-- dump date 20140619_113909 -- class Genbank::CDS -- table cds_note -- id note YP_005789232.1 COG0781 Transcription termination factor YP_005789233.1 COG0054 Riboflavin synthase beta-chain YP_005789234.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase YP_005789235.1 COG0288 Carbonic anhydrase YP_005789236.1 COG0284 Orotidine-5'-phosphate decarboxylase YP_005789237.1 COG0414 Panthothenate synthetase YP_005789240.1 COG0459 Chaperonin GroEL (HSP60 family) YP_005789241.1 COG0234 Co-chaperonin GroES (HSP10) YP_005789242.1 COG0358 DNA primase (bacterial type) YP_005789243.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_005789248.1 COG3451 Type IV secretory pathway, VirB4 components YP_005789249.1 COG3014 Uncharacterized protein conserved in bacteria YP_005789250.1 COG0835 Chemotaxis signal transduction protein YP_005789251.1 COG0019 Diaminopimelate decarboxylase YP_005789252.1 COG0671 Membrane-associated phospholipid phosphatase YP_005789253.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase YP_005789256.1 COG0372 Citrate synthase YP_005789257.1 COG0538 Isocitrate dehydrogenases YP_005789259.1 COG0132 Dethiobiotin synthetase YP_005789261.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins YP_005789262.1 COG2127 Uncharacterized conserved protein YP_005789263.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_005789264.1 COG0853 Aspartate 1-decarboxylase YP_005789265.1 COG0718 Uncharacterized protein conserved in bacteria YP_005789266.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_005789269.1 COG3736 Type IV secretory pathway, component VirB8 YP_005789270.1 COG3504 Type IV secretory pathway, VirB9 components YP_005789271.1 COG2948 Type IV secretory pathway, VirB10 components YP_005789272.1 COG0836 Mannose-1-phosphate guanylyltransferase YP_005789273.1 COG1089 GDP-D-mannose dehydratase YP_005789274.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_005789276.1 COG0309 Hydrogenase maturation factor YP_005789277.1 COG0068 Hydrogenase maturation factor YP_005789278.1 COG2957 Peptidylarginine deiminase and related enzymes YP_005789279.1 COG0863 DNA modification methylase YP_005789280.1 COG0270 Site-specific DNA methylase YP_005789282.1 COG2189 Adenine specific DNA methylase Mod YP_005789286.1 COG0591 Na+/proline symporter YP_005789287.1 COG0506 Proline dehydrogenase YP_005789294.1 COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family YP_005789298.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_005789299.1 COG0829 Urease accessory protein UreH YP_005789300.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase YP_005789301.1 COG0830 Urease accessory protein UreF YP_005789302.1 COG2371 Urease accessory protein UreE YP_005789303.1 COG1138 Cytochrome c biogenesis factor YP_005789304.1 COG0804 Urea amidohydrolase (urease) alpha subunit YP_005789305.1 COG0831 Urea amidohydrolase (urease) gamma subunit YP_005789306.1 COG0597 Lipoprotein signal peptidase YP_005789307.1 COG1109 Phosphomannomutase YP_005789308.1 COG0268 Ribosomal protein S20 YP_005789309.1 COG0216 Protein chain release factor A YP_005789314.1 COG0840 Methyl-accepting chemotaxis protein YP_005789315.1 COG0103 Ribosomal protein S9 YP_005789316.1 COG0102 Ribosomal protein L13 YP_005789318.1 COG0579 Predicted dehydrogenase YP_005789319.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) YP_005789320.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005789321.1 COG0775 Nucleoside phosphorylase YP_005789322.1 COG0331 (acyl-carrier-protein) S-malonyltransferase YP_005789323.1 HsdR; COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases YP_005789324.1 HsdR; COG0863 DNA modification methylase YP_005789326.1 COG1052 Lactate dehydrogenase and related dehydrogenases YP_005789328.1 COG0498 Threonine synthase YP_005789329.1 COG0840 Methyl-accepting chemotaxis protein YP_005789330.1 COG1636 Uncharacterized protein conserved in bacteria YP_005789332.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005789333.1 COG0840 Methyl-accepting chemotaxis protein YP_005789334.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases YP_005789335.1 COG1854 LuxS protein involved in autoinducer AI2 synthesis YP_005789336.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases YP_005789337.1 COG0031 Cysteine synthase YP_005789339.1 COG0443 Molecular chaperone YP_005789340.1 COG0576 Molecular chaperone GrpE (heat shock protein) YP_005789341.1 COG1420 Transcriptional regulator of heat shock gene YP_005789342.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases YP_005789344.1 COG2604 Uncharacterized protein conserved in bacteria YP_005789345.1 COG1344 Flagellin and related hook-associated proteins YP_005789346.1 COG0550 Topoisomerase IA YP_005789347.1 COG0731 Fe-S oxidoreductases YP_005789349.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_005789351.1 COG0441 Threonyl-tRNA synthetase YP_005789352.1 COG0290 Translation initiation factor 3 (IF-3) YP_005789353.1 COG0291 Ribosomal protein L35 YP_005789354.1 COG0292 Ribosomal protein L20 YP_005789358.1 COG1760 L-serine deaminase YP_005789359.1 COG0814 Amino acid permeases YP_005789361.1 COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase YP_005789364.1 COG1225 Peroxiredoxin YP_005789365.1 COG1556 Uncharacterized conserved protein YP_005789366.1 COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain YP_005789367.1 COG0247 Fe-S oxidoreductase YP_005789368.1 COG1620 L-lactate permease YP_005789369.1 COG1620 L-lactate permease YP_005789370.1 COG1194 A/G-specific DNA glycosylase YP_005789371.1 COG0471 Di- and tricarboxylate transporters YP_005789372.1 COG3278 Cbb3-type cytochrome oxidase, subunit 1 YP_005789373.1 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit YP_005789375.1 COG2010 Cytochrome c, mono- and diheme variants YP_005789378.1 COG0443 Molecular chaperone YP_005789381.1 COG2107 Predicted periplasmic solute-binding protein YP_005789382.1 COG0468 RecA/RadA recombinase YP_005789383.1 COG0148 Enolase YP_005789386.1 COG0703 Shikimate kinase YP_005789388.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005789389.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005789390.1 COG0217 Uncharacterized conserved protein YP_005789391.1 COG0113 Delta-aminolevulinic acid dehydratase YP_005789392.1 COG0642 Signal transduction histidine kinase YP_005789393.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005789395.1 COG0457 FOG: TPR repeat YP_005789396.1 COG0826 Collagenase and related proteases YP_005789397.1 COG0840 Methyl-accepting chemotaxis protein YP_005789398.1 COG1186 Protein chain release factor B YP_005789399.1 COG0303 Molybdopterin biosynthesis enzyme YP_005789400.1 COG1684 Flagellar biosynthesis pathway, component FliR YP_005789401.1 COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB YP_005789402.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005789403.1 COG0191 Fructose/tagatose bisphosphate aldolase YP_005789404.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) YP_005789406.1 COG2089 Sialic acid synthase YP_005789407.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005789408.1 COG0815 Apolipoprotein N-acyltransferase YP_005789410.1 COG1286 Uncharacterized membrane protein, required for colicin V production YP_005789411.1 COG1190 Lysyl-tRNA synthetase (class II) YP_005789412.1 COG0112 Glycine/serine hydroxymethyltransferase YP_005789416.1 COG2862 Predicted membrane protein YP_005789417.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_005789418.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit YP_005789419.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_005789420.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_005789421.1 COG0149 Triosephosphate isomerase YP_005789422.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_005789423.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_005789424.1 COG0192 S-adenosylmethionine synthetase YP_005789425.1 COG0105 Nucleoside diphosphate kinase YP_005789427.1 COG0333 Ribosomal protein L32 YP_005789428.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme YP_005789429.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_005789432.1 COG0489 ATPases involved in chromosome partitioning YP_005789433.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005789434.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005789436.1 COG0326 Molecular chaperone, HSP90 family YP_005789438.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005789440.