-- dump date 20140619_113814 -- class Genbank::CDS -- table cds_note -- id note YP_003926316.1 COG0781 Transcription termination factor YP_003926317.1 COG0054 Riboflavin synthase beta-chain YP_003926318.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase YP_003926319.1 COG0288 Carbonic anhydrase YP_003926320.1 COG0284 Orotidine-5'-phosphate decarboxylase YP_003926321.1 COG0414 Panthothenate synthetase YP_003926323.1 COG0459 Chaperonin GroEL (HSP60 family) YP_003926324.1 COG0234 Co-chaperonin GroES (HSP10) YP_003926325.1 COG0358 DNA primase (bacterial type) YP_003926326.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_003926330.1 COG3451 Type IV secretory pathway, VirB4 components YP_003926331.1 COG3014 Uncharacterized protein conserved in bacteria YP_003926332.1 COG0835 Chemotaxis signal transduction protein YP_003926333.1 COG0019 Diaminopimelate decarboxylase YP_003926334.1 COG0671 Membrane-associated phospholipid phosphatase YP_003926335.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase YP_003926337.1 COG0372 Citrate synthase YP_003926338.1 COG0538 Isocitrate dehydrogenases YP_003926340.1 COG0132 Dethiobiotin synthetase YP_003926342.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins YP_003926343.1 COG2127 Uncharacterized conserved protein YP_003926344.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_003926345.1 COG0853 Aspartate 1-decarboxylase YP_003926346.1 COG0718 Uncharacterized protein conserved in bacteria YP_003926347.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_003926350.1 COG3736 Type IV secretory pathway, component VirB8 YP_003926351.1 COG3504 Type IV secretory pathway, VirB9 components YP_003926352.1 COG2948 Type IV secretory pathway, VirB10 components YP_003926353.1 COG0836 Mannose-1-phosphate guanylyltransferase YP_003926354.1 COG1089 GDP-D-mannose dehydratase YP_003926355.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_003926356.1 COG0309 Hydrogenase maturation factor YP_003926357.1 COG0068 Hydrogenase maturation factor YP_003926358.1 COG2957 Peptidylarginine deiminase and related enzymes YP_003926359.1 COG0270 Site-specific DNA methylase YP_003926360.1 COG0591 Na+/proline symporter YP_003926361.1 COG0506 Proline dehydrogenase YP_003926364.1 COG1511 Predicted membrane protein YP_003926369.1 COG0829 Urease accessory protein UreH YP_003926370.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase YP_003926371.1 COG0830 Urease accessory protein UreF YP_003926372.1 COG2371 Urease accessory protein UreE YP_003926373.1 COG1138 Cytochrome c biogenesis factor YP_003926375.1 COG0804 Urea amidohydrolase (urease) alpha subunit YP_003926376.1 COG0831 Urea amidohydrolase (urease) gamma subunit YP_003926377.1 COG0597 Lipoprotein signal peptidase YP_003926378.1 COG1109 Phosphomannomutase YP_003926379.1 COG0268 Ribosomal protein S20 YP_003926380.1 COG0216 Protein chain release factor A YP_003926384.1 COG0840 Methyl-accepting chemotaxis protein YP_003926386.1 COG0103 Ribosomal protein S9 YP_003926387.1 COG0102 Ribosomal protein L13 YP_003926389.1 COG0579 Predicted dehydrogenase YP_003926390.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) YP_003926391.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_003926392.1 COG0775 Nucleoside phosphorylase YP_003926393.1 COG0331 (acyl-carrier-protein) S-malonyltransferase YP_003926394.1 COG2958 Uncharacterized protein conserved in bacteria YP_003926395.1 COG0863 DNA modification methylase YP_003926397.1 COG1052 Lactate dehydrogenase and related dehydrogenases YP_003926399.1 COG0498 Threonine synthase YP_003926400.1 COG0840 Methyl-accepting chemotaxis protein YP_003926401.1 COG1636 Uncharacterized protein conserved in bacteria YP_003926403.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_003926404.1 COG0840 Methyl-accepting chemotaxis protein YP_003926405.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases YP_003926406.1 COG1854 LuxS protein involved in autoinducer AI2 synthesis YP_003926407.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases YP_003926408.1 COG0031 Cysteine synthase YP_003926410.1 COG0443 Molecular chaperone YP_003926411.1 COG0576 Molecular chaperone GrpE (heat shock protein) YP_003926412.1 COG1420 Transcriptional regulator of heat shock gene YP_003926413.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases YP_003926415.1 COG2604 Uncharacterized protein conserved in bacteria YP_003926416.1 COG1344 Flagellin and related hook-associated proteins YP_003926417.1 COG0550 Topoisomerase IA YP_003926418.1 COG0731 Fe-S oxidoreductases YP_003926421.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_003926423.1 COG0441 Threonyl-tRNA synthetase YP_003926424.1 COG0290 Translation initiation factor 3 (IF-3) YP_003926425.1 COG0291 Ribosomal protein L35 YP_003926426.1 COG0292 Ribosomal protein L20 YP_003926431.1 COG1760 L-serine deaminase YP_003926432.1 COG0814 Amino acid permeases YP_003926434.1 COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase YP_003926437.1 COG1225 Peroxiredoxin YP_003926438.1 COG1556 Uncharacterized conserved protein YP_003926439.1 COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain YP_003926440.1 COG0247 Fe-S oxidoreductase YP_003926441.1 COG1620 L-lactate permease YP_003926442.1 COG1620 L-lactate permease YP_003926443.1 COG1194 A/G-specific DNA glycosylase YP_003926444.1 COG0471 Di- and tricarboxylate transporters YP_003926445.1 COG3278 Cbb3-type cytochrome oxidase, subunit 1 YP_003926446.1 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit YP_003926448.1 COG2010 Cytochrome c, mono- and diheme variants YP_003926451.1 COG0443 Molecular chaperone YP_003926454.1 COG2107 Predicted periplasmic solute-binding protein YP_003926455.1 COG0468 RecA/RadA recombinase YP_003926456.1 COG0148 Enolase YP_003926459.1 COG0703 Shikimate kinase YP_003926461.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003926462.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003926464.1 COG0217 Uncharacterized conserved protein YP_003926465.1 COG0113 Delta-aminolevulinic acid dehydratase YP_003926466.1 COG0642 Signal transduction histidine kinase YP_003926467.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003926469.1 COG0457 FOG: TPR repeat YP_003926470.1 COG0826 Collagenase and related proteases YP_003926471.1 COG0840 Methyl-accepting chemotaxis protein YP_003926472.1 COG1186 Protein chain release factor B YP_003926473.1 COG0303 Molybdopterin biosynthesis enzyme YP_003926474.1 COG1684 Flagellar biosynthesis pathway, component FliR YP_003926475.1 COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB YP_003926476.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_003926477.1 COG0191 Fructose/tagatose bisphosphate aldolase YP_003926478.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) YP_003926479.1 COG2089 Sialic acid synthase YP_003926480.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_003926481.1 COG0815 Apolipoprotein N-acyltransferase YP_003926482.1 COG1286 Uncharacterized membrane protein, required for colicin V production YP_003926483.1 COG1190 Lysyl-tRNA synthetase (class II) YP_003926484.1 COG0112 Glycine/serine hydroxymethyltransferase YP_003926487.1 COG1479 Uncharacterized conserved protein YP_003926488.1 COG2862 Predicted membrane protein YP_003926489.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_003926490.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit YP_003926491.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_003926492.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_003926493.1 COG0149 Triosephosphate isomerase YP_003926494.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_003926495.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003926496.1 COG0192 S-adenosylmethionine synthetase YP_003926497.1 COG0105 Nucleoside diphosphate kinase YP_003926499.1 COG0333 Ribosomal protein L32 YP_003926500.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme YP_003926501.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_003926504.1 COG1129 ABC-type sugar transport system, ATPase component YP_003926505.1 COG0489 ATPases involved in chromosome partitioning YP_003926506.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003926509.1 COG0326 Molecular chaperone, HSP90 family YP_003926510.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003926511.