-- dump date 20140619_114235 -- class Genbank::CDS -- table cds_note -- id note YP_003927930.1 COG0781 Transcription termination factor YP_003927931.1 COG0054 Riboflavin synthase beta-chain YP_003927932.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase YP_003927933.1 COG0288 Carbonic anhydrase YP_003927934.1 COG0284 Orotidine-5'-phosphate decarboxylase YP_003927935.1 COG0414 Panthothenate synthetase YP_003927941.1 COG0459 Chaperonin GroEL (HSP60 family) YP_003927942.1 COG0234 Co-chaperonin GroES (HSP10) YP_003927943.1 COG0358 DNA primase (bacterial type) YP_003927944.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_003927948.1 COG3451 Type IV secretory pathway, VirB4 components YP_003927949.1 COG3014 Uncharacterized protein conserved in bacteria YP_003927950.1 COG0835 Chemotaxis signal transduction protein YP_003927951.1 COG0019 Diaminopimelate decarboxylase YP_003927952.1 COG0671 Membrane-associated phospholipid phosphatase YP_003927953.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase YP_003927959.1 COG0372 Citrate synthase YP_003927960.1 COG0538 Isocitrate dehydrogenases YP_003927962.1 COG0132 Dethiobiotin synthetase YP_003927964.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins YP_003927965.1 COG2127 Uncharacterized conserved protein YP_003927966.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_003927967.1 COG0853 Aspartate 1-decarboxylase YP_003927968.1 COG0718 Uncharacterized protein conserved in bacteria YP_003927969.1 COG1199 Rad3-related DNA helicases YP_003927972.1 COG3736 Type IV secretory pathway, component VirB8 YP_003927973.1 COG3504 Type IV secretory pathway, VirB9 components YP_003927974.1 COG2948 Type IV secretory pathway, VirB10 components YP_003927975.1 COG0836 Mannose-1-phosphate guanylyltransferase YP_003927976.1 COG1089 GDP-D-mannose dehydratase YP_003927977.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_003927980.1 COG0309 Hydrogenase maturation factor YP_003927981.1 COG0068 Hydrogenase maturation factor YP_003927982.1 COG2957 Peptidylarginine deiminase and related enzymes YP_003927983.1 COG0863 DNA modification methylase YP_003927984.1 COG0270 Site-specific DNA methylase YP_003927986.1 COG0270 Site-specific DNA methylase YP_003927987.1 COG0591 Na+/proline symporter YP_003927988.1 COG0506 Proline dehydrogenase YP_003927998.1 COG0829 Urease accessory protein UreH YP_003927999.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase YP_003928000.1 COG0830 Urease accessory protein UreF YP_003928001.1 COG2371 Urease accessory protein UreE YP_003928002.1 COG1138 Cytochrome c biogenesis factor YP_003928003.1 COG0804 Urea amidohydrolase (urease) alpha subunit YP_003928004.1 COG0831 Urea amidohydrolase (urease) gamma subunit YP_003928005.1 COG0597 Lipoprotein signal peptidase YP_003928006.1 COG1109 Phosphomannomutase YP_003928007.1 COG0268 Ribosomal protein S20 YP_003928008.1 COG0216 Protein chain release factor A YP_003928013.1 COG0840 Methyl-accepting chemotaxis protein YP_003928014.1 COG0103 Ribosomal protein S9 YP_003928015.1 COG0102 Ribosomal protein L13 YP_003928017.1 COG0579 Predicted dehydrogenase YP_003928018.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) YP_003928019.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_003928020.1 COG0775 Nucleoside phosphorylase YP_003928021.1 COG0331 (acyl-carrier-protein) S-malonyltransferase YP_003928022.1 COG2958 Uncharacterized protein conserved in bacteria YP_003928023.1 COG0863 DNA modification methylase YP_003928024.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component YP_003928025.1 COG1052 Lactate dehydrogenase and related dehydrogenases YP_003928027.1 COG0498 Threonine synthase YP_003928028.1 COG0840 Methyl-accepting chemotaxis protein YP_003928029.1 COG1636 Uncharacterized protein conserved in bacteria YP_003928031.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_003928032.1 COG0840 Methyl-accepting chemotaxis protein YP_003928033.1 COG0737 5'-nucleotidase/2', 3'-cyclic phosphodiesterase and related esterases YP_003928034.1 COG1854 LuxS protein involved in autoinducer AI2 synthesis YP_003928035.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases YP_003928036.1 COG0031 Cysteine synthase YP_003928038.1 COG0443 Molecular chaperone YP_003928039.1 COG0576 Molecular chaperone GrpE (heat shock protein) YP_003928040.1 COG1420 Transcriptional regulator of heat shock gene YP_003928041.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases YP_003928043.1 COG2604 Uncharacterized protein conserved in bacteria YP_003928044.1 COG1344 Flagellin and related hook-associated proteins YP_003928045.1 COG0550 Topoisomerase IA YP_003928046.1 COG0731 Fe-S oxidoreductases YP_003928048.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_003928050.1 COG0441 Threonyl-tRNA synthetase YP_003928051.1 COG0290 Translation initiation factor 3 (IF-3) YP_003928052.1 COG0291 Ribosomal protein L35 YP_003928053.1 COG0292 Ribosomal protein L20 YP_003928059.1 COG1760 L-serine deaminase YP_003928060.1 COG0814 Amino acid permeases YP_003928062.1 COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase YP_003928065.1 COG1225 Peroxiredoxin YP_003928066.1 COG1556 Uncharacterized conserved protein YP_003928067.1 COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain YP_003928068.1 COG0247 Fe-S oxidoreductase YP_003928069.1 COG1620 L-lactate permease YP_003928070.1 COG1620 L-lactate permease YP_003928071.1 COG1194 A/G-specific DNA glycosylase YP_003928072.1 COG0471 Di- and tricarboxylate transporters YP_003928073.1 COG3278 Cbb3-type cytochrome oxidase, subunit 1 YP_003928074.1 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit YP_003928076.1 COG2010 Cytochrome c, mono- and diheme variants YP_003928079.1 COG0443 Molecular chaperone YP_003928082.1 COG2107 Predicted periplasmic solute-binding protein YP_003928083.1 COG0468 RecA/RadA recombinase YP_003928084.1 COG0148 Enolase YP_003928087.1 COG0703 Shikimate kinase YP_003928089.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003928090.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003928092.1 COG0217 Uncharacterized conserved protein YP_003928093.1 COG0113 Delta-aminolevulinic acid dehydratase YP_003928094.1 COG0642 Signal transduction histidine kinase YP_003928095.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003928097.1 COG0457 FOG: TPR repeat YP_003928098.1 COG0826 Collagenase and related proteases YP_003928100.1 COG1186 Protein chain release factor B YP_003928101.1 COG0303 Molybdopterin biosynthesis enzyme YP_003928102.1 COG1684 Flagellar biosynthesis pathway, component FliR YP_003928105.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_003928106.1 COG0191 Fructose/tagatose bisphosphate aldolase YP_003928107.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) YP_003928108.1 COG0270 Site-specific DNA methylase YP_003928110.1 COG1401 GTPase subunit of restriction endonuclease YP_003928112.1 COG2089 Sialic acid synthase YP_003928113.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_003928114.1 COG0815 Apolipoprotein N-acyltransferase YP_003928115.1 COG1286 Uncharacterized membrane protein, required for colicin V production YP_003928116.1 COG1190 Lysyl-tRNA synthetase (class II) YP_003928117.1 COG0112 Glycine/serine hydroxymethyltransferase YP_003928120.1 COG1479 Uncharacterized conserved protein YP_003928121.1 COG1479 Uncharacterized conserved protein YP_003928122.1 COG2862 Predicted membrane protein YP_003928123.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_003928124.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit YP_003928125.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_003928126.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_003928127.1 COG0149 Triosephosphate isomerase YP_003928128.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_003928129.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003928130.1 COG0192 S-adenosylmethionine synthetase YP_003928131.1 COG0105 Nucleoside diphosphate kinase YP_003928133.1 COG0333 Ribosomal protein L32 YP_003928134.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme YP_003928135.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_003928139.1 COG0489 ATPases involved in chromosome partitioning YP_003928140.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003928143.1 COG0326 Molecular chaperone, HSP90 family YP_003928145.