-- dump date   	20140619_112912
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003056844.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_003056845.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_003056846.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_003056847.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15866214, 3049588, 9761692; Product type e : enzyme
YP_003056848.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_003056849.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_003056850.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 18192681, 16322107, 16220040, 16173498, 15918181, 12454856, 11211867; Product type m : membrane component
YP_003056851.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_003056852.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_003056853.1	synthesizes RNA primers at the replication forks
YP_003056854.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003056855.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003056856.1	Evidence 4a : Only in Helicobacter pylori
YP_003056857.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056858.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16428391, 15133060, 12868652, 12668646, 11489125, 10383764, 10066547; Product type t : transporter
YP_003056859.1	Evidence 4a : Only in Helicobacter pylori
YP_003056860.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15664919, 15205568, 15130117, 14631875, 8809743, 8169224, 8169223; Product type r : regulator
YP_003056861.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16009566, 1955861, 16237027; Product type e : enzyme
YP_003056862.1	inner membrane enzyme; removes 1-phosphate groups from a number of lipid A precursors which provides a point of attachment for to moieties such as phosphoethanolamine which is attached by HP0022
YP_003056863.1	attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria
YP_003056864.1	Evidence 4a : Only in Helicobacter pylori
YP_003056865.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 7534278, 7559328, 16322107, 16173498, 15918181, 12454856, 7534278; Product type m : membrane component
YP_003056866.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_003056867.1	[NADP]; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10091606, 2204109, 2682654, 8759844; Product type e : enzyme
YP_003056868.1	Evidence 4b : Only in Helicobacter genus
YP_003056869.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 374977, 9214291, 7669755, 10089457, 99081548, 9865950; Product type e : enzyme
YP_003056870.1	Evidence 4a : Only in Helicobacter pylori
YP_003056871.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16159758, 12732303; Product type pr : regulator
YP_003056872.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11931773, 12426582; Product type r : regulator
YP_003056873.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8885261, 3049606, 10555973, 10485712; Product type e : enzyme
YP_003056874.1	(Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain]; Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_003056875.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003056876.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003056877.1	Evidence 4a : Only in Helicobacter pylori; Product type pm :  membrane component
YP_003056878.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12868652, 11489125, 11371528, 9663688; Product type t : transporter
YP_003056879.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12868652, 11489125, 11371528, 10920394, 9663688; Product type f : factor
YP_003056880.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12868652, 11489125, 11371528, 10920394, 9663688, 8763954; Product type f : factor
YP_003056881.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 17547009, 16769546, 16713544, 15126474, 3089876; Product type e : enzyme
YP_003056882.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14739333, 11856318, 11737200, 11444851, 9257704, 10673432, 8759852; Product type e : enzyme
YP_003056883.1	: GDP-4-dehydro-6-deoxy-D-mannose epimerase; GDP-4-dehydro-6-L-deoxygalactose reductase; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9786182, 9473059, 9862812, 8759852; Product type e : enzyme
YP_003056884.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14726233, 16412426, 15291820, 1482271, 1849603; Product type f : factor
YP_003056885.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14726233, 15491154, 11123699, 8661925; Product type r : regulator
YP_003056886.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11226310, 10954588; Product type pe : enzyme
YP_003056887.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11226310, 10954588, 15297930, 12657791, 12486066, 12426350, 12355374; Product type e : enzyme
YP_003056888.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16368996; Product type t : transporter
YP_003056889.1	(Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase (P5C dehydrogenase)]; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16452403, 15966737, 15449943, 7966312; Product type t : transporter
YP_003056890.1	Evidence 4a : Only in Helicobacter pylori
YP_003056891.1	Evidence 4a : Only in Helicobacter pylori
YP_003056892.1	Evidence 4a : Only in Helicobacter pylori
YP_003056893.1	Evidence 4a : Only in Helicobacter pylori
YP_003056894.1	Evidence 4a : Only in Helicobacter pylori
YP_003056895.1	Evidence 4a : Only in Helicobacter pylori
YP_003056896.1	Evidence 4a : Only in Helicobacter pylori
YP_003056897.1	Evidence 4a : Only in Helicobacter pylori
YP_003056898.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16780553, 1313413, 10500143, 9209019, 7909161; Product type f : factor
YP_003056899.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16780553, 1313413, 10500143, 9209019, 7909161; Product type e : enzyme
YP_003056900.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16780553, 1313413, 10500143, 9209019, 7909161; Product type e : enzyme
YP_003056901.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_003056902.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16780553, 1313413, 10500143, 9209019, 7909161; Product type e : enzyme
YP_003056903.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits
YP_003056904.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits
YP_003056905.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_003056906.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_003056907.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_003056908.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_003056909.1	Evidence 4a : Only in Helicobacter pylori
YP_003056910.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 17517875, 16547053, 12228322, 96405614; Product type r : regulator
YP_003056911.1	forms a direct contact with the tRNA during translation
YP_003056912.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_003056913.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056914.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10809701, 10809701, 16332763, 12480887; Product type e : enzyme
YP_003056915.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056916.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_003056917.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_003056918.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16699188, 16112872, 15952903, 14586097, 12842120, 12575934; Product type e : enzyme
YP_003056919.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12486066, 11226310; Product type e : enzyme
YP_003056920.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16477004, 16720729; Product type e : enzyme
YP_003056921.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056922.1	Involved in the metabolism of aromatic amino acids
YP_003056923.1	Evidence 4a : Only in Helicobacter pylori
YP_003056924.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_003056925.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16529985, 16369945, 10692349; Product type pr :  regulator
YP_003056926.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056927.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003056928.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003056929.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15731083, 16547053; Product type m : membrane component
YP_003056930.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11160814, 2172762, 6251162; Product type e : enzyme
YP_003056931.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_003056932.1	catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine and L-cysteine; or Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine
YP_003056933.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15952768, 14996787, 9034314; Product type e : enzyme
YP_003056934.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_003056935.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_003056936.1	Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction
YP_003056937.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16511238, 15126455, 10821675, 8676381; Product type pe :  enzyme
YP_003056938.1	Evidence 4a : Only in Helicobacter pylori
YP_003056939.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056940.1	FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions
YP_003056941.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_003056942.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003056943.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_003056944.1	Evidence 4a : Only in Helicobacter pylori
YP_003056945.1	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003056946.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_003056947.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12166643; Product type s : structure
YP_003056948.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_003056949.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10225855; Product type m : membrane component
YP_003056950.1	Evidence 4a : Only in Helicobacter pylori
YP_003056951.1	Evidence 4a : Only in Helicobacter pylori
YP_003056952.1	Evidence 4a : Only in Helicobacter pylori
YP_003056953.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2013569, 2504697; Product type e : enzyme
YP_003056954.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16285745, 15629915, 15743941, 12558182, 8026499; Product type t : transporter
YP_003056955.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8760910, 11506923; Product type e : enzyme
YP_003056956.1	Evidence 4b : Only in Helicobacter genus
YP_003056957.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15618175, 10998352, 10644761; Product type e : enzyme
YP_003056958.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003056959.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003056960.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003056961.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8407843, 11785976; Product type t : transporter
YP_003056962.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8407843, 11785976; Product type t : transporter
YP_003056963.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10320570, 16720376, 16201966, 15805527; Product type e : enzyme
YP_003056964.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9696764; Product type t : transporter
YP_003056965.1	CcoN; FixN
YP_003056966.1	CcoO; FixO
YP_003056967.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14714103, 10985736, 9880817, 8757739, 14714103, 10736149, 9880817; Product type e : enzyme
YP_003056968.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14714103, 10985736, 9880817, 8757739, 14714103, 10736149, 9880817; Product type e : enzyme
YP_003056969.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056970.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056971.1	Evidence 4a : Only in Helicobacter pylori
YP_003056972.1	Evidence 4a : Only in Helicobacter pylori; Product type m : membrane component
YP_003056973.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056974.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_003056975.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_003056976.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056977.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056978.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_003056979.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056980.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15814825, 15556710, 9780260, 1624462, 1624461; Product type e : enzyme
YP_003056981.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10438788, 11777911, 10748053; Product type e : enzyme
YP_003056982.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003056983.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_003056984.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16484186, 15109719, 10722597, 10418137; Product type r : regulator
YP_003056985.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16769709, 16672598, 16484186, 1674092, 16618701, 16553882, 16539733; Product type r : regulator
YP_003056986.1	Evidence 4a : Only in Helicobacter pylori
YP_003056987.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056988.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003056989.1	Evidence 4c : Only in epsilon proteobacteria
YP_003056990.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_003056991.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11934270, 12382055, 12420167, 12006571, 9515915, 9851041, 9388540; Product type f : factor
YP_003056992.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_003056993.1	Evidence 4b : Only in Helicobacter genus; Product type pm :  membrane component
YP_003056994.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2186809, 7878731, 7925971, 9546151; Product type e : enzyme
YP_003056995.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_003056996.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_003056997.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10873658, 10712693; Product type e : enzyme
YP_003056998.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16400872, 16092522, 15749056, 1531323, 10518715, 9593292; Product type t : transporter
YP_003056999.1	transfers the fatty acyl group on membrane lipoproteins
YP_003057000.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057001.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_003057002.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_003057003.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057004.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057005.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pm :  membrane component
YP_003057006.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057007.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003057008.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003057009.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit
YP_003057010.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_003057011.1	[NADH]; Catalyzes a key regulatory step in fatty acid biosynthesis
