813.1 905352 R 382638 CDS YP_664814.1 109947586 4177050 complement(906177..906281) 1 NC_008229.1 hypothetical protein 906281 fragment 1 4177050 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664814.1 906177 R 382638 CDS YP_664815.1 109947587 4176631 complement(906507..906743) 1 NC_008229.1 (O25620) Virulence-associated protein D homolog; High confidence in function and specificity; virulence associated protein D 906743 vapD 4176631 vapD Helicobacter acinonychis str. Sheeba virulence associated protein D YP_664815.1 906507 R 382638 CDS YP_664816.1 109947588 4177603 complement(906863..907144) 1 NC_008229.1 hypothetical protein 907144 4177603 Hac_1053 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664816.1 906863 R 382638 CDS YP_664817.1 109947589 4177604 complement(907161..910220) 1 NC_008229.1 (P94177) Cation efflux system protein czcA; High confidence in function and specificity; heavy metal cation efflux protein 910220 4177604 Hac_1054 Helicobacter acinonychis str. Sheeba heavy metal cation efflux protein YP_664817.1 907161 R 382638 CDS YP_664818.1 109947590 4177437 complement(910220..911284) 1 NC_008229.1 (Q44585) Nickel-cobalt-cadmium resistance protein nccB; Function unclear; cobalt-zinc-cadmium resistance protein 911284 nccB 4177437 nccB Helicobacter acinonychis str. Sheeba cobalt-zinc-cadmium resistance protein YP_664818.1 910220 R 382638 CDS YP_664819.1 109947591 4177605 complement(911281..912588) 1 NC_008229.1 nickel cobalt outer membrane efflux protein 912588 4177605 Hac_1056 Helicobacter acinonychis str. Sheeba nickel cobalt outer membrane efflux protein YP_664819.1 911281 R 382638 CDS YP_664820.1 109947592 4177265 complement(912578..914695) 1 NC_008229.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 914695 glyS 4177265 glyS Helicobacter acinonychis str. Sheeba glycyl-tRNA synthetase subunit beta YP_664820.1 912578 R 382638 CDS YP_664821.1 109947593 4177606 914810..915850 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 915850 4177606 Hac_1058 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664821.1 914810 D 382638 CDS YP_664822.1 109947594 4176775 915861..917339 1 NC_008229.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 917339 pgm 4176775 pgm Helicobacter acinonychis str. Sheeba phosphoglyceromutase YP_664822.1 915861 D 382638 CDS YP_664823.1 109947595 4177758 917354..917632 1 NC_008229.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 917632 gatC 4177758 gatC Helicobacter acinonychis str. Sheeba aspartyl/glutamyl-tRNA amidotransferase subunit C YP_664823.1 917354 D 382638 CDS YP_664824.1 109947596 4176752 917994..918497 1 NC_008229.1 High confidence in function and specificity; ferritin 918497 pfr 4176752 pfr Helicobacter acinonychis str. Sheeba ferritin YP_664824.1 917994 D 382638 CDS YP_664825.1 109947597 4177176 918513..919136 1 NC_008229.1 (P44997) Phosphoserine phosphatase (EC 3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase) (PSPase); High confidence in function and specificity; hypothetical protein 919136 serB 4177176 serB Helicobacter acinonychis str. Sheeba hypothetical protein YP_664825.1 918513 D 382638 CDS YP_664826.1 109947598 4177009 919306..920679 1 NC_008229.1 fucosyltransferase 920679 fuc 4177009 fuc Helicobacter acinonychis str. Sheeba fucosyltransferase YP_664826.1 919306 D 382638 CDS YP_664827.1 109947599 4177607 complement(920689..921279) 1 NC_008229.1 (P32849) DNA repair protein RAD5; Function unclear; hypothetical protein 921279 4177607 Hac_1064 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664827.1 920689 R 382638 CDS YP_664828.1 109947600 4176940 complement(921324..922730) 1 NC_008229.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 922730 aspA 4176940 aspA Helicobacter acinonychis str. Sheeba aspartate ammonia-lyase YP_664828.1 921324 R 382638 CDS YP_664829.1 109947601 4176732 complement(922785..924053) 1 NC_008229.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 924053 mur 4176732 mur Helicobacter acinonychis str. Sheeba UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_664829.1 922785 R 382638 CDS YP_664830.1 109947602 4177608 complement(924056..924463) 1 NC_008229.1 hypothetical protein 924463 4177608 Hac_1067 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664830.1 924056 R 382638 CDS YP_664831.1 109947603 4177021 complement(924474..925295) 1 NC_008229.1 (Q9I291) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase); High confidence in function and specificity; UTP-glucose-1-phosphate uridylyltransferase 925295 galU 4177021 galU Helicobacter acinonychis str. Sheeba UTP-glucose-1-phosphate uridylyltransferase YP_664831.1 924474 R 382638 CDS YP_664832.1 109947604 4177179 complement(925292..926971) 1 NC_008229.1 High confidence in function and specificity; lytic murein transglycosylase 926971 slt 4177179 slt Helicobacter acinonychis str. Sheeba lytic murein transglycosylase YP_664832.1 925292 R 382638 CDS YP_664833.1 109947605 4177609 complement(926980..927273) 1 NC_008229.1 Function unclear; hypothetical protein 927273 4177609 Hac_1070 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664833.1 926980 R 382638 CDS YP_664834.1 109947606 4177262 complement(927270..928589) 1 NC_008229.1 charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 928589 gltX 4177262 gltX Helicobacter acinonychis str. Sheeba glutamylglutaminyl-tRNA synthetase YP_664834.1 927270 R 382638 CDS YP_664835.1 109947607 4176480 928859..929962 1 NC_008229.1 outer membrane protein 15 929962 omp15 4176480 omp15 Helicobacter acinonychis str. Sheeba outer membrane protein 15 YP_664835.1 928859 D 382638 CDS YP_664836.1 109947608 4177078 930001..930849 1 NC_008229.1 Function unclear; hypothetical protein 930849 rfaC 4177078 rfaC Helicobacter acinonychis str. Sheeba hypothetical protein YP_664836.1 930001 D 382638 CDS YP_664837.1 109947609 4176677 930895..932694 1 NC_008229.1 (O25225) GTP-binding protein TypA/BipA homolog; High confidence in function and specificity; GTP-binding protein TYPA/BIPA-like protein 932694 typA 4176677 typA Helicobacter acinonychis str. Sheeba GTP-binding protein TYPA/BIPA-like protein YP_664837.1 930895 D 382638 CDS YP_664838.1 109947610 4176765 932710..933639 1 NC_008229.1 (P29347) Modification methylase StsI (EC 2.1.1.72) (Adenine-specific methyltransferase StsI) (M.StsI); High confidence in function and specificity; site-specific type II DNA methyltransferase 933639 MFOKI 4176765 MFOKI Helicobacter acinonychis str. Sheeba site-specific type II DNA methyltransferase YP_664838.1 932710 D 382638 CDS YP_664839.1 109947611 4177610 complement(933622..934314) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 934314 4177610 Hac_1076 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664839.1 933622 R 382638 CDS YP_664840.1 109947612 4177611 complement(934315..934917) 1 NC_008229.1 (Q9ZKR8) Hypothetical protein JHP0867; High confidence in function and specificity; hypothetical protein 934917 4177611 Hac_1077 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664840.1 934315 R 382638 CDS YP_664841.1 109947613 4176985 complement(934921..935139) 1 NC_008229.1 hypothetical protein 935139 4176985 Hac_1078 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664841.1 934921 R 382638 CDS YP_664842.1 109947614 4177704 935316..936320 1 NC_008229.1 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase 936320 amiF 4177704 amiF Helicobacter acinonychis str. Sheeba formamidase YP_664842.1 935316 D 382638 CDS YP_664843.1 109947615 4176875 complement(936825..937289) 1 NC_008229.1 hom family outer membrane protein 937289 homA 4176875 homA Helicobacter acinonychis str. Sheeba hom family outer membrane protein YP_664843.1 936825 R 382638 CDS YP_664844.1 109947616 4176986 complement(937515..938000) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 938000 4176986 Hac_1081 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664844.1 937515 R 382638 CDS YP_664845.1 109947617 4176987 complement(938105..938860) 1 NC_008229.1 Specificity unclear; hypothetical protein 938860 4176987 Hac_1082 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664845.1 938105 R 382638 CDS YP_664846.1 109947618 4176988 complement(938861..939463) 1 NC_008229.1 (Q9ZKR8) Hypothetical protein JHP0867; High confidence in function and specificity; hypothetical protein 939463 4176988 Hac_1083 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664846.1 938861 R 382638 CDS YP_664847.1 109947619 4176989 complement(939467..940126) 1 NC_008229.1 hypothetical protein 940126 4176989 Hac_1084 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664847.1 939467 R 382638 CDS YP_664848.1 109947620 4177464 complement(940123..940926) 1 NC_008229.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 940926 surE 4177464 surE Helicobacter acinonychis str. Sheeba stationary phase survival protein SurE YP_664848.1 940123 R 382638 CDS YP_664849.1 109947621 4176128 complement(940923..941834) 1 NC_008229.1 (P34802) Geranylgeranyl pyrophosphate synthetase chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)]; High confidence in function and specificity; geranyltranstransferase 941834 ispA 4176128 ispA Helicobacter acinonychis str. Sheeba geranyltranstransferase YP_664849.1 940923 R 382638 CDS YP_664850.1 109947622 4177511 complement(941850..942392) 1 NC_008229.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 942392 folE 4177511 folE Helicobacter acinonychis str. Sheeba GTP cyclohydrolase I YP_664850.1 941850 R 382638 CDS YP_664851.1 109947623 4177544 complement(942393..943322) 1 NC_008229.1 metalloprotease; heat shock protein HtpX 943322 htpX 4177544 htpX Helicobacter acinonychis str. Sheeba heat shock protein HtpX YP_664851.1 942393 R 382638 CDS YP_664852.1 109947624 4176990 complement(943312..944457) 1 NC_008229.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 944457 truD 4176990 truD Helicobacter acinonychis str. Sheeba tRNA pseudouridine synthase D YP_664852.1 943312 R 382638 CDS YP_664853.1 109947625 4177072 complement(944454..945035) 1 NC_008229.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 945035 recR 4177072 recR Helicobacter acinonychis str. Sheeba recombination protein RecR YP_664853.1 944454 R 382638 CDS YP_664854.1 109947626 4176991 945245..945361 1 NC_008229.1 (Q9ZKS7) Probable tautomerase JHP0858 (EC 5.3.2.-); hypothetical protein; tautomerase 945361 4176991 Hac_1091 Helicobacter acinonychis str. Sheeba tautomerase YP_664854.1 945245 D 382638 CDS YP_664855.1 109947627 4176481 complement(945421..946524) 1 NC_008229.1 outer membrane protein 16 946524 omp16 4176481 omp16 Helicobacter acinonychis str. Sheeba outer membrane protein 16 YP_664855.1 945421 R 382638 CDS YP_664856.1 109947628 4177260 946644..948035 1 NC_008229.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 948035 gltX 4177260 gltX Helicobacter acinonychis str. Sheeba glutamyl-tRNA synthetase YP_664856.1 946644 D 382638 CDS YP_664857.1 109947629 4177051 948061..948387 1 NC_008229.1 hypothetical protein 948387 fragment 1 4177051 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664857.1 948061 D 382638 CDS YP_664858.1 109947630 4177031 948600..949283 1 NC_008229.1 hypothetical protein 949283 fragment 2 4177031 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664858.1 948600 D 382638 CDS YP_664859.1 109947631 4176482 949276..949836 1 NC_008229.1 outer membrane protein 17 949836 omp17 4176482 omp17 Helicobacter acinonychis str. Sheeba outer membrane protein 17 YP_664859.1 949276 D 382638 CDS YP_664860.1 109947632 4176136 950187..951437 1 NC_008229.1 (Q8XA20) Glutathione-regulated potassium-efflux system protein kefC (K(+)/H(+) antiporter); High confidence in function and specificity; glutathione-regulated potassium-efflux system protein 951437 kefB 4176136 kefB Helicobacter acinonychis str. Sheeba glutathione-regulated potassium-efflux system protein YP_664860.1 950187 D 382638 CDS YP_664861.1 109947633 4176745 951538..953274 1 NC_008229.1 (P94876) Oligoendopeptidase F chromosomal (EC 3.4.24.-); High confidence in function and specificity; hypothetical protein 953274 pepF 4176745 pepF Helicobacter acinonychis str. Sheeba hypothetical protein YP_664861.1 951538 D 382638 CDS YP_664862.1 109947634 4176992 953259..953747 1 NC_008229.1 hypothetical protein 953747 4176992 Hac_1099 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664862.1 953259 D 382638 CDS YP_664863.1 109947635 4176993 953759..955246 1 NC_008229.1 hypothetical protein 955246 4176993 Hac_1100 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664863.1 953759 D 382638 CDS YP_664864.1 109947636 4176994 955248..955562 1 NC_008229.1 hypothetical protein 955562 4176994 Hac_1101 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664864.1 955248 D 382638 CDS YP_664865.1 109947637 4176995 955572..956342 1 NC_008229.1 hypothetical protein 956342 4176995 Hac_1102 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664865.1 955572 D 382638 CDS YP_664866.1 109947638 4176996 956644..956961 1 NC_008229.1 hypothetical protein 956961 4176996 Hac_1103 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664866.1 956644 D 382638 CDS YP_664867.1 109947639 4176997 957067..958962 1 NC_008229.1 Function unclear; hypothetical protein 958962 4176997 Hac_1106 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664867.1 957067 D 382638 CDS YP_664868.1 109947640 4177535 959011..959349 1 NC_008229.1 ); Function unclear; type I restriction enzyme R protein fragment 1 959349 hsdR fragment 1 4177535 hsdR fragment 1 Helicobacter acinonychis str. Sheeba type I restriction enzyme R protein fragment 1 YP_664868.1 959011 D 382638 CDS YP_664869.1 109947641 4177536 959374..959688 1 NC_008229.1 Function unclear; type I restriction enzyme R protein fragment 2 959688 hsdR fragment 2 4177536 hsdR fragment 2 Helicobacter acinonychis str. Sheeba type I restriction enzyme R protein fragment 2 YP_664869.1 959374 D 382638 CDS YP_664870.1 109947642 4177537 959859..961229 1 NC_008229.1 (Q60295) type I restriction enzyme MjaXP R protein (EC 3.1.21.3); Function unclear; type I restriction enzyme R protein fragment 3 961229 hsdR fragment 3 4177537 hsdR fragment 3 Helicobacter acinonychis str. Sheeba type I restriction enzyme R protein fragment 3 YP_664870.1 959859 D 382638 CDS YP_664871.1 109947643 4177538 961213..962142 1 NC_008229.1 High confidence in function and specificity; type I restriction enzyme R protein fragment 4 962142 hsdR fragment 4 4177538 hsdR fragment 4 Helicobacter acinonychis str. Sheeba type I restriction enzyme R protein fragment 4 YP_664871.1 961213 D 382638 CDS YP_664872.1 109947644 4177534 962132..963763 1 NC_008229.1 (Q47163) Type I restriction enzyme EcoprrI M protein (EC 2.1.1.72) (M.EcoprrI); High confidence in function and specificity; type I restriction enzyme M protein 963763 hsdM 4177534 hsdM Helicobacter acinonychis str. Sheeba type I restriction enzyme M protein YP_664872.1 962132 D 382638 CDS YP_664873.1 109947645 4176998 963768..964025 1 NC_008229.1 hypothetical protein 964025 4176998 Hac_1112 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664873.1 963768 D 382638 CDS YP_664874.1 109947646 4177539 964109..964882 1 NC_008229.1 (Q60296) type I restriction enzyme MjaXP specificity protein (S protein) (S.MjaXP); High confidence in function and specificity; type I restriction-modification enzyme, S subunit 964882 hsdS 4177539 hsdS Helicobacter acinonychis str. Sheeba type I restriction-modification enzyme, S subunit YP_664874.1 964109 D 382638 CDS YP_664875.1 109947647 4176554 965112..967136 1 NC_008229.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 967136 ppk 4176554 ppk Helicobacter acinonychis str. Sheeba polyphosphate kinase YP_664875.1 965112 D 382638 CDS YP_664876.1 109947648 4177752 967173..968228 1 NC_008229.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 968228 pyrD 4177752 pyrD Helicobacter acinonychis str. Sheeba dihydroorotate dehydrogenase 2 YP_664876.1 967173 D 382638 CDS YP_664877.1 109947649 4176558 968225..969559 1 NC_008229.1 (P55679) Hypothetical zinc protease y4wA (EC 3.4.99.-); High confidence in function and specificity; zinc protease 969559 pqqE 4176558 pqqE Helicobacter acinonychis str. Sheeba zinc protease YP_664877.1 968225 D 382638 CDS YP_664878.1 109947650 4176401 969577..970479 1 NC_008229.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 970479 dapA 4176401 dapA Helicobacter acinonychis str. Sheeba dihydrodipicolinate synthase YP_664878.1 969577 D 382638 CDS YP_664879.1 109947651 4177420 970476..971264 1 NC_008229.1 Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 971264 hdhA 4177420 hdhA Helicobacter acinonychis str. Sheeba 7-alpha-hydroxysteroid dehydrogenase YP_664879.1 970476 D 382638 CDS YP_664880.1 109947652 4176999 971274..971882 1 NC_008229.1 hypothetical protein 971882 4176999 Hac_1119 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664880.1 971274 D 382638 CDS YP_664881.1 109947653 4176777 971879..972418 1 NC_008229.1 (P46322) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase) (PGP synthase); Function unclear; hypothetical protein 972418 pgsA 4176777 pgsA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664881.1 971879 D 382638 CDS YP_664882.1 109947654 4177098 972694..974136 1 NC_008229.1 (Q47689) Probable S-methylmethionine permease; High confidence in function and specificity; amino acid permease 974136 rocE 4177098 rocE Helicobacter acinonychis str. Sheeba amino acid permease YP_664882.1 972694 D 382638 CDS YP_664883.1 109947655 4177545 974183..975613 1 NC_008229.1 High confidence in function and specificity; serine protease 975613 htrA 4177545 htrA Helicobacter acinonychis str. Sheeba serine protease YP_664883.1 974183 D 382638 CDS YP_664884.1 109947656 4176130 975632..976852 1 NC_008229.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 976852 ispDF 4176130 ispDF Helicobacter acinonychis str. Sheeba bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein YP_664884.1 975632 D 382638 CDS YP_664885.1 109947657 4177000 976874..977770 1 NC_008229.1 (P45337) Transcriptional regulatory protein qseB; Specificity unclear; two component response regulator 977770 4177000 Hac_1125 Helicobacter acinonychis str. Sheeba two component response regulator YP_664885.1 976874 D 382638 CDS YP_664886.1 109947658 4176787 977903..978727 1 NC_008229.1 (Q9KAV6) Probable 5-3 exonuclease (EC 3.1.11.-); Function unclear; DNA polymerase I 978727 polA 4176787 polA Helicobacter acinonychis str. Sheeba DNA polymerase I YP_664886.1 977903 D 382638 CDS YP_664887.1 109947659 4177001 complement(978990..980240) 1 NC_008229.1 hypothetical protein 980240 4177001 Hac_1127 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664887.1 978990 R 382638 CDS YP_664888.1 109947660 4176592 980408..981271 1 NC_008229.1 High confidence in function and specificity; co-chaperone-curved DNA binding protein A 981271 cbpA 4176592 cbpA Helicobacter acinonychis str. Sheeba co-chaperone-curved DNA binding protein A YP_664888.1 980408 D 382638 CDS YP_664889.1 109947661 4177542 981281..981652 1 NC_008229.1 (P45277) HTH-type transcriptional regulator zntR homolog; High confidence in function and specificity; heat shock transcriptional regulator 981652 hspR 4177542 hspR Helicobacter acinonychis str. Sheeba heat shock transcriptional regulator YP_664889.1 981281 D 382638 CDS YP_664890.1 109947662 4177002 981649..982830 1 NC_008229.1 (Q9WYX8) Hypothetical protein TM0508; Specificity unclear; recombination factor protein RarA 982830 4177002 Hac_1130 Helicobacter acinonychis str. Sheeba recombination factor protein RarA YP_664890.1 981649 D 382638 CDS YP_664891.1 109947663 4177018 982985..983437 1 NC_008229.1 (Q9ZM26) Ferric uptake regulation protein (Ferric uptake regulator); High confidence in function and specificity; ferric uptake regulation protein 983437 fur 4177018 fur Helicobacter acinonychis str. Sheeba ferric uptake regulation protein YP_664891.1 982985 D 382638 CDS YP_664892.1 109947664 4177003 complement(983447..983953) 1 NC_008229.1 Function unclear; hypothetical protein 983953 4177003 Hac_1132 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664892.1 983447 R 382638 CDS YP_664893.1 109947665 4176965 complement(983950..984486) 1 NC_008229.1 (P37673) Hypothetical protein yiaL; Function unclear; hypothetical protein 984486 4176965 Hac_1133 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664893.1 983950 R 382638 CDS YP_664894.1 109947666 4177506 complement(984516..985367) 1 NC_008229.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 985367 fliY 4177506 fliY Helicobacter acinonychis str. Sheeba flagellar motor switch protein FliY YP_664894.1 984516 R 382638 CDS YP_664895.1 109947667 4177501 complement(985371..986435) 1 NC_008229.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 986435 fliM 4177501 fliM Helicobacter acinonychis str. Sheeba flagellar motor switch protein FliM YP_664895.1 985371 R 382638 CDS YP_664896.1 109947668 4177256 complement(986428..987204) 1 NC_008229.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 987204 fliA 4177256 fliA Helicobacter acinonychis str. Sheeba flagellar biosynthesis sigma factor YP_664896.1 986428 R 382638 CDS YP_664897.1 109947669 4176966 complement(987182..987496) 1 NC_008229.1 hypothetical protein 987496 4176966 Hac_1137 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664897.1 987182 R 382638 CDS YP_664898.1 109947670 4176967 complement(987501..988385) 1 NC_008229.1 flagellar biosynthesis switch protein; High confidence in function and specificity; ATP-binding protein 988385 4176967 Hac_1138 Helicobacter acinonychis str. Sheeba ATP-binding protein YP_664898.1 987501 R 382638 CDS YP_664899.1 109947671 4177255 complement(988382..989755) 1 NC_008229.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 989755 flhF 4177255 flhF Helicobacter acinonychis str. Sheeba flagellar biosynthesis regulator FlhF YP_664899.1 988382 R 382638 CDS YP_664900.1 109947672 4177512 complement(989752..990243) 1 NC_008229.1 (O25680) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (78-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HPPK) (6-hydroxymethyl-78-dihydropterin pyrophosphokinase) (PPPK); High confidence in function and specificity; 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 990243 folK 4177512 folK Helicobacter acinonychis str. Sheeba 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_664900.1 989752 R 382638 CDS YP_664901.1 109947673 4176968 complement(990240..991313) 1 NC_008229.1 (P54518) peptidase yqhT (EC 3.4.