-- dump date 20140619_114953 -- class Genbank::CDS -- table cds_note -- id note YP_001542781.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001542782.1 KEGG: mxa:MXAN_1636 hypothetical protein YP_001542783.1 PFAM: peptidase M28; KEGG: bvu:BVU_1317 leucine aminopeptidase precursor YP_001542784.1 KEGG: cya:CYA_2514 peptidase, M20D family; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001542785.1 KEGG: rrs:RoseRS_0657 tetratricopeptide TPR_2 repeat protein YP_001542786.1 PFAM: Colicin V production protein YP_001542787.1 KEGG: rrs:RoseRS_0381 hypothetical protein YP_001542788.1 PFAM: Appr-1-p processing domain protein; KEGG: sen:SACE_0151 phage tail assembly-like protein YP_001542789.1 PFAM: thioesterase superfamily protein; KEGG: rxy:Rxyl_2334 phenylacetic acid degradation-related protein YP_001542790.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rca:Rcas_2986 pyrimidine 5'-nucleotidase YP_001542792.1 PFAM: WD40 domain protein beta Propeller; KEGG: rrs:RoseRS_2358 hypothetical protein YP_001542793.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rrs:RoseRS_0406 diaminopimelate decarboxylase YP_001542794.1 KEGG: rrs:RoseRS_0288 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein YP_001542795.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: csc:Csac_0883 RNA polymerase, sigma 70 subunit, RpoD family YP_001542796.1 PFAM: Integral membrane protein TerC; KEGG: gvi:glr4409 transmembrane transport protein YP_001542797.1 KEGG: bce:BC2165 hypothetical membrane spanning protein YP_001542798.1 PFAM: regulatory protein TetR; KEGG: gvi:glr1417 TetR family transcriptional regulatory protein YP_001542799.1 PFAM: glycoside hydrolase 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase YP_001542800.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: kpn:KPN_00374 exodeoxyribonuclease VII small subunit YP_001542801.1 PFAM: chalcone and stilbene synthase domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: gtn:GTNG_1402 naringenin-chalcone synthase YP_001542803.1 PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_0666 protein kinase YP_001542804.1 PFAM: amidohydrolase; KEGG: ttj:TTHA0872 amidohydrolase YP_001542805.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: rca:Rcas_3336 thioredoxin YP_001542806.1 PFAM: MbtH domain protein; KEGG: mxa:MXAN_3118 MbtH-like domain protein YP_001542808.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rca:Rcas_1200 ATPase AAA-2 domain protein YP_001542809.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rca:Rcas_2836 chaperone DnaJ domain protein YP_001542810.1 KEGG: gvi:glr3834 hypothetical protein YP_001542811.1 KEGG: dge:Dgeo_2490 hypothetical protein YP_001542812.1 PFAM: Catalase domain protein; KEGG: gbe:GbCGDNIH1_1969 catalase YP_001542813.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rba:RB2983 hydrogen peroxide-inducible genes activator YP_001542814.1 PFAM: protein of unknown function DUF541; KEGG: hch:HCH_05424 hypothetical protein YP_001542815.1 PFAM: CBS domain containing protein; KEGG: rca:Rcas_2009 CBS domain containing protein YP_001542816.1 PFAM: protein of unknown function DUF820; KEGG: rba:RB8456 hypothetical protein YP_001542817.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rrs:RoseRS_1551 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_001542818.1 catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_001542819.1 PFAM: SNARE associated Golgi protein; KEGG: rca:Rcas_0729 SNARE associated Golgi protein YP_001542821.1 PFAM: Phosphoglycerate mutase; KEGG: fnu:FN0808 phosphoglycerate mutase YP_001542822.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_0424 glycosyl transferase, group 1 YP_001542823.1 KEGG: gsu:GSU0621 hypothetical protein YP_001542824.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2662 adenylyl cyclase class-3/4/guanylyl cyclase YP_001542825.1 KEGG: pfa:PFB0285c hypothetical protein YP_001542826.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rca:Rcas_0654 ATPase associated with various cellular activities AAA_5 YP_001542827.1 PFAM: VWA containing CoxE family protein; KEGG: rca:Rcas_0655 VWA containing CoxE family protein YP_001542828.1 PFAM: beta-lactamase domain protein; KEGG: ter:Tery_1865 beta-lactamase-like YP_001542829.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: mav:MAV_0092 transcriptional regulator, Crp/Fnr family protein YP_001542831.1 KEGG: rrs:RoseRS_0246 hypothetical protein YP_001542832.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0787 anti-sigma-factor antagonist YP_001542833.1 PFAM: aminotransferase class I and II; KEGG: swi:Swit_2419 aminotransferase, class I and II YP_001542834.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mxa:MXAN_0706 sensory box histidine kinase YP_001542836.1 PFAM: PGAP1 family protein; KEGG: rfr:Rfer_3545 PGAP1-like YP_001542837.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: sat:SYN_02739 ADP-ribosylglycohydrolase YP_001542838.1 KEGG: btk:BT9727_1164 hypothetical protein YP_001542839.1 PFAM: cyclase; KEGG: syn:slr2121 hypothetical protein YP_001542840.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: cya:CYA_1749 carbamoyl-phosphate synthase, large subunit YP_001542841.1 KEGG: rrs:RoseRS_4539 hypothetical protein YP_001542842.1 KEGG: ana:all0736 hypothetical protein YP_001542843.1 KEGG: rca:Rcas_2978 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding class 1 YP_001542844.1 KEGG: rrs:RoseRS_2654 hypothetical protein YP_001542845.1 PFAM: O-antigen polymerase; KEGG: rca:Rcas_2722 O-antigen polymerase YP_001542847.1 PFAM: protein of unknown function DUF574; KEGG: rrs:RoseRS_1762 protein of unknown function DUF574 YP_001542848.1 KEGG: rca:Rcas_3877 hypothetical protein YP_001542849.1 KEGG: rrs:RoseRS_3415 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_001542850.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_2694 PAS/PAC sensor protein YP_001542851.1 KEGG: mgi:Mflv_1340 conserved transmembrane protein YP_001542852.1 KEGG: rca:Rcas_2512 hypothetical protein YP_001542853.1 KEGG: rca:Rcas_2511 hypothetical protein YP_001542854.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rrs:RoseRS_1835 ATPase associated with various cellular activities, AAA_3 YP_001542855.1 PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_1836 protein of unknown function DUF58 YP_001542856.1 PFAM: metallophosphoesterase; KEGG: sat:SYN_01619 phosphoesterase YP_001542857.1 KEGG: sco:SCO4758 hypothetical protein YP_001542858.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aba:Acid345_2686 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001542859.1 KEGG: rrs:RoseRS_3175 hypothetical protein YP_001542860.1 PFAM: polysaccharide deacetylase; KEGG: amt:Amet_1614 polysaccharide deacetylase YP_001542861.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_3973 PBS lyase heat domain protein repeat-containing protein YP_001542862.1 PFAM: LmbE family protein; KEGG: rrs:RoseRS_3974 LmbE family protein YP_001542863.1 PFAM: Methicillin resistance protein; KEGG: rca:Rcas_1415 methicillin resistance protein YP_001542864.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rrs:RoseRS_0794 UDP-N-acetylmuramyl-tripeptide synthetase YP_001542865.1 KEGG: rca:Rcas_3218 hypothetical protein YP_001542868.1 TIGRFAM: primosome, DnaD subunit; KEGG: rrs:RoseRS_1148 primosome, DnaD subunit YP_001542869.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1147 IstB domain protein ATP-binding protein YP_001542870.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3987 tetratricopeptide TPR_2 repeat protein YP_001542871.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3375 transcriptional regulator, AraC family YP_001542872.1 PFAM: AzlC family protein; KEGG: hma:rrnAC1920 branched-chain amino acid transport protein AzlC YP_001542873.1 PFAM: branched-chain amino acid transport; KEGG: pla:Plav_1961 branched-chain amino acid transport YP_001542874.1 PFAM: cell wall hydrolase/autolysin; KEGG: bha:BH3665 N-acetylmuramoyl-L-alanine amidase, major autolysin YP_001542875.1 PFAM: response regulator receiver; KEGG: lic:LIC10332 response regulator YP_001542876.1 TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: glycoside hydrolase 13 domain protein; alpha amylase catalytic region; KEGG: art:Arth_3767 alpha-1,6-glucosidases, pullulanase-type YP_001542877.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: rca:Rcas_3949 glutamyl-tRNA(Gln) amidotransferase, B subunit YP_001542878.1 KEGG: smu:SMU.162c hypothetical protein YP_001542879.1 KEGG: rci:LRC48 hypothetical protein YP_001542880.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mma:MM_3000 DNA repair helicase YP_001542881.1 KEGG: afw:Anae109_0459 PHP domain protein YP_001542883.1 PFAM: WD-40 repeat protein; SMART: AAA ATPase; KEGG: gvi:gll4356 WD-repeat protein YP_001542884.1 TIGRFAM: Cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; KEGG: rrs:RoseRS_2263 cytochrome c oxidase, subunit II YP_001542885.1 KEGG: rca:Rcas_3557 cytochrome c oxidase subunit I type; TIGRFAM: Cytochrome c oxidase subunit I type; PFAM: cytochrome c oxidase subunit I YP_001542886.1 PFAM: cytochrome c oxidase subunit III; KEGG: rca:Rcas_3556 cytochrome c oxidase subunit III YP_001542887.1 KEGG: rca:Rcas_3555 caa(3)-type oxidase, subunit IV YP_001542888.1 KEGG: rca:Rcas_3554 membrane protein-like protein YP_001542889.1 KEGG: rca:Rcas_0080 hypothetical protein YP_001542890.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_1224 methyltransferase type 11 YP_001542891.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_2311 GCN5-related N-acetyltransferase YP_001542892.1 PFAM: regulatory protein ArsR; KEGG: rca:Rcas_2310 transcriptional regulator, ArsR family YP_001542893.1 PFAM: regulatory protein ArsR; KEGG: gur:Gura_3531 regulatory protein, ArsR YP_001542894.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rca:Rcas_1939 DNA methylase N-4/N-6 domain protein YP_001542895.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: rrs:RoseRS_1549 carboxypeptidase Taq YP_001542896.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_1485 anti-sigma-factor antagonist YP_001542897.1 PFAM: aminotransferase class I and II; KEGG: rrs:RoseRS_1560 aminotransferase, class I and II YP_001542898.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001542899.1 PFAM: ribosomal protein L33; KEGG: sha:SH1572 50S ribosomal protein L33 YP_001542900.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: rca:Rcas_4322 preprotein translocase, SecE subunit YP_001542901.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: rca:Rcas_4321 NusG antitermination factor YP_001542902.1 PFAM: ribosomal protein L11; KEGG: rrs:RoseRS_3326 ribosomal protein L11 YP_001542903.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001542904.1 PFAM: amidinotransferase; KEGG: sus:Acid_1735 dimethylargininase YP_001542905.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: dsy:DSY4842 hypothetical protein YP_001542906.1 KEGG: rrs:RoseRS_0210 hypothetical protein YP_001542908.1 PFAM: diacylglycerol kinase catalytic region; KEGG: oih:OB0767 hypothetical protein YP_001542910.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: rca:Rcas_0300 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_001542911.1 PFAM: GTP cyclohydrolase I; KEGG: rrs:RoseRS_0705 GTP cyclohydrolase I YP_001542912.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rca:Rcas_0302 short-chain dehydrogenase/reductase SDR YP_001542913.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: rxy:Rxyl_2072 isocitrate/isopropylmalate dehydrogenase YP_001542915.1 KEGG: ecs:pO157p35 similar to SwissProt accession number P19593; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); HNH endonuclease; Group II intron maturase-specific domain protein; SMART: HNH nuclease YP_001542916.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ani:AN9426.2 hypothetical protein Pfam: PNP_UDP_1 NB-ARC NACHT DegS Laminin_I TPR_1 TPR_2 TPR_4 TPR_3 YP_001542917.1 KEGG: nca:Noca_3677 hypothetical protein YP_001542918.1 KEGG: rca:Rcas_1314 hypothetical protein YP_001542919.1 PFAM: aminotransferase class-III; KEGG: rrs:RoseRS_1738 aminotransferase class-III YP_001542920.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001542921.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: cyb:CYB_1224 ribosomal protein L7/L12 YP_001542923.1 KEGG: rrs:RoseRS_3963 PfkB domain protein YP_001542924.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: rrs:RoseRS_2960 endoribonuclease L-PSP YP_001542925.1 PFAM: protein of unknown function UPF0102; KEGG: rrs:RoseRS_1723 protein of unknown function UPF0102 YP_001542926.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001542927.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: rca:Rcas_3361 acetylglutamate kinase YP_001542928.1 PFAM: PfkB domain protein; KEGG: sma:SAV1511 sugar kinase YP_001542929.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO4373 mut-like protein YP_001542930.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bfr:BF0634 hypothetical protein YP_001542931.1 KEGG: rca:Rcas_1071 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_001542933.1 KEGG: ppd:Ppro_2145 molecular chaperone-like protein YP_001542934.1 PFAM: histone deacetylase superfamily; KEGG: rrs:RoseRS_3190 histone deacetylase superfamily YP_001542935.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001542936.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001542937.1 KEGG: rrs:RoseRS_3193 hypothetical protein YP_001542938.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001542939.1 PFAM: thiamineS protein; KEGG: olu:OSTLU_94198 predicted protein YP_001542940.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: rca:Rcas_2923 molybdopterin converting factor, subunit 1 YP_001542941.1 KEGG: rca:Rcas_3939 alpha-2-macroglobulin domain protein YP_001542942.1 KEGG: sth:STH1459 hypothetical protein YP_001542943.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0024 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001542944.1 KEGG: rca:Rcas_0025 transmembrane anti-sigma factor YP_001542945.1 KEGG: rca:Rcas_3242 phosphoribosyltransferase YP_001542946.1 KEGG: amt:Amet_3960 hypothetical protein YP_001542947.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_00228 histone acetyltransferase HPA2/related acetyltransferase YP_001542949.1 KEGG: pfl:PFL_3331 ADP-ribose pyrophosphatase YP_001542950.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mgr:MGG_02101 hypothetical protein YP_001542951.1 KEGG: rrs:RoseRS_3127 hypothetical protein YP_001542952.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dre:692295 zgc:136363 Pfam: Hydrolase YP_001542953.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rca:Rcas_0253 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_001542954.1 PFAM: alpha/beta hydrolase fold; cyclic nucleotide-binding; KEGG: rrs:RoseRS_1786 cyclic nucleotide-binding protein YP_001542955.1 KEGG: rca:Rcas_0147 hypothetical protein YP_001542957.1 KEGG: rrs:RoseRS_2015 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001542958.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rrs:RoseRS_1054 lysine exporter protein (LysE/YggA) YP_001542959.1 PFAM: PspA/IM30 family protein; KEGG: rca:Rcas_0896 phage shock protein A, PspA YP_001542960.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001542961.1 KEGG: rrs:RoseRS_2749 tetratricopeptide TPR_2 repeat protein YP_001542962.1 KEGG: rca:Rcas_1834 tetratricopeptide TPR_2 repeat protein YP_001542963.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001542964.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001542965.1 PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; KEGG: rca:Rcas_2018 PilT protein domain protein YP_001542966.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: rrs:RoseRS_2445 D-tyrosyl-tRNA(Tyr) deacylase YP_001542968.1 KEGG: rca:Rcas_2221 hypothetical protein YP_001542969.1 KEGG: rca:Rcas_2220 hypothetical protein YP_001542970.1 KEGG: rca:Rcas_2219 FHA domain containing protein YP_001542971.1 KEGG: rca:Rcas_2218 hypothetical protein YP_001542972.1 KEGG: rrs:RoseRS_2439 hypothetical protein YP_001542973.1 TIGRFAM: conserved repeat domain; LPXTG-motif cell wall anchor domain; PFAM: protein of unknown function DUF11; KEGG: fjo:Fjoh_3952 conserved repeat domain YP_001542974.1 KEGG: rrs:RoseRS_4270 non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_001542975.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: art:Arth_3208 hypothetical protein YP_001542976.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: gka:GK3163 polysaccharide biosynthesis YP_001542977.1 KEGG: rrs:RoseRS_0305 hypothetical protein YP_001542979.1 PFAM: DinB family protein YP_001542980.1 KEGG: pol:Bpro_1650 hypothetical protein YP_001542981.1 KEGG: dge:Dgeo_2272 transposase, IS891/IS1136/IS1341; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_001542983.1 KEGG: chu:CHU_0224 hypothetical protein YP_001542984.1 PFAM: regulatory protein TetR; KEGG: gsu:GSU0205 transcriptional regulator, TetR family YP_001542985.1 PFAM: protein of unknown function UPF0027; KEGG: pca:Pcar_2835 hypothetical protein YP_001542986.1 PFAM: response regulator receiver; KEGG: rca:Rcas_0674 response regulator receiver protein YP_001542987.1 KEGG: lbl:LBL_2953 hypothetical protein YP_001542988.1 PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_3728 peptidase C60, sortase A and B YP_001542990.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: gvi:glr4164 hypothetical protein YP_001542991.1 KEGG: rca:Rcas_2083 hypothetical protein YP_001542992.1 KEGG: rca:Rcas_1227 hypothetical protein YP_001542994.1 KEGG: saz:Sama_0028 conserved hypothetical amidohydrolase YP_001542997.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: tde:TDE0205 adenylate/guanylate cyclase catalytic domain protein YP_001542998.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2270 ABC transporter related YP_001542999.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_3549 ABC transporter related YP_001543000.1 KEGG: sus:Acid_5840 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_001543001.1 KEGG: sat:SYN_00188 TolB protein YP_001543002.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001543003.1 KEGG: rca:Rcas_0830 hypothetical protein YP_001543004.1 PFAM: ribonuclease HII/HIII; KEGG: rrs:RoseRS_2783 ribonuclease H YP_001543005.1 PFAM: Methyltransferase type 11; KEGG: rrs:RoseRS_2782 methyltransferase type 11 YP_001543006.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001543007.1 KEGG: btl:BALH_2625 hypothetical protein YP_001543009.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ava:Ava_1430 FMN-dependent alpha-hydroxy acid dehydrogenase YP_001543011.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ace:Acel_0943 ABC transporter related YP_001543012.1 PFAM: PspA/IM30 family protein; KEGG: rca:Rcas_0896 phage shock protein A, PspA YP_001543013.1 PFAM: Peptidoglycan-binding LysM; KEGG: dsy:DSY1185 hypothetical protein YP_001543014.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2548 glycosyl transferase, group 1 YP_001543015.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_0336 serine/threonine protein kinase YP_001543016.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_0336 serine/threonine protein kinase YP_001543017.1 TIGRFAM: phosphoheptose isomerase; KEGG: rru:Rru_A2605 phosphoheptose isomerase YP_001543018.1 TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pca:Pcar_1283 hydrolase, HAD-superfamily YP_001543019.1 PFAM: protein of unknown function DUF74; KEGG: sus:Acid_4599 protein of unknown function DUF74 YP_001543021.1 KEGG: lic:LIC10776 hypothetical protein YP_001543022.1 KEGG: rca:Rcas_1597 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_001543023.1 KEGG: bat:BAS2504 intein homing endonuclease-related protein YP_001543024.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001543025.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: rrs:RoseRS_3756 riboflavin biosynthesis protein RibF YP_001543026.1 KEGG: ava:Ava_3982 hypothetical protein YP_001543027.1 PFAM: regulatory protein MerR; KEGG: ana:all0345 transcriptional regulator YP_001543028.1 PFAM: GCN5-related N-acetyltransferase YP_001543029.1 PFAM: von Willebrand factor type A; protein of unknown function DUF1355; KEGG: rrs:RoseRS_3544 von Willebrand factor, type A YP_001543030.1 TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rca:Rcas_3820 hypothetical protein YP_001543032.1 KEGG: rrs:RoseRS_1889 protein of unknown function DUF58 YP_001543033.1 PFAM: DSBA oxidoreductase; KEGG: rca:Rcas_3717 DsbA oxidoreductase YP_001543034.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rca:Rcas_3818 ATPase associated with various cellular activities AAA_3 YP_001543035.1 KEGG: rca:Rcas_3816 hypothetical protein YP_001543036.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sye:Syncc9902_1524 peptidylprolyl isomerase YP_001543037.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tel:tlr0276 sulfate transport system permease YP_001543038.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro01272 ABC sulfate/thiosulfate porter, permease component YP_001543039.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: syf:Synpcc7942_1681 thiosulphate-binding protein YP_001543040.1 PFAM: ABC transporter related; UspA domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ava:Ava_1495 sulphate transport system permease 1 YP_001543041.1 TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO5646 solute binding lipoprotein YP_001543042.1 KEGG: rrs:RoseRS_2993 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001543043.1 TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase-cyclodeaminase; Formiminotransferase domain protein; Formiminotransferase domain protein; KEGG: aba:Acid345_2130 formiminotransferase-like YP_001543044.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: deb:DehaBAV1_0314 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_001543045.1 KEGG: rrs:RoseRS_4097 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001543046.1 PFAM: shikimate kinase; 3-dehydroquinate synthase; KEGG: rrs:RoseRS_4545 3-dehydroquinate synthase YP_001543047.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: rrs:RoseRS_3525 modification methylase, HemK family YP_001543048.1 PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein; KEGG: rrs:RoseRS_4116 allergen V5/TPX-1 family protein YP_001543049.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001543050.1 PFAM: regulatory protein MarR; KEGG: sme:SMc00380 transcription regulator protein YP_001543052.1 PFAM: protein of unknown function DUF1452; KEGG: pol:Bpro_2306 protein of unknown function DUF1452 YP_001543053.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: rfr:Rfer_1963 protein of unknown function DUF125, transmembrane YP_001543055.1 KEGG: reh:H16_B1269 hypothetical protein YP_001543056.1 PFAM: XisH protein YP_001543057.1 PFAM: response regulator receiver; KEGG: vvy:VV1158 hypothetical protein YP_001543060.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ade:Adeh_2942 periplasmic sensor hybrid histidine kinase YP_001543062.1 PFAM: XisI protein; KEGG: ter:Tery_0527 FdxN element excision controlling factor protein YP_001543064.1 PFAM: glycosyl transferase group 1; KEGG: sat:SYN_01902 mannosyltransferase YP_001543065.1 PFAM: glycosidase PH1107-related; KEGG: sat:SYN_01903 hypothetical cytosolic protein YP_001543066.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: reh:H16_A0077 predicted PecM protein YP_001543068.1 catalyzes branch migration in Holliday junction intermediates YP_001543069.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: rrs:RoseRS_4540 translation elongation factor G YP_001543070.1 PFAM: ribosomal protein S20; KEGG: cac:CAC1274 30S ribosomal protein S20 YP_001543071.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rrs:RoseRS_3077 integral membrane protein MviN YP_001543073.1 PFAM: glycoside hydrolase 8; KEGG: cth:Cthe_0269 glycoside hydrolase, family 8 YP_001543074.1 PFAM: cellulose-binding family II; glycoside hydrolase 8; KEGG: cth:Cthe_0269 glycoside hydrolase, family 8 YP_001543075.1 PFAM: glycoside hydrolase 48; cellulose-binding family II; KEGG: sco:SCO6546 secreted cellulase YP_001543076.1 PFAM: glycoside hydrolase 9; cellulose-binding family II; type 3a cellulose-binding domain protein; KEGG: tfu:Tfu_2176 cellulase, cellulose 1,4-beta-cellobiosidase YP_001543077.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sru:SRU_0369 ribose operon repressor YP_001543078.1 PFAM: extracellular solute-binding protein family 1; KEGG: ttj:TTHB082 sugar ABC transporter, periplasmic sugar-binding protein YP_001543079.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_1019 binding-protein-dependent transport systems inner membrane component YP_001543080.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_1018 binding-protein-dependent transport systems inner membrane component YP_001543081.1 PFAM: protein of unknown function DUF608; KEGG: aba:Acid345_1688 protein of unknown function DUF608 YP_001543084.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cth:Cthe_2220 NAD-dependent epimerase/dehydratase YP_001543085.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_3423 multi-sensor signal transduction histidine kinase YP_001543086.1 PFAM: cyclic nucleotide-binding; KEGG: rca:Rcas_3910 cyclic nucleotide-binding protein YP_001543087.1 PFAM: cyclase/dehydrase; KEGG: dra:DR_2377 hypothetical protein YP_001543088.1 KEGG: sus:Acid_5449 hypothetical protein YP_001543089.1 PFAM: protein of unknown function DUF419; KEGG: hch:HCH_06934 hypothetical protein YP_001543090.1 PFAM: peptidyl-tRNA hydrolase; KEGG: rca:Rcas_1729 aminoacyl-tRNA hydrolase YP_001543092.1 KEGG: nca:Noca_0726 hypothetical protein YP_001543093.1 KEGG: rca:Rcas_3734 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_001543095.1 KEGG: mxa:MXAN_7122 lipoprotein YP_001543096.1 PFAM: beta-lactamase domain protein; KEGG: rba:RB11859 PhnP protein homolog- hydrolase YP_001543098.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: swo:Swol_0838 site-specific DNA-methyltransferase (adenine-specific) YP_001543099.1 KEGG: dsy:DSY4293 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001543101.1 PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC1447 MDR-type permease, probably tetracycline resistance protein YP_001543102.1 molecular chaperone YP_001543104.1 PFAM: glycoside hydrolase 26; cellulose-binding family II; KEGG: cth:Cthe_2811 glycoside hydrolase, family 26 YP_001543105.1 PFAM: ATP-binding region ATPase domain protein; KEGG: lic:LIC10333 histidine kinase YP_001543106.1 PFAM: protein of unknown function DUF59; KEGG: rca:Rcas_1760 protein of unknown function DUF59 YP_001543107.1 KEGG: rrs:RoseRS_2110 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001543108.1 KEGG: mul:MUL_3196 hypothetical protein YP_001543110.1 KEGG: kra:Krad_0154 integral membrane protein YP_001543111.1 KEGG: mxa:MXAN_0913 hypothetical protein YP_001543112.1 KEGG: sfu:Sfum_3677 FG-GAP repeat protein YP_001543113.1 KEGG: rrs:RoseRS_0528 hypothetical protein YP_001543114.1 PFAM: Patatin; KEGG: aha:AHA_1285 alpha-beta superfamily hydrolase YP_001543115.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_2631 protein kinase YP_001543116.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: rca:Rcas_1508 peptidase membrane zinc metallopeptidase YP_001543117.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: deh:cbdb_A1612 ABC-transporter, ATPase and permease component YP_001543118.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: afw:Anae109_2774 alcohol dehydrogenase zinc-binding domain protein YP_001543119.1 KEGG: rrs:RoseRS_1703 hypothetical protein YP_001543120.1 PFAM: ferredoxin; KEGG: rxy:Rxyl_0191 ferredoxin YP_001543121.1 PFAM: aldo/keto reductase; KEGG: sus:Acid_5923 aldo/keto reductase YP_001543122.1 KEGG: bld:BLi00023 Dck YP_001543123.1 PFAM: Proprotein convertase P; peptidase domain protein; KEGG: cme:CMI070C similar to syntaxin binding protein Pfam: Toxin_5 EGF_2 Thia_YuaJ Voltage_CLC DAP10 Sec1 Herpes_BLRF2 PROSITE: EGF_1 EGF_2 ARG_RICH PRO_RICH SER_RICH THR_RICH YP_001543124.1 PFAM: Proprotein convertase P; peptidase domain protein; KEGG: rci:RCIX267 alkaline serine protease YP_001543125.1 PFAM: Proprotein convertase P; KEGG: sth:STH718 bacillopeptidase-like protein YP_001543126.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rca:Rcas_2149 2-alkenal reductase YP_001543128.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cya:CYA_2571 quaternary amine ABC transporter (QAT) family, permease YP_001543129.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cyb:CYB_0579 quaternary amine uptake ABC transporter (QAT) family, periplasmic substrate-binding protein YP_001543130.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cya:CYA_2231 quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein YP_001543131.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cya:CYA_2232 quaternary amine uptake ABC transporter (QAT) family, permease YP_001543132.1 KEGG: dra:DR_2326 hypothetical protein YP_001543133.1 PFAM: conserved hypothetical protein; KEGG: ter:Tery_2448 hypothetical protein YP_001543135.1 KEGG: rrs:RoseRS_2152 hypothetical protein YP_001543136.1 PFAM: regulatory protein GntR HTH; fatty acid responsive transcription factor FadR domain protein; KEGG: ilo:IL1821 negative regulator for fad regulon YP_001543137.1 PFAM: FAD linked oxidase domain protein; KEGG: pmy:Pmen_1558 FAD linked oxidase domain protein YP_001543138.1 PFAM: FAD dependent oxidoreductase; KEGG: hch:HCH_04624 glycerol-3-phosphate dehydrogenase YP_001543139.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rca:Rcas_1054 transcriptional regulator, AraC family YP_001543140.1 PFAM: aldo/keto reductase; KEGG: rca:Rcas_1051 2,5-didehydrogluconate reductase YP_001543141.1 PFAM: glycosyl transferase 28; KEGG: afw:Anae109_0485 glycosyl transferase 28 YP_001543142.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: rrs:RoseRS_3519 DegV family protein YP_001543143.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: rca:Rcas_0603 DegV family protein YP_001543144.1 PFAM: Dak phosphatase; KEGG: det:DET1263 DAK2 domain protein YP_001543145.1 PFAM: protein of unknown function DUF322; KEGG: amt:Amet_2772 protein of unknown function DUF322 YP_001543146.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: rrs:RoseRS_3157 RNA polymerase, sigma 70 subunit, RpoD family YP_001543147.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mma:MM_3320 oligopeptide transporter, permease YP_001543148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH2653 oligopeptide ABC transporter permease YP_001543149.1 PFAM: extracellular solute-binding protein family 5; KEGG: mba:Mbar_A3677 oligopeptide ABC transporter, oligopeptide-binding protein YP_001543150.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO3705 3-oxoacyl-[acyl-carrier-protein] reductase, related to short chain alcohol dehydrogenases YP_001543151.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: bat:BAS3018 3-oxoacyl-(acyl-carrier-protein) synthase III YP_001543152.1 PFAM: glycosyl transferase 28; KEGG: gvi:gll2420 hypothetical protein YP_001543153.1 TIGRFAM: adenylate-forming enzyme; KEGG: btk:BT9727_2999 coenzyme F390 synthetase YP_001543154.1 PFAM: beta-lactamase domain protein; KEGG: lpn:lpg1629 Zn-dependent hydrolase GumP YP_001543155.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: gur:Gura_2007 3-beta hydroxysteroid dehydrogenase/isomerase YP_001543156.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001543157.1 KEGG: rrs:RoseRS_3914 hypothetical protein YP_001543158.1 TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: rrs:RoseRS_3915 protein of unknown function, ATP binding YP_001543159.1 PFAM: Roadblock/LC7 family protein; KEGG: rrs:RoseRS_3912 roadblock/LC7 family protein YP_001543160.1 KEGG: rca:Rcas_3232 hypothetical protein YP_001543161.1 KEGG: rca:Rcas_2318 hypothetical protein YP_001543162.1 KEGG: rrs:RoseRS_1694 UV damage repair endonuclease-like protein YP_001543163.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: plu:plu2182 hypothetical protein YP_001543165.1 KEGG: chy:CHY_2375 aspartate 1-decarboxylase precursor; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_001543166.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: ace:Acel_0167 molybdenum cofactor synthesis domain YP_001543167.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: tfu:Tfu_2817 phospholipase D/Transphosphatidylase YP_001543169.1 SMART: AAA ATPase; KEGG: rca:Rcas_4086 magnesium chelatase YP_001543170.1 PFAM: protein of unknown function DUF156; KEGG: gtn:GTNG_1614 hypothetical protein YP_001543171.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: rrs:RoseRS_0879 alpha/beta hydrolase fold YP_001543172.1 KEGG: swi:Swit_3244 metal dependent phosphohydrolase YP_001543173.1 KEGG: rca:Rcas_0730 transmembrane anti-sigma factor YP_001543174.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0731 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001543175.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rca:Rcas_0880 transcriptional regulator, LysR family YP_001543176.1 PFAM: von Willebrand factor type A; KEGG: mbu:Mbur_1492 von Willebrand factor, type A YP_001543177.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_3032 integral membrane sensor signal transduction histidine kinase YP_001543178.1 KEGG: art:Arth_0442 alpha/beta hydrolase fold YP_001543179.1 KEGG: ypi:YpsIP31758_2102 hypothetical protein YP_001543180.1 KEGG: ypm:YP_1831 nucleoside-diphosphate-sugar epimerase YP_001543181.1 PFAM: band 7 protein; KEGG: cfa:479783 major vault protein YP_001543182.1 PFAM: regulatory protein TetR; KEGG: bcl:ABC0634 transcriptional regulator, TetR family YP_001543183.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: sme:SMc01405 hypothetical protein YP_001543184.1 PFAM: Rhodanese domain protein; KEGG: rca:Rcas_0312 rhodanese domain protein YP_001543185.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rca:Rcas_0311 Rieske (2Fe-2S) domain protein YP_001543186.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: rrs:RoseRS_0712 FeS assembly protein SufB YP_001543187.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: rrs:RoseRS_0711 SUF system FeS assembly protein, NifU family YP_001543188.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: rca:Rcas_0306 cysteine desulfurase, SufS subfamily YP_001543189.1 KEGG: rca:Rcas_0879 hypothetical protein YP_001543190.1 KEGG: rca:Rcas_0879 hypothetical protein YP_001543191.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: rrs:RoseRS_0709 FeS assembly protein SufD YP_001543192.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: rrs:RoseRS_0708 FeS assembly ATPase SufC YP_001543193.1 PFAM: regulatory protein DeoR; KEGG: rca:Rcas_0303 transcriptional regulator, TrmB YP_001543196.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_0772 acetyltransferase, GNAT family YP_001543197.1 KEGG: rca:Rcas_3116 hypothetical protein YP_001543198.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rrs:RoseRS_2828 endonuclease/exonuclease/phosphatase YP_001543200.1 PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: pca:Pcar_0624 L-sorbosone dehydrogenase YP_001543205.1 KEGG: swo:Swol_1724 hypothetical protein YP_001543206.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1723 ABC transporter ATP-binding protein YP_001543207.1 KEGG: rca:Rcas_3060 hypothetical protein YP_001543208.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001543213.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2664 ABC transporter ATP-binding protein YP_001543214.1 PFAM: protein of unknown function DUF990; KEGG: cpr:CPR_0171 ABC transporter, permease YP_001543215.1 PFAM: protein of unknown function DUF990; KEGG: cpr:CPR_0170 hypothetical protein YP_001543216.1 PFAM: peptidase M4 thermolysin; Propeptide PepSY amd peptidase M4; Propeptide peptidase M4 and M36; Peptidase M4 thermolysin; KEGG: btl:BALH_0539 bacillolysin YP_001543217.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; Helix-turn-helix type 11 domain protein; KEGG: rrs:RoseRS_3462 heat-inducible transcription repressor HrcA YP_001543218.1 PFAM: GrpE protein; KEGG: rca:Rcas_4391 GrpE protein YP_001543219.1 KEGG: rrs:RoseRS_3460 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_001543220.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rca:Rcas_4393 chaperone protein DnaJ YP_001543221.1 KEGG: rca:Rcas_2041 hypothetical protein YP_001543222.1 TIGRFAM: Ectoine/hydroxyEctoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bbr:BB2160 extracellular solute-binding protein YP_001543223.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_3112 PAS/PAC sensor protein YP_001543224.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ccr:CC_1643 hydrolase, haloacid dehalogenase-like family YP_001543225.1 PFAM: aldo/keto reductase; KEGG: aba:Acid345_2253 aldo/keto reductase YP_001543226.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: syf:Synpcc7942_1012 two component transcriptional regulator, winged helix family YP_001543227.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rsh:Rsph17029_1559 PAS/PAC sensor signal transduction histidine kinase YP_001543229.1 PFAM: OsmC family protein; KEGG: rle:RL2387 hypothetical protein YP_001543230.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; GAF domain protein; KEGG: bbt:BBta_1753 sensor histidine kinase (HWE family) with a GAF domain YP_001543231.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: rrs:RoseRS_0132 integral membrane protein MviN YP_001543232.1 PFAM: LmbE family protein; KEGG: dra:DR_0450 hypothetical protein YP_001543233.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: rrs:RoseRS_1043 lipoate-protein ligase B YP_001543234.1 KEGG: rca:Rcas_2105 hypothetical protein YP_001543235.1 PFAM: Methyltransferase type 11; KEGG: rca:Rcas_2343 methyltransferase type 11 YP_001543238.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sru:SRU_0369 ribose operon repressor YP_001543239.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mbu:Mbur_1925 MATE efflux family protein YP_001543240.1 PFAM: aminoglycoside phosphotransferase; KEGG: afm:AFUA_3G11050 hypothetical protein YP_001543241.1 KEGG: bra:BRADO5233 hypothetical protein YP_001543242.1 KEGG: bra:BRADO5233 hypothetical protein YP_001543243.1 KEGG: rrs:RoseRS_1947 hypothetical protein YP_001543244.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: rca:Rcas_0627 prolipoprotein diacylglyceryl transferase YP_001543245.1 KEGG: sco:SCO1748 expression regulator YP_001543246.1 PFAM: DoxX family protein; KEGG: sfr:Sfri_0206 DoxX family protein YP_001543247.1 PFAM: iron permease FTR1; KEGG: rrs:RoseRS_4468 iron permease FTR1 YP_001543248.1 KEGG: rrs:RoseRS_4469 hypothetical protein YP_001543249.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rrs:RoseRS_3197 protein of unknown function DUF21 YP_001543250.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH0699 ribosomal-protein-alanine N-acetyltransferase YP_001543252.1 KEGG: rrs:RoseRS_3749 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: KH type 1 domain protein; NusA domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_001543253.1 PFAM: protein of unknown function DUF448; KEGG: rrs:RoseRS_3750 protein of unknown function DUF448 YP_001543254.1 KEGG: bam:Bamb_6156 hypothetical protein YP_001543255.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001543256.1 PFAM: ribosome-binding factor A; KEGG: rrs:RoseRS_3752 ribosome-binding factor A YP_001543257.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: rrs:RoseRS_3754 phosphoesterase, RecJ domain protein YP_001543258.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: rrs:RoseRS_3755 tRNA pseudouridine synthase B YP_001543261.1 PFAM: von Willebrand factor type A; KEGG: ana:alr2822 hypothetical protein YP_001543262.1 SMART: protein phosphatase 2C domain protein; KEGG: ava:Ava_B0133 hypothetical protein YP_001543263.1 SMART: serine/threonine protein kinase; KEGG: ter:Tery_2828 uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains-like YP_001543264.1 KEGG: rca:Rcas_1974 hypothetical protein YP_001543265.1 KEGG: rca:Rcas_1975 hypothetical protein YP_001543266.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: pna:Pnap_4499 transketolase YP_001543267.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_001543268.1 KEGG: sru:SRU_1622 lysyl endopeptidase precursor YP_001543269.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rrs:RoseRS_3934 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_001543270.1 PFAM: cyclic nucleotide-binding; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sfu:Sfum_4027 cyclic nucleotide-binding protein YP_001543271.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tth:TTC1334 carboxypeptidase G2 precursor YP_001543272.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: kpn:KPN_01548 NADH:flavin oxidoreductase YP_001543273.1 KEGG: rca:Rcas_1638 hypothetical protein YP_001543275.1 KEGG: pin:Ping_2477 ADP-ribosylation/crystallin J1 YP_001543276.1 KEGG: rca:Rcas_3718 hypothetical protein YP_001543277.1 PFAM: thymidylate kinase; KEGG: rca:Rcas_3720 dTMP kinase YP_001543278.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: AAA ATPase; KEGG: rca:Rcas_3721 single-stranded nucleic acid binding R3H domain protein YP_001543279.1 KEGG: rca:Rcas_3722 hypothetical protein YP_001543281.1 PFAM: RNA binding S1 domain protein; KEGG: rca:Rcas_2015 RNA binding S1 domain protein YP_001543282.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1731 ATPase AAA-2 domain protein YP_001543283.1 PFAM: YceI family protein; KEGG: sth:STH698 hypothetical protein YP_001543284.1 PFAM: aminoglycoside phosphotransferase; KEGG: kra:Krad_0938 aminoglycoside phosphotransferase YP_001543285.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ava:Ava_4155 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme YP_001543290.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: vco:VC0395_0005 PnuC protein YP_001543291.1 KEGG: hch:HCH_06994 predicted ATPase/kinase involved in NAD metabolism YP_001543292.1 PFAM: band 7 protein; KEGG: eba:ebA2633 stomatin-like transmembrane protein YP_001543293.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: dre:100000652 hypothetical protein LOC100000652 YP_001543294.1 PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY1026 hypothetical protein YP_001543295.1 KEGG: hma:rrnAC3198 cell surface protein OR serine/threonine protein kinase-related protein YP_001543297.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: sth:STH1564 4-hydroxybenzoate decarboxylase YP_001543299.1 KEGG: rca:Rcas_3206 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001543300.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rca:Rcas_3988 IstB domain protein ATP-binding protein YP_001543304.1 KEGG: kpn:KPN_04707 site-specific DNA methylas; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_001543305.1 KEGG: sfu:Sfum_3853 hypothetical protein YP_001543307.1 PFAM: zinc finger SWIM domain protein YP_001543311.1 KEGG: dra:DR_0423 hypothetical protein YP_001543314.1 KEGG: ava:Ava_C0067 hypothetical protein YP_001543315.1 KEGG: rfr:Rfer_4406 hypothetical protein YP_001543316.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ava:Ava_C0069 UBA/ThiF-type NAD/FAD binding fold YP_001543317.1 KEGG: ana:all2661 unknown protein YP_001543318.1 KEGG: ava:Ava_0764 hypothetical protein YP_001543320.1 KEGG: plu:plu0233 hypothetical protein YP_001543321.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: cch:Cag_0325 hypothetical protein YP_001543322.1 KEGG: tko:TK0773 predicted ATP-dependent endonuclease, OLD family YP_001543325.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: cbf:CLI_1889 phage tail tape measure protein, TP901 family YP_001543336.1 KEGG: afu:AF2026 hypothetical protein YP_001543340.1 KEGG: aba:Acid345_4366 hypothetical protein YP_001543341.1 PFAM: Terminase small subunit; KEGG: lca:LSEI_1935 phage terminase, small subunit YP_001543347.1 KEGG: fjo:Fjoh_0934 hypothetical protein YP_001543348.1 PFAM: regulatory protein ArsR; Activator of Hsp90 ATPase 1 family protein; KEGG: xau:Xaut_1920 activator of HSP90 ATPase 1 family protein YP_001543349.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ava:Ava_1936 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_001543350.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: pth:PTH_1923 hypothetical protein YP_001543351.1 TIGRFAM: CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein TM1791.1; KEGG: pth:PTH_1924 hypothetical protein YP_001543352.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: pth:PTH_1925 hypothetical protein YP_001543353.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: ttj:TTHB162 hypothetical protein YP_001543354.1 KEGG: ttj:TTHB161 hypothetical protein YP_001543355.1 TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: tth:TT_P0115 hypothetical protein YP_001543356.1 KEGG: ace:Acel_1025 hypothetical protein YP_001543357.1 SMART: HNH nuclease; KEGG: pca:Pcar_0295 HNH endonuclease YP_001543358.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: bur:Bcep18194_A4858 phenazine biosynthesis PhzC/PhzF protein YP_001543360.1 PFAM: response regulator receiver; KEGG: rca:Rcas_2286 response regulator receiver protein YP_001543361.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_1528 PBS lyase heat domain protein repeat-containing protein YP_001543362.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cph:Cpha266_0765 NADH:flavin oxidoreductase/NADH oxidase YP_001543363.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_3355 two component transcriptional regulator, fis family YP_001543364.1 KEGG: tva:TVAG_269280 uncharacterized Cys-rich domain containing protein Pfam: PLAC8 PROSITE: CYS_RICH PRO_RICH SER_RICH YP_001543365.