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003928147.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases YP_003928148.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division YP_003928149.1 COG0471 Di- and tricarboxylate transporters YP_003928150.1 COG0575 CDP-diglyceride synthetase YP_003928151.1 COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003928154.1 COG1881 Phospholipid-binding protein YP_003928156.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_003928157.1 COG0822 NifU homolog involved in Fe-S cluster formation YP_003928159.1 COG1066 Predicted ATP-dependent serine protease YP_003928160.1 COG0225 Peptide methionine sulfoxide reductase YP_003928162.1 COG0730 Predicted permeases YP_003928166.1 COG0659 Sulfate permease and related transporters (MFS superfamily) YP_003928168.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_003928169.1 COG1651 Protein-disulfide isomerase YP_003928171.1 COG0754 Glutathionylspermidine synthase YP_003928173.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003928175.1 COG0181 Porphobilinogen deaminase YP_003928176.1 COG0442 Prolyl-tRNA synthetase YP_003928177.1 COG0373 Glutamyl-tRNA reductase YP_003928178.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_003928181.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) YP_003928182.1 COG0642 Signal transduction histidine kinase YP_003928184.1 COG1706 Flagellar basal-body P-ring protein YP_003928185.1 COG0513 Superfamily II DNA and RNA helicases YP_003928186.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_003928188.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase YP_003928189.1 COG4239 ABC-type uncharacterized transport system, permease component YP_003928193.1 COG0104 Adenylosuccinate synthase YP_003928195.1 COG3334 Uncharacterized conserved protein YP_003928196.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_003928197.1 COG1570 Exonuclease VII, large subunit YP_003928199.1 COG0863 DNA modification methylase YP_003928200.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_003928201.1 COG0785 Cytochrome c biogenesis protein YP_003928202.1 COG0044 Dihydroorotase and related cyclic amidohydrolases YP_003928203.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases YP_003928205.1 COG0621 2-methylthioadenine synthetase YP_003928206.1 COG2121 Uncharacterized protein conserved in bacteria YP_003928210.1 COG0727 Predicted Fe-S-cluster oxidoreductase YP_003928211.1 COG0457 FOG: TPR repeat YP_003928213.1 COG1145 Ferredoxin YP_003928214.1 COG0248 Exopolyphosphatase YP_003928215.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003928216.1 COG1560 Lauroyl/myristoyl acyltransferase YP_003928217.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase YP_003928218.1 COG3400 Uncharacterized protein conserved in bacteria YP_003928219.1 COG0337 3-dehydroquinate synthetase YP_003928220.1 COG0668 Small-conductance mechanosensitive channel YP_003928221.1 COG0621 2-methylthioadenine synthetase YP_003928222.1 COG0465 ATP-dependent Zn proteases YP_003928226.1 COG0019 Diaminopimelate decarboxylase YP_003928227.1 COG1605 Chorismate mutase YP_003928228.1 COG4866 Uncharacterized conserved protein YP_003928229.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_003928230.1 COG0388 Predicted amidohydrolase YP_003928231.1 COG1344 Flagellin and related hook-associated proteins YP_003928233.1 COG0261 Ribosomal protein L21 YP_003928234.1 COG0211 Ribosomal protein L27 YP_003928235.1 COG0747 ABC-type dipeptide transport system, periplasmic component YP_003928236.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_003928237.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_003928238.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component YP_003928239.1 COG4608 ABC-type oligopeptide transport system, ATPase component YP_003928240.1 COG0536 Predicted GTPase YP_003928243.1 COG0001 Glutamate-1-semialdehyde aminotransferase YP_003928246.1 COG0388 Predicted amidohydrolase YP_003928247.1 COG0726 Predicted xylanase/chitin deacetylase YP_003928249.1 COG0523 Putative GTPases (G3E family) YP_003928250.1 COG0477 Permeases of the major facilitator superfamily YP_003928254.1 COG0748 Putative heme iron utilization protein YP_003928255.1 COG0018 Arginyl-tRNA synthetase YP_003928256.1 COG1826 Sec-independent protein secretion pathway components YP_003928257.1 COG0194 Guanylate kinase YP_003928259.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_003928261.1 COG2063 Flagellar basal body L-ring protein YP_003928262.1 COG1083 CMP-N-acetylneuraminic acid synthetase YP_003928263.1 COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase YP_003928264.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins YP_003928265.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase YP_003928266.1 COG0171 NAD synthase YP_003928267.1 COG0059 Ketol-acid reductoisomerase YP_003928268.1 COG2894 Septum formation inhibitor-activating ATPase YP_003928269.1 COG0851 Septum formation topological specificity factor YP_003928270.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_003928271.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) YP_003928273.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003928277.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_003928278.1 COG0608 Single-stranded DNA-specific exonuclease YP_003928279.1 COG0504 CTP synthase (UTP-ammonia lyase) YP_003928280.1 COG0671 Membrane-associated phospholipid phosphatase YP_003928281.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein YP_003928282.1 COG1536 Flagellar motor switch protein YP_003928283.1 COG1317 Flagellar biosynthesis/type III secretory pathway protein YP_003928284.1 COG1154 Deoxyxylulose-5-phosphate synthase YP_003928285.1 COG0481 Membrane GTPase LepA YP_003928286.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_003928289.1 COG4786 Flagellar basal body rod protein YP_003928290.1 COG0477 Permeases of the major facilitator superfamily YP_003928292.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_003928293.1 COG3893 Inactivated superfamily I helicase YP_003928294.1 COG0021 Transketolase YP_003928295.1 COG0196 FAD synthase YP_003928296.1 COG1189 Predicted rRNA methylase YP_003928298.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_003928300.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003928302.1 COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes YP_003928303.1 COG1106 Predicted ATPases YP_003928305.1 COG3376 High-affinity nickel permease YP_003928309.1 COG2608 Copper chaperone YP_003928310.1 COG2217 Cation transport ATPase YP_003928311.1 COG1183 Phosphatidylserine synthase YP_003928313.1 COG0465 ATP-dependent Zn proteases YP_003928314.1 COG2264 Ribosomal protein L11 methylase YP_003928315.1 COG0784 FOG: CheY-like receiver YP_003928319.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_003928320.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) YP_003928321.1 COG0805 Sec-independent protein secretion pathway component TatC YP_003928322.1 COG1826 Sec-independent protein secretion pathway components YP_003928323.1 COG2255 Holliday junction resolvasome, helicase subunit YP_003928324.1 COG0413 Ketopantoate hydroxymethyltransferase YP_003928328.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003928329.1 COG0850 Septum formation inhibitor YP_003928330.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase YP_003928331.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone YP_003928332.1 COG0083 Homoserine kinase YP_003928333.1 COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination YP_003928334.1 COG0532 Translation initiation factor 2 (IF-2; GTPase) YP_003928335.1 COG0858 Ribosome-binding factor A YP_003928336.1 COG0779 Uncharacterized protein conserved in bacteria YP_003928337.1 COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases YP_003928338.1 COG1408 Predicted phosphohydrolases YP_003928339.