-.-); High confidence in function and specificity; proline peptidase 991313 4176968 Hac_1141 Helicobacter acinonychis str. Sheeba proline peptidase YP_664901.1 990240 R 382638 CDS YP_664902.1 109947674 4176938 complement(991332..991838) 1 NC_008229.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 991838 aroQ 4176938 aroQ Helicobacter acinonychis str. Sheeba 3-dehydroquinate dehydratase YP_664902.1 991332 R 382638 CDS YP_664903.1 109947675 4176969 complement(991955..993250) 1 NC_008229.1 (P27243) O-antigen ligase; Function unclear; hypothetical protein 993250 4176969 Hac_1143 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664903.1 991955 R 382638 CDS YP_664904.1 109947676 4177154 complement(993306..993578) 1 NC_008229.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 993578 rpsO 4177154 rpsO Helicobacter acinonychis str. Sheeba 30S ribosomal protein S15 YP_664904.1 993306 R 382638 CDS YP_664905.1 109947677 4177253 993736..995937 1 NC_008229.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 995937 flhA 4177253 flhA Helicobacter acinonychis str. Sheeba flagellar biosynthesis protein FlhA YP_664905.1 993736 D 382638 CDS YP_664906.1 109947678 4176970 995957..997000 1 NC_008229.1 Function unclear; hypothetical protein 997000 4176970 Hac_1146 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664906.1 995957 D 382638 CDS YP_664907.1 109947679 4176486 complement(997818..998093) 1 NC_008229.1 hypothetical protein 998093 omp18 fragment 4 4176486 omp18 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664907.1 997818 R 382638 CDS YP_664908.1 109947680 4176485 complement(998137..998343) 1 NC_008229.1 hypothetical protein 998343 omp18 fragment 3 4176485 omp18 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664908.1 998137 R 382638 CDS YP_664909.1 109947681 4176484 complement(998401..998769) 1 NC_008229.1 hypothetical protein 998769 omp18 fragment 2 4176484 omp18 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664909.1 998401 R 382638 CDS YP_664910.1 109947683 4176483 complement(998820..999014) 1 NC_008229.1 hypothetical protein 999014 omp18 fragment 1 4176483 omp18 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664910.1 998820 R 382638 CDS YP_664911.1 109947682 4176971 999013..999204 1 NC_008229.1 outer membrane protein region, nucleotide level blastn; hypothetical protein; hypothetical protein 999204 4176971 Hac_1152 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664911.1 999013 D 382638 CDS YP_664912.1 109947684 4176972 complement(999589..1000260) 1 NC_008229.1 (P77380) Transcriptional regulatory protein cusR; High confidence in function and specificity; two-component system regulatory protein 1000260 4176972 Hac_1154 Helicobacter acinonychis str. Sheeba two-component system regulatory protein YP_664912.1 999589 R 382638 CDS YP_664913.1 109947685 4176973 complement(1000620..1001732) 1 NC_008229.1 (O25685) Hypothetical protein HP1044; High confidence in function and specificity; integral membrane protein 1001732 4176973 Hac_1155 Helicobacter acinonychis str. Sheeba integral membrane protein YP_664913.1 1000620 R 382638 CDS YP_664914.1 109947686 4177696 1001939..1003927 1 NC_008229.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1003927 acoE 4177696 acoE Helicobacter acinonychis str. Sheeba acetyl-CoA synthetase YP_664914.1 1001939 D 382638 CDS YP_664915.1 109947687 4176974 complement(1003980..1004420) 1 NC_008229.1 (Q9ZM44) Hypothetical UPF0090 protein JHP0379; Specificity unclear; hypothetical protein 1004420 4176974 Hac_1157 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664915.1 1003980 R 382638 CDS YP_664916.1 109947688 4177065 complement(1004413..1004748) 1 NC_008229.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1004748 rbfA 4177065 rbfA Helicobacter acinonychis str. Sheeba ribosome-binding factor A YP_664916.1 1004413 R 382638 CDS YP_664917.1 109947689 4177681 complement(1004748..1007573) 1 NC_008229.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1007573 infB 4177681 infB Helicobacter acinonychis str. Sheeba translation initiation factor IF-2 YP_664917.1 1004748 R 382638 CDS YP_664918.1 109947690 4176975 complement(1007570..1007797) 1 NC_008229.1 (O66647) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS); Function unclear; nucleic acid binding transriptional terminator 1007797 4176975 Hac_1160 Helicobacter acinonychis str. Sheeba nucleic acid binding transriptional terminator YP_664918.1 1007570 R 382638 CDS YP_664919.1 109947691 4177475 complement(1007811..1008692) 1 NC_008229.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1008692 thrB 4177475 thrB Helicobacter acinonychis str. Sheeba homoserine kinase YP_664919.1 1007811 R 382638 CDS YP_664920.1 109947692 4176976 complement(1008747..1009226) 1 NC_008229.1 (Q8RF47) Bifunctional 3-dehydroquinate synthase/phosphatase [Includes: 3-dehydroquinate synthase (EC 4.2.3.4); Unknown phosphatase (EC 3.6.1.-)]; Function unclear; hypothetical protein 1009226 4176976 Hac_1162 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664920.1 1008747 R 382638 CDS YP_664921.1 109947693 4177622 complement(1009248..1010135) 1 NC_008229.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1010135 lpxC 4177622 lpxC Helicobacter acinonychis str. Sheeba UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_664921.1 1009248 R 382638 CDS YP_664922.1 109947694 4176767 complement(1010132..1010719) 1 NC_008229.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1010719 minC 4176767 minC Helicobacter acinonychis str. Sheeba septum formation inhibitor YP_664922.1 1010132 R 382638 CDS YP_664923.1 109947695 4176977 complement(1010722..1012050) 1 NC_008229.1 Function unclear; metalloendopeptidase related membrane protein 1012050 4176977 Hac_1165 Helicobacter acinonychis str. Sheeba metalloendopeptidase related membrane protein YP_664923.1 1010722 R 382638 CDS YP_664924.1 109947696 4176978 complement(1012060..1013004) 1 NC_008229.1 (O67300) Hypothetical protein AQ_1259 precursor; hypothetical protein; hypothetical protein 1013004 4176978 Hac_1166 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664924.1 1012060 R 382638 CDS YP_664925.1 109947697 4176979 complement(1013013..1013846) 1 NC_008229.1 hypothetical protein 1013846 4176979 Hac_1167 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664925.1 1013013 R 382638 CDS YP_664926.1 109947698 4176980 complement(1013836..1014558) 1 NC_008229.1 hypothetical protein 1014558 4176980 Hac_1168 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664926.1 1013836 R 382638 CDS YP_664927.1 109947699 4177336 1014706..1015518 1 NC_008229.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1015518 panB 4177336 panB Helicobacter acinonychis str. Sheeba 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_664927.1 1014706 D 382638 CDS YP_664928.1 109947700 4177161 1015518..1016528 1 NC_008229.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1016528 ruvB 4177161 ruvB Helicobacter acinonychis str. Sheeba Holliday junction DNA helicase RuvB YP_664928.1 1015518 D 382638 CDS YP_664929.1 109947701 4177471 1016596..1017063 1 NC_008229.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 1017063 tatB 4177471 tatB Helicobacter acinonychis str. Sheeba sec-independent translocase YP_664929.1 1016596 D 382638 CDS YP_664930.1 109947702 4177472 1017056..1017796 1 NC_008229.1 (O25701) Sec-independent protein translocase protein tatC homolog; High confidence in function and specificity; sec-independent protein translocase 1017796 tatC 4177472 tatC Helicobacter acinonychis str. Sheeba sec-independent protein translocase YP_664930.1 1017056 D 382638 CDS YP_664931.1 109947703 4177063 1017793..1018830 1 NC_008229.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1018830 queA 4177063 queA Helicobacter acinonychis str. Sheeba S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_664931.1 1017793 D 382638 CDS YP_664932.1 109947704 4177764 1018827..1019363 1 NC_008229.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1019363 gidB 4177764 gidB Helicobacter acinonychis str. Sheeba 16S rRNA methyltransferase GidB YP_664932.1 1018827 D 382638 CDS YP_664933.1 109947705 4176981 1019357..1019587 1 NC_008229.1 hypothetical protein 1019587 4176981 Hac_1175 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664933.1 1019357 D 382638 CDS YP_664934.1 109947706 4176982 1019590..1019997 1 NC_008229.1 hypothetical protein 1019997 4176982 Hac_1176 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664934.1 1019590 D 382638 CDS YP_664935.1 109947707 4176487 complement(1020133..1020783) 1 NC_008229.1 outer membrane protein 19 1020783 omp19 4176487 omp19 Helicobacter acinonychis str. Sheeba outer membrane protein 19 YP_664935.1 1020133 R 382638 CDS YP_664936.1 109947708 4176604 1021049..1021423 1 NC_008229.1 (P71129) Chemotaxis protein cheY homolog; High confidence in function and specificity; CheY response regulator 1021423 cheY 4176604 cheY Helicobacter acinonychis str. Sheeba CheY response regulator YP_664936.1 1021049 D 382638 CDS YP_664937.1 109947709 4176562 1021424..1022413 1 NC_008229.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 1022413 prmA 4176562 prmA Helicobacter acinonychis str. Sheeba 50S ribosomal protein L11 methyltransferase YP_664937.1 1021424 D 382638 CDS YP_664938.1 109947710 4176528 1022422..1024329 1 NC_008229.1 (Q9ZM66) Cell division protein ftsH homolog (EC 3.4.24.-); High confidence in function and specificity; membrane bound zinc metallopeptidase 1024329 ftsH 4176528 ftsH Helicobacter acinonychis str. Sheeba membrane bound zinc metallopeptidase YP_664938.1 1022422 D 382638 CDS YP_664939.1 109947711 4177738 1024577..1025290 1 NC_008229.1 (Q9ZM68) CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) (Phosphatidylserine synthase); High confidence in function and specificity; hypothetical protein 1025290 pssA 4177738 pssA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664939.1 1024577 D 382638 CDS YP_664940.1 109947712 4176897 1025287..1027512 1 NC_008229.1 (Q59467) Copper-transporting ATPase (EC 3.6.3.4); High confidence in function and specificity; copper-transporting ATPase 1027512 copA 4176897 copA Helicobacter acinonychis str. Sheeba copper-transporting ATPase YP_664940.1 1025287 D 382638 CDS YP_664941.1 109947713 4176898 1027513..1027713 1 NC_008229.1 (Q9ZM70) COP associated protein (Copper ion binding protein); High confidence in function and specificity; copper iron binding protein 1027713 copP 4176898 copP Helicobacter acinonychis str. Sheeba copper iron binding protein YP_664941.1 1027513 D 382638 CDS YP_664942.1 109947714 4177052 1027893..1028204 1 NC_008229.1 hypothetical protein 1028204 fragment 1 4177052 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664942.1 1027893 D 382638 CDS YP_664943.1 109947715 4177032 1028206..1028487 1 NC_008229.1 hypothetical protein 1028487 fragment 2 4177032 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664943.1 1028206 D 382638 CDS YP_664944.1 109947716 4177291 1028629..1028721 1 NC_008229.1 hypothetical protein 1028721 fragment 3 4177291 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664944.1 1028629 D 382638 CDS YP_664945.1 109947717 4176983 complement(1028745..1030019) 1 NC_008229.1 hypothetical protein 1030019 4176983 Hac_1188 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664945.1 1028745 R 382638 CDS YP_664946.1 109947718 4176984 1030193..1030714 1 NC_008229.1 hypothetical protein 1030714 4176984 Hac_1189 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664946.1 1030193 D 382638 CDS YP_664947.1 109947719 4177180 complement(1030711..1031688) 1 NC_008229.1 Region start changed from 1031643 to 1031688 (45 bases); high-affinity nickel transport protein 1031688 4177180 Hac_1190 Helicobacter acinonychis str. Sheeba high-affinity nickel transport protein YP_664947.1 1030711 R 382638 CDS YP_664948.1 109947720 4177181 1031891..1032121 1 NC_008229.1 hypothetical protein 1032121 4177181 Hac_1192 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664948.1 1031891 D 382638 CDS YP_664949.1 109947721 4177182 1032172..1032369 1 NC_008229.1 hypothetical protein 1032369 4177182 Hac_1193 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664949.1 1032172 D 382638 CDS YP_664950.1 109947722 4177183 complement(1032834..1033082) 1 NC_008229.1 HP0827: ss-DNA binding protein 12RNP2 precursor; High confidence in function and specificity; RNA-binding protein 1033082 4177183 Hac_1195 Helicobacter acinonychis str. Sheeba RNA-binding protein YP_664950.1 1032834 R 382638 CDS YP_664951.1 109947723 4177103 complement(1033225..1033905) 1 NC_008229.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1033905 atpB 4177103 atpB Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit A YP_664951.1 1033225 R 382638 CDS YP_664952.1 109947724 4177276 complement(1034027..1035472) 1 NC_008229.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1035472 guaB 4177276 guaB Helicobacter acinonychis str. Sheeba inosine 5'-monophosphate dehydrogenase YP_664952.1 1034027 R 382638 CDS YP_664953.1 109947725 4177756 complement(1035482..1036843) 1 NC_008229.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1036843 gatA 4177756 gatA Helicobacter acinonychis str. Sheeba aspartyl/glutamyl-tRNA amidotransferase subunit A YP_664953.1 1035482 R 382638 CDS YP_664954.1 109947726 4177184 1036910..1037086 1 NC_008229.1 hypothetical protein 1037086 4177184 Hac_1199 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664954.1 1036910 D 382638 CDS YP_664955.1 109947727 4177185 complement(1037153..1037755) 1 NC_008229.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1037755 coaE 4177185 coaE Helicobacter acinonychis str. Sheeba dephospho-CoA kinase YP_664955.1 1037153 R 382638 CDS YP_664956.1 109947728 4177461 complement(1037757..1038545) 1 NC_008229.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 1038545 speE 4177461 speE Helicobacter acinonychis str. Sheeba spermidine synthase YP_664956.1 1037757 R 382638 CDS YP_664957.1 109947729 4177186 complement(1038622..1039497) 1 NC_008229.1 hypothetical protein 1039497 4177186 Hac_1203 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664957.1 1038622 R 382638 CDS YP_664958.1 109947730 4177187 1039574..1040962 1 NC_008229.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1040962 engA 4177187 engA Helicobacter acinonychis str. Sheeba GTP-binding protein EngA YP_664958.1 1039574 D 382638 CDS YP_664959.1 109947731 4177546 1041103..1041387 1 NC_008229.1 (Q92SJ7) Integration host factor beta-subunit (IHF-beta); High confidence in function and specificity; histon like DNA-binding protein HU 1041387 hupB 4177546 hupB Helicobacter acinonychis str. Sheeba histon like DNA-binding protein HU YP_664959.1 1041103 D 382638 CDS YP_664960.1 109947732 4177188 1041845..1042450 1 NC_008229.1 Function unclear; hypothetical protein 1042450 4177188 Hac_1207 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664960.1 1041845 D 382638 CDS YP_664961.1 109947733 4177189 1042470..1043087 1 NC_008229.1 hypothetical protein 1043087 4177189 Hac_1208 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664961.1 1042470 D 382638 CDS YP_664962.1 109947734 4176441 1043084..1044850 1 NC_008229.1 (P59741) Long-chain fatty acid transport protein precursor (Outer membrane fadL protein) (Outer membrane flp protein); Function unclear; outer membrane transport protein P1 1044850 ompP1 4176441 ompP1 Helicobacter acinonychis str. Sheeba outer membrane transport protein P1 YP_664962.1 1043084 D 382638 CDS YP_664963.1 109947735 4176825 1044854..1045855 1 NC_008229.1 (Q58461) Hypothetical protein MJ1061; High confidence in function and specificity; flagellar glycosylation protein 1045855 flaA1 4176825 flaA1 Helicobacter acinonychis str. Sheeba flagellar glycosylation protein YP_664963.1 1044854 D 382638 CDS YP_664964.1 109947736 4177127 1045852..1047129 1 NC_008229.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1047129 dfp 4177127 dfp Helicobacter acinonychis str. Sheeba bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_664964.1 1045852 D 382638 CDS YP_664965.1 109947737 4177190 1047129..1047866 1 NC_008229.1 hypothetical protein 1047866 4177190 Hac_1212 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664965.1 1047129 D 382638 CDS YP_664966.1 109947738 4177191 1048004..1048987 1 NC_008229.1 (P08455) Modification methylase NgoPII (EC 2.1.1.37) (Cytosine-specific methyltransferase NgoPII) (M.NgoPII); High confidence in function and specificity; site-specific DNA methyltransferase 1048987 4177191 Hac_1213 Helicobacter acinonychis str. Sheeba site-specific DNA methyltransferase YP_664966.1 1048004 D 382638 CDS YP_664967.1 109947739 4177192 1048984..1049937 1 NC_008229.1 (O68584) Type II restriction enzyme HaeIII (EC 3.1.21.4) (Endonuclease HaeIII) (R.HaeIII); Specificity unclear; type II restriction endonuclease 1049937 4177192 Hac_1214 Helicobacter acinonychis str. Sheeba type II restriction endonuclease YP_664967.1 1048984 D 382638 CDS YP_664968.1 109947740 4177193 1050101..1050793 1 NC_008229.1 (P75806) Hypothetical protein ybjG; Specificity unclear; hypothetical protein 1050793 4177193 Hac_1215 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664968.1 1050101 D 382638 CDS YP_664969.1 109947741 4177194 complement(1051035..1051952) 1 NC_008229.1 related to restriction endonuclease-replacing gene A; Function unclear; hypothetical protein 1051952 4177194 Hac_1216 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664969.1 1051035 R 382638 CDS YP_664970.1 109947742 4177715 complement(1051954..1053555) 1 NC_008229.1 High confidence in function and specificity; ABC transporter ATP-binding protein 1053555 yheS 4177715 yheS Helicobacter acinonychis str. Sheeba ABC transporter ATP-binding protein YP_664970.1 1051954 R 382638 CDS YP_664971.1 109947743 4177709 1053704..1055203 1 NC_008229.1 (Q51392) Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) (Alginate biosynthesis protein algI); High confidence in function and specificity; alginate o-acetyltransferase 1055203 algI 4177709 algI Helicobacter acinonychis str. Sheeba alginate o-acetyltransferase YP_664971.1 1053704 D 382638 CDS YP_664972.1 109947744 4177195 1055213..1056310 1 NC_008229.1 hypothetical protein 1056310 4177195 Hac_1219 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664972.1 1055213 D 382638 CDS YP_664973.1 109947745 4177267 complement(1056313..1056879) 1 NC_008229.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1056879 gmhA 4177267 gmhA Helicobacter acinonychis str. Sheeba phosphoheptose isomerase YP_664973.1 1056313 R 382638 CDS YP_664974.1 109947746 4176636 complement(1056884..1058275) 1 NC_008229.1 High confidence in function and specificity; ADP-heptose synthase 1058275 waaE 4176636 waaE Helicobacter acinonychis str. Sheeba ADP-heptose synthase YP_664974.1 1056884 R 382638 CDS YP_664975.1 109947747 4176635 complement(1058272..1059264) 1 NC_008229.1 (P45048) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) (ADP-glyceromanno-heptose 6-epimerase); High confidence in function and specificity; ADP-L-glycero-D-manno-heptose-6-epimerase 1059264 waaD 4176635 waaD Helicobacter acinonychis str. Sheeba ADP-L-glycero-D-manno-heptose-6-epimerase YP_664975.1 1058272 R 382638 CDS YP_664976.1 109947748 4177196 complement(1059273..1059794) 1 NC_008229.1 High confidence in function and specificity; histinol phosphatase 1059794 4177196 Hac_1223 Helicobacter acinonychis str. Sheeba histinol phosphatase YP_664976.1 1059273 R 382638 CDS YP_664977.1 109947749 4177197 complement(1059784..1060530) 1 NC_008229.1 Specificity unclear; hypothetical protein 1060530 4177197 Hac_1224 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664977.1 1059784 R 382638 CDS YP_664978.1 109947750 4177198 complement(1060527..1061192) 1 NC_008229.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1061192 4177198 Hac_1225 Helicobacter acinonychis str. Sheeba pantothenate kinase YP_664978.1 1060527 R 382638 CDS YP_664979.1 109947751 4176257 complement(1061197..1062873) 1 NC_008229.1 (Q83BS1) Translation initiation factor IF-2; High confidence in function and specificity; hypothetical protein 1062873 4176257 Hac_1226 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664979.1 1061197 R 382638 CDS YP_664980.1 109947752 4176258 complement(1062899..1063525) 1 NC_008229.1 hypothetical protein 1063525 4176258 Hac_1227 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664980.1 1062899 R 382638 CDS YP_664981.1 109947753 4176385 complement(1063522..1063959) 1 NC_008229.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1063959 dut 4176385 dut Helicobacter acinonychis str. Sheeba deoxyuridine 5'-triphosphate nucleotidohydrolase YP_664981.1 1063522 R 382638 CDS YP_664982.1 109947754 4177271 complement(1063949..1064443) 1 NC_008229.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1064443 greA 4177271 greA Helicobacter acinonychis str. Sheeba transcription elongation factor GreA YP_664982.1 1063949 R 382638 CDS YP_664983.1 109947755 4177621 complement(1064484..1065566) 1 NC_008229.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase 1065566 lpxB 4177621 lpxB Helicobacter acinonychis str. Sheeba ipid-A-disaccharide synthase YP_664983.1 1064484 R 382638 CDS YP_664984.1 109947756 4176259 complement(1065566..1066024) 1 NC_008229.1 Specificity unclear; hypothetical protein 1066024 4176259 Hac_1231 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664984.1 1065566 R 382638 CDS YP_664985.1 109947757 4177551 complement(1066030..1066383) 1 NC_008229.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 1066383 hypA 4177551 hypA Helicobacter acinonychis str. Sheeba hydrogenase nickel incorporation protein YP_664985.1 1066030 R 382638 CDS YP_664986.1 109947758 4177244 complement(1066444..1068600) 1 NC_008229.