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV5596 acetyltransferase YP_001543366.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: rrs:RoseRS_0293 peptidase M1, membrane alanine aminopeptidase YP_001543367.1 PFAM: beta-lactamase domain protein; KEGG: ter:Tery_2865 beta-lactamase-like YP_001543368.1 KEGG: pth:PTH_2011 NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit YP_001543369.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_1646 response regulator receiver sensor signal transduction histidine kinase YP_001543370.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Cache domain protein; KEGG: rrs:RoseRS_1308 multi-sensor signal transduction histidine kinase YP_001543371.1 KEGG: rrs:RoseRS_2034 hypothetical protein YP_001543372.1 PFAM: UspA domain protein; KEGG: rca:Rcas_3007 UspA domain protein YP_001543373.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: rrs:RoseRS_1454 glutamine amidotransferase of anthranilate synthase YP_001543375.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: ana:alr9029 death on curing protein YP_001543376.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: sth:STH876 death on curing protein YP_001543377.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bja:blr3042 RNA polymerase sigma factor YP_001543378.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rca:Rcas_0284 multi-sensor signal transduction histidine kinase YP_001543379.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rrs:RoseRS_4541 FolC bifunctional protein YP_001543380.1 PFAM: response regulator receiver; KEGG: ter:Tery_4000 response regulator receiver protein YP_001543381.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: ter:Tery_3999 adenylate/guanylate cyclase YP_001543382.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: rca:Rcas_2639 multi-sensor signal transduction histidine kinase YP_001543383.1 KEGG: sth:STH3191 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3 YP_001543384.1 KEGG: rca:Rcas_2004 helix-turn-helix type 11 domain protein YP_001543385.1 TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rca:Rcas_2535 zeta-phytoene desaturase YP_001543386.1 PFAM: DSBA oxidoreductase; KEGG: rca:Rcas_3327 DsbA oxidoreductase YP_001543387.1 PFAM: Vitamin K epoxide reductase; KEGG: sth:STH2564 hypothetical protein YP_001543388.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV0503 N-acetyltransferase YP_001543389.1 PFAM: CBS domain containing protein; peptidase M50; KEGG: deh:cbdb_A741 metallopeptidase, M50 family YP_001543390.1 SMART: WD-40 repeat protein; KEGG: rrs:RoseRS_0892 WD-40 repeat protein YP_001543391.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: rca:Rcas_0552 RNA methyltransferase, TrmA family YP_001543392.1 TIGRFAM: cyanophycinase; PFAM: peptidase S51 dipeptidase E; KEGG: cps:CPS_1870 cyanophycinase YP_001543393.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_001543394.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: rrs:RoseRS_3600 fibronectin-binding A domain protein YP_001543395.1 Essential for recycling GMP and indirectly, cGMP YP_001543396.1 PFAM: DegV family protein; KEGG: deb:DehaBAV1_0262 DegV family protein YP_001543397.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_2427 GCN5-related N-acetyltransferase YP_001543398.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rrs:RoseRS_0692 ATPase associated with various cellular activities, AAA_3 YP_001543399.1 PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_3160 protein of unknown function DUF58 YP_001543400.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_2655 GCN5-related N-acetyltransferase YP_001543402.1 PFAM: regulatory protein TetR; KEGG: drm:Dred_2948 transcriptional regulator, TetR family YP_001543403.1 KEGG: tel:tlr1981 hypothetical protein YP_001543404.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_001543405.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001543406.1 KEGG: syn:slr0359 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001543407.1 PFAM: globin; KEGG: bbt:BBta_2821 nitric oxide dioxygenase (NOD) YP_001543408.1 KEGG: pth:PTH_1032 queuine/archaeosine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001543409.1 KEGG: rca:Rcas_3480 hypothetical protein YP_001543410.1 PFAM: carbonic anhydrase; KEGG: dra:DR_2238 carbonic anhydrase YP_001543411.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: syd:Syncc9605_0508 possible ring-cleaving dioxygenase YP_001543412.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_1627 glycosyl transferase group 1 YP_001543413.1 KEGG: mxa:MXAN_2622 hypothetical protein YP_001543415.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rrs:RoseRS_3105 cobalamin synthesis protein, P47K YP_001543420.1 PFAM: Methyltransferase type 12; KEGG: sen:SACE_3689 hypothetical protein YP_001543421.1 PFAM: integrase; integrase domain protein SAM domain protein; KEGG: ava:Ava_B0012 phage integrase YP_001543423.1 PFAM: Na-Ca exchanger/integrin-beta4; KEGG: ana:all3346 hypothetical protein YP_001543427.1 PFAM: N-acetylmuramoyl-L-alanine amidase 2; KEGG: rca:Rcas_0212 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_001543429.1 PFAM: Resolvase helix-turn-helix domain protein YP_001543430.1 KEGG: fal:FRAAL2741 hypothetical protein YP_001543432.1 KEGG: mdo:100022815 similar to MEX3A YP_001543433.1 KEGG: dra:DR_A0099 hypothetical protein YP_001543437.1 KEGG: rde:RD1_1932 signal recognition particle-docking protein FtsY YP_001543440.1 KEGG: fjo:Fjoh_0980 hypothetical protein YP_001543449.1 KEGG: ana:alr9504 unknown protein YP_001543451.1 KEGG: eba:p1B50 hypothetical protein YP_001543452.1 PFAM: TOPRIM domain protein; P4 alpha zinc-binding domain protein; KEGG: dvu:DVU2879 hypothetical protein YP_001543455.1 PFAM: integrase; KEGG: det:DET0905 site-specific recombinase, phage integrase YP_001543456.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: reu:Reut_A1044 protein of unknown function DUF6, transmembrane YP_001543457.1 KEGG: vha:VIBHAR_05008 hypothetical protein YP_001543458.1 PFAM: NUDIX hydrolase YP_001543459.1 KEGG: rca:Rcas_0994 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001543460.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_3398 ABC transporter related YP_001543461.1 KEGG: rrs:RoseRS_3748 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_001543463.1 PFAM: Silent information regulator protein Sir2; KEGG: rxy:Rxyl_1341 silent information regulator protein Sir2 YP_001543464.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rrs:RoseRS_2705 phospholipid/glycerol acyltransferase YP_001543465.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase YP_001543466.1 KEGG: rrs:RoseRS_2922 hypothetical protein YP_001543467.1 PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2703 hypothetical protein YP_001543468.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bba:Bd3186 methyltransferase YP_001543469.1 KEGG: rca:Rcas_2681 hypothetical protein YP_001543470.1 KEGG: rrs:RoseRS_1448 hypothetical protein YP_001543471.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: pth:PTH_1923 hypothetical protein YP_001543472.1 TIGRFAM: CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein TM1791.1; KEGG: pth:PTH_1924 hypothetical protein YP_001543473.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: pth:PTH_1925 hypothetical protein YP_001543474.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: pth:PTH_1926 hypothetical protein YP_001543475.1 KEGG: pth:PTH_1927 hypothetical protein YP_001543476.1 TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: pth:PTH_1928 predicted hydrolase YP_001543477.1 PFAM: Forkhead-associated protein; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1844 protein kinase YP_001543478.1 KEGG: rxy:Rxyl_2331 hypothetical protein YP_001543479.1 PFAM: peptidase U32; KEGG: sus:Acid_6567 peptidase U32 YP_001543480.1 PFAM: manganese and iron superoxide dismutase; KEGG: sth:STH1047 superoxide dismutase YP_001543481.1 PFAM: protein of unknown function DUF55; KEGG: rca:Rcas_2368 protein of unknown function DUF55 YP_001543482.1 PFAM: protein of unknown function DUF333; KEGG: uma:UM03637.1 hypothetical protein YP_001543484.1 PFAM: Bacitracin resistance protein BacA; KEGG: mta:Moth_0571 undecaprenol kinase YP_001543485.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rrs:RoseRS_3868 glutamine--scyllo-inositol transaminase YP_001543486.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rca:Rcas_1579 two component transcriptional regulator, LuxR family YP_001543487.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_0939 histidine kinase YP_001543488.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: sco:SCO7528 conserved hypothetical protein SC8G12.04. YP_001543489.1 PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: pol:Bpro_0147 helix-turn-helix, type 11 YP_001543490.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aba:Acid345_4584 alcohol dehydrogenase, zinc-binding YP_001543491.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mav:MAV_2098 short chain dehydrogenase YP_001543492.1 PFAM: regulatory protein TetR; KEGG: pfl:PFL_2927 transcriptional regulator, TetR family YP_001543493.1 PFAM: protein kinase; protein of unknown function DUF323; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_2393 serine/threonine protein kinase YP_001543494.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_0009 drug resistance ATPase-1 (drug RA1) ABC transporter family, ATP-binding protein YP_001543495.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_3177 adenylate/guanylate cyclase with GAF and PAS/PAC sensors YP_001543496.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sth:STH750 two-component response regulator, probably involved in phosphate sensing YP_001543498.1 PFAM: CheW domain protein; KEGG: rrs:RoseRS_0039 CheW protein YP_001543500.1 PFAM: chemotaxis sensory transducer; KEGG: rrs:RoseRS_0037 methyl-accepting chemotaxis sensory transducer YP_001543501.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: rrs:RoseRS_0036 CheA signal transduction histidine kinase YP_001543502.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_0035 response regulator receiver protein YP_001543503.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: rrs:RoseRS_0034 response regulator receiver modulated CheB methylesterase YP_001543504.1 KEGG: rrs:RoseRS_0033 protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase CheR-type; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001543505.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_0032 stage II sporulation E family protein YP_001543506.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0031 hypothetical protein YP_001543507.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rca:Rcas_4212 anti-sigma regulatory factor, serine/threonine protein kinase YP_001543508.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0029 anti-sigma-factor antagonist YP_001543509.1 KEGG: dge:Dgeo_0121 fatty acid desaturase, type 2 YP_001543511.1 PFAM: transcriptional regulator PadR family protein; KEGG: bay:RBAM_035250 transcriptional regulator YP_001543513.1 PFAM: oxidoreductase domain protein; KEGG: tma:TM0312 hypothetical protein YP_001543514.1 KEGG: rrs:RoseRS_1311 hypothetical protein YP_001543515.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: rca:Rcas_1808 methyltransferase YP_001543516.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001543517.1 KEGG: rrs:RoseRS_2611 hypothetical protein YP_001543518.1 PFAM: protein of unknown function DUF177; KEGG: rca:Rcas_1805 protein of unknown function DUF177 YP_001543519.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: rxy:Rxyl_1376 ribosomal protein L32 YP_001543520.1 KEGG: rrs:RoseRS_2614 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001543521.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: rrs:RoseRS_3469 malonyl CoA-acyl carrier protein transacylase YP_001543522.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rca:Rcas_2488 short-chain dehydrogenase/reductase SDR YP_001543523.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rca:Rcas_2536 short-chain dehydrogenase/reductase SDR YP_001543524.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_0987 3-oxoacyl-(acyl-carrier-protein) reductase YP_001543525.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rrs:RoseRS_3203 acetyl-CoA carboxylase, biotin carboxylase YP_001543526.1 PFAM: protein of unknown function DUF322; KEGG: dsy:DSY2365 hypothetical protein YP_001543527.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rca:Rcas_3255 NusB antitermination factor YP_001543528.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: pla:Plav_3358 acyl carrier protein YP_001543529.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: kra:Krad_1154 twin-arginine translocation protein, TatB subunit YP_001543530.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rca:Rcas_3258 sec-independent protein translocase, TatC subunit YP_001543532.1 KEGG: rrs:RoseRS_1296 hypothetical protein YP_001543533.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: rca:Rcas_2320 glutamyl-tRNA synthetase YP_001543534.1 KEGG: rrs:RoseRS_4125 zinc finger, SWIM domain protein YP_001543535.1 PFAM: blue (type 1) copper domain protein; KEGG: rrs:RoseRS_2366 blue (type 1) copper domain protein YP_001543536.1 KEGG: aba:Acid345_4612 hypothetical protein YP_001543537.1 PFAM: glycosyl transferase 2; KEGG: ppd:Ppro_2693 glycosyl transferase, family 2 YP_001543538.1 PFAM: pyruvate carboxyltransferase; KEGG: rrs:RoseRS_4162 pyruvate carboxyltransferase YP_001543539.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: rca:Rcas_1428 single-stranded nucleic acid binding R3H domain protein YP_001543540.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: rca:Rcas_1427 60 kDa inner membrane insertion protein YP_001543541.1 PFAM: protein of unknown function DUF37; KEGG: rrs:RoseRS_3917 protein of unknown function DUF37 YP_001543542.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: rca:Rcas_1424 ribonuclease P protein component YP_001543543.1 PFAM: ribosomal protein L34; KEGG: rca:Rcas_1423 ribosomal protein L34 YP_001543544.1 PFAM: beta-lactamase domain protein; KEGG: rxy:Rxyl_2947 beta-lactamase-like protein YP_001543545.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mxa:MXAN_5761 acyltransferase domain protein YP_001543548.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sus:Acid_4295 response regulator receiver modulated serine phosphatase YP_001543549.1 KEGG: gsu:GSU1489 hypothetical protein YP_001543550.1 PFAM: glycosyl transferase 2; KEGG: rrs:RoseRS_0386 glycosyl transferase, family 2 YP_001543551.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_2752 glycosyl transferase group 1 YP_001543552.1 PFAM: NUDIX hydrolase; KEGG: rca:Rcas_1651 NUDIX hydrolase YP_001543553.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0525 ABC transporter related YP_001543554.1 PFAM: regulatory protein LacI; KEGG: rca:Rcas_1277 transcriptional regulator, LacI family YP_001543556.1 KEGG: swi:Swit_5292 hypothetical protein YP_001543557.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG12149 similar to antibiotic resistance protein YP_001543561.1 KEGG: rca:Rcas_1125 hypothetical protein YP_001543563.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rrs:RoseRS_4592 pseudouridine synthase YP_001543564.1 PFAM: LVIVD repeat protein; KEGG: mma:MM_0391 hypothetical protein YP_001543565.1 PFAM: GCN5-related N-acetyltransferase YP_001543566.1 KEGG: aba:Acid345_4155 transcriptional regulatory protein-like YP_001543567.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: rrs:RoseRS_3588 DNA polymerase III, delta prime subunit YP_001543568.1 PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_0464 acetyltransferase, GNAT family YP_001543570.1 PFAM: response regulator receiver; KEGG: rme:Rmet_3477 two component transcriptional regulator, winged helix family YP_001543571.1 KEGG: aav:Aave_4517 acyl protein synthase/acyl-CoA reductase-like protein YP_001543572.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ade:Adeh_0133 major facilitator superfamily MFS_1 transporter YP_001543573.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: maq:Maqu_3846 diguanylate cyclase YP_001543574.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: sen:SACE_6518 glycerol kinase YP_001543577.1 PFAM: protein of unknown function DUF58; KEGG: sth:STH1769 hypothetical protein YP_001543578.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rca:Rcas_0210 ATPase associated with various cellular activities AAA_3 YP_001543579.1 KEGG: rca:Rcas_0996 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001543580.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_0997 two component transcriptional regulator, winged helix family YP_001543581.1 PFAM: protein of unknown function DUF1295; KEGG: aeh:Mlg_0694 protein of unknown function DUF1295 YP_001543582.1 KEGG: sfu:Sfum_1199 glycosyl transferase, family 39 YP_001543583.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: eca:ECA0757 membrane protein YP_001543584.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: cte:CT1640 phosphoenolpyruvate carboxylase YP_001543585.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: afw:Anae109_1010 acetyl-CoA hydrolase/transferase YP_001543586.1 KEGG: rca:Rcas_0877 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase YP_001543587.1 KEGG: ava:Ava_A0017 hypothetical protein YP_001543588.1 PFAM: protein of unknown function UPF0027; KEGG: rca:Rcas_0873 protein of unknown function UPF0027 YP_001543589.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi00862 YfiE YP_001543594.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_1088 two component transcriptional regulator, winged helix family YP_001543595.1 KEGG: rrs:RoseRS_1897 GAF sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001543596.1 PFAM: glycosyl transferase 2; KEGG: sus:Acid_6302 glycosyl transferase, family 2 YP_001543597.1 PFAM: glycosyl transferase group 1; KEGG: mfa:Mfla_2015 glycosyl transferase, group 1 YP_001543598.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: dge:Dgeo_2665 glycosyl hydrolase 98, carbohydrate binding module YP_001543599.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: sru:SRU_0527 uridine kinase YP_001543601.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: spo:SPCC1840.04 hypothetical protein YP_001543602.1 KEGG: lbl:LBL_0194 hypothetical protein YP_001543603.1 KEGG: hch:HCH_03141 hypothetical protein YP_001543604.1 PFAM: FAD dependent oxidoreductase; KEGG: mgm:Mmc1_0291 FAD dependent oxidoreductase YP_001543605.1 PFAM: monooxygenase FAD-binding; KEGG: gvi:gll1952 hypothetical protein YP_001543606.1 PFAM: monooxygenase FAD-binding; KEGG: gvi:gll1952 hypothetical protein YP_001543607.1 KEGG: gvi:gll1952 hypothetical protein YP_001543608.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: fjo:Fjoh_4290 intracellular protease, PfpI family YP_001543609.1 PFAM: NUDIX hydrolase; KEGG: fal:FRAAL4301 MutT-like protein YP_001543610.1 KEGG: bad:BAD_1309 hypothetical protein YP_001543611.1 KEGG: rha:RHA1_ro00866 hypothetical protein YP_001543612.1 KEGG: rca:Rcas_4329 hypothetical protein YP_001543613.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001543614.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pth:PTH_2258 response regulator YP_001543615.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nca:Noca_4295 enoyl-CoA hydratase YP_001543616.1 KEGG: syg:sync_1786 hypothetical protein YP_001543617.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001543618.1 KEGG: rrs:RoseRS_2137 hypothetical protein YP_001543619.1 KEGG: rrs:RoseRS_2138 hypothetical protein YP_001543620.1 PFAM: protein of unknown function DUF1385; KEGG: rrs:RoseRS_2139 protein of unknown function DUF1385 YP_001543621.1 KEGG: rca:Rcas_1731 hypothetical protein YP_001543622.1 TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: rrs:RoseRS_2141 small GTP-binding protein YP_001543623.1 KEGG: sso:SSO2371 hypothetical protein YP_001543624.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001543625.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: rrs:RoseRS_1334 MazG family protein YP_001543626.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gka:GK0656 post-translocation molecular chaperone YP_001543627.1 PFAM: glycine hydroxymethyltransferase; KEGG: chy:CHY_2557 serine hydroxymethyltransferase YP_001543628.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0231 GAF sensor hybrid histidine kinase YP_001543629.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rca:Rcas_0977 enoyl-CoA hydratase/isomerase YP_001543630.1 KEGG: rrs:RoseRS_1616 hypothetical protein YP_001543631.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: pth:PTH_1746 fatty acid/phospholipid biosynthesis enzyme YP_001543632.1 KEGG: nfa:nfa5620 hypothetical protein YP_001543633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: syf:Synpcc7942_0460 acetyltransferase YP_001543634.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ana:alr1537 hypothetical protein YP_001543635.1 PFAM: Ricin B lectin; KEGG: sma:SAV1044 hydrolase YP_001543639.1 PFAM: peptidase M23B; KEGG: rrs:RoseRS_4626 peptidase M23B YP_001543641.1 KEGG: stp:Strop_2696 hypothetical protein YP_001543642.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: stp:Strop_2697 beta-ketoacyl synthase YP_001543643.1 KEGG: stp:Strop_0597 hypothetical protein YP_001543644.1 PFAM: ASPIC/UnbV domain protein; KEGG: stp:Strop_2699 ASPIC/UnbV domain protein YP_001543645.1 PFAM: protein of unknown function DUF1702; KEGG: stp:Strop_2700 protein of unknown function DUF1702 YP_001543646.1 PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: stp:Strop_2699 ASPIC/UnbV domain protein YP_001543647.1 KEGG: stp:Strop_2698 hypothetical protein YP_001543648.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC3475 transcriptional regulator, AraC/XylS family YP_001543649.1 PFAM: cysteine dioxygenase type I YP_001543650.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: stp:Strop_0600 helix-turn-helix-domain containing protein, AraC type YP_001543652.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: tme:Tmel_0780 hypothetical protein YP_001543653.1 KEGG: stp:Strop_0601 PBS lyase heat domain protein repeat-containing protein YP_001543654.1 PFAM: major facilitator superfamily MFS_1; KEGG: rca:Rcas_2856 major facilitator superfamily MFS_1 YP_001543655.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: deb:DehaBAV1_0051 ATPase AAA-2 domain protein YP_001543658.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001543659.1 PFAM: GAF domain protein; KEGG: mag:amb0233 HD-GYP domain YP_001543660.1 PFAM: glycoside hydrolase 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase 2 sugar binding; KEGG: rrs:RoseRS_1576 beta-mannosidase YP_001543661.1 PFAM: mannose-6-phosphate isomerase type I; KEGG: rca:Rcas_1081 mannose-6-phosphate isomerase YP_001543662.1 PFAM: Acetyl xylan esterase; KEGG: rrs:RoseRS_0796 acetyl xylan esterase YP_001543663.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: pdi:BDI_0057 N-acyl-D-glucosamine 2-epimerase YP_001543664.1 PFAM: glycoside hydrolase 5; KEGG: tma:TM1752 endoglucanase YP_001543665.1 KEGG: csc:Csac_2528 hypothetical protein YP_001543666.1 PFAM: extracellular solute-binding protein family 1; KEGG: lin:lin1841 similar to sugar ABC transporter binding protein YP_001543667.1 PFAM: glycosidase PH1107-related; KEGG: bfs:BF1316 hypothetical protein YP_001543668.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0797 Transcriptional regulator YP_001543669.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001543670.1 KEGG: tel:tll0586 phosphoribosylaminoimidazole carboxylase catalytic chain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001543671.1 KEGG: gvi:gll1252 phosphoribosylaminoimidazole carboxylase ATPase-subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_001543672.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: rrs:RoseRS_0045 GTPase subunit of restriction endonuclease-like protein YP_001543673.1 PFAM: Forkhead-associated protein; ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: rrs:RoseRS_3935 FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits YP_001543674.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_2765 protein phosphatase 2C domain protein YP_001543675.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_2393 serine/threonine protein kinase YP_001543676.1 PFAM: Forkhead-associated protein; SMART: zinc finger RanBP2-type; KEGG: rca:Rcas_2395 FHA domain containing protein YP_001543677.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: reu:Reut_B5662 haloacid dehalogenase, type II:HAD-superfamily hydrolase, subfamily IA, variant 2 YP_001543679.1 PFAM: beta-lactamase domain protein; KEGG: bca:BCE_3466 metallo-beta-lactamase YP_001543680.1 PFAM: thioesterase superfamily protein; KEGG: aav:Aave_2878 uncharacterized domain 1 YP_001543681.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE1633 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain YP_001543682.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sru:SRU_2487 two-component sensor histidine kinase YP_001543684.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_1833 ABC transporter related YP_001543685.1 PFAM: protein of unknown function DUF214; KEGG: rpe:RPE_0305 protein of unknown function DUF214 YP_001543686.1 PFAM: transcriptional activator domain; KEGG: rrs:RoseRS_3322 transcriptional activator domain YP_001543693.1 PFAM: protein of unknown function DUF181; KEGG: pac:PPA0862 conserved protein DUF181 YP_001543694.1 KEGG: rsh:Rsph17029_3717 hypothetical protein YP_001543695.1 KEGG: ape:APE_0492.1 hypothetical protein YP_001543696.1 KEGG: mka:MK1490 nitroreductase YP_001543697.1 KEGG: mmw:Mmwyl1_0300 hypothetical protein YP_001543698.1 PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_2433 lantibiotic dehydratase domain protein YP_001543700.1 KEGG: bce:BC5083 lantibiotic biosynthesis protein YP_001543701.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sru:SRU_0752 ABC transporter, ATP-binding protein YP_001543702.1 PFAM: ABC-2 type transporter; KEGG: sco:SCO5453 integral membrane protein YP_001543703.1 KEGG: rrs:RoseRS_1758 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase YP_001543705.1 KEGG: rca:Rcas_2039 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_001543706.1 KEGG: rrs:RoseRS_0201 hypothetical protein YP_001543707.1 KEGG: rrs:RoseRS_0200 hypothetical protein YP_001543708.1 PFAM: Roadblock/LC7 family protein; KEGG: rca:Rcas_4340 roadblock/LC7 family protein YP_001543709.1 PFAM: Roadblock/LC7 family protein; KEGG: mem:Memar_1006 roadblock/LC7 family protein YP_001543710.1 KEGG: rca:Rcas_4341 hypothetical protein YP_001543711.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: dge:Dgeo_2670 glycosyl hydrolase 98, carbohydrate binding module YP_001543712.1 PFAM: heat shock protein Hsp20; KEGG: rca:Rcas_4342 heat shock protein HSP20 YP_001543713.1 KEGG: rrs:RoseRS_0196 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001543714.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rca:Rcas_2197 conserved repeat domain YP_001543716.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: drm:Dred_3090 CHASE2 sensor protein YP_001543717.1 PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM YP_001543718.1 TIGRFAM: RNA polymerase sigma-70; KEGG: pap:PSPA7_2258 probable sigma-70 factor, ECF subfamily YP_001543720.1 PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3291 carboxyl transferase YP_001543721.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: rca:Rcas_3176 phosphoribosylglycinamide formyltransferase YP_001543722.1 KEGG: rrs:RoseRS_2692 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_001543723.1 PFAM: regulatory protein LuxR; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rxy:Rxyl_2946 transcriptional regulator, LuxR family YP_001543724.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2719 ABC transporter related YP_001543725.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2717 ABC transporter related YP_001543726.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: rca:Rcas_4061 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family YP_001543727.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: gvi:glr0833 hypothetical protein YP_001543728.1 TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; KEGG: rrs:RoseRS_3319 threonine dehydratase YP_001543729.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG13059 similar to hypothetical proteins YP_001543730.1 KEGG: sma:SAV1904 hypothetical protein YP_001543731.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-70 ECF type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rxy:Rxyl_2365 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001543732.1 PFAM: amine oxidase; HI0933 family protein; FAD dependent oxidoreductase; KEGG: mxa:MXAN_0202 amine oxidase, flavin-containing YP_001543733.1 KEGG: reh:H16_A3217 hypothetical membrane associated protein YP_001543734.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rca:Rcas_1888 acyl-CoA dehydrogenase domain protein YP_001543735.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rrs:RoseRS_2972 acyl-CoA dehydrogenase domain protein YP_001543736.1 PFAM: Sterol-binding domain protein; KEGG: rrs:RoseRS_2973 hypothetical protein YP_001543737.1 KEGG: sus:Acid_2576 tetratricopeptide TPR_2 repeat protein YP_001543738.1 PFAM: OsmC family protein; KEGG: ttj:TTHA1625 osmotically inducible protein OsmC YP_001543739.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: rca:Rcas_0246 hydrolase, TatD family YP_001543740.1 PFAM: transglutaminase domain protein; KEGG: rrs:RoseRS_0315 transglutaminase domain protein YP_001543741.1 PFAM: response regulator receiver; KEGG: rca:Rcas_1967 response regulator receiver protein YP_001543742.1 KEGG: noc:Noc_0728 hypothetical protein YP_001543744.1 PFAM: Peptidoglycan-binding domain 1 protein; Stage II sporulation D domain protein; KEGG: xau:Xaut_2755 peptidoglycan-binding domain 1 protein YP_001543745.1 PFAM: Translin; KEGG: rca:Rcas_3397 translin YP_001543746.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001543747.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fps:FP1132 hypothetical oxidoreductase YkuF YP_001543748.1 PFAM: regulatory protein TetR; KEGG: reu:Reut_C6095 regulatory protein, TetR YP_001543749.1 PFAM: cytochrome P450; KEGG: bca:BCE_2696 cytochrome p450 YP_001543750.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: oih:OB0992 3-ketoacyl-(acyl-carrier-protein) reductase YP_001543751.1 PFAM: histidine kinase HAMP region domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: ter:Tery_4189 periplasmic sensor signal transduction histidine kinase YP_001543752.1 PFAM: OsmC family protein; KEGG: art:Arth_2348 OsmC family protein YP_001543753.1 PFAM: WD40 domain protein beta Propeller; KEGG: rca:Rcas_4129 WD40 domain protein beta propeller YP_001543754.1 PFAM: thioesterase superfamily protein; KEGG: rxy:Rxyl_3160 thioesterase superfamily YP_001543755.1 KEGG: rca:Rcas_2100 hypothetical protein YP_001543756.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rxy:Rxyl_2873 cation diffusion facilitator family transporter YP_001543758.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sth:STH920 two-component sensor histidine kinase YP_001543759.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sth:STH921 two-component response regulator YP_001543760.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aba:Acid345_1627 major facilitator superfamily (MFS) transporter YP_001543761.1 KEGG: ana:all0219 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold domain protein; SMART: PAS domain containing protein YP_001543762.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; KEGG: rci:RCIX420 predicted signal transduction histidine kinase, fragment 2 YP_001543763.1 PFAM: alpha/beta hydrolase fold; KEGG: ava:Ava_0685 alpha/beta hydrolase fold YP_001543766.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3893 protein kinase YP_001543767.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_2341 glycosyl transferase group 1 YP_001543772.1 KEGG: noc:Noc_2028 hypothetical protein YP_001543773.1 PFAM: protein of unknown function DUF323; KEGG: noc:Noc_2029 protein of unknown function DUF323 YP_001543774.1 KEGG: rca:Rcas_2965 hypothetical protein YP_001543775.1 KEGG: rrs:RoseRS_2469 LPXTG-motif cell wall anchor domain YP_001543776.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: rrs:RoseRS_2003 acetate--CoA ligase YP_001543777.1 KEGG: rca:Rcas_3306 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001543778.1 PFAM: metallophosphoesterase; KEGG: mxa:MXAN_4086 Ser/Thr protein phosphatase YP_001543779.1 KEGG: rle:pRL100169 rhizosphere expressed protein RhiA YP_001543780.1 KEGG: rxy:Rxyl_2984 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001543781.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dsy:DSY4980 hypothetical protein YP_001543783.1 KEGG: rca:Rcas_4339 hypothetical protein YP_001543784.1 PFAM: CHAP domain containing protein; KEGG: mhu:Mhun_3122 integrins alpha chain YP_001543785.1 PFAM: regulatory protein LuxR; KEGG: abo:ABO_2154 transcriptional regulatory protein DegU (protease production enhancer protein) YP_001543786.1 PFAM: regulatory protein LuxR; KEGG: pmy:Pmen_3658 regulatory protein, LuxR YP_001543787.1 SMART: helix-turn-helix domain protein YP_001543788.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_1771 acetyltransferase, GNAT family protein YP_001543789.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: fjo:Fjoh_1737 helix-turn-helix domain protein YP_001543790.1 PFAM: regulatory protein TetR; KEGG: rca:Rcas_4171 transcriptional regulator, TetR family YP_001543791.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: deh:cbdb_A1621 major facilitator family transporter YP_001543792.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_001543793.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: sth:STH590 isocitrate lyase YP_001543794.1 PFAM: shikimate kinase; KEGG: mem:Memar_2255 shikimate kinase YP_001543799.1 KEGG: ret:RHE_PD00078 hypothetical protein YP_001543800.1 PFAM: aminoglycoside phosphotransferase YP_001543801.1 PFAM: metallophosphoesterase; KEGG: mkm:Mkms_4868 metallophosphoesterase YP_001543802.1 PFAM: Chloride channel core; KEGG: bvi:Bcep1808_4179 Cl-channel, voltage-gated family protein YP_001543803.1 PFAM: glycosyl transferase group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein YP_001543804.1 PFAM: O-methyltransferase 3; KEGG: rpe:RPE_4247 glycosyl transferase, family 2 YP_001543805.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: pca:Pcar_1282 ADP-heptose synthase YP_001543806.1 KEGG: cph:Cpha266_0356 hypothetical protein YP_001543807.1 PFAM: Methyltransferase type 11; KEGG: acr:Acry_2401 methyltransferase type 11 YP_001543808.1 PFAM: glycosyl transferase group 1; KEGG: rci:RCIX212 glycosyltransferase (group 1) YP_001543809.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3354 ABC transporter related YP_001543810.1 PFAM: ABC-2 type transporter; KEGG: sus:Acid_4640 ABC-2 type transporter YP_001543811.1 PFAM: protein of unknown function DUF541; KEGG: mlo:mlr2408 hypothetical protein YP_001543812.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rca:Rcas_0734 threonine aldolase YP_001543813.1 KEGG: art:Arth_3332 hypothetical protein YP_001543814.1 KEGG: rca:Rcas_1885 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_001543815.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mxa:MXAN_6492 oxidoreductase, Gfo/Idh/MocA family YP_001543816.1 KEGG: cac:CAC1097 hypothetical protein YP_001543817.1 PFAM: protein of unknown function DUF255; KEGG: rxy:Rxyl_2540 protein of unknown function DUF255 YP_001543819.1 PFAM: ATP-NAD/AcoX kinase; KEGG: rca:Rcas_0932 ATP-NAD/AcoX kinase YP_001543820.1 PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein YP_001543821.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1879 tetratricopeptide TPR_2 repeat protein YP_001543822.1 PFAM: Abortive infection protein; KEGG: rrs:RoseRS_1880 abortive infection protein YP_001543823.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001543824.1 KEGG: eca:ECA0509 hypothetical protein YP_001543825.1 PFAM: response regulator receiver; KEGG: ppr:PBPRA0526 hypothetical sensory box sensor histidine kinase/response regulator YP_001543826.1 KEGG: ccr:CC_2663 hypothetical protein YP_001543827.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001543828.1 PFAM: aminotransferase class I and II; KEGG: rrs:RoseRS_0576 aminotransferase, class I and II YP_001543829.1 PFAM: cobalbumin biosynthesis protein; KEGG: rrs:RoseRS_0575 adenosylcobinamide-phosphate guanylyltransferase YP_001543830.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0712 ABC transporter-related protein YP_001543831.1 PFAM: transport system permease; KEGG: deb:DehaBAV1_0621 transport system permease YP_001543832.1 PFAM: periplasmic binding protein; KEGG: det:DET0684 ABC-type cobalamin/Fe3+-siderophores transport system, periplasmic binding protein YP_001543833.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: rrs:RoseRS_0564 cobalamin biosynthesis protein CobD YP_001543834.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sru:SRU_1881 methyltransferase YP_001543835.1 KEGG: rca:Rcas_0648 cobaltochelatase, CobN subunit; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase YP_001543836.1 KEGG: rrs:RoseRS_0557 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001543837.1 KEGG: rrs:RoseRS_1641 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase YP_001543838.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ter:Tery_2818 binding-protein-dependent transport systems inner membrane component YP_001543839.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1644 ornithine carbamoyltransferase YP_001543840.1 PFAM: extracellular solute-binding protein family 1; KEGG: rca:Rcas_2837 extracellular solute-binding protein family 1 YP_001543841.1 TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: pca:Pcar_1282 ADP-heptose synthase YP_001543842.1 PFAM: PfkB domain protein; KEGG: syc:syc1764_c ADP-heptose synthase YP_001543843.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_3239 short-chain dehydrogenase/reductase SDR YP_001543844.1 PFAM: Dual specificity protein phosphatase; KEGG: rca:Rcas_3944 dual specificity protein phosphatase YP_001543845.1 PFAM: sugar fermentation stimulation protein; KEGG: mta:Moth_0431 sugar fermentation stimulation protein YP_001543847.1 PFAM: regulatory protein ArsR; KEGG: nfa:nfa21810 transcriptional regulator YP_001543848.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: sus:Acid_2291 activator of HSP90 ATPase 1 family protein YP_001543849.1 KEGG: ade:Adeh_3126 hypothetical protein YP_001543852.1 PFAM: PSP1 domain protein; KEGG: rca:Rcas_2254 PSP1 domain protein YP_001543853.1 PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: rca:Rcas_2253 adenylate/guanylate cyclase with GAF sensor and FHA domain YP_001543854.1 PFAM: ROK family protein; KEGG: rca:Rcas_0678 ROK family protein YP_001543856.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rrs:RoseRS_1191 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001543857.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: dge:Dgeo_2558 multicopper oxidase, type 3 YP_001543859.1 PFAM: response regulator receiver; UspA domain protein; KEGG: rrs:RoseRS_2107 UspA domain protein YP_001543860.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001543861.1 PFAM: YiaAB two helix domain protein; KEGG: dra:DR_1094 hypothetical protein YP_001543862.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcl:ABC3541 hypothetical protein YP_001543863.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_L_3469 hypothetical protein YP_001543864.1 PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM YP_001543865.1 KEGG: rrs:RoseRS_4011 polysaccharide deacetylase YP_001543866.1 KEGG: rca:Rcas_0261 hypothetical protein YP_001543867.1 KEGG: rca:Rcas_0262 hypothetical protein YP_001543868.1 PFAM: Methyltransferase type 11; KEGG: chu:CHU_3795 SAM-dependent methyltransferase YP_001543869.1 PFAM: glycosyl transferase 39; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39 YP_001543870.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001543871.1 PFAM: gamma-glutamyltranspeptidase; KEGG: sth:STH3166 gamma-glutamyltranspeptidase YP_001543872.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001543873.1 PFAM: response regulator receiver; KEGG: ter:Tery_4000 response regulator receiver protein YP_001543874.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; CHASE4 domain protein; KEGG: gsu:GSU2511 sensory box/GGDEF family protein YP_001543875.1 PFAM: regulatory protein ArsR; KEGG: sth:STH2610 hypothetical protein YP_001543876.1 PFAM: protein of unknown function DUF344; KEGG: rrs:RoseRS_1080 protein of unknown function DUF344 YP_001543877.1 PFAM: homoserine dehydrogenase; KEGG: ath:AT5G21060 homoserine dehydrogenase YP_001543878.1 KEGG: rca:Rcas_3952 hypothetical protein YP_001543879.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa4200 ABC transporter ATP-binding protein YP_001543880.1 PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rxy:Rxyl_2809 two component transcriptional regulator, LuxR family YP_001543881.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rxy:Rxyl_2810 signal transduction histidine kinase YP_001543883.1 PFAM: Radical SAM domain protein; KEGG: rrs:RoseRS_3317 radical SAM domain protein YP_001543884.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ana:all0219 hypothetical protein YP_001543885.1 KEGG: mxa:MXAN_6226 hypothetical protein YP_001543886.1 PFAM: PspC domain protein; KEGG: rrs:RoseRS_0522 phage shock protein C, PspC YP_001543887.1 PFAM: CHAP domain containing protein YP_001543888.1 PFAM: NB-ARC domain protein; KEGG: gvi:glr2723 unknown protein YP_001543889.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_2811 tetratricopeptide TPR_2 YP_001543890.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mxa:MXAN_0313 mandelate racemase/muconate lactonizing enzyme family protein YP_001543891.1 KEGG: rrs:RoseRS_2800 hypothetical protein YP_001543892.1 PFAM: von Willebrand factor type A; KEGG: rca:Rcas_2577 von Willebrand factor type A YP_001543893.1 KEGG: rca:Rcas_2576 hypothetical protein YP_001543895.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: rrs:RoseRS_3524 Cof-like hydrolase YP_001543896.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_0780 glycosyl transferase, group 1 YP_001543897.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_0780 glycosyl transferase, group 1 YP_001543898.1 KEGG: rrs:RoseRS_0779 glycosyl transferase, family 39 YP_001543899.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: mta:Moth_2503 selenocysteine-specific translation elongation factor YP_001543900.1 KEGG: rca:Rcas_2266 hypothetical protein YP_001543901.1 KEGG: rca:Rcas_1834 tetratricopeptide TPR_2 repeat protein YP_001543903.1 PFAM: transposase IS4 family protein; KEGG: plu:plu4276 transposase, IS982 family YP_001543904.1 KEGG: rrs:RoseRS_2183 DNA methylase N-4/N-6 domain protein YP_001543905.1 KEGG: nfa:nfa38650 hypothetical protein YP_001543907.1 PFAM: purine phosphorylase 2; KEGG: sth:STH815 methylthioadenosine phosphorylase YP_001543908.1 KEGG: sth:STH814 methylthioadenosine phosphorylase YP_001543909.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rca:Rcas_1086 methionine aminopeptidase, type I YP_001543910.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rca:Rcas_1086 methionine aminopeptidase, type I YP_001543911.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: stl:stu0521 prolipoprotein signal peptidase (spase II) YP_001543912.1 KEGG: bba:Bd3766 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein YP_001543913.1 PFAM: Roadblock/LC7 family protein; KEGG: rrs:RoseRS_3912 roadblock/LC7 family protein YP_001543914.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: gvi:glr0075 sugar-non-specific nuclease NucA homolog YP_001543915.1 PFAM: proton/sugar symporter LacY; major facilitator superfamily MFS_1; KEGG: gka:GK2830 maltose permease YP_001543916.1 PFAM: Rare lipoprotein A; KEGG: rrs:RoseRS_1550 rare lipoprotein A YP_001543917.1 PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: rrs:RoseRS_2715 glutamine synthetase, catalytic region YP_001543918.1 KEGG: sat:SYN_01077 sensor proteinLuxQ; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_001543919.1 PFAM: PHA accumulation regulator DNA-binding protein; KEGG: rrs:RoseRS_2163 PHA accumulation regulator DNA-binding protein YP_001543920.1 PFAM: Patatin; KEGG: rrs:RoseRS_2164 patatin YP_001543921.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001543922.1 PFAM: TROVE domain protein; KEGG: sec:SC3451 ribonucleoprotein related-protein YP_001543923.1 KEGG: hch:HCH_03579 hypothetical protein YP_001543924.1 KEGG: rrs:RoseRS_4181 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase 35 YP_001543926.1 PFAM: extracellular solute-binding protein family 1; KEGG: pna:Pnap_0227 extracellular solute-binding protein, family 1 YP_001543927.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_0229 binding-protein-dependent transport systems inner membrane component YP_001543928.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_0230 binding-protein-dependent transport systems inner membrane component YP_001543929.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: dge:Dgeo_0572 alpha amylase, catalytic region YP_001543930.1 KEGG: sus:Acid_6257 hypothetical protein YP_001543931.1 PFAM: GCN5-related N-acetyltransferase; KEGG: deh:cbdb_A1264 acetyltransferase, GNAT family YP_001543932.1 PFAM: BioY protein; KEGG: ttj:TTHA0904 biotin biosynthesis protein BioY YP_001543934.1 PFAM: protein of unknown function DUF779; KEGG: mxa:MXAN_5039 hypothetical protein YP_001543935.1 PFAM: aldehyde dehydrogenase; KEGG: mxa:MXAN_5040 aldehyde dehydrogenase YP_001543936.1 PFAM: response regulator receiver; KEGG: rfr:Rfer_1768 multi-sensor hybrid histidine kinase YP_001543937.