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003928342.1 COG2404 Predicted phosphohydrolase (DHH superfamily) YP_003928343.1 COG1298 Flagellar biosynthesis pathway, component FlhA YP_003928344.1 COG0184 Ribosomal protein S15P/S13E YP_003928345.1 COG3307 Lipid A core - O-antigen ligase and related enzymes YP_003928346.1 COG0757 3-dehydroquinate dehydratase II YP_003928347.1 COG0006 Xaa-Pro aminopeptidase YP_003928348.1 COG0801 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_003928349.1 COG1419 Flagellar GTP-binding protein YP_003928350.1 COG0455 ATPases involved in chromosome partitioning YP_003928352.1 COG1191 DNA-directed RNA polymerase specialized sigma subunit YP_003928353.1 COG1868 Flagellar motor switch protein YP_003928354.1 COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation YP_003928355.1 COG2731 Beta-galactosidase, beta subunit YP_003928356.1 COG4731 Uncharacterized protein conserved in bacteria YP_003928357.1 COG0735 Fe2+/Zn2+ uptake regulation proteins YP_003928358.1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase YP_003928359.1 COG0789 Predicted transcriptional regulators YP_003928360.1 COG2214 DnaJ-class molecular chaperone YP_003928362.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_003928363.1 COG0784 FOG: CheY-like receiver YP_003928364.1 COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase YP_003928365.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_003928366.1 COG0833 Amino acid transporters YP_003928367.1 COG0558 Phosphatidylglycerophosphate synthase YP_003928369.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_003928370.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_003928371.1 COG0612 Predicted Zn-dependent peptidases YP_003928372.1 COG0167 Dihydroorotate dehydrogenase YP_003928373.1 COG0855 Polyphosphate kinase YP_003928375.1 COG0732 Restriction endonuclease S subunits YP_003928376.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_003928377.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003928378.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003928379.1 COG2604 Uncharacterized protein conserved in bacteria YP_003928382.1 COG2048 Heterodisulfide reductase, subunit B YP_003928384.1 COG1164 Oligoendopeptidase F YP_003928385.1 COG0475 Kef-type K+ transport systems, membrane components YP_003928387.1 COG0725 ABC-type molybdate transport system, periplasmic component YP_003928388.1 COG4149 ABC-type molybdate transport system, permease component YP_003928389.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component YP_003928390.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_003928392.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_003928393.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003928394.1 COG1217 Predicted membrane GTPase involved in stress response YP_003928395.1 COG0338 Site-specific DNA methylase YP_003928397.1 COG0270 Site-specific DNA methylase YP_003928398.1 COG0753 Catalase YP_003928404.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component YP_003928405.1 COG0227 Ribosomal protein L28 YP_003928407.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_003928408.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_003928410.1 COG0824 Predicted thioesterase YP_003928411.1 COG0733 Na+-dependent transporters of the SNF family YP_003928412.1 COG0733 Na+-dependent transporters of the SNF family YP_003928413.1 COG2829 Outer membrane phospholipase A YP_003928414.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) YP_003928415.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_003928418.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003928419.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_003928421.1 COG0277 FAD/FMN-containing dehydrogenases YP_003928422.1 COG0289 Dihydrodipicolinate reductase YP_003928427.1 COG3451 Type IV secretory pathway, VirB4 components YP_003928431.1 COG0249 Mismatch repair ATPase (MutS family) YP_003928440.1 COG3736 Type IV secretory pathway, component VirB8 YP_003928442.1 COG3504 Type IV secretory pathway, VirB9 components YP_003928443.1 COG2948 Type IV secretory pathway, VirB10 components YP_003928445.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_003928446.1 COG3505 Type IV secretory pathway, VirD4 components YP_003928449.1 COG0551 Zn-finger domain associated with topoisomerase type I YP_003928451.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003928452.1 COG0174 Glutamine synthetase YP_003928454.1 COG0359 Ribosomal protein L9 YP_003928455.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit YP_003928456.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit YP_003928457.1 COG1159 GTPase YP_003928458.1 COG3034 Uncharacterized protein conserved in bacteria YP_003928462.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits YP_003928465.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits YP_003928466.1 COG0796 Glutamate racemase YP_003928467.1 COG1158 Transcription termination factor YP_003928468.1 COG0254 Ribosomal protein L31 YP_003928469.1 COG0313 Predicted methyltransferases YP_003928470.1 COG0566 rRNA methylases YP_003928472.1 COG1217 Predicted membrane GTPase involved in stress response YP_003928474.1 COG0825 Acetyl-CoA carboxylase alpha subunit YP_003928475.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_003928476.1 COG0236 Acyl carrier protein YP_003928477.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_003928478.1 COG0828 Ribosomal protein S21 YP_003928481.1 COG3059 Predicted membrane protein YP_003928482.1 COG0253 Diaminopimelate epimerase YP_003928483.1 COG0628 Predicted permease YP_003928485.1 COG0012 Predicted GTPase, probable translation factor YP_003928486.1 COG0260 Leucyl aminopeptidase YP_003928487.1 COG0586 Uncharacterized membrane-associated protein YP_003928488.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins YP_003928490.1 COG0698 Ribose 5-phosphate isomerase RpiB YP_003928491.1 COG1994 Zn-dependent proteases YP_003928492.1 COG0681 Signal peptidase I YP_003928493.1 COG0190 5, 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase YP_003928494.1 COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily YP_003928496.1 COG4692 Predicted neuraminidase (sialidase) YP_003928497.1 COG0418 Dihydroorotase YP_003928498.1 COG0810 Periplasmic protein TonB, links inner and outer membranes YP_003928500.1 COG1886 Flagellar motor switch/type III secretory pathway protein YP_003928501.1 COG0177 Predicted EndoIII-related endonuclease YP_003928502.1 COG1918 Fe2+ transport system protein A YP_003928504.1 COG1559 Predicted periplasmic solute-binding protein YP_003928505.1 COG1146 Ferredoxin YP_003928506.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_003928507.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit YP_003928508.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_003928509.1 COG5610 Predicted hydrolase (HAD superfamily) YP_003928511.1 COG1495 Disulfide bond formation protein DsbB YP_003928514.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein) YP_003928515.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_003928516.1 COG0840 Methyl-accepting chemotaxis protein YP_003928517.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003928518.1 COG1344 Flagellin and related hook-associated proteins YP_003928519.1 COG2231 Uncharacterized protein related to Endonuclease III YP_003928521.1 COG0407 Uroporphyrinogen-III decarboxylase YP_003928522.1 COG1538 Outer membrane protein YP_003928523.1 COG0845 Membrane-fusion protein YP_003928524.1 COG0841 Cation/multidrug efflux pump YP_003928525.1 COG0015 Adenylosuccinate lyase YP_003928527.1 COG0842 ABC-type multidrug transport system, permease component YP_003928528.1 COG0842 ABC-type multidrug transport system, permease component YP_003928529.1 COG1131 ABC-type multidrug transport system, ATPase component YP_003928530.1 COG1131 ABC-type multidrug transport system, ATPase component YP_003928531.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain YP_003928532.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_003928533.1 COG0835 Chemotaxis signal transduction protein YP_003928534.1 COG0173 Aspartyl-tRNA synthetase YP_003928535.1 COG0563 Adenylate kinase and related kinases YP_003928536.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003928537.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003928539.1 COG0221 Inorganic pyrophosphatase YP_003928540.1 COG1193 Mismatch repair ATPase (MutS family) YP_003928542.1 COG0773 UDP-N-acetylmuramate-alanine ligase YP_003928543.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_003928544.1 COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis YP_003928545.