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases YP_003926512.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division YP_003926513.1 COG0471 Di- and tricarboxylate transporters YP_003926514.1 COG0575 CDP-diglyceride synthetase YP_003926515.1 COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003926518.1 COG1881 Phospholipid-binding protein YP_003926520.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_003926521.1 COG0822 NifU homolog involved in Fe-S cluster formation YP_003926523.1 COG1066 Predicted ATP-dependent serine protease YP_003926524.1 COG0225 Peptide methionine sulfoxide reductase YP_003926527.1 COG0730 Predicted permeases YP_003926530.1 COG0659 Sulfate permease and related transporters (MFS superfamily) YP_003926532.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_003926533.1 COG1651 Protein-disulfide isomerase YP_003926535.1 COG0754 Glutathionylspermidine synthase YP_003926537.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003926539.1 COG0181 Porphobilinogen deaminase YP_003926540.1 COG0442 Prolyl-tRNA synthetase YP_003926541.1 COG0373 Glutamyl-tRNA reductase YP_003926542.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_003926545.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) YP_003926546.1 COG0642 Signal transduction histidine kinase YP_003926548.1 COG1706 Flagellar basal-body P-ring protein YP_003926549.1 COG0513 Superfamily II DNA and RNA helicases YP_003926550.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_003926552.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase YP_003926553.1 COG4239 ABC-type uncharacterized transport system, permease component YP_003926557.1 COG0104 Adenylosuccinate synthase YP_003926559.1 COG3334 Uncharacterized conserved protein YP_003926560.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_003926561.1 COG1570 Exonuclease VII, large subunit YP_003926562.1 COG2189 Adenine specific DNA methylase Mod YP_003926564.1 COG0863 DNA modification methylase YP_003926565.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_003926566.1 COG0785 Cytochrome c biogenesis protein YP_003926567.1 COG0044 Dihydroorotase and related cyclic amidohydrolases YP_003926568.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases YP_003926570.1 COG0621 2-methylthioadenine synthetase YP_003926571.1 COG2121 Uncharacterized protein conserved in bacteria YP_003926573.1 COG3166 Tfp pilus assembly protein PilN YP_003926575.1 COG0727 Predicted Fe-S-cluster oxidoreductase YP_003926576.1 COG0457 FOG: TPR repeat YP_003926577.1 COG0134 Indole-3-glycerol phosphate synthase YP_003926578.1 COG1145 Ferredoxin YP_003926579.1 COG0248 Exopolyphosphatase YP_003926580.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003926581.1 COG1560 Lauroyl/myristoyl acyltransferase YP_003926582.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase YP_003926583.1 COG3400 Uncharacterized protein conserved in bacteria YP_003926584.1 COG0337 3-dehydroquinate synthetase YP_003926585.1 COG0668 Small-conductance mechanosensitive channel YP_003926586.1 COG0621 2-methylthioadenine synthetase YP_003926587.1 COG0465 ATP-dependent Zn proteases YP_003926590.1 COG0209 Ribonucleotide reductase, alpha subunit YP_003926591.1 COG0019 Diaminopimelate decarboxylase YP_003926592.1 COG1605 Chorismate mutase YP_003926593.1 COG4866 Uncharacterized conserved protein YP_003926594.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_003926595.1 COG0388 Predicted amidohydrolase YP_003926597.1 COG1344 Flagellin and related hook-associated proteins YP_003926598.1 COG0261 Ribosomal protein L21 YP_003926599.1 COG0211 Ribosomal protein L27 YP_003926600.1 COG0747 ABC-type dipeptide transport system, periplasmic component YP_003926601.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_003926602.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_003926603.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component YP_003926604.1 COG4608 ABC-type oligopeptide transport system, ATPase component YP_003926605.1 COG0536 Predicted GTPase YP_003926608.1 COG0001 Glutamate-1-semialdehyde aminotransferase YP_003926611.1 COG0388 Predicted amidohydrolase YP_003926612.1 COG0726 Predicted xylanase/chitin deacetylase YP_003926613.1 COG0863 DNA modification methylase YP_003926615.1 COG0523 Putative GTPases (G3E family) YP_003926616.1 COG0477 Permeases of the major facilitator superfamily YP_003926617.1 COG0748 Putative heme iron utilization protein YP_003926618.1 COG0018 Arginyl-tRNA synthetase YP_003926619.1 COG1826 Sec-independent protein secretion pathway components YP_003926620.1 COG0194 Guanylate kinase YP_003926622.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_003926624.1 COG2063 Flagellar basal body L-ring protein YP_003926625.1 COG1083 CMP-N-acetylneuraminic acid synthetase YP_003926626.1 COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase YP_003926627.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins YP_003926628.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase YP_003926629.1 COG0171 NAD synthase YP_003926630.1 COG0059 Ketol-acid reductoisomerase YP_003926631.1 COG2894 Septum formation inhibitor-activating ATPase YP_003926632.1 COG0851 Septum formation topological specificity factor YP_003926633.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_003926634.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) YP_003926636.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003926643.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_003926644.1 COG0608 Single-stranded DNA-specific exonuclease YP_003926645.1 COG0504 CTP synthase (UTP-ammonia lyase) YP_003926646.1 COG0671 Membrane-associated phospholipid phosphatase YP_003926647.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein YP_003926648.1 COG1536 Flagellar motor switch protein YP_003926649.1 COG1317 Flagellar biosynthesis/type III secretory pathway protein YP_003926650.1 COG1154 Deoxyxylulose-5-phosphate synthase YP_003926651.1 COG0481 Membrane GTPase LepA YP_003926653.1 COG4786 Flagellar basal body rod protein YP_003926654.1 COG0477 Permeases of the major facilitator superfamily YP_003926655.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_003926656.1 COG3893 Inactivated superfamily I helicase YP_003926657.1 COG0021 Transketolase YP_003926658.1 COG0196 FAD synthase YP_003926659.1 COG1189 Predicted rRNA methylase YP_003926661.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_003926663.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003926665.1 COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes YP_003926666.1 COG3376 High-affinity nickel permease YP_003926670.1 COG2608 Copper chaperone YP_003926671.1 COG2217 Cation transport ATPase YP_003926672.1 COG1183 Phosphatidylserine synthase YP_003926674.1 COG0465 ATP-dependent Zn proteases YP_003926675.1 COG2264 Ribosomal protein L11 methylase YP_003926676.1 COG0784 FOG: CheY-like receiver YP_003926680.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_003926681.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) YP_003926682.1 COG0805 Sec-independent protein secretion pathway component TatC YP_003926683.1 COG1826 Sec-independent protein secretion pathway components YP_003926684.1 COG2255 Holliday junction resolvasome, helicase subunit YP_003926685.1 COG0413 Ketopantoate hydroxymethyltransferase YP_003926689.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003926690.1 COG0850 Septum formation inhibitor YP_003926691.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase YP_003926692.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone YP_003926693.1 COG0083 Homoserine kinase YP_003926694.1 COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination YP_003926695.1 COG0532 Translation initiation factor 2 (IF-2; GTPase) YP_003926696.1 COG0858 Ribosome-binding factor A YP_003926697.1 COG0779 Uncharacterized protein conserved in bacteria YP_003926698.1 COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases YP_003926699.1 COG1408 Predicted phosphohydrolases YP_003926701.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003926702.1 COG2404 Predicted phosphohydrolase (DHH superfamily) YP_003926703.1 COG1298 Flagellar biosynthesis pathway, component FlhA YP_003926704.1 COG0184 Ribosomal protein S15P/S13E YP_003926705.1 COG3307 Lipid A core - O-antigen ligase and related enzymes YP_003926706.1 COG0757 3-dehydroquinate dehydratase II YP_003926707.1 COG0006 Xaa-Pro aminopeptidase YP_003926708.