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1068600 flgE 4177244 flgE Helicobacter acinonychis str. Sheeba flagellar hook protein FlgE YP_664986.1 1066444 R 382638 CDS YP_664987.1 109947759 4176595 complement(1068820..1069560) 1 NC_008229.1 (P06282) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26) (CDP-diacylglycerol phosphatidylhydrolase) (CDP-diglyceride hydrolase); High confidence in function and specificity; CDP-diacylglycerol pyrophosphatase 1069560 cdh 4176595 cdh Helicobacter acinonychis str. Sheeba CDP-diacylglycerol pyrophosphatase YP_664987.1 1068820 R 382638 CDS YP_664988.1 109947760 4176780 1069849..1070148 1 NC_008229.1 (P16680) PhnA protein; Function unclear; alkylphosphonate uptake protein 1070148 phnA 4176780 phnA Helicobacter acinonychis str. Sheeba alkylphosphonate uptake protein YP_664988.1 1069849 D 382638 CDS YP_664989.1 109947761 4176260 complement(1070187..1070402) 1 NC_008229.1 hypothetical protein 1070402 4176260 Hac_1237 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664989.1 1070187 R 382638 CDS YP_664990.1 109947762 4176261 complement(1070470..1071345) 1 NC_008229.1 katA associated protein 1071345 4176261 Hac_1238 Helicobacter acinonychis str. Sheeba katA associated protein YP_664990.1 1070470 R 382638 CDS YP_664991.1 109947763 4176131 complement(1071496..1073013) 1 NC_008229.1 (P77872) Catalase (EC 1.11.1.6); High confidence in function and specificity; hypothetical protein 1073013 katA 4176131 katA Helicobacter acinonychis str. Sheeba hypothetical protein YP_664991.1 1071496 R 382638 CDS YP_664992.1 109947764 4176523 1073314..1075683 1 NC_008229.1 (P44523) Heme/hemopexin utilization protein C precursor; Function unclear; iron-regulated outer membrane protein 1075683 frpB 4176523 frpB Helicobacter acinonychis str. Sheeba iron-regulated outer membrane protein YP_664992.1 1073314 D 382638 CDS YP_664993.1 109947765 4177162 complement(1075957..1076430) 1 NC_008229.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1076430 ruvC 4177162 ruvC Helicobacter acinonychis str. Sheeba Holliday junction resolvase YP_664993.1 1075957 R 382638 CDS YP_664994.1 109947766 4176262 1076563..1077294 1 NC_008229.1 Function unclear; hypothetical protein 1077294 4176262 Hac_1243 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664994.1 1076563 D 382638 CDS YP_664995.1 109947767 4176876 1077511..1077927 1 NC_008229.1 hypothetical protein 1077927 homB fragment 1 4176876 homB fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664995.1 1077511 D 382638 CDS YP_664996.1 109947768 4176877 1077959..1078885 1 NC_008229.1 hypothetical protein 1078885 homB fragment 2 4176877 homB fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664996.1 1077959 D 382638 CDS YP_664997.1 109947769 4176878 1078986..1079120 1 NC_008229.1 hypothetical protein 1079120 homB fragment 3 4176878 homB fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664997.1 1078986 D 382638 CDS YP_664998.1 109947770 4176879 1079186..1079506 1 NC_008229.1 hypothetical protein 1079506 homB fragment 4 4176879 homB fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_664998.1 1079186 D 382638 CDS YP_664999.1 109947771 4177160 complement(1079584..1080135) 1 NC_008229.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1080135 ruvA 4177160 ruvA Helicobacter acinonychis str. Sheeba Holliday junction DNA helicase RuvA YP_664999.1 1079584 R 382638 CDS YP_665000.1 109947772 4176263 complement(1080166..1082001) 1 NC_008229.1 hypothetical protein 1082001 4176263 Hac_1249 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665000.1 1080166 R 382638 CDS YP_665001.1 109947773 4177660 1082095..1083555 1 NC_008229.1 (O25551) Virulence factor mviN homolog; High confidence in function and specificity; virulence factor MviN 1083555 mviN 4177660 mviN Helicobacter acinonychis str. Sheeba virulence factor MviN YP_665001.1 1082095 D 382638 CDS YP_665002.1 109947774 4176397 1083556..1084953 1 NC_008229.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1084953 cysS 4176397 cysS Helicobacter acinonychis str. Sheeba cysteinyl-tRNA synthetase YP_665002.1 1083556 D 382638 CDS YP_665003.1 109947775 4176615 1085315..1085509 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin vacA fragment 1 1085509 vacA fragment 1 4176615 vacA fragment 1 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 1 YP_665003.1 1085315 D 382638 CDS YP_665004.1 109947776 4176620 1085576..1085866 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin vacA fragment 2 1085866 vacA fragment 2 4176620 vacA fragment 2 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 2 YP_665004.1 1085576 D 382638 CDS YP_665005.1 109947777 4176621 1085841..1086053 1 NC_008229.1 (Q48258) Vacuolating cytotoxin precursor; Conserved hypothetical protein; vacuolating cytotoxin vacA fragment 3 1086053 vacA fragment 3 4176621 vacA fragment 3 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 3 YP_665005.1 1085841 D 382638 CDS YP_665006.1 109947778 4176622 1086075..1086191 1 NC_008229.1 (P55981) Vacuolating cytotoxin precursor; hypothetical protein; vacuolating cytotoxin vacA fragment 4 1086191 vacA fragment 4 4176622 vacA fragment 4 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 4 YP_665006.1 1086075 D 382638 CDS YP_665007.1 109947779 4176623 1086204..1086419 1 NC_008229.1 (Q9ZKW5) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin vacA fragment 5 1086419 vacA fragment 5 4176623 vacA fragment 5 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 5 YP_665007.1 1086204 D 382638 CDS YP_665008.1 109947780 4176624 1086489..1086767 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin vacA fragment 6 1086767 vacA fragment 6 4176624 vacA fragment 6 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 6 YP_665008.1 1086489 D 382638 CDS YP_665009.1 109947781 4176625 1086971..1087501 1 NC_008229.1 (Q48247) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin vacA fragment 7 1087501 vacA fragment 7 4176625 vacA fragment 7 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 7 YP_665009.1 1086971 D 382638 CDS YP_665010.1 109947782 4176626 1087518..1087838 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin VacA fragment 8 1087838 vacA fragment 8 4176626 vacA fragment 8 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin VacA fragment 8 YP_665010.1 1087518 D 382638 CDS YP_665011.1 109947783 4176627 1087984..1088106 1 NC_008229.1 vacuolating cytotoxin vacA fragment 9 1088106 vacA fragment 9 4176627 vacA fragment 9 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 9 YP_665011.1 1087984 D 382638 CDS YP_665012.1 109947784 4176616 1088177..1088449 1 NC_008229.1 (Q48258) Vacuolating cytotoxin precursor, inactive; High confidence in function and specificity; vacuolating cytotoxin VacA fragment 10 1088449 vacA fragment 10 4176616 vacA fragment 10 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin VacA fragment 10 YP_665012.1 1088177 D 382638 CDS YP_665013.1 109947785 4176617 1088465..1088665 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin vacA fragment 11 1088665 vacA fragment 11 4176617 vacA fragment 11 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin vacA fragment 11 YP_665013.1 1088465 D 382638 CDS YP_665014.1 109947786 4176618 1088690..1088824 1 NC_008229.1 (Q48258) Vacuolating cytotoxin precursor; hypothetical protein; vacuolating cytotoxin VacA fragment 12 1088824 vacA fragment 12 4176618 vacA fragment 12 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin VacA fragment 12 YP_665014.1 1088690 D 382638 CDS YP_665015.1 109947787 4176619 1088911..1089129 1 NC_008229.1 (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity; vacuolating cytotoxin VacA fragment13 1089129 vacA fragment 13 4176619 vacA fragment 13 Helicobacter acinonychis str. Sheeba vacuolating cytotoxin VacA fragment13 YP_665015.1 1088911 D 382638 CDS YP_665016.1 109947788 4176903 complement(1089591..1090778) 1 NC_008229.1 High confidence in function and specificity; bifunctional alpha-2,3/-2,8-sialyltransferase 1090778 cst 4176903 cst Helicobacter acinonychis str. Sheeba bifunctional alpha-2,3/-2,8-sialyltransferase YP_665016.1 1089591 R 382638 CDS YP_665017.1 109947789 4176904 complement(1090775..1092043) 1 NC_008229.1 Specificity unclear; bifunctional alpha-2,3/-2,8-sialyltransferase 1092043 cst 4176904 cst Helicobacter acinonychis str. Sheeba bifunctional alpha-2,3/-2,8-sialyltransferase YP_665017.1 1090775 R 382638 CDS YP_665018.1 109947790 4177439 complement(1092030..1092689) 1 NC_008229.1 (Q9AFG9) Acylneuraminate cytidylyltransferase (EC 2.7.7.43) (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) (CMP-sialic acid synthetase); High confidence in function and specificity; N-acylneuraminate cytidylyltransferase 1092689 neuA 4177439 neuA Helicobacter acinonychis str. Sheeba N-acylneuraminate cytidylyltransferase YP_665018.1 1092030 R 382638 CDS YP_665019.1 109947791 4177443 complement(1092686..1093927) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 1093927 neuC 4177443 neuC Helicobacter acinonychis str. Sheeba hypothetical protein YP_665019.1 1092686 R 382638 CDS YP_665020.1 109947792 4177442 complement(1093937..1094974) 1 NC_008229.1 (Q9NR45) Sialic acid synthase (N-acetylneuraminate synthase) (EC 2.5.1.56) (N-acetylneuraminic acid synthase) (N-acetylneuraminate-9-phosphate synthase) (EC 2.5.1.57) (N-acetylneuraminic acid phosphate synthase); High confidence in function and specificity; N-acetylneuraminic acid synthetase 1094974 neuB 4177442 neuB Helicobacter acinonychis str. Sheeba N-acetylneuraminic acid synthetase YP_665020.1 1093937 R 382638 CDS YP_665021.1 109947793 4176815 complement(1095108..1095875) 1 NC_008229.1 (O05732) Probable iron chelatin transport ATP-binding protein HP0888; High confidence in function and specificity; iron(III) dicitrate transporter ATP-binding protein 1095875 fecE 4176815 fecE Helicobacter acinonychis str. Sheeba iron(III) dicitrate transporter ATP-binding protein YP_665021.1 1095108 R 382638 CDS YP_665022.1 109947794 4176814 complement(1095875..1096855) 1 NC_008229.1 (O05731) Probable iron chelatin transport system permease HP0889; High confidence in function and specificity; iron(III) ABC transporter permease 1096855 fecD 4176814 fecD Helicobacter acinonychis str. Sheeba iron(III) ABC transporter permease YP_665022.1 1095875 R 382638 CDS YP_665023.1 109947795 4176632 complement(1096855..1097691) 1 NC_008229.1 (Q9ZKW1) Probable short-chain type dehydrogenase/reductase vdlC (EC 1.-.-.-); High confidence in function and specificity; short chain dehydrogenase/reductase family oxidoreductase 1097691 vdlC 4176632 vdlC Helicobacter acinonychis str. Sheeba short chain dehydrogenase/reductase family oxidoreductase YP_665023.1 1096855 R 382638 CDS YP_665024.1 109947796 4176264 1097831..1098352 1 NC_008229.1 (O05729) Protein vdlD; High confidence in function and specificity; acyl-CoA hydrolase 1098352 4176264 Hac_1275 Helicobacter acinonychis str. Sheeba acyl-CoA hydrolase YP_665024.1 1097831 D 382638 CDS YP_665025.1 109947797 4176265 complement(1098674..1099039) 1 NC_008229.1 hypothetical protein 1099039 4176265 Hac_1276 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665025.1 1098674 R 382638 CDS YP_665026.1 109947798 4176489 complement(1099609..1099839) 1 NC_008229.1 hypothetical protein 1099839 omp20 fragment 2 4176489 omp20 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665026.1 1099609 R 382638 CDS YP_665027.1 109947799 4176488 complement(1100455..1100892) 1 NC_008229.1 hypothetical protein 1100892 omp20 fragment 1 4176488 omp20 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665027.1 1100455 R 382638 CDS YP_665028.1 109947800 4176266 1101636..1102157 1 NC_008229.1 hypothetical protein 1102157 4176266 Hac_1285 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665028.1 1101636 D 382638 CDS YP_665029.1 109947801 4177671 complement(1102108..1103220) 1 NC_008229.1 (P31904) Hydrogenase expression/formation protein hypD2; High confidence in function and specificity; hydrogenase expression/formation protein 1103220 hypD 4177671 hypD Helicobacter acinonychis str. Sheeba hydrogenase expression/formation protein YP_665029.1 1102108 R 382638 CDS YP_665030.1 109947802 4177670 complement(1103226..1103462) 1 NC_008229.1 (P31900) Hydrogenase expression/formation protein hypC; Function unclear; hydrogenase expression/formation protein 1103462 hypC 4177670 hypC Helicobacter acinonychis str. Sheeba hydrogenase expression/formation protein YP_665030.1 1103226 R 382638 CDS YP_665031.1 109947803 4177552 complement(1103462..1104190) 1 NC_008229.1 (Q9ZKU8) Hydrogenase/urease nickel incorporation protein hypB; High confidence in function and specificity; hydrogenase expression/formation protein 1104190 hypB 4177552 hypB Helicobacter acinonychis str. Sheeba hydrogenase expression/formation protein YP_665031.1 1103462 R 382638 CDS YP_665032.1 109947804 4177694 complement(1104466..1105668) 1 NC_008229.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1105668 ackA 4177694 ackA Helicobacter acinonychis str. Sheeba acetate kinase YP_665032.1 1104466 R 382638 CDS YP_665033.1 109947805 4177739 complement(1105678..1107201) 1 NC_008229.1 (Q9ZKU4) Phosphate acetyltransferase (EC 2.3.1.8) (Phosphotransacetylase); High confidence in function and specificity; phosphate acetyltransferase 1107201 pta 4177739 pta Helicobacter acinonychis str. Sheeba phosphate acetyltransferase YP_665033.1 1105678 R 382638 CDS YP_665034.1 109947806 4176267 1107578..1109137 1 NC_008229.1 hypothetical protein 1109137 4176267 Hac_1293 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665034.1 1107578 D 382638 CDS YP_665035.1 109947807 4177243 1109188..1110066 1 NC_008229.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 1110066 flgD 4177243 flgD Helicobacter acinonychis str. Sheeba flagellar basal body rod modification protein YP_665035.1 1109188 D 382638 CDS YP_665036.1 109947808 4177245 1110063..1111880 1 NC_008229.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1111880 flgE 4177245 flgE Helicobacter acinonychis str. Sheeba flagellar hook protein FlgE YP_665036.1 1110063 D 382638 CDS YP_665037.1 109947809 4176268 1111937..1112560 1 NC_008229.1 restriction endonuclease 1112560 4176268 Hac_1296 Helicobacter acinonychis str. Sheeba restriction endonuclease YP_665037.1 1111937 D 382638 CDS YP_665038.1 109947810 4177432 1112553..1113686 1 NC_008229.1 (P43423) Modification methylase BseCI (EC 2.1.1.72) (Adenine-specific methyltransferase BseCI) (M.BseCI); High confidence in function and specificity; site specific DNA-methyltransferase 1113686 HINDIIM 4177432 HINDIIM Helicobacter acinonychis str. Sheeba site specific DNA-methyltransferase YP_665038.1 1112553 D 382638 CDS YP_665039.1 109947811 4177073 1113695..1115713 1 NC_008229.1 High confidence in function and specificity; ATP-dependent DNA helicase 1115713 rep 4177073 rep Helicobacter acinonychis str. Sheeba ATP-dependent DNA helicase YP_665039.1 1113695 D 382638 CDS YP_665040.1 109947812 4176490 1116704..1118254 1 NC_008229.1 outer membrane protein 21 1118254 omp21 4176490 omp21 Helicobacter acinonychis str. Sheeba outer membrane protein 21 YP_665040.1 1116704 D 382638 CDS YP_665041.1 109947813 4176570 1118276..1119772 1 NC_008229.1 outer membrane protein 22 1119772 omp22 4176570 omp22 Helicobacter acinonychis str. Sheeba outer membrane protein 22 YP_665041.1 1118276 D 382638 CDS YP_665042.1 109947814 4176812 complement(1120003..1122528) 1 NC_008229.1 (P13036) Iron(III) dicitrate transport protein fecA precursor; High confidence in function and specificity; iron(III) dicitrate transport protein 1122528 fecA 4176812 fecA Helicobacter acinonychis str. Sheeba iron(III) dicitrate transport protein YP_665042.1 1120003 R 382638 CDS YP_665043.1 109947815 4176571 1122691..1122930 1 NC_008229.1 Outer membrane protein ,fecA inserted, fragment; hypothetical protein; outer membrane protein 23 1122930 omp23 4176571 omp23 Helicobacter acinonychis str. Sheeba outer membrane protein 23 YP_665043.1 1122691 D 382638 CDS YP_665044.1 109947816 4177711 complement(1123021..1123716) 1 NC_008229.1 ABC-type Amino-acid transport system, permease component.; High confidence in function and specificity; amino acid ABC transporter permease 1123716 yckJ 4177711 yckJ Helicobacter acinonychis str. Sheeba amino acid ABC transporter permease YP_665044.1 1123021 R 382638 CDS YP_665045.1 109947817 4177712 complement(1123718..1124491) 1 NC_008229.1 High confidence in function and specificity; polar amino acid ABC transporter periplasmic protein 1124491 yckK 4177712 yckK Helicobacter acinonychis str. Sheeba polar amino acid ABC transporter periplasmic protein YP_665045.1 1123718 R 382638 CDS YP_665046.1 109947818 4176269 complement(1124850..1125203) 1 NC_008229.1 Homologous to H. pylori gene product HP0947,jhp0881; hypothetical protein; hypothetical protein 1125203 4176269 Hac_1307 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665046.1 1124850 R 382638 CDS YP_665047.1 109947819 4176270 complement(1125689..1127179) 1 NC_008229.1 Conserved hypothetical protein; hypothetical protein 1127179 4176270 Hac_1309 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665047.1 1125689 R 382638 CDS YP_665048.1 109947820 4176271 1128508..1128885 1 NC_008229.1 Conserved hypothetical protein; Conserved hypothetical protein; hypothetical protein 1128885 4176271 Hac_1310 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665048.1 1128508 D 382638 CDS YP_665049.1 109947821 4176399 1128908..1130140 1 NC_008229.1 High confidence in function and specificity; D-amino acid dehydrogenase subunit 1130140 dadA 4176399 dadA Helicobacter acinonychis str. Sheeba D-amino acid dehydrogenase subunit YP_665049.1 1128908 D 382638 CDS YP_665050.1 109947822 4176400 1130184..1131536 1 NC_008229.1 sodium/ alanine symporter; High confidence in function and specificity; amino acid transporter 1131536 dagA 4176400 dagA Helicobacter acinonychis str. Sheeba amino acid transporter YP_665050.1 1130184 D 382638 CDS YP_665051.1 109947823 4176272 1131544..1132677 1 NC_008229.1 (Q9ZKQ9) Alanine racemase (EC 5.1.1.1); High confidence in function and specificity; hypothetical protein 1132677 4176272 Hac_1313 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665051.1 1131544 D 382638 CDS YP_665052.1 109947824 4176850 complement(1133190..1133546) 1 NC_008229.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1133546 rplS 4176850 rplS Helicobacter acinonychis str. Sheeba 50S ribosomal protein L19 YP_665052.1 1133190 R 382638 CDS YP_665053.1 109947825 4177489 complement(1133568..1134242) 1 NC_008229.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1134242 trmD 4177489 trmD Helicobacter acinonychis str. Sheeba tRNA (guanine-N(1)-)-methyltransferase YP_665053.1 1133568 R 382638 CDS YP_665054.1 109947826 4177091 complement(1134258..1134800) 1 NC_008229.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1134800 rimM 4177091 rimM Helicobacter acinonychis str. Sheeba 16S rRNA-processing protein RimM YP_665054.1 1134258 R 382638 CDS YP_665055.1 109947827 4176273 complement(1134808..1135161) 1 NC_008229.1 Conserved hypothetical protein; hypothetical protein 1135161 4176273 Hac_1317 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665055.1 1134808 R 382638 CDS YP_665056.1 109947828 4177155 complement(1135177..1135407) 1 NC_008229.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1135407 rpsP 4177155 rpsP Helicobacter acinonychis str. Sheeba 30S ribosomal protein S16 YP_665056.1 1135177 R 382638 CDS YP_665057.1 109947829 4176818 complement(1135479..1136825) 1 NC_008229.1 (Q9ZK62) Signal recognition particle protein (Fifty-four homolog); High confidence in function and specificity; signal recognition particle protein 1136825 ffh 4176818 ffh Helicobacter acinonychis str. Sheeba signal recognition particle protein YP_665057.1 1135479 R 382638 CDS YP_665058.1 109947830 4176630 complement(1136841..1139459) 1 NC_008229.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1139459 valS 4176630 valS Helicobacter acinonychis str. Sheeba valyl-tRNA synthetase YP_665058.1 1136841 R 382638 CDS YP_665059.1 109947831 4176274 1139584..1139991 1 NC_008229.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1139991 4176274 Hac_1321 Helicobacter acinonychis str. Sheeba flagellar assembly protein FliW YP_665059.1 1139584 D 382638 CDS YP_665060.1 109947832 4177656 1140001..1141062 1 NC_008229.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1141062 murG 4177656 murG Helicobacter acinonychis str. Sheeba undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_665060.1 1140001 D 382638 CDS YP_665061.1 109947833 4176572 1141172..1143211 1 NC_008229.1 Conserved hypothetical protein; outer membrane protein 24 1143211 omp24 4176572 omp24 Helicobacter acinonychis str. Sheeba outer membrane protein 24 YP_665061.1 1141172 D 382638 CDS YP_665062.1 109947834 4176573 1143233..1146958 1 NC_008229.1 Conserved hypothetical protein; outer membrane protein 25 1146958 omp25 4176573 omp25 Helicobacter acinonychis str. Sheeba outer membrane protein 25 YP_665062.1 1143233 D 382638 CDS YP_665063.1 109947835 4176563 1146972..1147745 1 NC_008229.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1147745 proC 4176563 proC Helicobacter acinonychis str. Sheeba pyrroline-5-carboxylate reductase YP_665063.1 1146972 D 382638 CDS YP_665064.1 109947836 4176819 1147776..1148309 1 NC_008229.1 High confidence in function and specificity; cell filamentation protein Fic 1148309 fic 4176819 fic Helicobacter acinonychis str. Sheeba cell filamentation protein Fic YP_665064.1 1147776 D 382638 CDS YP_665065.1 109947837 4176275 complement(1148394..1148816) 1 NC_008229.1 Conserved hypothetical protein; metalloprotease 1148816 4176275 Hac_1327 Helicobacter acinonychis str. Sheeba metalloprotease YP_665065.1 1148394 R 382638 CDS YP_665066.1 109947838 4177239 complement(1148883..1149377) 1 NC_008229.