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase YP_003928546.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003928547.1 COG1479 Uncharacterized conserved protein YP_003928548.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) YP_003928550.1 COG1740 Ni, Fe-hydrogenase I small subunit YP_003928551.1 COG0374 Ni, Fe-hydrogenase I large subunit YP_003928552.1 COG1969 Ni, Fe-hydrogenase I cytochrome b subunit YP_003928553.1 COG0680 Ni, Fe-hydrogenase maturation factor YP_003928558.1 COG0603 Predicted PP-loop superfamily ATPase YP_003928560.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase YP_003928562.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases YP_003928563.1 COG0778 Nitroreductase YP_003928564.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_003928565.1 COG0762 Predicted integral membrane protein YP_003928566.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_003928567.1 COG1210 UDP-glucose pyrophosphorylase YP_003928569.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase YP_003928570.1 COG1027 Aspartate ammonia-lyase YP_003928571.1 COG1573 Uracil-DNA glycosylase YP_003928573.1 COG0560 Phosphoserine phosphatase YP_003928574.1 COG1528 Ferritin-like protein YP_003928575.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes YP_003928576.1 COG4775 Outer membrane protein/protective antigen OMA87 YP_003928577.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes YP_003928578.1 COG0612 Predicted Zn-dependent peptidases YP_003928579.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_003928580.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_003928582.1 COG0328 Ribonuclease HI YP_003928583.1 COG0571 dsRNA-specific ribonuclease YP_003928584.1 COG0082 Chorismate synthase YP_003928586.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_003928587.1 COG0247 Fe-S oxidoreductase YP_003928588.1 COG4889 Predicted helicase YP_003928589.1 COG4889 Predicted helicase YP_003928592.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_003928597.1 COG0582 Integrase YP_003928598.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_003928599.1 COG0730 Predicted permeases YP_003928600.1 COG0673 Predicted dehydrogenases and related proteins YP_003928601.1 COG0209 Ribonucleotide reductase, alpha subunit YP_003928604.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_003928605.1 COG1338 Flagellar biosynthesis pathway, component FliP YP_003928606.1 COG4772 Outer membrane receptor for Fe3+-dicitrate YP_003928607.1 COG0370 Fe2+ transport system protein B YP_003928608.1 COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB YP_003928609.1 COG0183 Acetyl-CoA acetyltransferase YP_003928610.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit YP_003928611.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit YP_003928612.1 COG2031 Short chain fatty acids transporter YP_003928613.1 COG3528 Uncharacterized protein conserved in bacteria YP_003928614.1 COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit YP_003928615.1 COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit YP_003928616.1 COG4647 Acetone carboxylase, gamma subunit YP_003928618.1 COG0818 Diacylglycerol kinase YP_003928619.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_003928621.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_003928622.1 COG0178 Excinuclease ATPase subunit YP_003928624.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis YP_003928627.1 COG1912 Uncharacterized conserved protein YP_003928629.1 COG1896 Predicted hydrolases of HD superfamily YP_003928630.1 COG3177 Uncharacterized conserved protein YP_003928631.1 COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog YP_003928632.1 COG1137 ABC-type (unclassified) transport system, ATPase component YP_003928633.1 COG0802 Predicted ATPase or kinase YP_003928634.1 COG2812 DNA polymerase III, gamma/tau subunits YP_003928635.1 COG1279 Lysine efflux permease YP_003928639.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D YP_003928640.1 COG2704 Anaerobic C4-dicarboxylate transporter YP_003928643.1 COG0042 tRNA-dihydrouridine synthase YP_003928644.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_003928648.1 COG0699 Predicted GTPases (dynamin-related) YP_003928651.1 COG0621 2-methylthioadenine synthetase YP_003928652.1 COG2236 Predicted phosphoribosyltransferases YP_003928653.1 COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase YP_003928654.1 COG1267 Phosphatidylglycerophosphatase A and related proteins YP_003928655.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes YP_003928656.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_003928657.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase YP_003928658.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_003928659.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_003928660.1 COG0772 Bacterial cell division membrane protein YP_003928661.1 COG3597 Uncharacterized protein/domain associated with GTPases YP_003928662.1 COG3596 Predicted GTPase YP_003928663.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_003928665.1 COG0220 Predicted S-adenosylmethionine-dependent methyltransferase YP_003928666.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_003928667.1 COG2177 Cell division protein YP_003928668.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003928669.1 COG1334 Uncharacterized flagellar protein FlaG YP_003928670.1 COG1345 Flagellar capping protein YP_003928671.1 COG1516 Flagellin-specific chaperone FliS YP_003928673.1 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 YP_003928675.1 COG0388 Predicted amidohydrolase YP_003928676.1 COG2056 Predicted permease YP_003928677.1 COG0534 Na+-driven multidrug efflux pump YP_003928678.1 COG1418 Predicted HD superfamily hydrolase YP_003928679.1 COG0212 5-formyltetrahydrofolate cyclo-ligase YP_003928680.1 COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain YP_003928681.1 COG0552 Signal recognition particle GTPase YP_003928682.1 COG0727 Predicted Fe-S-cluster oxidoreductase YP_003928686.1 COG2896 Molybdenum cofactor biosynthesis enzyme YP_003928687.1 COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A YP_003928688.1 COG1377 Flagellar biosynthesis pathway, component FlhB YP_003928690.1 COG0860 N-acetylmuramoyl-L-alanine amidase YP_003928691.1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase YP_003928692.1 COG0162 Tyrosyl-tRNA synthetase YP_003928693.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_003928694.1 COG1758 DNA-directed RNA polymerase, subunit K/omega YP_003928695.1 COG0528 Uridylate kinase YP_003928696.1 COG1427 Predicted periplasmic solute-binding protein YP_003928697.1 COG1049 Aconitase B YP_003928702.1 COG2834 Outer membrane lipoprotein-sorting protein YP_003928703.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_003928704.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component YP_003928707.1 COG0270 Site-specific DNA methylase YP_003928708.1 COG2217 Cation transport ATPase YP_003928709.1 COG0606 Predicted ATPase with chaperone activity YP_003928710.1 COG0242 N-formylmethionyl-tRNA deformylase YP_003928711.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_003928712.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_003928715.1 COG0315 Molybdenum cofactor biosynthesis enzyme YP_003928716.1 COG0521 Molybdopterin biosynthesis enzymes YP_003928717.1 COG0314 Molybdopterin converting factor, large subunit YP_003928718.1 COG1977 Molybdopterin converting factor, small subunit YP_003928719.1 COG0807 GTP cyclohydrolase II YP_003928721.1 COG0108 3, 4-dihydroxy-2-butanone 4-phosphate synthase YP_003928723.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003928724.1 COG1451 Predicted metal-dependent hydrolase YP_003928725.1 COG4771 Outer membrane receptor for ferrienterochelin and colicins YP_003928726.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) YP_003928727.1 COG1580 Flagellar basal body-associated protein YP_003928728.1 COG0742 N6-adenine-specific methylase YP_003928730.1 COG1565 Uncharacterized conserved protein YP_003928731.1 COG0491 Zn-dependent hydrolases, including glyoxylases YP_003928732.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 YP_003928733.1 COG1291 Flagellar motor component YP_003928734.1 COG1360 Flagellar motor protein YP_003928736.