-- dump date 20140619_113353 -- class Genbank::CDS -- table cds_note -- id note YP_005779742.1 COG0781 Transcription termination factor YP_005779743.1 COG0054 Riboflavin synthase beta-chain YP_005779744.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase YP_005779745.1 COG0288 Carbonic anhydrase YP_005779746.1 COG0284 Orotidine-5'-phosphate decarboxylase YP_005779747.1 COG0414 Panthothenate synthetase YP_005779751.1 COG0459 Chaperonin GroEL (HSP60 family) YP_005779752.1 COG0234 Co-chaperonin GroES (HSP10) YP_005779753.1 COG0358 DNA primase (bacterial type) YP_005779754.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_005779758.1 COG3451 Type IV secretory pathway, VirB4 components YP_005779759.1 COG3014 Uncharacterized protein conserved in bacteria YP_005779760.1 COG0835 Chemotaxis signal transduction protein YP_005779761.1 COG0019 Diaminopimelate decarboxylase YP_005779762.1 COG0671 Membrane-associated phospholipid phosphatase YP_005779763.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase YP_005779766.1 COG0372 Citrate synthase YP_005779767.1 COG0538 Isocitrate dehydrogenases YP_005779769.1 COG0132 Dethiobiotin synthetase YP_005779771.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins YP_005779772.1 COG2127 Uncharacterized conserved protein YP_005779773.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_005779774.1 COG0853 Aspartate 1-decarboxylase YP_005779775.1 COG0718 Uncharacterized protein conserved in bacteria YP_005779779.1 COG3736 Type IV secretory pathway, component VirB8 YP_005779780.1 COG3504 Type IV secretory pathway, VirB9 components YP_005779781.1 COG2948 Type IV secretory pathway, VirB10 components YP_005779782.1 COG0836 Mannose-1-phosphate guanylyltransferase YP_005779783.1 COG1089 GDP-D-mannose dehydratase YP_005779784.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_005779787.1 COG0309 Hydrogenase maturation factor YP_005779788.1 COG0068 Hydrogenase maturation factor YP_005779789.1 COG2957 Peptidylarginine deiminase and related enzymes YP_005779790.1 COG0863 DNA modification methylase YP_005779791.1 COG0270 Site-specific DNA methylase YP_005779792.1 COG2189 Adenine specific DNA methylase Mod YP_005779796.1 COG0270 Site-specific DNA methylase YP_005779797.1 COG0591 Na+/proline symporter YP_005779798.1 COG0506 Proline dehydrogenase YP_005779808.1 COG0829 Urease accessory protein UreH YP_005779809.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase YP_005779810.1 COG0830 Urease accessory protein UreF YP_005779811.1 COG2371 Urease accessory protein UreE YP_005779812.1 COG1138 Cytochrome c biogenesis factor YP_005779813.1 COG0804 Urea amidohydrolase (urease) alpha subunit YP_005779814.1 COG0831 Urea amidohydrolase (urease) gamma subunit YP_005779815.1 COG0597 Lipoprotein signal peptidase YP_005779816.1 COG1109 Phosphomannomutase YP_005779817.1 COG0268 Ribosomal protein S20 YP_005779818.1 COG0216 Protein chain release factor A YP_005779823.1 COG0840 Methyl-accepting chemotaxis protein YP_005779825.1 COG0103 Ribosomal protein S9 YP_005779826.1 COG0102 Ribosomal protein L13 YP_005779829.1 COG0579 Predicted dehydrogenase YP_005779830.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) YP_005779831.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005779832.1 COG0775 Nucleoside phosphorylase YP_005779833.1 COG0331 (acyl-carrier-protein) S-malonyltransferase YP_005779834.1 COG2958 Uncharacterized protein conserved in bacteria YP_005779835.1 COG0863 DNA modification methylase YP_005779836.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component YP_005779837.1 COG1052 Lactate dehydrogenase and related dehydrogenases YP_005779839.1 COG0498 Threonine synthase YP_005779840.1 COG0840 Methyl-accepting chemotaxis protein YP_005779841.1 COG1636 Uncharacterized protein conserved in bacteria YP_005779843.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005779844.1 COG0840 Methyl-accepting chemotaxis protein YP_005779845.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases YP_005779846.1 COG1854 LuxS protein involved in autoinducer AI2 synthesis YP_005779847.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases YP_005779848.1 COG0031 Cysteine synthase YP_005779849.1 COG0443 Molecular chaperone YP_005779850.1 COG0576 Molecular chaperone GrpE (heat shock protein) YP_005779851.1 COG1420 Transcriptional regulator of heat shock gene YP_005779852.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases YP_005779854.1 COG2604 Uncharacterized protein conserved in bacteria YP_005779855.1 COG1344 Flagellin and related hook-associated proteins YP_005779856.1 COG0550 Topoisomerase IA YP_005779857.1 COG0731 Fe-S oxidoreductases YP_005779859.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_005779861.1 COG0441 Threonyl-tRNA synthetase YP_005779862.1 COG0290 Translation initiation factor 3 (IF-3) YP_005779863.1 COG0291 Ribosomal protein L35 YP_005779864.1 COG0292 Ribosomal protein L20 YP_005779868.1 COG1760 L-serine deaminase YP_005779869.1 COG0814 Amino acid permeases YP_005779870.1 COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase YP_005779872.1 COG1225 Peroxiredoxin YP_005779873.1 COG1556 Uncharacterized conserved protein YP_005779874.1 COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain YP_005779875.1 COG0247 Fe-S oxidoreductase YP_005779876.1 COG1620 L-lactate permease YP_005779877.1 COG1620 L-lactate permease YP_005779878.1 COG1194 A/G-specific DNA glycosylase YP_005779879.1 COG0471 Di- and tricarboxylate transporters YP_005779880.1 COG3278 Cbb3-type cytochrome oxidase, subunit 1 YP_005779881.1 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit YP_005779883.1 COG2010 Cytochrome c, mono- and diheme variants YP_005779886.1 COG0443 Molecular chaperone YP_005779889.1 COG2107 Predicted periplasmic solute-binding protein YP_005779890.1 COG0468 RecA/RadA recombinase YP_005779891.1 COG0148 Enolase YP_005779894.1 COG0703 Shikimate kinase YP_005779896.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005779897.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005779898.1 COG0217 Uncharacterized conserved protein YP_005779899.1 COG0113 Delta-aminolevulinic acid dehydratase YP_005779900.1 COG0642 Signal transduction histidine kinase YP_005779901.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005779904.1 COG0457 FOG: TPR repeat YP_005779905.1 COG0826 Collagenase and related proteases YP_005779907.1 COG1186 Protein chain release factor B YP_005779908.1 COG0303 Molybdopterin biosynthesis enzyme YP_005779909.1 COG1684 Flagellar biosynthesis pathway, component FliR YP_005779912.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005779913.1 COG0191 Fructose/tagatose bisphosphate aldolase YP_005779914.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) YP_005779915.1 COG2089 Sialic acid synthase YP_005779916.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005779917.1 COG0815 Apolipoprotein N-acyltransferase YP_005779918.1 COG1286 Uncharacterized membrane protein, required for colicin V production YP_005779919.1 COG1190 Lysyl-tRNA synthetase (class II) YP_005779920.1 COG0112 Glycine/serine hydroxymethyltransferase YP_005779923.1 COG1479 Uncharacterized conserved protein YP_005779924.1 COG2862 Predicted membrane protein YP_005779925.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_005779926.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit YP_005779927.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_005779928.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_005779929.1 COG0149 Triosephosphate isomerase YP_005779930.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_005779931.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_005779944.1 COG5410 Uncharacterized protein conserved in bacteria YP_005779956.1 COG0192 S-adenosylmethionine synthetase YP_005779957.1 COG0105 Nucleoside diphosphate kinase YP_005779959.1 COG0333 Ribosomal protein L32 YP_005779960.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme YP_005779961.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_005779965.1 COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog YP_005779966.1 COG0489 ATPases involved in chromosome partitioning YP_005779967.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005779971.1 COG0326 Molecular chaperone, HSP90 family YP_005779972.