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases YP_005789441.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division YP_005789442.1 COG0471 Di- and tricarboxylate transporters YP_005789443.1 COG0575 CDP-diglyceride synthetase YP_005789444.1 COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005789447.1 COG1881 Phospholipid-binding protein YP_005789449.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005789450.1 COG0822 NifU homolog involved in Fe-S cluster formation YP_005789452.1 COG1066 Predicted ATP-dependent serine protease YP_005789453.1 COG0225 Peptide methionine sulfoxide reductase YP_005789454.1 COG0730 Predicted permeases YP_005789458.1 COG0659 Sulfate permease and related transporters (MFS superfamily) YP_005789460.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_005789461.1 COG1651 Protein-disulfide isomerase YP_005789463.1 COG0754 Glutathionylspermidine synthase YP_005789465.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005789467.1 COG0181 Porphobilinogen deaminase YP_005789468.1 COG0442 Prolyl-tRNA synthetase YP_005789469.1 COG0373 Glutamyl-tRNA reductase YP_005789470.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_005789473.1 NapA: bacterioferritin; COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) YP_005789474.1 COG0642 Signal transduction histidine kinase YP_005789476.1 COG1706 Flagellar basal-body P-ring protein YP_005789477.1 COG0513 Superfamily II DNA and RNA helicases YP_005789478.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005789480.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase YP_005789484.1 COG0104 Adenylosuccinate synthase YP_005789486.1 COG3334 Uncharacterized conserved protein YP_005789487.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_005789488.1 COG1570 Exonuclease VII, large subunit YP_005789489.1 COG2189 Adenine specific DNA methylase Mod YP_005789492.1 COG0863 DNA modification methylase YP_005789493.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_005789494.1 COG0785 Cytochrome c biogenesis protein YP_005789495.1 COG0044 Dihydroorotase and related cyclic amidohydrolases YP_005789496.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases YP_005789498.1 COG0621 2-methylthioadenine synthetase YP_005789499.1 COG2121 Uncharacterized protein conserved in bacteria YP_005789503.1 COG0727 Predicted Fe-S-cluster oxidoreductase YP_005789504.1 COG0457 FOG: TPR repeat YP_005789505.1 COG0134 Indole-3-glycerol phosphate synthase YP_005789506.1 COG1145 Ferredoxin YP_005789507.1 COG0248 Exopolyphosphatase YP_005789508.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_005789509.1 COG1560 Lauroyl/myristoyl acyltransferase YP_005789510.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase YP_005789511.1 COG3400 Uncharacterized protein conserved in bacteria YP_005789512.1 COG0337 3-dehydroquinate synthetase YP_005789513.1 COG0668 Small-conductance mechanosensitive channel YP_005789514.1 COG0621 2-methylthioadenine synthetase YP_005789515.1 COG0465 ATP-dependent Zn proteases YP_005789519.1 COG0019 Diaminopimelate decarboxylase YP_005789520.1 COG1605 Chorismate mutase YP_005789521.1 COG4866 Uncharacterized conserved protein YP_005789522.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_005789523.1 COG0388 Predicted amidohydrolase YP_005789524.1 COG1344 Flagellin and related hook-associated proteins YP_005789525.1 COG0261 Ribosomal protein L21 YP_005789526.1 COG0211 Ribosomal protein L27 YP_005789527.1 COG0747 ABC-type dipeptide transport system, periplasmic component YP_005789528.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_005789529.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_005789530.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component YP_005789531.1 COG4608 ABC-type oligopeptide transport system, ATPase component YP_005789532.1 COG0536 Predicted GTPase YP_005789535.1 COG0001 Glutamate-1-semialdehyde aminotransferase YP_005789538.1 COG0388 Predicted amidohydrolase YP_005789539.1 COG0726 Predicted xylanase/chitin deacetylase YP_005789541.1 COG0863 DNA modification methylase YP_005789543.1 COG0523 Putative GTPases (G3E family) YP_005789544.1 COG0477 Permeases of the major facilitator superfamily YP_005789545.1 COG0748 Putative heme iron utilization protein YP_005789546.1 COG0018 Arginyl-tRNA synthetase YP_005789547.1 COG1826 Sec-independent protein secretion pathway components YP_005789548.1 COG0194 Guanylate kinase YP_005789550.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_005789552.1 COG2063 Flagellar basal body L-ring protein YP_005789553.1 COG1083 CMP-N-acetylneuraminic acid synthetase YP_005789554.1 COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase YP_005789555.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins YP_005789556.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase YP_005789557.1 COG0171 NAD synthase YP_005789558.1 COG0059 Ketol-acid reductoisomerase YP_005789559.1 COG2894 Septum formation inhibitor-activating ATPase YP_005789560.1 COG0851 Septum formation topological specificity factor YP_005789561.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_005789562.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) YP_005789563.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005789568.1 COG3326 Predicted membrane protein YP_005789571.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005789572.1 COG0608 Single-stranded DNA-specific exonuclease YP_005789573.1 COG0504 CTP synthase (UTP-ammonia lyase) YP_005789574.1 COG0671 Membrane-associated phospholipid phosphatase YP_005789575.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein YP_005789576.1 COG1536 Flagellar motor switch protein YP_005789577.1 COG1317 Flagellar biosynthesis/type III secretory pathway protein YP_005789578.1 COG1154 Deoxyxylulose-5-phosphate synthase YP_005789579.1 COG0481 Membrane GTPase LepA YP_005789580.1 COG0270 Site-specific DNA methylase YP_005789583.1 COG4786 Flagellar basal body rod protein YP_005789584.1 COG0477 Permeases of the major facilitator superfamily YP_005789585.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_005789586.1 COG3893 Inactivated superfamily I helicase YP_005789587.1 COG0021 Transketolase YP_005789588.1 COG0196 FAD synthase YP_005789589.1 COG1189 Predicted rRNA methylase YP_005789591.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_005789593.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005789595.1 COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes YP_005789596.1 COG1106 Predicted ATPases YP_005789598.1 COG3376 High-affinity nickel permease YP_005789601.1 COG2608 Copper chaperone YP_005789602.1 COG2217 Cation transport ATPase YP_005789603.1 COG1183 Phosphatidylserine synthase YP_005789605.1 COG0465 ATP-dependent Zn proteases YP_005789606.1 COG2264 Ribosomal protein L11 methylase YP_005789607.1 COG0784 FOG: CheY-like receiver YP_005789611.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_005789612.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) YP_005789613.1 COG0805 Sec-independent protein secretion pathway component TatC YP_005789614.1 COG1826 Sec-independent protein secretion pathway components YP_005789615.1 COG2255 Holliday junction resolvasome, helicase subunit YP_005789616.1 COG0413 Ketopantoate hydroxymethyltransferase YP_005789620.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005789621.1 COG0850 Septum formation inhibitor YP_005789622.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase YP_005789623.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone YP_005789624.1 COG0083 Homoserine kinase YP_005789625.1 COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination YP_005789626.1 COG0532 Translation initiation factor 2 (IF-2; GTPase) YP_005789627.1 COG0858 Ribosome-binding factor A YP_005789628.1 COG0779 Uncharacterized protein conserved in bacteria YP_005789629.1 COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases YP_005789630.1 COG1408 Predicted phosphohydrolases YP_005789632.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005789633.1 COG2404 Predicted phosphohydrolase (DHH superfamily) YP_005789634.1 COG1298 Flagellar biosynthesis pathway, component FlhA YP_005789635.1 COG0184 Ribosomal protein S15P/S13E YP_005789636.1 COG3307 Lipid A core - O-antigen ligase and related enzymes YP_005789637.1 COG0757 3-dehydroquinate dehydratase II YP_005789638.1 COG0006 Xaa-Pro aminopeptidase YP_005789639.