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component YP_003928737.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components YP_003928738.1 COG0018 Arginyl-tRNA synthetase YP_003928739.1 COG0322 Nuclease subunit of the excinuclease complex YP_003928740.1 COG0460 Homoserine dehydrogenase YP_003928741.1 COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase YP_003928742.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_003928743.1 COG0492 Thioredoxin reductase YP_003928746.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003928747.1 COG0724 RNA-binding proteins (RRM domain) YP_003928748.1 COG0356 F0F1-type ATP synthase, subunit a YP_003928749.1 COG0516 IMP dehydrogenase/GMP reductase YP_003928750.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_003928751.1 COG0237 Dephospho-CoA kinase YP_003928752.1 COG0421 Spermidine synthase YP_003928754.1 COG1160 Predicted GTPases YP_003928755.1 COG0776 Bacterial nucleoid DNA-binding protein YP_003928758.1 COG3018 Uncharacterized protein conserved in bacteria YP_003928760.1 COG2067 Long-chain fatty acid transport protein YP_003928761.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases YP_003928762.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase YP_003928764.1 COG0352 Thiamine monophosphate synthase YP_003928765.1 COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase YP_003928766.1 COG2145 Hydroxyethylthiazole kinase, sugar kinase family YP_003928767.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003928768.1 COG0732 Restriction endonuclease S subunits YP_003928769.1 COG0671 Membrane-associated phospholipid phosphatase YP_003928770.1 COG2958 Uncharacterized protein conserved in bacteria YP_003928771.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_003928772.1 COG0516 IMP dehydrogenase/GMP reductase YP_003928774.1 COG0279 Phosphoheptose isomerase YP_003928775.1 COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase YP_003928776.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_003928777.1 COG0241 Histidinol phosphatase and related phosphatases YP_003928778.1 COG2836 Uncharacterized conserved protein YP_003928779.1 COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor YP_003928782.1 COG0756 dUTPase YP_003928783.1 COG0782 Transcription elongation factor YP_003928784.1 COG0763 Lipid A disaccharide synthetase YP_003928786.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) YP_003928787.1 COG1749 Flagellar hook protein FlgE YP_003928788.1 COG2134 CDP-diacylglycerol pyrophosphatase YP_003928789.1 COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism YP_003928792.1 COG0753 Catalase YP_003928793.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_003928794.1 COG0817 Holliday junction resolvasome, endonuclease subunit YP_003928795.1 COG1432 Uncharacterized conserved protein YP_003928797.1 COG0632 Holliday junction resolvasome, DNA-binding subunit YP_003928799.1 COG0728 Uncharacterized membrane protein, putative virulence factor YP_003928800.1 COG0215 Cysteinyl-tRNA synthetase YP_003928802.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003928803.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components YP_003928804.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component YP_003928805.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_003928806.1 COG1607 Acyl-CoA hydrolase YP_003928808.1 COG3041 Uncharacterized protein conserved in bacteria YP_003928810.1 COG3041 Uncharacterized protein conserved in bacteria YP_003928811.1 COG0840 Methyl-accepting chemotaxis protein YP_003928816.1 COG0409 Hydrogenase maturation factor YP_003928817.1 COG0298 Hydrogenase maturation factor YP_003928818.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase YP_003928820.1 COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain YP_003928821.1 COG0282 Acetate kinase YP_003928822.1 COG0282 Acetate kinase YP_003928825.1 COG1843 Flagellar hook capping protein YP_003928826.1 COG1749 Flagellar hook protein FlgE YP_003928828.1 COG0827 Adenine-specific DNA methylase YP_003928829.1 COG0210 Superfamily I DNA and RNA helicases YP_003928833.1 COG1190 Lysyl-tRNA synthetase (class II) YP_003928834.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_003928835.1 COG0009 Putative translation factor (SUA5) YP_003928836.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) YP_003928837.1 COG0670 Integral membrane protein, interacts with FtsH YP_003928838.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_003928841.1 COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog YP_003928842.1 COG0353 Recombinational DNA repair protein (RecF pathway) YP_003928843.1 COG0585 Uncharacterized conserved protein YP_003928844.1 COG0501 Zn-dependent protease with chaperone function YP_003928845.1 COG0302 GTP cyclohydrolase I YP_003928846.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_003928847.1 COG0496 Predicted acid phosphatase YP_003928849.1 COG0720 6-pyruvoyl-tetrahydropterin synthase YP_003928850.1 COG0602 Organic radical activating enzymes YP_003928851.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_003928853.1 COG0477 Permeases of the major facilitator superfamily YP_003928854.1 COG1479 Uncharacterized conserved protein YP_003928855.1 COG0765 ABC-type amino acid transport system, permease component YP_003928856.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_003928857.1 COG0787 Alanine racemase YP_003928858.1 COG1115 Na+/alanine symporter YP_003928859.1 COG0665 Glycine/D-amino acid oxidases (deaminating) YP_003928860.1 COG0251 Putative translation initiation inhibitor, yjgF family YP_003928861.1 COG1757 Na+/H+ antiporter YP_003928865.1 COG1576 Uncharacterized conserved protein YP_003928866.1 COG0777 Acetyl-CoA carboxylase beta subunit YP_003928867.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_003928868.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced) YP_003928870.1 COG0778 Nitroreductase YP_003928871.1 COG0682 Prolipoprotein diacylglyceryltransferase YP_003928872.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_003928873.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase YP_003928874.1 COG1579 Zn-ribbon protein, possibly nucleic acid-binding YP_003928875.1 COG0327 Uncharacterized conserved protein YP_003928876.1 COG0752 Glycyl-tRNA synthetase, alpha subunit YP_003928877.1 COG0240 Glycerol-3-phosphate dehydrogenase YP_003928880.1 COG3696 Putative silver efflux pump YP_003928881.1 COG0845 Membrane-fusion protein YP_003928883.1 COG0751 Glycyl-tRNA synthetase, beta subunit YP_003928885.1 COG0696 Phosphoglyceromutase YP_003928886.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_003928887.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_003928888.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_003928889.1 COG0849 Actin-like ATPase involved in cell division YP_003928890.1 COG0206 Cell division GTPase YP_003928895.1 COG0668 Small-conductance mechanosensitive channel YP_003928899.1 COG1479 Uncharacterized conserved protein YP_003928900.1 COG0608 Single-stranded DNA-specific exonuclease YP_003928903.1 COG1598 Uncharacterized conserved protein YP_003928905.1 COG1166 Arginine decarboxylase (spermidine biosynthesis) YP_003928906.1 COG0438 Glycosyltransferase YP_003928907.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism YP_003928908.1 COG0500 SAM-dependent methyltransferases YP_003928910.1 COG0143 Methionyl-tRNA synthetase YP_003928911.1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases YP_003928912.1 COG0668 Small-conductance mechanosensitive channel YP_003928915.1 COG0518 GMP synthase - Glutamine amidotransferase domain YP_003928918.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing YP_003928920.1 COG0520 Selenocysteine lyase YP_003928921.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_003928922.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit YP_003928923.1 COG0073 EMAP domain YP_003928924.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase YP_003928925.1 COG0761 Penicillin tolerance protein YP_003928926.1 COG0539 Ribosomal protein S1 YP_003928928.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases YP_003928929.