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: son:SO_0060 sensor histidine kinase YP_001543939.1 PFAM: metallophosphoesterase; KEGG: sco:SCO7358 hypothetical protein YP_001543940.1 KEGG: dra:DR_2380 hypothetical protein YP_001543941.1 KEGG: rrs:RoseRS_2757 hypothetical protein YP_001543942.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rrs:RoseRS_0306 hypothetical protein YP_001543943.1 PFAM: glycoside hydrolase 18; SMART: chitinase II; KEGG: rrs:RoseRS_0307 glycoside hydrolase, family 18 YP_001543944.1 PFAM: protein of unknown function DUF81; KEGG: azo:azo3987 hypothetical protein YP_001543945.1 PFAM: pseudouridine synthase; KEGG: rrs:RoseRS_2639 pseudouridine synthase YP_001543946.1 PFAM: Carbohydrate-binding CenC domain protein; KEGG: mxa:MXAN_1482 polysaccharide deacetylase domain protein YP_001543947.1 KEGG: rca:Rcas_0340 hypothetical protein YP_001543948.1 PFAM: aldo/keto reductase; KEGG: gur:Gura_4374 aldo/keto reductase YP_001543950.1 PFAM: sugar isomerase (SIS); KEGG: rrs:RoseRS_2367 glutamine--fructose-6-phosphate transaminase (isomerizing) YP_001543951.1 KEGG: sth:STH605 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_001543952.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC0535 hypothetical protein YP_001543953.1 PFAM: Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: rrs:RoseRS_3616 glycoside hydrolase, family 20 YP_001543954.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: syn:slr0531 ABC-type glucosylglycerol transport system permease YP_001543955.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: syn:slr0530 ABC-type glucosylglycerol transport system permease YP_001543956.1 PFAM: extracellular solute-binding protein family 1; KEGG: syn:slr0529 ABC-type glucosylglycerol transport system substrate-binding protein YP_001543957.1 PFAM: ROK family protein; KEGG: nca:Noca_4485 ROK family protein YP_001543958.1 PFAM: ROK family protein; KEGG: rca:Rcas_0477 ROK family protein YP_001543959.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: hch:HCH_04864 predicted carboxypeptidase YP_001543961.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMb21153 acetyltransferase YP_001543962.1 PFAM: metallophosphoesterase; KEGG: rrs:RoseRS_0680 metallophosphoesterase YP_001543964.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Forkhead-associated protein; KEGG: rrs:RoseRS_0678 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001543965.1 KEGG: mpt:Mpe_A1010 hypothetical protein YP_001543966.1 KEGG: rca:Rcas_0561 amino acid permease-associated region YP_001543967.1 KEGG: rca:Rcas_0561 amino acid permease-associated region YP_001543968.1 KEGG: rrs:RoseRS_3054 hypothetical protein YP_001543969.1 KEGG: rrs:RoseRS_3053 N-acetylmuramoyl-L-alanine amidase, family 2 YP_001543970.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001543971.1 KEGG: rrs:RoseRS_3985 metalloendopeptidase, glycoprotease; TIGRFAM: metalloendopeptidase, glycoprotease; PFAM: peptidase M22 glycoprotease YP_001543973.1 KEGG: plt:Plut_2086 lysophospholipase L2 YP_001543974.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rca:Rcas_1996 cell envelope-related transcriptional attenuator YP_001543975.1 PFAM: metallophosphoesterase; KEGG: sth:STH600 phosphoesterase, puative YP_001543976.1 KEGG: rca:Rcas_0207 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001543978.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rrs:RoseRS_2302 enoyl-CoA hydratase/isomerase YP_001543979.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: aba:Acid345_1212 3-hydroxybutyryl-CoA dehydrogenase YP_001543980.1 PFAM: phospholipase/Carboxylesterase; KEGG: pap:PSPA7_0646 hypothetical protein YP_001543982.1 PFAM: protein of unknown function UPF0074; KEGG: rha:RHA1_ro00181 possible transcriptional regulator YP_001543983.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NmrA family protein; Male sterility domain; KEGG: aba:Acid345_1741 NAD-dependent epimerase/dehydratase YP_001543984.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rca:Rcas_0439 fumarylacetoacetate (FAA) hydrolase YP_001543985.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001543986.1 KEGG: rrs:RoseRS_3909 hypothetical protein YP_001543987.1 KEGG: rca:Rcas_0260 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_001543988.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_0218 glycosyl transferase group 1 YP_001543989.1 PFAM: protein of unknown function DUF422; KEGG: rca:Rcas_1970 protein of unknown function DUF422 YP_001543990.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rpe:RPE_4376 ATPase-like protein YP_001543991.1 PFAM: response regulator receiver; KEGG: mag:amb3570 FOG: CheY-like receiver YP_001543992.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_2615 acetyltransferase, GNAT family YP_001543993.1 KEGG: ava:Ava_1029 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001543994.1 TIGRFAM: threonine synthase; PFAM: response regulator receiver; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ace:Acel_0100 threonine synthase YP_001543995.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_1307 response regulator receiver sensor signal transduction histidine kinase YP_001543996.1 PFAM: response regulator receiver; KEGG: gvi:glr1684 two-component response regulator YP_001543997.1 PFAM: Nucleotidyl transferase; KEGG: rca:Rcas_4084 nucleotidyl transferase YP_001543998.1 KEGG: rca:Rcas_4085 hypothetical protein YP_001543999.1 PFAM: extracellular solute-binding protein family 5; KEGG: deb:DehaBAV1_0943 extracellular solute-binding protein, family 5 YP_001544000.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: deb:DehaBAV1_0942 nickel-transporting ATPase YP_001544001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH130 oligopeptide ABC transporter permease YP_001544002.1 KEGG: rrs:RoseRS_0418 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001544003.1 KEGG: rca:Rcas_1064 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001544004.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: mta:Moth_1625 selenide, water dikinase YP_001544005.1 PFAM: PKD domain containing protein; KEGG: sdn:Sden_0007 Na-Ca exchanger/integrin-beta4 YP_001544006.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rca:Rcas_1461 arginase YP_001544007.1 PFAM: NHL repeat containing protein; KEGG: gvi:gll4002 unknown protein YP_001544008.1 PFAM: PKD domain containing protein; KEGG: dge:Dgeo_2672 glycosyl hydrolase 98, carbohydrate binding module YP_001544009.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: amt:Amet_3292 ABC transporter related YP_001544010.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_0130 ABC transporter, permease YP_001544011.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_2069 binding-protein-dependent transport systems inner membrane component YP_001544012.1 KEGG: stp:Strop_4231 hypothetical protein YP_001544013.1 PFAM: SNARE associated Golgi protein; KEGG: rrs:RoseRS_3144 hypothetical protein YP_001544014.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cyb:CYB_2402 CDP-alcohol phosphatidyltransferase YP_001544015.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: gvi:glr3235 dTDP-glucose 4-6-dehydratase YP_001544016.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: yen:YE1303 hypothetical protein YP_001544017.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: sen:SACE_3828 amino acid decarboxylase,pyridoxal-dependent protein YP_001544018.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cmi:CMM_0251 transcriptional regulator, LacI-family YP_001544019.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PB00115 sugar ABC transporter, substrate-binding protein YP_001544020.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1586 ABC transporter membrane component YP_001544021.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1587 sugar permeases YP_001544022.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides YP_001544023.1 catalyzes the interconversion of D-xylose to D-xylulose YP_001544024.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rca:Rcas_3165 acyl-CoA dehydrogenase domain protein YP_001544025.1 PFAM: PKD domain containing protein; KEGG: mkm:Mkms_0794 PKD domain containing protein YP_001544026.1 PFAM: major facilitator superfamily MFS_1; KEGG: rca:Rcas_4328 major facilitator superfamily MFS_1 YP_001544027.1 KEGG: sbl:Sbal_1818 hypothetical protein YP_001544028.1 KEGG: mxa:MXAN_5677 hypothetical protein YP_001544029.1 KEGG: mxa:MXAN_5676 hypothetical protein YP_001544030.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tel:tlr0963 probable cell division inhibitor minD YP_001544031.1 KEGG: tel:tlr0963 probable cell division inhibitor minD YP_001544032.1 KEGG: ppf:Pput_2512 major facilitator superfamily MFS_1 YP_001544034.1 PFAM: histidine kinase HAMP region domain protein; KEGG: mhu:Mhun_2469 histidine kinase, HAMP region YP_001544035.1 PFAM: alpha/beta hydrolase fold; KEGG: rca:Rcas_2065 cyclic nucleotide-binding protein YP_001544038.1 KEGG: rha:RHA1_ro00868 hypothetical protein YP_001544039.1 KEGG: bbr:BB1298 hypothetical protein YP_001544040.1 KEGG: syd:Syncc9605_1306 hypothetical protein YP_001544041.1 TIGRFAM: glycogen debranching enzyme, PFAM: Amylo-alpha-16-glucosidase; KEGG: gvi:gll3997 hypothetical protein YP_001544042.1 KEGG: rrs:RoseRS_0521 hypothetical protein YP_001544043.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0520 multi-sensor signal transduction histidine kinase YP_001544044.1 PFAM: response regulator receiver; KEGG: rca:Rcas_1272 response regulator receiver protein YP_001544045.1 PFAM: domain of unknown function DUF1745; KEGG: pth:PTH_0311 hypothetical protein YP_001544046.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; GAF domain protein; KEGG: rrs:RoseRS_2566 anti-sigma-factor antagonist YP_001544047.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_0205 response regulator receiver protein YP_001544048.1 KEGG: dge:Dgeo_0791 hypothetical protein YP_001544049.1 KEGG: dge:Dgeo_0791 hypothetical protein YP_001544050.1 KEGG: rrs:RoseRS_3167 hypothetical protein YP_001544051.1 PFAM: protein of unknown function DUF909; KEGG: xcb:XC_3874 hypothetical protein YP_001544052.1 KEGG: tel:tll2147 N-methylpurine-DNA glycosirase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG) YP_001544053.1 KEGG: shm:Shewmr7_0521 hypothetical protein YP_001544054.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: tte:TTE1755 DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) YP_001544055.1 PFAM: glycoside hydrolase 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ava:Ava_4479 glycoside hydrolase, family 13-like YP_001544056.1 KEGG: psa:PST_1471 type I restriction-modification system, S subunit YP_001544057.1 PFAM: restriction modification system DNA specificity domain; KEGG: ecs:ECs5306 type I restriction-modification enzyme S subunit YP_001544058.1 PFAM: N-6 DNA methylase; KEGG: ana:alr3620 type I restriction modification enzyme M subunit YP_001544059.1 PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_2499 DEAD/DEAH box helicase-like YP_001544060.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: nfa:nfa51240 transcriptional regulator YP_001544061.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_0340 possible lyase YP_001544062.1 SMART: Protein-tyrosine phosphatase, catalytic; KEGG: sfu:Sfum_3916 dual specificity protein phosphatase YP_001544063.1 PFAM: helix-turn-helix domain protein; KEGG: bur:Bcep18194_B0324 transcriptional regulator, XRE family YP_001544064.1 KEGG: pla:Plav_0589 hypothetical protein YP_001544065.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001544067.1 PFAM: regulatory protein Crp; KEGG: pmf:P9303_24561 global nitrogen regulatory protein, CRP family of transcriptional regulators YP_001544069.1 KEGG: rca:Rcas_3793 hypothetical protein YP_001544070.1 KEGG: rca:Rcas_3794 hypothetical protein YP_001544071.1 PFAM: blue (type 1) copper domain protein; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: tfu:Tfu_2794 hypothetical protein YP_001544072.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rca:Rcas_3425 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_001544073.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rca:Rcas_3427 transcriptional regulator, Crp/Fnr family YP_001544074.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rxy:Rxyl_2619 cupin 2, conserved barrel YP_001544075.1 KEGG: dar:Daro_0998 hypothetical protein YP_001544076.1 PFAM: peptidase C2 calpain; KEGG: gbe:GbCGDNIH1_1546 hypothetical membrane spanning protein YP_001544078.1 PFAM: Tetratricopeptide TPR_2 repeat protein YP_001544079.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bha:BH0969 SNF2 helicase YP_001544080.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: yli:YALI0C01111g hypothetical protein YP_001544081.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_2188 methyltransferase type 11 YP_001544082.1 KEGG: gsu:GSU1690 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_001544083.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001544084.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase YP_001544085.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rxy:Rxyl_2613 two component transcriptional regulator, LuxR family YP_001544086.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: mxa:MXAN_2845 conserved hypothetical protein TIGR00257 YP_001544087.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_6320 hypothetical protein YP_001544088.1 KEGG: rca:Rcas_0340 hypothetical protein YP_001544089.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: rca:Rcas_3481 holo-acyl-carrier-protein synthase YP_001544090.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_001544091.1 PFAM: response regulator receiver; KEGG: rca:Rcas_2890 response regulator receiver protein YP_001544092.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_0128 PAS/PAC sensor protein YP_001544093.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_2851 PAS/PAC sensor protein YP_001544094.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mem:Memar_0655 D-alanine--D-alanine ligase YP_001544095.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rca:Rcas_2074 amine oxidase YP_001544097.1 PFAM: transposase IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family YP_001544099.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2 YP_001544103.1 KEGG: rca:Rcas_0212 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_001544104.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: bce:BC2599 holin YP_001544106.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sun:SUN_2438 cytosine-specific methyltransferase YP_001544107.1 KEGG: ngo:NGO0363 stress-sensitive restriction system protein YP_001544108.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: dra:DR_A0057 TerF-related protein YP_001544116.1 PFAM: response regulator receiver; KEGG: gka:GK0908 two-component response regulator YP_001544118.1 PFAM: response regulator receiver; KEGG: pfl:PFL_4997 DNA-binding response regulator YP_001544121.1 PFAM: Roadblock/LC7 family protein YP_001544122.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rca:Rcas_2074 amine oxidase YP_001544133.1 KEGG: sma:SAV5536 type II restriction-modification system DNA cytosine-specific methylase YP_001544138.1 KEGG: sil:SPO1926 hypothetical protein YP_001544140.1 KEGG: mgr:MGG_11485 hypothetical protein YP_001544142.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: cbf:CLI_1889 phage tail tape measure protein, TP901 family YP_001544151.1 KEGG: lca:LSEI_1925 hypothetical protein YP_001544155.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; KEGG: art:Arth_1364 phage head morphogenesis protein, SPP1 gp7 family YP_001544157.1 KEGG: aba:Acid345_4366 hypothetical protein YP_001544161.1 KEGG: bvu:BVU_2872 hypothetical protein YP_001544166.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_4193 anti-sigma-factor antagonist YP_001544167.1 KEGG: rca:Rcas_0340 hypothetical protein YP_001544168.1 PFAM: helix-turn-helix domain protein YP_001544169.1 PFAM: helix-turn-helix domain protein YP_001544170.1 PFAM: helix-turn-helix domain protein YP_001544172.1 PFAM: helix-turn-helix domain protein YP_001544175.1 SMART: AAA ATPase; KEGG: nfa:nfa14870 hypothetical protein YP_001544176.1 KEGG: tte:TTE2114 hypothetical protein YP_001544177.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1147 IstB domain protein ATP-binding protein YP_001544181.1 KEGG: rrs:RoseRS_3899 hypothetical protein YP_001544183.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: rrs:RoseRS_1979 aspartyl-tRNA synthetase YP_001544184.1 KEGG: ret:RHE_CH03137 hypothetical protein YP_001544185.1 PFAM: band 7 protein; KEGG: swi:Swit_0005 band 7 protein YP_001544186.1 PFAM: Dak phosphatase; KEGG: smd:Smed_3826 dihydroxyacetone kinase, L subunit YP_001544187.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL0062 drug resistance transporter, EmrB/QacA family YP_001544188.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_0702 transcriptional regulatory protein, AraC-type YP_001544189.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_2499 protein serine phosphatase with GAF(s) sensor(s) YP_001544190.1 PFAM: glycoside hydrolase 9; Carbohydrate-binding CenC domain protein; glycoside hydrolase 9 domain protein Ig domain protein; KEGG: tfu:Tfu_1627 cellulase, cellulose 1,4-beta-cellobiosidase YP_001544191.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tfu:Tfu_1751 methyltransferase YP_001544192.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMc02271 ribitol type dehydrogenase YP_001544193.1 PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rca:Rcas_1196 protein serine phosphatase with GAF(s) sensor(s) YP_001544194.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_2161 anti-sigma-factor antagonist YP_001544195.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_1194 anti-sigma-factor antagonist YP_001544196.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: rde:RD1_0206 hypothetical protein YP_001544197.1 PFAM: regulatory protein TetR; KEGG: fjo:Fjoh_4298 transcriptional regulator, TetR family YP_001544198.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: ava:Ava_3981 NAD-dependent epimerase/dehydratase YP_001544199.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: bay:RBAM_029340 YuxL YP_001544200.1 PFAM: Ricin B lectin; glycoside hydrolase 81; KEGG: tfu:Tfu_2130 hypothetical protein YP_001544202.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Tetratricopeptide domain protein; KEGG: ret:RHE_CH02138 adenylate/guanylate cyclase YP_001544203.1 PFAM: glycoside hydrolase 3 domain protein; KEGG: csc:Csac_1102 glycoside hydrolase, family 3 domain protein YP_001544204.1 KEGG: rrs:RoseRS_0370 hypothetical protein YP_001544205.1 PFAM: Cyanovirin-N domain protein; KEGG: xau:Xaut_0069 Cyanovirin-N domain protein YP_001544206.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: dge:Dgeo_2236 transcriptional regulator, AraC family YP_001544207.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rca:Rcas_1052 cupin 2 conserved barrel domain protein YP_001544208.1 KEGG: cbe:Cbei_3715 hypothetical protein YP_001544210.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ncr:NCU05160.1 hypothetical protein YP_001544211.1 PFAM: GCN5-related N-acetyltransferase YP_001544213.1 TIGRFAM: conserved repeat domain; YD repeat protein; KEGG: det:DET1472 NHL/rhs/YD repeat protein YP_001544214.1 PFAM: hypothetical protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001544215.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: rrs:RoseRS_0189 SsrA-binding protein YP_001544216.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: rca:Rcas_4349 orotidine 5'-phosphate decarboxylase YP_001544217.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0412 multi-sensor signal transduction histidine kinase YP_001544218.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_2988 GCN5-related N-acetyltransferase YP_001544219.1 PFAM: major facilitator superfamily MFS_1; KEGG: acr:Acry_2064 major facilitator superfamily MFS_1 YP_001544221.1 PFAM: cell cycle protein; KEGG: rca:Rcas_1647 cell cycle protein YP_001544222.1 KEGG: fal:FRAAL4022 two component sensor serine/threonine kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; protein kinase; GAF domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase YP_001544223.1 KEGG: det:DET0450 isocitrate dehydrogenase YP_001544224.1 KEGG: ana:alr7249 unknown protein YP_001544225.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: det:DET0450 isocitrate dehydrogenase YP_001544226.1 KEGG: rca:Rcas_1159 hypothetical protein YP_001544227.1 KEGG: rca:Rcas_2971 cysteine desulfurase; TIGRFAM: cysteine desulfurase; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_001544228.1 PFAM: glycosyl transferase 2; KEGG: pth:PTH_1466 glycosyltransferases YP_001544229.1 PFAM: protein of unknown function DUF159; KEGG: aba:Acid345_3891 protein of unknown function DUF159 YP_001544230.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_2730 adenylate/guanylate cyclase with TPR repeats YP_001544231.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0161 drug resistance transporter, EmrB/QacA subfamily YP_001544232.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_3728 bifunctional deaminase-reductase domain protein YP_001544233.1 KEGG: ttj:TTHB183 hypothetical protein YP_001544234.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sme:SMc02891 oxidoreductase transmembrane protein YP_001544235.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: ava:Ava_3668 transferase hexapeptide repeat YP_001544236.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: rca:Rcas_0048 TIM-barrel protein, nifR3 family YP_001544237.1 PFAM: Protein of unknown function DUF1790; KEGG: rba:RB6282 hypothetical protein YP_001544238.1 PFAM: TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: rca:Rcas_1035 sodium/hydrogen exchanger YP_001544239.1 PFAM: protein of unknown function DUF214; KEGG: rca:Rcas_1858 protein of unknown function DUF214 YP_001544240.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2431 ABC transporter related YP_001544241.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rrs:RoseRS_0286 heat shock protein DnaJ domain protein YP_001544242.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pth:PTH_1618 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001544244.1 KEGG: rca:Rcas_4066 hypothetical protein YP_001544245.1 KEGG: rca:Rcas_3600 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001544246.1 KEGG: rrs:RoseRS_3371 PAS/PAC sensor protein; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001544248.1 KEGG: rca:Rcas_2152 hypothetical protein YP_001544249.1 PFAM: protein of unknown function DUF107; KEGG: psa:PST_3890 hypothetical protein YP_001544250.1 PFAM: band 7 protein; KEGG: rrs:RoseRS_1337 band 7 protein YP_001544251.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sen:SACE_0455 transcriptional regulatory protein (probably LacI-family) YP_001544252.1 PFAM: major facilitator superfamily MFS_1; KEGG: chu:CHU_1068 transport protein, MFS family YP_001544253.1 KEGG: ava:Ava_3040 hypothetical protein YP_001544254.1 PFAM: DSBA oxidoreductase; KEGG: rca:Rcas_3327 DsbA oxidoreductase YP_001544256.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: fra:Francci3_1516 transcriptional regulator, MerR family YP_001544258.1 PFAM: major facilitator superfamily MFS_1; KEGG: bat:BAS1684 transporter YP_001544259.1 PFAM: thioesterase superfamily protein; KEGG: pth:PTH_2715 hypothetical protein YP_001544260.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_0960 two component transcriptional regulator, winged helix family YP_001544261.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_0959 integral membrane sensor signal transduction histidine kinase YP_001544262.1 KEGG: mhu:Mhun_2816 hypothetical protein YP_001544263.1 KEGG: mhu:Mhun_2817 hypothetical protein YP_001544264.1 PFAM: Spore coat protein CotH; KEGG: mhu:Mhun_2822 spore coat assembly protein-like YP_001544265.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr7566 oxidoreductase YP_001544266.1 KEGG: btl:BALH_3066 hypothetical protein YP_001544267.1 PFAM: regulatory protein TetR; KEGG: afw:Anae109_3254 transcriptional regulator, TetR family YP_001544269.1 PFAM: helix-turn-helix domain protein; KEGG: nar:Saro_0207 transcriptional regulator, XRE family YP_001544270.1 KEGG: pap:PSPA7_1026 hypothetical protein YP_001544271.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: rrs:RoseRS_0219 formate--tetrahydrofolate ligase YP_001544272.1 PFAM: monooxygenase FAD-binding; KEGG: mxa:MXAN_4302 FAD-binding domain protein YP_001544273.1 PFAM: NUDIX hydrolase; KEGG: ooe:OEOE_1181 ADP-ribose pyrophosphatase YP_001544274.1 PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_PE00049 adenylate cyclase YP_001544275.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro00434 probable NADPH:quinone reductase YP_001544276.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sde:Sde_2978 zinc-binding oxidoreductase YP_001544278.1 PFAM: regulatory protein LuxR; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_4327 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_001544279.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_1238 GCN5-related N-acetyltransferase YP_001544280.1 PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein YP_001544281.1 PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: stp:Strop_3365 alpha/beta hydrolase fold YP_001544282.1 KEGG: sen:SACE_6399 protein of unknown function DUF899,thioredoxin-like YP_001544283.1 KEGG: ana:alr0079 esterase YP_001544284.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: eli:ELI_02990 flavin mononucleotide binding protein YP_001544285.1 KEGG: rrs:RoseRS_4406 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_001544286.1 PFAM: beta-lactamase; KEGG: sus:Acid_6352 beta-lactamase YP_001544287.1 KEGG: hch:HCH_04697 hypothetical protein YP_001544289.1 PFAM: tryptophan 23-dioxygenase; KEGG: ade:Adeh_3165 tryptophan 2,3-dioxygenase YP_001544290.1 KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein YP_001544291.1 PFAM: helix-turn-helix HxlR type; KEGG: sen:SACE_1244 transcriptional regulator YP_001544292.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: bce:BC3158 pyrimidine reductase YP_001544293.1 KEGG: bbt:BBta_6235 hypothetical protein YP_001544294.1 PFAM: SH3 type 3 domain protein YP_001544295.1 KEGG: sus:Acid_2431 hypothetical protein YP_001544296.1 KEGG: amt:Amet_4270 transcriptional antiterminator, BglG YP_001544297.1 KEGG: gka:GK1948 PTS system, mannitol-permease II, BC component; TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system EIIC YP_001544298.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: bay:RBAM_004230 MtlA YP_001544299.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: cvi:CV_3052 phosphotransferase system YP_001544300.1 TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: psa:PST_0988 phosphotransferase system, fructose-specific EI/HPr/EIIA component YP_001544301.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: yen:YE0810 L-sorbose 1-phosphate reductase YP_001544302.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2150 glycosyl transferase, group 1 YP_001544303.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: sru:SRU_2678 HD domain protein YP_001544305.1 TIGRFAM: RNA polymerase sigma-70 YP_001544306.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: syn:sll0499 hypothetical protein YP_001544308.1 KEGG: sth:STH2945 hypothetical protein YP_001544309.1 PFAM: Domain of unknown function DUF1858; KEGG: nis:NIS_1810 hypothetical protein YP_001544310.1 KEGG: sus:Acid_2929 major facilitator superfamily MFS_1 YP_001544311.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: dge:Dgeo_2272 transposase, IS891/IS1136/IS1341 YP_001544312.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sus:Acid_2926 Rieske (2Fe-2S) domain protein YP_001544314.1 KEGG: sus:Acid_2929 major facilitator superfamily MFS_1 YP_001544315.1 KEGG: rxy:Rxyl_1204 major facilitator superfamily MFS_1 YP_001544316.1 PFAM: DinB family protein; KEGG: bsu:BG12243 similar to nuclease inhibitor YP_001544320.1 KEGG: sru:SRU_2835 polyhydroxyalkanoate granule-associated protein PhaF YP_001544321.1 KEGG: rrs:RoseRS_4398 hypothetical protein YP_001544322.1 PFAM: protein of unknown function DUF152; KEGG: drm:Dred_0706 protein of unknown function DUF152 YP_001544323.1 PFAM: alanine racemase domain protein; KEGG: rrs:RoseRS_3251 alanine racemase domain protein YP_001544324.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001544325.1 KEGG: dge:Dgeo_2473 hypothetical protein YP_001544326.1 PFAM: TatD-related deoxyribonuclease; KEGG: dge:Dgeo_2472 TatD-related deoxyribonuclease YP_001544327.1 KEGG: dge:Dgeo_2471 hypothetical protein YP_001544328.1 PFAM: UbiA prenyltransferase; KEGG: dge:Dgeo_2470 UbiA prenyltransferase YP_001544329.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ana:all0415 hypothetical protein YP_001544330.1 PFAM: aminoglycoside phosphotransferase; KEGG: dge:Dgeo_2397 aminoglycoside phosphotransferase YP_001544331.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bch:Bcen2424_5844 acyl-CoA dehydrogenase domain protein YP_001544332.1 KEGG: rrs:RoseRS_1631 WD40 domain protein beta propeller YP_001544333.1 PFAM: diacylglycerol kinase catalytic region; KEGG: rca:Rcas_2259 diacylglycerol kinase catalytic region YP_001544334.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rrs:RoseRS_1633 two component transcriptional regulator, LuxR family YP_001544335.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: rrs:RoseRS_1634 maf protein YP_001544336.1 PFAM: integrase; KEGG: lga:LGAS_0884 integrase YP_001544338.1 PFAM: (2R)-phospho-3-sulfolactate synthase ComA; KEGG: mja:MJ0255 (2R)-phospho-3-sulfolactate synthase YP_001544339.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bja:bll7236 threonine synthase YP_001544340.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_2107 methyltransferase type 11 YP_001544341.1 PFAM: 2-phosphosulfolactate phosphatase; KEGG: cno:NT01CX_0616 probable 2-phosphosulfolactate phosphatase YP_001544343.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_1611 amino acid adenylation YP_001544344.1 PFAM: Thioesterase; phosphopantetheine-binding; KEGG: ava:Ava_4101 amino acid adenylation YP_001544345.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_1611 amino acid adenylation YP_001544346.1 PFAM: major facilitator superfamily MFS_1; KEGG: dge:Dgeo_1968 major facilitator superfamily MFS_1 YP_001544347.1 KEGG: mes:Meso_4532 hypothetical protein YP_001544348.1 KEGG: fra:Francci3_3463 hypothetical protein YP_001544349.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rca:Rcas_2389 binding-protein-dependent transport systems inner membrane component YP_001544350.1 PFAM: NMT1/THI5 like domain protein; KEGG: rrs:RoseRS_2762 membrane lipoprotein lipid attachment site YP_001544351.1 KEGG: mxa:MXAN_3813 hypothetical protein YP_001544352.1 KEGG: rrs:RoseRS_1231 hypothetical protein YP_001544353.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_1230 glycosyl transferase, group 1 YP_001544354.1 PFAM: protein of unknown function DUF1486; KEGG: bte:BTH_II1744 hypothetical protein YP_001544355.1 PFAM: ATP-cone domain protein; KEGG: rca:Rcas_3251 ATP-cone domain protein YP_001544356.1 KEGG: rrs:RoseRS_0988 restriction endonuclease YP_001544357.1 KEGG: gka:GK2294 riboflavin synthasebeta subunit; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_001544358.1 PFAM: Beta-ketoacyl synthase; KEGG: rrs:RoseRS_4603 beta-ketoacyl synthase YP_001544359.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: rrs:RoseRS_4602 ribonuclease III YP_001544362.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sth:STH2043 RNA polymerase ECF-type sigma factor YP_001544363.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rca:Rcas_1643 HAD-superfamily hydrolase, subfamily IIA YP_001544364.1 PFAM: glycosyl transferase 2; KEGG: rca:Rcas_0375 glycosyl transferase 2 YP_001544365.1 PFAM: esterase; KEGG: ppd:Ppro_1478 esterase YP_001544366.1 PFAM: polysaccharide deacetylase; KEGG: rrs:RoseRS_2358 hypothetical protein YP_001544367.1 KEGG: art:Arth_0117 hypothetical protein YP_001544368.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001544369.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001544370.1 PFAM: regulatory protein ArsR; KEGG: bay:RBAM_007410 hypothetical protein YP_001544371.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rxy:Rxyl_0160 two component transcriptional regulator, LuxR family YP_001544372.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: gvi:glr3986 similar to two-component sensor histidine kinase YP_001544373.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rrs:RoseRS_0267 efflux transporter, RND family, MFP subunit YP_001544374.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0694 ABC transporter related YP_001544375.1 PFAM: protein of unknown function DUF214; KEGG: dsy:DSY3655 hypothetical protein YP_001544376.1 PFAM: extracellular solute-binding protein family 5; KEGG: dra:DR_1290 extracellular solute-binding protein, family 5 YP_001544377.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tth:TTC0972 dipeptide transport system permease dppB YP_001544378.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dra:DR_0958 peptide ABC transporter, permease YP_001544379.1 PFAM: helix-turn-helix domain protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001544380.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_0205 response regulator receiver protein YP_001544381.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: lic:LIC10862 adenylate/guanylate cyclase YP_001544383.1 KEGG: oih:OB0226 mevalonate diphosphate decarboxylase; TIGRFAM: diphosphomevalonate decarboxylase; PFAM: GHMP kinase YP_001544384.1 TIGRFAM: sortase; PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_4120 hypothetical protein YP_001544385.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rrs:RoseRS_2749 tetratricopeptide TPR_2 repeat protein YP_001544386.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rca:Rcas_3605 methyltransferase type 11 YP_001544389.1 KEGG: ava:Ava_4013 hypothetical protein YP_001544390.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_0427 GCN5-related N-acetyltransferase YP_001544391.1 PFAM: heat shock protein Hsp20; KEGG: maq:Maqu_0052 heat shock protein HSP20 YP_001544392.1 KEGG: afw:Anae109_2098 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001544393.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_4098 anti-sigma-factor antagonist YP_001544394.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rrs:RoseRS_3289 anti-sigma regulatory factor, serine/threonine protein kinase YP_001544395.1 KEGG: rrs:RoseRS_3290 anti-sigma regulatory factor, serine/threonine protein kinase YP_001544396.1 PFAM: YaeQ family protein; KEGG: nfa:nfa11840 hypothetical protein YP_001544397.1 PFAM: glycoside hydrolase 26; KEGG: cth:Cthe_2811 glycoside hydrolase, family 26 YP_001544398.1 KEGG: rrs:RoseRS_0614 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease 2 YP_001544399.1 KEGG: rca:Rcas_0548 hypothetical protein YP_001544400.1 PFAM: protein of unknown function UPF0150; KEGG: pth:PTH_2874 hypothetical protein YP_001544401.1 KEGG: sdn:Sden_1479 hypothetical protein YP_001544403.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: chy:CHY_2045 phosphate transport system regulatory protein PhoU YP_001544404.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: det:DET0142 phosphate transport system regulatory protein PhoU YP_001544405.1 PFAM: protein of unknown function DUF323; KEGG: rca:Rcas_4092 protein of unknown function DUF323 YP_001544406.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: rca:Rcas_1691 competence protein ComEA helix-hairpin-helix repeat protein YP_001544407.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: sfu:Sfum_2529 2'-5' RNA ligase YP_001544408.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rrs:RoseRS_2669 NADH/ubiquinone/plastoquinone (complex I) YP_001544409.1 KEGG: rrs:RoseRS_2670 hypothetical protein YP_001544410.1 KEGG: rrs:RoseRS_2671 hypothetical protein YP_001544411.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: rca:Rcas_2740 NADH-ubiquinone oxidoreductase chain 49kDa YP_001544412.1 PFAM: protein of unknown function DUF81; KEGG: mxa:MXAN_4321 hypothetical protein YP_001544413.1 PFAM: Rhodanese domain protein; KEGG: rca:Rcas_1937 rhodanese domain protein YP_001544414.1 PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: gka:GK2088 hypothetical protein YP_001544415.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_2793 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001544419.1 KEGG: rrs:RoseRS_1205 hypothetical protein YP_001544420.1 PFAM: Cna B domain protein; KEGG: ana:all1696 similar to fibrinogen-binding protein YP_001544421.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001544422.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: bld:BLi00340 Mpr YP_001544423.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sth:STH2458 glycerophosphodiester phosphodiesterase YP_001544425.1 KEGG: rrs:RoseRS_3635 hypothetical protein YP_001544426.1 KEGG: rrs:RoseRS_3636 hypothetical protein YP_001544427.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0954 acetyltransferase YP_001544428.1 PFAM: alpha/beta hydrolase fold; KEGG: mva:Mvan_2148 alpha/beta hydrolase fold YP_001544429.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pde:Pden_2377 short-chain dehydrogenase/reductase SDR YP_001544430.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pau:PA14_10740 spermidine acetyltransferase YP_001544431.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bha:BH3875 hypothetical protein YP_001544432.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_0304 rarD protein, chloamphenicol sensitive YP_001544433.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_2373 PAS/PAC sensor protein YP_001544435.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_1164 ABC transporter related YP_001544436.1 PFAM: regulatory protein GntR HTH; KEGG: ckl:CKL_0385 transcriptional regulator YP_001544437.1 PFAM: cellulose-binding family II; KEGG: ani:AN7366.2 hypothetical protein YP_001544438.1 KEGG: kra:Krad_2652 DoxX family protein YP_001544439.1 PFAM: NADPH-dependent FMN reductase; KEGG: pde:Pden_0330 NADPH-dependent FMN reductase YP_001544440.1 PFAM: regulatory protein TetR; KEGG: rxy:Rxyl_1792 transcriptional regulator, TetR family YP_001544442.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rca:Rcas_0013 phospholipid/glycerol acyltransferase YP_001544443.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: nca:Noca_0486 NAD-dependent epimerase/dehydratase YP_001544444.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rrs:RoseRS_0080 death-on-curing family protein YP_001544445.1 KEGG: rrs:RoseRS_0079 hypothetical protein YP_001544446.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001544447.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001544450.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: rpe:RPE_2167 DEAD/DEAH box helicase domain protein YP_001544451.1 PFAM: NERD domain protein; KEGG: mca:MCA0729 hypothetical protein YP_001544452.1 PFAM: protein of unknown function DUF1501; KEGG: aba:Acid345_2868 protein of unknown function (DUF1501) YP_001544453.1 PFAM: Protein of unknown function DUF1800; KEGG: mxa:MXAN_6410 hypothetical protein YP_001544454.1 PFAM: aldo/keto reductase; KEGG: pat:Patl_1373 aldo/keto reductase YP_001544456.1 KEGG: pfo:Pfl_0508 hypothetical protein YP_001544458.1 PFAM: aldo/keto reductase; KEGG: dra:DR_2317 potassium channel, beta subunit YP_001544459.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: xcb:XC_2544 general stress protein YP_001544462.1 KEGG: rrs:RoseRS_0565 cobalamin (vitamin B12) biosynthesis CbiX protein YP_001544463.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rca:Rcas_1775 AMP-dependent synthetase and ligase YP_001544464.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001544465.1 PFAM: permease; KEGG: bsu:BG12016 hypothetical protein YP_001544466.1 KEGG: ava:Ava_3209 hypothetical protein YP_001544468.1 PFAM: ATP-NAD/AcoX kinase; KEGG: cbf:CLI_1709 acetoin catabolism protein X YP_001544469.1 PFAM: protein of unknown function DUF951; KEGG: rca:Rcas_1622 protein of unknown function DUF951 YP_001544470.1 KEGG: mem:Memar_1824 flavodoxin YP_001544471.1 PFAM: NmrA family protein; KEGG: stp:Strop_2997 NmrA family protein YP_001544472.1 PFAM: regulatory protein MerR; KEGG: ana:all0345 transcriptional regulator YP_001544473.1 PFAM: protein of unknown function DUF323; KEGG: mdo:100022619 hypothetical protein LOC100022619 YP_001544475.1 KEGG: sco:SCO4826 hypothetical protein YP_001544476.1 PFAM: Integral membrane protein TerC; KEGG: gvi:glr4409 transmembrane transport protein YP_001544478.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_3454 tetratricopeptide TPR_4 YP_001544480.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein YP_001544481.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_0205 response regulator receiver protein YP_001544482.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: syf:Synpcc7942_0970 phytoene dehydrogenase-like YP_001544483.1 PFAM: Inorganic pyrophosphatase; KEGG: mth:MTH263 inorganic pyrophosphatase YP_001544484.1 KEGG: aba:Acid345_4298 2-nitropropane dioxygenase, NPD YP_001544486.1 PFAM: regulatory protein MerR; KEGG: sco:SCO4477 MerR-family transcriptional regulatory protein YP_001544487.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcl:ABC0846 excinuclease ABC subunit A YP_001544488.1 KEGG: rrs:RoseRS_1705 hypothetical protein YP_001544489.1 TIGRFAM: 4-hydroxybenzoate polyprenyltransferase, PFAM: UbiA prenyltransferase; KEGG: mta:Moth_0096 4-hydroxybenzoate polyprenyltransferase YP_001544490.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001544491.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rca:Rcas_1232 ABC transporter related YP_001544492.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rxy:Rxyl_1174 binding-protein-dependent transport systems inner membrane component YP_001544493.1 PFAM: extracellular solute-binding protein family 1; KEGG: rxy:Rxyl_1175 extracellular solute-binding protein, family 1 YP_001544495.1 KEGG: ana:alr7249 unknown protein YP_001544496.1 proposed role in polysaccahride synthesis YP_001544497.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: stp:Strop_3507 alcohol dehydrogenase GroES domain protein YP_001544498.1 KEGG: tcx:Tcr_1353 hypothetical protein YP_001544499.1 PFAM: regulatory protein LuxR; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_4327 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_001544502.1 KEGG: pla:Plav_1313 hypothetical protein YP_001544503.1 PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rrs:RoseRS_2398 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_001544504.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001544505.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: rca:Rcas_3079 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_001544506.1 PFAM: transport system permease; KEGG: rxy:Rxyl_0414 transport system permease YP_001544507.1 PFAM: transport system permease; KEGG: ana:all2585 iron(III) dicitrate transport system permease YP_001544508.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0416 ABC transporter related YP_001544509.1 PFAM: periplasmic binding protein; KEGG: bha:BH1037 iron (III) dicitrate transport system substrate-binding protein YP_001544510.1 PFAM: periplasmic binding protein; KEGG: bha:BH1037 iron (III) dicitrate transport system substrate-binding protein YP_001544511.1 KEGG: atc:AGR_L_2304 hypothetical protein YP_001544512.1 PFAM: OsmC family protein; KEGG: mva:Mvan_1525 OsmC family protein YP_001544513.1 PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: mjl:Mjls_1203 transcriptional regulator, TrmB YP_001544514.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001544515.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pth:PTH_0973 uroporphyrinogen-III methylase and uroporphyrinogen-III synthase YP_001544516.1 TIGRFAM: siroheme synthase; KEGG: gur:Gura_0362 siroheme synthase YP_001544517.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bcy:Bcer98_1146 ferredoxin--nitrite reductase YP_001544518.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis YP_001544519.1 KEGG: rxy:Rxyl_0966 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase YP_001544520.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: rca:Rcas_0330 phosphoadenosine phosphosulfate reductase YP_001544521.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_001544522.1 PFAM: regulatory protein TetR; KEGG: sco:SCO0310 TetR-family transcriptional regulator YP_001544523.1 KEGG: lic:LIC12561 hypothetical protein YP_001544525.1 PFAM: DNA polymerase beta domain protein region; KEGG: bbt:BBta_2474 exported protein of unknown function YP_001544527.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pth:PTH_2269 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog YP_001544528.1 PFAM: diacylglycerol kinase catalytic region; KEGG: rrs:RoseRS_2518 diacylglycerol kinase, catalytic region YP_001544529.1 PFAM: protein of unknown function DUF205; KEGG: jan:Jann_3906 protein of unknown function DUF205 YP_001544530.1 KEGG: rrs:RoseRS_2129 hypothetical protein YP_001544531.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_1488 glycosyl transferase group 1 YP_001544532.