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_005789640.1 COG1419 Flagellar GTP-binding protein YP_005789641.1 COG0455 ATPases involved in chromosome partitioning YP_005789643.1 COG1191 DNA-directed RNA polymerase specialized sigma subunit YP_005789644.1 COG1868 Flagellar motor switch protein YP_005789645.1 COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation YP_005789646.1 COG2731 Beta-galactosidase, beta subunit YP_005789647.1 COG4731 Uncharacterized protein conserved in bacteria YP_005789648.1 COG0735 Fe2+/Zn2+ uptake regulation proteins YP_005789649.1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase YP_005789650.1 HspR; COG0789 Predicted transcriptional regulators YP_005789651.1 COG2214 DnaJ-class molecular chaperone YP_005789653.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_005789655.1 COG0784 FOG: CheY-like receiver YP_005789656.1 COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase YP_005789657.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_005789658.1 COG0833 Amino acid transporters YP_005789659.1 COG0558 Phosphatidylglycerophosphate synthase YP_005789661.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005789662.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_005789663.1 COG0612 Predicted Zn-dependent peptidases YP_005789664.1 COG0167 Dihydroorotate dehydrogenase YP_005789665.1 COG0855 Polyphosphate kinase YP_005789667.1 COG0732 Restriction endonuclease S subunits YP_005789668.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005789669.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005789671.1 HsdR; COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005789672.1 COG2604 Uncharacterized protein conserved in bacteria YP_005789675.1 COG2048 Heterodisulfide reductase, subunit B YP_005789677.1 COG1164 Oligoendopeptidase F YP_005789678.1 COG0475 Kef-type K+ transport systems, membrane components YP_005789680.1 COG0725 ABC-type molybdate transport system, periplasmic component YP_005789681.1 COG4149 ABC-type molybdate transport system, permease component YP_005789682.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component YP_005789683.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005789685.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005789686.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_005789687.1 COG1217 Predicted membrane GTPase involved in stress response YP_005789688.1 COG0338 Site-specific DNA methylase YP_005789690.1 COG0270 Site-specific DNA methylase YP_005789692.1 COG0753 Catalase YP_005789696.1 mosaic CUP0956/HP1116/jhp1044-like protein YP_005789698.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component YP_005789699.1 COG0227 Ribosomal protein L28 YP_005789701.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005789702.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_005789704.1 COG0824 Predicted thioesterase YP_005789705.1 COG0733 Na+-dependent transporters of the SNF family YP_005789706.1 COG0733 Na+-dependent transporters of the SNF family YP_005789707.1 COG2829 Outer membrane phospholipase A YP_005789708.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) YP_005789709.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_005789712.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005789713.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005789715.1 COG0277 FAD/FMN-containing dehydrogenases YP_005789716.1 COG0289 Dihydrodipicolinate reductase YP_005789718.1 COG0174 Glutamine synthetase YP_005789719.1 COG1479 Uncharacterized conserved protein YP_005789720.1 COG0359 Ribosomal protein L9 YP_005789721.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit YP_005789722.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit YP_005789723.1 COG1159 GTPase YP_005789724.1 COG3034 Uncharacterized protein conserved in bacteria YP_005789725.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005789726.1 Cag1 YP_005789727.1 COG0551 Zn-finger domain associated with topoisomerase type I YP_005789730.1 COG3505 Type IV secretory pathway, VirD4 components YP_005789731.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005789732.1 CagZ; Cag6 YP_005789734.1 Cag7; COG2948 Type IV secretory pathway, VirB10 components YP_005789735.1 CagX; Cag8; COG3504 Type IV secretory pathway, VirB9 components YP_005789737.1 CagV; Cag10; COG3736 Type IV secretory pathway, component VirB8 YP_005789738.1 CagU; Cag11 YP_005789743.1 CagQ; Cag14 YP_005789748.1 CagN; Cag17 YP_005789749.1 CagL; Cag18 YP_005789750.1 CagI; Cag19 YP_005789751.1 COG0249 Mismatch repair ATPase (MutS family) YP_005789752.1 CagG; Cag21 YP_005789753.1 CagF: Cag22 YP_005789754.1 COG3451 Type IV secretory pathway, VirB4 components YP_005789755.1 CagD; Cag24 YP_005789757.1 CagB YP_005789758.1 CagA; Cag26; COG0419 ATPase involved in DNA repair YP_005789759.1 COG0796 Glutamate racemase YP_005789760.1 COG1158 Transcription termination factor YP_005789761.1 COG0254 Ribosomal protein L31 YP_005789762.1 COG0313 Predicted methyltransferases YP_005789763.1 COG0566 rRNA methylases YP_005789765.1 COG1217 Predicted membrane GTPase involved in stress response YP_005789766.1 COG0825 Acetyl-CoA carboxylase alpha subunit YP_005789767.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_005789769.1 COG0236 Acyl carrier protein YP_005789770.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005789771.1 COG0828 Ribosomal protein S21 YP_005789774.1 COG3059 Predicted membrane protein YP_005789775.1 COG0253 Diaminopimelate epimerase YP_005789776.1 COG0628 Predicted permease YP_005789777.1 COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase YP_005789778.1 COG0012 Predicted GTPase, probable translation factor YP_005789779.1 COG0260 Leucyl aminopeptidase YP_005789780.1 COG0586 Uncharacterized membrane-associated protein YP_005789781.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins YP_005789783.1 COG0698 Ribose 5-phosphate isomerase RpiB YP_005789784.1 COG1994 Zn-dependent proteases YP_005789785.1 COG0681 Signal peptidase I YP_005789786.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase YP_005789787.1 COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily YP_005789789.1 COG4692 Predicted neuraminidase (sialidase) YP_005789790.1 COG0418 Dihydroorotase YP_005789791.1 COG0810 Periplasmic protein TonB, links inner and outer membranes YP_005789793.1 COG1886 Flagellar motor switch/type III secretory pathway protein YP_005789794.1 COG0177 Predicted EndoIII-related endonuclease YP_005789795.1 COG1918 Fe2+ transport system protein A YP_005789797.1 COG1559 Predicted periplasmic solute-binding protein YP_005789798.1 COG1146 Ferredoxin YP_005789799.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_005789800.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit YP_005789801.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_005789803.1 COG1495 Disulfide bond formation protein DsbB YP_005789806.1 PBP-1A; COG0744 Membrane carboxypeptidase (penicillin-binding protein) YP_005789807.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_005789808.1 COG0840 Methyl-accepting chemotaxis protein YP_005789809.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005789810.1 COG1344 Flagellin and related hook-associated proteins YP_005789811.1 COG2231 Uncharacterized protein related to Endonuclease III YP_005789813.1 COG0407 Uroporphyrinogen-III decarboxylase YP_005789814.1 COG1538 Outer membrane protein YP_005789815.1 COG0845 Membrane-fusion protein YP_005789816.1 COG0841 Cation/multidrug efflux pump YP_005789819.1 COG0842 ABC-type multidrug transport system, permease component YP_005789820.1 COG1131 ABC-type multidrug transport system, ATPase component YP_005789822.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_005789823.1 COG0835 Chemotaxis signal transduction protein YP_005789824.1 COG0173 Aspartyl-tRNA synthetase YP_005789825.1 COG0563 Adenylate kinase and related kinases YP_005789826.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005789827.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005789829.1 COG0221 Inorganic pyrophosphatase YP_005789830.1 COG1193 Mismatch repair ATPase (MutS family) YP_005789832.1 COG0773 UDP-N-acetylmuramate-alanine ligase YP_005789833.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_005789834.1 COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis YP_005789835.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase YP_005789836.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005789837.1 COG1479 Uncharacterized conserved protein YP_005789838.