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_003928930.1 COG0325 Predicted enzyme with a TIM-barrel fold YP_003928931.1 COG2908 Uncharacterized protein conserved in bacteria YP_003928932.1 COG0835 Chemotaxis signal transduction protein YP_003928933.1 COG0643 Chemotaxis protein histidine kinase and related kinases YP_003928934.1 COG0835 Chemotaxis signal transduction protein YP_003928935.1 COG2077 Peroxiredoxin YP_003928936.1 COG0605 Superoxide dismutase YP_003928937.1 COG0500 SAM-dependent methyltransferases YP_003928938.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase YP_003928940.1 COG0055 F0F1-type ATP synthase, beta subunit YP_003928944.1 COG0501 Zn-dependent protease with chaperone function YP_003928945.1 COG2890 Methylase of polypeptide chain release factors YP_003928946.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase YP_003928948.1 COG1333 ResB protein required for cytochrome c biosynthesis YP_003928949.1 COG2143 Thioredoxin-related protein YP_003928950.1 COG0276 Protoheme ferro-lyase (ferrochelatase) YP_003928952.1 COG1385 Uncharacterized protein conserved in bacteria YP_003928954.1 COG0717 Deoxycytidine deaminase YP_003928955.1 COG0511 Biotin carboxyl carrier protein YP_003928956.1 COG0439 Biotin carboxylase YP_003928959.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis YP_003928960.1 COG0208 Ribonucleotide reductase, beta subunit YP_003928961.1 COG2518 Protein-L-isoaspartate carboxylmethyltransferase YP_003928962.1 COG0795 Predicted permeases YP_003928963.1 COG0101 Pseudouridylate synthase YP_003928964.1 COG1087 UDP-glucose 4-epimerase YP_003928966.1 COG4221 Short-chain alcohol dehydrogenase of unknown specificity YP_003928967.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003928968.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase YP_003928969.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase YP_003928970.1 COG0364 Glucose-6-phosphate 1-dehydrogenase YP_003928971.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase YP_003928972.1 COG0837 Glucokinase YP_003928973.1 COG1064 Zn-dependent alcohol dehydrogenases YP_003928974.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003928976.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003928979.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_003928980.1 COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit YP_003928981.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit YP_003928982.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit YP_003928983.1 COG0015 Adenylosuccinate lyase YP_003928985.1 COG0556 Helicase subunit of the DNA excision repair complex YP_003928989.1 COG0790 FOG: TPR repeat, SEL1 subfamily YP_003928991.1 COG0405 Gamma-glutamyltransferase YP_003928992.1 COG1256 Flagellar hook-associated protein YP_003928994.1 COG0270 Site-specific DNA methylase YP_003928997.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 YP_003928999.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_003929000.1 COG0823 Periplasmic component of the Tol biopolymer transport system YP_003929002.1 COG0848 Biopolymer transport protein YP_003929003.1 COG0811 Biopolymer transport proteins YP_003929004.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_003929005.1 COG0055 F0F1-type ATP synthase, beta subunit YP_003929006.1 COG0224 F0F1-type ATP synthase, gamma subunit YP_003929007.1 COG0056 F0F1-type ATP synthase, alpha subunit YP_003929008.1 COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) YP_003929010.1 COG0711 F0F1-type ATP synthase, subunit b YP_003929011.1 COG1475 Predicted transcriptional regulators YP_003929012.1 COG1192 ATPases involved in chromosome partitioning YP_003929013.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase YP_003929014.1 COG0223 Methionyl-tRNA formyltransferase YP_003929015.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_003929016.1 COG4487 Uncharacterized protein conserved in bacteria YP_003929021.1 COG0335 Ribosomal protein L19 YP_003929022.1 COG0336 tRNA-(guanine-N1)-methyltransferase YP_003929023.1 COG0806 RimM protein, required for 16S rRNA processing YP_003929024.1 COG1837 Predicted RNA-binding protein (contains KH domain) YP_003929025.1 COG0228 Ribosomal protein S16 YP_003929026.1 COG0541 Signal recognition particle GTPase YP_003929027.1 COG0525 Valyl-tRNA synthetase YP_003929028.1 COG1699 Uncharacterized protein conserved in bacteria YP_003929029.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase YP_003929032.1 COG0345 Pyrroline-5-carboxylate reductase YP_003929033.1 COG2184 Protein involved in cell division YP_003929034.1 COG0319 Predicted metal-dependent hydrolase YP_003929035.1 COG0716 Flavodoxins YP_003929036.1 COG0586 Uncharacterized membrane-associated protein YP_003929037.1 COG3197 Uncharacterized protein, possibly involved in nitrogen fixation YP_003929038.1 COG0492 Thioredoxin reductase YP_003929039.1 COG0477 Permeases of the major facilitator superfamily YP_003929040.1 COG0166 Glucose-6-phosphate isomerase YP_003929043.1 COG1966 Carbon starvation protein, predicted membrane protein YP_003929044.1 COG0765 ABC-type amino acid transport system, permease component YP_003929045.1 COG0765 ABC-type amino acid transport system, permease component YP_003929046.1 COG1126 ABC-type polar amino acid transport system, ATPase component YP_003929047.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_003929049.1 COG0738 Fucose permease YP_003929050.1 COG2252 Permeases YP_003929056.1 COG0813 Purine-nucleoside phosphorylase YP_003929057.1 COG1015 Phosphopentomutase YP_003929058.1 COG1972 Nucleoside permease YP_003929060.1 COG0477 Permeases of the major facilitator superfamily YP_003929061.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_003929062.1 COG0475 Kef-type K+ transport systems, membrane components YP_003929063.1 COG0534 Na+-driven multidrug efflux pump YP_003929065.1 COG2814 Arabinose efflux permease YP_003929066.1 COG3338 Carbonic anhydrase YP_003929070.1 COG0136 Aspartate-semialdehyde dehydrogenase YP_003929071.1 COG0124 Histidyl-tRNA synthetase YP_003929072.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003929074.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) YP_003929075.1 COG0480 Translation elongation factors (GTPases) YP_003929076.1 COG0049 Ribosomal protein S7 YP_003929077.1 COG0048 Ribosomal protein S12 YP_003929078.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_003929079.1 COG0222 Ribosomal protein L7/L12 YP_003929080.1 COG0244 Ribosomal protein L10 YP_003929081.1 COG0081 Ribosomal protein L1 YP_003929082.1 COG0080 Ribosomal protein L11 YP_003929083.1 COG0250 Transcription antiterminator YP_003929085.1 COG0267 Ribosomal protein L33 YP_003929086.1 COG0050 GTPases - translation elongation factors YP_003929087.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003929088.1 COG0546 Predicted phosphatases YP_003929089.1 COG3392 Adenine-specific DNA methylase YP_003929091.1 COG1045 Serine acetyltransferase YP_003929092.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K YP_003929093.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) YP_003929094.1 COG1926 Predicted phosphoribosyltransferases YP_003929095.1 COG1452 Organic solvent tolerance protein OstA YP_003929097.1 COG0151 Phosphoribosylamine-glycine ligase YP_003929098.1 COG1131 ABC-type multidrug transport system, ATPase component YP_003929099.1 COG0020 Undecaprenyl pyrophosphate synthase YP_003929100.1 COG0277 FAD/FMN-containing dehydrogenases YP_003929101.1 COG0607 Rhodanese-related sulfurtransferase YP_003929102.1 COG1587 Uroporphyrinogen-III synthase YP_003929103.1 COG0239 Integral membrane protein possibly involved in chromosome condensation YP_003929104.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_003929105.1 COG2863 Cytochrome c553 YP_003929107.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_003929108.1 COG0527 Aspartokinases YP_003929110.1 COG0470 ATPase involved in DNA replication YP_003929111.1 COG0294 Dihydropteroate synthase and related enzymes YP_003929113.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily YP_003929115.1 COG2952 Uncharacterized protein conserved in bacteria YP_003929116.1 COG0505 Carbamoylphosphate synthase small subunit YP_003929117.1 COG0388 Predicted amidohydrolase YP_003929119.