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_1489 glycosyl transferase group 1 YP_001544533.1 catalyzes the interconversion of D-xylose to D-xylulose YP_001544534.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: rca:Rcas_2620 xylulokinase YP_001544536.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: pmy:Pmen_1508 NADP oxidoreductase, coenzyme F420-dependent YP_001544537.1 KEGG: rca:Rcas_3328 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases YP_001544540.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rca:Rcas_0907 transcriptional regulator, LacI family YP_001544541.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:pRL90064 hypothetical protein YP_001544542.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rca:Rcas_2654 UDP-glucose 4-epimerase YP_001544543.1 KEGG: dar:Daro_1078 thioesterase superfamily YP_001544544.1 KEGG: rci:RCIX1658 hypothetical protein YP_001544548.1 KEGG: hsa:729762 hypothetical protein LOC729762 YP_001544549.1 KEGG: rci:RCIX1665 hypothetical protein YP_001544550.1 KEGG: tva:TVAG_307050 Repeated sequence found in lipoprotein LPP containing protein Pfam: Myosin_tail_1 PspA_IM30 V-ATPase_G DUF869 DUF593 DUF16 ATG16 KMP11 KAR9 Laminin_I Histone_HNS Mod_r Coagulase DegS DUF812 SF-assemblin DUF881 DUF1417 SurA_N MCPsignal AIP3 Lipoprotein_7 COG6 Apolipoprotein Prosystemin Cpn60_TCP1 FliD_C NPV_P10 DUF908 HalX DUF904 EzrA MbeB_N DUF1978 Filament DUF827 Spectrin Sec8_exocyst Prefoldin_2 Binary_toxA Syntaxin DUF1754 SH3BP5 TolA Tup_N CagA Baculo_PEP_C RmuC Laminin_II Reo_sigma1 Vps5 Erp_C FCH Hp0062 Syntaxin-6_N DUF148 YP_001544551.1 KEGG: rci:RCIX1667 hypothetical protein YP_001544552.1 KEGG: rci:RCIX1671 hypothetical protein YP_001544553.1 PFAM: PAAR repeat-containing protein; KEGG: rci:RCIX1673 hypothetical protein YP_001544554.1 PFAM: GPW/gp25 family protein; KEGG: rci:RCIX1675 hypothetical protein YP_001544555.1 KEGG: amt:Amet_4345 hypothetical protein YP_001544556.1 KEGG: rci:RCIX1677 hypothetical protein YP_001544559.1 KEGG: mag:amb1895 hypothetical protein YP_001544565.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0456 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase-like YP_001544566.1 PFAM: glycosyl transferase 2; KEGG: rrs:RoseRS_2949 glycosyl transferase, family 2 YP_001544567.1 PFAM: sugar transferase; KEGG: rca:Rcas_1950 undecaprenyl-phosphate galactose phosphotransferase YP_001544568.1 PFAM: aldo/keto reductase; KEGG: sus:Acid_4144 aldo/keto reductase YP_001544569.1 PFAM: protein of unknown function UPF0060; KEGG: cbe:Cbei_2176 protein of unknown function UPF0060 YP_001544570.1 KEGG: sde:Sde_0444 hypothetical protein YP_001544571.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bld:BLi03902 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; RBL00455 YP_001544572.1 KEGG: rrs:RoseRS_2359 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_001544573.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: bld:BLi03901 isochorismate synthase; RBL00457 YP_001544574.1 TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_3645 2,3-dihydroxybenzoate-AMP ligase YP_001544575.1 PFAM: isochorismatase hydrolase; phosphopantetheine-binding; KEGG: mxa:MXAN_3644 isochorismatase YP_001544576.1 TIGRFAM: amino acid adenylation domain; thioester reductase domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; Male sterility domain; KEGG: mxa:MXAN_3643 non-ribosomal peptide synthase MxcG YP_001544577.1 PFAM: periplasmic binding protein; KEGG: csa:Csal_2699 periplasmic binding protein YP_001544578.1 PFAM: transport system permease; KEGG: mmw:Mmwyl1_2063 transport system permease YP_001544579.1 PFAM: transport system permease; KEGG: maq:Maqu_3298 transport system permease YP_001544580.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_3299 ABC transporter related YP_001544581.1 KEGG: hch:HCH_01311 hypothetical protein YP_001544582.1 KEGG: noc:Noc_0728 hypothetical protein YP_001544584.1 KEGG: tva:TVAG_470020 ankyrin repeat protein, Pfam: Ank PROSITE: ANK_REPEAT ANK_REP_REGION YP_001544585.1 PFAM: FG-GAP repeat protein; KEGG: ava:Ava_0582 integrins alpha chain YP_001544586.1 PFAM: peptidase C11 clostripain; KEGG: rrs:RoseRS_1520 FHA domain containing protein YP_001544588.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: gme:Gmet_1295 peptidase M3B, oligoendopeptidase-related clade 3 YP_001544589.1 PFAM: coagulation factor 5/8 type domain protein; Carbohydrate-binding family V/XII; Rare lipoprotein A; KEGG: rca:Rcas_2307 rare lipoprotein A YP_001544590.1 KEGG: rrs:RoseRS_2306 hypothetical protein YP_001544591.1 KEGG: lic:LIC10670 hypothetical protein YP_001544593.1 KEGG: azo:azo3722 hypothetical protein YP_001544599.1 PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: ter:Tery_0225 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters YP_001544600.1 KEGG: nwi:Nwi_0610 hypothetical protein YP_001544601.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0700 probable ABC transporter protein, ATP-binding component YP_001544602.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: lil:LA2447 outermembrane protein YP_001544604.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_0205 response regulator receiver protein YP_001544605.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0204 integral membrane sensor hybrid histidine kinase YP_001544606.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rrs:RoseRS_2299 electron transfer flavoprotein beta-subunit YP_001544607.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: rrs:RoseRS_2298 electron transfer flavoprotein, alpha subunit YP_001544608.1 PFAM: Asparaginase/glutaminase; KEGG: rrs:RoseRS_2187 asparaginase/glutaminase YP_001544609.1 KEGG: rxy:Rxyl_2569 hypothetical protein YP_001544610.1 KEGG: tme:Tmel_0077 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein YP_001544611.1 KEGG: mxa:MXAN_2889 radical SAM domain protein YP_001544612.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001544613.1 KEGG: mxa:MXAN_2887 hypothetical protein YP_001544614.1 KEGG: tfu:Tfu_0737 hypothetical protein YP_001544615.1 KEGG: tfu:Tfu_0736 hypothetical protein YP_001544616.1 KEGG: tfu:Tfu_0736 hypothetical protein YP_001544617.1 KEGG: tfu:Tfu_0736 hypothetical protein YP_001544618.1 KEGG: tfu:Tfu_0736 hypothetical protein YP_001544619.1 TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: rrs:RoseRS_2711 YidE/YbjL duplication YP_001544620.1 TIGRFAM: Extracellular HAF; KEGG: fal:FRAAL5545 hypothetical protein; signal peptide YP_001544621.1 PFAM: PRC-barrel domain protein; KEGG: dge:Dgeo_1677 PRC-barrel domain protein YP_001544622.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa19220 short chain dehydrogenase YP_001544623.1 PFAM: peptidase M23B; KEGG: rrs:RoseRS_0052 peptidase M23B YP_001544624.1 PFAM: regulatory protein LuxR; KEGG: reh:H16_B0621 response regulator, NarL-family YP_001544626.1 PFAM: helix-turn-helix domain protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001544627.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_4108 beta-ketoacyl synthase YP_001544628.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_4402 non-ribosomal peptide synthetase YP_001544629.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase YP_001544630.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pap:PSPA7_2859 linear gramicidin synthetase subunit D YP_001544631.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: ana:all2646 polyketide synthase type I YP_001544632.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: ppf:Pput_1676 amino acid adenylation domain YP_001544633.1 PFAM: major facilitator superfamily MFS_1; KEGG: ava:Ava_4102 major facilitator superfamily MFS_1 YP_001544634.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sma:SAV3648 cystathionine beta-synthase YP_001544635.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: sma:SAV3645 ornithine cyclodeaminase YP_001544636.1 SMART: Integrin alpha beta-propellor repeat protein; KEGG: pin:Ping_0512 PKD domain containing protein YP_001544637.1 PFAM: helix-turn-helix domain protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: rha:RHA1_ro02716 protein kinase/transcriptional regulator, LuxR family YP_001544638.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ter:Tery_0901 GCN5-related N-acetyltransferase YP_001544639.1 PFAM: Lanthionine synthetase C family protein; KEGG: ava:Ava_B0238 lanthionine synthetase C-like YP_001544640.1 PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: mxa:MXAN_2853 lantibiotic ABC transporter, permease/ATP-binding protein YP_001544642.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ter:Tery_2398 FMN-dependent alpha-hydroxy acid dehydrogenase YP_001544644.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: ana:alr2679 polyketide synthase YP_001544645.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_4099 non-ribosomal peptide synthase YP_001544646.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_4099 non-ribosomal peptide synthase YP_001544647.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ava:Ava_4100 SyrP protein YP_001544648.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_4598 non-ribosomal peptide synthase YP_001544649.1 PFAM: condensation domain protein; KEGG: ava:Ava_4099 non-ribosomal peptide synthase YP_001544650.1 TIGRFAM: methyltransferase FkbM family; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase YP_001544651.1 KEGG: ter:Tery_4093 hypothetical protein YP_001544652.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase YP_001544653.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase YP_001544654.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ava:Ava_3988 phenylalanine/histidine ammonia-lyase YP_001544655.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_3987 AMP-dependent synthetase and ligase YP_001544656.1 PFAM: Thioesterase; KEGG: ava:Ava_4730 thioesterase YP_001544657.1 TIGRFAM: glycosyltransferase, MGT family; PFAM: glycosyl transferase 28; KEGG: sus:Acid_1981 glycosyltransferase, MGT family YP_001544658.1 PFAM: aminotransferase class I and II; KEGG: xom:XOO_2745 valine-pyruvate aminotransferase YP_001544659.1 KEGG: sus:Acid_4167 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001544660.1 PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0217 ABC-2 type transporter YP_001544661.1 PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0216 ABC-2 type transporter YP_001544662.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG12217 ABC-2 type transport system ATP-binding protein YP_001544663.1 KEGG: pmy:Pmen_3088 hypothetical protein YP_001544664.1 PFAM: nuclear protein SET; KEGG: mmr:Mmar10_0843 nuclear protein SET YP_001544665.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_0590 anti-sigma-factor antagonist YP_001544666.1 PFAM: regulatory protein LuxR; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_4327 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_001544667.1 KEGG: sma:SAV489 hypothetical protein YP_001544668.1 PFAM: extracellular solute-binding protein family 5; KEGG: tma:TM1746 oligopeptide transport system substrate-binding protein YP_001544669.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1747 oligopeptide transport system permease YP_001544670.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1748 oligopeptide transport system permease YP_001544671.1 KEGG: tma:TM1749 oligopeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001544672.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1750 oligopeptide transport system ATP-binding protein YP_001544673.1 PFAM: glycoside hydrolase 5; KEGG: rca:Rcas_0182 glycoside hydrolase 5 YP_001544674.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: shn:Shewana3_2252 transcriptional regulator, LacI family YP_001544675.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: rca:Rcas_4162 peptide chain release factor 2 YP_001544676.1 KEGG: det:DET0571 hypothetical protein YP_001544677.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: amt:Amet_3687 alkylhydroperoxidase like protein, AhpD family YP_001544678.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dge:Dgeo_2614 2-hydroxy-3-oxopropionate reductase YP_001544679.1 KEGG: mxa:MXAN_0347 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001544680.1 PFAM: response regulator receiver; KEGG: mxa:MXAN_7150 response regulator YP_001544682.1 PFAM: Rhodanese domain protein; KEGG: mgi:Mflv_0984 rhodanese domain protein YP_001544683.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sma:SAV3117 RNA polymerase ECF-subfamily sigma factor YP_001544684.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001544686.1 KEGG: csc:Csac_0485 hypothetical protein YP_001544687.1 PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_3210 protein of unknown function DUF324 YP_001544688.1 TIGRFAM: CRISPR-associated RAMP protein, Csx10 family; PFAM: protein of unknown function DUF324; KEGG: vvy:VVA1539 hypothetical protein YP_001544689.1 PFAM: protein of unknown function DUF324; KEGG: swo:Swol_2526 uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)-like protein YP_001544691.1 KEGG: swo:Swol_2524 hypothetical protein YP_001544692.1 PFAM: intron maturase type II; RNA-directed DNA polymerase (Reverse transcriptase); KEGG: dsy:DSY4652 hypothetical protein YP_001544693.1 TIGRFAM: CRISPR-associated protein, TM1812 family; PFAM: CRISPR-associated protein TM1812; KEGG: cyb:CYB_0843 CRISPR-associated protein, TM1812 family YP_001544694.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001544695.1 PFAM: peptidase M50; KEGG: rca:Rcas_0990 peptidase M50 YP_001544696.1 KEGG: sfu:Sfum_2480 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001544697.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: rca:Rcas_0556 hemolysin A YP_001544698.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Fibronectin type III domain protein; KEGG: rrs:RoseRS_3112 conserved repeat domain YP_001544699.1 PFAM: FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: gvi:gll4216 unknown protein YP_001544700.1 KEGG: nca:Noca_2086 hypothetical protein YP_001544701.1 PFAM: hypothetical protein; transcriptional activator domain; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3701 transcriptional regulator, SARP family YP_001544702.1 SMART: Integrin alpha beta-propellor repeat protein; KEGG: sde:Sde_2598 PAS/PAC sensor signal transduction histidine kinase YP_001544703.1 PFAM: helix-turn-helix domain protein; KEGG: sal:Sala_2208 transcriptional regulator, XRE family YP_001544704.1 KEGG: sal:Sala_2207 hypothetical protein YP_001544705.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001544706.1 PFAM: peptidase S51 dipeptidase E; KEGG: sco:SCO0277 hypothetical protein YP_001544707.1 TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein; KEGG: esa:ESA_01414 hypothetical protein YP_001544708.1 KEGG: rpe:RPE_1481 DNA or RNA helicase of superfamily II YP_001544709.1 PFAM: transposase IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family YP_001544710.1 TIGRFAM: RNA polymerase sigma-70; PFAM: regulatory protein LuxR; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gka:GK2254 DNA-directed RNA polymerase ECF-type sigma factor (sigma-X) YP_001544713.1 KEGG: rxy:Rxyl_1241 hypothetical protein YP_001544714.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_2811 tetratricopeptide TPR_2 YP_001544716.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aau:AAur_1190 glyoxalase YP_001544717.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: pol:Bpro_0147 helix-turn-helix, type 11 YP_001544720.1 PFAM: beta-lactamase; KEGG: pdi:BDI_1500 beta-lactamase class C, 6-aminohexanoate-dimer hydrolase YP_001544721.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ana:all3130 hypothetical protein YP_001544722.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: bcz:BCZK2825 phosphoenolpyruvate synthase YP_001544723.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mta:Moth_0192 ammonium transporter YP_001544724.1 KEGG: eba:ebA2903 hypothetical protein YP_001544725.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: rrs:RoseRS_0223 DEAD/DEAH box helicase domain protein YP_001544726.1 KEGG: rrs:RoseRS_1025 hypothetical protein YP_001544727.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rrs:RoseRS_1024 ATPase associated with various cellular activities, AAA_5 YP_001544728.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rrs:RoseRS_0461 helicase domain protein YP_001544729.1 KEGG: rrs:RoseRS_0460 hypothetical protein YP_001544730.1 PFAM: protein of unknown function DUF559; KEGG: rca:Rcas_1608 protein of unknown function DUF559 YP_001544731.1 PFAM: Kelch repeat-containing protein; Two component regulator propeller; KEGG: rrs:RoseRS_1016 thrombospondin type 3 repeat YP_001544732.1 KEGG: sco:SCO0559 hypothetical protein YP_001544733.1 KEGG: rca:Rcas_2373 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001544734.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: mxa:MXAN_2260 potassium efflux system family protein YP_001544735.1 PFAM: regulatory protein MarR; KEGG: bur:Bcep18194_B1273 transcriptional regulator, MarR family YP_001544736.1 PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A1045 transcription regulator protein YP_001544737.1 PFAM: cytochrome P450; KEGG: bld:BLi02822 cytochrome P450-like enzyme; RBL03531 YP_001544738.1 KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein YP_001544739.1 PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_5690 flavin-containing monooxygenase YP_001544740.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rca:Rcas_4411 deoxyribodipyrimidine photo-lyase YP_001544741.1 KEGG: noc:Noc_0728 hypothetical protein YP_001544743.1 KEGG: ter:Tery_1093 hypothetical protein YP_001544744.1 PFAM: Tail Collar domain protein; KEGG: ter:Tery_2255 hypothetical protein YP_001544745.1 KEGG: bur:Bcep18194_C7374 YadA/haemagluttinin like protein YP_001544746.1 KEGG: ter:Tery_1092 hypothetical protein YP_001544747.1 KEGG: ter:Tery_1090 hypothetical protein YP_001544748.1 KEGG: rrs:RoseRS_3020 transcriptional regulator-like protein YP_001544750.1 KEGG: fjo:Fjoh_4322 G:T/U mismatch-specific DNA glycosylase-like protein YP_001544751.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: atc:AGR_C_4472 hypothetical protein YP_001544752.1 TIGRFAM: Extracellular HAF; KEGG: mac:MA0957 hypothetical protein YP_001544753.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mxa:MXAN_4949 RNA polymerase sigma-70 factor, ECF subfamily YP_001544755.1 KEGG: sus:Acid_3133 hypothetical protein YP_001544757.1 KEGG: reu:Reut_A2011 hypothetical protein YP_001544759.1 TIGRFAM: RNA polymerase sigma-70 YP_001544760.1 KEGG: ter:Tery_1093 hypothetical protein YP_001544761.1 PFAM: Tail Collar domain protein; KEGG: ter:Tery_1091 phage tail collar YP_001544762.1 PFAM: beta-lactamase domain protein; KEGG: ser:SERP1155 competence protein ComEC/Rec2 YP_001544763.1 KEGG: ter:Tery_1092 hypothetical protein YP_001544764.1 KEGG: ter:Tery_1090 hypothetical protein YP_001544765.1 PFAM: protein of unknown function DUF323; KEGG: ava:Ava_4280 protein of unknown function DUF323 YP_001544766.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; Sigma-70 region 4 type 2; KEGG: rca:Rcas_4327 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_001544767.1 PFAM: lipolytic protein G-D-S-L family; KEGG: stp:Strop_1739 lipolytic enzyme, G-D-S-L family YP_001544769.1 KEGG: mgi:Mflv_2291 hypothetical protein YP_001544770.1 SMART: Laminin G; LamG domain protein jellyroll fold domain protein; KEGG: rca:Rcas_2574 LamG domain protein jellyroll fold domain protein YP_001544772.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05460 probable macrolide-efflux transmembrane protein YP_001544773.1 PFAM: regulatory protein TetR; KEGG: bce:BC1059 transcriptional regulator, TetR family YP_001544774.1 PFAM: regulatory protein MarR; KEGG: mca:MCA2812 transcriptional regulator, MarR family YP_001544775.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mca:MCA2813 4Fe-4S binding domain protein YP_001544776.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pst:PSPTO_1582 oxidoreductase, short-chain dehydrogenase/reductase YP_001544777.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rrs:RoseRS_0480 glyoxalase/bleomycin resistance protein/dioxygenase YP_001544778.1 KEGG: fal:FRAAL0111 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_001544779.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: rpc:RPC_3036 amino acid adenylation YP_001544780.1 KEGG: sdn:Sden_1933 hypothetical protein YP_001544781.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: bca:BCE_1185 hypothetical protein YP_001544782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ade:Adeh_3901 glyoxalase/bleomycin resistance protein/dioxygenase YP_001544783.1 KEGG: pat:Patl_0590 dimethylmenaquinone methyltransferase YP_001544784.1 PFAM: histidinol dehydrogenase; KEGG: rrs:RoseRS_3179 histidinol dehydrogenase YP_001544786.1 KEGG: hwa:HQ3721A unspecific monooxygenase (cytochrome P450) YP_001544787.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pth:PTH_2269 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog YP_001544790.1 KEGG: rba:RB4356 hypothetical protein YP_001544791.1 PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; KEGG: rha:RHA1_ro02967 possible carboxylase YP_001544792.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: pat:Patl_0590 dimethylmenaquinone methyltransferase YP_001544793.1 KEGG: mfa:Mfla_2258 hypothetical protein YP_001544794.1 PFAM: protein of unknown function DUF201; KEGG: bld:BLi00227 hypothetical protein YP_001544795.1 KEGG: ava:Ava_1266 xenobiotic compound monooxygenase, DszA family, A subunit YP_001544796.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sco:SCO2696 2-hydroxyacid-family dehydrogenase YP_001544797.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rba:RB11118 chloromuconate cycloisomerase YkfB1 YP_001544798.1 PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu1442 hypothetical protein YP_001544800.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: rca:Rcas_0881 aconitate hydratase 1 YP_001544801.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; KEGG: aeh:Mlg_0131 amino acid adenylation domain YP_001544802.1 PFAM: Citrate synthase; KEGG: syn:sll0401 citrate synthase YP_001544803.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cac:CAC3446 predicted epimerase, PhzC/PhzF homolog YP_001544804.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: shn:Shewana3_4319 resolvase, N-terminal domain protein YP_001544806.1 PFAM: PilT protein domain protein; KEGG: ava:Ava_3324 PilT protein-like YP_001544807.1 KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein YP_001544810.1 PFAM: transposase IS4 family protein; KEGG: rca:Rcas_0411 transposase IS4 family protein YP_001544811.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0641 tetratricopeptide TPR_2 repeat protein YP_001544814.1 SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001544816.1 PFAM: transposase mutator type; KEGG: afw:Anae109_1076 transposase mutator type YP_001544817.1 PFAM: transposase; KEGG: mgm:Mmc1_2862 transposase YP_001544818.1 KEGG: rba:RB3999 integrase YP_001544819.1 PFAM: integrase domain protein SAM domain protein; KEGG: gur:Gura_2872 phage integrase YP_001544820.1 KEGG: ana:alr9024 transposase YP_001544821.1 PFAM: helix-turn-helix domain protein; KEGG: sal:Sala_2208 transcriptional regulator, XRE family YP_001544823.1 KEGG: ana:alr7249 unknown protein YP_001544825.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: lic:LIC10830 lipoprotein YP_001544826.1 KEGG: pen:PSEEN2597 hypothetical protein YP_001544827.1 KEGG: vvy:VV1158 hypothetical protein YP_001544828.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mes:Meso_2224 short-chain dehydrogenase/reductase SDR YP_001544829.1 KEGG: azo:azo2652 hypothetical protein YP_001544830.1 KEGG: ssv:SSU98_1248 probable surface antigen negative regulator PAR YP_001544831.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rca:Rcas_2945 cobalamin synthesis protein P47K YP_001544832.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_4898 GCN5-related N-acetyltransferase YP_001544833.1 PFAM: periplasmic solute binding protein; KEGG: fal:FRAAL0163 manganese ABC transporter YP_001544834.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1257 ABC transporter related YP_001544835.1 PFAM: ABC-3 protein; KEGG: rrs:RoseRS_1256 ABC-3 protein YP_001544836.1 KEGG: gur:Gura_1849 hypothetical protein YP_001544837.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_1848 integrase, catalytic region YP_001544838.1 KEGG: rrs:RoseRS_0558 cobaltochelatase, CobN subunit YP_001544839.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gvi:gll1483 probable methyltransferase YP_001544840.1 KEGG: rca:Rcas_3902 hypothetical protein YP_001544841.1 PFAM: ferric-uptake regulator; KEGG: rca:Rcas_3901 ferric uptake regulator, Fur family YP_001544842.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rca:Rcas_2949 cobalamin synthesis protein P47K YP_001544843.1 KEGG: rrs:RoseRS_3107 regulatory protein, FmdB family YP_001544844.1 KEGG: rba:RB13090 probable monooxygenase YP_001544845.1 PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; KEGG: nph:NP3542A transporter 43 (probable ferrous iron transport protein) YP_001544846.1 PFAM: methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ava:Ava_B0229 hypothetical protein YP_001544847.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001544848.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001544851.1 PFAM: glycosyl transferase 28; KEGG: gvi:gll2420 hypothetical protein YP_001544853.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_1085 bifunctional deaminase-reductase domain protein YP_001544854.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1427 ABC transporter ATP-binding protein YP_001544855.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ana:all2623 multidrug resistance protein YP_001544856.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_001544857.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase YP_001544858.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: plu:plu2670 hypothetical protein YP_001544859.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pau:PA14_33650 pyoverdine synthetase D YP_001544860.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: psp:PSPPH_1911 pyoverdine chromophore precursor synthetase YP_001544863.1 PFAM: periplasmic solute binding protein YP_001544864.1 PFAM: ABC-3 protein; KEGG: abo:ABO_0157 zinc ABC transporter permease YP_001544865.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmy:Pmen_0995 ABC transporter related YP_001544866.1 PFAM: ThiJ/PfpI domain protein; KEGG: sma:SAV1666 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme YP_001544867.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ava:Ava_B0153 ABC transporter-like YP_001544868.1 PFAM: transport system permease; KEGG: ava:Ava_B0152 transport system permease YP_001544869.1 PFAM: periplasmic binding protein; KEGG: fra:Francci3_4239 periplasmic binding protein YP_001544870.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ava:Ava_C0006 hypothetical protein YP_001544871.1 PFAM: peptidase S45 penicillin amidase; KEGG: rca:Rcas_1469 peptidase S45 penicillin amidase YP_001544872.1 TIGRFAM: thioester reductase domain; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; Male sterility domain; KEGG: mxa:MXAN_4525 non-ribosomal peptide synthase MxaA YP_001544873.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ava:Ava_C0007 condensation domain YP_001544874.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_C0002 amino acid adenylation YP_001544875.1 PFAM: condensation domain protein; KEGG: mxa:MXAN_3618 non-ribosomal peptide synthetase YP_001544876.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_C0009 amino acid adenylation YP_001544877.1 PFAM: MbtH domain protein; KEGG: mxa:MXAN_3118 MbtH-like domain protein YP_001544878.1 KEGG: rca:Rcas_2248 periplasmic binding protein YP_001544879.1 PFAM: transport system permease; KEGG: rrs:RoseRS_3088 transport system permease YP_001544880.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3089 ABC transporter related YP_001544881.1 PFAM: regulatory protein Crp; KEGG: gvi:glr2799 Crp family transcriptional regulatory protein YP_001544882.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001544883.1 PFAM: chloramphenicol acetyltransferase; KEGG: cba:CLB_1568 chloramphenicol acetyltransferase YP_001544885.1 PFAM: inner-membrane translocator; KEGG: aav:Aave_2249 inner-membrane translocator YP_001544886.1 PFAM: inner-membrane translocator; KEGG: aav:Aave_2250 inner-membrane translocator YP_001544887.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_4461 ABC transporter related YP_001544888.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: msm:MSMEG_1712 ABC transporter periplasmic-binding protein YtfQ YP_001544889.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_2255 periplasmic binding protein/LacI transcriptional regulator YP_001544890.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398 YP_001544891.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: gtn:GTNG_1802 hypothetical protein YP_001544892.1 PFAM: protein of unknown function UPF0074; KEGG: bch:Bcen2424_1205 transcriptional regulator, BadM/Rrf2 family YP_001544893.1 PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_2928 drug resistance transporter, EmrB/QacA subfamily YP_001544898.1 KEGG: dra:DR_1956 hypothetical protein YP_001544899.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001544900.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001544901.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sen:SACE_0743 methyltransferase,S-adenosyl-L-methionine (SAM)-MTase YP_001544902.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_001544903.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: rrs:RoseRS_1504 ferric reductase domain protein transmembrane component, N-terminal domain YP_001544904.1 PFAM: glycoside hydrolase 6; cellulose-binding family II; KEGG: sde:Sde_2272 cellobiohydrolase A (1 4-beta-cellobiosidase A)-like YP_001544905.1 KEGG: nwi:Nwi_0114 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001544906.1 PFAM: cellulose-binding family II; glycosyl hydrolase BNR repeat-containing protein; Kelch repeat-containing protein; KEGG: tfu:Tfu_1612 cellulose-binding, family II, bacterial type YP_001544907.1 KEGG: sen:SACE_1856 phosphotransferase (aminonucleoside antibiotic resistance) YP_001544908.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mkm:Mkms_0209 alpha/beta hydrolase fold-3 domain protein YP_001544909.1 PFAM: von Willebrand factor type A; KEGG: mxa:MXAN_7433 von Willebrand factor type A domain protein YP_001544910.1 PFAM: pentapeptide repeat protein; KEGG: gvi:glr4294 hypothetical protein YP_001544911.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0204 integral membrane sensor hybrid histidine kinase YP_001544912.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_0205 response regulator receiver protein YP_001544913.1 KEGG: ret:RHE_PD00247 hypothetical protein YP_001544915.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; KEGG: rca:Rcas_0623 methyltransferase type 11 YP_001544916.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_0205 response regulator receiver protein YP_001544917.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: gka:GK1763 5'-nucleotidase YP_001544918.1 KEGG: aba:Acid345_3933 WD40-like beta propeller YP_001544919.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mxa:MXAN_0560 penicillin-resistant dd-carboxypeptidase YP_001544920.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sen:SACE_3731 hypothetical protein YP_001544921.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sen:SACE_0703 carboxypeptidase YP_001544922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001544923.1 KEGG: rca:Rcas_4165 hypothetical protein YP_001544924.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sth:STH487 alkaline proteinase YP_001544926.1 KEGG: gvi:glr1376 hypothetical protein YP_001544927.1 KEGG: stp:Strop_2737 transcriptional activator domain YP_001544928.1 PFAM: glutaredoxin YP_001544929.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; GAF domain protein; KEGG: rca:Rcas_3177 adenylate/guanylate cyclase with GAF and PAS/PAC sensors YP_001544930.1 PFAM: protein of unknown function DUF178; KEGG: sth:STH819 hypothetical protein YP_001544931.1 PFAM: Radical SAM domain protein; KEGG: sus:Acid_1309 radical SAM domain protein YP_001544932.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0456 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase-like YP_001544933.1 PFAM: glycosyl transferase group 1; KEGG: sye:Syncc9902_0633 lipopolysaccharide biosynthesis protein-like YP_001544934.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3645 glycosyl transferase group 1 YP_001544935.1 PFAM: Methyltransferase type 11; KEGG: pth:PTH_1085 hypothetical protein YP_001544937.1 SMART: LamG domain protein jellyroll fold domain protein; KEGG: rca:Rcas_2574 LamG domain protein jellyroll fold domain protein YP_001544938.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: ana:alr2137 two-component sensor histidine kinase YP_001544939.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sco:SCO3638 two-component system regulator YP_001544940.1 KEGG: xac:XAC1205 hypothetical protein YP_001544943.1 PFAM: glycoside hydrolase 19; Carbohydrate-binding family V/XII; KEGG: stp:Strop_4405 chitinase YP_001544945.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase 18; SMART: chitinase II; KEGG: hch:HCH_05453 chitinase YP_001544946.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase 5; KEGG: cne:CNA07770 hypothetical protein YP_001544949.1 KEGG: fps:FP0938 probable glycosyl hydrolase YP_001544950.1 KEGG: fps:FP0937 hypothetical protein YP_001544951.1 KEGG: fps:FP0936 probable transmembrane protein precursor YP_001544952.1 PFAM: glycosyl transferase 2; KEGG: gme:Gmet_0242 hypothetical protein YP_001544953.1 PFAM: glycosyl transferase group 1; KEGG: fps:FP0939 glycosyl transferase, group 1 family protein YP_001544954.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ppd:Ppro_2660 anti-sigma-factor antagonist YP_001544955.1 PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: gme:Gmet_2818 PAS/PAC sensor protein YP_001544956.1 KEGG: rca:Rcas_1195 anti-sigma-factor antagonist YP_001544957.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1364 anti-anti-sigma regulatory factor, SpoIIAA YP_001544958.1 KEGG: aba:Acid345_4612 hypothetical protein YP_001544959.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001544960.1 KEGG: gvi:gll0250 unknown protein YP_001544961.1 PFAM: Carbohydrate-binding family V/XII; KEGG: fjo:Fjoh_4090 hypothetical protein YP_001544962.1 KEGG: rpe:RPE_1481 DNA or RNA helicase of superfamily II YP_001544963.1 SMART: Integrin alpha beta-propellor repeat protein; KEGG: sde:Sde_2598 PAS/PAC sensor signal transduction histidine kinase YP_001544965.1 SMART: Lipid transport protein domain; KEGG: mxa:MXAN_0002 hypothetical protein YP_001544966.1 KEGG: bcl:ABC3522 hypothetical protein YP_001544967.1 KEGG: mxa:MXAN_2413 hypothetical protein YP_001544969.1 KEGG: chu:CHU_1868 hypothetical protein YP_001544970.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: eba:ebA6861 hypothetical protein YP_001544971.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sth:STH487 alkaline proteinase YP_001544972.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: oan:Oant_2807 monosaccharide-transporting ATPase YP_001544974.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0135 anti-sigma-factor antagonist YP_001544975.1 PFAM: helix-turn-helix domain protein; hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001544976.1 PFAM: PHP domain protein; KEGG: rrs:RoseRS_0336 PHP C-terminal domain protein YP_001544977.1 PFAM: Domain of unknown function DUF1905; KEGG: sma:SAV637 hypothetical protein YP_001544978.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; Cache domain protein; KEGG: rca:Rcas_0590 anti-sigma-factor antagonist YP_001544979.1 periplasmic sensory protein associated with the TorRS two-component regulatory system YP_001544980.1 KEGG: xau:Xaut_3793 endoribonuclease L-PSP YP_001544981.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: sen:SACE_4576 cupin 2, conserved barrel YP_001544982.1 KEGG: mxa:MXAN_2224 hypothetical protein YP_001544984.1 PFAM: Peptidoglycan-binding LysM; KEGG: mes:Meso_1800 peptidase M23B YP_001544985.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bca:BCE_3794 serine protease, subtilase YP_001544987.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rca:Rcas_4393 chaperone protein DnaJ YP_001544991.1 KEGG: rca:Rcas_0831 hypothetical protein YP_001544992.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: gsu:GSU0044 salmonella virulence plasmid 65kDa B protein/YD repeat protein YP_001544994.1 PFAM: regulatory protein TetR; KEGG: rca:Rcas_4171 transcriptional regulator, TetR family YP_001544995.1 PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein YP_001544996.1 KEGG: ana:alr1561 unknown protein YP_001544997.1 KEGG: ana:alr1562 unknown protein YP_001544998.1 KEGG: ana:alr1563 unknown protein YP_001544999.1 TIGRFAM: Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: ana:alr1564 unknown protein YP_001545000.1 TIGRFAM: CRISPR-associated protein Cas6; KEGG: tth:TT_P0204 hypothetical protein YP_001545001.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: mfa:Mfla_0605 CRISPR-associated protein Cas4 YP_001545002.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: drm:Dred_1625 CRISPR-associated protein Cas1 YP_001545003.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: ava:Ava_4177 protein of unknown function DUF196 YP_001545004.1 KEGG: mxa:MXAN_7309 hypothetical protein YP_001545007.1 KEGG: rrs:RoseRS_2168 transferase hexapeptide repeat containing protein YP_001545008.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: nph:NP1202A PhzF-like protein YP_001545010.1 KEGG: sth:STH2662 poly-gamma-glutamate biosynthesis enzyme YP_001545011.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sth:STH1692 cytochrome D ubiquinol oxidase subunit I YP_001545012.1 PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: sth:STH1691 cytochrome D ubiquinol oxidase subunit II YP_001545013.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cvi:CV_3208 hypothetical protein YP_001545014.1 KEGG: rrs:RoseRS_4574 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_001545015.1 PFAM: extracellular solute-binding protein family 5; KEGG: det:DET0573 oligopeptide-binding protein YP_001545016.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rrs:RoseRS_0192 transcriptional coactivator/pterin dehydratase YP_001545017.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_2209 glycosyl transferase group 1 YP_001545018.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: sth:STH1075 D-alanyl-D-alanine carboxypeptidase YP_001545019.1 KEGG: aba:Acid345_1066 hypothetical protein YP_001545020.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rrs:RoseRS_2662 adenylyl cyclase class-3/4/guanylyl cyclase YP_001545021.1 KEGG: dsy:DSY1218 hypothetical protein YP_001545022.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001545023.1 KEGG: mmw:Mmwyl1_2462 hypothetical protein YP_001545024.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_2730 adenylate/guanylate cyclase with TPR repeats YP_001545025.1 PFAM: hypothetical protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: ani:AN9426.2 hypothetical protein Pfam: PNP_UDP_1 NB-ARC NACHT DegS Laminin_I TPR_1 TPR_2 TPR_4 TPR_3 YP_001545026.1 KEGG: rca:Rcas_2246 hypothetical protein YP_001545027.1 PFAM: Ethanolamine ammonia-lyase light chain; KEGG: psa:PST_3682 ethanolamine ammonia-lyase, light subunit YP_001545028.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: rme:Rmet_5902 ethanolamine ammonia lyase large subunit YP_001545029.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_4343 multi-sensor signal transduction histidine kinase YP_001545030.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reu:Reut_A2289 response regulator receiver:transcriptional regulatory protein, C-terminal YP_001545031.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rxy:Rxyl_2734 L-carnitine dehydratase/bile acid-inducible protein F YP_001545032.1 KEGG: fal:FRAAL3412 alpha-methylacyl-CoA racemase YP_001545033.1 PFAM: extracellular solute-binding protein family 1; KEGG: rsq:Rsph17025_3159 hypothetical protein YP_001545034.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_3160 hypothetical protein YP_001545035.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sco:SCO5923 ABC-transporter ATP-binding protein YP_001545036.1 PFAM: Extracellular ligand-binding receptor; KEGG: pla:Plav_1972 extracellular ligand-binding receptor YP_001545038.1 PFAM: N-acetylmuramoyl-L-alanine amidase 2; KEGG: sco:SCO7250 hypothetical protein YP_001545039.1 PFAM: cytochrome P450; KEGG: bca:BCE_2696 cytochrome p450 YP_001545041.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: mca:MCA2214 sensor histidine kinase KdpD YP_001545042.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mca:MCA2213 DNA binding response regulator KdpE YP_001545043.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001545044.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mca:MCA2216 K+-transporting ATPase, B subunit YP_001545046.1 KEGG: bpd:BURPS668_1243 K+-transporting ATPase, C subunit; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit YP_001545047.1 SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3705 hypothetical protein YP_001545048.1 KEGG: ana:all4982 unknown protein YP_001545049.1 PFAM: FAD dependent oxidoreductase; KEGG: rca:Rcas_1073 FAD dependent oxidoreductase YP_001545050.1 PFAM: protein of unknown function DUF881; KEGG: mta:Moth_2250 protein of unknown function DUF881 YP_001545051.1 PFAM: protein of unknown function DUF881; KEGG: pth:PTH_1854 hypothetical protein YP_001545053.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: rrs:RoseRS_2247 aspartate/glutamate/uridylate kinase YP_001545056.1 KEGG: plu:plu4276 transposase, IS982 family YP_001545058.1 KEGG: rrs:RoseRS_2786 hypothetical protein YP_001545060.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: swi:Swit_1941 ribulose-phosphate 3-epimerase YP_001545062.1 PFAM: manganese and iron superoxide dismutase; KEGG: gka:GK2457 manganese superoxide dismutase YP_001545063.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001545064.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_3476 anti-sigma-factor antagonist YP_001545066.1 KEGG: sth:STH1872 8-amino-7-oxononanoate synthetase; TIGRFAM: pyridoxal phosphate-dependent acyltransferase, PFAM: aminotransferase class V; aminotransferase class I and II; aminotransferase class-III YP_001545067.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rca:Rcas_3737 iojap-like protein YP_001545068.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rrs:RoseRS_0598 cold-shock DNA-binding domain protein YP_001545069.1 PFAM: glycoside hydrolase 13 domain protein; KEGG: dde:Dde_2682 isoamylase-like YP_001545071.1 PFAM: alpha/beta hydrolase fold; KEGG: mva:Mvan_2148 alpha/beta hydrolase fold YP_001545072.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rrs:RoseRS_0478 acyl-CoA dehydrogenase domain protein YP_001545073.1 KEGG: kra:Krad_1320 hypothetical protein YP_001545074.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ace:Acel_0088 two component transcriptional regulator, winged helix family YP_001545075.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: det:DET1059 sensor histidine kinase YP_001545076.1 PFAM: Abortive infection protein; KEGG: pat:Patl_3840 abortive infection protein YP_001545077.1 KEGG: deb:DehaBAV1_1193 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001545078.1 KEGG: rrs:RoseRS_2217 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_001545081.1 KEGG: mxa:MXAN_1668 serine/threonine kinase associate protein KapC YP_001545082.1 TIGRFAM: polymorphic outer membrane protein; KEGG: rca:Rcas_2988 polymorphic outer membrane protein YP_001545083.1 KEGG: sfr:Sfri_1617 hypothetical protein YP_001545085.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_1915 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001545086.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3797 transcriptional regulator for ara operon YP_001545087.1 KEGG: bxe:Bxe_B3014 hypothetical protein YP_001545088.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi02090 YkkB YP_001545089.1 KEGG: bvi:Bcep1808_0005 hypothetical protein YP_001545090.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; KEGG: rca:Rcas_0590 anti-sigma-factor antagonist YP_001545091.1 PFAM: Extracellular ligand-binding receptor; KEGG: mxa:MXAN_6665 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein YP_001545092.1 PFAM: cytochrome P450; KEGG: fra:Francci3_4464 cytochrome P450 YP_001545093.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rca:Rcas_3215 oxidoreductase domain protein YP_001545095.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_1503 integral membrane sensor signal transduction histidine kinase YP_001545096.1 PFAM: major facilitator superfamily MFS_1; KEGG: rca:Rcas_3164 permease of the major facilitator superfamily-like protein YP_001545097.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rrs:RoseRS_0574 cobyrinic acid a,c-diamide synthase YP_001545098.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001545099.1 KEGG: mjl:Mjls_3241 hypothetical protein YP_001545100.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bmn:BMA10247_A0505 transcriptional regulator, AraC family YP_001545101.