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005779973.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases YP_005779974.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division YP_005779975.1 COG0471 Di- and tricarboxylate transporters YP_005779976.1 COG0575 CDP-diglyceride synthetase YP_005779977.1 COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005779978.1 COG1881 Phospholipid-binding protein YP_005779980.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005779981.1 COG0822 NifU homolog involved in Fe-S cluster formation YP_005779983.1 COG1066 Predicted ATP-dependent serine protease YP_005779984.1 COG0225 Peptide methionine sulfoxide reductase YP_005779986.1 COG0730 Predicted permeases YP_005779989.1 COG0659 Sulfate permease and related transporters (MFS superfamily) YP_005779991.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_005779992.1 COG1651 Protein-disulfide isomerase YP_005779994.1 COG0754 Glutathionylspermidine synthase YP_005779998.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005780000.1 COG0181 Porphobilinogen deaminase YP_005780001.1 COG0442 Prolyl-tRNA synthetase YP_005780002.1 COG0373 Glutamyl-tRNA reductase YP_005780003.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_005780004.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005780006.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) YP_005780007.1 COG0642 Signal transduction histidine kinase YP_005780009.1 COG1706 Flagellar basal-body P-ring protein YP_005780010.1 COG0513 Superfamily II DNA and RNA helicases YP_005780011.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005780013.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase YP_005780014.1 COG4239 ABC-type uncharacterized transport system, permease component YP_005780017.1 COG1066 Predicted ATP-dependent serine protease YP_005780018.1 COG0104 Adenylosuccinate synthase YP_005780020.1 COG3334 Uncharacterized conserved protein YP_005780021.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_005780022.1 COG1570 Exonuclease VII, large subunit YP_005780023.1 COG2189 Adenine specific DNA methylase Mod YP_005780025.1 COG0863 DNA modification methylase YP_005780026.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_005780027.1 COG0785 Cytochrome c biogenesis protein YP_005780028.1 COG0044 Dihydroorotase and related cyclic amidohydrolases YP_005780029.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases YP_005780031.1 COG0621 2-methylthioadenine synthetase YP_005780032.1 COG2121 Uncharacterized protein conserved in bacteria YP_005780036.1 COG0727 Predicted Fe-S-cluster oxidoreductase YP_005780037.1 COG0457 FOG: TPR repeat YP_005780039.1 COG1145 Ferredoxin YP_005780040.1 COG0248 Exopolyphosphatase YP_005780041.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_005780042.1 COG1560 Lauroyl/myristoyl acyltransferase YP_005780043.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase YP_005780044.1 COG3400 Uncharacterized protein conserved in bacteria YP_005780045.1 COG0337 3-dehydroquinate synthetase YP_005780046.1 COG0668 Small-conductance mechanosensitive channel YP_005780047.1 COG0621 2-methylthioadenine synthetase YP_005780048.1 COG0465 ATP-dependent Zn proteases YP_005780052.1 COG0019 Diaminopimelate decarboxylase YP_005780053.1 COG1605 Chorismate mutase YP_005780054.1 COG4866 Uncharacterized conserved protein YP_005780055.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_005780056.1 COG0388 Predicted amidohydrolase YP_005780058.1 COG1344 Flagellin and related hook-associated proteins YP_005780059.1 COG0261 Ribosomal protein L21 YP_005780060.1 COG0211 Ribosomal protein L27 YP_005780061.1 COG0747 ABC-type dipeptide transport system, periplasmic component YP_005780062.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_005780063.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_005780064.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component YP_005780065.1 COG4608 ABC-type oligopeptide transport system, ATPase component YP_005780066.1 COG0536 Predicted GTPase YP_005780069.1 COG0001 Glutamate-1-semialdehyde aminotransferase YP_005780072.1 COG0388 Predicted amidohydrolase YP_005780073.1 COG0726 Predicted xylanase/chitin deacetylase YP_005780075.1 COG0523 Putative GTPases (G3E family) YP_005780076.1 COG0477 Permeases of the major facilitator superfamily YP_005780077.1 COG0842 ABC-type multidrug transport system, permease component YP_005780078.1 COG0842 ABC-type multidrug transport system, permease component YP_005780079.1 COG1131 ABC-type multidrug transport system, ATPase component YP_005780081.1 COG0748 Putative heme iron utilization protein YP_005780082.1 COG0018 Arginyl-tRNA synthetase YP_005780083.1 COG1826 Sec-independent protein secretion pathway components YP_005780084.1 COG0194 Guanylate kinase YP_005780086.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_005780088.1 COG2063 Flagellar basal body L-ring protein YP_005780089.1 COG1083 CMP-N-acetylneuraminic acid synthetase YP_005780090.1 COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase YP_005780091.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins YP_005780092.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase YP_005780093.1 COG0171 NAD synthase YP_005780094.1 COG0059 Ketol-acid reductoisomerase YP_005780095.1 COG2894 Septum formation inhibitor-activating ATPase YP_005780096.1 COG0851 Septum formation topological specificity factor YP_005780097.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_005780098.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) YP_005780099.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005780102.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005780103.1 COG0608 Single-stranded DNA-specific exonuclease YP_005780104.1 COG0504 CTP synthase (UTP-ammonia lyase) YP_005780105.1 COG0671 Membrane-associated phospholipid phosphatase YP_005780106.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein YP_005780107.1 COG1536 Flagellar motor switch protein YP_005780108.1 COG1317 Flagellar biosynthesis/type III secretory pathway protein YP_005780109.1 COG1154 Deoxyxylulose-5-phosphate synthase YP_005780110.1 COG0481 Membrane GTPase LepA YP_005780111.1 COG0553 Superfamily II DNA/RNA helicases, SNF2 family YP_005780114.1 COG4786 Flagellar basal body rod protein YP_005780115.1 COG0477 Permeases of the major facilitator superfamily YP_005780117.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_005780118.1 COG3893 Inactivated superfamily I helicase YP_005780119.1 COG0021 Transketolase YP_005780120.1 COG0196 FAD synthase YP_005780121.1 COG1189 Predicted rRNA methylase YP_005780123.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_005780125.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005780127.1 COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes YP_005780128.1 COG1106 Predicted ATPases YP_005780130.1 COG3376 High-affinity nickel permease YP_005780134.1 COG2608 Copper chaperone YP_005780135.1 COG2217 Cation transport ATPase YP_005780136.1 COG1183 Phosphatidylserine synthase YP_005780138.1 COG0465 ATP-dependent Zn proteases YP_005780139.1 COG2264 Ribosomal protein L11 methylase YP_005780140.1 COG0784 FOG: CheY-like receiver YP_005780144.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_005780145.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) YP_005780146.1 COG0805 Sec-independent protein secretion pathway component TatC YP_005780147.1 COG1826 Sec-independent protein secretion pathway components YP_005780148.1 COG2255 Holliday junction resolvasome, helicase subunit YP_005780149.1 COG0413 Ketopantoate hydroxymethyltransferase YP_005780153.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005780154.1 COG0850 Septum formation inhibitor YP_005780155.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase YP_005780156.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone YP_005780157.1 COG0083 Homoserine kinase YP_005780158.1 COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination YP_005780159.1 COG0532 Translation initiation factor 2 (IF-2; GTPase) YP_005780160.1 COG0858 Ribosome-binding factor A YP_005780161.1 COG0779 Uncharacterized protein conserved in bacteria YP_005780162.1 COG1408 Predicted phosphohydrolases YP_005780164.