YP_003057012.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_003057013.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_003057014.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_003057015.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057016.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_003057017.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_003057018.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_003057019.1	Evidence 4a : Only in Helicobacter pylori
YP_003057020.1	Evidence 4a : Only in Helicobacter pylori
YP_003057021.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9600981; Product type e : enzyme
YP_003057022.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15814825, 15556710, 9780260, 1624462, 1624461; Product type e : enzyme
YP_003057023.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type pm :  membrane component
YP_003057024.1	molecular chaperone
YP_003057025.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10748053, 11777911, 9317022, 9596777; Product type e : enzyme
YP_003057026.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_003057027.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_003057028.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type t : transporter
YP_003057029.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2995359; Product type e : enzyme
YP_003057030.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_003057031.1	Evidence 4 : Homologs of previously reported genes of unknown function; PubMedId : 11439028
YP_003057032.1	Evidence 4a : Only in Helicobacter pylori
YP_003057033.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11123951, 16185064, 15952888, 15667274, 1219616, 8482384; Product type e : enzyme
YP_003057034.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11123951, 16185064, 15952888, 15667274, 1219616, 8482384; Product type f : factor
YP_003057035.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_003057036.1	[peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (peptide Met(O) reductase); peptide methionine sulfoxide reductase MsrB]; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15387818, 7836279, 7017726, 1386361, 8755589, 9596777; Product type e : enzyme
YP_003057037.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057038.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16173498, 15918181, 12454856; Product type m : membrane component
YP_003057039.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 7616962; Product type pt : transporter
YP_003057040.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 7534278, 7559328, 16322107, 16173498, 15918181, 12454856; Product type m : membrane component
YP_003057041.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_003057042.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057043.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 8733234; Product type pf :  factor
YP_003057044.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7775463; Product type e : enzyme
YP_003057045.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057046.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10438788, 10748053, 11777911, 12853383; Product type pe :  enzyme
YP_003057047.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057048.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_003057049.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_003057050.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_003057051.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16257556, 11108713, 9139929, 8037730; Product type e : enzyme
YP_003057052.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057053.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057054.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10790419, 10564468, 16298743, 16041003, 15788154, 15637768, 12748264; Product type ph : phenotype
YP_003057055.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8346225; Product type r : regulator
YP_003057056.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057057.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_003057058.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1552844, 16352840, 16337753; Product type e : enzyme
YP_003057059.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057060.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057061.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003057062.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 10454640; Product type m : membrane component
YP_003057063.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 10454640; Product type m : membrane component
YP_003057064.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_003057065.1	Evidence 4a : Only in Helicobacter pylori
YP_003057066.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057067.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057068.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_003057069.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11133936, 10954588; Product type e : enzyme
YP_003057070.1	Evidence 5 : No homology to any previously reported sequences
YP_003057071.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11226310, 10944229, 10954588; Product type e : enzyme
YP_003057072.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1906060, 8885261, 2185473, 9651675, 16289019; Product type f : factor
YP_003057073.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16109941, 15159384; Product type m : membrane component
YP_003057074.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16522191, 15278241, 858905, 16255137, 10938275, 7928775; Product type e : enzyme
YP_003057075.1	Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline
YP_003057076.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057077.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_003057078.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057079.1	Evidence 4a : Only in Helicobacter pylori
YP_003057080.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057081.1	Evidence 4a : Only in Helicobacter pylori
YP_003057082.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057083.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057084.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057085.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15866207, 12700272, 10898687; Product type pc :  carrier
YP_003057086.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2005135, 9882669, 15248747, 8394006; Product type e : enzyme
YP_003057087.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8478319, 9446588, 16109967, 12591937, 11717579, 11054112; Product type e : enzyme
YP_003057088.1	acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes
YP_003057089.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_003057090.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057091.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_003057092.1	Evidence 4c : Only in epsilon proteobacteria; Product type pm :  membrane component
YP_003057093.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11882645, 15339930; Product type pe : enzyme
YP_003057094.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 18421140, 8892813, 9244252, 8550601, 9560419; Product type e : enzyme
YP_003057095.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057096.1	Evidence 4c : Only in epsilon proteobacteria; Product type pm :  membrane component
YP_003057097.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16610017, 16579839, 16579837, 16552038, 16497614, 16489309; Product type pm :  membrane component
YP_003057098.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16511157, 14633099, 12355264; Product type e : enzyme
YP_003057099.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 3, 2, 7496998, 8000535, 15753077, 15534933; Product type pe :  enzyme
YP_003057100.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057101.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11450855, 11371633, 8679677, 14745019, 8472953, 2656685, 3057324; Product type e : enzyme
YP_003057102.1	aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates
YP_003057103.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook
YP_003057104.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type s : structure
YP_003057105.1	involved in the peptidyltransferase reaction during translation
YP_003057106.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16181352, 8527431, 1956284, 15845494, 14568145; Product type t : transporter
YP_003057107.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16181352, 14568145, 11858173, 7536291; Product type t : transporter
YP_003057108.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16181352, 11858173, 9680220; Product type t : transporter
YP_003057109.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16181352, 11858173, 9680220; Product type t : transporter
YP_003057110.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16181352, 11858173, 9680220, 7536291; Product type t : transporter
YP_003057111.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_003057112.1	Evidence 4a : Only in Helicobacter pylori
YP_003057113.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057114.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_003057115.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057116.1	Evidence 4b : Only in Helicobacter genus; Product type pm :  membrane component
YP_003057117.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 7987228, 11380987, 12054553; Product type pe :  enzyme
YP_003057118.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9163424, 8170399, 9163415; Product type pe :  enzyme
YP_003057119.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057120.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 1655697, 1624427, 8423137, 9209019, 9140970; Product type pf :  factor
YP_003057121.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 17347820; Product type pt : transporter
YP_003057122.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057123.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_003057124.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16291683, 16027357, 12867413, 11591389, 11422364, 11350936; Product type t : transporter
YP_003057125.1	Essential for recycling GMP and indirectly, cGMP
YP_003057126.1	Evidence 4a : Only in Helicobacter pylori
YP_003057127.1	membrane-associated cation-independent thermostable nuclease; preferentially cleaves ss-DNA; involved in DNA transformation
YP_003057128.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856; Product type m : membrane component
YP_003057129.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_003057130.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 2921244, 9748431, 15687208, 15361076, 10559162; Product type ps :  structure
YP_003057131.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_003057132.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_003057133.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_003057134.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16585760, 16584194, 2645057, 10220403, 1836760, 11566131, 16376524; Product type e : enzyme
YP_003057135.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_003057136.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10482496, 10640603, 16194595, 14617176, 12123453, 11823215; Product type f : factor
YP_003057137.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_003057138.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9596777, 11777911, 12853383, 15223324; Product type e : enzyme
YP_003057139.1	Evidence 4a : Only in Helicobacter pylori
YP_003057140.1	Evidence 4a : Only in Helicobacter pylori
YP_003057141.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pm :  membrane component
YP_003057142.1	Evidence 4c : Only in epsilon proteobacteria; Product type pm :  membrane component
YP_003057143.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9660827, 16511038, 15928344; Product type e : enzyme
YP_003057144.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2649886, 16488881, 15687199, 10498723; Product type e : enzyme
YP_003057145.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_003057146.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pm :  membrane component
YP_003057147.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_003057148.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_003057149.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_003057150.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_003057151.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_003057152.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057153.1	Evidence 4a : Only in Helicobacter pylori
YP_003057154.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9931471, 15136044, 1503936; Product type s : structure
YP_003057155.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1556144, 10613883, 2053984; Product type t : transporter
YP_003057156.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16612541, 16553881, 16452433, 16301526, 16194242, 15491352, 9748467; Product type ph : phenotype
YP_003057157.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057158.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_003057159.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_003057160.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11179345, 12018657; Product type e : enzyme
YP_003057161.1	Evidence 4a : Only in Helicobacter pylori
YP_003057162.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_003057163.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10633126, 16322107, 16173498, 15918181, 12454856; Product type m : membrane component
YP_003057164.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9575204, 11546864; Product type t : transporter
YP_003057165.1	Evidence 4a : Only in Helicobacter pylori
YP_003057166.1	Evidence 4a : Only in Helicobacter pylori
YP_003057167.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11796600, 10692379, 11844775, 12890020, 16239520, 16452405, 9417070; Product type t : transporter
YP_003057168.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057169.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057170.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 9440521, 11031122; Product type f : factor
YP_003057171.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12060779, 9789554, 9244252, 8550601, 7752900, 9440521; Product type t : transporter
YP_003057172.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15031650, 16294310; Product type e : enzyme
YP_003057173.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 18421140, 9560419, 8892813, 9244252, 8550601, 9440521; Product type e : enzyme
YP_003057174.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_003057175.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16207913, 15664919, 11535789, 10722597, 10049806, 9485379; Product type r : regulator