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) YP_005789839.1 COG1740 Ni,Fe-hydrogenase I small subunit YP_005789840.1 COG0374 Ni,Fe-hydrogenase I large subunit YP_005789841.1 COG1969 Ni,Fe-hydrogenase I cytochrome b subunit YP_005789842.1 COG0680 Ni,Fe-hydrogenase maturation factor YP_005789846.1 COG1012 NAD-dependent aldehyde dehydrogenases YP_005789847.1 COG0603 Predicted PP-loop superfamily ATPase YP_005789848.1 poly(A) polymerase; COG0617 tRNA nucleotidyltransferase/poly(A) polymerase YP_005789849.1 COG0778 Nitroreductase YP_005789850.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005789851.1 COG0762 Predicted integral membrane protein YP_005789852.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005789853.1 COG1210 UDP-glucose pyrophosphorylase YP_005789855.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase YP_005789856.1 COG1027 Aspartate ammonia-lyase YP_005789857.1 COG1573 Uracil-DNA glycosylase YP_005789859.1 COG0560 Phosphoserine phosphatase YP_005789860.1 COG1528 Ferritin-like protein YP_005789861.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes YP_005789862.1 COG4775 Outer membrane protein/protective antigen OMA87 YP_005789863.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes YP_005789864.1 COG0612 Predicted Zn-dependent peptidases YP_005789865.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_005789866.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005789867.1 COG2956 Predicted N-acetylglucosaminyl transferase YP_005789868.1 COG0328 Ribonuclease HI YP_005789869.1 COG0571 dsRNA-specific ribonuclease YP_005789870.1 COG0082 Chorismate synthase YP_005789872.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_005789873.1 COG0247 Fe-S oxidoreductase YP_005789874.1 COG4889 Predicted helicase YP_005789875.1 COG4889 Predicted helicase YP_005789877.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_005789879.1 COG0582 Integrase YP_005789880.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_005789881.1 COG0730 Predicted permeases YP_005789882.1 COG0673 Predicted dehydrogenases and related proteins YP_005789883.1 COG0209 Ribonucleotide reductase, alpha subunit YP_005789886.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_005789888.1 COG1338 Flagellar biosynthesis pathway, component FliP YP_005789889.1 COG4772 Outer membrane receptor for Fe3+-dicitrate YP_005789890.1 COG0370 Fe2+ transport system protein B YP_005789891.1 COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB YP_005789892.1 COG0863 DNA modification methylase YP_005789894.1 COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB YP_005789895.1 COG0183 Acetyl-CoA acetyltransferase YP_005789896.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit YP_005789897.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit YP_005789898.1 COG2031 Short chain fatty acids transporter YP_005789899.1 COG3528 Uncharacterized protein conserved in bacteria YP_005789900.1 COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit YP_005789901.1 COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit YP_005789902.1 COG4647 Acetone carboxylase, gamma subunit YP_005789903.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_005789904.1 COG0818 Diacylglycerol kinase YP_005789905.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005789907.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_005789909.1 COG0178 Excinuclease ATPase subunit YP_005789911.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis YP_005789913.1 COG1912 Uncharacterized conserved protein YP_005789914.1 COG1896 Predicted hydrolases of HD superfamily YP_005789915.1 COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog YP_005789916.1 COG1137 ABC-type (unclassified) transport system, ATPase component YP_005789917.1 COG0802 Predicted ATPase or kinase YP_005789918.1 COG2812 DNA polymerase III, gamma/tau subunits YP_005789919.1 COG1279 Lysine efflux permease YP_005789922.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D YP_005789923.1 COG2704 Anaerobic C4-dicarboxylate transporter YP_005789926.1 COG0042 tRNA-dihydrouridine synthase YP_005789927.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_005789929.1 COG0621 2-methylthioadenine synthetase YP_005789932.1 COG0218 Predicted GTPase YP_005789934.1 COG0621 2-methylthioadenine synthetase YP_005789935.1 COG2236 Predicted phosphoribosyltransferases YP_005789936.1 COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase YP_005789937.1 COG1267 Phosphatidylglycerophosphatase A and related proteins YP_005789938.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes YP_005789939.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_005789940.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase YP_005789941.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_005789942.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_005789943.1 COG0772 Bacterial cell division membrane protein YP_005789944.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005789945.1 COG3401 Fibronectin type 3 domain-containing protein YP_005789946.1 COG0220 Predicted S-adenosylmethionine-dependent methyltransferase YP_005789947.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005789948.1 COG2177 Cell division protein YP_005789949.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005789950.1 COG1334 Uncharacterized flagellar protein FlaG YP_005789951.1 COG1345 Flagellar capping protein YP_005789952.1 COG1516 Flagellin-specific chaperone FliS YP_005789954.1 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 YP_005789956.1 COG0388 Predicted amidohydrolase YP_005789957.1 COG2056 Predicted permease YP_005789958.1 COG0534 Na+-driven multidrug efflux pump YP_005789959.1 COG1418 Predicted HD superfamily hydrolase YP_005789960.1 COG0212 5-formyltetrahydrofolate cyclo-ligase YP_005789962.1 COG0552 Signal recognition particle GTPase YP_005789963.1 COG0727 Predicted Fe-S-cluster oxidoreductase YP_005789965.1 COG1196 Chromosome segregation ATPases YP_005789966.1 COG2896 Molybdenum cofactor biosynthesis enzyme YP_005789967.1 COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A YP_005789968.1 COG1377 Flagellar biosynthesis pathway, component FlhB YP_005789970.1 COG0860 N-acetylmuramoyl-L-alanine amidase YP_005789971.1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase YP_005789972.1 COG0162 Tyrosyl-tRNA synthetase YP_005789973.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005789974.1 COG1758 DNA-directed RNA polymerase, subunit K/omega YP_005789975.1 COG0528 Uridylate kinase YP_005789976.1 COG1427 Predicted periplasmic solute-binding protein YP_005789977.1 COG1049 Aconitase B YP_005789982.1 COG2834 Outer membrane lipoprotein-sorting protein YP_005789983.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_005789984.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component YP_005789987.1 COG0270 Site-specific DNA methylase YP_005789988.1 COG2217 Cation transport ATPase YP_005789989.1 COG0606 Predicted ATPase with chaperone activity YP_005789990.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005789991.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_005789992.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_005789995.1 COG0315 Molybdenum cofactor biosynthesis enzyme YP_005789996.1 COG0521 Molybdopterin biosynthesis enzymes YP_005789997.1 COG0314 Molybdopterin converting factor, large subunit YP_005789998.1 COG1977 Molybdopterin converting factor, small subunit YP_005789999.1 COG0807 GTP cyclohydrolase II YP_005790001.1 COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_005790002.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005790003.1 COG1451 Predicted metal-dependent hydrolase YP_005790004.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) YP_005790005.1 COG1580 Flagellar basal body-associated protein YP_005790006.1 COG0742 N6-adenine-specific methylase YP_005790008.1 COG1565 Uncharacterized conserved protein YP_005790009.1 COG0491 Zn-dependent hydrolases, including glyoxylases YP_005790010.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 YP_005790011.1 COG1291 Flagellar motor component YP_005790012.1 COG1360 Flagellar motor protein YP_005790014.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component YP_005790015.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components YP_005790017.1 COG0322 Nuclease subunit of the excinuclease complex YP_005790018.1 COG0460 Homoserine dehydrogenase YP_005790019.1 COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase YP_005790020.