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005780165.1 COG2404 Predicted phosphohydrolase (DHH superfamily) YP_005780166.1 COG1298 Flagellar biosynthesis pathway, component FlhA YP_005780167.1 COG0184 Ribosomal protein S15P/S13E YP_005780168.1 COG3307 Lipid A core - O-antigen ligase and related enzymes YP_005780169.1 COG0757 3-dehydroquinate dehydratase II YP_005780170.1 COG0006 Xaa-Pro aminopeptidase YP_005780171.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_005780172.1 COG1419 Flagellar GTP-binding protein YP_005780173.1 COG0455 ATPases involved in chromosome partitioning YP_005780174.1 COG1191 DNA-directed RNA polymerase specialized sigma subunit YP_005780175.1 COG1868 Flagellar motor switch protein YP_005780176.1 COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation YP_005780177.1 COG2731 Beta-galactosidase, beta subunit YP_005780178.1 COG4731 Uncharacterized protein conserved in bacteria YP_005780179.1 COG0735 Fe2+/Zn2+ uptake regulation proteins YP_005780180.1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase YP_005780181.1 COG0789 Predicted transcriptional regulators YP_005780182.1 COG2214 DnaJ-class molecular chaperone YP_005780185.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_005780186.1 COG0784 FOG: CheY-like receiver YP_005780187.1 COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase YP_005780188.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_005780189.1 COG0833 Amino acid transporters YP_005780190.1 COG0558 Phosphatidylglycerophosphate synthase YP_005780192.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005780193.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_005780194.1 COG0612 Predicted Zn-dependent peptidases YP_005780195.1 COG0167 Dihydroorotate dehydrogenase YP_005780196.1 COG0855 Polyphosphate kinase YP_005780197.1 COG0732 Restriction endonuclease S subunits YP_005780198.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005780199.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005780200.1 COG2604 Uncharacterized protein conserved in bacteria YP_005780203.1 COG2048 Heterodisulfide reductase, subunit B YP_005780205.1 COG1164 Oligoendopeptidase F YP_005780206.1 COG0475 Kef-type K+ transport systems, membrane components YP_005780208.1 COG0725 ABC-type molybdate transport system, periplasmic component YP_005780209.1 COG4149 ABC-type molybdate transport system, permease component YP_005780210.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component YP_005780211.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005780213.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_005780214.1 COG1217 Predicted membrane GTPase involved in stress response YP_005780215.1 COG0338 Site-specific DNA methylase YP_005780217.1 COG0270 Site-specific DNA methylase YP_005780218.1 COG0753 Catalase YP_005780226.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component YP_005780227.1 COG0227 Ribosomal protein L28 YP_005780229.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005780230.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_005780232.1 COG0824 Predicted thioesterase YP_005780233.1 COG0733 Na+-dependent transporters of the SNF family YP_005780234.1 COG0733 Na+-dependent transporters of the SNF family YP_005780235.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) YP_005780236.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_005780239.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005780240.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005780242.1 COG0277 FAD/FMN-containing dehydrogenases YP_005780243.1 COG0289 Dihydrodipicolinate reductase YP_005780246.1 COG0174 Glutamine synthetase YP_005780247.1 COG1479 Uncharacterized conserved protein YP_005780248.1 COG0359 Ribosomal protein L9 YP_005780249.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit YP_005780250.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit YP_005780251.1 COG1159 GTPase YP_005780252.1 COG3034 Uncharacterized protein conserved in bacteria YP_005780253.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005780255.1 COG0551 Zn-finger domain associated with topoisomerase type I YP_005780259.1 COG3505 Type IV secretory pathway, VirD4 components YP_005780260.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005780262.1 COG2948 Type IV secretory pathway, VirB10 components YP_005780263.1 COG3504 Type IV secretory pathway, VirB9 components YP_005780265.1 COG3736 Type IV secretory pathway, component VirB8 YP_005780274.1 COG0249 Mismatch repair ATPase (MutS family) YP_005780277.1 COG3451 Type IV secretory pathway, VirB4 components YP_005780282.1 COG0419 ATPase involved in DNA repair YP_005780284.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits YP_005780285.1 COG0796 Glutamate racemase YP_005780286.1 COG1158 Transcription termination factor YP_005780287.1 COG0254 Ribosomal protein L31 YP_005780288.1 COG0566 rRNA methylases YP_005780290.1 COG1217 Predicted membrane GTPase involved in stress response YP_005780293.1 COG0825 Acetyl-CoA carboxylase alpha subunit YP_005780294.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_005780295.1 COG0236 Acyl carrier protein YP_005780296.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005780297.1 COG0828 Ribosomal protein S21 YP_005780301.1 COG3059 Predicted membrane protein YP_005780302.1 COG0253 Diaminopimelate epimerase YP_005780303.1 COG0628 Predicted permease YP_005780306.1 COG0535 Predicted Fe-S oxidoreductases YP_005780307.1 COG0012 Predicted GTPase, probable translation factor YP_005780308.1 COG0260 Leucyl aminopeptidase YP_005780309.1 COG0586 Uncharacterized membrane-associated protein YP_005780310.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins YP_005780312.1 COG0698 Ribose 5-phosphate isomerase RpiB YP_005780313.1 COG1994 Zn-dependent proteases YP_005780314.1 COG0681 Signal peptidase I YP_005780315.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase YP_005780316.1 COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily YP_005780318.1 COG4692 Predicted neuraminidase (sialidase) YP_005780319.1 COG0418 Dihydroorotase YP_005780320.1 COG0810 Periplasmic protein TonB, links inner and outer membranes YP_005780322.1 COG1886 Flagellar motor switch/type III secretory pathway protein YP_005780323.1 COG0177 Predicted EndoIII-related endonuclease YP_005780324.1 COG1918 Fe2+ transport system protein A YP_005780326.1 COG1559 Predicted periplasmic solute-binding protein YP_005780327.1 COG1146 Ferredoxin YP_005780328.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_005780329.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit YP_005780330.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_005780331.1 COG5610 Predicted hydrolase (HAD superfamily) YP_005780333.1 COG1495 Disulfide bond formation protein DsbB YP_005780334.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005780335.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein) YP_005780336.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_005780337.1 COG0840 Methyl-accepting chemotaxis protein YP_005780339.1 COG1344 Flagellin and related hook-associated proteins YP_005780340.1 COG2231 Uncharacterized protein related to Endonuclease III YP_005780342.1 COG0407 Uroporphyrinogen-III decarboxylase YP_005780343.1 COG1538 Outer membrane protein YP_005780344.1 COG0845 Membrane-fusion protein YP_005780345.1 COG0841 Cation/multidrug efflux pump YP_005780346.1 COG0015 Adenylosuccinate lyase YP_005780348.1 COG0842 ABC-type multidrug transport system, permease component YP_005780349.1 COG0842 ABC-type multidrug transport system, permease component YP_005780350.1 COG1131 ABC-type multidrug transport system, ATPase component YP_005780352.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_005780353.1 COG0835 Chemotaxis signal transduction protein YP_005780354.1 COG0173 Aspartyl-tRNA synthetase YP_005780355.1 COG0563 Adenylate kinase and related kinases YP_005780356.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005780357.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005780358.1 COG0221 Inorganic pyrophosphatase YP_005780359.1 COG1193 Mismatch repair ATPase (MutS family) YP_005780361.1 COG0773 UDP-N-acetylmuramate-alanine ligase YP_005780362.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_005780363.1 COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis YP_005780364.