YP_003057176.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614; Product type m : membrane component
YP_003057177.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057178.1	Evidence 4a : Only in Helicobacter pylori
YP_003057179.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_003057180.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_003057181.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16487318, 16343541, 11591389, 11279240, 10593889, 16092529; Product type t : transporter
YP_003057182.1	mediates the export of protein precursors bearing twin-arginine signal peptides
YP_003057183.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_003057184.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_003057185.1	Evidence 4a : Only in Helicobacter pylori
YP_003057186.1	Evidence 4a : Only in Helicobacter pylori
YP_003057187.1	Evidence 4a : Only in Helicobacter pylori
YP_003057188.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057189.1	blocks the formation of polar Z-ring septums
YP_003057190.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_003057191.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057192.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_003057193.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057194.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_003057195.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_003057196.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057197.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_003057198.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8683579; Product type pe :  enzyme
YP_003057199.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr :  regulator
YP_003057200.1	Evidence 6 : Doubtful CDS
YP_003057201.1	Evidence 5 : No homology to any previously reported sequences
YP_003057202.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9478130; Product type pe :  enzyme
YP_003057203.1	membrane protein involved in the flagellar export apparatus
YP_003057204.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_003057205.1	Evidence 4b : Only in Helicobacter genus; Product type m : membrane component
YP_003057206.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_003057207.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15313226, 9797327, 9421914, 6336737; Product type e : enzyme
YP_003057208.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9118956, 1325970; Product type e : enzyme
YP_003057209.1	positive regulator of class III flagellar genes
YP_003057210.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15361076; Product type pf :  factor
YP_003057211.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057212.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_003057213.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_003057214.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_003057215.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057216.1	Evidence 4b : Only in Helicobacter genus
YP_003057217.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16369017, 15699202, 15221763, 12890020, 12748264, 12421315, 11796589; Product type r : regulator
YP_003057218.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15037234, 15037233; Product type pe : enzyme
YP_003057219.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 1988958, 2305262; Product type pr : regulator
YP_003057220.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10894735, 16585746, 16533811, 16487673, 15763707, 14984054, 12369934; Product type f : factor
YP_003057221.1	Evidence 4b : Only in Helicobacter genus
YP_003057222.1	Evidence 4a : Only in Helicobacter pylori
YP_003057223.1	Evidence 4a : Only in Helicobacter pylori
YP_003057224.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10966457; Product type pr : regulator
YP_003057225.1	[Includes: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS) (MECDP-synthase)]; bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations
YP_003057226.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15547264, 12065478, 16585775, 16369036, 16177372, 16085809; Product type pe :  enzyme
YP_003057227.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003057228.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16514141, 10629182, 8576035; Product type e : enzyme
YP_003057229.1	Evidence 4a : Only in Helicobacter pylori
YP_003057230.1	Acts on the hydroxyl group at position 7 of the steroid frame
YP_003057231.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_003057232.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057233.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_003057234.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_003057235.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9837717, 8336674, 3323532; Product type e : enzyme
YP_003057236.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16614449, 16368872, 16207918, 15699185, 15475385, 3323532; Product type e : enzyme
YP_003057237.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057238.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057239.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057240.1	Evidence 4a : Only in Helicobacter pylori
YP_003057241.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057242.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16391147, 11741842, 7674922, 7798200; Product type e : enzyme
YP_003057243.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14604015, 10742217, 10092637, 9537504; Product type t : transporter
YP_003057244.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 6322107, 16173498, 15918181, 12454856; Product type m : membrane component
YP_003057245.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16385130, 11421278, 10446207; Product type t : transporter
YP_003057246.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16452441, 16385130, 15489438, 11421278; Product type t : transporter
YP_003057247.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14756792, 11421278, 7665460, 9325422; Product type t : transporter
YP_003057248.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_003057249.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16220040, 16173498, 15918181, 12454856, 11211867, 9252185; Product type m : membrane component
YP_003057250.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11133936, 11226310; Product type e : enzyme
YP_003057251.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11226310, 11133936; Product type pe : enzyme
YP_003057252.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15297874, 15000390, 11683274, 9622352, 7737996; Product type f : factor
YP_003057253.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11226310, 11133936; Product type e : enzyme
YP_003057254.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11226310; Product type pe :  enzyme
YP_003057255.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16885452, 16879643, 16416177, 16298744, 16008611, 8955320, 2045782; Product type pe : enzyme
YP_003057256.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type m : membrane component
YP_003057257.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type m : membrane component
YP_003057258.1	Evidence 4a : Only in Helicobacter pylori
YP_003057259.1	Evidence 6 : Doubtful CDS
YP_003057260.1	Evidence 4a : Only in Helicobacter pylori
YP_003057261.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_003057262.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12704139, 12165031, 11886560, 11466300, 16914236, 11953376, 10217784; Product type m : membrane component
YP_003057263.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16885452, 16879643, 16416177, 16298744, 16008611, 8955320, 2045782; Product type e : enzyme
YP_003057264.1	Evidence 4a : Only in Helicobacter pylori
YP_003057265.1	Evidence 4a : Only in Helicobacter pylori
YP_003057266.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9300819, 2155230; Product type pt : transporter
YP_003057267.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12000771, 11557141, 11016943, 2995360; Product type e : enzyme
YP_003057268.1	the hook connects flagellar basal body to the flagellar filament
YP_003057269.1	plays a role in hydrogenase nickel cofactor insertion
YP_003057270.1	Evidence 4a : Only in Helicobacter pylori
YP_003057271.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_003057272.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_003057273.1	catalyzes the formation of dUMP from dUTP
YP_003057274.1	Evidence 4a : Only in Helicobacter pylori
YP_003057275.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14769936, 16513394; Product type f : factor
YP_003057276.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_003057277.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057278.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12101286, 11751812; Product type e : enzyme
YP_003057279.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15823050, 11751812, 11496013, 11349030, 9353016, 9119477; Product type e : enzyme
YP_003057280.1	[Includes: D-beta-D-heptose 7-phosphate kinase (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase ]; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12803486, 12441667, 11496013, 10629197, 8755886; Product type e : enzyme
YP_003057281.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_003057282.1	Evidence 4a : Only in Helicobacter pylori
YP_003057283.1	Evidence 4a : Only in Helicobacter pylori
YP_003057284.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1979163, 1039060, 12923093, 2904262; Product type e : enzyme
YP_003057285.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1051871, 9593292; Product type t : transporter
YP_003057286.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057287.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12105196, 15699185, 2784505; Product type e : enzyme
YP_003057288.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_003057289.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15292217, 12794638, 11839308, 10382260, 10075431, 9244280; Product type e : enzyme
YP_003057290.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_003057291.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057292.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_003057293.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16286454, 16077121, 15956417, 15322055, 15060026, 14562386, 10954725; Product type e : enzyme
YP_003057294.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185, 8899706; Product type m : membrane component
YP_003057295.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057296.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057297.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15255779; Product type r : regulator
YP_003057298.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_003057299.1	Evidence 4a : Only in Helicobacter pylori
YP_003057300.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_003057301.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_003057302.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_003057303.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_003057304.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_003057305.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2470643; Product type r : regulator
YP_003057306.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057307.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16354674, 16213196, 15965489, 11222594, 10671551; Product type e : enzyme
YP_003057308.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16354674, 16213196, 15965489, 11222594, 10671551; Product type c : carrier
YP_003057309.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057310.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_003057311.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_003057312.1	Evidence 4b : Only in Helicobacter genus
YP_003057313.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2691838, 2515417, 7592481; Product type e : enzyme
YP_003057314.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10216873; Product type t : transporter
YP_003057315.1	Evidence 4a : Only in Helicobacter pylori
YP_003057316.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_003057317.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_003057318.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16388576, 15896804, 12234097, 11290749, 11463785, 11438688, 11713534; Product type e : enzyme
YP_003057319.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057320.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057321.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057322.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057323.1	interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_003057324.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_003057325.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057326.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8817494; Product type pe :  enzyme
YP_003057327.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate
YP_003057328.1	Evidence 4a : Only in Helicobacter pylori; Product type pm :  membrane component
YP_003057329.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_003057330.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15709772, 12372836, 8514782; Product type e : enzyme
YP_003057331.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12372836, 8514782; Product type e : enzyme
YP_003057332.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_003057333.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_003057334.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16428735, 16041003, 15849827, 12819067, 11710844, 9287032, 7592366; Product type lp : lipoprotein
YP_003057335.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16181353, 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type m : membrane component
YP_003057336.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_003057337.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_003057338.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_003057339.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme
YP_003057340.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10417643, 10577484, 9789554, 8550601, 16835223, 16491024, 16388822; Product type t : transporter
YP_003057341.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003057342.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003057343.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057344.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057345.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type m : membrane component
YP_003057346.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16585747, 12823819, 12198129, 10783239, 10783239; Product type t : transporter
YP_003057347.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_003057348.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_003057349.1	Evidence 4a : Only in Helicobacter pylori