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_003926709.1 COG1419 Flagellar GTP-binding protein YP_003926710.1 COG0455 ATPases involved in chromosome partitioning YP_003926712.1 COG1191 DNA-directed RNA polymerase specialized sigma subunit YP_003926713.1 COG1868 Flagellar motor switch protein YP_003926714.1 COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation YP_003926715.1 COG2731 Beta-galactosidase, beta subunit YP_003926716.1 COG4731 Uncharacterized protein conserved in bacteria YP_003926717.1 COG0735 Fe2+/Zn2+ uptake regulation proteins YP_003926718.1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase YP_003926719.1 COG0789 Predicted transcriptional regulators YP_003926720.1 COG2214 DnaJ-class molecular chaperone YP_003926722.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_003926723.1 COG0784 FOG: CheY-like receiver YP_003926724.1 COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase YP_003926725.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_003926726.1 COG0833 Amino acid transporters YP_003926727.1 COG0558 Phosphatidylglycerophosphate synthase YP_003926730.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_003926731.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_003926732.1 COG0612 Predicted Zn-dependent peptidases YP_003926733.1 COG0167 Dihydroorotate dehydrogenase YP_003926734.1 COG0855 Polyphosphate kinase YP_003926736.1 COG0732 Restriction endonuclease S subunits YP_003926737.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_003926738.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003926739.1 COG2604 Uncharacterized protein conserved in bacteria YP_003926742.1 COG2048 Heterodisulfide reductase, subunit B YP_003926744.1 COG1164 Oligoendopeptidase F YP_003926745.1 COG0475 Kef-type K+ transport systems, membrane components YP_003926747.1 COG0725 ABC-type molybdate transport system, periplasmic component YP_003926748.1 COG4149 ABC-type molybdate transport system, permease component YP_003926749.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component YP_003926750.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_003926753.1 COG0827 Adenine-specific DNA methylase YP_003926754.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003926755.1 COG1217 Predicted membrane GTPase involved in stress response YP_003926756.1 COG0338 Site-specific DNA methylase YP_003926759.1 COG0270 Site-specific DNA methylase YP_003926761.1 COG0753 Catalase YP_003926766.1 COG3676 Transposase and inactivated derivatives YP_003926772.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component YP_003926773.1 COG0227 Ribosomal protein L28 YP_003926776.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_003926777.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_003926779.1 COG0824 Predicted thioesterase YP_003926780.1 COG0733 Na+-dependent transporters of the SNF family YP_003926781.1 COG0733 Na+-dependent transporters of the SNF family YP_003926782.1 COG2829 Outer membrane phospholipase A YP_003926783.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) YP_003926784.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_003926786.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003926787.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_003926789.1 COG0277 FAD/FMN-containing dehydrogenases YP_003926790.1 COG0289 Dihydrodipicolinate reductase YP_003926793.1 COG0174 Glutamine synthetase YP_003926794.1 COG1479 Uncharacterized conserved protein YP_003926795.1 COG0359 Ribosomal protein L9 YP_003926796.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit YP_003926797.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit YP_003926798.1 COG1159 GTPase YP_003926799.1 COG3034 Uncharacterized protein conserved in bacteria YP_003926800.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003926805.1 COG3505 Type IV secretory pathway, VirD4 components YP_003926806.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_003926809.1 COG3504 Type IV secretory pathway, VirB9 components YP_003926811.1 COG3736 Type IV secretory pathway, component VirB8 YP_003926823.1 COG0249 Mismatch repair ATPase (MutS family) YP_003926827.1 COG3451 Type IV secretory pathway, VirB4 components YP_003926832.1 COG0796 Glutamate racemase YP_003926833.1 COG1158 Transcription termination factor YP_003926834.1 COG0254 Ribosomal protein L31 YP_003926835.1 COG0313 Predicted methyltransferases YP_003926836.1 COG0566 rRNA methylases YP_003926838.1 COG1217 Predicted membrane GTPase involved in stress response YP_003926840.1 COG0825 Acetyl-CoA carboxylase alpha subunit YP_003926841.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_003926843.1 COG0236 Acyl carrier protein YP_003926844.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_003926845.1 COG0828 Ribosomal protein S21 YP_003926848.1 COG3059 Predicted membrane protein YP_003926849.1 COG0253 Diaminopimelate epimerase YP_003926850.1 COG0628 Predicted permease YP_003926852.1 COG0012 Predicted GTPase, probable translation factor YP_003926853.1 COG0260 Leucyl aminopeptidase YP_003926854.1 COG0586 Uncharacterized membrane-associated protein YP_003926855.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins YP_003926857.1 COG0698 Ribose 5-phosphate isomerase RpiB YP_003926858.1 COG1994 Zn-dependent proteases YP_003926859.1 COG0681 Signal peptidase I YP_003926860.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase YP_003926861.1 COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily YP_003926863.1 COG4692 Predicted neuraminidase (sialidase) YP_003926864.1 COG0418 Dihydroorotase YP_003926865.1 COG0810 Periplasmic protein TonB, links inner and outer membranes YP_003926867.1 COG1886 Flagellar motor switch/type III secretory pathway protein YP_003926868.1 COG0177 Predicted EndoIII-related endonuclease YP_003926869.1 COG1918 Fe2+ transport system protein A YP_003926871.1 COG1559 Predicted periplasmic solute-binding protein YP_003926872.1 COG1146 Ferredoxin YP_003926873.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_003926874.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit YP_003926875.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_003926877.1 COG0863 DNA modification methylase YP_003926879.1 COG1943 Transposase and inactivated derivatives YP_003926880.1 COG0675 Transposase and inactivated derivatives YP_003926884.1 COG1495 Disulfide bond formation protein DsbB YP_003926886.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein) YP_003926887.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_003926888.1 COG0840 Methyl-accepting chemotaxis protein YP_003926889.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003926891.1 COG1344 Flagellin and related hook-associated proteins YP_003926892.1 COG2231 Uncharacterized protein related to Endonuclease III YP_003926894.1 COG0407 Uroporphyrinogen-III decarboxylase YP_003926895.1 COG1538 Outer membrane protein YP_003926896.1 COG0845 Membrane-fusion protein YP_003926897.1 COG0841 Cation/multidrug efflux pump YP_003926898.1 COG0015 Adenylosuccinate lyase YP_003926899.1 COG0119 Isopropylmalate/homocitrate/citramalate synthases YP_003926900.1 COG0842 ABC-type multidrug transport system, permease component YP_003926901.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain YP_003926902.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_003926903.1 COG0835 Chemotaxis signal transduction protein YP_003926904.1 COG0173 Aspartyl-tRNA synthetase YP_003926905.1 COG0563 Adenylate kinase and related kinases YP_003926906.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003926907.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003926908.1 COG0221 Inorganic pyrophosphatase YP_003926909.1 COG1193 Mismatch repair ATPase (MutS family) YP_003926911.1 COG0773 UDP-N-acetylmuramate-alanine ligase YP_003926912.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_003926913.1 COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis YP_003926914.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase YP_003926915.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003926916.1 COG1479 Uncharacterized conserved protein YP_003926917.