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase YP_005780365.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005780366.1 COG1479 Uncharacterized conserved protein YP_005780367.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) YP_005780368.1 COG1740 Ni,Fe-hydrogenase I small subunit YP_005780369.1 COG0374 Ni,Fe-hydrogenase I large subunit YP_005780370.1 COG1969 Ni,Fe-hydrogenase I cytochrome b subunit YP_005780371.1 COG0680 Ni,Fe-hydrogenase maturation factor YP_005780376.1 COG0603 Predicted PP-loop superfamily ATPase YP_005780377.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase YP_005780379.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases YP_005780381.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005780382.1 COG0762 Predicted integral membrane protein YP_005780383.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005780384.1 COG1210 UDP-glucose pyrophosphorylase YP_005780386.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase YP_005780387.1 COG1027 Aspartate ammonia-lyase YP_005780388.1 COG1573 Uracil-DNA glycosylase YP_005780390.1 COG0560 Phosphoserine phosphatase YP_005780391.1 COG1528 Ferritin-like protein YP_005780392.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes YP_005780393.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes YP_005780394.1 COG0612 Predicted Zn-dependent peptidases YP_005780396.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_005780397.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005780398.1 COG2956 Predicted N-acetylglucosaminyl transferase YP_005780399.1 COG0328 Ribonuclease HI YP_005780400.1 COG0571 dsRNA-specific ribonuclease YP_005780401.1 COG0082 Chorismate synthase YP_005780403.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_005780404.1 COG0247 Fe-S oxidoreductase YP_005780405.1 COG4889 Predicted helicase YP_005780406.1 COG4889 Predicted helicase YP_005780407.1 COG0846 NAD-dependent protein deacetylases, SIR2 family YP_005780410.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_005780411.1 COG0582 Integrase YP_005780412.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_005780413.1 COG0730 Predicted permeases YP_005780414.1 COG0673 Predicted dehydrogenases and related proteins YP_005780415.1 COG0209 Ribonucleotide reductase, alpha subunit YP_005780418.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_005780419.1 COG1338 Flagellar biosynthesis pathway, component FliP YP_005780420.1 COG4772 Outer membrane receptor for Fe3+-dicitrate YP_005780421.1 COG0370 Fe2+ transport system protein B YP_005780422.1 COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB YP_005780423.1 COG4647 Acetone carboxylase, gamma subunit YP_005780424.1 COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit YP_005780425.1 COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit YP_005780426.1 COG3528 Uncharacterized protein conserved in bacteria YP_005780427.1 COG2031 Short chain fatty acids transporter YP_005780428.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit YP_005780429.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit YP_005780430.1 COG0183 Acetyl-CoA acetyltransferase YP_005780432.1 COG0818 Diacylglycerol kinase YP_005780433.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005780435.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_005780436.1 COG0178 Excinuclease ATPase subunit YP_005780438.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis YP_005780440.1 COG1912 Uncharacterized conserved protein YP_005780442.1 COG1896 Predicted hydrolases of HD superfamily YP_005780443.1 COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog YP_005780444.1 COG1137 ABC-type (unclassified) transport system, ATPase component YP_005780445.1 COG0802 Predicted ATPase or kinase YP_005780446.1 COG2812 DNA polymerase III, gamma/tau subunits YP_005780447.1 COG1279 Lysine efflux permease YP_005780452.1 COG2704 Anaerobic C4-dicarboxylate transporter YP_005780453.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D YP_005780457.1 COG0042 tRNA-dihydrouridine synthase YP_005780458.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_005780462.1 COG0218 Predicted GTPase YP_005780463.1 COG0621 2-methylthioadenine synthetase YP_005780464.1 COG2236 Predicted phosphoribosyltransferases YP_005780465.1 COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase YP_005780466.1 COG1267 Phosphatidylglycerophosphatase A and related proteins YP_005780467.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes YP_005780468.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_005780469.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase YP_005780470.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_005780471.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_005780472.1 COG0772 Bacterial cell division membrane protein YP_005780473.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005780474.1 COG3979 Uncharacterized protein contain chitin-binding domain type 3 YP_005780475.1 COG0220 Predicted S-adenosylmethionine-dependent methyltransferase YP_005780476.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005780477.1 COG2177 Cell division protein YP_005780478.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005780479.1 COG1334 Uncharacterized flagellar protein FlaG YP_005780480.1 COG1345 Flagellar capping protein YP_005780481.1 COG1516 Flagellin-specific chaperone FliS YP_005780483.1 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 YP_005780485.1 COG0388 Predicted amidohydrolase YP_005780486.1 COG2056 Predicted permease YP_005780487.1 COG0534 Na+-driven multidrug efflux pump YP_005780488.1 COG1418 Predicted HD superfamily hydrolase YP_005780489.1 COG0212 5-formyltetrahydrofolate cyclo-ligase YP_005780491.1 COG0552 Signal recognition particle GTPase YP_005780492.1 COG0727 Predicted Fe-S-cluster oxidoreductase YP_005780495.1 COG2896 Molybdenum cofactor biosynthesis enzyme YP_005780496.1 COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A YP_005780497.1 COG1377 Flagellar biosynthesis pathway, component FlhB YP_005780499.1 COG0860 N-acetylmuramoyl-L-alanine amidase YP_005780500.1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase YP_005780501.1 COG0162 Tyrosyl-tRNA synthetase YP_005780502.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005780503.1 COG1758 DNA-directed RNA polymerase, subunit K/omega YP_005780504.1 COG0528 Uridylate kinase YP_005780505.1 COG1427 Predicted periplasmic solute-binding protein YP_005780506.1 COG1049 Aconitase B YP_005780512.1 COG2834 Outer membrane lipoprotein-sorting protein YP_005780513.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_005780514.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component YP_005780517.1 COG0732 Restriction endonuclease S subunits YP_005780518.1 COG2217 Cation transport ATPase YP_005780519.1 COG0606 Predicted ATPase with chaperone activity YP_005780520.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005780521.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_005780522.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_005780525.1 COG0315 Molybdenum cofactor biosynthesis enzyme YP_005780526.1 COG0521 Molybdopterin biosynthesis enzymes YP_005780527.1 COG0314 Molybdopterin converting factor, large subunit YP_005780528.1 COG1977 Molybdopterin converting factor, small subunit YP_005780529.1 COG0807 GTP cyclohydrolase II YP_005780531.1 COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_005780532.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005780533.1 COG1451 Predicted metal-dependent hydrolase YP_005780534.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) YP_005780535.1 COG1580 Flagellar basal body-associated protein YP_005780536.1 COG0742 N6-adenine-specific methylase YP_005780538.1 COG1565 Uncharacterized conserved protein YP_005780539.1 COG0491 Zn-dependent hydrolases, including glyoxylases YP_005780540.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 YP_005780541.1 COG1291 Flagellar motor component YP_005780542.1 COG1360 Flagellar motor protein YP_005780544.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component YP_005780545.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components YP_005780547.1 COG0322 Nuclease subunit of the excinuclease complex YP_005780548.1 COG0460 Homoserine dehydrogenase YP_005780549.1 COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase YP_005780550.