YP_003057350.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185, 7534278; Product type m : membrane component
YP_003057351.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057352.1	Evidence 4a : Only in Helicobacter pylori
YP_003057353.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_003057354.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057355.1	Catalyzes the phosphorylation of UMP to UDP
YP_003057356.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_003057357.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16672627, 2005135, 9882669, 16467149, 16343907, 15853883; Product type e : enzyme
YP_003057358.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_003057359.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057360.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 17085576; Product type e : enzyme
YP_003057361.1	Evidence 4a : Only in Helicobacter pylori
YP_003057362.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_003057363.1	MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis
YP_003057364.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_003057365.1	Evidence 4a : Only in Helicobacter pylori
YP_003057366.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16820862; Product type pf :  factor
YP_003057367.1	Evidence 4a : Only in Helicobacter pylori
YP_003057368.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057369.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_003057370.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16189122, 15716425, 14695443, 14679249; Product type t : transporter
YP_003057371.1	Evidence 4c : Only in epsilon proteobacteria; Product type m : membrane component
YP_003057372.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11380987, 7987228; Product type pe : enzyme
YP_003057373.1	Evidence 4a : Only in Helicobacter pylori
YP_003057374.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12234097, 11713534; Product type pf : factor
YP_003057375.1	Evidence 4b : Only in Helicobacter genus
YP_003057376.1	flagellin specific chaperone
YP_003057377.1	involved in flagellin assembly
YP_003057378.1	possibly involved in flagella export
YP_003057379.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057380.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16416128, 14729705, 11430412; Product type t : transporter
YP_003057381.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16416128, 14729705, 11430412, 9593292, 10518715, 3025556; Product type t : transporter
YP_003057382.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_003057383.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057384.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15928344, 15078091, 14730022, 14659742, 14501142, 9814761, 9843401; Product type e : enzyme
YP_003057385.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15612918, 12596863, 11976312, 9922463, 962235, 7575501, 250943; Product type cp : cell process
YP_003057386.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_003057387.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12119013, 9164465, 1472710; Product type pe :  enzyme
YP_003057388.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15694856, 15694856, 8973200, 2668880; Product type e : enzyme
YP_003057389.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057390.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_003057391.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1309518, 2846511, 2846510; Product type e : enzyme
YP_003057392.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8482384; Product type pe :  enzyme
YP_003057393.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 692401, 9743633, 3886014; Product type pe :  enzyme
YP_003057394.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057395.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10768971; Product type pf :  factor
YP_003057396.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057397.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057398.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16039592, 15124629; Product type e : enzyme
YP_003057399.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr :  regulator
YP_003057400.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type pm :  membrane component
YP_003057401.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type m : membrane component
YP_003057402.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB
YP_003057403.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2407723, 8898907; Product type e : enzyme
YP_003057404.1	Evidence 5 : No homology to any previously reported sequences
YP_003057405.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057406.1	Evidence 4a : Only in Helicobacter pylori
YP_003057407.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type t : transporter
YP_003057408.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_003057409.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057410.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003057411.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_003057412.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057413.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185, 7534278; Product type m : membrane component
YP_003057414.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057415.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057416.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12153713, 10876091, 10572301, 9721276; Product type e : enzyme
YP_003057417.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 7559328, 16102915, 15939494, 14742532, 12454143, 16322107, 16173498; Product type m : membrane component
YP_003057418.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_003057419.1	Evidence 5 : No homology to any previously reported sequences
YP_003057420.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type r : regulator
YP_003057421.1	Evidence 4a : Only in Helicobacter pylori
YP_003057422.1	negatively supercoils closed circular double-stranded DNA
YP_003057423.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8071224, 12923107, 3015952, 3015952; Product type e : enzyme
YP_003057424.1	Evidence 4a : Only in Helicobacter pylori
YP_003057425.1	Evidence 5 : No homology to any previously reported sequences
YP_003057426.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057427.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10222578, 1732229; Product type pe : enzyme
YP_003057428.1	Evidence 4b : Only in Helicobacter genus
YP_003057429.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11267787, 2883171, 3025185; Product type t : transporter
YP_003057430.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 9325289, 10091606, 10477312, 10477311, 10809701, 1624453, 9083111; Product type c : carrier
YP_003057431.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9325289, 10091606, 10477312, 10477311, 10809701, 1624453, 9083111; Product type c : carrier
YP_003057432.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme
YP_003057433.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057434.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16041003, 15270747, 16718600, 10931324, 8407793, 16430693, 12781516; Product type t : transporter
YP_003057435.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2836368, 10633096, 10713425, 12165031, 16718597, 16333751, 16193283; Product type pt :  transporter
YP_003057436.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_003057437.1	[UDP-N-acetylglucosamine pyrophosphorylase N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase]; forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_003057438.1	Evidence 4a : Only in Helicobacter pylori
YP_003057439.1	Evidence 4a : Only in Helicobacter pylori
YP_003057440.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_003057441.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057442.1	Evidence 4c : Only in epsilon proteobacteria; Product type m : membrane component
YP_003057443.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12517410; Product type e : enzyme
YP_003057444.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme
YP_003057445.1	Evidence 5 : No homology to any previously reported sequences
YP_003057446.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_003057447.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type m : membrane component
YP_003057448.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003057449.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003057450.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057451.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057452.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057453.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_003057454.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057455.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_003057456.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_003057457.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_003057458.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057459.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057460.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_003057461.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057462.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057463.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003057464.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057465.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12065536, 9782498; Product type c : carrier
YP_003057466.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16269752, 2997734; Product type e : enzyme
YP_003057467.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16477004, 15058985, 10496917; Product type e : enzyme
YP_003057468.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057469.1	catalyzes the formation of fumarate from aspartate
YP_003057470.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_003057471.1	Evidence 4b : Only in Helicobacter genus
YP_003057472.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16132460, 15240254, 15213167; Product type e : enzyme
YP_003057473.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme
YP_003057474.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057475.1	charges one glutamine molecule and pairs it with tRNA(Gln)
YP_003057476.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16426819, 15856372, 15496391, 1549639, 12648728; Product type e : enzyme
YP_003057477.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12729017; Product type pe :  enzyme
YP_003057478.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10684583; Product type pe :  enzyme
YP_003057479.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057480.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 15457576, 15131212, 10852959; Product type m : membrane component
YP_003057481.1	Evidence 4a : Only in Helicobacter pylori
YP_003057482.1	Evidence 4a : Only in Helicobacter pylori
YP_003057483.1	Evidence 4b : Only in Helicobacter genus
YP_003057484.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14726233; Product type e : enzyme
YP_003057485.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14726233, 8764511; Product type e : enzyme
YP_003057486.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14726233, 11123699, 8764511; Product type e : enzyme
YP_003057487.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11123699, 8764511; Product type e : enzyme
YP_003057488.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14977943, 16511004, 8611590; Product type e : enzyme
YP_003057489.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057490.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10508663, 10850974, 9012664; Product type e : enzyme
YP_003057491.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_003057492.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12670965; Product type e : enzyme
YP_003057493.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_003057494.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057495.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_003057496.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_003057497.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_003057498.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_003057499.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11535789, 8169224, 8169223; Product type pf :  factor
YP_003057500.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_003057501.1	Evidence 4a : Only in Helicobacter pylori
YP_003057502.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16610017, 16579839, 16579837, 16552038, 16497614, 16489309; Product type pm :  membrane component
YP_003057503.1	Evidence 4a : Only in Helicobacter pylori
YP_003057504.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10639345, 7651136, 8987357, 8830678; Product type m : membrane component
YP_003057505.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10639345, 7651136, 8987357, 8830678; Product type m : membrane component
YP_003057506.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10639345, 7651136, 8987357, 8830678; Product type m : membrane component
YP_003057507.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_003057508.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057509.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10777493, 16468998; Product type e : enzyme
YP_003057510.1	FlaA; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions
YP_003057511.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12504680; Product type t : transporter
YP_003057512.1	Evidence 2b : Function of strongly homologous gene; PubMedId : 10456921, 8809743; Product type m : membrane component
YP_003057513.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11255013, 8763940, 3058702; Product type e : enzyme
YP_003057514.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16684266, 12461003, 12069978, 11181392, 11083642, 10797079; Product type e : enzyme
YP_003057515.1	Tip-alpha; forms a dimer; found in culture supernatant; induces TNF-alpha and NF-kappa-B in cell cultures of mouse cells
YP_003057516.1	Evidence 4a : Only in Helicobacter pylori
YP_003057517.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057518.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057519.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme
YP_003057520.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057521.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 9495749, 10809701, 8759844, 7608066; Product type e : enzyme
YP_003057522.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 9495749, 10809701, 8759844, 7608066; Product type e : enzyme
YP_003057523.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 9495749, 10809701, 8759844, 7608066; Product type e : enzyme
YP_003057524.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 9495749, 10809701, 8759844, 7608066; Product type c : carrier