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation YP_003929120.1 COG0013 Alanyl-tRNA synthetase YP_003929121.1 COG2841 Uncharacterized protein conserved in bacteria YP_003929124.1 COG0238 Ribosomal protein S18 YP_003929125.1 COG0629 Single-stranded DNA-binding protein YP_003929126.1 COG0360 Ribosomal protein S6 YP_003929128.1 COG1466 DNA polymerase III, delta subunit YP_003929129.1 COG0557 Exoribonuclease R YP_003929130.1 COG0169 Shikimate 5-dehydrogenase YP_003929132.1 COG4174 ABC-type uncharacterized transport system, permease component YP_003929133.1 COG4166 ABC-type oligopeptide transport system, periplasmic component YP_003929134.1 COG0180 Tryptophanyl-tRNA synthetase YP_003929135.1 COG0500 SAM-dependent methyltransferases YP_003929136.1 COG1314 Preprotein translocase subunit SecG YP_003929137.1 COG0233 Ribosome recycling factor YP_003929138.1 COG0461 Orotate phosphoribosyltransferase YP_003929139.1 COG1714 Predicted membrane protein/domain YP_003929140.1 COG0846 NAD-dependent protein deacetylases, SIR2 family YP_003929141.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) YP_003929142.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases YP_003929143.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit YP_003929144.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_003929147.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_003929148.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) YP_003929149.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_003929150.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) YP_003929151.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) YP_003929152.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_003929153.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) YP_003929154.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) YP_003929155.1 COG1729 Uncharacterized protein conserved in bacteria YP_003929156.1 COG1109 Phosphomannomutase YP_003929160.1 COG4278 Uncharacterized conserved protein YP_003929162.1 COG0159 Tryptophan synthase alpha chain YP_003929163.1 COG0133 Tryptophan synthase beta chain YP_003929164.1 COG0134 Indole-3-glycerol phosphate synthase YP_003929165.1 COG0547 Anthranilate phosphoribosyltransferase YP_003929166.1 COG0512 Anthranilate/para-aminobenzoate synthases component II YP_003929167.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_003929168.1 COG0859 ADP-heptose:LPS heptosyltransferase YP_003929169.1 COG2503 Predicted secreted acid phosphatase YP_003929170.1 COG2353 Uncharacterized conserved protein YP_003929171.1 COG0819 Putative transcription activator YP_003929174.1 COG3201 Nicotinamide mononucleotide transporter YP_003929175.1 COG1564 Thiamine pyrophosphokinase YP_003929177.1 COG0203 Ribosomal protein L17 YP_003929178.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_003929179.1 COG0522 Ribosomal protein S4 and related proteins YP_003929180.1 COG0100 Ribosomal protein S11 YP_003929181.1 COG0099 Ribosomal protein S13 YP_003929182.1 COG0257 Ribosomal protein L36 YP_003929183.1 COG0361 Translation initiation factor 1 (IF-1) YP_003929184.1 COG0024 Methionine aminopeptidase YP_003929185.1 COG0201 Preprotein translocase subunit SecY YP_003929186.1 COG0200 Ribosomal protein L15 YP_003929187.1 COG0098 Ribosomal protein S5 YP_003929188.1 COG0256 Ribosomal protein L18 YP_003929189.1 COG0097 Ribosomal protein L6P/L9E YP_003929190.1 COG0096 Ribosomal protein S8 YP_003929191.1 COG0199 Ribosomal protein S14 YP_003929192.1 COG0094 Ribosomal protein L5 YP_003929193.1 COG0198 Ribosomal protein L24 YP_003929194.1 COG0093 Ribosomal protein L14 YP_003929195.1 COG0186 Ribosomal protein S17 YP_003929196.1 COG0255 Ribosomal protein L29 YP_003929197.1 COG0197 Ribosomal protein L16/L10E YP_003929198.1 COG0092 Ribosomal protein S3 YP_003929199.1 COG0091 Ribosomal protein L22 YP_003929200.1 COG0185 Ribosomal protein S19 YP_003929201.1 COG0090 Ribosomal protein L2 YP_003929202.1 COG0089 Ribosomal protein L23 YP_003929203.1 COG0088 Ribosomal protein L4 YP_003929204.1 COG0087 Ribosomal protein L3 YP_003929205.1 COG0051 Ribosomal protein S10 YP_003929206.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components YP_003929208.1 COG0164 Ribonuclease HII YP_003929210.1 COG0114 Fumarase YP_003929213.1 COG0845 Membrane-fusion protein YP_003929214.1 COG3696 Putative silver efflux pump YP_003929215.1 COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) YP_003929216.1 COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) YP_003929217.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_003929219.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_003929220.1 COG2214 DnaJ-class molecular chaperone YP_003929221.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase YP_003929222.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain YP_003929223.1 COG0811 Biopolymer transport proteins YP_003929224.1 COG0848 Biopolymer transport protein YP_003929225.1 COG0810 Periplasmic protein TonB, links inner and outer membranes YP_003929227.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance YP_003929228.1 COG0598 Mg2+ and Co2+ transporters YP_003929229.1 COG0126 3-phosphoglycerate kinase YP_003929230.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_003929231.1 COG0692 Uracil DNA glycosylase YP_003929232.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_003929234.1 COG0793 Periplasmic protease YP_003929235.1 COG4889 Predicted helicase YP_003929236.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_003929237.1 COG0157 Nicotinate-nucleotide pyrophosphorylase YP_003929238.1 COG0379 Quinolinate synthase YP_003929239.1 COG0688 Phosphatidylserine decarboxylase YP_003929242.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases YP_003929243.1 COG0658 Predicted membrane metal-binding protein YP_003929244.1 COG0305 Replicative DNA helicase YP_003929245.1 COG0062 Uncharacterized conserved protein YP_003929246.1 COG0642 Signal transduction histidine kinase YP_003929247.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003929248.1 COG0863 DNA modification methylase YP_003929250.1 COG0582 Integrase YP_003929259.1 COG0827 Adenine-specific DNA methylase YP_003929261.1 COG0550 Topoisomerase IA YP_003929264.1 COG0087 Ribosomal protein L3 YP_003929266.1 COG1192 ATPases involved in chromosome partitioning YP_003929277.1 COG3177 Uncharacterized conserved protein YP_003929278.1 COG0582 Integrase YP_003929279.1 COG3843 Type IV secretory pathway, VirD2 components (relaxase) YP_003929280.1 COG3505 Type IV secretory pathway, VirD4 components YP_003929283.1 COG0863 DNA modification methylase YP_003929284.1 COG2189 Adenine specific DNA methylase Mod YP_003929285.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003929286.1 COG1792 Cell shape-determining protein YP_003929287.1 COG1077 Actin-like ATPase involved in cell morphogenesis YP_003929288.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_003929289.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_003929290.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_003929291.1 COG1699 Uncharacterized protein conserved in bacteria YP_003929293.1 COG4105 DNA uptake lipoprotein YP_003929294.1 COG0466 ATP-dependent Lon protease, bacterial type YP_003929295.1 COG0287 Prephenate dehydrogenase YP_003929296.1 COG1864 DNA/RNA endonuclease G, NUC1 YP_003929297.1 COG2189 Adenine specific DNA methylase Mod YP_003929298.1 COG3421 Uncharacterized protein conserved in bacteria YP_003929299.1 COG0502 Biotin synthase and related enzymes YP_003929300.1 COG1295 Predicted membrane protein YP_003929301.1 COG3676 Transposase and inactivated derivatives YP_003929307.1 COG0780 Enzyme related to GTP cyclohydrolase I YP_003929308.1 COG0799 Uncharacterized homolog of plant Iojap protein YP_003929309.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003929310.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases YP_003929311.1 COG0812 UDP-N-acetylmuramate dehydrogenase YP_003929312.1 COG1987 Flagellar biosynthesis pathway, component FliQ YP_003929313.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase YP_003929314.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_003929315.1 COG0060 Isoleucyl-tRNA synthetase YP_003929316.1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) YP_003929319.1 COG0820 Predicted Fe-S-cluster redox enzyme YP_003929320.