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) YP_003926919.1 COG1740 Ni,Fe-hydrogenase I small subunit YP_003926920.1 COG0374 Ni,Fe-hydrogenase I large subunit YP_003926921.1 COG1969 Ni,Fe-hydrogenase I cytochrome b subunit YP_003926922.1 COG0680 Ni,Fe-hydrogenase maturation factor YP_003926927.1 COG1896 Predicted hydrolases of HD superfamily YP_003926928.1 COG1912 Uncharacterized conserved protein YP_003926930.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis YP_003926932.1 COG0178 Excinuclease ATPase subunit YP_003926935.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_003926937.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_003926938.1 COG0818 Diacylglycerol kinase YP_003926941.1 COG4647 Acetone carboxylase, gamma subunit YP_003926942.1 COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit YP_003926943.1 COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit YP_003926944.1 COG3528 Uncharacterized protein conserved in bacteria YP_003926945.1 COG2031 Short chain fatty acids transporter YP_003926946.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit YP_003926947.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit YP_003926948.1 COG0183 Acetyl-CoA acetyltransferase YP_003926949.1 COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB YP_003926951.1 COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB YP_003926952.1 COG0370 Fe2+ transport system protein B YP_003926953.1 COG4772 Outer membrane receptor for Fe3+-dicitrate YP_003926954.1 COG1338 Flagellar biosynthesis pathway, component FliP YP_003926956.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_003926959.1 COG0209 Ribonucleotide reductase, alpha subunit YP_003926960.1 COG0673 Predicted dehydrogenases and related proteins YP_003926961.1 COG0730 Predicted permeases YP_003926962.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_003926963.1 COG0582 Integrase YP_003926968.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_003926970.1 COG4889 Predicted helicase YP_003926971.1 COG0247 Fe-S oxidoreductase YP_003926972.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_003926974.1 COG0082 Chorismate synthase YP_003926975.1 COG0571 dsRNA-specific ribonuclease YP_003926976.1 COG0328 Ribonuclease HI YP_003926977.1 COG1897 Homoserine trans-succinylase YP_003926978.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_003926979.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_003926980.1 COG0612 Predicted Zn-dependent peptidases YP_003926981.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes YP_003926982.1 COG4775 Outer membrane protein/protective antigen OMA87 YP_003926983.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes YP_003926984.1 COG1528 Ferritin-like protein YP_003926985.1 COG0560 Phosphoserine phosphatase YP_003926988.1 COG1573 Uracil-DNA glycosylase YP_003926989.1 COG1027 Aspartate ammonia-lyase YP_003926990.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase YP_003926992.1 COG1210 UDP-glucose pyrophosphorylase YP_003926993.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_003926994.1 COG0762 Predicted integral membrane protein YP_003926995.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_003926996.1 COG0778 Nitroreductase YP_003926998.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase YP_003926999.1 COG0603 Predicted PP-loop superfamily ATPase YP_003927002.1 COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog YP_003927003.1 COG1137 ABC-type (unclassified) transport system, ATPase component YP_003927004.1 COG0802 Predicted ATPase or kinase YP_003927005.1 COG2812 DNA polymerase III, gamma/tau subunits YP_003927006.1 COG1279 Lysine efflux permease YP_003927011.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D YP_003927012.1 COG2704 Anaerobic C4-dicarboxylate transporter YP_003927015.1 COG0042 tRNA-dihydrouridine synthase YP_003927016.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_003927017.1 COG0621 2-methylthioadenine synthetase YP_003927018.1 COG0218 Predicted GTPase YP_003927020.1 COG0621 2-methylthioadenine synthetase YP_003927021.1 COG2236 Predicted phosphoribosyltransferases YP_003927022.1 COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase YP_003927023.1 COG1267 Phosphatidylglycerophosphatase A and related proteins YP_003927024.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes YP_003927025.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_003927026.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase YP_003927027.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_003927028.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_003927029.1 COG0772 Bacterial cell division membrane protein YP_003927030.1 COG3596 Predicted GTPase YP_003927031.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_003927032.1 COG3979 Uncharacterized protein contain chitin-binding domain type 3 YP_003927033.1 COG0220 Predicted S-adenosylmethionine-dependent methyltransferase YP_003927034.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_003927035.1 COG2177 Cell division protein YP_003927036.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003927037.1 COG1334 Uncharacterized flagellar protein FlaG YP_003927038.1 COG1345 Flagellar capping protein YP_003927039.1 COG1516 Flagellin-specific chaperone FliS YP_003927041.1 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 YP_003927043.1 COG0388 Predicted amidohydrolase YP_003927044.1 COG2056 Predicted permease YP_003927045.1 COG0534 Na+-driven multidrug efflux pump YP_003927046.1 COG1418 Predicted HD superfamily hydrolase YP_003927047.1 COG0212 5-formyltetrahydrofolate cyclo-ligase YP_003927049.1 COG0552 Signal recognition particle GTPase YP_003927050.1 COG0727 Predicted Fe-S-cluster oxidoreductase YP_003927053.1 COG2896 Molybdenum cofactor biosynthesis enzyme YP_003927054.1 COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A YP_003927055.1 COG1377 Flagellar biosynthesis pathway, component FlhB YP_003927057.1 COG0860 N-acetylmuramoyl-L-alanine amidase YP_003927058.1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase YP_003927059.1 COG0162 Tyrosyl-tRNA synthetase YP_003927060.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_003927061.1 COG1758 DNA-directed RNA polymerase, subunit K/omega YP_003927062.1 COG0528 Uridylate kinase YP_003927063.1 COG1427 Predicted periplasmic solute-binding protein YP_003927064.1 COG1049 Aconitase B YP_003927069.1 COG2834 Outer membrane lipoprotein-sorting protein YP_003927070.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_003927071.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component YP_003927073.1 COG0732 Restriction endonuclease S subunits YP_003927074.1 COG2217 Cation transport ATPase YP_003927075.1 COG0606 Predicted ATPase with chaperone activity YP_003927076.1 COG0242 N-formylmethionyl-tRNA deformylase YP_003927077.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_003927078.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_003927081.1 COG0315 Molybdenum cofactor biosynthesis enzyme YP_003927082.1 COG0521 Molybdopterin biosynthesis enzymes YP_003927083.1 COG0314 Molybdopterin converting factor, large subunit YP_003927084.1 COG1977 Molybdopterin converting factor, small subunit YP_003927085.1 COG0807 GTP cyclohydrolase II YP_003927087.1 COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003927088.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003927089.1 COG1451 Predicted metal-dependent hydrolase YP_003927091.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) YP_003927092.1 COG1580 Flagellar basal body-associated protein YP_003927093.1 COG0742 N6-adenine-specific methylase YP_003927095.1 COG1565 Uncharacterized conserved protein YP_003927096.1 COG0491 Zn-dependent hydrolases, including glyoxylases YP_003927097.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 YP_003927098.1 COG1291 Flagellar motor component YP_003927099.1 COG1360 Flagellar motor protein YP_003927101.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003927102.1 COG2189 Adenine specific DNA methylase Mod YP_003927103.1 COG2189 Adenine specific DNA methylase Mod YP_003927104.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component YP_003927105.