YP_003057525.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14745019, 11011151; Product type e : enzyme
YP_003057526.1	Evidence 4a : Only in Helicobacter pylori
YP_003057527.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057528.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12601164; Product type e : enzyme
YP_003057529.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_003057530.1	Evidence 4a : Only in Helicobacter pylori
YP_003057531.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt :  transporter
YP_003057532.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_003057533.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057534.1	Evidence 4a : Only in Helicobacter pylori
YP_003057535.1	Evidence 4b : Only in Helicobacter genus
YP_003057536.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_003057537.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16126156, 15546672, 12423785, 9194173; Product type e : enzyme
YP_003057538.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057539.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_003057540.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057541.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_003057542.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057543.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_003057544.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_003057545.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057546.1	Evidence 4c : Only in epsilon proteobacteria; Product type m : membrane component
YP_003057547.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_003057548.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type m : membrane component
YP_003057549.1	Evidence 4a : Only in Helicobacter pylori
YP_003057550.1	Evidence 4a : Only in Helicobacter pylori
YP_003057551.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_003057552.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_003057553.1	carries the fatty acid chain in fatty acid biosynthesis
YP_003057554.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_003057555.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_003057556.1	Evidence 4a : Only in Helicobacter pylori
YP_003057557.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057558.1	Evidence 4a : Only in Helicobacter pylori
YP_003057559.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2401410; Product type e : enzyme
YP_003057560.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057561.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_003057562.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_003057563.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_003057564.1	Evidence 4a : Only in Helicobacter pylori
YP_003057565.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057566.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_003057567.1	heat shock protein involved in degradation of misfolded proteins
YP_003057568.1	heat shock protein involved in degradation of misfolded proteins
YP_003057569.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_003057570.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003057571.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003057572.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057573.1	Evidence 4a : Only in Helicobacter pylori
YP_003057574.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11390701, 9573059, 1612427, 2574599; Product type e : enzyme
YP_003057575.1	Evidence 5 : No homology to any previously reported sequences
YP_003057576.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10198012, 18227160; Product type lp : lipoprotein
YP_003057577.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_003057578.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11283302, 8606183; Product type e : enzyme
YP_003057579.1	Evidence 4a : Only in Helicobacter pylori
YP_003057580.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057581.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057582.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057583.1	negatively supercoils closed circular double-stranded DNA
YP_003057584.1	binds the polymerase to DNA and acts as a sliding clamp
YP_003057585.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9779464, 8031825; Product type pt : transporter
YP_003057586.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9779464, 8031825; Product type pt : transporter
YP_003057587.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057588.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057589.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_003057590.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_003057591.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16953581, 16428735, 15609408, 11855744, 9287032, 8487294, 7678592; Product type lp : lipoprotein
YP_003057592.1	required for 70S ribosome assembly
YP_003057593.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt :  transporter
YP_003057594.1	Evidence 4a : Only in Helicobacter pylori
YP_003057595.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_003057596.1	Evidence 4a : Only in Helicobacter pylori
YP_003057597.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11930024, 11274131, 2680969; Product type pf :  factor
YP_003057598.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_003057599.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 18410539, 18201978, 18199531, 18039108, 17368441, 11560962, 11560948; Product type m : membrane component
YP_003057600.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10802180, 1526456, 2254251; Product type t : transporter
YP_003057601.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16484186, 14726233, 12896998, 12533448, 11123699, 1482271; Product type t : transporter
YP_003057602.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9139899; Product type pe :  enzyme
YP_003057603.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9139899; Product type pe :  enzyme
YP_003057604.1	Evidence 4a : Only in Helicobacter pylori
YP_003057605.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057606.1	Evidence 4a : Only in Helicobacter pylori
YP_003057607.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16790815, 16322107, 15557006, 14762173, 11866522, 11160014, 9430586; Product type pm :  membrane component
YP_003057609.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14726233, 16814778, 15504408, 11123699, 1482271; Product type f : factor
YP_003057610.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14726233, 15504408, 15491154, 10783387, 1482271; Product type f : factor
YP_003057611.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 14726233, 14521881, 1289699, 16807243, 16142921, 12533448, 11123699; Product type e : enzyme
YP_003057612.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057613.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057614.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16678422, 16552088, 15062079, 15048838; Product type e : enzyme
YP_003057615.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8631687; Product type pf :  factor
YP_003057616.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod
YP_003057617.1	the hook connects flagellar basal body to the flagellar filament
YP_003057618.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11226310; Product type pe :  enzyme
YP_003057619.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11226310; Product type e : enzyme
YP_003057620.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16815905, 16442499, 15199167, 14757053, 10388562; Product type e : enzyme
YP_003057621.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16173498, 15918181, 12454856, 12399485, 11925614, 7534278; Product type m : membrane component
YP_003057622.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 12399485, 7534278, 16322107, 16173498, 15918181, 12454856, 11925614; Product type m : membrane component
YP_003057623.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type m : membrane component
YP_003057624.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12704139, 12165031, 11886560, 16914236, 16797200, 11953376; Product type pt :  transporter
YP_003057625.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057626.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_003057627.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pe :  enzyme
YP_003057628.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16523451; Product type e : enzyme
YP_003057629.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16610017, 16579839, 16579837, 16552038, 16497614, 16489309; Product type pf :  factor
YP_003057630.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16220040, 16173498, 15918181, 12454856, 11211867, 9252185; Product type m : membrane component
YP_003057631.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16405343, 1732207, 7966298; Product type e : enzyme
YP_003057632.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_003057633.1	catalyzes the modification of U13 in tRNA(Glu)
YP_003057634.1	metalloprotease
YP_003057635.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_003057636.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15809342, 15236249, 8830250, 2089044, 2676985; Product type e : enzyme
YP_003057637.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_003057638.1	Evidence 4a : Only in Helicobacter pylori
YP_003057639.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057640.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057641.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057642.1	Evidence 4a : Only in Helicobacter pylori
YP_003057643.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003057644.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003057645.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15683232, 9063881, 16310730; Product type e : enzyme
YP_003057646.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 1447975, 1400476, 8031825; Product type pt :  transporter
YP_003057647.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9457858, 7906689; Product type pe : enzyme
YP_003057648.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10368157, 10557275; Product type pr : regulator
YP_003057649.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15228539, 16021482, 9190799; Product type pt :  transporter
YP_003057650.1	Evidence 4a : Only in Helicobacter pylori
YP_003057651.1	Evidence 5 : No homology to any previously reported sequences
YP_003057652.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057653.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_003057654.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_003057655.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057656.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 7538190; Product type pf :  factor
YP_003057657.1	Evidence 4a : Only in Helicobacter pylori
YP_003057658.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16426819, 15904482, 15856372, 15496391, 15361078, 12738391, 12648728; Product type e : enzyme
YP_003057659.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_003057660.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15078091, 9660827, 9843401; Product type e : enzyme
YP_003057661.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_003057662.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057663.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057664.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_003057665.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_003057666.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15113832, 14536035; Product type c : carrier
YP_003057667.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057668.1	Evidence 4b : Only in Helicobacter genus
YP_003057669.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12426358, 11023484, 10473554, 9371429, 8991852, 8829543; Product type pt :  transporter
YP_003057670.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12426358, 9371429, 8991852; Product type pt :  transporter
YP_003057671.1	Evidence 4b : Only in Helicobacter genus
YP_003057672.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_003057673.1	Evidence 4a : Only in Helicobacter pylori
YP_003057674.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_003057675.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_003057676.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_003057677.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16267292, 9670013; Product type pe : enzyme
YP_003057678.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12626683, 16159787, 11847116, 11053380, 1400163; Product type cp : cell process
YP_003057679.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_003057680.1	Evidence 5 : No homology to any previously reported sequences
YP_003057681.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 7674922; Product type pe :  enzyme
YP_003057682.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10856643, 3021756; Product type pe : enzyme
YP_003057683.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15063854, 14671322, 12626684, 12080120, 10202137, 2546007; Product type pt : transporter
YP_003057684.1	Evidence 5 : No homology to any previously reported sequences
YP_003057685.1	Evidence 4a : Only in Helicobacter pylori
YP_003057686.1	Evidence 4a : Only in Helicobacter pylori
YP_003057687.1	Evidence 5 : No homology to any previously reported sequences
YP_003057688.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057689.1	Evidence 4a : Only in Helicobacter pylori
YP_003057690.1	Evidence 4a : Only in Helicobacter pylori
YP_003057691.1	Evidence 5 : No homology to any previously reported sequences
YP_003057692.1	Evidence 4a : Only in Helicobacter pylori
YP_003057693.1	Evidence 4a : Only in Helicobacter pylori
YP_003057694.1	Evidence 4a : Only in Helicobacter pylori
YP_003057695.1	Evidence 4a : Only in Helicobacter pylori
YP_003057696.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_003057697.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 7961465; Product type pe :  enzyme
YP_003057698.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057699.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057700.1	Evidence 4b : Only in Helicobacter genus
YP_003057701.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_003057702.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 20353464, 9882672, 8022273, 93075691; Product type e : enzyme
YP_003057703.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057704.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 97431527, 93139035, 96042077, 93253769; Product type ps :  structure
YP_003057705.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_003057706.1	Evidence 4a : Only in Helicobacter pylori
YP_003057707.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15601707, 8919859, 2180922, 9242907, 8890912; Product type e : enzyme