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1149377 fldA 4177239 fldA Helicobacter acinonychis str. Sheeba flavodoxin FldA YP_665066.1 1148883 R 382638 CDS YP_665067.1 109947839 4176276 complement(1149480..1150061) 1 NC_008229.1 Conserved hypothetical integral membrane protein; Function unclear; hypothetical protein 1150061 4176276 Hac_1329 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665067.1 1149480 R 382638 CDS YP_665068.1 109947840 4176791 1150195..1150392 1 NC_008229.1 Probable Nitrogen fixation protein fixS; Function unclear; hypothetical protein 1150392 4176791 Hac_1330 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665068.1 1150195 D 382638 CDS YP_665069.1 109947841 4176674 1150403..1151374 1 NC_008229.1 (P52214) Thioredoxin reductase (EC 1.8.1.9) (TRXR) (TR); High confidence in function and specificity; thioredoxin reductase 1151374 trxB 4176674 trxB Helicobacter acinonychis str. Sheeba thioredoxin reductase YP_665069.1 1150403 D 382638 CDS YP_665070.1 109947842 4176749 complement(1151626..1151862) 1 NC_008229.1 permease of Major facilitator Superfamily.; hypothetical protein; hypothetical protein 1151862 permease fragment 4 4176749 permease fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665070.1 1151626 R 382638 CDS YP_665071.1 109947843 4176748 complement(1151831..1152154) 1 NC_008229.1 Function unclear; hypothetical protein 1152154 permease fragment 3 4176748 permease fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665071.1 1151831 R 382638 CDS YP_665072.1 109947844 4177573 1152699..1153268 1 NC_008229.1 Function unclear; integrase 1153268 Hac prophage I orf1 4177573 Hac prophage I orf1 Helicobacter acinonychis str. Sheeba integrase YP_665072.1 1152699 D 382638 CDS YP_665073.1 109947845 4177574 complement(1153745..1155343) 1 NC_008229.1 Function unclear; helicase 1155343 Hac prophage I orf2 4177574 Hac prophage I orf2 Helicobacter acinonychis str. Sheeba helicase YP_665073.1 1153745 R 382638 CDS YP_665074.1 109947846 4177575 complement(1155450..1158692) 1 NC_008229.1 Conserved hypothetical protein; helicase 1158692 Hac prophage I orf3 4177575 Hac prophage I orf3 Helicobacter acinonychis str. Sheeba helicase YP_665074.1 1155450 R 382638 CDS YP_665075.1 109947847 4177576 complement(1159373..1159579) 1 NC_008229.1 Probable tautomerase; Conserved hypothetical protein; tautomerase 1159579 Hac prophage I orf4 4177576 Hac prophage I orf4 Helicobacter acinonychis str. Sheeba tautomerase YP_665075.1 1159373 R 382638 CDS YP_665076.1 109947848 4177577 complement(1159916..1160125) 1 NC_008229.1 DNA repair and recombination protein.; Conserved hypothetical protein; hypothetical protein 1160125 Hac prophage I orf5 4177577 Hac prophage I orf5 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665076.1 1159916 R 382638 CDS YP_665077.1 109947849 4177578 complement(1160336..1160602) 1 NC_008229.1 hypothetical protein 1160602 Hac prophage I orf6 4177578 Hac prophage I orf6 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665077.1 1160336 R 382638 CDS YP_665078.1 109947850 4177579 complement(1161236..1161766) 1 NC_008229.1 Specificity unclear; hypothetical protein 1161766 Hac prophage I orf7 4177579 Hac prophage I orf7 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665078.1 1161236 R 382638 CDS YP_665079.1 109947851 4177580 complement(1163269..1163655) 1 NC_008229.1 hypothetical protein 1163655 Hac prophage I orf8 4177580 Hac prophage I orf8 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665079.1 1163269 R 382638 CDS YP_665080.1 109947852 4177581 complement(1163911..1164390) 1 NC_008229.1 hypothetical protein 1164390 Hac prophage I orf9 4177581 Hac prophage I orf9 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665080.1 1163911 R 382638 CDS YP_665081.1 109947853 4176747 complement(1164696..1165070) 1 NC_008229.1 Function unclear; hypothetical protein 1165070 permease fragment 2 4176747 permease fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665081.1 1164696 R 382638 CDS YP_665082.1 109947854 4176746 complement(1165197..1165355) 1 NC_008229.1 Function unclear; hypothetical protein 1165355 permease fragment 1 4176746 permease fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665082.1 1165197 R 382638 CDS YP_665083.1 109947855 4176772 1165417..1167054 1 NC_008229.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1167054 pgi 4176772 pgi Helicobacter acinonychis str. Sheeba glucose-6-phosphate isomerase YP_665083.1 1165417 D 382638 CDS YP_665084.1 109947856 4176792 1167071..1167685 1 NC_008229.1 hypothetical protein 1167685 4176792 Hac_1347 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665084.1 1167071 D 382638 CDS YP_665085.1 109947857 4176793 1167696..1168841 1 NC_008229.1 (P12364) Type III restriction-modification system EcoP15I enzyme mod (EC 2.1.1.72) (EcoP15I methyltransferase) (M.EcoP15I); High confidence in function and specificity; type II restriction-modification methyltransferase 1168841 4176793 Hac_1348 Helicobacter acinonychis str. Sheeba type II restriction-modification methyltransferase YP_665085.1 1167696 D 382638 CDS YP_665086.1 109947858 4176641 complement(1168879..1170141) 1 NC_008229.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1170141 xseA 4176641 xseA Helicobacter acinonychis str. Sheeba exodeoxyribonuclease VII large subunit YP_665086.1 1168879 R 382638 CDS YP_665087.1 109947859 4176794 complement(1170154..1171197) 1 NC_008229.1 Specificity unclear; zinc metalloprotease 1171197 4176794 Hac_1350 Helicobacter acinonychis str. Sheeba zinc metalloprotease YP_665087.1 1170154 R 382638 CDS YP_665088.1 109947860 4176795 complement(1171197..1171877) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 1171877 4176795 Hac_1351 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665088.1 1171197 R 382638 CDS YP_665089.1 109947861 4176796 complement(1171870..1172298) 1 NC_008229.1 hypothetical protein 1172298 4176796 Hac_1352 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665089.1 1171870 R 382638 CDS YP_665090.1 109947862 4177742 complement(1172295..1173530) 1 NC_008229.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1173530 purA 4177742 purA Helicobacter acinonychis str. Sheeba adenylosuccinate synthetase YP_665090.1 1172295 R 382638 CDS YP_665091.1 109947863 4176574 complement(1173606..1175021) 1 NC_008229.1 outer membrane protein 26 1175021 omp26 4176574 omp26 Helicobacter acinonychis str. Sheeba outer membrane protein 26 YP_665091.1 1173606 R 382638 CDS YP_665092.1 109947864 4176575 complement(1175034..1176449) 1 NC_008229.1 outer membrane protein 27 1176449 omp27 4176575 omp27 Helicobacter acinonychis str. Sheeba outer membrane protein 27 YP_665092.1 1175034 R 382638 CDS YP_665093.1 109947865 4177323 1176856..1176996 1 NC_008229.1 peptide ABC transporter permease oppC fragment 1 1176996 oppC fragment 1 4177323 oppC fragment 1 Helicobacter acinonychis str. Sheeba peptide ABC transporter permease oppC fragment 1 YP_665093.1 1176856 D 382638 CDS YP_665094.1 109947866 4177324 1177009..1177254 1 NC_008229.1 ABC transporter permease; High confidence in function and specificity; peptide ABC transporter permease oppC fragment 2 1177254 oppC fragment 2 4177324 oppC fragment 2 Helicobacter acinonychis str. Sheeba peptide ABC transporter permease oppC fragment 2 YP_665094.1 1177009 D 382638 CDS YP_665095.1 109947867 4177325 1177278..1177466 1 NC_008229.1 ABC-type peptide transport, permease component; Function unclear; peptide ABC transporter permease oppC fragment 3 1177466 oppC fragment 3 4177325 oppC fragment 3 Helicobacter acinonychis str. Sheeba peptide ABC transporter permease oppC fragment 3 YP_665095.1 1177278 D 382638 CDS YP_665096.1 109947868 4177326 1177430..1177657 1 NC_008229.1 ABC transporter permease; Function unclear; peptide ABC transporter permease oppC fragment 3 1177657 oppC fragment 4 4177326 oppC fragment 4 Helicobacter acinonychis str. Sheeba peptide ABC transporter permease oppC fragment 3 YP_665096.1 1177430 D 382638 CDS YP_665097.1 109947869 4177327 1177657..1177818 1 NC_008229.1 ABC-type peptide transport, permease component; Function unclear; peptide ABC transporter permease oppC fragment 5 1177818 oppC fragment 5 4177327 oppC fragment 5 Helicobacter acinonychis str. Sheeba peptide ABC transporter permease oppC fragment 5 YP_665097.1 1177657 D 382638 CDS YP_665098.1 109947870 4177328 1177833..1178177 1 NC_008229.1 Peptide transport ATP-binding protein; High confidence in function and specificity; peptide ABC transporter ATP-binding protein oppD fragment 1 1178177 oppD fragment 1 4177328 oppD fragment 1 Helicobacter acinonychis str. Sheeba peptide ABC transporter ATP-binding protein oppD fragment 1 YP_665098.1 1177833 D 382638 CDS YP_665099.1 109947871 4177329 1178120..1178416 1 NC_008229.1 Probable ABC-type transport system, ATPase component.; hypothetical protein; peptide ABC transporter ATP-binding protein oppD fragment 2 1178416 oppD fragment 2 4177329 oppD fragment 2 Helicobacter acinonychis str. Sheeba peptide ABC transporter ATP-binding protein oppD fragment 2 YP_665099.1 1178120 D 382638 CDS YP_665100.1 109947872 4177330 1178519..1178839 1 NC_008229.1 (P33916) Hypothetical ABC transporter ATP-binding protein yejF; hypothetical protein; peptide ABC transporter ATP-binding protein oppD fragment 3 1178839 oppD fragment 3 4177330 oppD fragment 3 Helicobacter acinonychis str. Sheeba peptide ABC transporter ATP-binding protein oppD fragment 3 YP_665100.1 1178519 D 382638 CDS YP_665101.1 109947873 4177331 1178840..1179199 1 NC_008229.1 (P24137) Oligopeptide transport ATP-binding protein oppF; High confidence in function and specificity; peptide ABC transporter ATP-binding protein oppD fragment 4 1179199 oppD fragment 4 4177331 oppD fragment 4 Helicobacter acinonychis str. Sheeba peptide ABC transporter ATP-binding protein oppD fragment 4 YP_665101.1 1178840 D 382638 CDS YP_665102.1 109947874 4176797 complement(1179348..1179887) 1 NC_008229.1 hypothetical protein 1179887 4176797 Hac_1368 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665102.1 1179348 R 382638 CDS YP_665103.1 109947875 4176798 complement(1179894..1180988) 1 NC_008229.1 Function unclear; hypothetical protein 1180988 4176798 Hac_1369 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665103.1 1179894 R 382638 CDS YP_665104.1 109947876 4177123 complement(1181007..1182491) 1 NC_008229.1 High confidence in function and specificity; ATP-dependent RNA helicase 1182491 deaD 4177123 deaD Helicobacter acinonychis str. Sheeba ATP-dependent RNA helicase YP_665104.1 1181007 R 382638 CDS YP_665105.1 109947877 4177249 1182666..1183691 1 NC_008229.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1183691 flgI 4177249 flgI Helicobacter acinonychis str. Sheeba flagellar basal body P-ring protein YP_665105.1 1182666 D 382638 CDS YP_665106.1 109947878 4176799 1183688..1184005 1 NC_008229.1 Specificity unclear; hypothetical protein 1184005 4176799 Hac_1372 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665106.1 1183688 D 382638 CDS YP_665107.1 109947879 4177101 1184002..1185129 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 1185129 atoS 4177101 atoS Helicobacter acinonychis str. Sheeba hypothetical protein YP_665107.1 1184002 D 382638 CDS YP_665108.1 109947880 4177667 1185522..1185956 1 NC_008229.1 High confidence in function and specificity; neutrophil-activating protein A 1185956 napA 4177667 napA Helicobacter acinonychis str. Sheeba neutrophil-activating protein A YP_665108.1 1185522 D 382638 CDS YP_665109.1 109947881 4176800 1185974..1186258 1 NC_008229.1 (Q55790) Hypothetical protein slr0074; hypothetical protein; hypothetical protein 1186258 4176800 Hac_1376 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665109.1 1185974 D 382638 CDS YP_665110.1 109947882 4176801 1186275..1186646 1 NC_008229.1 hypothetical protein 1186646 4176801 Hac_1377 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665110.1 1186275 D 382638 CDS YP_665111.1 109947883 4176129 1186656..1187579 1 NC_008229.1 Bifunctional short chain isoprenyl diphosphate synthase [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltransferase); Geranyltranstransferase (EC 2.5.1.10)]; High confidence in function and specificity; octaprenyl-diphosphate synthase 1187579 ispB 4176129 ispB Helicobacter acinonychis str. Sheeba octaprenyl-diphosphate synthase YP_665111.1 1186656 D 382638 CDS YP_665112.1 109947884 4177421 1187579..1188922 1 NC_008229.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1188922 hemA 4177421 hemA Helicobacter acinonychis str. Sheeba glutamyl-tRNA reductase YP_665112.1 1187579 D 382638 CDS YP_665113.1 109947885 4176564 1188926..1190659 1 NC_008229.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1190659 proS 4176564 proS Helicobacter acinonychis str. Sheeba prolyl-tRNA synthetase YP_665113.1 1188926 D 382638 CDS YP_665114.1 109947886 4177423 1190670..1191590 1 NC_008229.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1191590 hemC 4177423 hemC Helicobacter acinonychis str. Sheeba porphobilinogen deaminase YP_665114.1 1190670 D 382638 CDS YP_665115.1 109947887 4176802 1191590..1191955 1 NC_008229.1 hypothetical protein 1191955 4176802 Hac_1382 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665115.1 1191590 D 382638 CDS YP_665116.1 109947888 4176803 1192063..1193124 1 NC_008229.1 Specificity unclear; hypothetical protein 1193124 4176803 Hac_1383 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665116.1 1192063 D 382638 CDS YP_665117.1 109947889 4176804 1193240..1193437 1 NC_008229.1 hypothetical protein 1193437 4176804 Hac_1385 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665117.1 1193240 D 382638 CDS YP_665118.1 109947890 4176576 1193541..1194152 1 NC_008229.1 hypothetical protein 1194152 omp28 fragment 1 4176576 omp28 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665118.1 1193541 D 382638 CDS YP_665119.1 109947891 4176577 1194225..1194584 1 NC_008229.1 hypothetical protein 1194584 omp28 fragment 2 4176577 omp28 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665119.1 1194225 D 382638 CDS YP_665120.1 109947892 4176578 1194569..1194961 1 NC_008229.1 hypothetical protein 1194961 omp28 fragment 3 4176578 omp28 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665120.1 1194569 D 382638 CDS YP_665121.1 109947893 4176579 1195040..1195294 1 NC_008229.1 hypothetical protein 1195294 omp28 fragment 4 4176579 omp28 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665121.1 1195040 D 382638 CDS YP_665122.1 109947894 4176805 1195464..1195688 1 NC_008229.1 hypothetical protein 1195688 4176805 Hac_1390 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665122.1 1195464 D 382638 CDS YP_665123.1 109947895 4176806 1196228..1196587 1 NC_008229.1 ABC-type cobalt transport system, ATP-binding protein; Function unclear; multidrug ABC transporter, ATPase component 1196587 4176806 Hac_1391 Helicobacter acinonychis str. Sheeba multidrug ABC transporter, ATPase component YP_665123.1 1196228 D 382638 CDS YP_665124.1 109947896 4176807 1196587..1197195 1 NC_008229.1 Conserved hypothetical protein; multidrug ABC transporter permease 1197195 4176807 Hac_1392 Helicobacter acinonychis str. Sheeba multidrug ABC transporter permease YP_665124.1 1196587 D 382638 CDS YP_665125.1 109947897 4176628 complement(1197386..1207036) 1 NC_008229.1 vacuolating cytotoxin precursor; Specificity unclear; vacuolating cytotoxin VacA 1207036 vacA paralog 4176628 vacA paralog Helicobacter acinonychis str. Sheeba vacuolating cytotoxin VacA YP_665125.1 1197386 R 382638 CDS YP_665126.1 109947898 4176808 complement(1207198..1207767) 1 NC_008229.1 hypothetical protein 1207767 4176808 Hac_1394 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665126.1 1207198 R 382638 CDS YP_665127.1 109947899 4177698 complement(1207764..1210850) 1 NC_008229.1 AcrB/AcrD/AcrF family protein; High confidence in function and specificity; cation/multidrug efflux pump protein 1210850 acrB 4177698 acrB Helicobacter acinonychis str. Sheeba cation/multidrug efflux pump protein YP_665127.1 1207764 R 382638 CDS YP_665128.1 109947900 4176809 complement(1210863..1211567) 1 NC_008229.1 Probable membrane-fusion protein; Function unclear; hypothetical protein 1211567 4176809 Hac_1396 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665128.1 1210863 R 382638 CDS YP_665129.1 109947901 4177486 complement(1211581..1213014) 1 NC_008229.1 Outer membrane protein precursor; Function unclear; hypothetical protein 1213014 tolC 4177486 tolC Helicobacter acinonychis str. Sheeba hypothetical protein YP_665129.1 1211581 R 382638 CDS YP_665130.1 109947902 4177425 complement(1213027..1214046) 1 NC_008229.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1214046 hemE 4177425 hemE Helicobacter acinonychis str. Sheeba uroporphyrinogen decarboxylase YP_665130.1 1213027 R 382638 CDS YP_665131.1 109947903 4177299 complement(1214172..1214729) 1 NC_008229.1 hypothetical protein 1214729 4177299 Hac_1400 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665131.1 1214172 R 382638 CDS YP_665132.1 109947904 4177300 complement(1214726..1215382) 1 NC_008229.1 High confidence in function and specificity; 3-methyladenine DNA glycosylase 1215382 4177300 Hac_1401 Helicobacter acinonychis str. Sheeba 3-methyladenine DNA glycosylase YP_665132.1 1214726 R 382638 CDS YP_665133.1 109947905 4176824 complement(1215794..1217326) 1 NC_008229.1 FlaA; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin A 1217326 flaA 4176824 flaA Helicobacter acinonychis str. Sheeba flagellin A YP_665133.1 1215794 R 382638 CDS YP_665134.1 109947906 4177053 1217701..1217961 1 NC_008229.1 Function unclear; secretion/efflux ABC transporter ATP-binding protein fragment 1 1217961 fragment 1 4177053 fragment 1 Helicobacter acinonychis str. Sheeba secretion/efflux ABC transporter ATP-binding protein fragment 1 YP_665134.1 1217701 D 382638 CDS YP_665135.1 109947907 4177033 1218208..1218309 1 NC_008229.1 secretion/efflux ABC transporter ATP-binding protein fragment 2 1218309 fragment 2 4177033 fragment 2 Helicobacter acinonychis str. Sheeba secretion/efflux ABC transporter ATP-binding protein fragment 2 YP_665135.1 1218208 D 382638 CDS YP_665136.1 109947908 4177292 1218400..1218891 1 NC_008229.1 Multidrug resistance ABC transporter ATP-binding and permease; Function unclear; secretion/efflux ABC transporter ATP-binding protein fragment 3 1218891 fragment 3 4177292 fragment 3 Helicobacter acinonychis str. Sheeba secretion/efflux ABC transporter ATP-binding protein fragment 3 YP_665136.1 1218400 D 382638 CDS YP_665137.1 109947909 4176514 1218961..1219104 1 NC_008229.1 Function unclear; secretion/efflux ABC transporter ATP-binding protein fragment 4 1219104 fragment 4 4176514 fragment 4 Helicobacter acinonychis str. Sheeba secretion/efflux ABC transporter ATP-binding protein fragment 4 YP_665137.1 1218961 D 382638 CDS YP_665138.1 109947910 4176757 1219168..1220469 1 NC_008229.1 High confidence in function and specificity; methyl-accepting chemotaxis protein (MCP) 1220469 mcp 4176757 mcp Helicobacter acinonychis str. Sheeba methyl-accepting chemotaxis protein (MCP) YP_665138.1 1219168 D 382638 CDS YP_665139.1 109947911 4177118 1220483..1221604 1 NC_008229.1 High confidence in function and specificity; 8-amino-7-oxononanoate synthase 1221604 bioF 4177118 bioF Helicobacter acinonychis str. Sheeba 8-amino-7-oxononanoate synthase YP_665139.1 1220483 D 382638 CDS YP_665140.1 109947912 4176738 1221605..1223584 1 NC_008229.1 Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes: Penicillin-insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]; High confidence in function and specificity; penicillin-binding protein 1223584 pbp 4176738 pbp Helicobacter acinonychis str. Sheeba penicillin-binding protein YP_665140.1 1221605 D 382638 CDS YP_665141.2 162139479 4177301 complement(1223587..1224165) 1 NC_008229.1 Tip-alpha; forms a dimer; found in culture supernatant; induces TNF-alpha and NF-kappa-B in cell cultures of mouse cells; tumor necrosis factor alpha-inducing protein 1224165 4177301 Hac_1412 Helicobacter acinonychis str. Sheeba tumor necrosis factor alpha-inducing protein YP_665141.2 1223587 R 382638 CDS YP_665142.1 109947914 4177302 1224325..1224528 1 NC_008229.1 hypothetical protein 1224528 4177302 Hac_1413 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665142.1 1224325 D 382638 CDS YP_665143.1 109947915 4177303 complement(1224640..1226112) 1 NC_008229.1 hypothetical protein 1226112 4177303 Hac_1414 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665143.1 1224640 R 382638 CDS YP_665144.1 109947916 4177304 complement(1226121..1226285) 1 NC_008229.1 hypothetical protein 1226285 4177304 Hac_1415 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665144.1 1226121 R 382638 CDS YP_665145.1 109947917 4176771 complement(1226392..1228236) 1 NC_008229.1 Type III restriction-modification system EcoPI enzyme mod (EC 2.1.1.72) (EcoPI methyltransferase) (M.EcoPI); High confidence in function and specificity; adenine specific DNA methylase 1228236 mod 4176771 mod Helicobacter acinonychis str. Sheeba adenine specific DNA methylase YP_665145.1 1226392 R 382638 CDS YP_665146.1 109947918 4177076 complement(1228253..1231192) 1 NC_008229.1 High confidence in function and specificity; type III restriction enzyme R protein 1231192 res 4177076 res Helicobacter acinonychis str. Sheeba type III restriction enzyme R protein YP_665146.1 1228253 R 382638 CDS YP_665147.1 109947919 4176445 complement(1231341..1231901) 1 NC_008229.1 2-oxoglutarate synthase subunit korC (EC 1.2.7.3) (2-ketoglutarate oxidoreductase gamma chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase gamma subunit); High confidence in function and specificity; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 1231901 oorC 4176445 oorC Helicobacter acinonychis str. Sheeba 2-oxoglutarate-acceptor oxidoreductase subunit OorC YP_665147.1 1231341 R 382638 CDS YP_665148.1 109947920 4176444 complement(1231901..1232722) 1 NC_008229.1 2-oxoglutarate synthase subunit korB (EC 1.2.7.3) (2-ketoglutarate oxidoreductase beta chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase beta subunit); High confidence in function and specificity; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 1232722 oorB 4176444 oorB Helicobacter acinonychis str. Sheeba 2-oxoglutarate-acceptor oxidoreductase subunit OorB YP_665148.1 1231901 R 382638 CDS YP_665149.1 109947921 4176443 complement(1232724..1233851) 1 NC_008229.1 2-oxoglutarate synthase subunit korA (EC 1.2.7.3) (2-ketoglutarate oxidoreductase alpha chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase alpha subunit); High confidence in function and specificity; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 1233851 oorA 4176443 oorA Helicobacter acinonychis str. Sheeba 2-oxoglutarate-acceptor oxidoreductase subunit OorA YP_665149.1 1232724 R 382638 CDS YP_665150.1 109947922 4176446 complement(1233851..1234192) 1 NC_008229.1 NADH-ubiquinone oxidoreductase 23 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I-28.5KD) (CI-28.5KD); High confidence in function and specificity; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 1234192 oorD 4176446 oorD Helicobacter acinonychis str. Sheeba 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_665150.1 1233851 R 382638 CDS YP_665151.1 109947924 4177334 complement(1234372..1235367) 1 NC_008229.1 High confidence in function and specificity; aminodeoxychorismate lyase 1235367 pabC 4177334 pabC Helicobacter acinonychis str. Sheeba aminodeoxychorismate lyase YP_665151.1 1234372 R 382638 CDS YP_665152.1 109947923 4177305 1235285..1238221 1 NC_008229.1 hypothetical protein 1238221 4177305 Hac_1425 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665152.1 1235285 D 382638 CDS YP_665153.1 109947925 4176816 1238218..1238448 1 NC_008229.1 Ferrous iron transport protein A; High confidence in function and specificity; ferrous iron transport protein A 1238448 feoA 4176816 feoA Helicobacter acinonychis str. Sheeba ferrous iron transport protein A YP_665153.1 1238218 D 382638 CDS YP_665154.1 109947926 4177450 1238450..1239100 1 NC_008229.1 Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase); High confidence in function and specificity; endonuclease III 1239100 nth 4177450 nth Helicobacter acinonychis str. Sheeba endonuclease III YP_665154.1 1238450 D 382638 CDS YP_665155.1 109947927 4177502 1239178..1239549 1 NC_008229.