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components YP_003927106.1 COG0018 Arginyl-tRNA synthetase YP_003927107.1 COG0322 Nuclease subunit of the excinuclease complex YP_003927108.1 COG0460 Homoserine dehydrogenase YP_003927109.1 COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase YP_003927110.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_003927111.1 COG0492 Thioredoxin reductase YP_003927112.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003927113.1 COG0724 RNA-binding proteins (RRM domain) YP_003927115.1 COG0356 F0F1-type ATP synthase, subunit a YP_003927116.1 COG0516 IMP dehydrogenase/GMP reductase YP_003927117.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_003927118.1 COG0237 Dephospho-CoA kinase YP_003927119.1 COG0421 Spermidine synthase YP_003927121.1 COG1160 Predicted GTPases YP_003927122.1 COG0776 Bacterial nucleoid DNA-binding protein YP_003927124.1 COG3018 Uncharacterized protein conserved in bacteria YP_003927126.1 COG2067 Long-chain fatty acid transport protein YP_003927127.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases YP_003927128.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase YP_003927130.1 COG0352 Thiamine monophosphate synthase YP_003927131.1 COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase YP_003927132.1 COG2145 Hydroxyethylthiazole kinase, sugar kinase family YP_003927133.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003927134.1 COG0732 Restriction endonuclease S subunits YP_003927135.1 COG0671 Membrane-associated phospholipid phosphatase YP_003927136.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_003927137.1 COG0516 IMP dehydrogenase/GMP reductase YP_003927138.1 COG0279 Phosphoheptose isomerase YP_003927139.1 COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase YP_003927140.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_003927141.1 COG0241 Histidinol phosphatase and related phosphatases YP_003927142.1 COG2836 Uncharacterized conserved protein YP_003927143.1 COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor YP_003927146.1 COG0756 dUTPase YP_003927147.1 COG0782 Transcription elongation factor YP_003927148.1 COG0763 Lipid A disaccharide synthetase YP_003927150.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) YP_003927151.1 COG1749 Flagellar hook protein FlgE YP_003927152.1 COG2134 CDP-diacylglycerol pyrophosphatase YP_003927153.1 COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism YP_003927156.1 COG0753 Catalase YP_003927157.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_003927158.1 COG0817 Holliday junction resolvasome, endonuclease subunit YP_003927159.1 COG1432 Uncharacterized conserved protein YP_003927162.1 COG0632 Holliday junction resolvasome, DNA-binding subunit YP_003927164.1 COG0728 Uncharacterized membrane protein, putative virulence factor YP_003927165.1 COG0215 Cysteinyl-tRNA synthetase YP_003927167.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components YP_003927168.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component YP_003927169.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_003927170.1 COG1607 Acyl-CoA hydrolase YP_003927171.1 COG3041 Uncharacterized protein conserved in bacteria YP_003927176.1 COG0409 Hydrogenase maturation factor YP_003927177.1 COG0409 Hydrogenase maturation factor YP_003927178.1 COG0298 Hydrogenase maturation factor YP_003927179.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase YP_003927181.1 COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain YP_003927182.1 COG0282 Acetate kinase YP_003927183.1 COG0282 Acetate kinase YP_003927184.1 COG0280 Phosphotransacetylase YP_003927185.1 COG0280 Phosphotransacetylase YP_003927187.1 COG1843 Flagellar hook capping protein YP_003927188.1 COG1749 Flagellar hook protein FlgE YP_003927190.1 COG0827 Adenine-specific DNA methylase YP_003927191.1 COG0210 Superfamily I DNA and RNA helicases YP_003927195.1 COG1190 Lysyl-tRNA synthetase (class II) YP_003927196.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_003927198.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) YP_003927199.1 COG0670 Integral membrane protein, interacts with FtsH YP_003927200.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_003927203.1 COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog YP_003927204.1 COG0353 Recombinational DNA repair protein (RecF pathway) YP_003927205.1 COG0585 Uncharacterized conserved protein YP_003927206.1 COG0501 Zn-dependent protease with chaperone function YP_003927207.1 COG0302 GTP cyclohydrolase I YP_003927208.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_003927209.1 COG0496 Predicted acid phosphatase YP_003927211.1 COG0720 6-pyruvoyl-tetrahydropterin synthase YP_003927212.1 COG0602 Organic radical activating enzymes YP_003927213.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_003927215.1 COG0477 Permeases of the major facilitator superfamily YP_003927216.1 COG1479 Uncharacterized conserved protein YP_003927217.1 COG0765 ABC-type amino acid transport system, permease component YP_003927218.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_003927219.1 COG0787 Alanine racemase YP_003927220.1 COG1115 Na+/alanine symporter YP_003927221.1 COG0665 Glycine/D-amino acid oxidases (deaminating) YP_003927222.1 COG0251 Putative translation initiation inhibitor, yjgF family YP_003927224.1 COG1757 Na+/H+ antiporter YP_003927228.1 COG1576 Uncharacterized conserved protein YP_003927229.1 COG0777 Acetyl-CoA carboxylase beta subunit YP_003927230.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_003927231.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced) YP_003927233.1 COG0778 Nitroreductase YP_003927234.1 COG0682 Prolipoprotein diacylglyceryltransferase YP_003927235.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_003927236.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase YP_003927237.1 COG1579 Zn-ribbon protein, possibly nucleic acid-binding YP_003927238.1 COG0327 Uncharacterized conserved protein YP_003927239.1 COG0752 Glycyl-tRNA synthetase, alpha subunit YP_003927240.1 COG0240 Glycerol-3-phosphate dehydrogenase YP_003927241.1 COG0699 Predicted GTPases (dynamin-related) YP_003927243.1 COG0699 Predicted GTPases (dynamin-related) YP_003927244.1 COG3309 Uncharacterized virulence-associated protein D YP_003927246.1 COG3696 Putative silver efflux pump YP_003927247.1 COG0845 Membrane-fusion protein YP_003927249.1 COG0751 Glycyl-tRNA synthetase, beta subunit YP_003927251.1 COG0696 Phosphoglyceromutase YP_003927252.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_003927253.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_003927254.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_003927255.1 COG0849 Actin-like ATPase involved in cell division YP_003927256.1 COG0206 Cell division GTPase YP_003927257.1 COG0675 Transposase and inactivated derivatives YP_003927259.1 COG0668 Small-conductance mechanosensitive channel YP_003927262.1 COG1479 Uncharacterized conserved protein YP_003927263.1 COG0608 Single-stranded DNA-specific exonuclease YP_003927265.1 COG1166 Arginine decarboxylase (spermidine biosynthesis) YP_003927266.1 COG0438 Glycosyltransferase YP_003927267.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism YP_003927268.1 COG0500 SAM-dependent methyltransferases YP_003927270.1 COG0143 Methionyl-tRNA synthetase YP_003927271.1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases YP_003927272.1 COG0668 Small-conductance mechanosensitive channel YP_003927275.1 COG0518 GMP synthase - Glutamine amidotransferase domain YP_003927277.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing YP_003927279.1 COG0520 Selenocysteine lyase YP_003927280.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_003927281.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit YP_003927282.1 COG0073 EMAP domain YP_003927283.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase YP_003927284.1 COG0761 Penicillin tolerance protein YP_003927285.1 COG0539 Ribosomal protein S1 YP_003927287.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases YP_003927288.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_003927289.1 COG0325 Predicted enzyme with a TIM-barrel fold YP_003927290.1 COG2908 Uncharacterized protein conserved in bacteria YP_003927291.1 COG0835 Chemotaxis signal transduction protein YP_003927292.1 COG0643 Chemotaxis protein histidine kinase and related kinases YP_003927293.1 COG0835 Chemotaxis signal transduction protein YP_003927294.1 COG2077 Peroxiredoxin YP_003927295.1 COG2077 Peroxiredoxin YP_003927296.1 COG0605 Superoxide dismutase YP_003927297.1 COG0500 SAM-dependent methyltransferases YP_003927298.