YP_003057708.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057709.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057710.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15703176, 1472710; Product type pe : enzyme
YP_003057711.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_003057712.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_003057713.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_003057714.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_003057715.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_003057716.1	Evidence 4a : Only in Helicobacter pylori
YP_003057717.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_003057718.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15979273, 12799002, 11029449, 782527; Product type e : enzyme
YP_003057719.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057720.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057721.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16207913, 11535789, 16369945, 8809743, 8169224, 8169223; Product type r : regulator
YP_003057722.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16879644, 16207913, 15664919, 10722597, 9724541; Product type e : enzyme
YP_003057723.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16207913, 11535789, 16369945, 1326408, 8809743, 8456299; Product type r : regulator
YP_003057724.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11744405, 15158282, 11673441, 9457886, 7523254; Product type e : enzyme
YP_003057725.1	[Fe]; Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15901691, 16416177, 10675591, 7515365, 8225605; Product type e : enzyme
YP_003057726.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057727.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_003057728.1	Evidence 4a : Only in Helicobacter pylori
YP_003057729.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057730.1	Evidence 4a : Only in Helicobacter pylori
YP_003057731.1	Evidence 4a : Only in Helicobacter pylori
YP_003057732.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057733.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15629922, 15223314, 11805295, 10690633, 10220893, 7883187; Product type e : enzyme
YP_003057734.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_003057735.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16477004, 15058985, 10496917; Product type e : enzyme
YP_003057736.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16629661, 8617725; Product type f : factor
YP_003057737.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057738.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_003057739.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057740.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_003057741.1	Evidence 4a : Only in Helicobacter pylori
YP_003057742.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_003057743.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11390406, 11157970, 10542197; Product type e : enzyme
YP_003057744.1	biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_003057745.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 17921292, 17346936, 11226310; Product type pe :  enzyme
YP_003057746.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 17346936, 16217547, 14711809, 12490707, 12426350, 12034832, 11956101; Product type pe : enzyme
YP_003057747.1	Evidence 4a : Only in Helicobacter pylori
YP_003057748.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16421095; Product type e : enzyme
YP_003057749.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_003057750.1	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins
YP_003057751.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057752.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_003057753.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14597172, 11425718, 11119535, 9708982; Product type e : enzyme
YP_003057754.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057755.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057756.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16460007, 16040986, 15223324, 11777911, 99369890, 10748053; Product type cp : cell process
YP_003057757.1	[4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxy-phosphogluconate aldolase (phospho-2-dehydro-3-deoxygluconate aldolase) (phospho-2-keto-3-deoxygluconate aldolase) (2-keto-3-deoxy-6-phosphogluconate aldolase) (KDPG-aldolase)]; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15659677, 12889025; Product type e : enzyme
YP_003057758.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_003057759.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_003057760.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15766779; Product type pe :  enzyme
YP_003057761.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_003057762.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057763.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 1624461; Product type pe :  enzyme
YP_003057764.1	Evidence 4a : Only in Helicobacter pylori
YP_003057765.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003057766.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 7608066, 9495749; Product type e : enzyme
YP_003057767.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 7608066, 9495749; Product type e : enzyme
YP_003057768.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 7608066, 9495749; Product type e : enzyme
YP_003057769.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 7608066, 9495749; Product type e : enzyme
YP_003057770.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_003057771.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003057772.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_003057773.1	Evidence 4a : Only in Helicobacter pylori
YP_003057774.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10748053, 11777911, 9317022, 9596777; Product type pe :  enzyme
YP_003057775.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15378780, 11349094, 10200957; Product type e : enzyme
YP_003057776.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_003057777.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057778.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14711809, 12034832, 11703661, 11226310, 11133936; Product type e : enzyme
YP_003057779.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11985711, 11489132; Product type f : factor
YP_003057780.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057781.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15569666, 12100551; Product type pe :  enzyme
YP_003057782.1	Evidence 4a : Only in Helicobacter pylori
YP_003057783.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10515919, 8763621; Product type lp : lipoprotein
YP_003057784.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_003057785.1	Evidence 4a : Only in Helicobacter pylori
YP_003057786.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16741124, 12890020, 9811664, 9643536, 9159515, 7642501, 2670903; Product type t : transporter
YP_003057787.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16741124, 12890020, 9811664, 9643536, 9159515, 7642501, 2670903; Product type t : transporter
YP_003057788.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_003057789.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_003057790.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_003057791.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_003057792.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_003057793.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_003057794.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.
YP_003057795.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10619014, 9506522; Product type pr : regulator
YP_003057796.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15522501, 11042157, 9701812; Product type pr :  regulator
YP_003057797.1	[Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase(Biotin--protein ligase)]; catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_003057798.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_003057799.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057800.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057801.1	Evidence 4a : Only in Helicobacter pylori
YP_003057802.1	Evidence 4a : Only in Helicobacter pylori
YP_003057803.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_003057804.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_003057805.1	Essential for efficient processing of 16S rRNA
YP_003057806.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf :  factor
YP_003057807.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_003057808.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11735405, 16343944, 16299512, 16005894; Product type f : factor
YP_003057809.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_003057810.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_003057811.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_003057812.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16173498, 15918181, 12454856; Product type m : membrane component
YP_003057813.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16173498, 15918181, 12454856; Product type m : membrane component
YP_003057814.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_003057815.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 1656497, 6284712; Product type ph : phenotype
YP_003057816.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057817.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_003057818.1	Evidence 4c : Only in epsilon proteobacteria; Product type pm :  membrane component
YP_003057819.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 2536685; Product type pt : transporter
YP_003057820.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16597971, 16427080, 15358361, 15063614; Product type pe :  enzyme
YP_003057821.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9529885; Product type pt : transporter
YP_003057822.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_003057823.1	Evidence 1a : Function experimentally demonstrated in the studied strain; Product type m : membrane component
YP_003057824.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 17526692, 12867454, 91162636, 2521622, 1848300; Product type t : transporter
YP_003057825.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3027504, 15795228; Product type t : transporter
YP_003057826.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3027504, 15795228; Product type t : transporter
YP_003057827.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15795228, 12010975, 8360165; Product type t : transporter
YP_003057828.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12010975, 9142743, 3027504; Product type t : transporter
YP_003057829.1	Evidence 4a : Only in Helicobacter pylori
YP_003057830.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15050034, 8661924; Product type t : transporter
YP_003057831.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt :  transporter
YP_003057832.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16102915, 15939494, 14742532, 12454143, 16322107, 16173498, 15918181; Product type m : membrane component
YP_003057833.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16511068, 12571059, 11444965, 11437593, 3299264; Product type e : enzyme
YP_003057834.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_003057835.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16177292, 15678184, 11065368, 8853292; Product type pt :  transporter
YP_003057836.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt :  transporter
YP_003057837.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12012333; Product type pe :  enzyme
YP_003057838.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt :  transporter
YP_003057839.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt :  transporter
YP_003057840.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 20138160; Product type pt : transporter
YP_003057841.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16539401, 16459077, 16202223, 9811652, 8673298; Product type e : enzyme
YP_003057842.1	Evidence 4a : Only in Helicobacter pylori
YP_003057843.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12071715, 15300892, 15752328, 15313252, 12071715; Product type e : enzyme
YP_003057844.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_003057845.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12798993, 11208792, 9916106, 9831648; Product type e : enzyme
YP_003057846.1	Evidence 4a : Only in Helicobacter pylori
YP_003057847.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 1447221, 10884227; Product type pe : enzyme
YP_003057848.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_003057849.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_003057850.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_003057851.1	[DNA-directed RNA polymerase subunit beta (transcriptase subunit beta) (RNA polymerase subunit beta); DNA-directed RNA polymerase subunit beta' (transcriptase subunit beta') (RNA polymerase subunit beta'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; fusion of rpoB and rpoC; beta and beta' subunits are part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_003057852.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_003057853.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_003057854.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_003057855.1	binds directly to 23S ribosomal RNA
YP_003057856.1	Modulates Rho-dependent transcription termination
YP_003057857.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_003057858.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_003057859.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_003057860.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003057861.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8702766; Product type e : enzyme
YP_003057862.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 2277628, 7607512, 7663118, 20576144, 98012982, 21126955; Product type e : enzyme
YP_003057863.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10672045, 11395450, 16481326, 15516574, 10930739; Product type e : enzyme
YP_003057864.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_003057865.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8825779, 16428774, 16299002, 16282984, 16275923, 16237005; Product type e : enzyme
YP_003057866.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057867.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 95110156, 12207697; Product type m : membrane component
YP_003057868.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057869.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 98047359, 15271960, 9683487; Product type e : enzyme
YP_003057870.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 98254124, 99449617, 16399363, 16400872; Product type t : transporter