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1239549 fliN 4177502 fliN Helicobacter acinonychis str. Sheeba flagellar motor switch protein YP_665155.1 1239178 D 382638 CDS YP_665156.1 109947928 4177306 1239546..1240436 1 NC_008229.1 hypothetical protein 1240436 4177306 Hac_1429 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665156.1 1239546 D 382638 CDS YP_665157.1 109947929 4177307 1240450..1241331 1 NC_008229.1 SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN; Function unclear; hypothetical protein 1241331 4177307 Hac_1430 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665157.1 1240450 D 382638 CDS YP_665158.1 109947930 4177751 1241341..1242360 1 NC_008229.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1242360 pyrC 4177751 pyrC Helicobacter acinonychis str. Sheeba dihydroorotase YP_665158.1 1241341 D 382638 CDS YP_665159.1 109947931 4177308 1242411..1243454 1 NC_008229.1 Predicted neuraminidase (sialidase); Function unclear; neuraminidase (sialidase) 1243454 4177308 Hac_1432 Helicobacter acinonychis str. Sheeba neuraminidase (sialidase) YP_665159.1 1242411 D 382638 CDS YP_665160.1 109947932 4177309 1243460..1244011 1 NC_008229.1 hypothetical protein 1244011 4177309 Hac_1433 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665160.1 1243460 D 382638 CDS YP_665161.1 109947933 4177310 1244017..1246047 1 NC_008229.1 Probable phosphoglycerol transferase; Specificity unclear; hypothetical protein 1246047 4177310 Hac_1434 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665161.1 1244017 D 382638 CDS YP_665162.1 109947934 4177510 1246301..1247179 1 NC_008229.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1247179 folD 4177510 folD Helicobacter acinonychis str. Sheeba bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_665162.1 1246301 D 382638 CDS YP_665163.1 109947935 4177612 1247180..1248052 1 NC_008229.1 Signal peptidase I (EC 3.4.21.89) (SPase I) (Leader peptidase I); High confidence in function and specificity; hypothetical protein 1248052 lepB 4177612 lepB Helicobacter acinonychis str. Sheeba hypothetical protein YP_665163.1 1247180 D 382638 CDS YP_665164.1 109947936 4177311 1248061..1248759 1 NC_008229.1 (O67776) Hypothetical zinc metalloprotease AQ_1964 (EC 3.4.24.-); Function unclear; hypothetical protein 1248759 4177311 Hac_1437 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665164.1 1248061 D 382638 CDS YP_665165.1 109947937 4176832 1248780..1249241 1 NC_008229.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 1249241 rpiB 4176832 rpiB Helicobacter acinonychis str. Sheeba ribose-5-phosphate isomerase B YP_665165.1 1248780 D 382638 CDS YP_665166.1 109947938 4177312 1249287..1249619 1 NC_008229.1 hypothetical protein 1249619 4177312 Hac_1439 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665166.1 1249287 D 382638 CDS YP_665167.1 109947939 4176930 1249654..1250193 1 NC_008229.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1250193 apt 4176930 apt Helicobacter acinonychis str. Sheeba adenine phosphoribosyltransferase YP_665167.1 1249654 D 382638 CDS YP_665168.1 109947940 4177313 1250205..1250783 1 NC_008229.1 Specificity unclear; hypothetical protein 1250783 4177313 Hac_1441 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665168.1 1250205 D 382638 CDS YP_665169.1 109947941 4176744 1250833..1252323 1 NC_008229.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1252323 pepA 4176744 pepA Helicobacter acinonychis str. Sheeba leucyl aminopeptidase YP_665169.1 1250833 D 382638 CDS YP_665170.1 109947942 4177314 1252325..1253425 1 NC_008229.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1253425 4177314 Hac_1443 Helicobacter acinonychis str. Sheeba GTP-dependent nucleic acid-binding protein EngD YP_665170.1 1252325 D 382638 CDS YP_665171.1 109947943 4177315 1253463..1253615 1 NC_008229.1 hypothetical protein 1253615 4177315 Hac_1444 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665171.1 1253463 D 382638 CDS YP_665172.1 109947944 4177054 1253594..1253851 1 NC_008229.1 hypothetical protein 1253851 fragment 1 4177054 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665172.1 1253594 D 382638 CDS YP_665173.1 109947945 4177034 1253887..1254333 1 NC_008229.1 hypothetical protein 1254333 fragment 2 4177034 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665173.1 1253887 D 382638 CDS YP_665174.1 109947946 4176813 1254473..1256845 1 NC_008229.1 (P13036) Iron(III) dicitrate transport protein fecA precursor; High confidence in function and specificity; iron(III) dicitrate transport protein 1256845 fecA 4176813 fecA Helicobacter acinonychis str. Sheeba iron(III) dicitrate transport protein YP_665174.1 1254473 D 382638 CDS YP_665175.1 109947947 4177316 complement(1257548..1258468) 1 NC_008229.1 hypothetical protein 1258468 4177316 Hac_1450 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665175.1 1257548 R 382638 CDS YP_665176.1 109947948 4177317 complement(1258704..1259138) 1 NC_008229.1 hypothetical protein 1259138 4177317 Hac_1451 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665176.1 1258704 R 382638 CDS YP_665177.1 109947949 4176580 complement(1259480..1260340) 1 NC_008229.1 outer membrane protein 29 1260340 omp29 4176580 omp29 Helicobacter acinonychis str. Sheeba outer membrane protein 29 YP_665177.1 1259480 R 382638 CDS YP_665178.1 109947950 4176833 complement(1260523..1260873) 1 NC_008229.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1260873 rplT 4176833 rplT Helicobacter acinonychis str. Sheeba 50S ribosomal protein L20 YP_665178.1 1260523 R 382638 CDS YP_665179.1 109947951 4177682 complement(1261140..1261751) 1 NC_008229.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1261751 infC 4177682 infC Helicobacter acinonychis str. Sheeba translation initiation factor IF-3 YP_665179.1 1261140 R 382638 CDS YP_665180.1 109947952 4177477 complement(1261748..1263586) 1 NC_008229.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1263586 thrS 4177477 thrS Helicobacter acinonychis str. Sheeba threonyl-tRNA synthetase YP_665180.1 1261748 R 382638 CDS YP_665181.1 109947953 4177318 complement(1263631..1263771) 1 NC_008229.1 (O24940) Hypothetical protein HP0122/JHP0112 precursor; Conserved hypothetical protein; hypothetical protein 1263771 4177318 Hac_1458 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665181.1 1263631 R 382638 CDS YP_665182.1 109947954 4176556 1263948..1266368 1 NC_008229.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1266368 ppsA 4176556 ppsA Helicobacter acinonychis str. Sheeba phosphoenolpyruvate synthase YP_665182.1 1263948 D 382638 CDS YP_665183.1 109947955 4176946 1266560..1267270 1 NC_008229.1 outer membrane protein; hypothetical protein; hypothetical protein 1267270 4176946 Hac_1460 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665183.1 1266560 D 382638 CDS YP_665184.1 109947956 4176639 complement(1267242..1268012) 1 NC_008229.1 Function unclear; glycosyl transferase family protein 1268012 wbyL 4176639 wbyL Helicobacter acinonychis str. Sheeba glycosyl transferase family protein YP_665184.1 1267242 R 382638 CDS YP_665185.1 109947957 4177482 complement(1268043..1269740) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 1269740 tlpB 4177482 tlpB Helicobacter acinonychis str. Sheeba hypothetical protein YP_665185.1 1268043 R 382638 CDS YP_665186.1 109947958 4177626 complement(1270023..1270496) 1 NC_008229.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1270496 luxS 4177626 luxS Helicobacter acinonychis str. Sheeba S-ribosylhomocysteinase YP_665186.1 1270023 R 382638 CDS YP_665187.1 109947959 4176761 complement(1270532..1271674) 1 NC_008229.1 catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine and L-cysteine; or Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine; cystathionine gamma-synthase 1271674 metB 4176761 metB Helicobacter acinonychis str. Sheeba cystathionine gamma-synthase YP_665187.1 1270532 R 382638 CDS YP_665188.1 109947960 4176396 complement(1271700..1272614) 1 NC_008229.1 (Q9ZMW6) Cysteine synthase; High confidence in function and specificity; hypothetical protein 1272614 cysK 4176396 cysK Helicobacter acinonychis str. Sheeba hypothetical protein YP_665188.1 1271700 R 382638 CDS YP_665189.1 109947961 4176947 1272692..1272856 1 NC_008229.1 hypothetical protein 1272856 4176947 Hac_1466 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665189.1 1272692 D 382638 CDS YP_665190.1 109947962 4176948 complement(1272881..1273165) 1 NC_008229.1 Probable proton transporting ATP synthase subunit,atp I; hypothetical protein; hypothetical protein 1273165 4176948 Hac_1467 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665190.1 1272881 R 382638 CDS YP_665191.1 109947963 4177135 complement(1273411..1275273) 1 NC_008229.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1275273 dnaK 4177135 dnaK Helicobacter acinonychis str. Sheeba molecular chaperone DnaK YP_665191.1 1273411 R 382638 CDS YP_665192.1 109947964 4177274 complement(1275301..1275861) 1 NC_008229.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1275861 grpE 4177274 grpE Helicobacter acinonychis str. Sheeba heat shock protein GrpE YP_665192.1 1275301 R 382638 CDS YP_665193.1 109947965 4176885 complement(1275858..1276661) 1 NC_008229.1 Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor 1276661 hrcA 4176885 hrcA Helicobacter acinonychis str. Sheeba heat-inducible transcription repressor YP_665193.1 1275858 R 382638 CDS YP_665194.1 109947966 4176949 1276901..1277539 1 NC_008229.1 ribulose-5-phosphate 4-epimerase; Function unclear; hypothetical protein 1277539 4176949 Hac_1471 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665194.1 1276901 D 382638 CDS YP_665195.1 109947967 4176950 1277560..1277862 1 NC_008229.1 hypothetical protein 1277862 4176950 Hac_1472 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665195.1 1277560 D 382638 CDS YP_665196.1 109947968 4176951 complement(1277872..1279755) 1 NC_008229.1 Function unclear; hypothetical protein 1279755 4176951 Hac_1473 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665196.1 1277872 R 382638 CDS YP_665197.1 109947969 4176826 complement(1279803..1281347) 1 NC_008229.1 FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin B 1281347 flaB 4176826 flaB Helicobacter acinonychis str. Sheeba flagellin B YP_665197.1 1279803 R 382638 CDS YP_665198.1 109947970 4177488 1281528..1283738 1 NC_008229.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1283738 topA 4177488 topA Helicobacter acinonychis str. Sheeba DNA topoisomerase I YP_665198.1 1281528 D 382638 CDS YP_665199.1 109947971 4176952 1283746..1284657 1 NC_008229.1 Probable Fe-S oxidoreductases; Specificity unclear; hypothetical protein 1284657 4176952 Hac_1476 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665199.1 1283746 D 382638 CDS YP_665200.1 109947972 4176953 complement(1284980..1286086) 1 NC_008229.1 Function unclear; hypothetical protein 1286086 4176953 Hac_1477 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665200.1 1284980 R 382638 CDS YP_665201.1 109947973 4176758 complement(1286086..1288113) 1 NC_008229.1 Methyl-accepting chemotaxis protein; Function unclear; hypothetical protein 1288113 mcp 4176758 mcp Helicobacter acinonychis str. Sheeba hypothetical protein YP_665201.1 1286086 R 382638 CDS YP_665202.1 109947974 4177476 1288291..1289763 1 NC_008229.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1289763 thrC 4177476 thrC Helicobacter acinonychis str. Sheeba threonine synthase YP_665202.1 1288291 D 382638 CDS YP_665203.1 109947975 4176954 1289869..1290579 1 NC_008229.1 hypothetical protein 1290579 4176954 Hac_1480 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665203.1 1289869 D 382638 CDS YP_665204.1 109947976 4176955 complement(1290829..1291773) 1 NC_008229.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1291773 4176955 Hac_1481 Helicobacter acinonychis str. Sheeba 2-hydroxyacid dehydrogenase YP_665204.1 1290829 R 382638 CDS YP_665205.1 109947977 4176956 1291845..1292357 1 NC_008229.1 hypothetical protein 1292357 4176956 Hac_1482 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665205.1 1291845 D 382638 CDS YP_665206.1 109947978 4176122 complement(1292680..1292778) 1 NC_008229.1 ISHp608-like IS element; hypothetical protein; ISHa1152 transposase B fragment 3 1292778 ISHa1152 tnpB fragment 3 4176122 ISHa1152 tnpB fragment 3 Helicobacter acinonychis str. Sheeba ISHa1152 transposase B fragment 3 YP_665206.1 1292680 R 382638 CDS YP_665207.1 109947979 4177689 complement(1292800..1292901) 1 NC_008229.1 ISHp608-like IS element; hypothetical protein; ISHa1152 transposase B fragment 2 1292901 ISHa1152 tnpB fragment 2 4177689 ISHa1152 tnpB fragment 2 Helicobacter acinonychis str. Sheeba ISHa1152 transposase B fragment 2 YP_665207.1 1292800 R 382638 CDS YP_665208.1 109947980 4177687 complement(1292882..1292995) 1 NC_008229.1 ISHp608-like IS element; hypothetical protein; ISHa1152 transposase B fragment 1 1292995 ISHa1152 tnpB fragment 1 4177687 ISHa1152 tnpB fragment 1 Helicobacter acinonychis str. Sheeba ISHa1152 transposase B fragment 1 YP_665208.1 1292882 R 382638 CDS YP_665209.1 109947981 4177685 complement(1292964..1293368) 1 NC_008229.1 N-terminal truncated, 1-22 aa missing,ISHp608-like IS element; Specificity unclear; ISHa1152 transposase A 1293368 ISHa1152 tnpA 4177685 ISHa1152 tnpA Helicobacter acinonychis str. Sheeba ISHa1152 transposase A YP_665209.1 1292964 R 382638 CDS YP_665210.1 109947982 4176957 complement(1293615..1293734) 1 NC_008229.1 hypothetical protein 1293734 4176957 Hac_1488 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665210.1 1293615 R 382638 CDS YP_665211.1 109947983 4176582 1293739..1294389 1 NC_008229.1 hypothetical protein 1294389 omp30 fragment 1 4176582 omp30 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665211.1 1293739 D 382638 CDS YP_665212.1 109947984 4176583 1294443..1294892 1 NC_008229.1 hypothetical protein 1294892 omp30 fragment 2 4176583 omp30 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665212.1 1294443 D 382638 CDS YP_665213.1 109947985 4176584 1294940..1295704 1 NC_008229.1 hypothetical protein 1295704 omp30 fragment 3 4176584 omp30 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665213.1 1294940 D 382638 CDS YP_665214.1 109947986 4176958 complement(1295815..1296648) 1 NC_008229.1 integral membrane protein; Specificity unclear; hypothetical protein 1296648 4176958 Hac_1493 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665214.1 1295815 R 382638 CDS YP_665215.1 109947987 4176731 complement(1297098..1298132) 1 NC_008229.1 (Q9ZMK8) Peptide methionine sulfoxide reductase; High confidence in function and specificity; hypothetical protein 1298132 msrA 4176731 msrA Helicobacter acinonychis str. Sheeba hypothetical protein YP_665215.1 1297098 R 382638 CDS YP_665216.1 109947988 4177064 complement(1298408..1299754) 1 NC_008229.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1299754 radA 4177064 radA Helicobacter acinonychis str. Sheeba DNA repair protein RadA YP_665216.1 1298408 R 382638 CDS YP_665217.1 109947989 4177446 complement(1299767..1300747) 1 NC_008229.1 (P23121) Nitrogen fixation protein nifU; High confidence in function and specificity; nifU-like protein 1300747 nifU 4177446 nifU Helicobacter acinonychis str. Sheeba nifU-like protein YP_665217.1 1299767 R 382638 CDS YP_665218.1 109947990 4177445 complement(1300769..1301932) 1 NC_008229.1 (Q9ZML2) Cysteine desulfurase (EC 2.8.1.7); High confidence in function and specificity; hypothetical protein 1301932 nifS 4177445 nifS Helicobacter acinonychis str. Sheeba hypothetical protein YP_665218.1 1300769 R 382638 CDS YP_665219.1 109947991 4176959 complement(1302135..1302590) 1 NC_008229.1 hypothetical protein 1302590 4176959 Hac_1499 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665219.1 1302135 R 382638 CDS YP_665220.1 109947992 4176960 1302740..1303291 1 NC_008229.1 Predicted phospholipid-binding protein; High confidence in function and specificity; hypothetical protein 1303291 4176960 Hac_1500 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665220.1 1302740 D 382638 CDS YP_665221.1 109947993 4176961 complement(1303359..1304501) 1 NC_008229.1 glycosyltransferase; hypothetical protein; hypothetical protein 1304501 4176961 Hac_1501 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665221.1 1303359 R 382638 CDS YP_665222.1 109947994 4176387 complement(1304578..1305318) 1 NC_008229.1 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase [EC:1.1.1.267]; High confidence in function and specificity; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1305318 dxr fragment 2 4176387 dxr fragment 2 Helicobacter acinonychis str. Sheeba 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_665222.1 1304578 R 382638 CDS YP_665223.1 109947995 4176386 complement(1305272..1305670) 1 NC_008229.1 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase [EC:1.1.1.267]; High confidence in function and specificity; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1305670 dxr fragment 1 4176386 dxr fragment 1 Helicobacter acinonychis str. Sheeba 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_665223.1 1305272 R 382638 CDS YP_665224.1 109947996 4176596 complement(1305671..1306471) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 1306471 cdsA 4176596 cdsA Helicobacter acinonychis str. Sheeba hypothetical protein YP_665224.1 1305671 R 382638 CDS YP_665225.1 109947997 4176962 complement(1306480..1308141) 1 NC_008229.1 (Q8WWT9) Solute carrier family 13 member 3 (Sodium-dependent high-affinity dicarboxylate transporter 2); High confidence in function and specificity; sodium-dependent transporter 1308141 4176962 Hac_1505 Helicobacter acinonychis str. Sheeba sodium-dependent transporter YP_665225.1 1306480 R 382638 CDS YP_665226.1 109947998 4177763 1308237..1310102 1 NC_008229.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1310102 gidA 4177763 gidA Helicobacter acinonychis str. Sheeba tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_665226.1 1308237 D 382638 CDS YP_665227.1 109947999 4176404 1310113..1311264 1 NC_008229.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1311264 dapE 4176404 dapE Helicobacter acinonychis str. Sheeba succinyl-diaminopimelate desuccinylase YP_665227.1 1310113 D 382638 CDS YP_665228.1 109948000 4177543 complement(1311605..1313470) 1 NC_008229.1 molecular chaperone; heat shock protein 90 1313470 htpG 4177543 htpG Helicobacter acinonychis str. Sheeba heat shock protein 90 YP_665228.1 1311605 R 382638 CDS YP_665229.1 109948001 4177012 1313638..1314102 1 NC_008229.1 alpha-1,2-fucosyltransferase 1314102 fucT fragment 1 4177012 fucT fragment 1 Helicobacter acinonychis str. Sheeba alpha-1,2-fucosyltransferase YP_665229.1 1313638 D 382638 CDS YP_665230.1 109948002 4177014 1314099..1314230 1 NC_008229.1 alpha-1,2-fucosyltransferase 1314230 fucT fragment 2 4177014 fucT fragment 2 Helicobacter acinonychis str. Sheeba alpha-1,2-fucosyltransferase YP_665230.1 1314099 D 382638 CDS YP_665231.1 109948003 4176963 complement(1314237..1315073) 1 NC_008229.1 type II DNA modification enzyme (methyltransferase) [EC:2.1.1.72]; High confidence in function and specificity; DNA methyltransferase 1315073 4176963 Hac_1512 Helicobacter acinonychis str. Sheeba DNA methyltransferase YP_665231.1 1314237 R 382638 CDS YP_665232.1 109948004 4176887 complement(1315091..1315783) 1 NC_008229.1 Conserved hypothetical protein; HrgA protein fragment 2 1315783 hrgA fragment 2 4176887 hrgA fragment 2 Helicobacter acinonychis str. Sheeba HrgA protein fragment 2 YP_665232.1 1315091 R 382638 CDS YP_665233.1 109948005 4176886 complement(1315752..1316093) 1 NC_008229.1 Function unclear; HrgA protein fragment 1 1316093 hrgA fragment 1 4176886 hrgA fragment 1 Helicobacter acinonychis str. Sheeba HrgA protein fragment 1 YP_665233.1 1315752 R 382638 CDS YP_665234.1 109948006 4177407 1316531..1317460 1 NC_008229.1 (P71019) Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) (MCT); High confidence in function and specificity; malonyl CoA-acyl carrier protein transacylase 1317460 fabD 4177407 fabD Helicobacter acinonychis str. Sheeba malonyl CoA-acyl carrier protein transacylase YP_665234.1 1316531 D 382638 CDS YP_665235.1 109948007 4176964 1317457..1318167 1 NC_008229.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1318167 4176964 Hac_1516 Helicobacter acinonychis str. Sheeba 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_665235.1 1317457 D 382638 CDS YP_665236.1 109948008 4176864 1318546..1320525 1 NC_008229.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1320525 rpoD 4176864 rpoD Helicobacter acinonychis str. Sheeba RNA polymerase sigma factor RpoD YP_665236.1 1318546 D 382638 CDS YP_665237.1 109948009 4177338 1320545..1321960 1 NC_008229.1 exported protein; Conserved hypothetical protein; hypothetical protein 1321960 4177338 Hac_1518 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665237.1 1320545 D 382638 CDS YP_665238.1 109948010 4177339 1322013..1323365 1 NC_008229.1 (O24913) Malate:quinone oxidoreductase (EC 1.1.99.16) (Malate dehydrogenase [acceptor]) (MQO); High confidence in function and specificity; malate dehydrogenase (acceptor) 1323365 4177339 Hac_1519 Helicobacter acinonychis str. Sheeba malate dehydrogenase (acceptor) YP_665238.1 1322013 D 382638 CDS YP_665239.1 109948011 4177340 1323367..1323555 1 NC_008229.1 (O24912) Hypothetical protein HP0085/JHP0078; Conserved hypothetical protein; hypothetical protein 1323555 4177340 Hac_1520 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665239.1 1323367 D 382638 CDS YP_665240.1 109948012 4176844 1323834..1324259 1 NC_008229.