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase YP_003927300.1 COG0055 F0F1-type ATP synthase, beta subunit YP_003927304.1 COG0501 Zn-dependent protease with chaperone function YP_003927305.1 COG2890 Methylase of polypeptide chain release factors YP_003927306.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase YP_003927308.1 COG1333 ResB protein required for cytochrome c biosynthesis YP_003927309.1 COG2143 Thioredoxin-related protein YP_003927310.1 COG0276 Protoheme ferro-lyase (ferrochelatase) YP_003927312.1 COG1385 Uncharacterized protein conserved in bacteria YP_003927314.1 COG0717 Deoxycytidine deaminase YP_003927315.1 COG0511 Biotin carboxyl carrier protein YP_003927316.1 COG0439 Biotin carboxylase YP_003927320.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis YP_003927321.1 COG0208 Ribonucleotide reductase, beta subunit YP_003927322.1 COG2518 Protein-L-isoaspartate carboxylmethyltransferase YP_003927323.1 COG0795 Predicted permeases YP_003927324.1 COG0101 Pseudouridylate synthase YP_003927325.1 COG1087 UDP-glucose 4-epimerase YP_003927327.1 COG4221 Short-chain alcohol dehydrogenase of unknown specificity YP_003927328.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003927329.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase YP_003927330.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase YP_003927331.1 COG0364 Glucose-6-phosphate 1-dehydrogenase YP_003927332.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase YP_003927333.1 COG0837 Glucokinase YP_003927334.1 COG1064 Zn-dependent alcohol dehydrogenases YP_003927335.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003927339.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_003927340.1 COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit YP_003927341.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_003927342.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit YP_003927343.1 COG0015 Adenylosuccinate lyase YP_003927345.1 COG0556 Helicase subunit of the DNA excision repair complex YP_003927348.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003927349.1 COG0405 Gamma-glutamyltransferase YP_003927350.1 COG1256 Flagellar hook-associated protein YP_003927352.1 COG0270 Site-specific DNA methylase YP_003927355.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 YP_003927357.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_003927358.1 COG0823 Periplasmic component of the Tol biopolymer transport system YP_003927360.1 COG0848 Biopolymer transport protein YP_003927361.1 COG0811 Biopolymer transport proteins YP_003927362.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_003927363.1 COG0055 F0F1-type ATP synthase, beta subunit YP_003927364.1 COG0224 F0F1-type ATP synthase, gamma subunit YP_003927365.1 COG0056 F0F1-type ATP synthase, alpha subunit YP_003927368.1 COG0711 F0F1-type ATP synthase, subunit b YP_003927369.1 COG1475 Predicted transcriptional regulators YP_003927370.1 COG1192 ATPases involved in chromosome partitioning YP_003927371.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase YP_003927372.1 COG0223 Methionyl-tRNA formyltransferase YP_003927373.1 COG4694 Uncharacterized protein conserved in bacteria YP_003927374.1 COG4487 Uncharacterized protein conserved in bacteria YP_003927377.1 COG0335 Ribosomal protein L19 YP_003927378.1 COG0336 tRNA-(guanine-N1)-methyltransferase YP_003927379.1 COG0806 RimM protein, required for 16S rRNA processing YP_003927380.1 COG1837 Predicted RNA-binding protein (contains KH domain) YP_003927381.1 COG0228 Ribosomal protein S16 YP_003927382.1 COG0541 Signal recognition particle GTPase YP_003927383.1 COG0525 Valyl-tRNA synthetase YP_003927384.1 COG1699 Uncharacterized protein conserved in bacteria YP_003927385.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase YP_003927388.1 COG0345 Pyrroline-5-carboxylate reductase YP_003927389.1 COG2184 Protein involved in cell division YP_003927390.1 COG0319 Predicted metal-dependent hydrolase YP_003927391.1 COG0716 Flavodoxins YP_003927392.1 COG0586 Uncharacterized membrane-associated protein YP_003927393.1 COG3197 Uncharacterized protein, possibly involved in nitrogen fixation YP_003927394.1 COG0492 Thioredoxin reductase YP_003927395.1 COG0477 Permeases of the major facilitator superfamily YP_003927396.1 COG0166 Glucose-6-phosphate isomerase YP_003927399.1 COG1966 Carbon starvation protein, predicted membrane protein YP_003927400.1 COG0765 ABC-type amino acid transport system, permease component YP_003927401.1 COG0765 ABC-type amino acid transport system, permease component YP_003927402.1 COG1126 ABC-type polar amino acid transport system, ATPase component YP_003927403.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_003927405.1 COG0738 Fucose permease YP_003927406.1 COG2252 Permeases YP_003927411.1 COG0813 Purine-nucleoside phosphorylase YP_003927412.1 COG1015 Phosphopentomutase YP_003927413.1 COG1972 Nucleoside permease YP_003927414.1 COG0477 Permeases of the major facilitator superfamily YP_003927415.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_003927416.1 COG0475 Kef-type K+ transport systems, membrane components YP_003927417.1 COG0534 Na+-driven multidrug efflux pump YP_003927418.1 COG2814 Arabinose efflux permease YP_003927420.1 COG3338 Carbonic anhydrase YP_003927422.1 COG0136 Aspartate-semialdehyde dehydrogenase YP_003927423.1 COG0124 Histidyl-tRNA synthetase YP_003927424.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003927426.1 COG0480 Translation elongation factors (GTPases) YP_003927427.1 COG0049 Ribosomal protein S7 YP_003927428.1 COG0048 Ribosomal protein S12 YP_003927429.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_003927431.1 COG0222 Ribosomal protein L7/L12 YP_003927432.1 COG0244 Ribosomal protein L10 YP_003927433.1 COG0081 Ribosomal protein L1 YP_003927434.1 COG0080 Ribosomal protein L11 YP_003927435.1 COG0250 Transcription antiterminator YP_003927436.1 COG0690 Preprotein translocase subunit SecE YP_003927437.1 COG0267 Ribosomal protein L33 YP_003927438.1 COG0050 GTPases - translation elongation factors YP_003927439.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003927440.1 COG0546 Predicted phosphatases YP_003927441.1 COG3392 Adenine-specific DNA methylase YP_003927442.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_003927444.1 COG1045 Serine acetyltransferase YP_003927445.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K YP_003927447.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) YP_003927448.1 COG1926 Predicted phosphoribosyltransferases YP_003927449.1 COG1452 Organic solvent tolerance protein OstA YP_003927451.1 COG0151 Phosphoribosylamine-glycine ligase YP_003927452.1 COG1131 ABC-type multidrug transport system, ATPase component YP_003927453.1 COG0020 Undecaprenyl pyrophosphate synthase YP_003927454.1 COG0277 FAD/FMN-containing dehydrogenases YP_003927455.1 COG0607 Rhodanese-related sulfurtransferase YP_003927456.1 COG1587 Uroporphyrinogen-III synthase YP_003927457.1 COG0239 Integral membrane protein possibly involved in chromosome condensation YP_003927458.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_003927459.1 COG2863 Cytochrome c553 YP_003927460.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_003927461.1 COG0527 Aspartokinases YP_003927463.1 COG0470 ATPase involved in DNA replication YP_003927464.1 COG0294 Dihydropteroate synthase and related enzymes YP_003927466.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily YP_003927469.1 COG2952 Uncharacterized protein conserved in bacteria YP_003927470.1 COG0505 Carbamoylphosphate synthase small subunit YP_003927471.1 COG0388 Predicted amidohydrolase YP_003927475.