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: gvi:gll1557 ferredoxin nitrite reductase YP_001545102.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mpa:MAP2104 FdhF YP_001545103.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_0761 uroporphyrinogen III synthase HEM4 YP_001545104.1 KEGG: mpt:Mpe_A1392 NO3-/NO2-ABC transporter YP_001545105.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_02222 nitrate transporter component; NasE YP_001545106.1 KEGG: syn:slr0044 ABC-type bicarbonate transport system ATP-binding protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase YP_001545107.1 PFAM: monooxygenase FAD-binding; KEGG: rrs:RoseRS_4211 monooxygenase, FAD-binding YP_001545108.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3759 similar to ABC transporter (binding protein) YP_001545109.1 PFAM: pentapeptide repeat protein; KEGG: btk:BT9727_0977 conserved hypothetical protein, possible quinolone resistance protein YP_001545110.1 KEGG: sma:SAV7247 hypothetical protein YP_001545111.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_0195 two component transcriptional regulator, winged helix family YP_001545112.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rca:Rcas_2956 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_001545113.1 PFAM: Polyprenyl synthetase; KEGG: rrs:RoseRS_1698 polyprenyl synthetase YP_001545114.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: pdi:BDI_0541 pyridine nucleotide-disulphide oxidoreductase YP_001545115.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pau:PA14_10740 spermidine acetyltransferase YP_001545116.1 PFAM: FAD dependent oxidoreductase; KEGG: dge:Dgeo_0210 FAD dependent oxidoreductase YP_001545117.1 KEGG: rrs:RoseRS_0485 translation initiation factor, aIF-2BI family; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001545118.1 KEGG: rca:Rcas_0157 hypothetical protein YP_001545119.1 PFAM: PfkB domain protein; KEGG: rrs:RoseRS_0487 PfkB domain protein YP_001545120.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001545121.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001545122.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_4224 GCN5-related N-acetyltransferase YP_001545123.1 PFAM: Appr-1-p processing domain protein; KEGG: neu:NE1364 Appr-1-p processing enzyme family YP_001545124.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rci:RCIX774 lactoylglutathione lyase YP_001545125.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_3486 integral membrane sensor signal transduction histidine kinase YP_001545126.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_0960 two component transcriptional regulator, winged helix family YP_001545128.1 KEGG: rrs:RoseRS_3483 hypothetical protein YP_001545129.1 KEGG: mxa:MXAN_3166 hypothetical protein YP_001545130.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: sat:SYN_02739 ADP-ribosylglycohydrolase YP_001545131.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001545132.1 KEGG: dps:DP2022 hypothetical protein YP_001545133.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ana:alr5182 oxidoreductase YP_001545134.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; KEGG: drm:Dred_2001 two component, sigma54 specific, transcriptional regulator, fis family YP_001545135.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_3256 integral membrane sensor signal transduction histidine kinase YP_001545136.1 PFAM: protein of unknown function DUF305; KEGG: rca:Rcas_2783 protein of unknown function DUF305 YP_001545138.1 PFAM: Beta-ketoacyl synthase; KEGG: pfl:PFL_3434 3-oxoacyl-(acyl-carrier-protein) synthase II YP_001545140.1 PFAM: cellulose-binding family II; KEGG: sco:SCO5786 secreted hydrolase YP_001545141.1 PFAM: Tetratricopeptide TPR_3; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_6889 tetratricopeptide TPR_2 repeat protein YP_001545143.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: tme:Tmel_0777 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001545144.1 KEGG: rca:Rcas_2517 hypothetical protein YP_001545145.1 KEGG: rrs:RoseRS_3861 hypothetical protein YP_001545146.1 PFAM: O-antigen polymerase; KEGG: rca:Rcas_2722 O-antigen polymerase YP_001545147.1 KEGG: dge:Dgeo_0294 hypothetical protein YP_001545149.1 PFAM: protein of unknown function DUF323; KEGG: hsa:285362 sulfatase modifying factor 1 YP_001545150.1 PFAM: ribonuclease H; KEGG: rca:Rcas_2679 hypothetical protein YP_001545151.1 KEGG: rca:Rcas_2678 hypothetical protein YP_001545153.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: rca:Rcas_2677 RNA-directed DNA polymerase (reverse transcriptase) YP_001545154.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: rca:Rcas_2676 CRISPR-associated protein Cas1 YP_001545155.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: ava:Ava_4177 protein of unknown function DUF196 YP_001545157.1 KEGG: ana:alr5319 hypothetical protein YP_001545158.1 KEGG: bba:Bd3766 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001545160.1 PFAM: glycoside hydrolase 35; Glycoside hydrolase 42 domain protein; KEGG: pfu:PF0363 beta-galactosidase YP_001545161.1 KEGG: vvy:VVA0136 ABC-type oligopeptide transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001545162.1 KEGG: vvy:VV2737 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001545163.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_0400 binding-protein-dependent transport systems inner membrane component YP_001545164.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_0399 binding-protein-dependent transport systems inner membrane component YP_001545165.1 PFAM: extracellular solute-binding protein family 5; KEGG: mxa:MXAN_6551 oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein YP_001545166.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: dge:Dgeo_2697 transcriptional regulator, LacI family YP_001545167.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: sen:SACE_5167 transcriptional regulator, AraC family YP_001545168.1 PFAM: ThiJ/PfpI domain protein; KEGG: bch:Bcen2424_3423 ThiJ/PfpI domain protein YP_001545169.1 PFAM: glycoside hydrolase 1; KEGG: mxa:MXAN_6555 beta-glucosidase YP_001545170.1 KEGG: cya:CYA_0846 base excision DNA repair protein, HhH-GPD family; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001545171.1 SMART: Integrin alpha beta-propellor repeat protein; KEGG: sde:Sde_2598 PAS/PAC sensor signal transduction histidine kinase YP_001545172.1 PFAM: conserved hypothetical protein; KEGG: rfr:Rfer_3142 conserved hypothetical protein 730 YP_001545173.1 KEGG: rca:Rcas_2988 polymorphic outer membrane protein YP_001545174.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ava:Ava_3988 phenylalanine/histidine ammonia-lyase YP_001545175.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_3987 AMP-dependent synthetase and ligase YP_001545176.1 PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28 domain; KEGG: ter:Tery_2111 glycosyltransferase, MGT family YP_001545177.1 PFAM: ABC-2 type transporter; KEGG: nca:Noca_0121 ABC-2 type transporter YP_001545178.1 KEGG: dsy:DSY3465 hypothetical protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001545180.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_4528 polyketide synthase YP_001545181.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pae:PA2399 pyoverdine synthetase D YP_001545182.1 PFAM: AMP-dependent synthetase and ligase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; KEGG: ava:Ava_1609 AMP-dependent synthetase and ligase YP_001545183.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_1611 amino acid adenylation YP_001545184.1 PFAM: Thioesterase; phosphopantetheine-binding; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_3631 polyketide synthase type I YP_001545185.1 PFAM: Thioesterase; KEGG: ana:alr2045 thioesterase YP_001545186.1 TIGRFAM: glycosyltransferase, MGT family; KEGG: sus:Acid_1981 glycosyltransferase, MGT family YP_001545187.1 PFAM: macrocin-O-methyltransferase; KEGG: bcy:Bcer98_0930 macrocin-O-methyltransferase YP_001545189.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; KEGG: rca:Rcas_0590 anti-sigma-factor antagonist YP_001545190.1 PFAM: glycoside hydrolase 1; KEGG: rca:Rcas_0521 beta-glucosidase YP_001545191.1 KEGG: mta:Moth_0915 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein YP_001545192.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_2000 anti-sigma-factor antagonist YP_001545193.1 KEGG: deb:DehaBAV1_0771 ABC-type Na+ efflux pump permease component-like protein YP_001545195.1 PFAM: Amidohydrolase 3; KEGG: rca:Rcas_3832 amidohydrolase 3 YP_001545196.1 PFAM: NUDIX hydrolase; KEGG: rrs:RoseRS_3219 NUDIX hydrolase YP_001545197.1 KEGG: rrs:RoseRS_3147 hypothetical protein YP_001545198.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fno:Fnod_1206 GCN5-related N-acetyltransferase YP_001545199.1 PFAM: glycoside hydrolase 8; Carbohydrate-binding family V/XII; KEGG: bcz:BCZK2421 chitosanase; glycosyl hydrolase 8; endoglucanase YP_001545200.1 PFAM: aldo/keto reductase; KEGG: yen:YE1221 ion channel protein YP_001545201.1 KEGG: rba:RB6151 hypothetical protein YP_001545202.1 PFAM: regulatory protein TetR; KEGG: rpe:RPE_3675 transcriptional regulator, TetR family YP_001545203.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cbe:Cbei_4136 alpha amylase, catalytic region YP_001545205.1 PFAM: AIG2 family protein; KEGG: sma:SAV5670 hypothetical protein YP_001545206.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: rca:Rcas_4126 phosphomethylpyrimidine kinase YP_001545207.1 PFAM: TENA/THI-4 domain protein; KEGG: ana:alr2769 transcriptional regulator YP_001545208.1 PFAM: cobalt transport protein; KEGG: rrs:RoseRS_1922 cobalt transport protein YP_001545209.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_4124 ABC transporter related YP_001545210.1 TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: rca:Rcas_4123 ThiW protein YP_001545211.1 KEGG: mta:Moth_2162 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_001545212.1 PFAM: hydroxyethylthiazole kinase; KEGG: rrs:RoseRS_1926 hydroxyethylthiazole kinase YP_001545213.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: gsu:GSU0493 pyridine nucleotide-disulphide oxidoreductase YP_001545214.1 PFAM: isochorismatase hydrolase; KEGG: art:Arth_0076 isochorismatase hydrolase YP_001545215.1 KEGG: dra:DR_A0230 hypothetical protein YP_001545216.1 KEGG: dra:DR_A0229 hypothetical protein YP_001545217.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: cth:Cthe_1813 urease accessory protein UreG YP_001545218.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001545219.1 KEGG: syn:sll0420 urease beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit YP_001545220.1 KEGG: art:Arth_0241 urease, gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region YP_001545221.1 PFAM: Urease accessory protein UreD; KEGG: dra:DR_A0311 urease accessory protein UreD YP_001545222.1 PFAM: Urease accessory protein UreF; KEGG: ava:Ava_4635 urease accessory protein UreF YP_001545223.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: cya:CYA_2756 protein kinase YP_001545224.1 PFAM: Silent information regulator protein Sir2; KEGG: rxy:Rxyl_1341 silent information regulator protein Sir2 YP_001545225.1 KEGG: mca:MCA1627 transcriptional regulator, Sir2 family YP_001545226.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dra:DR_0676 acetyltransferase YP_001545227.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001545228.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_4601 dTDP-4-dehydrorhamnose reductase YP_001545229.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rca:Rcas_0382 PBS lyase heat domain protein repeat-containing protein YP_001545230.1 PFAM: histidine triad (HIT) protein; KEGG: oih:OB1345 cell-cycle regulation histidine triad (HIT) protein YP_001545231.1 KEGG: ddi:DDBDRAFT_0203511 hypothetical protein YP_001545232.1 PFAM: Fibronectin type III domain protein; KEGG: cac:CAC0717 predicted membrane protein YP_001545233.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: dge:Dgeo_2858 transcriptional regulator, LacI family YP_001545234.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sth:STH2102 acylamino-acid-releasing enzyme YP_001545235.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; KEGG: rca:Rcas_1936 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_001545236.1 PFAM: Phosphoglycerate mutase; KEGG: rrs:RoseRS_1699 phosphoglycerate mutase YP_001545237.1 PFAM: extracellular solute-binding protein family 1; KEGG: oan:Oant_4228 extracellular solute-binding protein family 1 YP_001545238.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_4230 binding-protein-dependent transport systems inner membrane component YP_001545239.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A4199 ABC spermidine/putrescine transporter, inner membrane subunit YP_001545240.1 KEGG: rrs:RoseRS_0790 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_001545241.1 TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: rca:Rcas_1977 CRISPR-associated protein, Csm1 family YP_001545242.1 TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: rca:Rcas_1978 CRISPR-associated protein, Csm2 family YP_001545243.1 TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_1979 CRISPR-associated RAMP protein, Csm3 family YP_001545244.1 TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: rca:Rcas_1980 CRISPR-associated RAMP protein, Csm4 family YP_001545245.1 TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: rca:Rcas_1981 CRISPR-associated RAMP protein, Csm5 family YP_001545246.1 KEGG: rca:Rcas_1982 hypothetical protein YP_001545247.1 KEGG: mae:Maeo_1077 hypothetical protein YP_001545248.1 KEGG: rca:Rcas_1983 hypothetical protein YP_001545249.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: rca:Rcas_1984 CRISPR-associated protein Cas1 YP_001545250.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: rca:Rcas_1985 CRISPR-associated protein Cas2 YP_001545251.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nca:Noca_4525 transposase IS116/IS110/IS902 family protein YP_001545252.1 KEGG: sil:SPO1926 hypothetical protein YP_001545253.1 KEGG: aba:Acid345_0800 lipoprotein signal peptide YP_001545254.1 KEGG: shm:Shewmr7_3919 hypothetical protein YP_001545255.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV476 hypothetical protein YP_001545257.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: drm:Dred_0512 protein of unknown function DUF262 YP_001545258.1 KEGG: fjo:Fjoh_0934 hypothetical protein YP_001545259.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; Acetohydroxy acid isomeroreductase catalytic domain protein; KEGG: mxa:MXAN_2180 NADP oxidoreductase, coenzyme F420-dependent YP_001545260.1 PFAM: glycoside hydrolase 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sco:SCO1444 chitinase precursor YP_001545261.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001545262.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001545264.1 PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: pap:PSPA7_4130 probable transcriptional regulator YP_001545265.1 PFAM: proline racemase; KEGG: bxe:Bxe_B0874 proline racemase YP_001545266.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pae:PA1267 hypothetical protein YP_001545267.1 KEGG: xcv:XCV2746 sarcosine oxidase alpha subunit YP_001545268.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfl:PFL_1409 pyridine nucleotide-disulphide oxidoreductase YP_001545269.1 PFAM: dihydrodipicolinate synthetase; KEGG: mxa:MXAN_6203 dihydrodipicolinate synthase YP_001545270.1 PFAM: aldehyde dehydrogenase; KEGG: xcb:XC_1702 ketoglutarate semialdehyde dehydrogenase YP_001545271.1 KEGG: mlo:mlr3270 hypothetical protein YP_001545272.1 SMART: AAA ATPase; KEGG: rca:Rcas_3240 AAA ATPase central domain protein YP_001545273.1 PFAM: type II secretion system protein E; KEGG: rca:Rcas_3241 type II secretion system protein E YP_001545275.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_1771 acetyltransferase, GNAT family protein YP_001545276.1 PFAM: YCII-related; KEGG: lbl:LBL_0985 hypothetical protein YP_001545277.1 PFAM: peptidase T2 asparaginase 2; KEGG: rrs:RoseRS_0104 asparaginase YP_001545278.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase 16; cellulose-binding family II; Fibronectin type III domain protein; KEGG: sco:SCO6596 secreted protein YP_001545279.1 PFAM: regulatory protein LuxR; KEGG: rha:RHA1_ro06092 response regulator, two-component system YP_001545280.1 PFAM: luciferase; KEGG: bam:Bamb_1048 luciferase YP_001545281.1 KEGG: rrs:RoseRS_4272 hypothetical protein YP_001545282.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001545283.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ccr:CC_1187 spoU rRNA methylase YP_001545284.1 PFAM: glycoside hydrolase 43; KEGG: oih:OB2087 arabinofuranosidase YP_001545285.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_04217 SAM-dependent methyltransferase YP_001545286.1 PFAM: glycoside hydrolase 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase 2 TIM barrel; glycoside hydrolase 2 sugar binding; KEGG: fjo:Fjoh_3378 glycoside hydrolase 2, sugar binding YP_001545287.1 PFAM: regulatory protein TetR; KEGG: mkm:Mkms_5182 transcriptional regulator, TetR family YP_001545288.1 PFAM: cytochrome P450; oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: bur:Bcep18194_C6803 cytochrome P450 YP_001545289.1 KEGG: ppd:Ppro_3150 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001545290.1 PFAM: aldehyde dehydrogenase; KEGG: mxa:MXAN_0625 aldehyde dehydrogenase YP_001545291.1 KEGG: rca:Rcas_4081 hypothetical protein YP_001545293.1 PFAM: transcriptional regulator PadR family protein; KEGG: ckl:CKL_2542 predicted transcriptional regulator YP_001545294.1 KEGG: ckl:CKL_2541 hypothetical protein YP_001545295.1 PFAM: NUDIX hydrolase; KEGG: acr:Acry_1757 NUDIX hydrolase YP_001545296.1 PFAM: protein of unknown function DUF59; KEGG: rrs:RoseRS_0929 protein of unknown function DUF59 YP_001545297.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: rxy:Rxyl_2194 SUF system FeS assembly protein YP_001545298.1 PFAM: PGAP1 family protein; KEGG: sth:STH609 lipase YP_001545299.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001545301.1 PFAM: UspA domain protein; KEGG: ava:Ava_B0190 osmosensitive K+ channel signal transduction histidine kinase, sensor domain YP_001545303.1 KEGG: rrs:RoseRS_0660 uncharacterized membrane protein-like protein YP_001545304.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4 YP_001545305.1 PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: cno:NT01CX_1301 helicase, SNF2/RAD54 family YP_001545306.1 KEGG: hal:VNG7096 hypothetical protein YP_001545307.1 KEGG: pfa:PF14_0343 hypothetical protein YP_001545308.1 PFAM: Patatin; KEGG: har:HEAR2202 patatin-related protein YP_001545309.1 KEGG: shn:Shewana3_1255 hypothetical protein YP_001545310.1 TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; KEGG: rca:Rcas_3878 methionine synthase YP_001545311.1 PFAM: glycoside hydrolase 31; KEGG: ana:alr4773 alpha-glucosidase YP_001545313.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001545314.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: rrs:RoseRS_0191 RNA polymerase, sigma 70 subunit, RpoD family YP_001545315.1 PFAM: protein of unknown function DUF87; KEGG: rrs:RoseRS_1701 protein of unknown function DUF87 YP_001545316.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3742 ABC transporter related YP_001545317.1 PFAM: ABC-2 type transporter; KEGG: rca:Rcas_1509 ABC-2 type transporter YP_001545319.1 PFAM: Rhomboid family protein; KEGG: jan:Jann_3255 rhomboid-like protein YP_001545321.1 PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro03383 transcriptional regulator, TetR family YP_001545322.1 PFAM: alpha/beta hydrolase fold; KEGG: bba:Bd0283 carboxylesterase YP_001545324.1 PFAM: Methyltransferase type 11; KEGG: rci:RCIX580 methyltransferase (UbiE/COQ5 family) YP_001545327.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: rca:Rcas_3984 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_001545328.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mmw:Mmwyl1_0286 lysine exporter protein (LysE/YggA) YP_001545330.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_C6224 short-chain dehydrogenase/reductase SDR YP_001545331.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_001545332.1 PFAM: Colicin V production protein; KEGG: rca:Rcas_3735 colicin V production protein YP_001545333.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: gme:Gmet_0135 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domains I, II, & III YP_001545334.1 KEGG: smd:Smed_5156 hypothetical protein YP_001545335.1 PFAM: aminotransferase class-III; KEGG: tpe:Tpen_0539 acetylornithine transaminase YP_001545336.1 KEGG: rca:Rcas_3341 hypothetical protein YP_001545337.1 PFAM: protein of unknown function DUF34; KEGG: pfu:PF1065 hypothetical protein YP_001545338.1 KEGG: rrs:RoseRS_4213 membrane protein TerC possibly involved in tellurium resistance-like protein YP_001545339.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001545340.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001545341.1 KEGG: mes:Meso_2703 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein YP_001545342.1 PFAM: protein of unknown function DUF909 YP_001545343.1 PFAM: protein of unknown function DUF909 YP_001545346.1 SMART: serine/threonine protein kinase; KEGG: dme:Dmel_CG17528 CG17528 YP_001545347.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cth:Cthe_0638 FHA domain containing protein YP_001545350.1 PFAM: protein of unknown function DUF909; KEGG: ent:Ent638_0148 hypothetical protein YP_001545352.1 KEGG: bam:Bamb_1193 hypothetical protein YP_001545356.1 PFAM: Forkhead-associated protein; von Willebrand factor type A; KEGG: sai:Saci_1210 hypothetical protein YP_001545357.1 PFAM: dehydrogenase E1 component; KEGG: gtn:GTNG_2307 2-oxoisovalerate dehydrogenase alpha subunit YP_001545358.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: ssp:SSP1239 branched-chain alpha-keto acid dehydrogenase E1 beta subunit YP_001545359.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rca:Rcas_2804 catalytic domain of components of various dehydrogenase complexes YP_001545360.1 PFAM: major facilitator superfamily MFS_1; KEGG: dra:DR_1743 fosmidomycin resistance protein YP_001545361.1 PFAM: glycosyl transferase 2; KEGG: rca:Rcas_1701 glycosyl transferase 2 YP_001545362.1 PFAM: glycosyl transferase 2; KEGG: rca:Rcas_1700 glycosyl transferase 2 YP_001545363.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_1416 dTDP-4-dehydrorhamnose reductase YP_001545364.1 KEGG: cps:CPS_0111 hypothetical protein YP_001545365.1 KEGG: rrs:RoseRS_2786 hypothetical protein YP_001545366.1 KEGG: rrs:RoseRS_2786 hypothetical protein YP_001545367.1 KEGG: rrs:RoseRS_2786 hypothetical protein YP_001545368.1 KEGG: rrs:RoseRS_1428 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001545369.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mvn:Mevan_1583 UDP-N-acetylglucosamine 2-epimerase YP_001545370.1 PFAM: lipolytic protein G-D-S-L family YP_001545371.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa42490 ABC transporter ATP-binding protein YP_001545372.1 PFAM: protein of unknown function DUF214; KEGG: cac:CAC3584 predicted permease YP_001545373.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: bbt:BBta_1164 phosphodiesterase (YfcE) YP_001545374.1 PFAM: aldo/keto reductase; KEGG: rle:RL3415 oxidoreductase YP_001545375.1 PFAM: regulatory protein TetR; KEGG: sen:SACE_3302 TetR-family transcriptional regulator YP_001545376.1 KEGG: stp:Strop_0212 hypothetical protein YP_001545378.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: rca:Rcas_1484 CobB/CobQ domain protein glutamine amidotransferase YP_001545380.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pat:Patl_2139 short-chain dehydrogenase/reductase SDR YP_001545381.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: rca:Rcas_2466 polynucleotide adenylyltransferase region YP_001545382.1 KEGG: pat:Patl_1035 peptidase S8 and S53, subtilisin, kexin, sedolisin; TIGRFAM: conserved repeat domain; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein YP_001545386.1 PFAM: peptidase M16 domain protein; KEGG: rrs:RoseRS_0397 peptidase M16 domain protein YP_001545387.1 KEGG: rrs:RoseRS_4537 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_001545388.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rrs:RoseRS_3299 FAD dependent oxidoreductase YP_001545389.1 PFAM: protein of unknown function DUF1232; KEGG: reh:H16_A2205 hypothetical membrane protein YP_001545390.1 KEGG: rrs:RoseRS_2749 tetratricopeptide TPR_2 repeat protein YP_001545391.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sde:Sde_0635 6-phosphogluconate dehydrogenase, decarboxylating YP_001545392.1 KEGG: mbu:Mbur_0235 hypothetical protein YP_001545393.1 KEGG: rca:Rcas_1834 tetratricopeptide TPR_2 repeat protein YP_001545394.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rca:Rcas_0979 carbamoyl-phosphate synthase L chain ATP-binding YP_001545396.1 KEGG: rrs:RoseRS_2175 N-acetylmuramoyl-L-alanine amidase, family 2 YP_001545397.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nmu:Nmul_A1707 haloacid dehalogenase-like hydrolase YP_001545398.1 PFAM: aminoglycoside phosphotransferase; KEGG: sat:SYN_02490 hypothetical cytosolic protein YP_001545399.1 KEGG: afm:AFUA_1G13230 conserved hypothetical protein YP_001545400.1 KEGG: rrs:RoseRS_3180 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase catalytic region YP_001545401.1 PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: rca:Rcas_2633 copper resistance protein CopC YP_001545402.1 TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: copper resistance protein CopC; KEGG: rca:Rcas_2634 copper resistance protein CopC YP_001545404.1 PFAM: cytochrome c class I; KEGG: net:Neut_0051 hypothetical protein YP_001545406.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: rca:Rcas_0855 chromosome segregation protein SMC YP_001545407.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oan:Oant_0007 GCN5-related N-acetyltransferase YP_001545408.1 PFAM: peptidase M29 aminopeptidase II; KEGG: rrs:RoseRS_2644 peptidase M29, aminopeptidase II YP_001545410.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: ngo:NGO0365 site-specific DNA-methyltransferase M.NgoVII YP_001545412.1 PFAM: glycoside hydrolase 9; cellulose-binding family II; glycoside hydrolase 9 domain protein Ig domain protein; KEGG: tfu:Tfu_1627 cellulase, cellulose 1,4-beta-cellobiosidase YP_001545413.1 PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: pap:PSPA7_4667 chitin-binding protein CbpD precursor YP_001545414.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: tcx:Tcr_1011 periplasmic ATP/GTP-binding protein YP_001545415.1 SMART: helix-turn-helix domain protein; KEGG: bay:RBAM_030730 hypothetical protein YP_001545416.1 PFAM: beta-lactamase domain protein; KEGG: gka:GK1996 hypothetical protein YP_001545417.1 KEGG: rrs:RoseRS_2927 hypothetical protein YP_001545419.1 KEGG: ade:Adeh_4059 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_001545420.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ana:alr4011 probable oxidoreductase YP_001545421.1 PFAM: cyclic nucleotide-binding; KEGG: ana:alr4010 hypothetical protein YP_001545422.1 KEGG: rrs:RoseRS_3660 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001545423.1 PFAM: extracellular solute-binding protein family 5; KEGG: rca:Rcas_0197 extracellular solute-binding protein family 5 YP_001545424.1 PFAM: metallophosphoesterase; KEGG: rme:Rmet_3220 metallophosphoesterase YP_001545425.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001545426.1 KEGG: rrs:RoseRS_3598 GatB/YqeY domain protein YP_001545427.1 KEGG: rrs:RoseRS_3597 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001545428.1 PFAM: protein of unknown function UPF0054; KEGG: rca:Rcas_4283 protein of unknown function UPF0054 YP_001545429.1 PFAM: diacylglycerol kinase; KEGG: rca:Rcas_4282 diacylglycerol kinase YP_001545430.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: rca:Rcas_3329 peptidase M14 carboxypeptidase A YP_001545431.1 PFAM: VanW family protein; KEGG: rca:Rcas_2379 VanW family protein YP_001545432.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: bcy:Bcer98_3589 PAP2 family protein YP_001545433.1 PFAM: thymidine kinase; KEGG: gtn:GTNG_3325 thymidine kinase YP_001545434.1 PFAM: ribosomal protein L31; KEGG: rca:Rcas_2003 ribosomal protein L31 YP_001545435.1 involved in the peptidyltransferase reaction during translation YP_001545436.1 PFAM: ribosomal protein L21; KEGG: rca:Rcas_2001 ribosomal protein L21 YP_001545437.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: gvi:glr0075 sugar-non-specific nuclease NucA homolog YP_001545438.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA4366 ABC transporter, ATP-binding protein YP_001545439.1 KEGG: mba:Mbar_A1046 ABC-2 type transport system permease YP_001545440.1 KEGG: mac:MA4365 conserved hypothetical protein YP_001545441.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: oih:OB1081 acylaminoacyl-peptidase YP_001545442.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: rrs:RoseRS_3933 thiamine pyrophosphokinase YP_001545443.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_2255 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001545444.1 PFAM: glycosyl transferase 2; KEGG: sen:SACE_6476 glycosyltransferase domain containing protein YP_001545445.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rrs:RoseRS_0656 endonuclease/exonuclease/phosphatase YP_001545446.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0096 ABC branched chain amino acid family transporter, fused inner membrane subunits YP_001545447.1 PFAM: Polyphosphate kinase; KEGG: rca:Rcas_3540 polyphosphate kinase YP_001545448.1 KEGG: rca:Rcas_3877 hypothetical protein YP_001545449.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_0676 anti-sigma-factor antagonist YP_001545450.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rca:Rcas_0675 anti-sigma regulatory factor, serine/threonine protein kinase YP_001545451.1 PFAM: NADPH-dependent FMN reductase; KEGG: pap:PSPA7_4174 hypothetical protein YP_001545452.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rxy:Rxyl_1055 glyoxalase/bleomycin resistance protein/dioxygenase YP_001545453.1 PFAM: phospholipase/Carboxylesterase; KEGG: hma:rrnAC1163 phospholipase/carboxylesterase YP_001545454.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001545455.1 PFAM: glycosyl transferase 2; KEGG: rrs:RoseRS_3682 glycosyl transferase, family 2 YP_001545456.1 PFAM: Septum formation initiator; KEGG: rca:Rcas_1330 septum formation initiator YP_001545457.1 PFAM: protein of unknown function DUF583; KEGG: rca:Rcas_1331 protein of unknown function DUF583 YP_001545458.1 KEGG: cth:Cthe_2379 hypothetical protein YP_001545459.1 PFAM: Ribosomal small subunit Rsm22; KEGG: rpb:RPB_1065 hypothetical protein YP_001545460.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rrs:RoseRS_2111 iron-sulfur cluster assembly accessory protein YP_001545461.1 PFAM: VanZ family protein; KEGG: lxx:Lxx09000 hypothetical protein YP_001545463.1 SMART: Rhodanese domain protein; KEGG: sus:Acid_4923 rhodanese domain protein YP_001545464.1 PFAM: protein of unknown function DUF309; KEGG: rca:Rcas_1756 protein of unknown function DUF309 YP_001545465.1 KEGG: rrs:RoseRS_0702 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region YP_001545466.1 PFAM: Methyltransferase type 11; KEGG: rca:Rcas_1755 methyltransferase type 11 YP_001545467.1 KEGG: rrs:RoseRS_2115 hypothetical protein YP_001545468.1 PFAM: regulatory protein MerR; cobalamin B12-binding domain protein; KEGG: rca:Rcas_1753 regulatory protein MerR YP_001545469.1 PFAM: Squalene/phytoene synthase; KEGG: rrs:RoseRS_2117 squalene/phytoene synthase YP_001545470.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: det:DET1324 NADH dehydrogenase / NADH dehydrogenase YP_001545471.1 TIGRFAM: calcium/proton antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: rca:Rcas_3782 calcium/proton antiporter, CaCA family YP_001545472.1 PFAM: Integral membrane protein TerC; KEGG: gme:Gmet_1782 integral membrane protein TerC YP_001545473.1 KEGG: rrs:RoseRS_3009 transcriptional regulator-like protein YP_001545474.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: rrs:RoseRS_1301 DNA repair protein RecO YP_001545475.1 PFAM: membrane-flanked domain; KEGG: rca:Rcas_1656 membrane-flanked domain YP_001545476.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase 2; KEGG: rrs:RoseRS_1299 inosine guanosine and xanthosine phosphorylase YP_001545477.1 PFAM: SCP-like extracellular; KEGG: stp:Strop_1289 allergen V5/TPX-1 family protein YP_001545478.1 PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; KEGG: mxa:MXAN_2799 mechanosensitive ion channel/cyclic nucleotide-binding domain protein YP_001545479.1 PFAM: histidine triad (HIT) protein; KEGG: sto:ST0296 hypothetical bis(5'-adenosyl)-triphosphatase YP_001545480.1 KEGG: hwa:HQ1193A probable cell surface glycoprotein YP_001545481.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001545482.1 KEGG: cme:CMI070C similar to syntaxin binding protein Pfam: Toxin_5 EGF_2 Thia_YuaJ Voltage_CLC DAP10 Sec1 Herpes_BLRF2 PROSITE: EGF_1 EGF_2 ARG_RICH PRO_RICH SER_RICH THR_RICH YP_001545483.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0753 heme exporter protein CcmA YP_001545484.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: rca:Rcas_4436 cytochrome c-type biogenesis protein CcmB YP_001545485.1 PFAM: cytochrome c assembly protein; KEGG: rrs:RoseRS_0755 cytochrome c assembly protein YP_001545487.1 KEGG: rca:Rcas_4439 hypothetical protein YP_001545488.1 PFAM: cytochrome c assembly protein; KEGG: rrs:RoseRS_0758 cytochrome c assembly protein YP_001545489.1 KEGG: rca:Rcas_4441 heat shock protein DnaJ domain protein YP_001545490.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: rca:Rcas_4444 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_001545491.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_4445 two component transcriptional regulator, winged helix family YP_001545492.1 TIGRFAM: polymorphic outer membrane protein; KEGG: rca:Rcas_2988 polymorphic outer membrane protein YP_001545493.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_2696 ABC transporter related YP_001545494.1 KEGG: rrs:RoseRS_4316 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_001545495.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sth:STH493 two-component sensor histidine kinase YP_001545496.1 PFAM: transposase IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family YP_001545497.1 PFAM: small multidrug resistance protein; KEGG: gvi:gll2987 sugE protein YP_001545498.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: mgi:Mflv_4861 transcriptional regulator, AsnC family YP_001545499.1 PFAM: VanW family protein; KEGG: rca:Rcas_0036 VanW family protein YP_001545501.1 KEGG: mjl:Mjls_2514 hypothetical protein YP_001545506.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; GAF domain protein; KEGG: rca:Rcas_0550 anti-sigma-factor antagonist YP_001545507.1 PFAM: GAF domain protein; KEGG: rca:Rcas_0621 anti-sigma-factor antagonist YP_001545508.1 KEGG: dsy:DSY1559 hypothetical protein YP_001545509.1 KEGG: rca:Rcas_3881 hypothetical protein YP_001545510.1 KEGG: rrs:RoseRS_1978 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_001545511.1 PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: rrs:RoseRS_0207 phosphoribosyl-AMP cyclohydrolase YP_001545512.1 KEGG: gka:GK0267 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region YP_001545513.1 KEGG: mxa:MXAN_1759 hypothetical protein YP_001545514.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_3549 ABC transporter related YP_001545516.1 KEGG: sen:SACE_6558 chitinase II; PFAM: glycoside hydrolase 18; Carbohydrate-binding family V/XII; SMART: chitinase II YP_001545517.1 PFAM: creatinase; peptidase M24; KEGG: rca:Rcas_4452 peptidase M24 YP_001545518.1 KEGG: mdo:100031833 similar to gag-pro-pol polyprotein YP_001545519.1 PFAM: helix-turn-helix domain protein; KEGG: ckl:CKL_3629 hypothetical protein YP_001545520.1 KEGG: hch:HCH_10009 BamHI-like type II restriction endonuclease YP_001545521.1 KEGG: hch:HCH_10009 BamHI-like type II restriction endonuclease YP_001545522.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: hch:HCH_02488 BamHI-like site-specific methyltransferase YP_001545523.1 KEGG: rxy:Rxyl_1082 hypothetical protein YP_001545524.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: det:DET0417 amino acid ABC transporter, ATP-binding protein YP_001545525.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_0464 amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine YP_001545526.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: smd:Smed_3102 extracellular solute-binding protein family 3 YP_001545527.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sth:STH33 similar to multidrug resistance protein variant YP_001545528.1 PFAM: homogentisate 12-dioxygenase; Cupin 2 conserved barrel domain protein; KEGG: bcy:Bcer98_0230 homogentisate 12-dioxygenase YP_001545529.1 PFAM: transcriptional regulator TrmB; KEGG: sus:Acid_1756 transcriptional regulator, TrmB YP_001545530.1 KEGG: bcy:Bcer98_0228 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001545531.1 PFAM: regulatory protein LuxR; KEGG: bvi:Bcep1808_1624 response regulator receiver protein YP_001545532.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sdn:Sden_1243 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_001545534.1 PFAM: transcriptional activator domain; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3701 transcriptional regulator, SARP family YP_001545535.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ter:Tery_2553 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001545536.1 TIGRFAM: esterase, PHB depolymerase; KEGG: eba:ebA2902 poly(3-hydroxybutyrate) depolymerase YP_001545537.1 PFAM: beta-lactamase domain protein; KEGG: rrs:RoseRS_4309 beta-lactamase domain protein YP_001545538.1 KEGG: rrs:RoseRS_4310 hypothetical protein YP_001545539.1 KEGG: bay:RBAM_006020 hypothetical protein YP_001545540.1 PFAM: peptidase M23B; KEGG: rca:Rcas_0038 peptidase M23B YP_001545541.1 PFAM: biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: bcl:ABC2449 branched-chain alpha-keto acid dehydrogenase E2 component YP_001545542.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0988 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001545543.1 KEGG: rrs:RoseRS_1303 hypothetical protein YP_001545545.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_2616 short-chain dehydrogenase/reductase SDR YP_001545546.1 KEGG: rxy:Rxyl_2617 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_001545547.1 PFAM: aminoglycoside phosphotransferase; KEGG: rca:Rcas_4220 aminoglycoside phosphotransferase YP_001545551.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: tfu:Tfu_0389 methionyl-tRNA synthetase, class Ia YP_001545552.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gtn:GTNG_2609 probable ABC transporter ATP-binding protein YP_001545553.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_2417 binding-protein-dependent transport systems inner membrane component YP_001545554.1 PFAM: luciferase; KEGG: ava:Ava_5016 aliphatic sulfonate monooxygenase YP_001545555.1 KEGG: gtn:GTNG_2611 sulfonate binding protein precursor; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3 YP_001545556.1 PFAM: NADPH-dependent FMN reductase; KEGG: ppf:Pput_0251 FMN reductase YP_001545557.1 PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_0481 conserved hypothetical protein 374 YP_001545558.1 KEGG: rrs:RoseRS_0482 hypothetical protein YP_001545559.1 PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_0089 conserved hypothetical protein 374 YP_001545560.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_0088 amine oxidase YP_001545561.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: gtn:GTNG_2519 S-adenosylmethionine:tRNAribosyltransferase-isomerase YP_001545562.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001545563.1 KEGG: rca:Rcas_2430 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase YP_001545564.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_3032 integral membrane sensor signal transduction histidine kinase YP_001545565.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_2290 two component transcriptional regulator, winged helix family YP_001545566.1 PFAM: protein of unknown function UPF0118; KEGG: syf:Synpcc7942_1113 hypothetical protein YP_001545567.1 PFAM: protein of unknown function UPF0118; KEGG: btl:BALH_3975 possible permease YP_001545568.1 PFAM: ribonuclease BN; KEGG: ana:alr3393 similar to serum-resistance protein BrkB YP_001545569.1 KEGG: osa:4324628 Os01g0750600 YP_001545570.1 PFAM: aminotransferase class I and II; KEGG: bsu:BG10744 aminotransferase YP_001545571.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_2751 anti-sigma-factor antagonist YP_001545572.1 PFAM: peptidase M16 domain protein; KEGG: sth:STH913 peptidase YP_001545573.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: nca:Noca_3292 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_001545574.1 PFAM: transcriptional regulator PadR family protein; KEGG: ssa:SSA_1645 hypothetical protein YP_001545575.1 PFAM: alpha/beta hydrolase fold; KEGG: rci:RCIX982 hydrolase (alpha/beta fold family) YP_001545576.1 KEGG: chu:CHU_3113 membrane protein YP_001545577.1 KEGG: chu:CHU_3112 hypothetical protein YP_001545578.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: dge:Dgeo_2670 glycosyl hydrolase 98, carbohydrate binding module YP_001545580.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: rxy:Rxyl_0231 phosphoesterase, PA-phosphatase related YP_001545581.1 PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_1963 FAD dependent oxidoreductase YP_001545582.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase 16; PT repeat-containing protein; KEGG: sma:SAV1800 secreted protein YP_001545583.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: mxa:MXAN_0062 hypothetical protein YP_001545584.1 KEGG: dra:DR_1914 hypothetical protein YP_001545585.1 KEGG: gfo:GFO_0023 secreted protein containing thrombospondin 3 repeats YP_001545586.1 PFAM: glycoside hydrolase 5; cellulose-binding family II; KEGG: tfu:Tfu_2712 similar to endoglucanase YP_001545587.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bsu:BG11976 RNA polymerase ECF-type sigma factor YP_001545588.1 KEGG: asa:ASA_0574 flavin-binding monooxygenase involved in arsenic resistance YP_001545589.1 PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0632 major facilitator superfamily MFS_1 YP_001545590.1 KEGG: xau:Xaut_3968 secreted protein YP_001545593.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: rxy:Rxyl_2971 HAD-superfamily hydrolase subfamily IIB YP_001545594.1 KEGG: mxa:MXAN_3684 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001545595.1 PFAM: glycosyl transferase 20; KEGG: sat:SYN_02628 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_001545596.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: rrs:RoseRS_3456 metal dependent phophohydrolase YP_001545597.1 KEGG: rrs:RoseRS_1472 hypothetical protein YP_001545598.1 PFAM: glycoside hydrolase 37; KEGG: gka:GK1678 cytoplasmic trehalase (alpha,alpha-trehalose glucohydrolase) YP_001545599.1 PFAM: peptidase M20; KEGG: rrs:RoseRS_0094 peptidase M20 YP_001545600.1 KEGG: rfr:Rfer_2484 hypothetical protein YP_001545601.1 KEGG: rca:Rcas_0058 hypothetical protein YP_001545602.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: rca:Rcas_1818 peptidase M50 YP_001545603.1 KEGG: rrs:RoseRS_2602 hypothetical protein YP_001545604.1 PFAM: protein of unknown function DUF83; KEGG: rrs:RoseRS_2603 hypothetical protein YP_001545605.1 KEGG: rca:Rcas_1814 hypothetical protein YP_001545606.1 KEGG: rba:RB8806 6-pyruvoyl tetrahydrobiopterin synthase YP_001545608.1 KEGG: rrs:RoseRS_0764 dihydroorotate dehydrogenase YP_001545609.1 PFAM: response regulator receiver; KEGG: rca:Rcas_3177 adenylate/guanylate cyclase with GAF and PAS/PAC sensors YP_001545610.1 PFAM: transport system permease; ABC-3 protein; KEGG: nmu:Nmul_A1230 ABC-3 YP_001545611.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A1231 ABC transporter related YP_001545612.1 PFAM: periplasmic solute binding protein; KEGG: nmu:Nmul_A1232 periplasmic solute binding protein YP_001545613.1 TIGRFAM: phosphopentomutase; PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein; KEGG: pth:PTH_1211 hosphopentomutase YP_001545614.1 PFAM: aldo/keto reductase; KEGG: pap:PSPA7_1320 probable oxidoreductase YP_001545615.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; protease-associated PA domain protein; protein of unknown function DUF1034; KEGG: shw:Sputw3181_3341 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001545616.1 KEGG: rrs:RoseRS_0110 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD YP_001545618.1 KEGG: rca:Rcas_0350 hypothetical protein YP_001545619.1 PFAM: peptidase C2 calpain; KEGG: ana:all1084 unknown protein YP_001545621.1 TIGRFAM: valyl-tRNA synthetase; KEGG: rca:Rcas_0367 valyl-tRNA synthetase YP_001545622.1 KEGG: hma:rrnAC2485 hypothetical protein YP_001545623.1 PFAM: Spermine synthase; KEGG: bam:Bamb_4273 spermine synthase YP_001545624.1 PFAM: Methicillin resistance protein; KEGG: mta:Moth_2408 methicillin resistance protein YP_001545626.1 KEGG: syx:SynWH7803_1189 uncharacterized membrane protein YP_001545628.1 PFAM: S-adenosylmethionine decarboxylase related; KEGG: sen:SACE_1267 S-adenosylmethionine decarboxylase proenzyme YP_001545629.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: fjo:Fjoh_3925 GAF sensor hybrid histidine kinase YP_001545630.