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005790021.1 COG0492 Thioredoxin reductase YP_005790022.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005790023.1 COG0724 RNA-binding proteins (RRM domain) YP_005790024.1 COG0356 F0F1-type ATP synthase, subunit a YP_005790025.1 COG0516 IMP dehydrogenase/GMP reductase YP_005790026.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_005790027.1 COG0237 Dephospho-CoA kinase YP_005790028.1 COG0421 Spermidine synthase YP_005790030.1 COG1160 Predicted GTPases YP_005790031.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005790032.1 COG3018 Uncharacterized protein conserved in bacteria YP_005790034.1 COG2067 Long-chain fatty acid transport protein YP_005790035.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases YP_005790036.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase YP_005790040.1 COG1083 CMP-N-acetylneuraminic acid synthetase YP_005790041.1 COG0381 UDP-N-acetylglucosamine 2-epimerase YP_005790042.1 COG2089 Sialic acid synthase YP_005790043.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005790046.1 COG0352 Thiamine monophosphate synthase YP_005790047.1 COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase YP_005790048.1 COG2145 Hydroxyethylthiazole kinase, sugar kinase family YP_005790049.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005790050.1 COG0270 Site-specific DNA methylase YP_005790052.1 COG0671 Membrane-associated phospholipid phosphatase YP_005790053.1 COG2958 Uncharacterized protein conserved in bacteria YP_005790054.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005790055.1 COG0516 IMP dehydrogenase/GMP reductase YP_005790056.1 COG0279 Phosphoheptose isomerase YP_005790057.1 COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase YP_005790058.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_005790059.1 COG0241 Histidinol phosphatase and related phosphatases YP_005790060.1 COG2836 Uncharacterized conserved protein YP_005790061.1 COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor YP_005790064.1 COG0756 dUTPase YP_005790065.1 COG0782 Transcription elongation factor YP_005790066.1 COG0763 Lipid A disaccharide synthetase YP_005790068.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) YP_005790069.1 COG1749 Flagellar hook protein FlgE YP_005790070.1 COG2134 CDP-diacylglycerol pyrophosphatase YP_005790071.1 COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism YP_005790074.1 COG0753 Catalase YP_005790075.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_005790076.1 COG0817 Holliday junction resolvasome, endonuclease subunit YP_005790077.1 COG1432 Uncharacterized conserved protein YP_005790079.1 COG0632 Holliday junction resolvasome, DNA-binding subunit YP_005790081.1 COG0728 Uncharacterized membrane protein, putative virulence factor YP_005790082.1 COG0215 Cysteinyl-tRNA synthetase YP_005790084.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components YP_005790085.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component YP_005790086.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005790087.1 COG1607 Acyl-CoA hydrolase YP_005790088.1 COG3041 Uncharacterized protein conserved in bacteria YP_005790095.1 COG0409 Hydrogenase maturation factor YP_005790096.1 COG0298 Hydrogenase maturation factor YP_005790097.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase YP_005790099.1 COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain YP_005790100.1 COG0282 Acetate kinase YP_005790101.1 COG0280 Phosphotransacetylase YP_005790103.1 COG1843 Flagellar hook capping protein YP_005790104.1 COG1749 Flagellar hook protein FlgE YP_005790106.1 COG0827 Adenine-specific DNA methylase YP_005790107.1 COG0210 Superfamily I DNA and RNA helicases YP_005790112.1 COG1190 Lysyl-tRNA synthetase (class II) YP_005790113.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_005790114.1 COG0009 Putative translation factor (SUA5) YP_005790115.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) YP_005790116.1 COG0670 Integral membrane protein, interacts with FtsH YP_005790117.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_005790118.1 COG5651 PPE-repeat proteins YP_005790120.1 COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog YP_005790121.1 COG0353 Recombinational DNA repair protein (RecF pathway) YP_005790122.1 COG0585 Uncharacterized conserved protein YP_005790123.1 COG0501 Zn-dependent protease with chaperone function YP_005790124.1 COG0302 GTP cyclohydrolase I YP_005790125.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_005790126.1 COG0496 Predicted acid phosphatase YP_005790128.1 COG0720 6-pyruvoyl-tetrahydropterin synthase YP_005790129.1 COG0602 Organic radical activating enzymes YP_005790130.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005790132.1 COG1479 Uncharacterized conserved protein YP_005790133.1 COG1479 Uncharacterized conserved protein YP_005790134.1 COG1479 Uncharacterized conserved protein YP_005790135.1 COG0765 ABC-type amino acid transport system, permease component YP_005790136.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_005790137.1 COG0787 Alanine racemase YP_005790138.1 COG1115 Na+/alanine symporter YP_005790139.1 COG0665 Glycine/D-amino acid oxidases (deaminating) YP_005790140.1 COG0251 Putative translation initiation inhibitor, yjgF family YP_005790142.1 COG1757 Na+/H+ antiporter YP_005790145.1 COG1576 Uncharacterized conserved protein YP_005790146.1 COG0777 Acetyl-CoA carboxylase beta subunit YP_005790147.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_005790148.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced) YP_005790150.1 COG0778 Nitroreductase YP_005790151.1 COG0682 Prolipoprotein diacylglyceryltransferase YP_005790152.1 RNA-uridine isomerase; RNA pseudouridylate synthase; COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005790153.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase YP_005790154.1 COG1579 Zn-ribbon protein, possibly nucleic acid-binding YP_005790155.1 COG0327 Uncharacterized conserved protein YP_005790156.1 COG0752 Glycyl-tRNA synthetase, alpha subunit YP_005790157.1 COG0240 Glycerol-3-phosphate dehydrogenase YP_005790159.1 COG0699 Predicted GTPases (dynamin-related) YP_005790160.1 COG0699 Predicted GTPases (dynamin-related) YP_005790161.1 COG3309 Uncharacterized virulence-associated protein D YP_005790163.1 COG3696 Putative silver efflux pump YP_005790164.1 COG0845 Membrane-fusion protein YP_005790166.1 COG0751 Glycyl-tRNA synthetase, beta subunit YP_005790168.1 COG0696 Phosphoglyceromutase YP_005790169.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_005790170.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_005790171.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005790172.1 COG0849 Actin-like ATPase involved in cell division YP_005790173.1 COG0206 Cell division GTPase YP_005790174.1 COG0668 Small-conductance mechanosensitive channel YP_005790176.1 COG1570 Exonuclease VII, large subunit YP_005790179.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_005790182.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_005790184.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits YP_005790185.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits YP_005790186.1 COG0515 Serine/threonine protein kinase YP_005790187.1 COG0631 Serine/threonine protein phosphatase YP_005790188.1 COG3839 ABC-type sugar transport systems, ATPase components YP_005790190.1 COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain YP_005790191.1 COG3843 Type IV secretory pathway, VirD2 components (relaxase) YP_005790192.1 COG3177 Uncharacterized conserved protein YP_005790202.1 COG1192 ATPases involved in chromosome partitioning YP_005790206.1 COG0550 Topoisomerase IA YP_005790209.1 COG1192 ATPases involved in chromosome partitioning YP_005790212.1 COG3041 Uncharacterized protein conserved in bacteria YP_005790213.1 COG3505 Type IV secretory pathway, VirD4 components YP_005790217.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005790221.1 COG2948 Type IV secretory pathway, VirB10 components YP_005790222.1 COG3504 Type IV secretory pathway, VirB9 components YP_005790223.1 COG3736 Type IV secretory pathway, component VirB8 YP_005790225.1 COG3451 Type IV secretory pathway, VirB4 components YP_005790231.1 COG1479 Uncharacterized conserved protein YP_005790232.1 COG0608 Single-stranded DNA-specific exonuclease YP_005790234.1 COG1166 Arginine decarboxylase (spermidine biosynthesis) YP_005790235.1 COG0438 Glycosyltransferase YP_005790236.