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation YP_003927476.1 COG0013 Alanyl-tRNA synthetase YP_003927477.1 COG2841 Uncharacterized protein conserved in bacteria YP_003927481.1 COG0238 Ribosomal protein S18 YP_003927482.1 COG0629 Single-stranded DNA-binding protein YP_003927483.1 COG0360 Ribosomal protein S6 YP_003927486.1 COG0557 Exoribonuclease R YP_003927487.1 COG0169 Shikimate 5-dehydrogenase YP_003927489.1 COG4174 ABC-type uncharacterized transport system, permease component YP_003927490.1 COG0180 Tryptophanyl-tRNA synthetase YP_003927491.1 COG0500 SAM-dependent methyltransferases YP_003927492.1 COG1314 Preprotein translocase subunit SecG YP_003927493.1 COG0233 Ribosome recycling factor YP_003927494.1 COG0461 Orotate phosphoribosyltransferase YP_003927495.1 COG1714 Predicted membrane protein/domain YP_003927496.1 COG0846 NAD-dependent protein deacetylases, SIR2 family YP_003927497.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) YP_003927498.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases YP_003927499.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit YP_003927500.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_003927503.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_003927504.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) YP_003927505.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_003927506.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) YP_003927507.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) YP_003927508.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_003927509.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) YP_003927510.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) YP_003927511.1 COG1729 Uncharacterized protein conserved in bacteria YP_003927512.1 COG1109 Phosphomannomutase YP_003927514.1 COG0159 Tryptophan synthase alpha chain YP_003927515.1 COG0133 Tryptophan synthase beta chain YP_003927516.1 COG0134 Indole-3-glycerol phosphate synthase YP_003927517.1 COG0547 Anthranilate phosphoribosyltransferase YP_003927518.1 COG0512 Anthranilate/para-aminobenzoate synthases component II YP_003927519.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_003927520.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003927521.1 COG2503 Predicted secreted acid phosphatase YP_003927522.1 COG2353 Uncharacterized conserved protein YP_003927524.1 COG0819 Putative transcription activator YP_003927525.1 COG3201 Nicotinamide mononucleotide transporter YP_003927526.1 COG1564 Thiamine pyrophosphokinase YP_003927529.1 COG0203 Ribosomal protein L17 YP_003927530.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_003927531.1 COG0522 Ribosomal protein S4 and related proteins YP_003927532.1 COG0100 Ribosomal protein S11 YP_003927533.1 COG0099 Ribosomal protein S13 YP_003927534.1 COG0257 Ribosomal protein L36 YP_003927535.1 COG0361 Translation initiation factor 1 (IF-1) YP_003927536.1 COG0024 Methionine aminopeptidase YP_003927537.1 COG0201 Preprotein translocase subunit SecY YP_003927538.1 COG0200 Ribosomal protein L15 YP_003927539.2 COG0098 Ribosomal protein S5 YP_003927540.1 COG0256 Ribosomal protein L18 YP_003927541.1 COG0097 Ribosomal protein L6P/L9E YP_003927542.1 COG0096 Ribosomal protein S8 YP_003927543.1 COG0199 Ribosomal protein S14 YP_003927544.1 COG0094 Ribosomal protein L5 YP_003927545.1 COG0198 Ribosomal protein L24 YP_003927546.1 COG0093 Ribosomal protein L14 YP_003927547.1 COG0186 Ribosomal protein S17 YP_003927548.1 COG0255 Ribosomal protein L29 YP_003927549.1 COG0197 Ribosomal protein L16/L10E YP_003927550.1 COG0092 Ribosomal protein S3 YP_003927551.1 COG0091 Ribosomal protein L22 YP_003927552.1 COG0185 Ribosomal protein S19 YP_003927553.1 COG0090 Ribosomal protein L2 YP_003927554.1 COG0089 Ribosomal protein L23 YP_003927555.1 COG0088 Ribosomal protein L4 YP_003927556.1 COG0087 Ribosomal protein L3 YP_003927557.1 COG0051 Ribosomal protein S10 YP_003927558.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003927560.1 COG0164 Ribonuclease HII YP_003927562.1 COG0114 Fumarase YP_003927565.1 COG0845 Membrane-fusion protein YP_003927566.1 COG3696 Putative silver efflux pump YP_003927567.1 COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) YP_003927568.1 COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) YP_003927569.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_003927571.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_003927572.1 COG2214 DnaJ-class molecular chaperone YP_003927573.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase YP_003927574.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain YP_003927575.1 COG0811 Biopolymer transport proteins YP_003927576.1 COG0848 Biopolymer transport protein YP_003927577.1 COG0810 Periplasmic protein TonB, links inner and outer membranes YP_003927580.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance YP_003927581.1 COG0598 Mg2+ and Co2+ transporters YP_003927582.1 COG0126 3-phosphoglycerate kinase YP_003927583.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_003927584.1 COG0692 Uracil DNA glycosylase YP_003927585.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_003927587.1 COG0793 Periplasmic protease YP_003927589.1 COG0863 DNA modification methylase YP_003927590.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_003927591.1 COG0157 Nicotinate-nucleotide pyrophosphorylase YP_003927592.1 COG0379 Quinolinate synthase YP_003927593.1 COG0688 Phosphatidylserine decarboxylase YP_003927596.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases YP_003927597.1 COG0658 Predicted membrane metal-binding protein YP_003927598.1 COG0305 Replicative DNA helicase YP_003927599.1 COG0062 Uncharacterized conserved protein YP_003927600.1 COG0642 Signal transduction histidine kinase YP_003927601.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003927602.1 COG0863 DNA modification methylase YP_003927603.1 COG0863 DNA modification methylase YP_003927604.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003927607.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003927608.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003927609.1 COG0787 Alanine racemase YP_003927611.1 COG1792 Cell shape-determining protein YP_003927612.1 COG1077 Actin-like ATPase involved in cell morphogenesis YP_003927613.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_003927614.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_003927615.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_003927616.1 COG1699 Uncharacterized protein conserved in bacteria YP_003927618.1 COG4105 DNA uptake lipoprotein YP_003927619.1 COG0466 ATP-dependent Lon protease, bacterial type YP_003927620.1 COG0287 Prephenate dehydrogenase YP_003927621.1 COG1864 DNA/RNA endonuclease G, NUC1 YP_003927622.1 COG2189 Adenine specific DNA methylase Mod YP_003927623.1 COG3421 Uncharacterized protein conserved in bacteria YP_003927624.1 COG0502 Biotin synthase and related enzymes YP_003927625.1 COG1295 Predicted membrane protein YP_003927629.1 COG1479 Uncharacterized conserved protein YP_003927631.1 COG0780 Enzyme related to GTP cyclohydrolase I YP_003927632.1 COG0799 Uncharacterized homolog of plant Iojap protein YP_003927633.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003927634.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003927636.1 COG0270 Site-specific DNA methylase YP_003927638.1 COG0812 UDP-N-acetylmuramate dehydrogenase YP_003927639.1 COG1987 Flagellar biosynthesis pathway, component FliQ YP_003927640.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase YP_003927641.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_003927642.1 COG0060 Isoleucyl-tRNA synthetase YP_003927643.1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) YP_003927648.1 COG0820 Predicted Fe-S-cluster redox enzyme YP_003927649.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation YP_003927650.1 COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain YP_003927651.1 COG0030 Dimethyladenosine transferase (rRNA methylation) YP_003927654.1 COG0732 Restriction endonuclease S subunits YP_003927655.1 COG0788 Formyltetrahydrofolate hydrolase YP_003927656.1 COG0616 Periplasmic serine proteases (ClpP class) YP_003927663.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family YP_003927664.1 COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) YP_003927665.1 COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase YP_003927666.1 COG0691 tmRNA-binding protein YP_003927667.1 COG0811 Biopolymer transport proteins YP_003927669.1 COG0848 Biopolymer transport protein YP_003927670.1 COG0230 Ribosomal protein L34 YP_003927671.1 COG0594 RNase P protein component YP_003927672.1 COG0759 Uncharacterized conserved protein YP_003927673.1 COG0706 Preprotein translocase subunit YidC YP_003927674.1 COG1315 Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain YP_003927675.1 COG0486 Predicted GTPase YP_003927680.1 COG0481 Membrane GTPase LepA YP_003927683.