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation YP_003929321.1 COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain YP_003929322.1 COG0030 Dimethyladenosine transferase (rRNA methylation) YP_003929330.1 COG0788 Formyltetrahydrofolate hydrolase YP_003929331.1 COG0616 Periplasmic serine proteases (ClpP class) YP_003929337.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family YP_003929338.1 COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) YP_003929339.1 COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase YP_003929340.1 COG0691 tmRNA-binding protein YP_003929341.1 COG0811 Biopolymer transport proteins YP_003929342.1 COG0848 Biopolymer transport protein YP_003929343.1 COG0230 Ribosomal protein L34 YP_003929344.1 COG0594 RNase P protein component YP_003929345.1 COG0759 Uncharacterized conserved protein YP_003929346.1 COG0706 Preprotein translocase subunit YidC YP_003929347.1 COG1315 Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain YP_003929348.1 COG0486 Predicted GTPase YP_003929352.1 COG0481 Membrane GTPase LepA YP_003929355.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_003929356.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases YP_003929357.1 COG0587 DNA polymerase III, alpha subunit YP_003929358.1 COG1858 Cytochrome c peroxidase YP_003929359.1 COG3440 Predicted restriction endonuclease YP_003929360.1 COG0270 Site-specific DNA methylase YP_003929361.1 COG0270 Site-specific DNA methylase YP_003929362.1 COG3636 Predicted transcriptional regulator YP_003929363.1 COG3187 Heat shock protein YP_003929365.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_003929366.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_003929367.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component YP_003929370.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase YP_003929372.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_003929374.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_003929376.1 COG0125 Thymidylate kinase YP_003929377.1 COG0669 Phosphopantetheine adenylyltransferase YP_003929378.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_003929380.1 COG1261 Flagellar basal body P-ring biosynthesis protein YP_003929381.1 COG0210 Superfamily I DNA and RNA helicases YP_003929382.1 COG0457 FOG: TPR repeat YP_003929383.1 COG0172 Seryl-tRNA synthetase YP_003929384.1 COG0388 Predicted amidohydrolase YP_003929385.1 COG1722 Exonuclease VII small subunit YP_003929386.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis YP_003929387.1 COG1981 Predicted membrane protein YP_003929388.1 COG1739 Uncharacterized conserved protein YP_003929389.1 COG0842 ABC-type multidrug transport system, permease component YP_003929390.1 COG0842 ABC-type multidrug transport system, permease component YP_003929391.1 COG0845 Membrane-fusion protein YP_003929392.1 COG1538 Outer membrane protein YP_003929393.1 COG1253 Hemolysins and related proteins containing CBS domains YP_003929394.1 COG0306 Phosphate/sulphate permeases YP_003929395.1 COG0694 Thioredoxin-like proteins and domains YP_003929397.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase YP_003929398.1 COG0176 Transaldolase YP_003929399.1 COG1825 Ribosomal protein L25 (general stress protein Ctc) YP_003929400.1 COG0193 Peptidyl-tRNA hydrolase YP_003929401.1 COG0795 Predicted permeases YP_003929402.1 COG3392 Adenine-specific DNA methylase YP_003929403.1 COG0338 Site-specific DNA methylase YP_003929404.1 COG0051 Ribosomal protein S10 YP_003929406.1 COG3399 Uncharacterized protein conserved in bacteria YP_003929407.1 COG2217 Cation transport ATPase YP_003929408.1 COG4123 Predicted O-methyltransferase YP_003929409.1 COG0117 Pyrimidine deaminase YP_003929410.1 COG0786 Na+/glutamate symporter YP_003929411.1 COG1748 Saccharopine dehydrogenase and related proteins YP_003929412.1 COG0348 Polyferredoxin YP_003929413.1 COG0344 Predicted membrane protein YP_003929414.1 COG1539 Dihydroneopterin aldolase YP_003929416.1 COG1629 Outer membrane receptor proteins, mostly Fe transport YP_003929417.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] YP_003929418.1 COG0195 Transcription elongation factor YP_003929420.1 COG3600 Uncharacterized phage-associated protein YP_003929421.1 COG3344 Retron-type reverse transcriptase YP_003929423.1 COG1002 Type II restriction enzyme, methylase subunits YP_003929424.1 COG2189 Adenine specific DNA methylase Mod YP_003929425.1 COG2189 Adenine specific DNA methylase Mod YP_003929426.1 COG1200 RecG-like helicase YP_003929429.1 COG0708 Exonuclease III YP_003929431.1 COG0593 ATPase involved in DNA replication initiation YP_003929432.1 COG0813 Purine-nucleoside phosphorylase YP_003929434.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains YP_003929435.1 COG1351 Predicted alternative thymidylate synthase YP_003929437.1 COG0732 Restriction endonuclease S subunits YP_003929438.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_003929439.1 COG1451 Predicted metal-dependent hydrolase YP_003929440.1 COG4772 Outer membrane receptor for Fe3+-dicitrate YP_003929441.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family YP_003929442.1 COG0686 Alanine dehydrogenase YP_003929443.1 COG1479 Uncharacterized conserved protein YP_003929446.1 COG0061 Predicted sugar kinase YP_003929447.1 COG0497 ATPase involved in DNA repair YP_003929448.1 COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP YP_003929452.1 COG0675 Transposase and inactivated derivatives YP_003929453.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_003929454.1 COG0036 Pentose-5-phosphate-3-epimerase YP_003929455.1 COG0158 Fructose-1, 6-bisphosphatase YP_003929457.1 COG0827 Adenine-specific DNA methylase YP_003929458.1 COG2857 Cytochrome c1 YP_003929459.1 COG1290 Cytochrome b subunit of the bc complex YP_003929460.1 COG0723 Rieske Fe-S protein YP_003929461.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_003929462.1 COG1664 Integral membrane protein CcmA involved in cell shape determination YP_003929463.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003929464.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003929465.1 COG0285 Folylpolyglutamate synthase YP_003929467.1 COG0495 Leucyl-tRNA synthetase YP_003929469.1 COG0341 Preprotein translocase subunit SecF YP_003929470.1 COG0342 Preprotein translocase subunit SecD YP_003929471.1 COG1862 Preprotein translocase subunit YajC YP_003929472.1 COG3004 Na+/H+ antiporter YP_003929473.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) YP_003929474.1 COG0052 Ribosomal protein S2 YP_003929475.1 COG0264 Translation elongation factor Ts YP_003929476.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_003929477.1 COG1677 Flagellar hook-basal body protein YP_003929478.1 COG1558 Flagellar basal body rod protein YP_003929479.1 COG1815 Flagellar basal body protein YP_003929480.1 COG0772 Bacterial cell division membrane protein YP_003929481.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component YP_003929482.1 COG0450 Peroxiredoxin YP_003929483.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen YP_003929485.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_003929487.1 COG0218 Predicted GTPase YP_003929488.1 COG1934 Uncharacterized protein conserved in bacteria YP_003929490.1 COG1778 Low specificity phosphatase (HAD superfamily) YP_003929491.1 COG0797 Lipoproteins YP_003929492.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_003929493.1 COG0084 Mg-dependent DNase YP_003929494.1 COG0307 Riboflavin synthase alpha chain YP_003929495.1 COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB YP_003929496.1 COG1135 ABC-type metal ion transport system, ATPase component YP_003929497.1 COG2011 ABC-type metal ion transport system, permease component YP_003929499.1 COG0671 Membrane-associated phospholipid phosphatase YP_003929500.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_003929501.1 COG0854 Pyridoxal phosphate biosynthesis protein YP_003929502.1 COG1995 Pyridoxal phosphate biosynthesis protein YP_003929503.1 COG0533 Metal-dependent proteases with possible chaperone activity YP_003929505.1 COG4786 Flagellar basal body rod protein YP_003929508.1 COG4735 Uncharacterized protein conserved in bacteria YP_003929509.1 COG4735 Uncharacterized protein conserved in bacteria YP_003929510.1 COG4735 Uncharacterized protein conserved in bacteria