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005780551.1 COG0492 Thioredoxin reductase YP_005780552.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005780553.1 COG0724 RNA-binding proteins (RRM domain) YP_005780555.1 COG0356 F0F1-type ATP synthase, subunit a YP_005780556.1 COG0516 IMP dehydrogenase/GMP reductase YP_005780557.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_005780558.1 COG0237 Dephospho-CoA kinase YP_005780559.1 COG0421 Spermidine synthase YP_005780561.1 COG1160 Predicted GTPases YP_005780562.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005780566.1 COG3018 Uncharacterized protein conserved in bacteria YP_005780568.1 COG2067 Long-chain fatty acid transport protein YP_005780569.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases YP_005780570.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase YP_005780572.1 COG0352 Thiamine monophosphate synthase YP_005780573.1 COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase YP_005780574.1 COG2145 Hydroxyethylthiazole kinase, sugar kinase family YP_005780575.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005780576.1 COG0732 Restriction endonuclease S subunits YP_005780577.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005780578.1 COG0671 Membrane-associated phospholipid phosphatase YP_005780579.1 COG2958 Uncharacterized protein conserved in bacteria YP_005780580.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005780581.1 COG0516 IMP dehydrogenase/GMP reductase YP_005780582.1 COG0279 Phosphoheptose isomerase YP_005780583.1 COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase YP_005780584.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_005780585.1 COG0241 Histidinol phosphatase and related phosphatases YP_005780586.1 COG2836 Uncharacterized conserved protein YP_005780587.1 COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor YP_005780590.1 COG0756 dUTPase YP_005780591.1 COG0782 Transcription elongation factor YP_005780592.1 COG0763 Lipid A disaccharide synthetase YP_005780594.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) YP_005780595.1 COG1749 Flagellar hook protein FlgE YP_005780596.1 COG2134 CDP-diacylglycerol pyrophosphatase YP_005780597.1 COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism YP_005780600.1 COG0753 Catalase YP_005780601.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_005780602.1 COG0817 Holliday junction resolvasome, endonuclease subunit YP_005780603.1 COG1432 Uncharacterized conserved protein YP_005780606.1 COG0632 Holliday junction resolvasome, DNA-binding subunit YP_005780608.1 COG0728 Uncharacterized membrane protein, putative virulence factor YP_005780609.1 COG0215 Cysteinyl-tRNA synthetase YP_005780611.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005780612.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components YP_005780613.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component YP_005780614.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005780615.1 COG1607 Acyl-CoA hydrolase YP_005780616.1 COG3041 Uncharacterized protein conserved in bacteria YP_005780619.1 COG3041 Uncharacterized protein conserved in bacteria YP_005780621.1 COG3041 Uncharacterized protein conserved in bacteria YP_005780624.1 COG0409 Hydrogenase maturation factor YP_005780625.1 COG0409 Hydrogenase maturation factor YP_005780626.1 COG0298 Hydrogenase maturation factor YP_005780627.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase YP_005780629.1 COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain YP_005780630.1 COG0282 Acetate kinase YP_005780631.1 COG0280 Phosphotransacetylase YP_005780633.1 COG1843 Flagellar hook capping protein YP_005780634.1 COG1749 Flagellar hook protein FlgE YP_005780636.1 COG0827 Adenine-specific DNA methylase YP_005780642.1 COG1190 Lysyl-tRNA synthetase (class II) YP_005780645.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) YP_005780646.1 COG0670 Integral membrane protein, interacts with FtsH YP_005780647.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_005780650.1 COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog YP_005780651.1 COG0353 Recombinational DNA repair protein (RecF pathway) YP_005780652.1 COG0585 Uncharacterized conserved protein YP_005780653.1 COG0501 Zn-dependent protease with chaperone function YP_005780654.1 COG0302 GTP cyclohydrolase I YP_005780655.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_005780656.1 COG0496 Predicted acid phosphatase YP_005780658.1 COG0720 6-pyruvoyl-tetrahydropterin synthase YP_005780659.1 COG0602 Organic radical activating enzymes YP_005780660.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005780664.1 COG0477 Permeases of the major facilitator superfamily YP_005780665.1 COG1479 Uncharacterized conserved protein YP_005780666.1 COG0765 ABC-type amino acid transport system, permease component YP_005780667.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_005780668.1 COG0787 Alanine racemase YP_005780669.1 COG1115 Na+/alanine symporter YP_005780670.1 COG0665 Glycine/D-amino acid oxidases (deaminating) YP_005780671.1 COG0251 Putative translation initiation inhibitor, yjgF family YP_005780673.1 COG1757 Na+/H+ antiporter YP_005780677.1 COG1576 Uncharacterized conserved protein YP_005780678.1 COG0777 Acetyl-CoA carboxylase beta subunit YP_005780679.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_005780680.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced) YP_005780682.1 COG0778 Nitroreductase YP_005780683.1 COG0682 Prolipoprotein diacylglyceryltransferase YP_005780684.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005780685.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase YP_005780686.1 COG1579 Zn-ribbon protein, possibly nucleic acid-binding YP_005780687.1 COG0327 Uncharacterized conserved protein YP_005780688.1 COG0752 Glycyl-tRNA synthetase, alpha subunit YP_005780689.1 COG0240 Glycerol-3-phosphate dehydrogenase YP_005780691.1 COG0699 Predicted GTPases (dynamin-related) YP_005780694.1 COG3696 Putative silver efflux pump YP_005780695.1 COG0845 Membrane-fusion protein YP_005780697.1 COG0751 Glycyl-tRNA synthetase, beta subunit YP_005780699.1 COG0696 Phosphoglyceromutase YP_005780700.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_005780701.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_005780702.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005780703.1 COG0849 Actin-like ATPase involved in cell division YP_005780704.1 COG0206 Cell division GTPase YP_005780706.1 COG0668 Small-conductance mechanosensitive channel YP_005780708.1 COG3451 Type IV secretory pathway, VirB4 components YP_005780709.1 COG0550 Topoisomerase IA YP_005780710.1 COG3504 Type IV secretory pathway, VirB9 components YP_005780711.1 COG2948 Type IV secretory pathway, VirB10 components YP_005780716.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005780720.1 COG3505 Type IV secretory pathway, VirD4 components YP_005780721.1 COG3041 Uncharacterized protein conserved in bacteria YP_005780725.1 COG1192 ATPases involved in chromosome partitioning YP_005780731.1 COG0582 Integrase YP_005780733.1 COG1598 Uncharacterized conserved protein YP_005780734.1 COG1724 Predicted periplasmic or secreted lipoprotein YP_005780735.1 COG1166 Arginine decarboxylase (spermidine biosynthesis) YP_005780736.1 COG0438 Glycosyltransferase YP_005780737.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism YP_005780738.1 COG0500 SAM-dependent methyltransferases YP_005780740.1 COG0143 Methionyl-tRNA synthetase YP_005780741.1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases YP_005780742.1 COG0668 Small-conductance mechanosensitive channel YP_005780746.1 COG0518 GMP synthase - Glutamine amidotransferase domain YP_005780748.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing YP_005780749.1 COG2987 Urocanate hydratase YP_005780750.1 COG0520 Selenocysteine lyase YP_005780751.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_005780752.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit YP_005780753.1 COG0073 EMAP domain YP_005780754.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase YP_005780755.1 COG0761 Penicillin tolerance protein YP_005780756.1 COG0539 Ribosomal protein S1 YP_005780758.