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1324259 rplM 4176844 rplM Helicobacter acinonychis str. Sheeba 50S ribosomal protein L13 YP_665240.1 1323834 D 382638 CDS YP_665241.1 109948013 4177149 1324256..1324645 1 NC_008229.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1324645 rpsI 4177149 rpsI Helicobacter acinonychis str. Sheeba 30S ribosomal protein S9 YP_665241.1 1324256 D 382638 CDS YP_665242.1 109948014 4176759 1324790..1326811 1 NC_008229.1 Methyl-accepting chemotaxis protein mcpB; Function unclear; hypothetical protein 1326811 mcp 4176759 mcp Helicobacter acinonychis str. Sheeba hypothetical protein YP_665242.1 1324790 D 382638 CDS YP_665243.1 109948015 4177341 complement(1327075..1328844) 1 NC_008229.1 hypothetical protein 1328844 4177341 Hac_1525 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665243.1 1327075 R 382638 CDS YP_665244.1 109948016 4176559 complement(1328955..1330013) 1 NC_008229.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1330013 prfA 4176559 prfA Helicobacter acinonychis str. Sheeba peptide chain release factor 1 YP_665244.1 1328955 R 382638 CDS YP_665245.1 109948017 4177159 complement(1330132..1330401) 1 NC_008229.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1330401 rpsT 4177159 rpsT Helicobacter acinonychis str. Sheeba 30S ribosomal protein S20 YP_665245.1 1330132 R 382638 CDS YP_665246.1 109948018 4176729 1330492..1331829 1 NC_008229.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1331829 glmM 4176729 glmM Helicobacter acinonychis str. Sheeba phosphoglucosamine mutase YP_665246.1 1330492 D 382638 CDS YP_665247.1 109948019 4177625 1331823..1332296 1 NC_008229.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1332296 lspA 4177625 lspA Helicobacter acinonychis str. Sheeba lipoprotein signal peptidase YP_665247.1 1331823 D 382638 CDS YP_665248.1 109948020 4176685 1332632..1333348 1 NC_008229.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit alpha 1333348 ureA 4176685 ureA Helicobacter acinonychis str. Sheeba urease subunit alpha YP_665248.1 1332632 D 382638 CDS YP_665249.1 109948021 4176688 1333352..1335061 1 NC_008229.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit beta 1335061 ureB 4176688 ureB Helicobacter acinonychis str. Sheeba urease subunit beta YP_665249.1 1333352 D 382638 CDS YP_665250.1 109948022 4176693 1335285..1335872 1 NC_008229.1 High confidence in function and specificity; urease accessory protein 1335872 ureI 4176693 ureI Helicobacter acinonychis str. Sheeba urease accessory protein YP_665250.1 1335285 D 382638 CDS YP_665251.1 109948023 4176689 1335874..1336386 1 NC_008229.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 1336386 ureE 4176689 ureE Helicobacter acinonychis str. Sheeba urease accessory protein UreE YP_665251.1 1335874 D 382638 CDS YP_665252.1 109948024 4176690 1336411..1337160 1 NC_008229.1 (Q09065) Urease accessory protein ureF; High confidence in function and specificity; hypothetical protein 1337160 ureF 4176690 ureF Helicobacter acinonychis str. Sheeba hypothetical protein YP_665252.1 1336411 D 382638 CDS YP_665253.1 109948025 4176691 1337191..1337790 1 NC_008229.1 (Q9ZMZ7) Urease accessory protein ureG; High confidence in function and specificity; urease accessory protein UreG 1337790 ureG 4176691 ureG Helicobacter acinonychis str. Sheeba urease accessory protein UreG YP_665253.1 1337191 D 382638 CDS YP_665254.1 109948026 4176692 1337790..1338581 1 NC_008229.1 (Q9ZMZ8) Urease accessory protein ureH; High confidence in function and specificity; urease accessory protein UreD 1338581 ureH 4176692 ureH Helicobacter acinonychis str. Sheeba urease accessory protein UreD YP_665254.1 1337790 D 382638 CDS YP_665255.1 109948027 4176517 complement(1338616..1338900) 1 NC_008229.1 hypothetical protein 1338900 fragment 5 4176517 fragment 5 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665255.1 1338616 R 382638 CDS YP_665256.1 109948028 4176515 complement(1338804..1339100) 1 NC_008229.1 hypothetical protein 1339100 fragment 4 4176515 fragment 4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665256.1 1338804 R 382638 CDS YP_665257.1 109948029 4177293 complement(1339207..1339602) 1 NC_008229.1 Conserved hypothetical protein; hypothetical protein 1339602 fragment 3 4177293 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665257.1 1339207 R 382638 CDS YP_665258.1 109948030 4177035 complement(1339718..1339924) 1 NC_008229.1 Function unclear; hypothetical protein 1339924 fragment 2 4177035 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665258.1 1339718 R 382638 CDS YP_665259.1 109948031 4177055 complement(1340039..1340233) 1 NC_008229.1 hypothetical protein 1340233 fragment 1 4177055 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665259.1 1340039 R 382638 CDS YP_665260.1 109948032 4177082 1340256..1341473 1 NC_008229.1 (P27129) Lipopolysaccharide 1,2-glucosyltransferase; High confidence in function and specificity; lipopolysaccharide biosynthesis protein 1341473 rfaJ 4177082 rfaJ Helicobacter acinonychis str. Sheeba lipopolysaccharide biosynthesis protein YP_665260.1 1340256 D 382638 CDS YP_665261.1 109948033 4177342 complement(1341474..1341791) 1 NC_008229.1 Conserved hypothetical protein; hypothetical protein 1341791 4177342 Hac_1546 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665261.1 1341474 R 382638 CDS YP_665262.1 109948034 4177294 complement(1341775..1341906) 1 NC_008229.1 hypothetical protein 1341906 fragment 3 4177294 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665262.1 1341775 R 382638 CDS YP_665263.1 109948035 4177036 complement(1341910..1342173) 1 NC_008229.1 hypothetical protein 1342173 fragment 2 4177036 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665263.1 1341910 R 382638 CDS YP_665264.1 109948036 4177056 complement(1342163..1342288) 1 NC_008229.1 hypothetical protein 1342288 fragment 1 4177056 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665264.1 1342163 R 382638 CDS YP_665265.1 109948037 4176124 complement(1342387..1343670) 1 NC_008229.1 IS605 like IS element; High confidence in function and specificity; ISHa1675 transposase B 1343670 ISHa1675 tnpB 4176124 ISHa1675 tnpB Helicobacter acinonychis str. Sheeba ISHa1675 transposase B YP_665265.1 1342387 R 382638 CDS YP_665266.1 109948038 4176123 1343828..1343941 1 NC_008229.1 tnpA, N-terminal fragment; Function unclear; ISHa1675 transposase A N-terminal fragment 1343941 ISHa1675 tnpA 4176123 ISHa1675 tnpA Helicobacter acinonychis str. Sheeba ISHa1675 transposase A N-terminal fragment YP_665266.1 1343828 D 382638 CDS YP_665267.1 109948039 4177295 complement(1344180..1344323) 1 NC_008229.1 hypothetical protein 1344323 fragment 3 4177295 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665267.1 1344180 R 382638 CDS YP_665268.1 109948040 4177037 complement(1344357..1344563) 1 NC_008229.1 hypothetical protein 1344563 fragment 2 4177037 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665268.1 1344357 R 382638 CDS YP_665269.1 109948041 4177057 complement(1344614..1344739) 1 NC_008229.1 hypothetical protein 1344739 fragment 1 4177057 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665269.1 1344614 R 382638 CDS YP_665270.1 109948042 4177343 complement(1344736..1344891) 1 NC_008229.1 hypothetical protein 1344891 4177343 Hac_1555 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665270.1 1344736 R 382638 CDS YP_665271.1 109948043 4177344 complement(1345699..1345920) 1 NC_008229.1 hypothetical protein 1345920 4177344 Hac_1556 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665271.1 1345699 R 382638 CDS YP_665272.1 109948044 4177746 1346235..1349792 1 NC_008229.1 (O52485) Bifunctional putA protein [Includes: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C dehydrogenase)](O52485) Bifunctional putA protein [Includes: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C dehydrogenase)]; High confidence in function and specificity; proline/pyrroline dehydrogenase 1349792 putA 4177746 putA Helicobacter acinonychis str. Sheeba proline/pyrroline dehydrogenase YP_665272.1 1346235 D 382638 CDS YP_665273.1 109948045 4177747 1349819..1351315 1 NC_008229.1 (P07117) Sodium/proline symporter (Proline permease); High confidence in function and specificity; sodium/proline symporter 1351315 putP 4177747 putP Helicobacter acinonychis str. Sheeba sodium/proline symporter YP_665273.1 1349819 D 382638 CDS YP_665274.1 109948046 4177083 1351378..1352595 1 NC_008229.1 (P25148) General stress protein A(P25148) General stress protein A; High confidence in function and specificity; lipopolysaccharide biosynthesis protein 1352595 rfaJ 4177083 rfaJ Helicobacter acinonychis str. Sheeba lipopolysaccharide biosynthesis protein YP_665274.1 1351378 D 382638 CDS YP_665275.1 109948047 4176728 complement(1352652..1353758) 1 NC_008229.1 (O24999) Mrp protein homolog(O24999) Mrp protein homolog; High confidence in function and specificity; mrp-like protein, ATP/GTP-binding protein 1353758 mrp 4176728 mrp Helicobacter acinonychis str. Sheeba mrp-like protein, ATP/GTP-binding protein YP_665275.1 1352652 R 382638 CDS YP_665276.1 109948048 4177058 1353896..1356088 1 NC_008229.1 hypothetical protein 1356088 fragment 1 4177058 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665276.1 1353896 D 382638 CDS YP_665277.1 109948049 4177038 1356101..1356991 1 NC_008229.1 hypothetical protein 1356991 fragment 2 4177038 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665277.1 1356101 D 382638 CDS YP_665278.1 109948050 4177345 1357031..1357414 1 NC_008229.1 (P53127) Hypothetical 163.2 kDa protein in RPL1B-CEG1 intergenic region(P53127) Hypothetical 163.2 kDa protein in RPL1B-CEG1 intergenic region; conserved hypothetical protein; hypothetical protein 1357414 4177345 Hac_1564 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665278.1 1357031 D 382638 CDS YP_665279.1 109948051 4176939 complement(1357421..1358461) 1 NC_008229.1 (O25801) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA dehydrogenase) (ASADH)(O25801) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA dehydrogenase) (ASADH); High confidence in function and specificity; hypothetical protein 1358461 asd 4176939 asd Helicobacter acinonychis str. Sheeba hypothetical protein YP_665279.1 1357421 R 382638 CDS YP_665280.1 109948052 4177433 complement(1358448..1359776) 1 NC_008229.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1359776 hisS 4177433 hisS Helicobacter acinonychis str. Sheeba histidyl-tRNA synthetase YP_665280.1 1358448 R 382638 CDS YP_665281.1 109948053 4177079 1359838..1360887 1 NC_008229.1 High confidence in function and specificity; ADP-heptose--LPS heptosyltransferase II 1360887 rfaF 4177079 rfaF Helicobacter acinonychis str. Sheeba ADP-heptose--LPS heptosyltransferase II YP_665281.1 1359838 D 382638 CDS YP_665282.1 109948054 4177346 complement(1361033..1361359) 1 NC_008229.1 (P35612) Beta adducin (Erythrocyte adducin beta subunit)(P35612) Beta adducin (Erythrocyte adducin beta subunit); conserved hypothetical protein; hypothetical protein 1361359 4177346 Hac_1568 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665282.1 1361033 R 382638 CDS YP_665283.1 109948055 4177468 1361600..1361971 1 NC_008229.1 Function unclear; aldo-keto reductase 1361971 tas1 fragment 1 4177468 tas1 fragment 1 Helicobacter acinonychis str. Sheeba aldo-keto reductase YP_665283.1 1361600 D 382638 CDS YP_665284.1 109948056 4177469 1362052..1362249 1 NC_008229.1 (P49249) IN2-2 protein(P49249) IN2-2 protein; High confidence in function and specificity; aldo-keto reductase 1362249 tas1 fragment 2 4177469 tas1 fragment 2 Helicobacter acinonychis str. Sheeba aldo-keto reductase YP_665284.1 1362052 D 382638 CDS YP_665285.1 109948057 4177470 1362246..1362563 1 NC_008229.1 (Q09923) Aldo-keto reductase yakc [NADP+] (EC 1.1.1.-)(Q09923) Aldo-keto reductase yakc [NADP+] (EC 1.1.1.-); High confidence in function and specificity; aldo-keto reductase 1362563 tas1 fragment 3 4177470 tas1 fragment 3 Helicobacter acinonychis str. Sheeba aldo-keto reductase YP_665285.1 1362246 D 382638 CDS YP_665286.1 109948058 4177019 complement(1363087..1365165) 1 NC_008229.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1365165 fusA 4177019 fusA Helicobacter acinonychis str. Sheeba elongation factor G YP_665286.1 1363087 R 382638 CDS YP_665287.1 109948059 4177147 complement(1365177..1365644) 1 NC_008229.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1365644 rpsG 4177147 rpsG Helicobacter acinonychis str. Sheeba 30S ribosomal protein S7 YP_665287.1 1365177 R 382638 CDS YP_665288.1 109948060 4177152 complement(1365657..1366049) 1 NC_008229.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1366049 rpsL 4177152 rpsL Helicobacter acinonychis str. Sheeba 30S ribosomal protein S12 YP_665288.1 1365657 R 382638 CDS YP_665289.1 109948061 4176863 complement(1366137..1374809) 1 NC_008229.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; fusion of rpoB and rpoC; beta and beta' subunits are part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta/beta' 1374809 rpoB 4176863 rpoB Helicobacter acinonychis str. Sheeba DNA-directed RNA polymerase subunit beta/beta' YP_665289.1 1366137 R 382638 CDS YP_665290.1 109948062 4176843 complement(1375033..1375410) 1 NC_008229.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1375410 rplL 4176843 rplL Helicobacter acinonychis str. Sheeba 50S ribosomal protein L7/L12 YP_665290.1 1375033 R 382638 CDS YP_665291.1 109948063 4176841 complement(1375456..1375938) 1 NC_008229.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1375938 rplJ 4176841 rplJ Helicobacter acinonychis str. Sheeba 50S ribosomal protein L10 YP_665291.1 1375456 R 382638 CDS YP_665292.1 109948064 4176834 complement(1376047..1376751) 1 NC_008229.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1376751 rplA 4176834 rplA Helicobacter acinonychis str. Sheeba 50S ribosomal protein L1 YP_665292.1 1376047 R 382638 CDS YP_665293.1 109948065 4176842 complement(1376800..1377225) 1 NC_008229.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1377225 rplK 4176842 rplK Helicobacter acinonychis str. Sheeba 50S ribosomal protein L11 YP_665293.1 1376800 R 382638 CDS YP_665294.1 109948066 4176464 complement(1377242..1377769) 1 NC_008229.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1377769 nusG 4176464 nusG Helicobacter acinonychis str. Sheeba transcription antitermination protein NusG YP_665294.1 1377242 R 382638 CDS YP_665295.1 109948067 4177169 complement(1377800..1377979) 1 NC_008229.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1377979 secE 4177169 secE Helicobacter acinonychis str. Sheeba preprotein translocase subunit SecE YP_665295.1 1377800 R 382638 CDS YP_665296.1 109948068 4176861 complement(1378223..1378381) 1 NC_008229.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1378381 rpmG 4176861 rpmG Helicobacter acinonychis str. Sheeba 50S ribosomal protein L33 YP_665296.1 1378223 R 382638 CDS YP_665297.1 109948069 4176676 complement(1378418..1379617) 1 NC_008229.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1379617 tuf 4176676 tuf Helicobacter acinonychis str. Sheeba elongation factor Tu YP_665297.1 1378418 R 382638 CDS YP_665298.1 109948070 4177431 1380333..1382069 1 NC_008229.1 (P22638) Heterocyst differentiation ATP-binding protein hepA(P22638) Heterocyst differentiation ATP-binding protein hepA; High confidence in function and specificity; ABC transporter ATP-binding protein 1382069 hetA 4177431 hetA Helicobacter acinonychis str. Sheeba ABC transporter ATP-binding protein YP_665298.1 1380333 D 382638 CDS YP_665299.1 109948071 4177347 complement(1382076..1382744) 1 NC_008229.1 (Q8DCT7) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGP)(Q8DCT7) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGP); conserved hypothetical protein; hypothetical protein 1382744 4177347 Hac_1588 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665299.1 1382076 R 382638 CDS YP_665300.1 109948072 4177106 complement(1383259..1383576) 1 NC_008229.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1383576 atpE 4177106 atpE Helicobacter acinonychis str. Sheeba F0F1 ATP synthase subunit C YP_665300.1 1383259 R 382638 CDS YP_665301.1 109948073 4176785 complement(1383708..1385774) 1 NC_008229.1 (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) (Vegetative protein 15) (VEG15)(P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) (Vegetative protein 15) (VEG15); High confidence in function and specificity; polynucleotide phosphorylase/polyadenylase 1385774 pnp 4176785 pnp Helicobacter acinonychis str. Sheeba polynucleotide phosphorylase/polyadenylase YP_665301.1 1383708 R 382638 CDS YP_665302.1 109948074 4177348 complement(1385777..1386481) 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 1386481 4177348 Hac_1592 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665302.1 1385777 R 382638 CDS YP_665303.1 109948075 4177332 complement(1386496..1388757) 1 NC_008229.1 (Q8PP22) Organic solvent tolerance protein precursor(; Function unclear; organic solvent tolerance protein 1388757 ostA 4177332 ostA Helicobacter acinonychis str. Sheeba organic solvent tolerance protein YP_665303.1 1386496 R 382638 CDS YP_665304.1 109948076 4177349 complement(1388760..1389239) 1 NC_008229.1 Function unclear; hypothetical protein 1389239 4177349 Hac_1594 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665304.1 1388760 R 382638 CDS YP_665305.1 109948077 4177744 complement(1389279..1390553) 1 NC_008229.1 High confidence in function and specificity; glycinamide ribonucleotide synthetase 1390553 purD 4177744 purD Helicobacter acinonychis str. Sheeba glycinamide ribonucleotide synthetase YP_665305.1 1389279 R 382638 CDS YP_665306.1 109948078 4177714 complement(1390829..1391515) 1 NC_008229.1 (P54591) Hypothetical ABC transporter ATP-binding protein yhcG(P54591) Hypothetical ABC transporter ATP-binding protein yhcG; High confidence in function and specificity; ABC transporter ATP-binding protein 1391515 yhcG 4177714 yhcG Helicobacter acinonychis str. Sheeba ABC transporter ATP-binding protein YP_665306.1 1390829 R 382638 CDS YP_665307.1 109948079 4176684 complement(1391509..1392180) 1 NC_008229.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1392180 uppS 4176684 uppS Helicobacter acinonychis str. Sheeba undecaprenyl pyrophosphate synthase YP_665307.1 1391509 R 382638 CDS YP_665308.1 109948080 4177129 complement(1392256..1395096) 1 NC_008229.1 (Q57252) Protein HI1163(Q57252) Protein HI1163; High confidence in function and specificity; D-lactate dehydrogenase 1395096 dld 4177129 dld Helicobacter acinonychis str. Sheeba D-lactate dehydrogenase YP_665308.1 1392256 R 382638 CDS YP_665309.1 109948081 4177350 1395168..1395506 1 NC_008229.1 Function unclear; hypothetical protein 1395506 4177350 Hac_1599 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665309.1 1395168 D 382638 CDS YP_665310.1 109948082 4177424 1395521..1396183 1 NC_008229.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1396183 hemD 4177424 hemD Helicobacter acinonychis str. Sheeba uroporphyrinogen-III synthase YP_665310.1 1395521 D 382638 CDS YP_665311.1 109948083 4176901 1396230..1396613 1 NC_008229.