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: cfa:481103 sulfite oxidase YP_001545631.1 PFAM: Radical SAM domain protein; KEGG: rca:Rcas_3524 pyruvate-formate lyase-activating enzyme-like protein YP_001545632.1 PFAM: AMMECR1 domain protein; KEGG: chy:CHY_2268 hypothetical protein YP_001545633.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: bsu:BG11701 similar to unknown proteins from B. subtilis YP_001545634.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rrs:RoseRS_1526 glycine cleavage system T protein YP_001545635.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001545636.1 PFAM: glycine cleavage system P-protein; KEGG: rca:Rcas_2283 glycine dehydrogenase (decarboxylating) YP_001545637.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001545638.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001545639.1 PFAM: alpha/beta hydrolase fold; KEGG: rba:RB4968 probable EphA protein-Mycobacterium tuberculosis (strain H37RV) YP_001545640.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: lmf:LMOf2365_0392 hypothetical protein YP_001545642.1 PFAM: beta-lactamase; KEGG: reh:H16_B1574 beta-lactamase class C YP_001545643.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfu:PF1889 daunorubicin resistance ATP-binding protein drrA YP_001545644.1 PFAM: ABC-2 type transporter; KEGG: ape:APE_2512 ABC-2 type transport system permease YP_001545645.1 PFAM: ABC-2 type transporter; KEGG: rxy:Rxyl_0406 ABC-2 type transporter YP_001545646.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mxa:MXAN_2532 oxidoreductase, zinc-binding dehydrogenase YP_001545647.1 PFAM: regulatory protein MarR; KEGG: dvl:Dvul_0515 transcriptional regulator, MarR family YP_001545648.1 PFAM: peptidase T2 asparaginase 2; KEGG: rrs:RoseRS_0104 asparaginase YP_001545649.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rxy:Rxyl_0055 NAD-dependent epimerase/dehydratase YP_001545650.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rca:Rcas_0252 transcriptional regulator, Crp/Fnr family YP_001545651.1 PFAM: protein of unknown function DUF820; KEGG: rba:RB8456 hypothetical protein YP_001545652.1 PFAM: metallophosphoesterase; KEGG: rca:Rcas_1877 metallophosphoesterase YP_001545653.1 PFAM: phosphoribosyltransferase; KEGG: ttj:TTHA0535 purine phosphoribosyltransferase (xanthine-guanine phosphoribosyltransferase) YP_001545654.1 TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: rca:Rcas_1987 orotate phosphoribosyltransferase YP_001545655.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2447 transcriptional regulator, TetR family YP_001545656.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001545657.1 PFAM: cytochrome P450; KEGG: nmu:Nmul_A2167 cytochrome P450 YP_001545658.1 KEGG: ava:Ava_0604 hypothetical protein YP_001545659.1 KEGG: ana:alr0811 unknown protein YP_001545663.1 PFAM: regulatory protein MarR; KEGG: bha:BH2164 hypothetical protein YP_001545664.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fal:FRAAL4695 oxidoreductase, short chain dehydrogenase YP_001545666.1 TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mem:Memar_0650 NifC-like ABC-type porter YP_001545667.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rci:RCIX1621 ABC-type molybdenum import system, periplasmic component YP_001545668.1 KEGG: stp:Strop_4401 hypothetical protein YP_001545669.1 KEGG: rca:Rcas_0282 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001545670.1 KEGG: bcl:ABC1986 general stress protein GSP160 YP_001545672.1 PFAM: 5'-Nucleotidase domain protein; KEGG: bat:BAS2939 5'-nucleotidase YP_001545673.1 PFAM: peptidase M23B; KEGG: rrs:RoseRS_0052 peptidase M23B YP_001545674.1 KEGG: syf:Synpcc7942_1526 hypothetical protein YP_001545675.1 KEGG: rrs:RoseRS_3908 hypothetical protein YP_001545676.1 PFAM: peptidase M48 Ste24p; KEGG: stp:Strop_2298 peptidase M48, Ste24p YP_001545677.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: rxy:Rxyl_1098 thermostable carboxypeptidase 1 YP_001545678.1 KEGG: rca:Rcas_2645 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase 77 YP_001545680.1 PFAM: NHL repeat containing protein; KEGG: mba:Mbar_A0416 hypothetical protein YP_001545681.1 PFAM: histidine kinase HAMP region domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_2499 protein serine phosphatase with GAF(s) sensor(s) YP_001545682.1 KEGG: cvi:CV_1441 hypothetical protein YP_001545683.1 KEGG: dge:Dgeo_1400 hypothetical protein YP_001545684.1 PFAM: phospholipase/Carboxylesterase; KEGG: cya:CYA_0870 phospholipase/carboxylesterase YP_001545685.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rrs:RoseRS_0542 short-chain dehydrogenase/reductase SDR YP_001545686.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sth:STH1434 hypothetical protein YP_001545688.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO5923 conserved hypothetical protein with a TPR motif and a caspase domain; signal peptide YP_001545689.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rrs:RoseRS_4477 cobalamin (vitamin B12) biosynthesis CbiX protein YP_001545690.1 PFAM: Endonuclease V; KEGG: ava:Ava_0819 endonuclease V YP_001545691.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pae:PA3534 probable oxidoreductase YP_001545692.1 TIGRFAM: small GTP-binding protein; GTP1/OBG protein; PFAM: GTP-binding protein HSR1-related; KEGG: rrs:RoseRS_2334 small GTP-binding protein YP_001545693.1 KEGG: aor:AO090023000918 predicted protein Pfam: DPBB_1 PROSITE: PRO_RICH THR_RICH YP_001545694.1 PFAM: N-acetylmuramoyl-L-alanine amidase 2; KEGG: rca:Rcas_0212 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_001545695.1 PFAM: Phosphoglycerate mutase; KEGG: cmi:CMM_2041 hypothetical protein YP_001545696.1 KEGG: rca:Rcas_4226 integral membrane sensor signal transduction histidine kinase YP_001545697.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; KEGG: rrs:RoseRS_1935 anti-sigma-factor antagonist YP_001545698.1 PFAM: NMT1/THI5 like domain protein; KEGG: pna:Pnap_2656 multi-sensor signal transduction histidine kinase YP_001545699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_5911 short-chain dehydrogenase/reductase SDR YP_001545700.1 PFAM: protein of unknown function DUF1211; KEGG: cvi:CV_0104 hypothetical protein YP_001545701.1 KEGG: cbf:CLI_3529 hypothetical protein YP_001545703.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mta:Moth_1475 anti-sigma-factor antagonist (STAS) domain protein YP_001545704.1 PFAM: protein of unknown function DUF1003; KEGG: plt:Plut_1664 hypothetical protein YP_001545706.1 PFAM: ATP-binding region ATPase domain protein; KEGG: dar:Daro_3177 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal YP_001545708.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_2355 GCN5-related N-acetyltransferase YP_001545709.1 KEGG: rle:RL3294 hypothetical protein YP_001545710.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate YP_001545711.1 PFAM: phosphoribosyltransferase; KEGG: mxa:MXAN_1075 phosphoribosyl transferase domain protein YP_001545713.1 PFAM: NUDIX hydrolase; KEGG: pca:Pcar_2673 ADP-ribose pyrophosphatase YP_001545714.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_4257 hypothetical protein YP_001545715.1 KEGG: sit:TM1040_3433 hypothetical protein YP_001545716.1 PFAM: protein of unknown function DUF1006; KEGG: rrs:RoseRS_3033 protein of unknown function DUF1006 YP_001545717.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mfa:Mfla_2206 alcohol dehydrogenase, zinc-binding YP_001545718.1 KEGG: bja:blr0930 hypothetical protein YP_001545719.1 KEGG: rca:Rcas_2373 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001545720.1 KEGG: fjo:Fjoh_0235 hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein YP_001545721.1 PFAM: regulatory protein TetR; KEGG: hch:HCH_05799 transcriptional regulator YP_001545722.1 PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_0197 acylglycerol lipase YP_001545723.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_2261 glycosyl transferase group 1 YP_001545724.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: rrs:RoseRS_3593 phospholipase D/transphosphatidylase YP_001545726.1 PFAM: protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: rca:Rcas_3040 serine/threonine protein kinase with PASTA sensor(s) YP_001545727.1 KEGG: rrs:RoseRS_2632 exonuclease-like protein YP_001545728.1 KEGG: rrs:RoseRS_1455 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like YP_001545729.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rca:Rcas_0838 transcriptional regulator, BadM/Rrf2 family YP_001545730.1 KEGG: rca:Rcas_1639 hypothetical protein YP_001545731.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; L-seryl-tRNA selenium transferase; KEGG: ade:Adeh_0412 L-seryl-tRNA(sec) selenium transferase YP_001545732.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3659 protein kinase YP_001545733.1 PFAM: Forkhead-associated protein; transcriptional regulator domain protein; KEGG: rrs:RoseRS_3658 two component transcriptional regulator, winged helix family YP_001545734.1 PFAM: Dynamin family protein; GTP-binding protein HSR1-related; Miro domain protein; KEGG: rca:Rcas_1377 dynamin family protein YP_001545735.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gka:GK0707 alpha-amylase YP_001545736.1 PFAM: protein of unknown function DUF952; KEGG: dra:DR_0242 hypothetical protein YP_001545737.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: rrs:RoseRS_0727 isoleucyl-tRNA synthetase YP_001545739.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001545741.1 PFAM: SNARE associated Golgi protein; KEGG: sth:STH2141 alkaline phosphatase YP_001545742.1 PFAM: Abortive infection protein; KEGG: sus:Acid_2705 abortive infection protein YP_001545745.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001545747.1 PFAM: Ig family protein; KEGG: ava:Ava_2541 alkaline phosphatase-like YP_001545748.1 KEGG: rrs:RoseRS_3686 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_001545749.1 PFAM: metallophosphoesterase; KEGG: aba:Acid345_1977 metallophosphoesterase YP_001545750.1 KEGG: rba:RB9591 hypothetical protein YP_001545751.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_1976 methyltransferase type 12 YP_001545752.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_3508 anti-sigma-factor antagonist YP_001545753.1 PFAM: Terpene synthase metal-binding domain protein; KEGG: rca:Rcas_0622 terpene synthase metal-binding domain protein YP_001545754.1 PFAM: Terpene synthase metal-binding domain protein; KEGG: rrs:RoseRS_3509 terpene synthase, metal-binding domain protein YP_001545755.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: oih:OB0702 para-aminobenzoate synthetase component I / 4-amino-4-deoxychorismate lyase YP_001545756.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001545757.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001545759.1 PFAM: Saccharopine dehydrogenase; KEGG: mxa:MXAN_0831 saccharopine dehydrogenase YP_001545760.1 PFAM: regulatory protein ArsR; KEGG: dar:Daro_0401 regulatory protein, ArsR YP_001545761.1 PFAM: Domain of unknown function DUF1858; KEGG: nis:NIS_1810 hypothetical protein YP_001545762.1 KEGG: rca:Rcas_3439 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001545763.1 PFAM: response regulator receiver; KEGG: syn:slr1982 two-component response regulator (CheY subfamily) YP_001545764.1 PFAM: conserved hypothetical protein; KEGG: rca:Rcas_4073 SAM-dependent methyltransferase YP_001545765.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: rrs:RoseRS_4548 DNA mismatch repair protein MutL YP_001545767.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ava:Ava_C0104 cupin YP_001545768.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_1896 ABC transporter related YP_001545769.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2978 ABC transporter related YP_001545770.1 PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_2030 inner-membrane translocator YP_001545771.1 PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_2031 inner-membrane translocator YP_001545772.1 PFAM: Extracellular ligand-binding receptor; KEGG: rxy:Rxyl_2032 extracellular ligand-binding receptor YP_001545773.1 KEGG: rca:Rcas_3121 hypothetical protein YP_001545774.1 KEGG: hma:rrnAC2485 hypothetical protein YP_001545775.1 PFAM: Indigoidine synthase A family protein; KEGG: rrs:RoseRS_1375 indigoidine synthase A family protein YP_001545776.1 KEGG: dra:DR_1098 hypothetical protein YP_001545777.1 KEGG: dra:DR_1098 hypothetical protein YP_001545778.1 PFAM: ABC-2 type transporter; KEGG: rxy:Rxyl_0438 ABC-2 type transporter YP_001545779.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0439 ABC transporter related YP_001545780.1 PFAM: regulatory protein TetR; KEGG: rxy:Rxyl_0440 transcriptional regulator, TetR family YP_001545781.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mbu:Mbur_0884 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001545782.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; CHASE4 domain protein; KEGG: drm:Dred_1552 diguanylate cyclase with PAS/PAC sensor YP_001545784.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rrs:RoseRS_0463 heavy metal translocating P-type ATPase YP_001545785.1 PFAM: ferric-uptake regulator; KEGG: oih:OB0905 transcriptional regulator (Fur family) YP_001545786.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_3876 multi-sensor hybrid histidine kinase YP_001545787.1 KEGG: rrs:RoseRS_2562 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_001545788.1 KEGG: rca:Rcas_1851 glucose-6-P dehydrogenase subunit-like protein YP_001545789.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: aba:Acid345_2814 6-phosphogluconolactonase YP_001545790.1 PFAM: LmbE family protein; KEGG: tfu:Tfu_0486 hypothetical protein YP_001545791.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: rca:Rcas_3523 signal peptidase I YP_001545792.1 KEGG: rrs:RoseRS_2149 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001545793.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: rrs:RoseRS_0321 hypoxanthine phosphoribosyltransferase YP_001545794.1 KEGG: rca:Rcas_0865 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001545795.1 KEGG: rca:Rcas_0717 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001545796.1 PFAM: protein of unknown function DUF28; KEGG: rca:Rcas_0718 protein of unknown function DUF28 YP_001545797.1 PFAM: Forkhead-associated protein; KEGG: rca:Rcas_2125 FHA domain containing protein YP_001545798.1 KEGG: rrs:RoseRS_3497 von Willebrand factor, type A YP_001545799.1 SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3498 protein kinase YP_001545800.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_3499 PASTA domain containing protein YP_001545804.1 PFAM: peptidase domain protein; KEGG: ava:Ava_3643 Na-Ca exchanger/integrin-beta4 YP_001545805.1 PFAM: protein kinase; Thrombospondin type 3 repeat; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3659 protein kinase YP_001545806.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_0525 serine/threonine protein kinase with TPR repeats YP_001545807.1 KEGG: sus:Acid_4355 hypothetical protein YP_001545808.1 PFAM: domain of unknown function DUF1730; KEGG: pla:Plav_0200 domain of unknown function DUF1730 YP_001545809.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mag:amb3988 modification methylase CcrmI YP_001545810.1 PFAM: ABC-3 protein; KEGG: rxy:Rxyl_1143 ABC-3 YP_001545811.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3069 ABC transporter related YP_001545812.1 PFAM: periplasmic solute binding protein; KEGG: rxy:Rxyl_1141 periplasmic solute binding protein YP_001545813.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_2571 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001545814.1 KEGG: aba:Acid345_4155 transcriptional regulatory protein-like YP_001545815.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: ter:Tery_3348 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_001545816.1 PFAM: basic membrane lipoprotein; KEGG: rca:Rcas_1631 basic membrane lipoprotein YP_001545817.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_1634 ABC transporter related YP_001545818.1 PFAM: inner-membrane translocator; KEGG: rca:Rcas_1632 inner-membrane translocator YP_001545819.1 PFAM: inner-membrane translocator; KEGG: rca:Rcas_1633 inner-membrane translocator YP_001545820.1 KEGG: sco:SCO2616 hypothetical protein YP_001545821.1 KEGG: rrs:RoseRS_1019 hypothetical protein YP_001545822.1 PFAM: PGAP1 family protein; KEGG: sil:SPOA0123 hypothetical protein YP_001545823.1 PFAM: thiopurine S-methyltransferase; KEGG: cps:CPS_3096 thiopurine S-methyltransferase YP_001545824.1 PFAM: Protein of unknown function DUF1800; KEGG: rrs:RoseRS_2159 hypothetical protein YP_001545825.1 PFAM: protein of unknown function DUF1501; KEGG: rca:Rcas_3484 protein of unknown function DUF1501 YP_001545827.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: deh:cbdb_A1032 DNA-binding response regulator YP_001545828.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: chy:CHY_2566 sensor histidine kinase YP_001545829.1 PFAM: thioesterase superfamily protein; KEGG: gtn:GTNG_1412 ComA operon protein 2 YP_001545830.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mbn:Mboo_0281 HAD-superfamily subfamily IIA hydrolase like protein YP_001545831.1 PFAM: peptidase M50; KEGG: gbe:GbCGDNIH1_1257 membrane endopeptidase, M50 family YP_001545832.1 KEGG: rca:Rcas_4346 hypothetical protein YP_001545833.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mac:MA2108 LysE type translocator YP_001545834.1 PFAM: protein kinase; protein of unknown function DUF323; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1529 protein kinase YP_001545835.1 PFAM: isochorismatase hydrolase; KEGG: bce:BC2947 isochorismatase YP_001545836.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2270 ABC transporter related YP_001545837.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001545838.1 PFAM: cytochrome P450; KEGG: dra:DR_1723 cytochrome P450 YP_001545839.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rrs:RoseRS_1712 alpha amylase, catalytic region YP_001545840.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pla:Plav_3564 isoprenylcysteine carboxyl methyltransferase YP_001545841.1 KEGG: cya:CYA_2313 hypothetical protein YP_001545842.1 PFAM: hypothetical protein; Lytic transglycosylase catalytic; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_2690 lytic transglycosylase catalytic YP_001545843.1 KEGG: cvi:CV_1551 hypothetical protein YP_001545844.1 KEGG: mxa:MXAN_2849 hypothetical protein YP_001545845.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: rrs:RoseRS_3678 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_001545846.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001545847.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: rrs:RoseRS_3676 NADH (or F420H2) dehydrogenase, subunit C YP_001545848.1 KEGG: rrs:RoseRS_3675 NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa YP_001545849.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: rrs:RoseRS_3674 NADH-quinone oxidoreductase, E subunit YP_001545850.1 KEGG: rca:Rcas_3391 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_001545851.1 KEGG: dps:DP0024 hypothetical protein YP_001545852.1 KEGG: gur:Gura_1694 hypothetical protein YP_001545853.1 TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rca:Rcas_3389 NADH-quinone oxidoreductase, chain G YP_001545854.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: rrs:RoseRS_2236 NADH dehydrogenase (quinone) YP_001545855.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcy:Bcer98_2842 GCN5-related N-acetyltransferase YP_001545856.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_2287 short-chain dehydrogenase/reductase SDR YP_001545857.1 PFAM: FAD dependent oxidoreductase; KEGG: bba:Bd1837 oxidoreductase YP_001545858.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_4041 response regulator receiver protein YP_001545859.1 KEGG: sth:STH2789 hypothetical protein YP_001545861.1 PFAM: RNA binding S1 domain protein; KEGG: rca:Rcas_1422 RNA binding S1 domain protein YP_001545862.1 PFAM: von Willebrand factor type A; KEGG: rca:Rcas_1421 von Willebrand factor type A YP_001545863.1 KEGG: rca:Rcas_1420 magnesium chelatase; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_001545864.1 PFAM: protein of unknown function DUF1028; peptidoglycan binding; KEGG: gka:GK1588 hypothetical protein YP_001545865.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: asa:ASA_0498 ribosomal RNA small subunit methyltransferase C YP_001545866.1 PFAM: band 7 protein; KEGG: dra:DR_0482 B-cell receptor associated protein-related protein YP_001545867.1 PFAM: oxidoreductase molybdopterin binding; KEGG: rrs:RoseRS_1086 oxidoreductase, molybdopterin binding YP_001545868.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0484 multi-sensor signal transduction histidine kinase YP_001545869.1 TIGRFAM: protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: rrs:RoseRS_3983 protein-export membrane protein SecF YP_001545870.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: rca:Rcas_3326 protein-export membrane protein SecD YP_001545871.1 PFAM: peptidase M14 carboxypeptidase A; MAM protein; KEGG: stp:Strop_4082 peptidase M14, carboxypeptidase A YP_001545872.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: rca:Rcas_2140 regulatory protein, FmdB family YP_001545873.1 TIGRFAM: serine O-acetyltransferase; KEGG: rrs:RoseRS_3035 serine O-acetyltransferase YP_001545874.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001545875.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: rrs:RoseRS_3037 ribosomal protein L11 methyltransferase YP_001545876.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001545877.1 KEGG: rrs:RoseRS_3039 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001545878.1 catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine YP_001545879.1 KEGG: sma:SAV2150 hypothetical protein YP_001545880.1 PFAM: peptidase M29 aminopeptidase II; KEGG: rrs:RoseRS_2644 peptidase M29, aminopeptidase II YP_001545881.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: rrs:RoseRS_1255 oligoendopeptidase F YP_001545882.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1284 ABC transporter related YP_001545883.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_1285 protein of unknown function DUF95, transmembrane YP_001545884.1 KEGG: rrs:RoseRS_2176 hypothetical protein YP_001545886.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_3807 AAA ATPase, central domain protein YP_001545887.1 KEGG: gvi:glr2443 L-sorbosone dehydrogenase YP_001545888.1 KEGG: ent:Ent638_1535 hypothetical protein YP_001545889.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0221 anti-sigma-factor antagonist YP_001545890.1 PFAM: isochorismatase hydrolase; KEGG: sma:SAV1388 isochorismatase YP_001545891.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: rrs:RoseRS_3858 FAD linked oxidase domain protein YP_001545892.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: ava:Ava_4099 non-ribosomal peptide synthase YP_001545893.1 PFAM: glycosyl transferase group 1; KEGG: sus:Acid_4714 thioesterase YP_001545894.1 TIGRFAM: amino acid adenylation domain; PFAM: alpha/beta hydrolase fold; AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; major facilitator superfamily MFS_1; KEGG: cth:Cthe_1904 amino acid adenylation domain YP_001545895.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: mes:Meso_2583 4'-phosphopantetheinyl transferase YP_001545896.1 PFAM: polysaccharide deacetylase; KEGG: rca:Rcas_4141 polysaccharide deacetylase YP_001545897.1 PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_3367 ABC-2 type transporter YP_001545898.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0858 ABC transporter related YP_001545899.1 KEGG: rrs:RoseRS_1532 PT repeat-containing protein YP_001545900.1 PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_3900 conserved hypothetical protein 374 YP_001545901.1 PFAM: glycosyl transferase 2; KEGG: rca:Rcas_3212 glycosyl transferase 2 YP_001545902.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_A5712 transcriptional regulator, TetR family YP_001545903.1 KEGG: hch:HCH_03978 hypothetical protein YP_001545904.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: rca:Rcas_3421 UDP-glucose/GDP-mannose dehydrogenase YP_001545905.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_4079 ribosomal-protein-alanine acetyltransferase YP_001545906.1 KEGG: rrs:RoseRS_0877 hypothetical protein YP_001545907.1 KEGG: rca:Rcas_0862 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_001545908.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pth:PTH_1618 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001545909.1 KEGG: rrs:RoseRS_0323 hypothetical protein YP_001545910.1 KEGG: rca:Rcas_0864 hypothetical protein YP_001545911.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_3059 ABC transporter related YP_001545912.1 KEGG: rca:Rcas_3060 hypothetical protein YP_001545913.1 PFAM: response regulator receiver; KEGG: rca:Rcas_1646 response regulator receiver sensor signal transduction histidine kinase YP_001545914.1 KEGG: mbb:BCG_1420 transcriptional regulatory protein YP_001545916.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rca:Rcas_4105 thioredoxin YP_001545917.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: mpa:MAP1259 hypothetical protein YP_001545918.1 PFAM: SpoOM family protein; KEGG: ana:alr4153 sporulation-control protein Spo0M homolog YP_001545920.1 KEGG: rca:Rcas_0707 hypothetical protein YP_001545921.1 PFAM: aminotransferase class-III; KEGG: hch:HCH_06567 glutamate-1-semialdehyde aminotransferase YP_001545922.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_2533 short-chain dehydrogenase/reductase SDR YP_001545923.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0641 tetratricopeptide TPR_2 repeat protein YP_001545925.1 KEGG: rrs:RoseRS_2261 hypothetical protein YP_001545926.1 PFAM: regulatory protein TetR; KEGG: mxa:MXAN_4471 transcriptional regulator, TetR family YP_001545927.1 TIGRFAM: PAS sensor protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: syn:sll1365 hypothetical protein YP_001545928.1 PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2796 von Willebrand factor, type A YP_001545929.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_4117 serine/threonine protein kinase YP_001545931.1 KEGG: ppd:Ppro_2253 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001545932.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rca:Rcas_0434 cytochrome c biogenesis protein transmembrane region YP_001545933.1 PFAM: beta-lactamase domain protein; KEGG: rca:Rcas_0337 beta-lactamase domain protein YP_001545934.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_4565 stage II sporulation E family protein YP_001545935.1 KEGG: sth:STH2446 hypothetical protein YP_001545936.1 PFAM: Silent information regulator protein Sir2; KEGG: rca:Rcas_1593 silent information regulator protein Sir2 YP_001545937.1 PFAM: Silent information regulator protein Sir2; KEGG: rca:Rcas_1594 silent information regulator protein Sir2 YP_001545938.1 SMART: serine/threonine protein kinase; KEGG: rrs:RoseRS_1259 protein kinase YP_001545939.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cya:CYA_2254 cyclopropane-fatty-acyl-phospholipid synthase YP_001545940.1 PFAM: aminotransferase class V; KEGG: fjo:Fjoh_2795 aminotransferase, class V YP_001545941.1 PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_1554 alpha/beta hydrolase fold YP_001545942.1 PFAM: HEAT domain containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rca:Rcas_1245 PBS lyase heat domain protein repeat-containing protein YP_001545943.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: tel:tlr1102 FKBP-type peptidyl-prolyl cis-trans isomerase YP_001545944.1 PFAM: SMC domain protein; KEGG: rrs:RoseRS_0905 SMC domain protein YP_001545945.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gka:GK0942 Mg-protoporphyrin IX monomethyl ester oxidative cyclase YP_001545946.1 KEGG: rrs:RoseRS_2802 hypothetical protein YP_001545947.1 PFAM: DNA mismatch repair protein MutS domain protein; KEGG: gvi:gll4003 unknown protein YP_001545948.1 SMART: extracellular solute-binding protein family 3; KEGG: rca:Rcas_3278 extracellular solute-binding protein family 3 YP_001545949.1 KEGG: rca:Rcas_3881 hypothetical protein YP_001545950.1 TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bbt:BBta_6445 phytoene dehydrogenase (phytoene desaturase) YP_001545951.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rrs:RoseRS_2821 ParB-like partition protein YP_001545952.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_4547 protein phosphatase 2C domain protein YP_001545953.1 PFAM: ROK family protein; KEGG: mlo:mlr7234 glucokinase YP_001545954.1 PFAM: HpcH/HpaI aldolase; KEGG: rxy:Rxyl_2830 citryl-CoA lyase YP_001545955.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001545956.1 KEGG: rca:Rcas_2988 polymorphic outer membrane protein YP_001545957.1 KEGG: rca:Rcas_3029 hypothetical protein YP_001545958.1 KEGG: mxa:MXAN_3194 hypothetical protein YP_001545959.1 PFAM: CinA domain protein; KEGG: dsy:DSY1955 hypothetical protein YP_001545960.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rrs:RoseRS_1107 transcriptional regulator, AsnC family YP_001545961.1 KEGG: rca:Rcas_1678 hypothetical protein YP_001545962.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; blue (type 1) copper domain protein; KEGG: sfu:Sfum_2279 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001545964.1 KEGG: sco:SCO0564 hypothetical protein YP_001545965.1 PFAM: regulatory protein TetR; KEGG: fal:FRAAL0342 TetR-family transcriptional regulator YP_001545966.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: ava:Ava_3981 NAD-dependent epimerase/dehydratase YP_001545967.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001545968.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: rca:Rcas_4057 ATP-dependent Clp protease adaptor protein ClpS YP_001545969.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO0278 MutT domain containing protein YP_001545970.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: rrs:RoseRS_0823 preprotein translocase, SecA subunit YP_001545971.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001545972.1 PFAM: Phosphoglycerate mutase; KEGG: rrs:RoseRS_0245 phosphoglycerate mutase YP_001545973.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001545974.1 KEGG: cph:Cpha266_1975 hypothetical protein YP_001545975.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pfo:Pfl_0660 transcriptional regulator, MerR family YP_001545976.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rca:Rcas_3382 proton-translocating NADH-quinone oxidoreductase, chain N YP_001545977.1 KEGG: gur:Gura_4232 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001545978.1 KEGG: rrs:RoseRS_2232 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001545979.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rrs:RoseRS_2233 NADH-ubiquinone oxidoreductase, chain 4L YP_001545980.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: rca:Rcas_3386 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_001545981.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rca:Rcas_3387 NADH-quinone oxidoreductase, chain I YP_001545982.1 KEGG: hsa:4583 mucin 2, oligomeric mucus/gel-forming YP_001545983.1 PFAM: LmbE family protein; KEGG: rrs:RoseRS_0663 LmbE family protein YP_001545984.1 KEGG: rca:Rcas_4135 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase HD region YP_001545985.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001545986.1 KEGG: rca:Rcas_3351 hypothetical protein YP_001545987.1 KEGG: rrs:RoseRS_4062 hypothetical protein YP_001545988.1 KEGG: rrs:RoseRS_4061 hypothetical protein YP_001545989.1 KEGG: rrs:RoseRS_1899 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; Helicase-like, DEXD box c2 type; helicase c2; DEAD-like helicases YP_001545990.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase 51; penicillin-binding protein transpeptidase; KEGG: rrs:RoseRS_1948 penicillin-binding protein, 1A family YP_001545991.1 KEGG: rca:Rcas_1750 2-alkenal reductase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein YP_001545993.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001545994.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sth:STH1607 tRNA/rRNA methyltransferase YP_001545995.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: rca:Rcas_4451 signal transduction histidine kinase YP_001545996.1 PFAM: glycosyl transferase 2; KEGG: rrs:RoseRS_1291 glycosyl transferase, family 2 YP_001545997.1 KEGG: rrs:RoseRS_0605 hypothetical protein YP_001545999.1 KEGG: rca:Rcas_1294 hypothetical protein YP_001546000.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: rrs:RoseRS_2181 GTP-binding protein Era YP_001546001.1 PFAM: protein of unknown function DUF323; KEGG: rrs:RoseRS_2919 protein of unknown function DUF323 YP_001546003.1 PFAM: protein of unknown function DUF34; KEGG: dra:DR_2466 hypothetical protein YP_001546004.1 PFAM: protein of unknown function DUF343; KEGG: rrs:RoseRS_3442 protein of unknown function DUF343 YP_001546005.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rrs:RoseRS_3444 phosphoribosylanthranilate isomerase YP_001546006.1 PFAM: protein of unknown function DUF88; KEGG: rca:Rcas_4412 protein of unknown function DUF88 YP_001546007.1 PFAM: UbiA prenyltransferase; KEGG: rrs:RoseRS_2248 UbiA prenyltransferase YP_001546008.1 KEGG: mmr:Mmar10_0508 hypothetical protein YP_001546009.1 PFAM: thioesterase superfamily protein; KEGG: xcb:XC_4072 hypothetical protein YP_001546010.1 TIGRFAM: Quinone oxidoreductase PIG3; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: tfu:Tfu_0072 quinone oxidoreductase YP_001546011.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001546012.1 PFAM: ROK family protein; KEGG: rxy:Rxyl_1172 ROK domain containing protein YP_001546016.1 PFAM: protein of unknown function DUF909; KEGG: mmu:100041170 similar to loricrin YP_001546020.1 PFAM: WD-40 repeat protein; KEGG: ani:AN8468.2 hypothetical protein Pfam: APS_kinase NACHT AAA EcoRII-C eIF2A WD40 DPPIV_N SGL DUF1513 Cytochrom_D1 PROSITE: WD_REPEATS_1 WD_REPEATS_2 WD_REPEATS_REGION YP_001546022.1 PFAM: protein of unknown function DUF909 YP_001546024.1 PFAM: peptidase domain protein; KEGG: ter:Tery_1893 peptidase-like YP_001546025.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rrs:RoseRS_1555 enoyl-(acyl-carrier-protein)-like protein YP_001546026.1 PFAM: esterase; KEGG: lmo:lmo2433 similar to acetylesterase YP_001546027.1 PFAM: PRC-barrel domain protein; KEGG: dge:Dgeo_1677 PRC-barrel domain protein YP_001546028.1 KEGG: rrs:RoseRS_0559 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase subtype; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_001546030.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Carbohydrate-binding CenC domain protein; KEGG: sth:STH487 alkaline proteinase YP_001546031.1 PFAM: ABC-2 type transporter; KEGG: rca:Rcas_2356 ABC-2 type transporter YP_001546032.1 KEGG: rca:Rcas_4255 ferredoxin--NADP(+) reductase YP_001546033.1 PFAM: CBS domain containing protein; KEGG: rha:RHA1_ro00151 probable IMP dehydrogenase YP_001546034.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lpc:LPC_2172 nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase YP_001546035.1 KEGG: gvi:glr3419 hypothetical protein YP_001546036.1 KEGG: sit:TM1040_0097 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_001546037.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sus:Acid_0515 deoxyribose-phosphate aldolase YP_001546038.1 KEGG: mxa:MXAN_2109 hyalin repeat protein YP_001546039.1 KEGG: gsu:GSU0970 hypothetical protein YP_001546040.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001546041.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001546042.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001546043.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0092 anti-sigma-factor antagonist YP_001546045.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: msm:MSMEG_3180 transcriptional regulator, MerR family protein YP_001546046.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mag:amb1807 cation transport ATPase YP_001546047.1 PFAM: regulatory protein ArsR; transcriptional regulator TrmB; KEGG: ssp:SSP1604 transcriptional regulator YP_001546048.1 PFAM: Rhodanese domain protein; regulatory protein ArsR; KEGG: rxy:Rxyl_2941 transcriptional regulator, ArsR family YP_001546049.1 PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: nph:NP2670A homolog 4 to thiosulfate sulfurtransferase / hydrolase (probable hydroxyacylglutathione hydrolase) 2 YP_001546050.1 PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2943 major facilitator superfamily MFS_1 YP_001546051.1 PFAM: DSBA oxidoreductase; KEGG: stp:Strop_0173 DsbA oxidoreductase YP_001546052.1 PFAM: Disulphide bond formation protein DsbB; KEGG: rfr:Rfer_0415 disulphide bond formation protein DsbB YP_001546056.1 KEGG: sus:Acid_7587 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001546058.1 KEGG: ppd:Ppro_0716 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001546059.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_3594 glycosyl transferase, group 1 YP_001546061.1 PFAM: inositol monophosphatase; KEGG: rrs:RoseRS_3316 inositol monophosphatase YP_001546063.1 PFAM: SCP-like extracellular; KEGG: cya:CYA_0610 SCP family protein YP_001546064.1 PFAM: glycosyl transferase group 1; KEGG: ade:Adeh_4086 glycosyl transferase, group 1 YP_001546065.1 PFAM: pyruvate carboxyltransferase; KEGG: cne:CND01200 homocitrate synthase YP_001546066.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001546067.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001546068.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: rca:Rcas_3471 3-isopropylmalate dehydrogenase YP_001546069.1 TIGRFAM: lysine biosynthesis protein LysW; KEGG: rca:Rcas_3470 lysine biosynthesis protein LysW YP_001546070.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; lysine biosynthesis enzyme LysX; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: rrs:RoseRS_1059 lysine biosynthesis enzyme LysX YP_001546071.1 KEGG: rca:Rcas_3468 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001546072.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate and N-acetyl-L-aminoadipate to form N-acetyl-L-aminoadipate 5-phosphate in arginine and lysine biosynthesis YP_001546073.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: rca:Rcas_3460 acetylornithine and succinylornithine aminotransferase YP_001546074.1 catalyzes N(2)-acetyl-L-lysine + H(2)O = acetate + L-lysine YP_001546075.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001546076.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: bcy:Bcer98_3340 large conductance mechanosensitive channel protein YP_001546078.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_1595 GCN5-related N-acetyltransferase YP_001546079.1 KEGG: rrs:RoseRS_1263 hypothetical protein YP_001546080.1 PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_3119 peptidase C60, sortase A and B YP_001546082.1 KEGG: cel:K08H10.2 K08H10.2a YP_001546083.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: rca:Rcas_3413 PBS lyase heat domain protein repeat-containing protein YP_001546084.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rrs:RoseRS_0119 DNA repair protein RecN YP_001546085.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rrs:RoseRS_0120 hypothetical protein YP_001546086.1 PFAM: glycosyl transferase 4; KEGG: rca:Rcas_0017 glycosyl transferase 4 YP_001546087.1 PFAM: NUDIX hydrolase; MazG nucleotide pyrophosphohydrolase; KEGG: pth:PTH_2671 ADP-ribose pyrophosphatase YP_001546088.1 PFAM: Integrase catalytic region; KEGG: sma:SAV3741 ISmav2-like transposase YP_001546089.1 KEGG: pca:Pcar_0627 hypothetical protein YP_001546091.1 KEGG: mac:MA4365 conserved hypothetical protein YP_001546092.1 PFAM: NUDIX hydrolase; KEGG: btl:BALH_2416 MutT/NUDIX family protein YP_001546093.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001546094.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein ArsR; KEGG: rca:Rcas_2315 transcriptional regulator, ArsR family YP_001546095.1 KEGG: ava:Ava_3715 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001546096.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04654 permease of the major facilitator superfamily YP_001546098.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rrs:RoseRS_1506 cysteine synthase A YP_001546099.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: mbu:Mbur_1363 sodium/hydrogen exchanger YP_001546100.1 PFAM: TrkA-N domain protein; KEGG: rca:Rcas_0931 TrkA-N domain protein YP_001546103.1 KEGG: rrs:RoseRS_1607 hypothetical protein YP_001546104.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: gvi:gll0814 two-component sensor histidine kinase YP_001546105.1 PFAM: SEC-C motif domain protein; KEGG: rca:Rcas_3442 sec-C motif domain protein YP_001546106.1 PFAM: regulatory protein LuxR; Kelch repeat-containing protein; Kelch repeat protein; KEGG: rca:Rcas_0145 transcriptional regulator, LuxR family YP_001546107.1 PFAM: metallophosphoesterase; KEGG: rca:Rcas_1812 metallophosphoesterase YP_001546108.1 PFAM: PT repeat-containing protein; KEGG: rca:Rcas_1813 hypothetical protein YP_001546109.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: drm:Dred_1124 RNA binding S1 domain protein YP_001546110.1 PFAM: deoxyhypusine synthase; KEGG: rrs:RoseRS_1218 deoxyhypusine synthase YP_001546112.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_6374 medium-chain fatty acid--CoA ligase YP_001546113.1 KEGG: dge:Dgeo_1065 major facilitator superfamily MFS_1 YP_001546114.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kra:Krad_1283 ABC transporter-related protein YP_001546115.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: rrs:RoseRS_4051 biotin--acetyl-CoA-carboxylase ligase YP_001546116.1 KEGG: rrs:RoseRS_1105 hypothetical protein YP_001546117.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3942 glycosyl transferase group 1 YP_001546118.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3940 glycosyl transferase group 1 YP_001546119.1 PFAM: polysaccharide biosynthesis protein; KEGG: bfs:BF3463 LPS biosynthesis related polysaccharide transporter YP_001546120.1 PFAM: polysaccharide pyruvyl transferase; KEGG: mem:Memar_0956 polysaccharide pyruvyl transferase YP_001546121.1 PFAM: glycosyl transferase group 1; KEGG: tma:TM0622 lipopolysaccharide biosynthesis protein YP_001546123.1 KEGG: dvl:Dvul_3035 asparagine synthase (glutamine-hydrolyzing) YP_001546124.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pth:PTH_1074 hypothetical protein YP_001546125.1 KEGG: dre:799000 hypothetical protein LOC799000 YP_001546126.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001546127.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: atc:AGR_C_3767 hypothetical protein YP_001546128.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: sth:STH2754 class I aminotransferase YP_001546129.1 KEGG: bte:BTH_II1007 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001546131.1 PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase GAPDH domain protein; KEGG: rca:Rcas_1160 myo-inositol-1-phosphate synthase YP_001546132.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: tfu:Tfu_2102 lipid A biosynthesis lauroyl acyltransferase YP_001546133.1 PFAM: glycosyl transferase 2; KEGG: rca:Rcas_0014 glycosyl transferase 2 YP_001546134.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_3022 HAD-superfamily hydrolase, subfamily IIA YP_001546135.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001546136.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rca:Rcas_3715 NADP oxidoreductase coenzyme F420-dependent YP_001546137.1 PFAM: YhhN family protein; KEGG: rca:Rcas_2199 YhhN family protein YP_001546138.1 PFAM: beta-lactamase domain protein; KEGG: rrs:RoseRS_0588 beta-lactamase domain protein YP_001546139.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: gfo:GFO_1911 hypothetical protein YP_001546140.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mta:Moth_0082 MscS mechanosensitive ion channel YP_001546141.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001546142.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001546143.1 SMART: AAA ATPase; KEGG: rrs:RoseRS_4622 AAA ATPase YP_001546144.1 KEGG: rca:Rcas_4326 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_001546145.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001546146.1 KEGG: pth:PTH_0226 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001546147.1 KEGG: rrs:RoseRS_3713 hypothetical protein YP_001546148.1 KEGG: rrs:RoseRS_3991 hypothetical protein YP_001546149.1 KEGG: rrs:RoseRS_2668 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001546150.1 KEGG: rrs:RoseRS_2667 hypothetical protein YP_001546151.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2666 ABC transporter related YP_001546152.1 KEGG: rrs:RoseRS_2665 hypothetical protein YP_001546153.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters YP_001546154.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: gur:Gura_0008 multi-sensor signal transduction histidine kinase YP_001546155.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mta:Moth_0070 two component transcriptional regulator, winged helix family YP_001546158.