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism YP_005790237.1 COG0500 SAM-dependent methyltransferases YP_005790239.1 COG0143 Methionyl-tRNA synthetase YP_005790240.1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases YP_005790241.1 COG0668 Small-conductance mechanosensitive channel YP_005790243.1 COG0518 GMP synthase - Glutamine amidotransferase domain YP_005790245.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing YP_005790247.1 COG0520 Selenocysteine lyase YP_005790248.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_005790249.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit YP_005790250.1 COG0073 EMAP domain YP_005790251.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase YP_005790252.1 COG0761 Penicillin tolerance protein YP_005790253.1 COG0539 Ribosomal protein S1 YP_005790255.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases YP_005790256.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_005790257.1 COG0325 Predicted enzyme with a TIM-barrel fold YP_005790258.1 COG2908 Uncharacterized protein conserved in bacteria YP_005790259.1 COG0835 Chemotaxis signal transduction protein YP_005790260.1 COG0643 Chemotaxis protein histidine kinase and related kinases YP_005790261.1 COG0835 Chemotaxis signal transduction protein YP_005790264.1 COG0831 Urea amidohydrolase (urease) gamma subunit YP_005790265.1 COG0804 Urea amidohydrolase (urease) alpha subunit YP_005790268.1 COG1106 Predicted ATPases YP_005790270.1 COG2077 Peroxiredoxin YP_005790271.1 COG0605 Superoxide dismutase YP_005790272.1 COG0500 SAM-dependent methyltransferases YP_005790273.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase YP_005790275.1 COG0055 F0F1-type ATP synthase, beta subunit YP_005790278.1 COG0501 Zn-dependent protease with chaperone function YP_005790279.1 COG2890 Methylase of polypeptide chain release factors YP_005790280.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase YP_005790282.1 COG1333 ResB protein required for cytochrome c biosynthesis YP_005790283.1 COG2143 Thioredoxin-related protein YP_005790284.1 COG0276 Protoheme ferro-lyase (ferrochelatase) YP_005790286.1 COG1385 Uncharacterized protein conserved in bacteria YP_005790289.1 COG0717 Deoxycytidine deaminase YP_005790290.1 COG0511 Biotin carboxyl carrier protein YP_005790291.1 COG0439 Biotin carboxylase YP_005790295.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis YP_005790296.1 COG0208 Ribonucleotide reductase, beta subunit YP_005790297.1 COG2518 Protein-L-isoaspartate carboxylmethyltransferase YP_005790298.1 COG0795 Predicted permeases YP_005790299.1 COG0101 Pseudouridylate synthase YP_005790300.1 COG1087 UDP-glucose 4-epimerase YP_005790302.1 COG4221 Short-chain alcohol dehydrogenase of unknown specificity YP_005790303.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005790304.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase YP_005790305.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase YP_005790306.1 COG0364 Glucose-6-phosphate 1-dehydrogenase YP_005790307.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase YP_005790308.1 COG0837 Glucokinase YP_005790309.1 COG1064 Zn-dependent alcohol dehydrogenases YP_005790310.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005790311.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005790315.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_005790316.1 COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit YP_005790317.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_005790318.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit YP_005790319.1 COG0015 Adenylosuccinate lyase YP_005790321.1 COG0556 Helicase subunit of the DNA excision repair complex YP_005790324.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_005790325.1 COG0405 Gamma-glutamyltransferase YP_005790326.1 COG1256 Flagellar hook-associated protein YP_005790328.1 COG0270 Site-specific DNA methylase YP_005790331.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 YP_005790333.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_005790334.1 COG0823 Periplasmic component of the Tol biopolymer transport system YP_005790336.1 COG0848 Biopolymer transport protein YP_005790337.1 COG0811 Biopolymer transport proteins YP_005790338.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_005790339.1 COG0055 F0F1-type ATP synthase, beta subunit YP_005790340.1 COG0224 F0F1-type ATP synthase, gamma subunit YP_005790341.1 COG0056 F0F1-type ATP synthase, alpha subunit YP_005790343.1 COG0711 F0F1-type ATP synthase, subunit b YP_005790344.1 COG0711 F0F1-type ATP synthase, subunit b YP_005790345.1 COG1475 Predicted transcriptional regulators YP_005790346.1 COG1192 ATPases involved in chromosome partitioning YP_005790347.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase YP_005790348.1 COG0223 Methionyl-tRNA formyltransferase YP_005790349.1 COG1196 Chromosome segregation ATPases YP_005790350.1 COG4487 Uncharacterized protein conserved in bacteria YP_005790354.1 COG0335 Ribosomal protein L19 YP_005790355.1 COG0336 tRNA-(guanine-N1)-methyltransferase YP_005790356.1 COG0806 RimM protein, required for 16S rRNA processing YP_005790357.1 COG1837 Predicted RNA-binding protein (contains KH domain) YP_005790358.1 COG0228 Ribosomal protein S16 YP_005790359.1 COG0541 Signal recognition particle GTPase YP_005790360.1 COG0525 Valyl-tRNA synthetase YP_005790361.1 COG1699 Uncharacterized protein conserved in bacteria YP_005790362.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase YP_005790365.1 COG0345 Pyrroline-5-carboxylate reductase YP_005790366.1 COG2184 Protein involved in cell division YP_005790368.1 COG4278 Uncharacterized conserved protein YP_005790369.1 COG0319 Predicted metal-dependent hydrolase YP_005790370.1 COG0716 Flavodoxins YP_005790371.1 COG0586 Uncharacterized membrane-associated protein YP_005790372.1 COG3197 Uncharacterized protein, possibly involved in nitrogen fixation YP_005790373.1 COG0492 Thioredoxin reductase YP_005790374.1 COG0477 Permeases of the major facilitator superfamily YP_005790375.1 COG0166 Glucose-6-phosphate isomerase YP_005790379.1 COG1966 Carbon starvation protein, predicted membrane protein YP_005790380.1 COG0765 ABC-type amino acid transport system, permease component YP_005790381.1 COG0765 ABC-type amino acid transport system, permease component YP_005790382.1 COG1126 ABC-type polar amino acid transport system, ATPase component YP_005790383.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_005790385.1 COG0738 Fucose permease YP_005790386.1 COG2252 Permeases YP_005790389.1 COG0813 Purine-nucleoside phosphorylase YP_005790390.1 COG1015 Phosphopentomutase YP_005790391.1 COG1972 Nucleoside permease YP_005790392.1 COG0477 Permeases of the major facilitator superfamily YP_005790393.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_005790394.1 COG0475 Kef-type K+ transport systems, membrane components YP_005790395.1 COG0534 Na+-driven multidrug efflux pump YP_005790396.1 COG2814 Arabinose efflux permease YP_005790397.1 COG3338 Carbonic anhydrase YP_005790398.1 COG1757 Na+/H+ antiporter YP_005790400.1 COG0136 Aspartate-semialdehyde dehydrogenase YP_005790401.1 COG0124 Histidyl-tRNA synthetase YP_005790402.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_005790404.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) YP_005790405.1 COG0480 Translation elongation factors (GTPases) YP_005790406.1 COG0049 Ribosomal protein S7 YP_005790407.1 COG0048 Ribosomal protein S12 YP_005790408.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005790410.1 COG0222 Ribosomal protein L7/L12 YP_005790411.1 COG0244 Ribosomal protein L10 YP_005790412.1 COG0081 Ribosomal protein L1 YP_005790413.1 COG0080 Ribosomal protein L11 YP_005790414.1 COG0250 Transcription antiterminator YP_005790415.1 COG0690 Preprotein translocase subunit SecE YP_005790416.1 COG0267 Ribosomal protein L33 YP_005790417.1 COG0050 GTPases - translation elongation factors YP_005790418.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005790419.1 COG0546 Predicted phosphatases YP_005790420.1 COG3392 Adenine-specific DNA methylase YP_005790421.1 IceA YP_005790422.1 COG1045 Serine acetyltransferase YP_005790424.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K YP_005790425.