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases YP_005780759.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_005780760.1 COG0325 Predicted enzyme with a TIM-barrel fold YP_005780761.1 COG2908 Uncharacterized protein conserved in bacteria YP_005780762.1 COG0835 Chemotaxis signal transduction protein YP_005780763.1 COG0643 Chemotaxis protein histidine kinase and related kinases YP_005780764.1 COG0835 Chemotaxis signal transduction protein YP_005780765.1 COG2077 Peroxiredoxin YP_005780766.1 COG0605 Superoxide dismutase YP_005780767.1 COG0500 SAM-dependent methyltransferases YP_005780768.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase YP_005780770.1 COG0055 F0F1-type ATP synthase, beta subunit YP_005780773.1 COG0501 Zn-dependent protease with chaperone function YP_005780774.1 COG2890 Methylase of polypeptide chain release factors YP_005780775.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase YP_005780777.1 COG1333 ResB protein required for cytochrome c biosynthesis YP_005780778.1 COG2143 Thioredoxin-related protein YP_005780779.1 COG0276 Protoheme ferro-lyase (ferrochelatase) YP_005780781.1 COG1385 Uncharacterized protein conserved in bacteria YP_005780783.1 COG0717 Deoxycytidine deaminase YP_005780784.1 COG0511 Biotin carboxyl carrier protein YP_005780785.1 COG0439 Biotin carboxylase YP_005780786.1 COG1015 Phosphopentomutase YP_005780789.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis YP_005780790.1 COG0208 Ribonucleotide reductase, beta subunit YP_005780791.1 COG2518 Protein-L-isoaspartate carboxylmethyltransferase YP_005780792.1 COG0795 Predicted permeases YP_005780793.1 COG0101 Pseudouridylate synthase YP_005780794.1 COG1087 UDP-glucose 4-epimerase YP_005780796.1 COG4221 Short-chain alcohol dehydrogenase of unknown specificity YP_005780797.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005780798.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase YP_005780799.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase YP_005780800.1 COG0364 Glucose-6-phosphate 1-dehydrogenase YP_005780801.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase YP_005780802.1 COG0837 Glucokinase YP_005780803.1 COG1064 Zn-dependent alcohol dehydrogenases YP_005780804.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005780805.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005780810.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_005780811.1 COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit YP_005780812.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_005780813.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit YP_005780814.1 COG0015 Adenylosuccinate lyase YP_005780816.1 COG0556 Helicase subunit of the DNA excision repair complex YP_005780820.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005780821.1 COG0405 Gamma-glutamyltransferase YP_005780822.1 COG1256 Flagellar hook-associated protein YP_005780824.1 COG0270 Site-specific DNA methylase YP_005780827.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 YP_005780829.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_005780830.1 COG0823 Periplasmic component of the Tol biopolymer transport system YP_005780832.1 COG0848 Biopolymer transport protein YP_005780833.1 COG0811 Biopolymer transport proteins YP_005780834.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_005780835.1 COG0055 F0F1-type ATP synthase, beta subunit YP_005780836.1 COG0224 F0F1-type ATP synthase, gamma subunit YP_005780837.1 COG0056 F0F1-type ATP synthase, alpha subunit YP_005780839.1 COG0711 F0F1-type ATP synthase, subunit b YP_005780840.1 COG0711 F0F1-type ATP synthase, subunit b YP_005780841.1 COG1475 Predicted transcriptional regulators YP_005780842.1 COG1192 ATPases involved in chromosome partitioning YP_005780843.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase YP_005780844.1 COG0223 Methionyl-tRNA formyltransferase YP_005780845.1 COG4694 Uncharacterized protein conserved in bacteria YP_005780846.1 COG4487 Uncharacterized protein conserved in bacteria YP_005780848.1 COG1432 Uncharacterized conserved protein YP_005780850.1 COG0335 Ribosomal protein L19 YP_005780851.1 COG0336 tRNA-(guanine-N1)-methyltransferase YP_005780852.1 COG0806 RimM protein, required for 16S rRNA processing YP_005780853.1 COG1837 Predicted RNA-binding protein (contains KH domain) YP_005780854.1 COG0228 Ribosomal protein S16 YP_005780855.1 COG0541 Signal recognition particle GTPase YP_005780856.1 COG0525 Valyl-tRNA synthetase YP_005780857.1 COG1699 Uncharacterized protein conserved in bacteria YP_005780858.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase YP_005780862.1 COG0345 Pyrroline-5-carboxylate reductase YP_005780863.1 COG0319 Predicted metal-dependent hydrolase YP_005780864.1 COG0716 Flavodoxins YP_005780865.1 COG0586 Uncharacterized membrane-associated protein YP_005780866.1 COG3197 Uncharacterized protein, possibly involved in nitrogen fixation YP_005780867.1 COG0492 Thioredoxin reductase YP_005780868.1 COG0477 Permeases of the major facilitator superfamily YP_005780869.1 COG0166 Glucose-6-phosphate isomerase YP_005780872.1 COG1966 Carbon starvation protein, predicted membrane protein YP_005780873.1 COG0765 ABC-type amino acid transport system, permease component YP_005780874.1 COG0765 ABC-type amino acid transport system, permease component YP_005780875.1 COG1126 ABC-type polar amino acid transport system, ATPase component YP_005780876.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_005780878.1 COG0738 Fucose permease YP_005780879.1 COG2252 Permeases YP_005780885.1 COG0813 Purine-nucleoside phosphorylase YP_005780886.1 COG1015 Phosphopentomutase YP_005780887.1 COG1972 Nucleoside permease YP_005780888.1 COG0477 Permeases of the major facilitator superfamily YP_005780889.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_005780890.1 COG0475 Kef-type K+ transport systems, membrane components YP_005780891.1 COG0534 Na+-driven multidrug efflux pump YP_005780893.1 COG2814 Arabinose efflux permease YP_005780894.1 COG3338 Carbonic anhydrase YP_005780896.1 COG0136 Aspartate-semialdehyde dehydrogenase YP_005780897.1 COG0124 Histidyl-tRNA synthetase YP_005780898.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_005780900.1 COG0480 Translation elongation factors (GTPases) YP_005780901.1 COG0049 Ribosomal protein S7 YP_005780902.1 COG0048 Ribosomal protein S12 YP_005780903.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005780904.1 COG0222 Ribosomal protein L7/L12 YP_005780905.1 COG0244 Ribosomal protein L10 YP_005780906.1 COG0081 Ribosomal protein L1 YP_005780907.1 COG0080 Ribosomal protein L11 YP_005780908.1 COG0250 Transcription antiterminator YP_005780910.1 COG0267 Ribosomal protein L33 YP_005780911.1 COG0050 GTPases - translation elongation factors YP_005780912.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005780913.1 COG0546 Predicted phosphatases YP_005780914.1 COG3392 Adenine-specific DNA methylase YP_005780916.1 COG1045 Serine acetyltransferase YP_005780917.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K YP_005780918.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) YP_005780919.1 COG1926 Predicted phosphoribosyltransferases YP_005780920.1 COG1452 Organic solvent tolerance protein OstA YP_005780922.1 COG0151 Phosphoribosylamine-glycine ligase YP_005780923.1 COG1131 ABC-type multidrug transport system, ATPase component YP_005780924.1 COG0020 Undecaprenyl pyrophosphate synthase YP_005780925.1 COG0277 FAD/FMN-containing dehydrogenases YP_005780926.1 COG0607 Rhodanese-related sulfurtransferase YP_005780927.1 COG1587 Uroporphyrinogen-III synthase YP_005780928.1 COG0239 Integral membrane protein possibly involved in chromosome condensation YP_005780929.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_005780930.1 COG2863 Cytochrome c553 YP_005780932.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005780933.1 COG0527 Aspartokinases YP_005780935.1 COG0470 ATPase involved in DNA replication YP_005780936.1 COG0294 Dihydropteroate synthase and related enzymes YP_005780939.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily YP_005780941.1 COG2952 Uncharacterized protein conserved in bacteria YP_005780942.1 COG0505 Carbamoylphosphate synthase small subunit YP_005780943.1 COG0388 Predicted amidohydrolase YP_005780946.