YP_003057871.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_003057872.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057873.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057874.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_003057875.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_003057876.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_003057877.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pc :  carrier
YP_003057878.1	hydrolyzes diadenosine polyphosphate
YP_003057879.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_003057880.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 17645450, 17683397; Product type f : factor
YP_003057881.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_003057882.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15554970, 16553853, 16503987, 15554970, 10817704, 10471557, 8586264; Product type e : enzyme
YP_003057883.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057884.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pm :  membrane component
YP_003057885.1	Evidence 4c : Only in epsilon proteobacteria; Product type pm :  membrane component
YP_003057886.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057887.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_003057888.1	formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate
YP_003057889.1	Evidence 4a : Only in Helicobacter pylori
YP_003057890.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_003057891.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003057892.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057893.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_003057894.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_003057895.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_003057896.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_003057897.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16563345, 15664199, 11948193, 9603904, 1400189; Product type e : enzyme
YP_003057898.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_003057899.1	Evidence 4a : Only in Helicobacter pylori
YP_003057900.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003057901.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003057902.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003057903.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme
YP_003057904.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15039361, 14659543, 9184221, 16677301, 16428426, 16154141, 15546659; Product type t : transporter
YP_003057905.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_003057906.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_003057907.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057908.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 7498786, 10381378; Product type pe : enzyme
YP_003057909.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_003057910.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_003057911.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_003057912.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003057913.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15922336; Product type e : enzyme
YP_003057914.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15922336, 15922336; Product type e : enzyme
YP_003057915.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_003057916.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003057917.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003057918.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003057919.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003057920.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_003057921.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003057922.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003057923.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 7715450; Product type pf :  factor
YP_003057924.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1712067; Product type pe :  enzyme
YP_003057925.1	Evidence 4a : Only in Helicobacter pylori
YP_003057926.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_003057927.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_003057928.1	[Indole-3-glycerol phosphate synthase, N-terminal (IGPS); N-(5-phosphoribosyl)anthranilate isomerase, C-terminal (PRAI)]; monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate
YP_003057929.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_003057930.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_003057931.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_003057932.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003057933.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11395461, 10760156; Product type pm : membrane component
YP_003057934.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057935.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8662211, 1898926; Product type r : regulator
YP_003057936.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16699190, 15795230, 7929447; Product type e : enzyme
YP_003057937.1	Evidence 4a : Only in Helicobacter pylori; Product type pm :  membrane component
YP_003057938.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15968063, 2546921, 2198247, 1991724; Product type pt :  transporter
YP_003057939.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16728979, 15150256, 11435118; Product type pe :  enzyme
YP_003057940.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_003057941.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_003057942.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_003057943.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_003057944.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_003057945.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_003057946.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_003057947.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_003057948.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_003057949.1	late assembly protein
YP_003057950.2	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_003057951.2	binds 5S rRNA along with protein L5 and L25
YP_003057952.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_003057953.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_003057954.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_003057955.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_003057956.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_003057957.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_003057958.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_003057959.1	one of the stabilizing components for the large ribosomal subunit
YP_003057960.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_003057961.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_003057962.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_003057963.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_003057964.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_003057965.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_003057966.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_003057967.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_003057968.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_003057969.1	Evidence 4b : Only in Helicobacter genus
YP_003057970.1	Evidence 4a : Only in Helicobacter pylori
YP_003057971.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_003057972.1	Evidence 4a : Only in Helicobacter pylori
YP_003057973.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_003057974.1	Evidence 4a : Only in Helicobacter pylori
YP_003057975.1	Evidence 4b : Only in Helicobacter genus
YP_003057976.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12877469, 11023484, 12877469, 10473554; Product type pt :  transporter
YP_003057977.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12877469, 11023484, 12877469, 10473554; Product type pt :  transporter
YP_003057978.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9287000, 11162545; Product type pt : transporter
YP_003057979.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9287000, 11162545; Product type pt : transporter
YP_003057980.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_003057981.1	Evidence 4a : Only in Helicobacter pylori
YP_003057982.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_003057983.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057984.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10894752, 11704676; Product type pe : enzyme
YP_003057985.1	Inhibits transcription at high concentrations of nickel
YP_003057986.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12890020, 16321934, 15819630, 2670903, 9643536, 981166, 7642501, 9159515; Product type t : transporter
YP_003057987.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12890020, 16321934, 15819630, 9643536, 9811664, 9371459, 7642501; Product type t : transporter
YP_003057988.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10931324; Product type t : transporter
YP_003057989.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16173498, 15918181, 12454856; Product type m : membrane component
YP_003057990.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11016400, 10069007; Product type pt : transporter
YP_003057991.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12065537, 16857941, 16720382, 16598263, 16179994, 15516579, 15231793; Product type t : transporter
YP_003057992.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_003057993.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 15250823, 16527864; Product type pe : enzyme
YP_003057994.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_003057995.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16151217, 10361297, 8748025; Product type pe :  enzyme
YP_003057996.1	Evidence 4c : Only in epsilon proteobacteria
YP_003057997.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7845208, 10966643, 9141685, 8576225, 7499412, 1856173; Product type e : enzyme
YP_003057998.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003057999.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058000.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003058001.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003058002.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003058003.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12034832, 11703661, 11166995, 11133936, 11226310; Product type e : enzyme
YP_003058004.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12034832, 11703661, 11166995, 11133936, 11226310; Product type e : enzyme
YP_003058005.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_003058006.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_003058007.1	[Contains: phosphatidylserine decarboxylase alpha chain; phosphatidylserine decarboxylase beta chain]; catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_003058008.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058009.1	Evidence 4a : Only in Helicobacter pylori
YP_003058010.1	UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin
YP_003058011.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003058012.1	unwinds double stranded DNA
YP_003058013.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058014.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058015.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type r : regulator
YP_003058016.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003058017.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_003058018.1	functions in MreBCD complex in some organisms
YP_003058019.1	binds and unfolds substrates as part of the ClpXP protease
YP_003058020.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_003058021.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_003058022.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_003058023.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058024.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15606774, 11325926, 7961402; Product type e : enzyme
YP_003058025.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
YP_003058026.1	Evidence 4a : Only in Helicobacter pylori
YP_003058027.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003058028.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12426350; Product type pe :  enzyme
YP_003058029.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12426350; Product type pe :  enzyme
YP_003058030.1	catalyzes the formation of biotin from dethiobiotin and sulfur
YP_003058031.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15764599, 10625642; Product type e : enzyme
YP_003058033.1	Evidence 4a : Only in Helicobacter pylori
YP_003058034.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_003058035.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058036.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_003058037.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9334165; Product type pe :  enzyme
YP_003058038.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_003058039.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_003058040.1	involved in type III protein export during flagellum assembly
YP_003058041.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003058042.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_003058043.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf :  factor
YP_003058044.1	Evidence 4a : Only in Helicobacter pylori
YP_003058045.1	Evidence 4a : Only in Helicobacter pylori
YP_003058046.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_003058047.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16199563, 11956197; Product type pe : enzyme
YP_003058048.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15831787; Product type e : enzyme
YP_003058049.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_003058050.1	Evidence 5 : No homology to any previously reported sequences
YP_003058051.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003058052.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 94042872, 7868604; Product type e : enzyme
YP_003058053.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1598279, 15819627, 12791143, 86250892, 87222172; Product type e : enzyme
YP_003058054.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058055.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058056.1	Evidence 4a : Only in Helicobacter pylori
YP_003058057.1	Evidence 4a : Only in Helicobacter pylori
YP_003058058.1	Evidence 4b : Only in Helicobacter genus
YP_003058059.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15479239, 12089032, 9748346, 9268657, 8022278; Product type e : enzyme
YP_003058060.1	affects carbohydrate metabolism, has regulatory role in many processes
YP_003058061.1	catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis
YP_003058062.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_003058063.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16741124, 12890020, 9811664, 9643536, 9159515, 7642501, 2670903; Product type t : transporter
YP_003058064.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16741124, 12890020, 9811664, 9643536, 9159515, 7642501, 2670903; Product type t : transporter