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_003927684.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases YP_003927685.1 COG0587 DNA polymerase III, alpha subunit YP_003927686.1 COG1858 Cytochrome c peroxidase YP_003927688.1 COG3187 Heat shock protein YP_003927690.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_003927691.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_003927692.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component YP_003927695.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase YP_003927697.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_003927698.1 COG1396 Predicted transcriptional regulators YP_003927699.1 COG3392 Adenine-specific DNA methylase YP_003927700.1 COG2189 Adenine specific DNA methylase Mod YP_003927703.1 COG0125 Thymidylate kinase YP_003927704.1 COG0669 Phosphopantetheine adenylyltransferase YP_003927705.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_003927707.1 COG1261 Flagellar basal body P-ring biosynthesis protein YP_003927708.1 COG0210 Superfamily I DNA and RNA helicases YP_003927709.1 COG0457 FOG: TPR repeat YP_003927710.1 COG0172 Seryl-tRNA synthetase YP_003927711.1 COG0388 Predicted amidohydrolase YP_003927712.1 COG1722 Exonuclease VII small subunit YP_003927713.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis YP_003927714.1 COG1981 Predicted membrane protein YP_003927715.1 COG1739 Uncharacterized conserved protein YP_003927716.1 COG0842 ABC-type multidrug transport system, permease component YP_003927717.1 COG0842 ABC-type multidrug transport system, permease component YP_003927718.1 COG0845 Membrane-fusion protein YP_003927719.1 COG1538 Outer membrane protein YP_003927720.1 COG1253 Hemolysins and related proteins containing CBS domains YP_003927721.1 COG0306 Phosphate/sulphate permeases YP_003927722.1 COG0694 Thioredoxin-like proteins and domains YP_003927724.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase YP_003927725.1 COG0176 Transaldolase YP_003927726.1 COG1825 Ribosomal protein L25 (general stress protein Ctc) YP_003927727.1 COG0193 Peptidyl-tRNA hydrolase YP_003927728.1 COG0795 Predicted permeases YP_003927729.1 COG3886 Predicted HKD family nuclease YP_003927732.1 COG3399 Uncharacterized protein conserved in bacteria YP_003927733.1 COG2217 Cation transport ATPase YP_003927734.1 COG4123 Predicted O-methyltransferase YP_003927735.1 COG0117 Pyrimidine deaminase YP_003927736.1 COG0786 Na+/glutamate symporter YP_003927737.1 COG1748 Saccharopine dehydrogenase and related proteins YP_003927738.1 COG0348 Polyferredoxin YP_003927739.1 COG0344 Predicted membrane protein YP_003927740.1 COG1539 Dihydroneopterin aldolase YP_003927742.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_003927743.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] YP_003927744.1 COG0195 Transcription elongation factor YP_003927745.1 COG1002 Type II restriction enzyme, methylase subunits YP_003927746.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_003927747.1 COG3587 Restriction endonuclease YP_003927748.1 COG2189 Adenine specific DNA methylase Mod YP_003927749.1 COG2189 Adenine specific DNA methylase Mod YP_003927750.1 COG1200 RecG-like helicase YP_003927753.1 COG0708 Exonuclease III YP_003927755.1 COG0593 ATPase involved in DNA replication initiation YP_003927756.1 COG0813 Purine-nucleoside phosphorylase YP_003927758.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains YP_003927759.1 COG1351 Predicted alternative thymidylate synthase YP_003927761.1 COG0732 Restriction endonuclease S subunits YP_003927763.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_003927764.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003927765.1 COG1451 Predicted metal-dependent hydrolase YP_003927766.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_003927767.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family YP_003927768.1 COG0833 Amino acid transporters YP_003927769.1 COG0686 Alanine dehydrogenase YP_003927771.1 COG0061 Predicted sugar kinase YP_003927772.1 COG0497 ATPase involved in DNA repair YP_003927773.1 COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP YP_003927777.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_003927778.1 COG0036 Pentose-5-phosphate-3-epimerase YP_003927779.1 COG0158 Fructose-1,6-bisphosphatase YP_003927781.1 COG0827 Adenine-specific DNA methylase YP_003927785.1 COG0582 Integrase YP_003927786.1 COG3177 Uncharacterized conserved protein YP_003927789.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_003927793.1 COG3451 Type IV secretory pathway, VirB4 components YP_003927794.1 COG0550 Topoisomerase IA YP_003927795.1 COG3736 Type IV secretory pathway, component VirB8 YP_003927796.1 COG3504 Type IV secretory pathway, VirB9 components YP_003927797.1 COG2948 Type IV secretory pathway, VirB10 components YP_003927801.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_003927805.1 COG3505 Type IV secretory pathway, VirD4 components YP_003927806.1 COG3041 Uncharacterized protein conserved in bacteria YP_003927808.1 COG3843 Type IV secretory pathway, VirD2 components (relaxase) YP_003927811.1 COG1192 ATPases involved in chromosome partitioning YP_003927819.1 COG0264 Translation elongation factor Ts YP_003927820.1 COG0052 Ribosomal protein S2 YP_003927821.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) YP_003927822.1 COG3004 Na+/H+ antiporter YP_003927823.1 COG1862 Preprotein translocase subunit YajC YP_003927824.1 COG0342 Preprotein translocase subunit SecD YP_003927825.1 COG0341 Preprotein translocase subunit SecF YP_003927827.1 COG0495 Leucyl-tRNA synthetase YP_003927829.1 COG0285 Folylpolyglutamate synthase YP_003927830.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003927831.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003927832.1 COG1664 Integral membrane protein CcmA involved in cell shape determination YP_003927833.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_003927834.1 COG0723 Rieske Fe-S protein YP_003927835.1 COG1290 Cytochrome b subunit of the bc complex YP_003927836.1 COG2857 Cytochrome c1 YP_003927838.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_003927839.1 COG1677 Flagellar hook-basal body protein YP_003927840.1 COG1558 Flagellar basal body rod protein YP_003927841.1 COG1815 Flagellar basal body protein YP_003927842.1 COG0772 Bacterial cell division membrane protein YP_003927843.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component YP_003927844.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component YP_003927845.1 COG0450 Peroxiredoxin YP_003927846.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen YP_003927847.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_003927849.1 COG0218 Predicted GTPase YP_003927850.1 COG1934 Uncharacterized protein conserved in bacteria YP_003927852.1 COG1778 Low specificity phosphatase (HAD superfamily) YP_003927853.1 COG0797 Lipoproteins YP_003927854.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_003927855.1 COG0084 Mg-dependent DNase YP_003927856.1 COG0307 Riboflavin synthase alpha chain YP_003927857.1 COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB YP_003927858.1 COG1135 ABC-type metal ion transport system, ATPase component YP_003927859.1 COG2011 ABC-type metal ion transport system, permease component YP_003927860.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003927862.1 COG0671 Membrane-associated phospholipid phosphatase YP_003927863.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_003927864.1 COG0854 Pyridoxal phosphate biosynthesis protein YP_003927865.1 COG1995 Pyridoxal phosphate biosynthesis protein YP_003927866.1 COG0533 Metal-dependent proteases with possible chaperone activity YP_003927868.1 COG4786 Flagellar basal body rod protein YP_003927870.1 COG4735 Uncharacterized protein conserved in bacteria YP_003927872.1 COG3177 Uncharacterized conserved protein YP_003927877.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003927878.1 COG4403 Lantibiotic modifying enzyme