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation YP_005780947.1 COG0013 Alanyl-tRNA synthetase YP_005780948.1 COG2841 Uncharacterized protein conserved in bacteria YP_005780952.1 COG0238 Ribosomal protein S18 YP_005780953.1 COG0629 Single-stranded DNA-binding protein YP_005780954.1 COG0360 Ribosomal protein S6 YP_005780956.1 COG0557 Exoribonuclease R YP_005780957.1 COG0169 Shikimate 5-dehydrogenase YP_005780959.1 COG4174 ABC-type uncharacterized transport system, permease component YP_005780960.1 COG4166 ABC-type oligopeptide transport system, periplasmic component YP_005780961.1 COG0180 Tryptophanyl-tRNA synthetase YP_005780962.1 COG0500 SAM-dependent methyltransferases YP_005780963.1 COG1314 Preprotein translocase subunit SecG YP_005780964.1 COG0233 Ribosome recycling factor YP_005780965.1 COG0461 Orotate phosphoribosyltransferase YP_005780966.1 COG1714 Predicted membrane protein/domain YP_005780967.1 COG0846 NAD-dependent protein deacetylases, SIR2 family YP_005780968.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) YP_005780969.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases YP_005780971.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit YP_005780972.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_005780975.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_005780976.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) YP_005780977.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_005780978.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) YP_005780979.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) YP_005780980.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_005780981.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) YP_005780982.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) YP_005780983.1 COG1729 Uncharacterized protein conserved in bacteria YP_005780984.1 COG1109 Phosphomannomutase YP_005780986.1 COG0159 Tryptophan synthase alpha chain YP_005780987.1 COG0133 Tryptophan synthase beta chain YP_005780988.1 COG0134 Indole-3-glycerol phosphate synthase YP_005780989.1 COG0547 Anthranilate phosphoribosyltransferase YP_005780990.1 COG0512 Anthranilate/para-aminobenzoate synthases component II YP_005780991.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_005780992.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_005780993.1 COG2503 Predicted secreted acid phosphatase YP_005780994.1 COG2353 Uncharacterized conserved protein YP_005780995.1 COG0819 Putative transcription activator YP_005780998.1 COG3201 Nicotinamide mononucleotide transporter YP_005780999.1 COG1564 Thiamine pyrophosphokinase YP_005781000.1 COG0203 Ribosomal protein L17 YP_005781001.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_005781002.1 COG0522 Ribosomal protein S4 and related proteins YP_005781003.1 COG0100 Ribosomal protein S11 YP_005781004.1 COG0099 Ribosomal protein S13 YP_005781005.1 COG0257 Ribosomal protein L36 YP_005781006.1 COG0361 Translation initiation factor 1 (IF-1) YP_005781007.1 COG0024 Methionine aminopeptidase YP_005781008.1 COG0201 Preprotein translocase subunit SecY YP_005781009.1 COG0200 Ribosomal protein L15 YP_005781010.1 COG0098 Ribosomal protein S5 YP_005781011.1 COG0256 Ribosomal protein L18 YP_005781012.1 COG0097 Ribosomal protein L6P/L9E YP_005781013.1 COG0096 Ribosomal protein S8 YP_005781014.1 COG0199 Ribosomal protein S14 YP_005781015.1 COG0094 Ribosomal protein L5 YP_005781016.1 COG0198 Ribosomal protein L24 YP_005781017.1 COG0093 Ribosomal protein L14 YP_005781018.1 COG0186 Ribosomal protein S17 YP_005781019.1 COG0255 Ribosomal protein L29 YP_005781020.1 COG0197 Ribosomal protein L16/L10E YP_005781021.1 COG0092 Ribosomal protein S3 YP_005781022.1 COG0091 Ribosomal protein L22 YP_005781023.1 COG0185 Ribosomal protein S19 YP_005781024.1 COG0090 Ribosomal protein L2 YP_005781025.1 COG0089 Ribosomal protein L23 YP_005781026.1 COG0088 Ribosomal protein L4 YP_005781027.1 COG0087 Ribosomal protein L3 YP_005781028.1 COG0051 Ribosomal protein S10 YP_005781029.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005781031.1 COG0164 Ribonuclease HII YP_005781033.1 COG0114 Fumarase YP_005781036.1 COG0845 Membrane-fusion protein YP_005781037.1 COG3696 Putative silver efflux pump YP_005781038.1 COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) YP_005781039.1 COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) YP_005781040.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_005781042.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_005781043.1 COG2214 DnaJ-class molecular chaperone YP_005781044.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase YP_005781045.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain YP_005781046.1 COG0811 Biopolymer transport proteins YP_005781047.1 COG0848 Biopolymer transport protein YP_005781048.1 COG0810 Periplasmic protein TonB, links inner and outer membranes YP_005781052.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance YP_005781054.1 COG0598 Mg2+ and Co2+ transporters YP_005781055.1 COG0126 3-phosphoglycerate kinase YP_005781056.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_005781057.1 COG0692 Uracil DNA glycosylase YP_005781058.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005781060.1 COG0793 Periplasmic protease YP_005781062.1 COG0863 DNA modification methylase YP_005781064.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005781065.1 COG0157 Nicotinate-nucleotide pyrophosphorylase YP_005781066.1 COG0379 Quinolinate synthase YP_005781067.1 COG0688 Phosphatidylserine decarboxylase YP_005781070.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases YP_005781071.1 COG0658 Predicted membrane metal-binding protein YP_005781072.1 COG0305 Replicative DNA helicase YP_005781073.1 COG0062 Uncharacterized conserved protein YP_005781074.1 COG0642 Signal transduction histidine kinase YP_005781075.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005781077.1 COG0863 DNA modification methylase YP_005781078.1 COG0863 DNA modification methylase YP_005781079.1 COG2189 Adenine specific DNA methylase Mod YP_005781080.1 COG2189 Adenine specific DNA methylase Mod YP_005781081.1 COG1061 DNA or RNA helicases of superfamily II YP_005781082.1 COG1792 Cell shape-determining protein YP_005781083.1 COG1077 Actin-like ATPase involved in cell morphogenesis YP_005781084.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_005781085.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_005781086.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_005781087.1 COG1699 Uncharacterized protein conserved in bacteria YP_005781089.1 COG4105 DNA uptake lipoprotein YP_005781090.1 COG0466 ATP-dependent Lon protease, bacterial type YP_005781091.1 COG0287 Prephenate dehydrogenase YP_005781093.1 COG1864 DNA/RNA endonuclease G, NUC1 YP_005781094.1 COG2189 Adenine specific DNA methylase Mod YP_005781095.1 COG3421 Uncharacterized protein conserved in bacteria YP_005781096.1 COG0502 Biotin synthase and related enzymes YP_005781097.1 COG1295 Predicted membrane protein YP_005781100.1 COG1479 Uncharacterized conserved protein YP_005781102.1 COG0780 Enzyme related to GTP cyclohydrolase I YP_005781103.1 COG0799 Uncharacterized homolog of plant Iojap protein YP_005781104.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase YP_005781105.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005781106.1 COG0812 UDP-N-acetylmuramate dehydrogenase YP_005781107.1 COG1987 Flagellar biosynthesis pathway, component FliQ YP_005781108.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase YP_005781109.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005781110.1 COG0060 Isoleucyl-tRNA synthetase YP_005781111.1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) YP_005781117.1 COG0030 Dimethyladenosine transferase (rRNA methylation) YP_005781118.1 COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain YP_005781119.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation YP_005781120.1 COG0820 Predicted Fe-S-cluster redox enzyme YP_005781123.1 COG0732 Restriction endonuclease S subunits YP_005781124.1 COG3843 Type IV secretory pathway, VirD2 components (relaxase) YP_005781125.1 COG0582 Integrase YP_005781136.1 COG1192 ATPases involved in chromosome partitioning YP_005781141.1 COG0550 Topoisomerase IA YP_005781145.1 COG3505 Type IV secretory pathway, VirD4 components YP_005781147.