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1396613 crcB3 4176901 crcB3 Helicobacter acinonychis str. Sheeba camphor resistance protein CrcB YP_665311.1 1396230 D 382638 CDS YP_665312.1 109948084 4177582 1396754..1396894 1 NC_008229.1 hypothetical protein 1396894 Hac prophage II orf1 4177582 Hac prophage II orf1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665312.1 1396754 D 382638 CDS YP_665313.1 109948085 4177554 1397007..1397255 1 NC_008229.1 hypothetical protein 1397255 Hac prophage II orf2 4177554 Hac prophage II orf2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665313.1 1397007 D 382638 CDS YP_665314.1 109948086 4177565 1397361..1398497 1 NC_008229.1 Function unclear; bacteriophage-related integrase 1398497 Hac prophage II orf3 4177565 Hac prophage II orf3 Helicobacter acinonychis str. Sheeba bacteriophage-related integrase YP_665314.1 1397361 D 382638 CDS YP_665315.1 109948087 4177569 1398497..1398673 1 NC_008229.1 hypothetical protein 1398673 Hac prophage II orf4 4177569 Hac prophage II orf4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665315.1 1398497 D 382638 CDS YP_665316.1 109948088 4177570 1398675..1399004 1 NC_008229.1 hypothetical protein 1399004 Hac prophage II orf5 4177570 Hac prophage II orf5 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665316.1 1398675 D 382638 CDS YP_665317.1 109948089 4177571 1399001..1399948 1 NC_008229.1 weak: bacteriophage-related protein; hypothetical protein; hypothetical protein 1399948 Hac prophage II orf6 4177571 Hac prophage II orf6 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665317.1 1399001 D 382638 CDS YP_665318.1 109948090 4177572 1400146..1400415 1 NC_008229.1 hypothetical protein 1400415 Hac prophage II orf7 4177572 Hac prophage II orf7 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665318.1 1400146 D 382638 CDS YP_665319.1 109948091 4177418 1400422..1401573 1 NC_008229.1 hypothetical protein CUP0976,Campylobacter upsaliensis strain RM3195,NCBI entry: 11-JAN-2005; High confidence in function and specificity; hypothetical protein 1401573 Hac prophage II orf8 4177418 Hac prophage II orf8 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665319.1 1400422 D 382638 CDS YP_665320.1 109948092 4177419 1401586..1403157 1 NC_008229.1 DNA primase DnaG (605) [Campylobacter jejuni RM1221, note: N-terminal fragment,Fouts et al. Major structural differences and novel potential virulence,mechanisms from the genomes of multiple Campylobacter species,(er) PLoS Biol. 3 (1), doi 10.1371/journal.pbio.0030040 (2005); High confidence in function and specificity; DNA primase DNA G 1403157 Hac prophage II orf9 4177419 Hac prophage II orf9 Helicobacter acinonychis str. Sheeba DNA primase DNA G YP_665320.1 1401586 D 382638 CDS YP_665321.1 109948093 4177583 1403391..1404983 1 NC_008229.1 hypothetical protein 1404983 Hac prophage II orf10 4177583 Hac prophage II orf10 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665321.1 1403391 D 382638 CDS YP_665322.1 109948094 4177584 1405053..1410272 1 NC_008229.1 mosaic structure gene,CUP0956-like hypothetical protein, N-terminal,Campylobacter upsaliensis strain RM3195, gene: CUP0956 (1000),Fouts et al. Major structural differences and novel potential virulence,mechanisms from the genomes of multiple Campylobacter species,PLoS Biol. 3 (1), (2005),HP1116 C-terminal (957),jhp1044 C-terminal (1154); hypothetical protein; hypothetical protein 1410272 Hac prophage II orf11 4177584 Hac prophage II orf11 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665322.1 1405053 D 382638 CDS YP_665323.1 109948095 4177585 1410338..1411588 1 NC_008229.1 hypothetical protein 1411588 Hac prophage II orf12 4177585 Hac prophage II orf12 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665323.1 1410338 D 382638 CDS YP_665324.1 109948096 4177586 1411585..1412157 1 NC_008229.1 hypothetical protein 1412157 Hac prophage II orf13 4177586 Hac prophage II orf13 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665324.1 1411585 D 382638 CDS YP_665325.1 109948097 4177587 1412167..1412562 1 NC_008229.1 hypothetical protein 1412562 Hac prophage II orf14 4177587 Hac prophage II orf14 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665325.1 1412167 D 382638 CDS YP_665326.1 109948098 4177588 1412559..1413146 1 NC_008229.1 hypothetical protein 1413146 Hac prophage II orf15 4177588 Hac prophage II orf15 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665326.1 1412559 D 382638 CDS YP_665327.1 109948099 4177589 1413383..1413931 1 NC_008229.1 note: syntenic region Hac1620-Hac1621; CUP0940(weak)-CUP0939; hypothetical protein; hypothetical protein 1413931 Hac prophage II orf16 4177589 Hac prophage II orf16 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665327.1 1413383 D 382638 CDS YP_665328.1 109948100 4177590 1413941..1415083 1 NC_008229.1 hypothetical protein 1415083 Hac prophage II orf17 4177590 Hac prophage II orf17 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665328.1 1413941 D 382638 CDS YP_665329.1 109948101 4177591 1415098..1415457 1 NC_008229.1 hypothetical protein 1415457 Hac prophage II orf18 4177591 Hac prophage II orf18 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665329.1 1415098 D 382638 CDS YP_665330.1 109948102 4177553 1415467..1415898 1 NC_008229.1 hypothetical protein 1415898 Hac prophage II orf19 4177553 Hac prophage II orf19 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665330.1 1415467 D 382638 CDS YP_665331.1 109948103 4177555 1415965..1417767 1 NC_008229.1 mosaic structure gene, phage origin,conserved hypothetical protein ,mosaic structure gene,,CUP1551 (271), N-terminal, e-51,CUP0957 (304),C-terminal, e-53 [Campylobacter upsaliensis RM3195],Fouts et al. Major structural differences and novel potential virulence,mechanisms from the genomes of multiple Campylobacter species,PLoS Biol. 3 (1),(2005),Burkholderia cepacia phage Bcep22 gene gp50 , phage TerL (776), e-14, no mid region Summer,E.J., Cordova,M., Parkinson,B.C., Fuller,A.C.,Kitsopoulos,K., Parks,B., Rambo,L., Rothwell,S.,Mebane,L.M., Carlile,T.M., No,E.G., Gonzalez,C.M. and Young,R.F.,Complete nucleotide sequence of Bcep22, a bacteriophage isolated,from soil samples and specific for Burkholderia cepacia genomovar,III, Unpublished; hypothetical protein; hypothetical protein 1417767 Hac prophage II orf20 4177555 Hac prophage II orf20 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665331.1 1415965 D 382638 CDS YP_665332.1 109948104 4177556 1417781..1419334 1 NC_008229.1 phage-related CUP0950-like protein 1419334 Hac prophage II orf21 4177556 Hac prophage II orf21 Helicobacter acinonychis str. Sheeba phage-related CUP0950-like protein YP_665332.1 1417781 D 382638 CDS YP_665333.1 109948105 4177557 1419337..1419516 1 NC_008229.1 hypothetical protein 1419516 Hac prophage II orf22 4177557 Hac prophage II orf22 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665333.1 1419337 D 382638 CDS YP_665334.1 109948106 4177558 1419529..1419732 1 NC_008229.1 hypothetical protein 1419732 Hac prophage II orf23 4177558 Hac prophage II orf23 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665334.1 1419529 D 382638 CDS YP_665335.1 109948107 4177559 1419737..1420072 1 NC_008229.1 hypothetical protein 1420072 Hac prophage II orf24 4177559 Hac prophage II orf24 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665335.1 1419737 D 382638 CDS YP_665336.1 109948108 4177560 1420069..1420290 1 NC_008229.1 hypothetical protein 1420290 Hac prophage II orf25 4177560 Hac prophage II orf25 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665336.1 1420069 D 382638 CDS YP_665337.1 109948109 4177561 1420340..1420885 1 NC_008229.1 hypothetical protein 1420885 Hac prophage II orf26 4177561 Hac prophage II orf26 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665337.1 1420340 D 382638 CDS YP_665338.1 109948110 4177562 1420887..1421672 1 NC_008229.1 Campylobacter upsaliensis RM3195 CUP0941 (248) e-08,Fouts et al. Major structural differences and novel potential virulence,mechanisms from the genomes of multiple Campylobacter species,PLoS Biol. 3 (1), (2005); hypothetical protein; hypothetical protein 1421672 Hac prophage II orf27 4177562 Hac prophage II orf27 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665338.1 1420887 D 382638 CDS YP_665339.1 109948111 4177563 1421677..1422219 1 NC_008229.1 hypothetical protein 1422219 Hac prophage II orf28 4177563 Hac prophage II orf28 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665339.1 1421677 D 382638 CDS YP_665340.1 109948112 4177564 1422258..1422545 1 NC_008229.1 hypothetical protein 1422545 Hac prophage II orf29 4177564 Hac prophage II orf29 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665340.1 1422258 D 382638 CDS YP_665341.1 109948113 4177566 1422604..1423488 1 NC_008229.1 hypothetical protein 1423488 Hac prophage II orf30 4177566 Hac prophage II orf30 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665341.1 1422604 D 382638 CDS YP_665342.1 109948114 4177567 1423498..1424343 1 NC_008229.1 hypothetical protein 1424343 Hac prophage II orf31 4177567 Hac prophage II orf31 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665342.1 1423498 D 382638 CDS YP_665343.1 109948115 4177568 1424343..1425173 1 NC_008229.1 weak CUP1445, CUP0949, CUP0949, CUP1445 e-03; hypothetical protein; hypothetical protein 1425173 Hac prophage II orf32 4177568 Hac prophage II orf32 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665343.1 1424343 D 382638 CDS YP_665344.1 109948116 4177748 complement(1425609..1426748) 1 NC_008229.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1426748 pyrA 4177748 pyrA Helicobacter acinonychis str. Sheeba carbamoyl phosphate synthase small subunit YP_665344.1 1425609 R 382638 CDS YP_665345.1 109948117 4177351 complement(1426748..1427299) 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 1427299 4177351 Hac_1639 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665345.1 1426748 R 382638 CDS YP_665346.1 109948118 4177352 complement(1427396..1428640) 1 NC_008229.1 conserved hypothetical protein; integral membrane protein 1428640 4177352 Hac_1640 Helicobacter acinonychis str. Sheeba integral membrane protein YP_665346.1 1427396 R 382638 CDS YP_665347.1 109948119 4177353 complement(1428631..1429539) 1 NC_008229.1 (O25832) Hypothetical transport protein HP1234(O25832) Hypothetical transport protein HP1234; Specificity unclear; membrane transport protein 1429539 4177353 Hac_1641 Helicobacter acinonychis str. Sheeba membrane transport protein YP_665347.1 1428631 R 382638 CDS YP_665348.1 109948120 4177354 1429735..1430196 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 1430196 4177354 Hac_1642 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665348.1 1429735 D 382638 CDS YP_665349.1 109948121 4177513 complement(1430294..1431436) 1 NC_008229.1 (P73248) Dihydropteroate synthase (EC 2.5.1.15) (DHPS) (Dihydropteroate pyrophosphorylase)(P73248) Dihydropteroate synthase (EC 2.5.1.15) (DHPS) (Dihydropteroate pyrophosphorylase); High confidence in function and specificity; dihydropteroate synthase 1431436 folP 4177513 folP Helicobacter acinonychis str. Sheeba dihydropteroate synthase YP_665349.1 1430294 R 382638 CDS YP_665350.1 109948122 4176873 complement(1431436..1432089) 1 NC_008229.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1432089 holB 4176873 holB Helicobacter acinonychis str. Sheeba DNA polymerase III subunit delta' YP_665350.1 1431436 R 382638 CDS YP_665351.1 109948123 4177355 complement(1432086..1432628) 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 1432628 4177355 Hac_1645 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665351.1 1432086 R 382638 CDS YP_665352.1 109948124 4177629 complement(1432625..1433842) 1 NC_008229.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1433842 lysC 4177629 lysC Helicobacter acinonychis str. Sheeba aspartate kinase YP_665352.1 1432625 R 382638 CDS YP_665353.1 109948125 4177451 complement(1433836..1434309) 1 NC_008229.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1434309 nudA 4177451 nudA Helicobacter acinonychis str. Sheeba dinucleoside polyphosphate hydrolase YP_665353.1 1433836 R 382638 CDS YP_665354.1 109948126 4177356 complement(1434467..1434757) 1 NC_008229.1 High confidence in function and specificity; cytochrome c-553 1434757 4177356 Hac_1648 Helicobacter acinonychis str. Sheeba cytochrome c-553 YP_665354.1 1434467 R 382638 CDS YP_665355.1 109948127 4177430 1434836..1435888 1 NC_008229.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1435888 hemN 4177430 hemN Helicobacter acinonychis str. Sheeba coproporphyrinogen III oxidase YP_665355.1 1434836 D 382638 CDS YP_665356.1 109948128 4176398 complement(1435925..1439029) 1 NC_008229.1 High confidence in function and specificity; cation efflux system protein 1439029 czcA 4176398 czcA Helicobacter acinonychis str. Sheeba cation efflux system protein YP_665356.1 1435925 R 382638 CDS YP_665357.1 109948129 4177357 complement(1439032..1440030) 1 NC_008229.1 High confidence in function and specificity; cation efflux system protein 1440030 4177357 Hac_1651 Helicobacter acinonychis str. Sheeba cation efflux system protein YP_665357.1 1439032 R 382638 CDS YP_665358.1 109948130 4176317 complement(1440027..1441271) 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 1441271 4176317 Hac_1652 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665358.1 1440027 R 382638 CDS YP_665359.1 109948131 4176318 complement(1441276..1441653) 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 1441653 4176318 Hac_1653 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665359.1 1441276 R 382638 CDS YP_665360.1 109948132 4177039 complement(1442172..1443245) 1 NC_008229.1 hypothetical protein 1443245 fragment 2 4177039 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665360.1 1442172 R 382638 CDS YP_665361.1 109948133 4177059 complement(1443214..1444566) 1 NC_008229.1 Probably together with 1655 part of a former gene. Contains real frameshift between 1655 and 1656.; hypothetical protein; hypothetical protein 1444566 fragment 1 4177059 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665361.1 1443214 R 382638 CDS YP_665362.1 109948134 4177745 complement(1444675..1445556) 1 NC_008229.1 (P37051) Formyltetrahydrofolate deformylase (EC 3.5.1.10) (Formyl-FH(4) hydrolase)(P37051) Formyltetrahydrofolate deformylase (EC 3.5.1.10) (Formyl-FH(4) hydrolase); High confidence in function and specificity; formyltetrahydrofolate deformylase 1445556 purU 4177745 purU Helicobacter acinonychis str. Sheeba formyltetrahydrofolate deformylase YP_665362.1 1444675 R 382638 CDS YP_665363.1 109948135 4177737 complement(1445558..1446436) 1 NC_008229.1 (Q55682) protease slr0021 (EC 3.4.21.-)(Q55682) protease slr0021 (EC 3.4.21.-); High confidence in function and specificity; protease IV 1446436 pspA 4177737 pspA Helicobacter acinonychis str. Sheeba protease IV YP_665363.1 1445558 R 382638 CDS YP_665364.1 109948136 4176319 1446506..1446745 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 1446745 4176319 Hac_1659 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665364.1 1446506 D 382638 CDS YP_665365.1 109948137 4177661 1446878..1447087 1 NC_008229.1 hypothetical protein 1447087 N-terminal fragment 4177661 N-terminal fragment Helicobacter acinonychis str. Sheeba hypothetical protein YP_665365.1 1446878 D 382638 CDS YP_665366.1 109948138 4176529 complement(1447806..1449647) 1 NC_008229.1 High confidence in function and specificity; cell division protein FtsI 1449647 ftsI, pbpB 4176529 ftsI, pbpB Helicobacter acinonychis str. Sheeba cell division protein FtsI YP_665366.1 1447806 R 382638 CDS YP_665367.1 109948139 4177258 complement(1449805..1450134) 1 NC_008229.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1450134 fliE 4177258 fliE Helicobacter acinonychis str. Sheeba flagellar hook-basal body protein FliE YP_665367.1 1449805 R 382638 CDS YP_665368.1 109948140 4177242 complement(1450242..1450727) 1 NC_008229.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1450727 flgC 4177242 flgC Helicobacter acinonychis str. Sheeba flagellar basal body rod protein FlgC YP_665368.1 1450242 R 382638 CDS YP_665369.1 109948141 4177241 complement(1450741..1451163) 1 NC_008229.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1451163 flgB 4177241 flgB Helicobacter acinonychis str. Sheeba flagellar basal body rod protein FlgB YP_665369.1 1450741 R 382638 CDS YP_665370.1 109948142 4177005 1451423..1452529 1 NC_008229.1 High confidence in function and specificity; cell division protein ftsW 1452529 ftsW 4177005 ftsW Helicobacter acinonychis str. Sheeba cell division protein ftsW YP_665370.1 1451423 D 382638 CDS YP_665371.1 109948143 4176597 complement(1452554..1453549) 1 NC_008229.1 iron(III) ABC transporter periplasmic iron-binding protein 1453549 ceuE 4176597 ceuE Helicobacter acinonychis str. Sheeba iron(III) ABC transporter periplasmic iron-binding protein YP_665371.1 1452554 R 382638 CDS YP_665372.1 109948144 4177702 1453784..1454380 1 NC_008229.1 (P21762) Probable peroxiredoxin (26 kDa antigen)(P21762) Probable peroxiredoxin (26 kDa antigen); High confidence in function and specificity; alkyl hydroperoxide reductase 1454380 ahpC 4177702 ahpC Helicobacter acinonychis str. Sheeba alkyl hydroperoxide reductase YP_665372.1 1453784 D 382638 CDS YP_665373.1 109948145 4176320 1454520..1455326 1 NC_008229.1 (Q8X8V9) D-methionine-binding lipoprotein metQ precursor(Q8X8V9) D-methionine-binding lipoprotein metQ precursor; High confidence in function and specificity; ABC transporter substrate-binding protein 1455326 4176320 Hac_1671 Helicobacter acinonychis str. Sheeba ABC transporter substrate-binding protein YP_665373.1 1454520 D 382638 CDS YP_665374.1 109948146 4176739 complement(1455438..1457180) 1 NC_008229.1 (P44469) Penicillin-binding protein 2 (PBP-2)(P44469) Penicillin-binding protein 2 (PBP-2); High confidence in function and specificity; penicillin-binding protein 1457180 pbp2 4176739 pbp2 Helicobacter acinonychis str. Sheeba penicillin-binding protein YP_665374.1 1455438 R 382638 CDS YP_665375.1 109948147 4176321 complement(1457185..1457628) 1 NC_008229.1 hypothetical protein 1457628 4176321 Hac_1673 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665375.1 1457185 R 382638 CDS YP_665376.1 109948148 4176322 complement(1457640..1458266) 1 NC_008229.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1458266 engB 4176322 engB Helicobacter acinonychis str. Sheeba ribosome biogenesis GTP-binding protein YsxC YP_665376.1 1457640 R 382638 CDS YP_665377.1 109948149 4176323 complement(1458263..1458820) 1 NC_008229.1 (P06473) Glycoprotein B precursor(P06473) Glycoprotein B precursor; conserved hypothetical protein; hypothetical protein 1458820 4176323 Hac_1675 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665377.1 1458263 R 382638 CDS YP_665378.1 109948150 4176324 complement(1458820..1459413) 1 NC_008229.1 (P39631) Spore coat polysaccharide biosynthesis protein spsK(P39631) Spore coat polysaccharide biosynthesis protein spsK; conserved hypothetical protein; hypothetical protein 1459413 4176324 Hac_1676 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665378.1 1458820 R 382638 CDS YP_665379.1 109948151 4176325 complement(1459388..1459882) 1 NC_008229.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) (KDO 8-P phosphatase)(Q8ZLS0) 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) (KDO 8-P phosphatase); High confidence in function and specificity; hypothetical protein 1459882 4176325 Hac_1677 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665379.1 1459388 R 382638 CDS YP_665380.1 109948152 4177092 complement(1459879..1460826) 1 NC_008229.1 RlpA-like lipoprotein precursor; High confidence in function and specificity; rare lipoprotein A 1460826 rlpA 4177092 rlpA Helicobacter acinonychis str. Sheeba rare lipoprotein A YP_665380.1 1459879 R 382638 CDS YP_665381.1 109948153 4177140 complement(1460826..1461932) 1 NC_008229.1 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) (Murein hydrolase D) (Regulatory protein dniR)Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) (Murein hydrolase D) (Regulatory protein dniR); High confidence in function and specificity; regulatory protein DniR 1461932 dniR 4177140 dniR Helicobacter acinonychis str. Sheeba regulatory protein DniR YP_665381.1 1460826 R 382638 CDS YP_665382.1 109948154 4176326 complement(1462024..1462788) 1 NC_008229.1 (P37545) deoxyribonuclease yabD (EC 3.1.21.-)(P37545) deoxyribonuclease yabD (EC 3.1.21.-); High confidence in function and specificity; hypothetical protein 1462788 4176326 Hac_1680 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665382.1 1462024 R 382638 CDS YP_665383.1 109948155 4177088 1462861..1463481 1 NC_008229.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1463481 ribC 4177088 ribC Helicobacter acinonychis str. Sheeba riboflavin synthase subunit alpha YP_665383.1 1462861 D 382638 CDS YP_665384.1 109948156 4176327 1463482..1463754 1 NC_008229.1 Flagellar biosynthetic protein flhB; Function unclear; flagellar biosynthesis protein 1463754 4176327 Hac_1682 Helicobacter acinonychis str. Sheeba flagellar biosynthesis protein YP_665384.1 1463482 D 382638 CDS YP_665385.1 109948157 4176217 1463769..1464752 1 NC_008229.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1464752 metN 4176217 metN Helicobacter acinonychis str. Sheeba DL-methionine transporter ATP-binding subunit YP_665385.1 1463769 D 382638 CDS YP_665386.1 109948158 4176643 1464754..1465401 1 NC_008229.1 High confidence in function and specificity; ABC transporter permease 1465401 yaeE 4176643 yaeE Helicobacter acinonychis str. Sheeba ABC transporter permease YP_665386.1 1464754 D 382638 CDS YP_665387.1 109948159 4176328 1465765..1467342 1 NC_008229.1 attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria; lipid A phosphoethanolamine transferase 1467342 4176328 Hac_1686 Helicobacter acinonychis str. Sheeba lipid A phosphoethanolamine transferase YP_665387.1 1465765 D 382638 CDS YP_665388.1 109948160 4176329 1467348..1467920 1 NC_008229.1 inner membrane enzyme; removes 1-phosphate groups from a number of lipid A precursors which provides a point of attachment for to moieties such as phosphoethanolamine which is attached by HP0022; lipid A 1-phosphatase 1467920 4176329 Hac_1687 Helicobacter acinonychis str. Sheeba lipid A 1-phosphatase YP_665388.1 1467348 D 382638 CDS YP_665389.1 109948161 4177449 complement(1467927..1469144) 1 NC_008229.1 Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP decarboxylase); Function unclear; carboxynorspermidine decarboxylase 1469144 nspC 4177449 nspC Helicobacter acinonychis str. Sheeba carboxynorspermidine decarboxylase YP_665389.1 1467927 R 382638 CDS YP_665390.1 109948162 4176602 complement(1469141..1470106) 1 NC_008229.1 High confidence in function and specificity; chemotaxis signal transduction protein CheV 1470106 cheV 4176602 cheV Helicobacter acinonychis str. Sheeba chemotaxis signal transduction protein CheV YP_665390.1 1469141 R 382638 CDS YP_665391.1 109948163 4176330 complement(1470206..1471639) 1 NC_008229.1 hypothetical protein 1471639 4176330 Hac_1690 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665391.1 1470206 R 382638 CDS YP_665392.1 109948164 4176634 complement(1471827..1474190) 1 NC_008229.1 type IV secretory pathway component VirB4 1474190 virB4 4176634 virB4 Helicobacter acinonychis str. Sheeba type IV secretory pathway component VirB4 YP_665392.1 1471827 R 382638 CDS YP_665393.1 109948165 4176331 complement(1474192..1474455) 1 NC_008229.1 hypothetical protein 1474455 4176331 Hac_1692 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665393.1 1474192 R 382638 CDS YP_665394.1 109948166 4176332 complement(1474455..1474736) 1 NC_008229.1 hypothetical protein 1474736 4176332 Hac_1693 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665394.1 1474455 R 382638 CDS YP_665395.1 109948167 4176333 complement(1474869..1475696) 1 NC_008229.1 hypothetical protein 1475696 4176333 Hac_1694 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665395.1 1474869 R 382638 CDS YP_665396.1 109948168 4177491 complement(1475787..1476839) 1 NC_008229.1 Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)(O53271) Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61); Specificity unclear; tRNA methyltransferase 1476839 trmU 4177491 trmU Helicobacter acinonychis str. Sheeba tRNA methyltransferase YP_665396.1 1475787 R 382638 CDS YP_665397.1 109948169 4177133 complement(1476836..1478515) 1 NC_008229.1 synthesizes RNA primers at the replication forks; DNA primase 1478515 dnaG 4177133 dnaG Helicobacter acinonychis str. Sheeba DNA primase YP_665397.1 1476836 R 382638 CDS YP_665398.1 109948170 4177273 1478795..1479151 1 NC_008229.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1479151 groES 4177273 groES Helicobacter acinonychis str. Sheeba co-chaperonin GroES YP_665398.1 1478795 D 382638 CDS YP_665399.1 109948171 4177272 1479174..1480814 1 NC_008229.