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dra:DR_2242 thiol-specific antioxidant protein YP_001546160.1 KEGG: dge:Dgeo_2272 transposase, IS891/IS1136/IS1341; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_001546161.1 PFAM: transcription activator effector binding; KEGG: bba:Bd0811 transcriptional regulator, AraC family YP_001546162.1 PFAM: histone family protein DNA-binding protein; KEGG: par:Psyc_1474 DNA-binding protein HU-beta YP_001546163.1 SMART: Lipid transport protein domain; KEGG: mxa:MXAN_0589 hypothetical protein YP_001546164.1 PFAM: Phosphoglycerate mutase; KEGG: rrs:RoseRS_0008 phosphoglycerate mutase YP_001546165.1 KEGG: rrs:RoseRS_0007 hypothetical protein YP_001546166.1 KEGG: rrs:RoseRS_0006 hypothetical protein YP_001546167.1 PFAM: nitroreductase; KEGG: rxy:Rxyl_1083 nitroreductase YP_001546168.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_0373 anti-sigma-factor antagonist YP_001546169.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rca:Rcas_4173 acyl-CoA dehydrogenase domain protein YP_001546170.1 KEGG: sma:SAV984 hypothetical protein YP_001546171.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: sma:SAV985 hypothetical protein YP_001546172.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: sma:SAV986 hypothetical protein YP_001546173.1 KEGG: sma:SAV987 hypothetical protein YP_001546174.1 KEGG: stp:Strop_2016 hypothetical protein YP_001546175.1 KEGG: noc:Noc_0498 hypothetical protein YP_001546176.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rrs:RoseRS_3273 transglutaminase, N-terminal domain protein YP_001546177.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: stp:Strop_1782 ADP-ribosylation/crystallin J1 YP_001546178.1 PFAM: protein of unknown function DUF403; KEGG: rrs:RoseRS_3275 protein of unknown function DUF403 YP_001546179.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rca:Rcas_3761 protein of unknown function DUF404 YP_001546180.1 PFAM: protein of unknown function DUF147; KEGG: rca:Rcas_3986 protein of unknown function DUF147 YP_001546181.1 KEGG: rca:Rcas_3985 YbbR family protein YP_001546182.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; KEGG: pfl:PFL_0965 transcriptional regulator, LuxR family YP_001546183.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_C_1212 hypothetical protein YP_001546184.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rca:Rcas_0740 nucleotidyl transferase YP_001546185.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: rrs:RoseRS_1559 septum site-determining protein MinC YP_001546186.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rca:Rcas_3409 septum site-determining protein MinD YP_001546187.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_001546188.1 PFAM: protein of unknown function UPF0118; KEGG: rrs:RoseRS_1556 protein of unknown function UPF0118 YP_001546189.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dra:DR_0605 GGDEF family protein YP_001546190.1 KEGG: rca:Rcas_3401 hypothetical protein YP_001546191.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001546192.1 PFAM: protein of unknown function DUF461; KEGG: rca:Rcas_0963 protein of unknown function DUF461 YP_001546193.1 PFAM: electron transport protein SCO1/SenC; KEGG: rrs:RoseRS_2912 electron transport protein SCO1/SenC YP_001546195.1 PFAM: glycosyl transferase 9; KEGG: pca:Pcar_1263 ADP-heptose--LPS heptosyltransferase II YP_001546196.1 KEGG: rrs:RoseRS_1507 hypothetical protein YP_001546197.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1471 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001546199.1 KEGG: rca:Rcas_2067 hypothetical protein YP_001546200.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase; PFAM: shikimate kinase; KEGG: ana:alr3086 gluconokinase YP_001546201.1 PFAM: zinc finger SWIM domain protein; KEGG: hma:rrnAC1555 hypothetical protein YP_001546202.1 KEGG: cth:Cthe_1401 hypothetical protein YP_001546203.1 PFAM: sodium/hydrogen exchanger; KEGG: ctc:CTC01183 Na(+)/H(+) antiporter YP_001546205.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001546206.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_2566 anti-sigma-factor antagonist YP_001546207.1 catalyzes the hydrolysis of acylphosphate YP_001546208.1 PFAM: ThiJ/PfpI domain protein; KEGG: amt:Amet_1453 ThiJ/PfpI domain protein YP_001546209.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5647 ABC transporter integral membrane protein YP_001546210.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sat:SYN_01077 sensor proteinLuxQ YP_001546211.1 PFAM: protein of unknown function DUF218; KEGG: ter:Tery_2008 protein of unknown function DUF218 YP_001546212.1 PFAM: peptidase C2 calpain; KEGG: ana:all1084 unknown protein YP_001546214.1 PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rca:Rcas_3533 glycine cleavage T protein (aminomethyl transferase) YP_001546215.1 PFAM: DSBA oxidoreductase; KEGG: sth:STH161 hypothetical protein YP_001546216.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: rca:Rcas_1304 nuclease SbcCD, D subunit YP_001546217.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7109 oxidoreductase YP_001546218.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: fal:FRAAL5652 LysR-family transcriptional regulator YP_001546219.1 KEGG: nar:Saro_2191 hypothetical protein YP_001546221.1 KEGG: sen:SACE_7046 hypothetical protein YP_001546222.1 KEGG: rrs:RoseRS_4452 multi-sensor signal transduction histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein YP_001546223.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_2148 multi-sensor hybrid histidine kinase YP_001546224.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001546225.1 PFAM: cellulose-binding family II; Pectate lyase/Amb allergen; KEGG: cth:Cthe_2950 pectate lyase/Amb allergen YP_001546226.1 PFAM: cellulose-binding family II; FG-GAP repeat protein; KEGG: sco:SCO6542 secreted glycosyl hydrolase YP_001546227.1 PFAM: glycoside hydrolase 3 domain protein; KEGG: sus:Acid_6936 glycoside hydrolase, family 3 domain protein YP_001546228.1 PFAM: protein of unknown function UPF0153; KEGG: rba:RB252 hypothetical protein YP_001546229.1 PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3827 propionyl-CoA carboxylase YP_001546230.1 PFAM: band 7 protein; KEGG: rrs:RoseRS_3922 band 7 protein YP_001546231.1 PFAM: PfkB domain protein; KEGG: rca:Rcas_3222 PfkB domain protein YP_001546232.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rca:Rcas_3221 response regulator receiver modulated diguanylate cyclase YP_001546233.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_3925 tetratricopeptide TPR_2 repeat protein YP_001546234.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rxy:Rxyl_0375 acyl-CoA dehydrogenase-like protein YP_001546235.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gfo:GFO_3111 hypothetical protein YP_001546236.1 PFAM: protein kinase; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: rca:Rcas_0525 serine/threonine protein kinase with TPR repeats YP_001546238.1 TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: drm:Dred_1591 peptide deformylase YP_001546240.1 PFAM: cobalamin synthesis protein P47K; KEGG: mma:MM_1621 divalent cation transport protein YP_001546241.1 PFAM: regulatory protein LuxR; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_4327 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_001546242.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001546243.1 KEGG: mma:MM_1264 hypothetical protein YP_001546244.1 KEGG: psa:PST_0666 hypothetical protein YP_001546245.1 KEGG: nfa:nfa11310 hypothetical protein YP_001546246.1 PFAM: protein of unknown function UPF0126; KEGG: har:HEAR0704 hypothetical protein YP_001546247.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcy:Bcer98_3436 GCN5-related N-acetyltransferase YP_001546248.1 PFAM: leucine rich repeat variant; KEGG: mtp:Mthe_0150 leucine rich repeat variant YP_001546249.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_1479 serine/threonine protein kinase YP_001546250.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3659 protein kinase YP_001546251.1 PFAM: RimK domain protein ATP-grasp YP_001546252.1 KEGG: oih:OB0782 hypothetical protein YP_001546253.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mes:Meso_2325 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001546254.1 KEGG: rca:Rcas_2610 tetratricopeptide TPR_2 repeat protein YP_001546255.1 PFAM: GCN5-related N-acetyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_6031 methyltransferase type 11 YP_001546256.1 PFAM: pseudouridine synthase; KEGG: mxa:MXAN_5117 hypothetical protein YP_001546257.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: rca:Rcas_4345 chromosome segregation and condensation protein ScpA YP_001546258.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rrs:RoseRS_1722 Glu/Leu/Phe/Val dehydrogenase, C terminal YP_001546259.1 KEGG: rrs:RoseRS_2789 hypothetical protein YP_001546260.1 PFAM: extracellular solute-binding protein family 5; KEGG: rca:Rcas_0197 extracellular solute-binding protein family 5 YP_001546261.1 KEGG: rrs:RoseRS_0417 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001546262.1 KEGG: rca:Rcas_1061 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001546263.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rca:Rcas_1060 binding-protein-dependent transport systems inner membrane component YP_001546264.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rca:Rcas_1059 binding-protein-dependent transport systems inner membrane component YP_001546265.1 PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_0093 extracellular solute-binding protein, family 5 YP_001546266.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: rrs:RoseRS_3794 cell division protein FtsZ YP_001546267.1 PFAM: cell division protein FtsA; KEGG: rrs:RoseRS_3793 cell division protein FtsA YP_001546268.1 PFAM: protein of unknown function DUF1290; KEGG: pth:PTH_1852 hypothetical protein YP_001546269.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: rrs:RoseRS_3792 polypeptide-transport-associated domain protein, FtsQ-type YP_001546270.1 KEGG: rrs:RoseRS_3791 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase domain protein YP_001546271.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001546272.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_3789 tetratricopeptide TPR_2 repeat protein YP_001546273.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rca:Rcas_1093 UDP-N-acetylmuramate--alanine ligase YP_001546275.1 PFAM: Glycosyltransferase 28 domain; KEGG: rrs:RoseRS_3786 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_001546276.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rrs:RoseRS_3785 cell division protein FtsW YP_001546277.1 PFAM: Rhomboid family protein; KEGG: rrs:RoseRS_3784 rhomboid family protein YP_001546278.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rrs:RoseRS_3783 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_001546279.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001546280.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rca:Rcas_1100 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_001546281.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rrs:RoseRS_3780 peptidoglycan glycosyltransferase YP_001546282.1 KEGG: rca:Rcas_1102 hypothetical protein YP_001546283.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rrs:RoseRS_3778 S-adenosyl-methyltransferase MraW YP_001546284.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: rca:Rcas_1104 MraZ protein YP_001546285.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:blr2985 two-component hybrid sensor and regulator YP_001546286.1 KEGG: rrs:RoseRS_2830 hypothetical protein YP_001546287.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: rca:Rcas_1587 intradiol ring-cleavage dioxygenase YP_001546288.1 PFAM: Domain of unknown function DUF1801; KEGG: rba:RB5211 hypothetical protein YP_001546291.1 KEGG: rca:Rcas_1372 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001546292.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001546293.1 KEGG: rrs:RoseRS_1149 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: Hedgehog/intein hint domain protein YP_001546294.1 KEGG: chu:CHU_3673 hypothetical protein YP_001546296.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001546297.1 PFAM: AAA-4 family protein; KEGG: rrs:RoseRS_2125 transcriptional regulator YP_001546298.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: gme:Gmet_1688 hypothetical protein YP_001546299.1 KEGG: har:HEAR1100 hypothetical protein YP_001546301.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: rrs:RoseRS_3199 acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_001546302.1 KEGG: rca:Rcas_1151 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit YP_001546303.1 TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: rca:Rcas_0981 hydroxymethylglutaryl-CoA reductase, degradative YP_001546304.1 KEGG: rca:Rcas_0340 hypothetical protein YP_001546305.1 KEGG: rca:Rcas_0340 hypothetical protein YP_001546306.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rrs:RoseRS_0664 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001546307.1 TIGRFAM: DNA binding domain, excisionase; PFAM: regulatory protein MerR; KEGG: rca:Rcas_2025 DNA binding domain, excisionase YP_001546308.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001546309.1 PFAM: Chlorite dismutase; KEGG: rrs:RoseRS_1747 chlorite dismutase YP_001546310.1 KEGG: chy:CHY_0483 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_001546311.1 PFAM: ferrochelatase; KEGG: rrs:RoseRS_1749 ferrochelatase YP_001546312.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001546313.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: ppd:Ppro_3374 uroporphyrin-III C-methyltransferase YP_001546314.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001546315.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001546318.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rrs:RoseRS_0656 endonuclease/exonuclease/phosphatase YP_001546321.1 KEGG: rrs:RoseRS_3306 hypothetical protein YP_001546325.1 KEGG: sen:SACE_5483 hypothetical protein YP_001546327.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: stp:Strop_1793 prolyl-tRNA synthetase YP_001546328.1 KEGG: rrs:RoseRS_0390 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_001546329.1 PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pnu:Pnuc_0670 cyanophycin synthetase YP_001546330.1 KEGG: noc:Noc_2887 hypothetical protein YP_001546331.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rrs:RoseRS_0319 acyl-CoA dehydrogenase domain protein YP_001546332.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001546333.1 PFAM: RNA methylase; Methyltransferase type 11; KEGG: rrs:RoseRS_2801 RNA methylase YP_001546334.1 PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rrs:RoseRS_2145 metal dependent phosphohydrolase YP_001546335.1 PFAM: protein of unknown function DUF512; KEGG: rca:Rcas_3528 protein of unknown function DUF512 YP_001546336.1 PFAM: protein of unknown function UPF0044; KEGG: mgm:Mmc1_3700 protein of unknown function UPF0044 YP_001546337.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rca:Rcas_3955 signal transduction histidine kinase YP_001546338.1 KEGG: rrs:RoseRS_2369 diguanylate cyclase YP_001546339.1 PFAM: sugar transferase; KEGG: rca:Rcas_3108 undecaprenyl-phosphate galactose phosphotransferase YP_001546340.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2371 glycosyl transferase, group 1 YP_001546341.1 PFAM: glycosyl transferase group 1; KEGG: ade:Adeh_4086 glycosyl transferase, group 1 YP_001546342.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; lipopolysaccharide biosynthesis protein; KEGG: rrs:RoseRS_2374 lipopolysaccharide biosynthesis protein YP_001546343.1 PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_2375 O-antigen polymerase YP_001546344.1 PFAM: polysaccharide biosynthesis protein; KEGG: rca:Rcas_3101 polysaccharide biosynthesis protein YP_001546345.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2379 glycosyl transferase, group 1 YP_001546346.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2380 glycosyl transferase, group 1 YP_001546347.1 PFAM: glycosyl transferase 2; KEGG: rrs:RoseRS_2373 glycosyl transferase, family 2 YP_001546348.1 KEGG: rrs:RoseRS_4439 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase YP_001546349.1 KEGG: rrs:RoseRS_3820 hypothetical protein YP_001546350.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: mgm:Mmc1_2685 adenylate/guanylate cyclase YP_001546351.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pat:Patl_3544 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001546352.1 PFAM: metallophosphoesterase; KEGG: rca:Rcas_0288 metallophosphoesterase YP_001546353.1 KEGG: kra:Krad_3715 hypothetical protein YP_001546354.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: rrs:RoseRS_4359 aldehyde ferredoxin oxidoreductase YP_001546355.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: nph:NP2480A mandelate racemase homolog / muconate lactonizing enzyme homolog YP_001546356.1 PFAM: NLP/P60 protein; KEGG: rba:RB11119 pipeptidyl-peptidase VI YP_001546358.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_2353 ABC transporter related YP_001546359.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: rca:Rcas_2354 ribosome small subunit-dependent GTPase A YP_001546360.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0187 ATPase AAA-2 domain protein YP_001546361.1 PFAM: SH3 type 3 domain protein; KEGG: rca:Rcas_1153 SH3 type 3 domain protein YP_001546362.1 PFAM: Phosphoglycerate mutase; KEGG: rrs:RoseRS_1599 phosphoglycerate mutase YP_001546363.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rca:Rcas_2216 peptidylprolyl isomerase YP_001546364.1 PFAM: carbonic anhydrase; KEGG: msm:MSMEG_6082 carbonic anhydrase YP_001546365.1 PFAM: carbonic anhydrase; KEGG: pst:PSPTO_1340 carbonic anhydrase YP_001546366.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: mxa:MXAN_3278 hydrolase, alpha/beta fold family YP_001546367.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: csc:Csac_1046 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_001546368.1 KEGG: rrs:RoseRS_4486 hypothetical protein YP_001546369.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro03350 probable hydrolase YP_001546370.1 PFAM: AzlC family protein; KEGG: reu:Reut_A0495 AzlC-like YP_001546371.1 PFAM: branched-chain amino acid transport; KEGG: pla:Plav_1961 branched-chain amino acid transport YP_001546373.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; KEGG: rrs:RoseRS_1935 anti-sigma-factor antagonist YP_001546374.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001546375.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: rrs:RoseRS_2186 transcriptional acitvator, Baf family YP_001546376.1 PFAM: NERD domain protein; KEGG: rca:Rcas_3862 NERD domain protein YP_001546377.1 KEGG: dde:Dde_2725 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase YP_001546378.1 PFAM: Mur ligase middle domain protein; domain of unknown function DUF1727; KEGG: rrs:RoseRS_0500 domain of unknown function DUF1727 YP_001546379.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rle:RL3719 hypothetical protein YP_001546380.1 KEGG: rca:Rcas_0050 hypothetical protein YP_001546381.1 KEGG: dar:Daro_2533 hypothetical protein YP_001546382.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_1500 GCN5-related N-acetyltransferase YP_001546383.1 PFAM: acyltransferase 3; KEGG: mpt:Mpe_A0727 acyltransferase-like protein YP_001546385.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sth:STH1254 hypothetical protein YP_001546386.1 PFAM: glycosyl transferase 39; KEGG: mta:Moth_2358 glycosyl transferase, family 39 YP_001546387.1 PFAM: GtrA family protein; KEGG: gtn:GTNG_1934 hypothetical protein YP_001546388.1 PFAM: glycosyl transferase 2; KEGG: pth:PTH_1466 glycosyltransferases YP_001546390.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2719 ABC transporter related YP_001546391.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2717 ABC transporter related YP_001546392.1 KEGG: dge:Dgeo_0557 hypothetical protein YP_001546393.1 KEGG: cdf:CD2228 hypothetical protein YP_001546394.1 KEGG: rca:Rcas_2727 glycosyl transferase 39 YP_001546395.1 PFAM: TM1410 hypothetical-related protein; KEGG: nmu:Nmul_A2438 hypothetical protein YP_001546396.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions YP_001546397.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: rca:Rcas_3713 Holliday junction resolvase YqgF YP_001546398.1 KEGG: rrs:RoseRS_3224 hypothetical protein YP_001546399.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001546400.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pho:PH0694 hypothetical protein YP_001546402.1 PFAM: Glycoside hydrolase 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: dge:Dgeo_2829 beta-galactosidase YP_001546403.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV7265 L-arabinose transport system permease YP_001546404.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV7264 L-arabinose transport system permease YP_001546405.1 PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr6435 ABC transporter sugar binding protein YP_001546408.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: gvi:glr0075 sugar-non-specific nuclease NucA homolog YP_001546409.1 PFAM: peptidase M4 thermolysin; Propeptide peptidase M4 and M36; Peptidase M4 thermolysin; KEGG: bce:BC0602 bacillolysin YP_001546410.1 PFAM: ComEC/Rec2-related protein; KEGG: rrs:RoseRS_1609 ComEC/Rec2-related protein YP_001546411.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: sen:SACE_4576 cupin 2, conserved barrel YP_001546412.1 PFAM: NLP/P60 protein; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: rrs:RoseRS_4127 NLP/P60 protein YP_001546413.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0221 anti-sigma-factor antagonist YP_001546415.1 PFAM: UvrD/REP helicase; KEGG: rca:Rcas_3376 UvrD/REP helicase YP_001546416.1 PFAM: protein of unknown function DUF62; KEGG: rca:Rcas_1378 protein of unknown function DUF62 YP_001546417.1 KEGG: sus:Acid_1474 hypothetical protein YP_001546418.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rxy:Rxyl_2809 two component transcriptional regulator, LuxR family YP_001546423.1 KEGG: bra:BRADO1817 multiple sugar-binding periplasmic receptor ChvE precursor YP_001546424.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll5657 sugar ABC transporter (ATP-binding protein) YP_001546425.1 PFAM: inner-membrane translocator; KEGG: bld:BLi00444 ABC transporter (permease); RBL00402 YP_001546426.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_001546427.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate YP_001546428.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_001546429.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_0219 transcriptional regulator, LacI family YP_001546431.1 KEGG: rrs:RoseRS_3972 hypothetical protein YP_001546432.1 PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rrs:RoseRS_1374 GHMP kinase YP_001546433.1 KEGG: rrs:RoseRS_0166 hypothetical protein YP_001546434.1 PFAM: aminotransferase class I and II; KEGG: mxa:MXAN_0531 aminotransferase, class I YP_001546435.1 PFAM: Phosphoglycerate mutase; KEGG: rca:Rcas_0171 phosphoglycerate mutase YP_001546436.1 KEGG: gvi:gll3079 unknown protein YP_001546437.1 KEGG: ava:Ava_1412 hypothetical protein YP_001546438.1 PFAM: metallophosphoesterase; KEGG: bca:BCE_3460 phosphoesterase, subfamily YP_001546441.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: drm:Dred_1353 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001546442.1 PFAM: chaperonin Cpn10; KEGG: rca:Rcas_1212 chaperonin Cpn10 YP_001546443.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: rrs:RoseRS_4131 chaperonin GroEL YP_001546444.1 PFAM: Semialdehyde dehydrogenase NAD - binding; dihydrodipicolinate reductase; KEGG: rme:Rmet_3210 dihydrodipicolinate reductase YP_001546445.1 PFAM: transcriptional activator domain; Helix-turn-helix type 11 domain protein; KEGG: pol:Bpro_1406 transcriptional activator domain YP_001546446.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dps:DP2620 related to Sec-independent protein translocase TatE YP_001546447.1 PFAM: hypothetical protein; transcriptional activator domain; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_4424 transcriptional activator domain YP_001546448.1 KEGG: fps:FP1584 hypothetical protein YP_001546449.1 KEGG: rca:Rcas_0529 hypothetical protein YP_001546450.1 KEGG: rca:Rcas_2145 hypothetical protein YP_001546451.1 PFAM: peptidase M23B; KEGG: rca:Rcas_2144 peptidase M23B YP_001546452.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_0621 anti-sigma-factor antagonist YP_001546453.1 PFAM: cyclic nucleotide-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rrs:RoseRS_3166 cyclic nucleotide-binding protein YP_001546454.1 PFAM: esterase; KEGG: rca:Rcas_0524 esterase YP_001546455.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rrs:RoseRS_4322 flavin reductase domain protein, FMN-binding YP_001546456.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: gsu:GSU3129 MATE efflux family protein YP_001546458.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rrs:RoseRS_1980 ATP--cobalamin adenosyltransferase YP_001546460.1 PFAM: cytochrome P450; KEGG: art:Arth_1978 cytochrome P450 YP_001546462.1 KEGG: hsa:140453 mucin 17, cell surface associated YP_001546463.1 KEGG: det:DET0601 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_001546464.1 KEGG: rca:Rcas_0248 uracil-DNA glycosylase superfamily YP_001546465.1 PFAM: protein of unknown function Met10; SMART: PUA domain containing protein; KEGG: rrs:RoseRS_0887 PUA domain containing protein YP_001546466.1 KEGG: rrs:RoseRS_0886 arginine biosynthesis bifunctional protein ArgJ YP_001546467.1 PFAM: peptidase S16 lon domain protein; KEGG: rrs:RoseRS_0885 peptidase S16, lon domain protein YP_001546468.1 PFAM: protein of unknown function DUF503; KEGG: rrs:RoseRS_0884 protein of unknown function DUF503 YP_001546469.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: asa:ASA_0164 maltodextrin glucosidase YP_001546470.1 PFAM: beta-lactamase domain protein; KEGG: rrs:RoseRS_2738 beta-lactamase domain protein YP_001546471.1 TIGRFAM: polymorphic outer membrane protein; KEGG: rrs:RoseRS_2393 polymorphic outer membrane protein YP_001546472.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: rca:Rcas_4304 protoheme IX farnesyltransferase YP_001546473.1 KEGG: pth:PTH_1077 hypothetical protein YP_001546474.1 KEGG: rba:RB4577 asparagine synthetase [glutamine-hydrolyzing] 1; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase YP_001546475.1 PFAM: glycosyl transferase group 1; KEGG: dar:Daro_1274 glycosyl transferase, group 1 YP_001546476.1 KEGG: par:Psyc_0666 hypothetical protein YP_001546477.1 PFAM: RNA binding S1 domain protein; KEGG: rrs:RoseRS_4287 RNA binding S1 domain protein YP_001546479.1 PFAM: FG-GAP repeat protein; KEGG: sfu:Sfum_3677 FG-GAP repeat protein YP_001546480.1 KEGG: gme:Gmet_3488 K+ channel, pore region YP_001546481.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rrs:RoseRS_3819 galactokinase YP_001546482.1 TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mxa:MXAN_2041 cystathionine beta-synthase YP_001546483.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: lbl:LBL_1095 methylase/methyltransferase YP_001546484.1 SMART: serine/threonine protein kinase; KEGG: rca:Rcas_1869 serine/threonine protein kinase YP_001546486.1 KEGG: rca:Rcas_2214 DNA replication and repair protein RecF; TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; SMART: AAA ATPase YP_001546487.1 KEGG: lsa:LSA1706 beta-lactamase (class A) precursor YP_001546488.1 KEGG: mca:MCA2764 lipoprotein YP_001546489.1 PFAM: protein of unknown function DUF152; KEGG: sth:STH1225 conserved hypothetical protein YP_001546490.1 KEGG: chu:CHU_3113 membrane protein YP_001546493.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bba:Bd3149 long-chain fatty-acid-CoA ligase YP_001546494.1 PFAM: MOSC domain containing protein; KEGG: gka:GK1632 hypothetical protein YP_001546495.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_0922 acetyltransferase, GNAT family YP_001546499.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_4579 glycosyl transferase, group 1 YP_001546500.1 KEGG: rrs:RoseRS_4471 hypothetical protein YP_001546501.1 KEGG: gvi:glr2443 L-sorbosone dehydrogenase YP_001546502.1 KEGG: ava:Ava_B0238 lanthionine synthetase C-like YP_001546503.1 PFAM: helix-turn-helix domain protein; hypothetical protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001546505.1 PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: mxa:MXAN_2853 lantibiotic ABC transporter, permease/ATP-binding protein YP_001546506.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_3655 NAD-dependent epimerase/dehydratase YP_001546507.1 PFAM: mannose-6-phosphate isomerase type I; KEGG: rrs:RoseRS_3802 mannose-6-phosphate isomerase YP_001546508.1 KEGG: rca:Rcas_0937 peptidase C60 sortase A and B YP_001546509.1 PFAM: cyclic nucleotide-binding; KEGG: rrs:RoseRS_1786 cyclic nucleotide-binding protein YP_001546510.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sma:SAV2618 ABC transporter ATP-binding protein YP_001546511.1 TIGRFAM: conserved repeat domain; KEGG: rrs:RoseRS_3680 conserved repeat domain YP_001546512.1 KEGG: rrs:RoseRS_1898 hypothetical protein YP_001546513.1 KEGG: jan:Jann_1655 expressed protein YP_001546514.1 TIGRFAM: Acetyl coenzyme A synthetase (ADP forming) alpha domain; PFAM: CoA-binding domain protein; KEGG: rrs:RoseRS_4534 CoA-binding domain protein YP_001546515.1 PFAM: DRTGG domain protein; KEGG: rca:Rcas_0075 DRTGG domain protein YP_001546516.1 KEGG: rca:Rcas_3121 hypothetical protein YP_001546517.1 KEGG: mms:mma_1622 hypothetical protein YP_001546518.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rru:Rru_A3358 methylated-DNA--(protein)-cysteine S-methyltransferase YP_001546519.1 PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; KEGG: afw:Anae109_3550 AlkA domain protein YP_001546520.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001546521.1 KEGG: drm:Dred_1641 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001546522.1 KEGG: cte:CT1819 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_001546523.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: drm:Dred_1639 cytochrome bd ubiquinol oxidase, subunit I YP_001546524.1 KEGG: rca:Rcas_3122 hypothetical protein YP_001546525.1 PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pau:PA14_15080 iron-regulated membrane protein YP_001546526.1 KEGG: dra:DR_0560 hypothetical protein YP_001546527.1 PFAM: cytochrome c class I; KEGG: rca:Rcas_1188 hypothetical protein YP_001546529.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1463 protein-S-isoprenylcysteine methyltransferase-like YP_001546531.1 PFAM: beta-lactamase domain protein; KEGG: bat:BAS2235 metallo-beta-lactamase YP_001546532.1 PFAM: Ankyrin; KEGG: tpe:Tpen_1284 ankyrin YP_001546533.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; KEGG: rca:Rcas_3277 phosphoribosylformylglycinamidine synthase I YP_001546534.1 KEGG: rca:Rcas_1797 hypothetical protein YP_001546535.1 KEGG: rrs:RoseRS_2621 hypothetical protein YP_001546536.1 KEGG: rca:Rcas_1795 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_001546537.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: rrs:RoseRS_3458 RNA methyltransferase, TrmH family, group 3 YP_001546538.1 KEGG: ana:all0703 hypothetical protein YP_001546539.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rca:Rcas_3064 GAF sensor signal transduction histidine kinase YP_001546540.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: cvi:CV_4157 hypothetical protein YP_001546541.1 KEGG: btk:BT9727_4273 hypothetical protein YP_001546542.1 PFAM: Phosphoglycerate mutase; KEGG: hch:HCH_03079 fructose-2,6-bisphosphatase YP_001546545.1 KEGG: asa:ASA_3294 hypothetical protein YP_001546546.1 PFAM: aminotransferase class V; KEGG: sus:Acid_2875 aminotransferase, class V YP_001546547.1 KEGG: sth:STH2637 succinate dehydrogenase membrane subunit YP_001546548.1 KEGG: sth:STH2638 succinate dehydrogenase membrane subunit YP_001546549.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sfu:Sfum_2104 succinate dehydrogenase, flavoprotein subunit YP_001546550.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: ttj:TTHA1453 succinate dehydrogenase, iron-sulfur subunit YP_001546551.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rrs:RoseRS_4629 transcriptional regulator YP_001546552.1 PFAM: aldehyde dehydrogenase; KEGG: rrs:RoseRS_0265 aldehyde dehydrogenase (NAD(+)) YP_001546553.1 PFAM: protein of unknown function DUF1697; KEGG: lic:LIC10638 hypothetical protein YP_001546555.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: csc:Csac_2477 ammonium transporter YP_001546556.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: syx:SynWH7803_1056 peptide methionine sulfoxide reductase YP_001546557.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mgi:Mflv_2894 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001546558.1 PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_0313 aldehyde dehydrogenase YP_001546559.1 PFAM: Ferritin Dps family protein; KEGG: rca:Rcas_3287 ferroxidase YP_001546561.1 PFAM: MaoC domain protein dehydratase; KEGG: cbe:Cbei_4279 MaoC domain protein dehydratase YP_001546562.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sth:STH798 long-chain fatty-acid-CoA ligase YP_001546563.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: bcz:BCZK1748 3-oxoacyl-(acyl carrier protein) synthase YP_001546564.1 PFAM: inner-membrane translocator; KEGG: sth:STH2196 branched-chain amino acid ABC transporter permease YP_001546565.1 PFAM: alpha/beta hydrolase fold; KEGG: sth:STH2847 hypothetical protein YP_001546566.1 PFAM: inner-membrane translocator; KEGG: sth:STH2195 branched-chain amino acid ABC transporter permease YP_001546567.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_4106 ABC transporter related YP_001546568.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_4105 ABC transporter related YP_001546569.1 KEGG: rrs:RoseRS_4104 extracellular ligand-binding receptor YP_001546570.1 PFAM: transcriptional activator domain; KEGG: rrs:RoseRS_4345 transcriptional activator domain YP_001546571.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rrs:RoseRS_3235 SNO glutamine amidotransferase YP_001546572.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_001546573.1 KEGG: afu:AF1398 hypothetical protein YP_001546574.1 KEGG: rca:Rcas_0423 integrin alpha beta-propellor repeat protein YP_001546575.1 PFAM: cobalt transport protein; KEGG: stp:Strop_4399 cobalt transport protein YP_001546576.1 PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: rca:Rcas_3957 peptidase S41 YP_001546577.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: amt:Amet_0148 peptidase T-like protein YP_001546578.1 PFAM: penicillin-binding protein transpeptidase; KEGG: rca:Rcas_3956 peptidoglycan glycosyltransferase YP_001546579.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rca:Rcas_0680 thioredoxin reductase YP_001546580.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: mxa:MXAN_6138 RibD domain protein YP_001546581.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: fjo:Fjoh_0861 protein of unknown function DUF6, transmembrane YP_001546582.1 KEGG: rrs:RoseRS_3206 hypothetical protein YP_001546583.1 KEGG: sfu:Sfum_3125 hypothetical protein YP_001546584.1 KEGG: bch:Bcen2424_1858 hypothetical protein YP_001546585.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rca:Rcas_3056 methyltransferase type 11 YP_001546586.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_2423 methyltransferase type 11 YP_001546587.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ccr:CC_1187 spoU rRNA methylase YP_001546588.1 KEGG: rrs:RoseRS_2786 hypothetical protein YP_001546589.1 KEGG: rrs:RoseRS_2959 hypothetical protein YP_001546590.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2958 glycosyl transferase, group 1 YP_001546591.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dsy:DSY3346 hypothetical protein YP_001546592.1 PFAM: peptidase S14 ClpP; KEGG: rrs:RoseRS_3662 endopeptidase Clp YP_001546593.1 binds and unfolds substrates as part of the ClpXP protease YP_001546594.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_4028 short-chain dehydrogenase/reductase SDR YP_001546595.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001546596.1 PFAM: protein of unknown function DUF554; KEGG: ttj:TTHA0877 hypothetical protein YP_001546597.1 PFAM: regulatory protein MerR; transcription activator effector binding; KEGG: dra:DR_2448 transcriptional regulator, MerR family YP_001546598.1 KEGG: rxy:Rxyl_2190 hypothetical protein YP_001546599.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: rrs:RoseRS_3187 histidyl-tRNA synthetase YP_001546600.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001546601.1 KEGG: rca:Rcas_1439 hypothetical protein YP_001546602.1 PFAM: regulatory protein ArsR; KEGG: rha:RHA1_ro04775 hypothetical protein YP_001546603.1 KEGG: rha:RHA1_ro04776 hypothetical protein YP_001546605.1 KEGG: rrs:RoseRS_2802 hypothetical protein YP_001546606.1 PFAM: protein of unknown function YGGT; KEGG: rca:Rcas_2905 protein of unknown function YGGT YP_001546607.1 KEGG: rrs:RoseRS_3177 spermidine synthase-like protein YP_001546609.1 KEGG: mes:Meso_3676 conserved hypothetical protein 95 YP_001546610.1 PFAM: Phosphoglycerate mutase; KEGG: swi:Swit_5116 phosphoglycerate mutase YP_001546611.1 PFAM: aromatic amino acid hydroxylase; KEGG: sru:SRU_2069 tryptophan 5-hydroxylase 1 YP_001546612.1 PFAM: hypothetical protein; NB-ARC domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fal:FRAAL2534 regulatory protein (AfsR-like protein) YP_001546613.1 KEGG: rrs:RoseRS_4060 hypothetical protein YP_001546615.1 PFAM: protein of unknown function DUF909; KEGG: ypk:y2686 hypothetical protein YP_001546616.1 KEGG: mxa:MXAN_2254 hypothetical protein YP_001546617.1 PFAM: aminoglycoside phosphotransferase; KEGG: lpc:LPC_0910 spectinomycin phosphotransferase YP_001546618.1 KEGG: rrs:RoseRS_2786 hypothetical protein YP_001546619.1 KEGG: rrs:RoseRS_0091 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001546620.1 KEGG: bpd:BURPS668_A0166 rhs element Vgr protein YP_001546621.1 KEGG: rrs:RoseRS_0098 hypothetical protein YP_001546622.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_3810 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001546624.1 PFAM: CsbD family protein; KEGG: ncr:NCU09057.1 hypothetical protein YP_001546626.1 KEGG: rrs:RoseRS_0376 hypothetical protein YP_001546627.1 PFAM: NHL repeat containing protein; KEGG: rca:Rcas_0293 NHL repeat containing protein YP_001546628.1 KEGG: rca:Rcas_0292 glycosyl transferase 39 YP_001546629.1 PFAM: aldehyde dehydrogenase; KEGG: rca:Rcas_1222 aldehyde dehydrogenase YP_001546630.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rrs:RoseRS_0138 alpha amylase, catalytic region YP_001546631.1 TIGRFAM: hydroxymethylglutaryl-CoA synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: rca:Rcas_0982 hydroxymethylglutaryl-CoA synthase YP_001546632.1 KEGG: rrs:RoseRS_0429 acetyl-CoA acetyltransferase-like protein YP_001546633.1 PFAM: protein of unknown function DUF35; KEGG: rrs:RoseRS_0428 protein of unknown function DUF35 YP_001546634.1 KEGG: reu:Reut_A1128 transferase hexapeptide repeat YP_001546635.1 PFAM: sugar transferase; KEGG: kra:Krad_1048 undecaprenyl-phosphate galactose phosphotransferase YP_001546636.1 KEGG: rca:Rcas_1825 cyclase/dehydrase YP_001546639.1 PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: cbu:CBU_0390 integral membrane protein MviN YP_001546640.1 KEGG: ajs:Ajs_3587 hypothetical protein YP_001546641.1 KEGG: rca:Rcas_1570 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001546642.1 KEGG: rrs:RoseRS_0949 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 2 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001546643.1 PFAM: ribosomal protein S15; KEGG: rca:Rcas_3587 ribosomal protein S15 YP_001546644.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pst:PSPTO_1367 acetyltransferase, GNAT family YP_001546645.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; Ketopantoate reductase ApbA/PanE domain protein; KEGG: dsy:DSY2249 hypothetical protein YP_001546646.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rrs:RoseRS_0168 aminotransferase, class V YP_001546647.1 PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: rrs:RoseRS_3661 trigger factor YP_001546649.1 KEGG: cth:Cthe_0050 hypothetical protein YP_001546653.1 KEGG: mva:Mvan_1901 transcriptional regulator, TetR family YP_001546654.1 PFAM: glycoside hydrolase clan GH-D; KEGG: aba:Acid345_1677 alpha-galactosidase YP_001546655.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001546656.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV1200 dehydrogenase YP_001546657.1 PFAM: helix-turn-helix HxlR type; KEGG: bld:BLi00812 YdeP YP_001546658.1 PFAM: periplasmic binding protein; KEGG: rrs:RoseRS_3091 periplasmic binding protein YP_001546660.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_0506 glycosyl transferase, group 1 YP_001546661.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: rca:Rcas_0203 NAD-dependent epimerase/dehydratase YP_001546662.1 PFAM: glycosyl transferase 2; KEGG: rrs:RoseRS_3870 glycosyl transferase, family 2 YP_001546663.1 PFAM: Transglycosylase-associated protein; KEGG: xom:XOO_4288 transglycosylase associated protein YP_001546664.1 PFAM: Transglycosylase-associated protein; KEGG: xom:XOO_4288 transglycosylase associated protein YP_001546666.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rrs:RoseRS_4133 aminotransferase, class I and II YP_001546667.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rca:Rcas_2212 alcohol dehydrogenase zinc-binding domain protein YP_001546668.1 KEGG: rrs:RoseRS_2220 hypothetical protein YP_001546669.1 KEGG: rca:Rcas_3368 hypothetical protein YP_001546670.1 KEGG: rrs:RoseRS_2218 hypothetical protein YP_001546671.1 KEGG: ana:alr3524 hypothetical protein YP_001546672.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sru:SRU_1122 FixL-related histidine kinase YP_001546673.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sfu:Sfum_0092 chromate transporter, chromate ion transporter (CHR) family YP_001546674.1 PFAM: protein of unknown function DUF909 YP_001546677.1 PFAM: Rhodanese domain protein; KEGG: ana:all0384 hypothetical protein YP_001546678.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: mxa:MXAN_7254 hypothetical protein YP_001546680.1 PFAM: LmbE family protein; KEGG: rca:Rcas_1525 LmbE family protein YP_001546681.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pth:PTH_0066 predicted methyltransferase YP_001546682.1 KEGG: rca:Rcas_2646 hypothetical protein YP_001546683.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: ava:Ava_3408 ribonuclease BN YP_001546684.1 KEGG: rca:Rcas_2293 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001546685.1 PFAM: conserved hypothetical protein; KEGG: gka:GK0018 hypothetical protein YP_001546686.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001546687.1 PFAM: Roadblock/LC7 family protein; KEGG: afw:Anae109_0692 hypothetical protein YP_001546688.1 PFAM: von Willebrand factor type A; KEGG: rca:Rcas_1363 von Willebrand factor type A YP_001546689.1 KEGG: rca:Rcas_0225 hypothetical protein YP_001546690.1 PFAM: ApbE family lipoprotein; KEGG: rrs:RoseRS_0609 ApbE family lipoprotein YP_001546691.1 KEGG: aau:AAur_1561 translation initiation factor IF-2 YP_001546692.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: rca:Rcas_0228 propeptide PepSY amd peptidase M4 YP_001546694.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_0229 two component transcriptional regulator, winged helix family YP_001546695.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_0230 integral membrane sensor signal transduction histidine kinase YP_001546696.1 PFAM: phosphatidate cytidylyltransferase; KEGG: rca:Rcas_3930 phosphatidate cytidylyltransferase YP_001546697.1 PFAM: DinB family protein YP_001546698.1 PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_2506 major facilitator superfamily MFS_1 YP_001546699.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0412 multi-sensor signal transduction histidine kinase YP_001546700.1 PFAM: ROK family protein; KEGG: asa:ASA_3376 ROK family protein YP_001546701.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001546702.1 KEGG: rca:Rcas_1252 hypothetical protein YP_001546703.1 KEGG: rrs:RoseRS_1271 kelch repeat-containing protein YP_001546704.1 SMART: von Willebrand factor type A; KEGG: rca:Rcas_1686 von Willebrand factor type A YP_001546705.1 PFAM: TadE family protein; KEGG: rrs:RoseRS_1268 PA14 domain protein YP_001546706.1 PFAM: TadE family protein; KEGG: rrs:RoseRS_1267 TadE family protein YP_001546707.1 KEGG: rca:Rcas_1689 hypothetical protein YP_001546708.1 PFAM: protein kinase; Thrombospondin type 3 repeat; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_2288 serine/threonine protein kinase YP_001546709.1 PFAM: protein of unknown function RIO1; protein kinase; Thrombospondin type 3 repeat; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1529 protein kinase YP_001546710.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: cyb:CYB_1089 glucosamine--fructose-6-phosphate aminotransferase, isomerizing YP_001546711.1 PFAM: TnsA endonuclease; KEGG: bca:BCE_0182 Tn7-like transposition protein A YP_001546712.1 KEGG: cth:Cthe_1115 Tn7-like transposition protein C YP_001546713.1 KEGG: cth:Cthe_1114 Tn7-like transposition protein D YP_001546714.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: cac:CAC0039 DNA segregation ATPase FtsK/SpoIIIE family protein, contains FHA domain YP_001546715.1 PFAM: helix-turn-helix domain protein; KEGG: eca:ECA0964 regulatory protein YP_001546716.1 KEGG: bca:BCE_0178 Tn7-like transposition protein D YP_001546717.1 PFAM: protein of unknown function DUF98; KEGG: gvi:glr0944 hypothetical protein YP_001546718.1 PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: hch:HCH_06164 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II YP_001546719.