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) YP_005790426.1 COG1926 Predicted phosphoribosyltransferases YP_005790427.1 COG1452 Organic solvent tolerance protein OstA YP_005790429.1 COG0151 Phosphoribosylamine-glycine ligase YP_005790430.1 COG1131 ABC-type multidrug transport system, ATPase component YP_005790431.1 COG0020 Undecaprenyl pyrophosphate synthase YP_005790432.1 COG0277 FAD/FMN-containing dehydrogenases YP_005790433.1 COG0607 Rhodanese-related sulfurtransferase YP_005790434.1 COG1587 Uroporphyrinogen-III synthase YP_005790435.1 COG0239 Integral membrane protein possibly involved in chromosome condensation YP_005790436.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_005790437.1 COG2863 Cytochrome c553 YP_005790439.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005790440.1 COG0527 Aspartokinases YP_005790442.1 COG0470 ATPase involved in DNA replication YP_005790443.1 COG0294 Dihydropteroate synthase and related enzymes YP_005790446.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily YP_005790448.1 COG2952 Uncharacterized protein conserved in bacteria YP_005790449.1 COG0505 Carbamoylphosphate synthase small subunit YP_005790450.1 COG0388 Predicted amidohydrolase YP_005790453.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation YP_005790454.1 COG0013 Alanyl-tRNA synthetase YP_005790455.1 COG2841 Uncharacterized protein conserved in bacteria YP_005790459.1 COG0238 Ribosomal protein S18 YP_005790460.1 COG0629 Single-stranded DNA-binding protein YP_005790461.1 COG0360 Ribosomal protein S6 YP_005790463.1 COG0557 Exoribonuclease R YP_005790464.1 COG0169 Shikimate 5-dehydrogenase YP_005790466.1 COG4174 ABC-type uncharacterized transport system, permease component YP_005790467.1 COG4166 ABC-type oligopeptide transport system, periplasmic component YP_005790468.1 COG0180 Tryptophanyl-tRNA synthetase YP_005790469.1 COG0500 SAM-dependent methyltransferases YP_005790470.1 COG1314 Preprotein translocase subunit SecG YP_005790471.1 COG0233 Ribosome recycling factor YP_005790472.1 COG0461 Orotate phosphoribosyltransferase YP_005790473.1 COG1714 Predicted membrane protein/domain YP_005790474.1 COG0846 NAD-dependent protein deacetylases, SIR2 family YP_005790475.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) YP_005790476.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases YP_005790477.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit YP_005790478.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_005790481.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_005790482.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) YP_005790483.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_005790484.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) YP_005790485.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) YP_005790486.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_005790487.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) YP_005790488.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) YP_005790489.1 COG1729 Uncharacterized protein conserved in bacteria YP_005790490.1 COG1109 Phosphomannomutase YP_005790492.1 COG0159 Tryptophan synthase alpha chain YP_005790493.1 COG0133 Tryptophan synthase beta chain YP_005790494.1 COG0134 Indole-3-glycerol phosphate synthase YP_005790495.1 COG0547 Anthranilate phosphoribosyltransferase YP_005790496.1 COG0512 Anthranilate/para-aminobenzoate synthases component II YP_005790497.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_005790498.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_005790499.1 COG2503 Predicted secreted acid phosphatase YP_005790500.1 COG2353 Uncharacterized conserved protein YP_005790501.1 COG0819 Putative transcription activator YP_005790502.1 COG3201 Nicotinamide mononucleotide transporter YP_005790503.1 COG1564 Thiamine pyrophosphokinase YP_005790506.1 COG0203 Ribosomal protein L17 YP_005790507.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_005790508.1 COG0522 Ribosomal protein S4 and related proteins YP_005790509.1 COG0100 Ribosomal protein S11 YP_005790510.1 COG0099 Ribosomal protein S13 YP_005790511.1 COG0257 Ribosomal protein L36 YP_005790512.1 COG0361 Translation initiation factor 1 (IF-1) YP_005790513.1 COG0024 Methionine aminopeptidase YP_005790514.1 COG0201 Preprotein translocase subunit SecY YP_005790515.1 COG0200 Ribosomal protein L15 YP_005790516.1 COG0098 Ribosomal protein S5 YP_005790517.1 COG0256 Ribosomal protein L18 YP_005790518.1 COG0097 Ribosomal protein L6P/L9E YP_005790519.1 COG0096 Ribosomal protein S8 YP_005790520.1 COG0199 Ribosomal protein S14 YP_005790521.1 COG0094 Ribosomal protein L5 YP_005790522.1 COG0198 Ribosomal protein L24 YP_005790523.1 COG0093 Ribosomal protein L14 YP_005790524.1 COG0186 Ribosomal protein S17 YP_005790525.1 COG0255 Ribosomal protein L29 YP_005790526.1 COG0197 Ribosomal protein L16/L10E YP_005790527.1 COG0092 Ribosomal protein S3 YP_005790528.1 COG0091 Ribosomal protein L22 YP_005790529.1 COG0185 Ribosomal protein S19 YP_005790530.1 COG0090 Ribosomal protein L2 YP_005790531.1 COG0089 Ribosomal protein L23 YP_005790532.1 COG0088 Ribosomal protein L4 YP_005790533.1 COG0087 Ribosomal protein L3 YP_005790534.1 COG0051 Ribosomal protein S10 YP_005790535.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components YP_005790537.1 COG0164 Ribonuclease HII YP_005790539.1 COG0114 Fumarase YP_005790542.1 COG0845 Membrane-fusion protein YP_005790543.1 COG3696 Putative silver efflux pump YP_005790544.1 COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) YP_005790545.1 COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) YP_005790546.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_005790548.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_005790549.1 COG2214 DnaJ-class molecular chaperone YP_005790550.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase YP_005790551.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain YP_005790552.1 COG0811 Biopolymer transport proteins YP_005790553.1 COG0848 Biopolymer transport protein YP_005790554.1 COG0810 Periplasmic protein TonB, links inner and outer membranes YP_005790555.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance YP_005790556.1 COG0598 Mg2+ and Co2+ transporters YP_005790557.1 COG0126 3-phosphoglycerate kinase YP_005790558.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_005790559.1 COG0692 Uracil DNA glycosylase YP_005790560.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005790562.1 COG0793 Periplasmic protease YP_005790565.1 COG0863 DNA modification methylase YP_005790566.1 COG0157 Nicotinate-nucleotide pyrophosphorylase YP_005790567.1 COG0379 Quinolinate synthase YP_005790568.1 COG0688 Phosphatidylserine decarboxylase YP_005790570.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005790571.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases YP_005790572.1 COG0658 Predicted membrane metal-binding protein YP_005790573.1 COG0305 Replicative DNA helicase YP_005790574.1 COG0062 Uncharacterized conserved protein YP_005790575.1 COG0642 Signal transduction histidine kinase YP_005790576.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005790577.1 MboIIR YP_005790578.1 COG0863 DNA modification methylase YP_005790579.1 COG0863 DNA modification methylase YP_005790581.1 COG2189 Adenine specific DNA methylase Mod YP_005790583.1 COG0338 Site-specific DNA methylase YP_005790585.1 COG2189 Adenine specific DNA methylase Mod YP_005790586.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005790587.1 COG1792 Cell shape-determining protein YP_005790588.1 COG1077 Actin-like ATPase involved in cell morphogenesis YP_005790589.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_005790590.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_005790591.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_005790592.1 COG1699 Uncharacterized protein conserved in bacteria YP_005790594.1 COG4105 DNA uptake lipoprotein YP_005790595.1 COG0466 ATP-dependent Lon protease, bacterial type YP_005790596.1 COG0287 Prephenate dehydrogenase YP_005790597.1 COG1864 DNA/RNA endonuclease G, NUC1 YP_005790598.1 COG2189 Adenine specific DNA methylase Mod YP_005790599.1 COG3421 Uncharacterized protein conserved in bacteria YP_005790600.1 COG0502 Biotin synthase and related enzymes YP_005790601.1 COG1295 Predicted membrane protein YP_005790605.1 COG0780 Enzyme related to GTP cyclohydrolase I YP_005790606.1 COG0799 Uncharacterized homolog of plant Iojap protein YP_005790607.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase YP_005790608.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_005790611.1 COG0812 UDP-N-acetylmuramate dehydrogenase YP_005790612.1 COG1987 Flagellar biosynthesis pathway, component FliQ YP_005790613.