YP_003058065.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_003058066.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12799461, 11376143, 9180701, 1689306, 1374553; Product type e : enzyme
YP_003058067.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058068.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_003058069.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058070.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_003058071.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9430586, 9252185; Product type m : membrane component
YP_003058072.1	Evidence 5 : No homology to any previously reported sequences
YP_003058073.1	Evidence 4a : Only in Helicobacter pylori
YP_003058074.1	Evidence 4a : Only in Helicobacter pylori
YP_003058075.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16484186, 1282312, 12738392, 11211867, 10816482, 7928954; Product type lp : lipoprotein
YP_003058076.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058077.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16354674, 12832786, 12399485, 11222594, 10671551; Product type f : factor
YP_003058078.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16712869, 12762017, 12581659, 11720289, 10902565, 7612632; Product type e : enzyme
YP_003058079.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_003058080.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8591033; Product type pe :  enzyme
YP_003058081.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058082.1	Evidence 4a : Only in Helicobacter pylori
YP_003058083.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9658016, 8367727; Product type t : transporter
YP_003058084.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10518715; Product type t : transporter
YP_003058085.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9658016, 8367727; Product type t : transporter
YP_003058086.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type m : membrane component
YP_003058087.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_003058088.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 10454640; Product type m : membrane component
YP_003058089.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16421093, 14712068, 12649320, 11283163, 8451181; Product type e : enzyme
YP_003058090.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058091.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_003058092.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_003058093.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_003058094.1	required for the assembly of the flagellar basal body P-ring
YP_003058095.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16135232, 15375374, 12527299, 11004168, 11879732; Product type e : enzyme
YP_003058096.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058097.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003058098.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 11380987, 7987228; Product type pe : enzyme
YP_003058099.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_003058100.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_003058101.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pm :  membrane component
YP_003058102.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058103.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt :  transporter
YP_003058104.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003058105.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pt :  transporter
YP_003058106.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003058107.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16177343, 10531273; Product type pm : membrane component
YP_003058108.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7732001; Product type t : transporter
YP_003058109.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8875867, 8048161; Product type pf : factor
YP_003058110.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058111.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_003058112.1	Important for the balance of metabolites in the pentose-phosphate pathway
YP_003058113.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_003058114.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_003058115.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003058116.1	Evidence 4a : Only in Helicobacter pylori
YP_003058117.1	Evidence 6 : Doubtful CDS
YP_003058118.1	Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 16322107, 16173498, 15918181, 12454856, 11925614, 9252185; Product type m : membrane component
YP_003058119.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pm :  membrane component
YP_003058120.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16804172, 9440521, 9244252, 9398888, 16269744, 12974640, 9188683; Product type t : transporter
YP_003058121.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058122.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11024263, 9068650; Product type e : enzyme
YP_003058123.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12664155, 2254324, 8596452, 2017136; Product type t : transporter
YP_003058124.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 17513436; Product type pe :  enzyme
YP_003058125.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16645308, 16143852, 15134648, 12709048, 11734195, 9785959; Product type c : carrier
YP_003058126.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_003058127.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9651328; Product type e : enzyme
YP_003058128.1	Evidence 4a : Only in Helicobacter pylori
YP_003058129.1	Evidence 2b : Function of strongly homologous gene; PubMedId : 12704139, 12165031, 16914236; Product type m : membrane component
YP_003058130.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_003058131.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_003058132.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058133.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16217547, 14711809, 12490707, 12426350, 12034832, 11956101, 11703661; Product type pe : enzyme
YP_003058134.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12426350, 2837577; Product type e : enzyme
YP_003058135.1	catalyzes branch migration in Holliday junction intermediates
YP_003058136.1	Evidence 4a : Only in Helicobacter pylori
YP_003058137.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm :  membrane component
YP_003058138.1	AP endonuclease xth family; multifunctional DNA repair protein; has AP endonuclease, 3'-5' exonuclease, ribonuclease H, and 3'-phosphomonoesterase activities.
YP_003058139.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16436074, 16428391, 15516585, 12933898, 12868652, 1148912, 1086902; Product type f : factor
YP_003058140.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_003058141.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 9058966; Product type e : enzyme
YP_003058142.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058143.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_003058144.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_003058145.1	Evidence 4a : Only in Helicobacter pylori
YP_003058146.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16217547, 14711809, 12490707, 12426350, 12034832, 11956101, 11703661; Product type pe : enzyme
YP_003058147.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16217547, 14711809, 12490707, 12426350, 12034832, 11956101, 11703661; Product type e : enzyme
YP_003058148.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16217547, 14711809, 12490707, 12426350, 12034832, 11956101, 11703661; Product type e : enzyme
YP_003058149.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058150.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 10713425, 12165031, 16718597, 16333751, 16193283, 12948487, 12732308; Product type t : transporter
YP_003058151.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 16672598, 15128304, 11717441, 10931887, 10572136, 7540694; Product type e : enzyme
YP_003058152.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16816198, 12193615, 9168598; Product type e : enzyme
YP_003058153.1	Evidence 4a : Only in Helicobacter pylori
YP_003058154.1	Evidence 1a : Function experimentally demonstrated in the studied strain; Product type m : membrane component
YP_003058155.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16511117, 11488932, 11006082; Product type e : enzyme
YP_003058156.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16780573, 16079351, 15948952, 15186413, 12670973, 11807051; Product type cp : cell process
YP_003058157.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf :  factor
YP_003058158.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058159.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16789826; Product type h : extrachromosomal origin
YP_003058160.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16789826; Product type h : extrachromosomal origin
YP_003058161.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16789826; Product type h : extrachromosomal origin
YP_003058162.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16789826; Product type h : extrachromosomal origin
YP_003058163.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16789826; Product type h : extrachromosomal origin
YP_003058164.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16789826; Product type h : extrachromosomal origin
YP_003058165.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16789826; Product type h : extrachromosomal origin
YP_003058166.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003058167.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16788065, 15516563, 10986230, 10537187, 9987116; Product type e : enzyme
YP_003058168.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058169.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058170.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11777911, 10748053, 99369890, 16040986; Product type f : factor
YP_003058171.1	3'-5' exonuclease of DNA polymerase III
YP_003058172.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_003058173.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_003058174.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058175.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 16217547, 14711809, 12490707, 12426350, 12034832, 11956101, 11703661; Product type pe : enzyme
YP_003058176.1	Evidence 4a : Only in Helicobacter pylori
YP_003058177.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15262969, 12672829; Product type e : enzyme
YP_003058178.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15262969, 12672829; Product type e : enzyme
YP_003058179.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15262969, 12672829; Product type e : enzyme
YP_003058180.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16551743, 16511235, 16469698, 16309703, 15720542; Product type f : factor
YP_003058181.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058182.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7523253, 9457886; Product type e : enzyme
YP_003058183.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7523253, 9457886; Product type e : enzyme
YP_003058184.1	[Folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolate synthase) (Tetrahydrofolylpolyglutamate synthase); Dihydrofolate synthase]; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8304196, 9618466; Product type e : enzyme
YP_003058185.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058186.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_003058187.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pm :  membrane component
YP_003058188.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_003058189.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_003058190.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_003058191.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_003058192.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 91267926, 9288744; Product type e : enzyme
YP_003058193.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_003058194.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_003058195.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 83296957, 96404787, 98268991, 99058131, 98190796, 91207040; Product type e : enzyme
YP_003058196.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_003058197.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_003058198.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_003058199.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 16040206, 15773984, 15752189, 15576787; Product type cp : cell process
YP_003058200.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
YP_003058201.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 11843959, 15102813, 8041738; Product type e : enzyme
YP_003058202.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12169620; Product type lp : lipoprotein
YP_003058203.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11181392; Product type e : enzyme
YP_003058204.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058205.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_003058206.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058207.1	Evidence 4c : Only in epsilon proteobacteria
YP_003058208.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12639950; Product type e : enzyme
YP_003058209.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 3316191; Product type lp : lipoprotein
YP_003058210.1	Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 15694856, 10469189, 10368145; Product type e : enzyme
YP_003058211.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10747959; Product type e : enzyme
YP_003058212.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_003058213.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058214.1	part of the metNIQ transport system for methionine
YP_003058215.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12218041, 9294450; Product type t : transporter
YP_003058216.1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe :  enzyme
YP_003058217.1	Evidence 4a : Only in Helicobacter pylori
YP_003058218.1	Evidence 4 : Homologs of previously reported genes of unknown function; Product type pe :  enzyme
YP_003058219.1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 15908345, 1575219, 11832520, 11700352, 10629198; Product type e : enzyme
YP_003058220.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_003058221.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_003058222.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_003058223.1	makes up the distal portion of the flagellar basal body rod
YP_003058224.1	Evidence 5 : No homology to any previously reported sequences
YP_003058225.1	Evidence 4a : Only in Helicobacter pylori
YP_003058226.1	Evidence 4 : Homologs of previously reported genes of unknown function
YP_003058227.1	Evidence 4 : Homologs of previously reported genes of unknown function