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1480814 groEL 4177272 groEL Helicobacter acinonychis str. Sheeba chaperonin GroEL YP_665399.1 1479174 D 382638 CDS YP_665400.1 109948172 4176334 1480996..1481226 1 NC_008229.1 note: prediction cause plasticity zone with synteny disruption,blastn omp match; hypothetical protein; hypothetical protein 1481226 4176334 Hac_1699 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665400.1 1480996 D 382638 CDS YP_665401.1 109948173 4176585 1481490..1481858 1 NC_008229.1 hypothetical protein 1481858 omp31 fragment 1 4176585 omp31 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665401.1 1481490 D 382638 CDS YP_665402.1 109948174 4176586 1482474..1482815 1 NC_008229.1 hypothetical protein 1482815 omp31 fragment 2 4176586 omp31 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665402.1 1482474 D 382638 CDS YP_665403.1 109948175 4176587 1482773..1482883 1 NC_008229.1 hypothetical protein 1482883 omp31 fragment 3 4176587 omp31 fragment 3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665403.1 1482773 D 382638 CDS YP_665404.1 109948176 4176335 complement(1483084..1483641) 1 NC_008229.1 Function unclear; hypothetical protein 1483641 4176335 Hac_1707 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665404.1 1483084 R 382638 CDS YP_665405.1 109948177 4176491 complement(1483875..1484366) 1 NC_008229.1 hypothetical protein 1484366 4176491 Hac_1708 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665405.1 1483875 R 382638 CDS YP_665406.1 109948178 4176492 complement(1484406..1484726) 1 NC_008229.1 hypothetical protein 1484726 4176492 Hac_1709 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665406.1 1484406 R 382638 CDS YP_665407.1 109948179 4176493 1484851..1485066 1 NC_008229.1 hypothetical protein 1485066 4176493 Hac_1711 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665407.1 1484851 D 382638 CDS YP_665408.1 109948180 4176736 1485333..1485989 1 NC_008229.1 chromosome partitioning protein ParA 1485989 parA 4176736 parA Helicobacter acinonychis str. Sheeba chromosome partitioning protein ParA YP_665408.1 1485333 D 382638 CDS YP_665409.1 109948181 4176494 1486068..1486352 1 NC_008229.1 hypothetical protein 1486352 4176494 Hac_1713 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665409.1 1486068 D 382638 CDS YP_665410.1 109948182 4176495 1486396..1487574 1 NC_008229.1 hypothetical protein 1487574 4176495 Hac_1714 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665410.1 1486396 D 382638 CDS YP_665411.1 109948183 4176496 complement(1487599..1487922) 1 NC_008229.1 High confidence in function and specificity; hypothetical protein 1487922 4176496 Hac_1715 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665411.1 1487599 R 382638 CDS YP_665412.1 109948184 4176497 1488398..1489006 1 NC_008229.1 Function unclear; metal-dependent hydrolase 1489006 4176497 Hac_1716 Helicobacter acinonychis str. Sheeba metal-dependent hydrolase YP_665412.1 1488398 D 382638 CDS YP_665413.1 109948185 4177679 complement(1489016..1490038) 1 NC_008229.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1490038 ilvE 4177679 ilvE Helicobacter acinonychis str. Sheeba branched-chain amino acid aminotransferase YP_665413.1 1489016 R 382638 CDS YP_665414.1 109948186 4176588 complement(1490358..1491104) 1 NC_008229.1 outer membrane protein 32 1491104 omp32 4176588 omp32 Helicobacter acinonychis str. Sheeba outer membrane protein 32 YP_665414.1 1490358 R 382638 CDS YP_665415.1 109948187 4176788 complement(1491205..1493868) 1 NC_008229.1 High confidence in function and specificity; DNA polymerase I 1493868 polA 4176788 polA Helicobacter acinonychis str. Sheeba DNA polymerase I YP_665415.1 1491205 R 382638 CDS YP_665416.1 109948188 4176498 1494176..1496500 1 NC_008229.1 High confidence in function and specificity; type III restriction-modification system 1496500 4176498 Hac_1720 Helicobacter acinonychis str. Sheeba type III restriction-modification system YP_665416.1 1494176 D 382638 CDS YP_665417.1 109948189 4176713 1496494..1498422 1 NC_008229.1 High confidence in function and specificity; type III restriction-modification system: methyltransferase 1498422 mod 4176713 mod Helicobacter acinonychis str. Sheeba type III restriction-modification system: methyltransferase YP_665417.1 1496494 D 382638 CDS YP_665418.1 109948190 4176499 complement(1498632..1499216) 1 NC_008229.1 COG3187, HslJ, Heat shock protein [Posttranslational modification, protein turnover,chaperones],pfam03724, META, Domain of unknown function (306). Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.; hypothetical protein; motility protein 1499216 4176499 Hac_1723 Helicobacter acinonychis str. Sheeba motility protein YP_665418.1 1498632 R 382638 CDS YP_665419.1 109948191 4176500 complement(1499223..1499894) 1 NC_008229.1 hypothetical protein 1499894 4176500 Hac_1724 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665419.1 1499223 R 382638 CDS YP_665420.1 109948192 4176501 complement(1499897..1500712) 1 NC_008229.1 ABC transporter substrate-binding protein 1500712 4176501 Hac_1725 Helicobacter acinonychis str. Sheeba ABC transporter substrate-binding protein YP_665420.1 1499897 R 382638 CDS YP_665421.1 109948193 4176502 complement(1500697..1501482) 1 NC_008229.1 High confidence in function and specificity; ABC transporter ATP-binding protein 1501482 4176502 Hac_1726 Helicobacter acinonychis str. Sheeba ABC transporter ATP-binding protein YP_665421.1 1500697 R 382638 CDS YP_665422.1 109948194 4176503 complement(1501482..1502615) 1 NC_008229.1 Function unclear; ABC transporter permease 1502615 4176503 Hac_1727 Helicobacter acinonychis str. Sheeba ABC transporter permease YP_665422.1 1501482 R 382638 CDS YP_665423.1 109948195 4176504 1502768..1503424 1 NC_008229.1 DUF864(Sanger) Helicobacter pylori protein of unknow; hypothetical protein; outer membrane protein 1503424 4176504 Hac_1728 Helicobacter acinonychis str. Sheeba outer membrane protein YP_665423.1 1502768 D 382638 CDS YP_665424.1 109948196 4177066 complement(1503455..1504273) 1 NC_008229.1 High confidence in function and specificity; tRNA processing ribonuclease BN 1504273 rbn 4177066 rbn Helicobacter acinonychis str. Sheeba tRNA processing ribonuclease BN YP_665424.1 1503455 R 382638 CDS YP_665425.1 109948197 4177114 complement(1504339..1505187) 1 NC_008229.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1505187 bioB 4177114 bioB Helicobacter acinonychis str. Sheeba biotin synthase YP_665425.1 1504339 R 382638 CDS YP_665426.1 109948198 4177111 complement(1505314..1506510) 1 NC_008229.1 High confidence in function and specificity; type IIS restriction enzyme protein 1506510 BCGIB 4177111 BCGIB Helicobacter acinonychis str. Sheeba type IIS restriction enzyme protein YP_665426.1 1505314 R 382638 CDS YP_665427.1 109948199 4176714 complement(1506507..1508546) 1 NC_008229.1 High confidence in function and specificity; type II restriction modification enzyme methyltransferase 1508546 mod 4176714 mod Helicobacter acinonychis str. Sheeba type II restriction modification enzyme methyltransferase YP_665427.1 1506507 R 382638 CDS YP_665428.1 109948200 4176505 complement(1508579..1509154) 1 NC_008229.1 Function unclear; hypothetical protein 1509154 4176505 Hac_1733 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665428.1 1508579 R 382638 CDS YP_665429.1 109948201 4177484 complement(1509142..1509717) 1 NC_008229.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1509717 tmk 4177484 tmk Helicobacter acinonychis str. Sheeba thymidylate kinase YP_665429.1 1509142 R 382638 CDS YP_665430.1 109948202 4176135 complement(1509719..1510192) 1 NC_008229.1 kdtB; Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1510192 coaD 4176135 coaD Helicobacter acinonychis str. Sheeba phosphopantetheine adenylyltransferase YP_665430.1 1509719 R 382638 CDS YP_665431.1 109948203 4176681 complement(1510192..1510755) 1 NC_008229.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1510755 ubiD 4176681 ubiD Helicobacter acinonychis str. Sheeba 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_665431.1 1510192 R 382638 CDS YP_665432.1 109948204 4177240 complement(1510765..1511421) 1 NC_008229.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1511421 flgA 4177240 flgA Helicobacter acinonychis str. Sheeba flagellar basal body P-ring biosynthesis protein FlgA YP_665432.1 1510765 R 382638 CDS YP_665433.1 109948205 4176697 complement(1511418..1513463) 1 NC_008229.1 High confidence in function and specificity; ATP-dependent DNA helicase 1513463 uvrD 4176697 uvrD Helicobacter acinonychis str. Sheeba ATP-dependent DNA helicase YP_665433.1 1511418 R 382638 CDS YP_665434.1 109948206 4176506 complement(1513463..1516009) 1 NC_008229.1 Function unclear; hypothetical protein 1516009 4176506 Hac_1739 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665434.1 1513463 R 382638 CDS YP_665435.1 109948207 4177178 complement(1516019..1517266) 1 NC_008229.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1517266 serS 4177178 serS Helicobacter acinonychis str. Sheeba seryl-tRNA synthetase YP_665435.1 1516019 R 382638 CDS YP_665436.1 109948208 4176507 complement(1517259..1518059) 1 NC_008229.1 Function unclear; hypothetical protein 1518059 4176507 Hac_1741 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665436.1 1517259 R 382638 CDS YP_665437.1 109948209 4176642 complement(1518063..1518314) 1 NC_008229.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1518314 xseB 4176642 xseB Helicobacter acinonychis str. Sheeba exodeoxyribonuclease VII small subunit YP_665437.1 1518063 R 382638 CDS YP_665438.1 109948210 4176682 complement(1518326..1519066) 1 NC_008229.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1519066 ubiE 4176682 ubiE Helicobacter acinonychis str. Sheeba ubiquinone/menaquinone biosynthesis methyltransferase YP_665438.1 1518326 R 382638 CDS YP_665439.1 109948211 4176508 complement(1519076..1519528) 1 NC_008229.1 Specificity unclear; hypothetical protein 1519528 4176508 Hac_1744 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665439.1 1519076 R 382638 CDS YP_665440.1 109948212 4176509 complement(1519534..1520106) 1 NC_008229.1 hypothetical protein 1520106 4176509 Hac_1745 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665440.1 1519534 R 382638 CDS YP_665441.1 109948213 4176510 complement(1520093..1521223) 1 NC_008229.1 Function unclear; ABC transporter permease 1521223 4176510 Hac_1746 Helicobacter acinonychis str. Sheeba ABC transporter permease YP_665441.1 1520093 R 382638 CDS YP_665442.1 109948214 4177632 complement(1521220..1522317) 1 NC_008229.1 ABC transporter permease 1522317 4177632 Hac_1747 Helicobacter acinonychis str. Sheeba ABC transporter permease YP_665442.1 1521220 R 382638 CDS YP_665443.1 109948215 4177633 complement(1522328..1523332) 1 NC_008229.1 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]; Specificity unclear; hypothetical protein 1523332 4177633 Hac_1748 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665443.1 1522328 R 382638 CDS YP_665444.1 109948216 4177634 complement(1523344..1524891) 1 NC_008229.1 hypothetical protein 1524891 4177634 Hac_1749 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665444.1 1523344 R 382638 CDS YP_665445.1 109948217 4177635 complement(1524893..1526212) 1 NC_008229.1 (O07589) Hypothetical protein yhdT(O07589) Hypothetical protein yhdT(O07589) Hypothetical protein yhdT(O07589) Hypothetical protein yhdT(O07589) Hypothetical protein yhdT(O07589) Hypothetical protein yhdT(O07589) Hypothetical protein yhdT(O07589) Hypothetical protein yhdT; hypothetical protein; hemolysin domain-containing protein 1526212 4177635 Hac_1750 Helicobacter acinonychis str. Sheeba hemolysin domain-containing protein YP_665445.1 1524893 R 382638 CDS YP_665446.1 109948218 4176781 complement(1526322..1527923) 1 NC_008229.1 High confidence in function and specificity; phosphate permease 1527923 pit 4176781 pit Helicobacter acinonychis str. Sheeba phosphate permease YP_665446.1 1526322 R 382638 CDS YP_665447.1 109948219 4177636 1528061..1528330 1 NC_008229.1 Thioredoxin like.Thioredoxin like.; family membership; hypothetical protein 1528330 4177636 Hac_1752 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665447.1 1528061 D 382638 CDS YP_665448.1 109948220 4177637 1528341..1528952 1 NC_008229.1 conserved hypothetical protein; hypothetical protein 1528952 4177637 Hac_1753 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665448.1 1528341 D 382638 CDS YP_665449.1 109948221 4177654 1528956..1530299 1 NC_008229.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1530299 murE 4177654 murE Helicobacter acinonychis str. Sheeba UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_665449.1 1528956 D 382638 CDS YP_665450.1 109948222 4177467 1530303..1531253 1 NC_008229.1 Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase 1531253 tal 4177467 tal Helicobacter acinonychis str. Sheeba transaldolase YP_665450.1 1530303 D 382638 CDS YP_665451.1 109948223 4176855 1531308..1531844 1 NC_008229.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1531844 rplY 4176855 rplY Helicobacter acinonychis str. Sheeba 50S ribosomal protein L25/general stress protein Ctc YP_665451.1 1531308 D 382638 CDS YP_665452.1 109948224 4177740 1531852..1532412 1 NC_008229.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1532412 pth 4177740 pth Helicobacter acinonychis str. Sheeba peptidyl-tRNA hydrolase YP_665452.1 1531852 D 382638 CDS YP_665453.1 109948225 4177638 1532422..1533489 1 NC_008229.1 Membrane protein.Membrane protein.; conserved hypothetical protein; hypothetical protein 1533489 4177638 Hac_1758 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665453.1 1532422 D 382638 CDS YP_665454.1 109948226 4177639 1533672..1533896 1 NC_008229.1 hypothetical protein 1533896 4177639 Hac_1759 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665454.1 1533672 D 382638 CDS YP_665455.1 109948227 4176829 complement(1534413..1535363) 1 NC_008229.1 (P39138) Arginase (EC 3.5.3.1)(P39138) Arginase (EC 3.5.3.1); High confidence in function and specificity; arginase 1535363 rocF 4176829 rocF Helicobacter acinonychis str. Sheeba arginase YP_665455.1 1534413 R 382638 CDS YP_665456.1 109948228 4177640 complement(1535376..1536152) 1 NC_008229.1 Region start changed from 1535987 to 1536152 (165 bases); amino acid permease 1536152 4177640 Hac_1762 Helicobacter acinonychis str. Sheeba amino acid permease YP_665456.1 1535376 R 382638 CDS YP_665457.1 109948229 4177100 complement(1536162..1536605) 1 NC_008229.1 amino acid permease 1536605 rocE fragment 2 4177100 rocE fragment 2 Helicobacter acinonychis str. Sheeba amino acid permease YP_665457.1 1536162 R 382638 CDS YP_665458.1 109948230 4177099 complement(1536593..1536727) 1 NC_008229.1 amino acid permease 1536727 rocE fragment 1 4177099 rocE fragment 1 Helicobacter acinonychis str. Sheeba amino acid permease YP_665458.1 1536593 R 382638 CDS YP_665459.1 109948231 4177706 1536993..1538135 1 NC_008229.1 (Q99TF4) Alanine dehydrogenase 2 (EC 1.4.1.1)(Q99TF4) Alanine dehydrogenase 2 (EC 1.4.1.1); High confidence in function and specificity; hypothetical protein 1538135 ald 4177706 ald Helicobacter acinonychis str. Sheeba hypothetical protein YP_665459.1 1536993 D 382638 CDS YP_665460.1 109948232 4177060 1538383..1538502 1 NC_008229.1 hypothetical protein 1538502 fragment 1 4177060 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665460.1 1538383 D 382638 CDS YP_665461.1 109948233 4177040 1538772..1538939 1 NC_008229.1 Function unclear; hypothetical protein 1538939 fragment 2 4177040 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665461.1 1538772 D 382638 CDS YP_665462.1 109948234 4177061 1538977..1539180 1 NC_008229.1 Function unclear; hypothetical protein 1539180 fragment 1 4177061 fragment 1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665462.1 1538977 D 382638 CDS YP_665463.1 109948235 4177041 1539227..1539406 1 NC_008229.1 Function unclear; hypothetical protein 1539406 fragment 2 4177041 fragment 2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665463.1 1539227 D 382638 CDS YP_665464.1 109948236 4176432 complement(1539690..1540445) 1 NC_008229.1 outer membrane protein 33 1540445 omp33 4176432 omp33 Helicobacter acinonychis str. Sheeba outer membrane protein 33 YP_665464.1 1539690 R 382638 CDS YP_665465.1 109948237 4176555 1540724..1541575 1 NC_008229.1 (O25944) Probable inorganic polyphosphate/ATP-NAD kinase (EC 2.7.1.23) (Poly(P)/ATP NAD kinase)(O25944) Probable inorganic polyphosphate/ATP-NAD kinase (EC 2.7.1.23) (Poly(P)/ATP NAD kinase); High confidence in function and specificity; inorganic polyphosphate/ATP-NAD kinase 1541575 ppnK 4176555 ppnK Helicobacter acinonychis str. Sheeba inorganic polyphosphate/ATP-NAD kinase YP_665465.1 1540724 D 382638 CDS YP_665466.1 109948238 4177071 1541599..1543173 1 NC_008229.1 (Q9ZJ80) DNA repair protein recN (Recombination protein N)(Q9ZJ80) DNA repair protein recN (Recombination protein N); High confidence in function and specificity; DNA repair protein RecN 1543173 recN 4177071 recN Helicobacter acinonychis str. Sheeba DNA repair protein RecN YP_665466.1 1541599 D 382638 CDS YP_665467.1 109948239 4177641 1543170..1544477 1 NC_008229.1 Conserved hypothetical protein. Conserved to HPyl.Conserved hypothetical protein. Conserved to HPyl.; hypothetical protein; fibronectin/fibrinogen-binding protein 1544477 4177641 Hac_1773 Helicobacter acinonychis str. Sheeba fibronectin/fibrinogen-binding protein YP_665467.1 1543170 D 382638 CDS YP_665468.1 109948240 4177642 1544496..1544792 1 NC_008229.1 Conserved hypothetical protein. Conserved to HPyl.Conserved hypothetical protein. Conserved to HPyl.; conserved hypothetical protein; hypothetical protein 1544792 4177642 Hac_1774 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665468.1 1544496 D 382638 CDS YP_665469.1 109948241 4177137 complement(1545571..1546419) 1 NC_008229.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1546419 dnaQ 4177137 dnaQ Helicobacter acinonychis str. Sheeba DNA polymerase III subunit epsilon YP_665469.1 1545571 R 382638 CDS YP_665470.1 109948242 4176831 complement(1546412..1547065) 1 NC_008229.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1547065 rpe 4176831 rpe Helicobacter acinonychis str. Sheeba ribulose-phosphate 3-epimerase YP_665470.1 1546412 R 382638 CDS YP_665471.1 109948243 4177417 1547137..1548009 1 NC_008229.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1548009 fbp 4177417 fbp Helicobacter acinonychis str. Sheeba fructose-1,6-bisphosphatase YP_665471.1 1547137 D 382638 CDS YP_665472.1 109948244 4177643 1548009..1548212 1 NC_008229.1 Conserved hypothetical protein. Conserved to HPyl.Conserved hypothetical protein. Conserved to HPyl.; conserved hypothetical protein; hypothetical protein 1548212 4177643 Hac_1781 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665472.1 1548009 D 382638 CDS YP_665473.1 109948245 4177644 1548227..1549123 1 NC_008229.1 type II DNA methylase protein 1549123 4177644 Hac_1782 Helicobacter acinonychis str. Sheeba type II DNA methylase protein YP_665473.1 1548227 D 382638 CDS YP_665474.1 109948246 4177645 1549128..1549784 1 NC_008229.1 Conserved hypothetical protein. Conservation to HPyl.Conserved hypothetical protein. Conservation to HPyl.; conserved hypothetical protein; hypothetical protein 1549784 4177645 Hac_1783 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665474.1 1549128 D 382638 CDS YP_665475.1 109948247 4177067 complement(1549692..1550180) 1 NC_008229.1 (P44608) tRNA processing ribonuclease BN (EC 3.1.-.-) (RNase BN)(P44608) tRNA processing ribonuclease BN (EC 3.1.-.-) (RNase BN); hypothetical protein; ribonuclease N fragment 1550180 rbn fragment 4177067 rbn fragment Helicobacter acinonychis str. Sheeba ribonuclease N fragment YP_665475.1 1549692 R 382638 CDS YP_665476.1 109948248 4177115 complement(1550246..1550518) 1 NC_008229.1 Fragment of (O25956) Biotin synthase (EC 2.8.1.6) (Biotin synthetase). Only C-terminal part exists.Fragment of (O25956) Biotin synthase (EC 2.8.1.6) (Biotin synthetase). Only C-terminal part exists.; High confidence in function and specificity; biotin synthetase fragment 1550518 bioB fragment 4177115 bioB fragment Helicobacter acinonychis str. Sheeba biotin synthetase fragment YP_665476.1 1550246 R 382638 CDS YP_665477.1 109948249 4177478 complement(1550531..1551157) 1 NC_008229.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 1551157 thyX 4177478 thyX Helicobacter acinonychis str. Sheeba FAD-dependent thymidylate synthase YP_665477.1 1550531 R 382638 CDS YP_665478.1 109948250 4177767 complement(1551184..1552977) 1 NC_008229.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1552977 glmS 4177767 glmS Helicobacter acinonychis str. Sheeba glucosamine--fructose-6-phosphate aminotransferase YP_665478.1 1551184 R 382638 CDS YP_665479.1 109948251 4177646 complement(1552978..1553217) 1 NC_008229.1 (O26059) Hypothetical protein HP1531/JHP1419; hypothetical protein; hypothetical protein 1553217 4177646 Hac_1788 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665479.1 1552978 R 382638 CDS YP_665480.1 109948252 4177741 complement(1553241..1553786) 1 NC_008229.1 (P51105) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase); hypothetical protein; purine nucleoside phosphorylase 1553786 punB 4177741 punB Helicobacter acinonychis str. Sheeba purine nucleoside phosphorylase YP_665480.1 1553241 R 382638 CDS YP_665481.1 109948254 4177775 234..515 1 NC_008230.1 similar to JHP0828; hypothetical protein; hypothetical protein 515 4177775 pHac1_1 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665481.1 234 D 382638 CDS YP_665482.1 109948255 4177776 524..793 1 NC_008230.1 similar to JHP0825; hypothetical protein; hypothetical protein 793 4177776 pHac1_2 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665482.1 524 D 382638 CDS YP_665483.1 109948256 4177777 complement(1041..1151) 1 NC_008230.1 hypothetical protein 1151 4177777 pHac1_3 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665483.1 1041 R 382638 CDS YP_665484.1 109948257 4177778 complement(1329..1538) 1 NC_008230.1 hypothetical protein 1538 4177778 pHac1_4 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665484.1 1329 R 382638 CDS YP_665485.1 109948258 4177779 complement(1568..1684) 1 NC_008230.1 hypothetical protein 1684 4177779 pHac1_5 Helicobacter acinonychis str. Sheeba hypothetical protein YP_665485.1 1568 R 382638 CDS YP_665486.1 109948259 4177780 1854..3476 1 NC_008230.1 replication protein repA,InterPro; Initiator RepB protein; hypothetical protein; replication A protein 3476 repA 4177780 repA Helicobacter acinonychis str. Sheeba replication A protein YP_665486.1 1854 D 382638 CDS