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase YP_005790614.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005790615.1 COG0060 Isoleucyl-tRNA synthetase YP_005790616.1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) YP_005790619.1 COG0820 Predicted Fe-S-cluster redox enzyme YP_005790620.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation YP_005790621.1 COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain YP_005790622.1 COG0030 Dimethyladenosine transferase (rRNA methylation) YP_005790626.1 COG0732 Restriction endonuclease S subunits YP_005790627.1 COG0788 Formyltetrahydrofolate hydrolase YP_005790628.1 protease IV; endopeptidase IV; COG0616 Periplasmic serine proteases (ClpP class) YP_005790634.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family YP_005790635.1 COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) YP_005790636.1 COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase YP_005790637.1 COG0691 tmRNA-binding protein YP_005790638.1 COG0811 Biopolymer transport proteins YP_005790639.1 COG0848 Biopolymer transport protein YP_005790640.1 COG0230 Ribosomal protein L34 YP_005790641.1 COG0594 RNase P protein component YP_005790642.1 COG0759 Uncharacterized conserved protein YP_005790643.1 COG0706 Preprotein translocase subunit YidC YP_005790644.1 COG1315 Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain YP_005790645.1 COG0486 Predicted GTPase YP_005790649.1 COG0481 Membrane GTPase LepA YP_005790651.1 COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family) YP_005790652.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005790653.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases YP_005790654.1 COG0587 DNA polymerase III, alpha subunit YP_005790655.1 COG1858 Cytochrome c peroxidase YP_005790657.1 COG3187 Heat shock protein YP_005790659.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_005790660.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_005790661.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component YP_005790663.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase YP_005790665.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_005790668.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005790670.1 COG0125 Thymidylate kinase YP_005790671.1 COG0669 Phosphopantetheine adenylyltransferase YP_005790672.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_005790674.1 COG4108 Peptide chain release factor RF-3 YP_005790675.1 COG0210 Superfamily I DNA and RNA helicases YP_005790676.1 COG0457 FOG: TPR repeat YP_005790677.1 COG0172 Seryl-tRNA synthetase YP_005790678.1 COG0388 Predicted amidohydrolase YP_005790679.1 COG1722 Exonuclease VII small subunit YP_005790680.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis YP_005790681.1 COG1981 Predicted membrane protein YP_005790682.1 COG1739 Uncharacterized conserved protein YP_005790683.1 COG0842 ABC-type multidrug transport system, permease component YP_005790684.1 COG0842 ABC-type multidrug transport system, permease component YP_005790685.1 COG0845 Membrane-fusion protein YP_005790686.1 COG1538 Outer membrane protein YP_005790687.1 COG1253 Hemolysins and related proteins containing CBS domains YP_005790688.1 COG0306 Phosphate/sulphate permeases YP_005790689.1 COG0694 Thioredoxin-like proteins and domains YP_005790691.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase YP_005790692.1 COG0176 Transaldolase YP_005790693.1 COG1825 Ribosomal protein L25 (general stress protein Ctc) YP_005790694.1 COG0193 Peptidyl-tRNA hydrolase YP_005790695.1 COG0795 Predicted permeases YP_005790698.1 COG3399 Uncharacterized protein conserved in bacteria YP_005790699.1 COG2217 Cation transport ATPase YP_005790700.1 COG4123 Predicted O-methyltransferase YP_005790701.1 COG0117 Pyrimidine deaminase YP_005790702.1 COG0786 Na+/glutamate symporter YP_005790703.1 COG1748 Saccharopine dehydrogenase and related proteins YP_005790704.1 COG0348 Polyferredoxin YP_005790705.1 COG0344 Predicted membrane protein YP_005790706.1 COG1539 Dihydroneopterin aldolase YP_005790708.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_005790709.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] YP_005790710.1 COG0195 Transcription elongation factor YP_005790711.1 COG1002 Type II restriction enzyme, methylase subunits YP_005790712.1 COG2189 Adenine specific DNA methylase Mod YP_005790713.1 COG1200 RecG-like helicase YP_005790716.1 COG0708 Exonuclease III YP_005790718.1 COG0593 ATPase involved in DNA replication initiation YP_005790719.1 COG0813 Purine-nucleoside phosphorylase YP_005790721.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains YP_005790722.1 COG1351 Predicted alternative thymidylate synthase YP_005790723.1 COG0732 Restriction endonuclease S subunits YP_005790725.1 HsdM; COG0286 Type I restriction-modification system methyltransferase subunit YP_005790726.1 HsdR; COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005790727.1 COG1451 Predicted metal-dependent hydrolase YP_005790728.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_005790729.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family YP_005790730.1 COG0833 Amino acid transporters YP_005790731.1 COG0686 Alanine dehydrogenase YP_005790732.1 COG1479 Uncharacterized conserved protein YP_005790734.1 COG0061 Predicted sugar kinase YP_005790735.1 COG0497 ATPase involved in DNA repair YP_005790736.1 COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP YP_005790740.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_005790741.1 COG0036 Pentose-5-phosphate-3-epimerase YP_005790742.1 COG0158 Fructose-1,6-bisphosphatase YP_005790744.1 COG0827 Adenine-specific DNA methylase YP_005790745.1 COG1160 Predicted GTPases YP_005790747.1 COG0270 Site-specific DNA methylase YP_005790749.1 COG0264 Translation elongation factor Ts YP_005790750.1 COG0052 Ribosomal protein S2 YP_005790752.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) YP_005790753.1 COG3004 Na+/H+ antiporter YP_005790754.1 COG1862 Preprotein translocase subunit YajC YP_005790755.1 COG0342 Preprotein translocase subunit SecD YP_005790756.1 COG0341 Preprotein translocase subunit SecF YP_005790758.1 COG0495 Leucyl-tRNA synthetase YP_005790760.1 COG0285 Folylpolyglutamate synthase YP_005790761.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005790762.1 TagE; COG0739 Membrane proteins related to metalloendopeptidases YP_005790763.1 COG1664 Integral membrane protein CcmA involved in cell shape determination YP_005790764.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_005790765.1 COG0723 Rieske Fe-S protein YP_005790766.1 COG1290 Cytochrome b subunit of the bc complex YP_005790767.1 COG2857 Cytochrome c1 YP_005790769.1 COG1106 Predicted ATPases YP_005790771.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005790772.1 COG1677 Flagellar hook-basal body protein YP_005790773.1 COG1558 Flagellar basal body rod protein YP_005790774.1 COG1815 Flagellar basal body protein YP_005790775.1 COG0772 Bacterial cell division membrane protein YP_005790776.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component YP_005790777.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component YP_005790778.1 COG0450 Peroxiredoxin YP_005790779.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen YP_005790780.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005790782.1 COG0218 Predicted GTPase YP_005790783.1 COG1934 Uncharacterized protein conserved in bacteria YP_005790785.1 COG1778 Low specificity phosphatase (HAD superfamily) YP_005790786.1 COG0797 Lipoproteins YP_005790787.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005790788.1 COG0084 Mg-dependent DNase YP_005790789.1 COG0307 Riboflavin synthase alpha chain YP_005790790.1 COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB YP_005790791.1 COG1135 ABC-type metal ion transport system, ATPase component YP_005790792.1 COG2011 ABC-type metal ion transport system, permease component YP_005790794.1 COG0671 Membrane-associated phospholipid phosphatase YP_005790795.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005790796.1 COG0854 Pyridoxal phosphate biosynthesis protein YP_005790797.1 COG1995 Pyridoxal phosphate biosynthesis protein YP_005790799.1 COG0533 Metal-dependent proteases with possible chaperone activity YP_005790800.1 COG4786 Flagellar basal body rod protein YP_005790804.1 COG4735 Uncharacterized protein conserved in bacteria