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005781149.1 COG0013 Alanyl-tRNA synthetase YP_005781151.1 COG2948 Type IV secretory pathway, VirB10 components YP_005781152.1 COG3504 Type IV secretory pathway, VirB9 components YP_005781153.1 COG3736 Type IV secretory pathway, component VirB8 YP_005781155.1 COG3451 Type IV secretory pathway, VirB4 components YP_005781162.1 COG0732 Restriction endonuclease S subunits YP_005781163.1 COG0788 Formyltetrahydrofolate hydrolase YP_005781164.1 COG0616 Periplasmic serine proteases (ClpP class) YP_005781167.1 COG0807 GTP cyclohydrolase II YP_005781170.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family YP_005781171.1 COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) YP_005781172.1 COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase YP_005781173.1 COG0691 tmRNA-binding protein YP_005781174.1 COG0811 Biopolymer transport proteins YP_005781176.1 COG0848 Biopolymer transport protein YP_005781177.1 COG0230 Ribosomal protein L34 YP_005781178.1 COG0594 RNase P protein component YP_005781179.1 COG0759 Uncharacterized conserved protein YP_005781180.1 COG0706 Preprotein translocase subunit YidC YP_005781181.1 COG1315 Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain YP_005781182.1 COG0486 Predicted GTPase YP_005781189.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005781190.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases YP_005781191.1 COG0587 DNA polymerase III, alpha subunit YP_005781192.1 COG1858 Cytochrome c peroxidase YP_005781193.1 COG3187 Heat shock protein YP_005781195.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_005781196.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_005781197.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component YP_005781199.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase YP_005781201.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_005781203.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005781205.1 COG0125 Thymidylate kinase YP_005781206.1 COG0669 Phosphopantetheine adenylyltransferase YP_005781207.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_005781209.1 COG4108 Peptide chain release factor RF-3 YP_005781210.1 COG0210 Superfamily I DNA and RNA helicases YP_005781211.1 COG0457 FOG: TPR repeat YP_005781212.1 COG0172 Seryl-tRNA synthetase YP_005781213.1 COG0388 Predicted amidohydrolase YP_005781214.1 COG1722 Exonuclease VII small subunit YP_005781215.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis YP_005781216.1 COG1981 Predicted membrane protein YP_005781217.1 COG1739 Uncharacterized conserved protein YP_005781218.1 COG0842 ABC-type multidrug transport system, permease component YP_005781219.1 COG0842 ABC-type multidrug transport system, permease component YP_005781220.1 COG0845 Membrane-fusion protein YP_005781221.1 COG1538 Outer membrane protein YP_005781222.1 COG1253 Hemolysins and related proteins containing CBS domains YP_005781223.1 COG0306 Phosphate/sulphate permeases YP_005781224.1 COG0694 Thioredoxin-like proteins and domains YP_005781226.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase YP_005781227.1 COG0176 Transaldolase YP_005781228.1 COG1825 Ribosomal protein L25 (general stress protein Ctc) YP_005781229.1 COG0193 Peptidyl-tRNA hydrolase YP_005781230.1 COG0795 Predicted permeases YP_005781231.1 COG3392 Adenine-specific DNA methylase YP_005781232.1 COG0338 Site-specific DNA methylase YP_005781235.1 COG3399 Uncharacterized protein conserved in bacteria YP_005781236.1 COG2217 Cation transport ATPase YP_005781237.1 COG4123 Predicted O-methyltransferase YP_005781238.1 COG0117 Pyrimidine deaminase YP_005781239.1 COG0786 Na+/glutamate symporter YP_005781240.1 COG1748 Saccharopine dehydrogenase and related proteins YP_005781241.1 COG0348 Polyferredoxin YP_005781242.1 COG0344 Predicted membrane protein YP_005781243.1 COG1539 Dihydroneopterin aldolase YP_005781245.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_005781246.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] YP_005781247.1 COG0195 Transcription elongation factor YP_005781251.1 COG3587 Restriction endonuclease YP_005781252.1 COG2189 Adenine specific DNA methylase Mod YP_005781253.1 COG2189 Adenine specific DNA methylase Mod YP_005781254.1 COG1200 RecG-like helicase YP_005781257.1 COG0708 Exonuclease III YP_005781259.1 COG0593 ATPase involved in DNA replication initiation YP_005781260.1 COG0813 Purine-nucleoside phosphorylase YP_005781262.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains YP_005781263.1 COG1351 Predicted alternative thymidylate synthase YP_005781267.1 COG0732 Restriction endonuclease S subunits YP_005781268.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005781269.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005781270.1 COG1451 Predicted metal-dependent hydrolase YP_005781271.1 COG4772 Outer membrane receptor for Fe3+-dicitrate YP_005781272.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family YP_005781273.1 COG0686 Alanine dehydrogenase YP_005781274.1 COG1064 Zn-dependent alcohol dehydrogenases YP_005781275.1 COG1479 Uncharacterized conserved protein YP_005781277.1 COG0061 Predicted sugar kinase YP_005781278.1 COG0497 ATPase involved in DNA repair YP_005781279.1 COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP YP_005781281.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005781282.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_005781283.1 COG0036 Pentose-5-phosphate-3-epimerase YP_005781284.1 COG0158 Fructose-1,6-bisphosphatase YP_005781287.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005781288.1 COG0264 Translation elongation factor Ts YP_005781289.1 COG0052 Ribosomal protein S2 YP_005781290.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) YP_005781291.1 COG3004 Na+/H+ antiporter YP_005781292.1 COG1862 Preprotein translocase subunit YajC YP_005781293.1 COG0342 Preprotein translocase subunit SecD YP_005781294.1 COG0341 Preprotein translocase subunit SecF YP_005781296.1 COG0495 Leucyl-tRNA synthetase YP_005781298.1 COG0285 Folylpolyglutamate synthase YP_005781299.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005781300.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005781301.1 COG1664 Integral membrane protein CcmA involved in cell shape determination YP_005781302.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_005781303.1 COG0723 Rieske Fe-S protein YP_005781304.1 COG1290 Cytochrome b subunit of the bc complex YP_005781305.1 COG2010 Cytochrome c, mono- and diheme variants YP_005781307.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase YP_005781308.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005781309.1 COG1677 Flagellar hook-basal body protein YP_005781310.1 COG1558 Flagellar basal body rod protein YP_005781311.1 COG1815 Flagellar basal body protein YP_005781313.1 COG0772 Bacterial cell division membrane protein YP_005781314.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component YP_005781315.1 COG0450 Peroxiredoxin YP_005781317.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen YP_005781319.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005781321.1 COG0218 Predicted GTPase YP_005781322.1 COG1934 Uncharacterized protein conserved in bacteria YP_005781324.1 COG1778 Low specificity phosphatase (HAD superfamily) YP_005781325.1 COG0797 Lipoproteins YP_005781326.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005781327.1 COG0084 Mg-dependent DNase YP_005781328.1 COG0307 Riboflavin synthase alpha chain YP_005781329.1 COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB YP_005781330.1 COG1135 ABC-type metal ion transport system, ATPase component YP_005781331.1 COG2011 ABC-type metal ion transport system, permease component YP_005781334.1 COG0671 Membrane-associated phospholipid phosphatase YP_005781335.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005781336.1 COG0854 Pyridoxal phosphate biosynthesis protein YP_005781337.1 COG1995 Pyridoxal phosphate biosynthesis protein YP_005781338.1 COG0533 Metal-dependent proteases with possible chaperone activity YP_005781339.1 COG4786 Flagellar basal body rod protein YP_005781342.1 COG4735 Uncharacterized protein conserved in bacteria YP_005781344.1 COG4735 Uncharacterized protein conserved in bacteria