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_4526 polyketide synthase type I YP_001546720.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_4526 polyketide synthase type I YP_001546721.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_4527 polyketide synthase YP_001546722.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: nmu:Nmul_A1831 beta-ketoacyl synthase YP_001546723.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_4527 polyketide synthase YP_001546724.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_3620 polyketide synthase type I YP_001546725.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: sma:SAV2896 modular polyketide synthase YP_001546726.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_3620 polyketide synthase type I YP_001546727.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mxa:MXAN_3620 polyketide synthase type I YP_001546728.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: cko:CKO_00862 hypothetical protein YP_001546729.1 KEGG: cko:CKO_00863 hypothetical protein YP_001546730.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: lpn:lpg1941 acyl CoA dehydrogenase YP_001546731.1 TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; KEGG: rha:RHA1_ro02212 possible modular polyketide synthase enzyme YP_001546732.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_1611 amino acid adenylation YP_001546733.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: nfa:nfa50330 non-ribosomal peptide synthetase YP_001546734.1 PFAM: Thioesterase; KEGG: ana:alr2045 thioesterase YP_001546735.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pho:PH0913 ABC-2 type transport system ATP-binding protein YP_001546736.1 PFAM: ABC-2 type transporter; KEGG: pfu:PF1887 ABC-2 type transport system permease YP_001546737.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: rrs:RoseRS_2359 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001546738.1 KEGG: mlo:mll5961 transposase YP_001546739.1 KEGG: pde:Pden_3281 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001546740.1 KEGG: rxy:Rxyl_2506 transposase, IS4 YP_001546741.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fjo:Fjoh_4620 methyltransferase type 11 YP_001546742.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_2000 short-chain dehydrogenase/reductase SDR YP_001546743.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rca:Rcas_1120 haloacid dehalogenase domain protein hydrolase YP_001546744.1 KEGG: rca:Rcas_1119 hypothetical protein YP_001546745.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001546747.1 PFAM: cobalamin B12-binding domain protein; KEGG: rrs:RoseRS_2024 cobalamin B12-binding domain protein YP_001546748.1 KEGG: rca:Rcas_2999 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase YP_001546749.1 PFAM: glycosyl transferase 2; KEGG: sma:SAV4196 glycosyl transferase YP_001546750.1 PFAM: phosphoribosyltransferase; KEGG: rca:Rcas_2433 uracil phosphoribosyltransferase YP_001546751.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_1484 ClpA/B family protein YP_001546752.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001546754.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001546755.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_2811 tetratricopeptide TPR_2 YP_001546757.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_4157 phosphate binding protein YP_001546758.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4156 phosphate ABC transporter, inner membrane subunit PstC YP_001546759.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4155 phosphate ABC transporter, inner membrane subunit PstA YP_001546760.1 KEGG: rrs:RoseRS_4154 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001546761.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: drm:Dred_0710 phosphate uptake regulator, PhoU YP_001546762.1 PFAM: glycoside hydrolase 16; KEGG: cpf:CPF_1119 endo-beta-galactosidase, GlcNAc-alpha-1,4-Gal-releasing YP_001546763.1 PFAM: esterase; KEGG: rrs:RoseRS_2618 esterase YP_001546764.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_1346 glycosyl transferase group 1 YP_001546765.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: tbd:Tbd_0292 asparagine synthase, glutamine-hydrolyzing YP_001546766.1 TIGRFAM: capsular exopolysaccharide family; KEGG: rca:Rcas_3668 non-specific protein-tyrosine kinase YP_001546767.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rrs:RoseRS_4043 lipopolysaccharide biosynthesis protein YP_001546768.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rca:Rcas_3666 lipopolysaccharide biosynthesis protein YP_001546769.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3665 glycosyl transferase group 1 YP_001546770.1 KEGG: rca:Rcas_3036 hypothetical protein YP_001546771.1 PFAM: YCII-related; KEGG: sth:STH1648 hypothetical protein YP_001546772.1 KEGG: rrs:RoseRS_2061 hypothetical protein YP_001546773.1 PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: rca:Rcas_0007 PHP domain protein YP_001546774.1 PFAM: histidine triad (HIT) protein; KEGG: rca:Rcas_0006 histidine triad (HIT) protein YP_001546775.1 KEGG: rca:Rcas_1220 ErfK/YbiS/YcfS/YnhG family protein YP_001546776.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rca:Rcas_3473 cystathionine gamma-synthase YP_001546777.1 PFAM: MOFRL domain protein; KEGG: rca:Rcas_3272 hydroxypyruvate reductase YP_001546778.1 PFAM: extracellular solute-binding protein family 5; KEGG: rca:Rcas_1578 extracellular solute-binding protein family 5 YP_001546779.1 PFAM: SNARE associated Golgi protein; KEGG: afw:Anae109_4284 SNARE associated Golgi protein YP_001546780.1 KEGG: chu:CHU_3608 hypothetical protein YP_001546781.1 KEGG: sdn:Sden_2265 hypothetical protein YP_001546782.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sdn:Sden_2266 TPR repeat YP_001546783.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: pap:PSPA7_5691 inner membrane protein YbcI YP_001546784.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rca:Rcas_1486 FAD dependent oxidoreductase YP_001546785.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: aci:ACIAD3436 hypothetical protein YP_001546786.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: ttj:TTHA0703 cell wall endopeptidase, family M23/M37 YP_001546787.1 PFAM: ABC-3 protein; KEGG: rca:Rcas_1721 transcriptional regulator, MarR family YP_001546788.1 PFAM: ABC-3 protein; KEGG: rca:Rcas_1722 ABC-3 protein YP_001546789.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_1723 ABC transporter related YP_001546790.1 PFAM: periplasmic solute binding protein; KEGG: rrs:RoseRS_3070 periplasmic solute binding protein YP_001546791.1 PFAM: regulatory protein MarR; iron dependent repressor; FeoA family protein; KEGG: rrs:RoseRS_3986 FeoA family protein YP_001546792.1 KEGG: rca:Rcas_3479 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_001546793.1 PFAM: extracellular solute-binding protein family 1; KEGG: mmw:Mmwyl1_1651 extracellular solute-binding protein family 1 YP_001546794.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_2471 binding-protein-dependent transport systems inner membrane component YP_001546795.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_1354 binding-protein-dependent transport systems inner membrane component YP_001546796.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_4619 two component transcriptional regulator, winged helix family YP_001546797.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: gur:Gura_3419 magnesium and cobalt transport protein CorA YP_001546798.1 KEGG: rrs:RoseRS_4324 hypothetical protein YP_001546799.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rrs:RoseRS_4323 two component transcriptional regulator, LuxR family YP_001546800.1 PFAM: cell cycle protein; KEGG: rca:Rcas_3131 cell cycle protein YP_001546801.1 PFAM: protein kinase; Pyrrolo-quinoline quinone; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1465 protein kinase YP_001546802.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_1464 protein phosphatase 2C domain protein YP_001546803.1 PFAM: von Willebrand factor type A; KEGG: rca:Rcas_2162 von Willebrand factor type A YP_001546804.1 PFAM: Forkhead-associated protein; KEGG: rca:Rcas_2161 FHA domain containing protein YP_001546805.1 KEGG: rrs:RoseRS_1461 hypothetical protein YP_001546806.1 SMART: helix-turn-helix domain protein; KEGG: rrs:RoseRS_0529 helix-turn-helix domain protein YP_001546807.1 PFAM: protein of unknown function DUF520; KEGG: rca:Rcas_1283 protein of unknown function DUF520 YP_001546808.1 PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: amt:Amet_3602 oxidoreductase domain protein YP_001546809.1 PFAM: protein of unknown function DUF549; KEGG: mxa:MXAN_5968 tRNAHis guanylyltransferase YP_001546810.1 KEGG: mxa:MXAN_5969 hypothetical protein YP_001546811.1 SMART: Leucine-rich repeat, ribonuclease inhibitor subtype; leucine-rich repeat-containing protein typical subtype; leucine-rich repeat cysteine-containing subtype; KEGG: lpf:lpl1579 hypothetical protein YP_001546812.1 PFAM: Patatin; KEGG: rrs:RoseRS_0335 patatin YP_001546813.1 KEGG: ath:AT4G30000 dihydropterin pyrophosphokinase, / dihydropteroate synthase, / DHPS, TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001546814.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rrs:RoseRS_4390 signal transduction histidine kinase YP_001546815.1 PFAM: response regulator receiver YP_001546816.1 KEGG: rrs:RoseRS_2786 hypothetical protein YP_001546817.1 KEGG: nfa:nfa36460 alkaline phosphatase YP_001546818.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_2495 anti-sigma-factor antagonist YP_001546819.1 PFAM: VanW family protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rca:Rcas_2379 VanW family protein YP_001546820.1 PFAM: protein of unknown function UPF0118; KEGG: rca:Rcas_2485 protein of unknown function UPF0118 YP_001546821.1 KEGG: rca:Rcas_0805 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001546822.1 PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_1703 protein of unknown function DUF820 YP_001546824.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rca:Rcas_1080 site-specific DNA-methyltransferase (adenine-specific) YP_001546825.1 KEGG: stp:Strop_2001 alpha-amylase; PFAM: glycoside hydrolase starch-binding; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain YP_001546826.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: rca:Rcas_1271 ATP synthase F0, A subunit YP_001546827.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: rrs:RoseRS_0517 ATP synthase F0, C subunit YP_001546828.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001546829.1 PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: rca:Rcas_1268 H+transporting two-sector ATPase delta (OSCP) subunit YP_001546830.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001546831.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001546832.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001546833.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001546834.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: rca:Rcas_1263 cell shape determining protein, MreB/Mrl family YP_001546835.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mta:Moth_1692 metal dependent phosphohydrolase YP_001546836.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_001546837.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A2597 hypothetical protein YP_001546838.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: rca:Rcas_3531 DNA mismatch repair protein MutS YP_001546839.1 PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rrs:RoseRS_2023 prephenate dehydrogenase YP_001546840.1 KEGG: rrs:RoseRS_2022 hypothetical protein YP_001546841.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001546842.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1951 tetratricopeptide TPR_2 repeat protein YP_001546843.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_1065 glycosyl transferase, group 1 YP_001546844.1 KEGG: gfo:GFO_0023 secreted protein containing thrombospondin 3 repeats YP_001546845.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL5706 quinone binding protein; glyoxalase domain YP_001546846.1 KEGG: swo:Swol_0016 hypothetical protein YP_001546848.1 PFAM: Silent information regulator protein Sir2; KEGG: rxy:Rxyl_1341 silent information regulator protein Sir2 YP_001546849.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001546850.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rca:Rcas_1230 PDZ/DHR/GLGF domain protein YP_001546851.1 PFAM: regulatory protein LuxR; KEGG: rca:Rcas_1228 transcriptional regulator, LuxR family YP_001546852.1 KEGG: rrs:RoseRS_0251 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase YP_001546854.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_2161 anti-sigma-factor antagonist YP_001546855.1 KEGG: rca:Rcas_1943 membrane protein-like protein YP_001546857.1 PFAM: molybdopterin binding domain; KEGG: rca:Rcas_0347 competence/damage-inducible protein CinA YP_001546858.1 KEGG: rca:Rcas_0346 hypothetical protein YP_001546860.1 KEGG: rrs:RoseRS_2862 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase YP_001546861.1 KEGG: bja:blr7843 hypothetical protein YP_001546862.1 KEGG: gtn:GTNG_2664 6-phospho-1-fructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_001546863.1 KEGG: spu:584913 similar to serine active site containing 1 YP_001546864.1 KEGG: rrs:RoseRS_1240 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001546865.1 Catalyzes the conversion of citrate to isocitrate YP_001546866.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rca:Rcas_0031 adenylate/guanylate cyclase YP_001546869.1 KEGG: rrs:RoseRS_0141 transcriptional regulator, CdaR YP_001546870.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rrs:RoseRS_0828 single-strand binding protein YP_001546872.1 PFAM: alpha/beta hydrolase fold; KEGG: rca:Rcas_0806 alpha/beta hydrolase fold YP_001546873.1 PFAM: response regulator receiver; KEGG: sth:STH2399 two-component response regulator YP_001546874.1 KEGG: rca:Rcas_0805 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001546875.1 PFAM: response regulator receiver; KEGG: rca:Rcas_0804 response regulator receiver modulated diguanylate cyclase YP_001546876.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rca:Rcas_0803 N-acetylglucosamine-1-phosphate uridyltransferase-like protein YP_001546877.1 KEGG: rca:Rcas_0802 4-vinyl reductase 4VR YP_001546878.1 KEGG: rrs:RoseRS_3848 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001546879.1 PFAM: cytochrome P450; KEGG: syn:slr0574 cytochrome P450, CYP120A1 YP_001546880.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001546883.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tte:TTE2368 6-pyruvoyltetrahydropterin synthase YP_001546884.1 PFAM: Radical SAM domain protein; KEGG: sus:Acid_0302 radical SAM domain protein YP_001546885.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: rca:Rcas_1828 polysaccharide biosynthesis protein YP_001546886.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel YP_001546887.1 KEGG: rca:Rcas_1976 hypothetical protein YP_001546889.1 KEGG: mdo:100021983 hypothetical protein LOC100021983 YP_001546890.1 KEGG: ddi:DDBDRAFT_0188625 hypothetical protein YP_001546891.1 KEGG: rrs:RoseRS_1460 hypothetical protein YP_001546893.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001546894.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aha:AHA_1728 methyltransferase YP_001546895.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001546896.1 PFAM: dienelactone hydrolase; KEGG: aau:AAur_2327 dienelactone hydrolase (carboxymethylenebutenolidase) YP_001546897.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: pab:PAB1502 ornithine carbamoyltransferase YP_001546898.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001546899.1 KEGG: rrs:RoseRS_4059 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_001546900.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001546901.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_3360 GCN5-related N-acetyltransferase YP_001546902.1 PFAM: NUDIX hydrolase; KEGG: plt:Plut_0490 NUDIX/MutT family protein YP_001546903.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: rca:Rcas_3361 acetylglutamate kinase YP_001546904.1 KEGG: rrs:RoseRS_4052 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001546905.1 PFAM: regulatory protein MerR; Citrate synthase; KEGG: rxy:Rxyl_2556 citrate synthase YP_001546906.1 PFAM: Citrate synthase; KEGG: rxy:Rxyl_2557 citrate (Si)-synthase YP_001546908.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ana:alr8066 hypothetical protein YP_001546909.1 KEGG: rrs:RoseRS_3509 terpene synthase, metal-binding domain protein YP_001546910.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_3838 GCN5-related N-acetyltransferase YP_001546911.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tte:TTE0639 permeases of the drug/metabolite transporter (DMT) superfamily YP_001546912.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pfo:Pfl_1752 HAD-superfamily hydrolase subfamily IA, variant 3 YP_001546913.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; KEGG: rca:Rcas_3858 anti-sigma-factor antagonist YP_001546914.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_2255 periplasmic binding protein/LacI transcriptional regulator YP_001546915.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: mag:amb2362 uncharacterized protein involved in tolerance to divalent cations YP_001546916.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO3741 response regulator YP_001546917.1 KEGG: smd:Smed_5156 hypothetical protein YP_001546918.1 PFAM: high-affinity nickel-transporter; KEGG: sus:Acid_2371 high-affinity nickel-transporter YP_001546919.1 KEGG: rrs:RoseRS_2401 protein tyrosine phosphatase YP_001546920.1 KEGG: rrs:RoseRS_2250 hypothetical protein YP_001546921.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: rrs:RoseRS_3407 regulatory protein, FmdB family YP_001546922.1 KEGG: rrs:RoseRS_1050 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001546923.1 KEGG: rca:Rcas_3478 hypothetical protein YP_001546925.1 TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; KEGG: rca:Rcas_1214 glucose-1-phosphate thymidyltransferase YP_001546926.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1999 tetratricopeptide TPR_2 repeat protein YP_001546927.1 PFAM: cyclic nucleotide-binding; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sfu:Sfum_4027 cyclic nucleotide-binding protein YP_001546928.1 KEGG: azo:azo0417 translocation protein TolB YP_001546929.1 PFAM: alpha/beta hydrolase fold; KEGG: pcr:Pcryo_0751 alpha/beta hydrolase fold YP_001546930.1 KEGG: rrs:RoseRS_0549 hypothetical protein YP_001546932.1 PFAM: SpoVR family protein; KEGG: rrs:RoseRS_3527 SpoVR family protein YP_001546933.1 KEGG: fps:FP2266 hypothetical protein YP_001546934.1 PFAM: protein of unknown function DUF444; KEGG: rca:Rcas_1380 protein of unknown function DUF444 YP_001546935.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: rca:Rcas_1379 serine protein kinase, PrkA YP_001546937.1 PFAM: cytochrome P450; KEGG: bha:BH0579 cytochrome P450 hydroxylase YP_001546938.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: dra:DR_A0206 oligoendopeptidase F YP_001546939.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: rca:Rcas_3120 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001546940.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: rca:Rcas_3119 chorismate mutase YP_001546941.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: rrs:RoseRS_3410 carbohydrate kinase, YjeF related protein YP_001546942.1 TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase 3; Pyrimidine nucleoside phosphorylase domain; KEGG: gtn:GTNG_2243 pyrimidine nucleoside phosphorylase YP_001546943.1 KEGG: rca:Rcas_2962 Zn-dependent hydrolase of the beta-lactamase fold-like protein YP_001546944.1 KEGG: tfu:Tfu_2287 hypothetical protein YP_001546946.1 PFAM: von Willebrand factor type A; KEGG: rca:Rcas_1972 von Willebrand factor type A YP_001546948.1 KEGG: rca:Rcas_0895 hypothetical protein YP_001546949.1 KEGG: syn:slr1968 hypothetical protein YP_001546950.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: cch:Cag_0891 metacaspase YP_001546951.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0053 anti-sigma-factor antagonist YP_001546952.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0053 anti-sigma-factor antagonist YP_001546953.1 PFAM: regulatory protein RecX; KEGG: rrs:RoseRS_3117 regulatory protein RecX YP_001546954.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001546955.1 PFAM: PHP domain protein; KEGG: drm:Dred_2997 PHP C-terminal domain protein YP_001546956.1 KEGG: rrs:RoseRS_3078 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001546958.1 PFAM: regulatory protein TetR; KEGG: bld:BLi02194 YobS YP_001546959.1 KEGG: mlo:mlr5572 hypothetical protein YP_001546960.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rca:Rcas_2949 cobalamin synthesis protein P47K YP_001546961.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rca:Rcas_3544 peptidylprolyl isomerase YP_001546962.1 PFAM: histone family protein DNA-binding protein; KEGG: rca:Rcas_0673 histone family protein DNA-binding protein YP_001546963.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: rrs:RoseRS_4102 response regulator receiver and ANTAR domain protein YP_001546964.1 KEGG: rca:Rcas_3657 hypothetical protein YP_001546966.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_001546967.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rca:Rcas_4290 acetyl-CoA carboxylase, biotin carboxylase YP_001546969.1 KEGG: mjl:Mjls_5686 hypothetical protein YP_001546970.1 PFAM: von Willebrand factor type A; KEGG: rca:Rcas_3275 von Willebrand factor type A YP_001546971.1 PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2768 von Willebrand factor, type A YP_001546972.1 PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_2766 protein phosphatase 2C domain protein YP_001546973.1 PFAM: von Willebrand factor type A; KEGG: rca:Rcas_2762 von Willebrand factor type A YP_001546974.1 KEGG: drm:Dred_1240 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase YP_001546975.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: rca:Rcas_3050 peptidase C26 YP_001546976.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: rca:Rcas_2470 diguanylate cyclase with GAF sensor YP_001546977.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: sat:SYN_01534 Mg/Co/Ni transporter YP_001546978.1 KEGG: rca:Rcas_2165 hypothetical protein YP_001546979.1 PFAM: aldo/keto reductase; KEGG: dge:Dgeo_1402 aldo/keto reductase YP_001546980.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sus:Acid_3418 HNH endonuclease YP_001546981.1 PFAM: response regulator receiver; KEGG: mbn:Mboo_1120 response regulator receiver protein YP_001546982.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0032 hypothetical protein YP_001546983.1 PFAM: Roadblock/LC7 family protein; KEGG: rca:Rcas_0033 roadblock/LC7 family protein YP_001546984.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001546985.1 KEGG: rca:Rcas_2725 hypothetical protein YP_001546987.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; GTP1/OBG domain protein; KEGG: rrs:RoseRS_3577 GTP1/OBG sub domain protein YP_001546988.1 PFAM: sugar transferase; KEGG: rca:Rcas_4266 undecaprenyl-phosphate galactose phosphotransferase YP_001546989.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: rxy:Rxyl_0887 phospholipase D/transphosphatidylase YP_001546990.1 PFAM: ABC-2 type transporter; KEGG: deh:cbdb_A774 ABC transporter, permease YP_001546991.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: deb:DehaBAV1_0720 ABC transporter related YP_001546992.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: nar:Saro_1278 methyltransferase YP_001546993.1 PFAM: transcriptional regulator PadR family protein; KEGG: mmp:MMP0700 transcriptional regulator PadR-like family YP_001546994.1 KEGG: rrs:RoseRS_2786 hypothetical protein YP_001546995.1 KEGG: rrs:RoseRS_2674 AAA ATPase YP_001546996.1 PFAM: response regulator receiver; KEGG: ade:Adeh_0776 response regulator receiver domain protein (CheY-like) YP_001546997.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: rca:Rcas_2377 phosphoenolpyruvate carboxylase YP_001546998.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03779 long-chain-fatty-acid--CoA ligase YP_001546999.1 PFAM: response regulator receiver; KEGG: syn:slr1783 regulatory components of sensory transduction system YP_001547000.1 KEGG: rrs:RoseRS_0204 integral membrane sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein YP_001547001.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mag:amb0178 enoyl-CoA hydratase/carnithine racemase YP_001547002.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: rrs:RoseRS_4055 carbamoyl-phosphate synthase, small subunit YP_001547003.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sth:STH169 RNA polymerase ECF-type sigma factor YP_001547005.1 PFAM: N-acetylmuramoyl-L-alanine amidase 2; PA14 domain protein; SMART: Animal peptidoglycan recognition protein PGRP; PA14-related domain protein; KEGG: rrs:RoseRS_1610 N-acetylmuramoyl-L-alanine amidase, family 2 YP_001547006.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_1572 major facilitator superfamily MFS_1 YP_001547007.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cte:CT0498 ammonium transporter YP_001547008.1 PFAM: sodium/hydrogen exchanger; KEGG: bcy:Bcer98_1332 potassium efflux system protein YP_001547009.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: syf:Synpcc7942_1581 peptidase M14, carboxypeptidase A YP_001547011.1 PFAM: cytochrome c class I; KEGG: shm:Shewmr7_3864 cytochrome c oxidase, subunit II YP_001547012.1 PFAM: Cytochrome b/b6 domain; KEGG: sus:Acid_3505 cytochrome b/b6, N-terminal domain YP_001547013.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sth:STH3146 plastoquinol--plastocyanin reductase YP_001547017.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: hpa:HPAG1_0067 conserved ATP-binding protein YP_001547019.1 KEGG: rca:Rcas_2148 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001547020.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: rrs:RoseRS_3075 DNA polymerase III, delta subunit YP_001547021.1 KEGG: rrs:RoseRS_1026 hypothetical protein YP_001547023.1 KEGG: rca:Rcas_4315 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia YP_001547025.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001547026.1 PFAM: RDD domain containing protein; KEGG: rca:Rcas_3447 RDD domain containing protein YP_001547027.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_3801 protein of unknown function DUF95, transmembrane YP_001547028.1 PFAM: Peptidoglycan-binding LysM; KEGG: rrs:RoseRS_0425 peptidoglycan-binding LysM YP_001547029.1 KEGG: rrs:RoseRS_0854 hypothetical protein YP_001547030.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rca:Rcas_3889 methyltransferase type 11 YP_001547031.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_0847 glycosyl transferase, group 1 YP_001547032.1 KEGG: rrs:RoseRS_0853 membrane protein-like protein YP_001547033.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_0846 glycosyl transferase, group 1 YP_001547034.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_2177 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_001547035.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rca:Rcas_3890 hypothetical protein YP_001547036.1 KEGG: rca:Rcas_2505 hypothetical protein YP_001547037.1 KEGG: rca:Rcas_0080 hypothetical protein YP_001547038.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rca:Rcas_3084 NAD-dependent epimerase/dehydratase YP_001547039.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_2472 glycosyl transferase group 1 YP_001547040.1 KEGG: rrs:RoseRS_1839 hypothetical protein YP_001547041.1 KEGG: ppf:Pput_0188 conserved repeat domain YP_001547042.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2840 glycosyl transferase, group 1 YP_001547043.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_1837 methyltransferase type 12 YP_001547044.1 KEGG: rrs:RoseRS_1841 hypothetical protein YP_001547045.1 PFAM: cytochrome oxidase assembly; KEGG: mca:MCA1778 cytochrome oxidase assembly protein YP_001547046.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: dge:Dgeo_2290 HhH-GPD YP_001547047.1 PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr2176 probable hydrolase YP_001547048.1 KEGG: rrs:RoseRS_0144 amidase related to nicotinamidase-like protein YP_001547049.1 KEGG: ttj:TTHA1900 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; ExsB family protein YP_001547050.1 PFAM: NUDIX hydrolase; KEGG: rrs:RoseRS_0145 NUDIX hydrolase YP_001547052.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rrs:RoseRS_2411 sigma 54 modulation protein/ribosomal protein S30EA YP_001547053.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: rca:Rcas_1740 phosphohistidine phosphatase, SixA YP_001547054.1 KEGG: rca:Rcas_0340 hypothetical protein YP_001547055.1 KEGG: rca:Rcas_0340 hypothetical protein YP_001547056.1 KEGG: gsu:GSU0970 hypothetical protein YP_001547057.1 KEGG: mxa:MXAN_5936 hypothetical protein YP_001547058.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cyb:CYB_1321 acetyltransferase, GNAT family YP_001547059.1 KEGG: rrs:RoseRS_1096 hypothetical protein YP_001547060.1 KEGG: ava:Ava_2012 hypothetical protein YP_001547061.1 TIGRFAM: integral membrane protein TIGR02587; PFAM: conserved hypothetical protein; KEGG: gvi:gll2152 hypothetical protein YP_001547062.1 PFAM: thymidylate synthase complementing protein ThyX; KEGG: rca:Rcas_1568 thymidylate synthase complementing protein ThyX YP_001547063.1 KEGG: bld:BLi02059 subunit of DNA topoisomerase IV; RBL05628 YP_001547064.1 PFAM: THUMP domain protein; KEGG: cya:CYA_2199 ribosomal RNA large subunit methytransferase J YP_001547065.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001547066.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: ade:Adeh_3345 xanthine/uracil/vitamin C transporter YP_001547068.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: mxa:MXAN_4445 sensory box histidine kinase/response regulator YP_001547069.1 KEGG: rca:Rcas_2101 hypothetical protein YP_001547071.1 PFAM: NUDIX hydrolase; KEGG: ssu:SSU05_1020 NTP pyrophosphohydrolase including oxidative damage repair enzymes YP_001547072.1 PFAM: protein kinase; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: rrs:RoseRS_4604 protein kinase YP_001547073.1 PFAM: NUDIX hydrolase; KEGG: bay:RBAM_005720 hypothetical protein YP_001547074.1 PFAM: glycosyl transferase 2; KEGG: rca:Rcas_2745 glycosyl transferase 2 YP_001547075.1 TIGRFAM: mevalonate kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rrs:RoseRS_2135 mevalonate kinase YP_001547076.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS2844 acetyltransferase, GNAT family YP_001547077.1 PFAM: acriflavin resistance protein; KEGG: cac:CAC0370 cation efflux system protein, AcrB/AcrF/AcrD family YP_001547078.1 PFAM: regulatory protein MarR; KEGG: dsy:DSY3239 hypothetical protein YP_001547079.1 KEGG: rca:Rcas_0945 histidinol-phosphate phosphatase, TIGRFAM: histidinol-phosphate phosphatase, PFAM: inositol monophosphatase YP_001547080.1 SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_3340 serine/threonine protein kinase YP_001547081.1 PFAM: NUDIX hydrolase; KEGG: atu:Atu3719 MutT/NUDIX family protein YP_001547082.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gme:Gmet_2332 DegT/DnrJ/EryC1/StrS aminotransferase YP_001547083.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mgm:Mmc1_2166 NAD-dependent epimerase/dehydratase YP_001547084.1 KEGG: ppd:Ppro_0062 hypothetical protein YP_001547085.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0221 anti-sigma-factor antagonist YP_001547086.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rci:RCIX1517 Cu(2+)-binding/translocating P-type ATPase YP_001547087.1 PFAM: Heavy metal transport/detoxification protein; KEGG: rca:Rcas_0294 copper ion binding protein YP_001547088.1 PFAM: glycosyl transferase group 1; KEGG: deb:DehaBAV1_0869 glycosyl transferase, group 1 YP_001547089.1 TIGRFAM: DNA binding domain, excisionase YP_001547090.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rca:Rcas_1295 ubiquinone/menaquinone biosynthesis methyltransferase YP_001547091.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: tel:tll1031 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001547092.1 PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein YP_001547093.1 PFAM: beta-lactamase domain protein; KEGG: rrs:RoseRS_3945 beta-lactamase domain protein YP_001547094.1 PFAM: glycoside hydrolase 31; KEGG: spu:591870 hypothetical LOC591870 YP_001547095.1 PFAM: Fibronectin type III domain protein; glycoside hydrolase 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rrs:RoseRS_2452 alpha amylase, catalytic region YP_001547096.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rrs:RoseRS_2452 alpha amylase, catalytic region YP_001547097.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: cyb:CYB_0273 methylated-DNA-[protein]-cysteine S-methyltransferase YP_001547098.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1920 ABC transporter transmembrane transport protein YP_001547099.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV2246 ABC transporter ATP-binding protein YP_001547100.1 KEGG: tfu:Tfu_1922 solute-binding protein YP_001547101.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pmy:Pmen_0083 two component transcriptional regulator, LuxR family YP_001547102.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001547106.1 PFAM: Allophanate hydrolase subunit 1; KEGG: pae:PA4510 hypothetical protein YP_001547107.1 KEGG: rca:Rcas_1618 hypothetical protein YP_001547108.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rrs:RoseRS_2082 iron-containing alcohol dehydrogenase YP_001547109.1 KEGG: rca:Rcas_1785 hypothetical protein YP_001547110.1 KEGG: rrs:RoseRS_1021 hypothetical protein YP_001547111.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rca:Rcas_1784 AMP-dependent synthetase and ligase YP_001547112.1 KEGG: rca:Rcas_1783 hypothetical protein YP_001547113.1 PFAM: protein of unknown function DUF124; KEGG: rca:Rcas_3709 protein of unknown function DUF124 YP_001547114.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lin:lin2499 similar to acetyltransferase YP_001547115.1 KEGG: bov:BOV_0935 hypothetical protein YP_001547117.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: rrs:RoseRS_2361 response regulator receiver and ANTAR domain protein YP_001547118.1 PFAM: protein of unknown function DUF151; KEGG: rrs:RoseRS_0115 protein of unknown function DUF151 YP_001547119.1 PFAM: dihydroorotate dehydrogenase; KEGG: rrs:RoseRS_2860 dihydroorotate oxidase YP_001547120.1 PFAM: Allophanate hydrolase subunit 2; KEGG: mca:MCA0477 allophanate hydrolase, subunit 2 YP_001547121.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: rca:Rcas_0145 transcriptional regulator, LuxR family YP_001547122.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: rca:Rcas_3000 metal dependent phosphohydrolase YP_001547123.1 TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mxa:MXAN_6266 2',3'-cyclic-nucleotide 2'-phosphodiesterase YP_001547124.1 PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: rca:Rcas_1617 shikimate/quinate 5-dehydrogenase YP_001547126.1 PFAM: protein of unknown function DUF1696; KEGG: pna:Pnap_1530 protein of unknown function DUF1696 YP_001547127.1 PFAM: protease-associated PA domain protein; KEGG: mac:MA4034 hypothetical protein YP_001547128.1 PFAM: alpha/beta hydrolase fold; KEGG: nar:Saro_2613 alpha/beta hydrolase YP_001547129.1 KEGG: rrs:RoseRS_1772 hypothetical protein YP_001547130.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rca:Rcas_2049 single-strand binding protein YP_001547131.1 KEGG: yen:YE1910 hypothetical protein YP_001547132.1 KEGG: pth:PTH_0005 type IIA topoisomerase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; helix-turn-helix domain protein; Hedgehog/intein hint domain protein YP_001547133.1 KEGG: rca:Rcas_4196 hypothetical protein YP_001547134.1 PFAM: Abortive infection protein YP_001547135.1 PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_3439 serine phosphatase YP_001547136.1 KEGG: hch:HCH_01594 molecular chaperone, HSP90 family YP_001547137.1 PFAM: ATP-binding region ATPase domain protein; KEGG: hch:HCH_01594 molecular chaperone, HSP90 family YP_001547139.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001547140.1 KEGG: rca:Rcas_2655 hypothetical protein YP_001547141.1 PFAM: LamB/YcsF family protein; KEGG: slo:Shew_0006 LamB/YcsF family protein YP_001547142.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ana:alr7628 probable ion channel unknown protein YP_001547143.1 KEGG: syn:slr1726 hypothetical protein YP_001547144.1 PFAM: NLP/P60 protein; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: rca:Rcas_1215 NLP/P60 protein YP_001547145.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_3121 glycosyl transferase, group 1 YP_001547147.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR domain protein; KEGG: bov:BOV_A0393 3-hydroxyacyl-CoA dehydrogenase type II YP_001547148.1 KEGG: ttj:TTHA0690 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001547149.1 KEGG: rca:Rcas_1690 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_001547150.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: rrs:RoseRS_4584 cobalamin 5'-phosphate synthase YP_001547151.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rca:Rcas_1109 acyl-CoA dehydrogenase domain protein YP_001547152.1 PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: bcz:pE33L466_0332 possible choloylglycine hydrolase YP_001547153.1 KEGG: rrs:RoseRS_2969 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001547154.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rca:Rcas_1887 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_001547155.1 PFAM: regulatory protein MarR; KEGG: sat:SYN_00652 transcriptional regulator, MarR family YP_001547156.1 KEGG: amt:Amet_2150 hypothetical protein YP_001547157.1 KEGG: chy:CHY_1719 hypothetical protein YP_001547158.1 KEGG: chy:CHY_1718 MukB N-terminal domain/M protein repeat protein YP_001547159.1 KEGG: amt:Amet_2153 hypothetical protein YP_001547160.1 PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: rrs:RoseRS_3189 HhH-GPD family protein YP_001547161.1 PFAM: alpha/beta hydrolase fold; KEGG: mac:MA3635 hydrolase YP_001547163.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_0205 response regulator receiver protein YP_001547164.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0204 integral membrane sensor hybrid histidine kinase YP_001547165.1 KEGG: bpa:BPP4301 reductase YP_001547166.1 KEGG: gur:Gura_0093 hypothetical protein YP_001547167.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rca:Rcas_4105 thioredoxin YP_001547168.1 PFAM: adenylate kinase; KEGG: rca:Rcas_3396 adenylate kinase YP_001547169.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mem:Memar_1121 methyltransferase type 11 YP_001547171.1 KEGG: lmf:LMOf2365_2730 transaldolase, TIGRFAM: transaldolase; PFAM: Transaldolase YP_001547172.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rca:Rcas_1944 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001547173.1 PFAM: protein of unknown function DUF205; KEGG: tte:TTE1618 hypothetical protein YP_001547174.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rca:Rcas_4076 phage SPO1 DNA polymerase-related protein YP_001547176.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rrs:RoseRS_0875 beta-lactamase domain protein YP_001547177.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: gur:Gura_0383 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001547178.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mbu:Mbur_0884 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001547179.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: rxy:Rxyl_3202 leucyl-tRNA synthetase YP_001547180.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_2851 PAS/PAC sensor protein YP_001547181.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_2851 PAS/PAC sensor protein YP_001547182.1 TIGRFAM: PAS sensor protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-4 domain protein; KEGG: rrs:RoseRS_0409 PAS/PAC sensor protein YP_001547186.1 KEGG: rca:Rcas_0529 hypothetical protein YP_001547187.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001547188.1 SMART: response regulator receiver YP_001547189.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: psa:PST_4054 sensory box histidine kinase YP_001547191.1 PFAM: protein of unknown function DUF839; KEGG: lic:LIC20047 hypothetical protein YP_001547192.1 KEGG: rrs:RoseRS_1052 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_001547193.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_3579 NAD-dependent epimerase/dehydratase YP_001547194.1 PFAM: O-antigen polymerase; KEGG: rca:Rcas_4268 O-antigen polymerase YP_001547195.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rca:Rcas_4269 NAD-dependent epimerase/dehydratase YP_001547196.1 PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_3582 conserved hypothetical protein 374 YP_001547197.1 KEGG: btk:BT9727_2476 hypothetical protein YP_001547198.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_4271 glycosyl transferase group 1 YP_001547199.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001547200.1 KEGG: rrs:RoseRS_1960 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_001547201.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001547202.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pnu:Pnuc_2038 GCN5-related N-acetyltransferase YP_001547203.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: rca:Rcas_1550 branched-chain amino acid aminotransferase YP_001547204.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rrs:RoseRS_1963 2-isopropylmalate synthase/homocitrate synthase YP_001547205.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: rca:Rcas_1552 prephenate dehydratase YP_001547206.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rca:Rcas_1553 2-isopropylmalate synthase YP_001547207.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001547208.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rca:Rcas_1556 acetolactate synthase, small subunit YP_001547209.1 KEGG: rrs:RoseRS_1968 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein YP_001547210.1 KEGG: sth:STH2685 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_001547213.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: ter:Tery_1841 peptidase C14, caspase catalytic subunit P20 YP_001547218.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rrs:RoseRS_4457 protein of unknown function DUF224, cysteine-rich region domain protein YP_001547220.1 PFAM: phosphoribosylglycinamide synthetase; KEGG: rrs:RoseRS_0351 phosphoribosylamine--glycine ligase YP_001547221.1 PFAM: glycoside hydrolase 57; Domain of unknown function DUF1957; KEGG: pfu:PF1393 hypothetical protein YP_001547222.1 PFAM: aldo/keto reductase; KEGG: afw:Anae109_2886 aldo/keto reductase YP_001547223.1 PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_0747 extracellular solute-binding protein, family 1 YP_001547224.1 PFAM: Roadblock/LC7 family protein; KEGG: rrs:RoseRS_0746 roadblock/LC7 family protein YP_001547225.1 PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4391 O-antigen polymerase YP_001547226.1 TIGRFAM: conserved repeat domain; KEGG: bat:BAS3452 conserved repeat domain protein YP_001547227.1 PFAM: aminodeoxychorismate lyase; KEGG: rrs:RoseRS_1563 aminodeoxychorismate lyase YP_001547228.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: rca:Rcas_3415 shikimate 5-dehydrogenase YP_001547229.1 PFAM: peptidase A24A prepilin type IV; KEGG: rca:Rcas_3416 peptidase A24A domain protein YP_001547230.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: rrs:RoseRS_4575 formiminotransferase-cyclodeaminase YP_001547231.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: rrs:RoseRS_4392 methylenetetrahydrofolate dehydrogenase (NADP(+)) YP_001547232.1 KEGG: rca:Rcas_3893 hypothetical protein YP_001547233.1 PFAM: peptidase M23B; KEGG: rca:Rcas_0038 peptidase M23B YP_001547234.1 PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein YP_001547235.1 KEGG: rrs:RoseRS_4122 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001547236.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rca:Rcas_1903 glutamate synthase (ferredoxin) YP_001547237.1 KEGG: bja:blr2287 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001547238.1 PFAM: peptidase domain protein YP_001547244.1 KEGG: nha:Nham_3087 outer membrane autotransporter barrel YP_001547245.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sth:STH2728 two-component response regulator YP_001547246.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sth:STH493 two-component sensor histidine kinase YP_001547247.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: mta:Moth_0075 UDP-N-acetylglucosamine pyrophosphorylase YP_001547248.1 KEGG: rca:Rcas_0737 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_001547249.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_4294 glycosyl transferase group 1 YP_001547250.1 KEGG: aav:Aave_3088 peptidase S9, prolyl oligopeptidase active site domain protein YP_001547251.1 KEGG: mgi:Mflv_2056 hypothetical protein YP_001547252.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_1288 glycosyl transferase group 1 YP_001547253.1 PFAM: Polyprenyl synthetase; KEGG: rca:Rcas_1286 polyprenyl synthetase YP_001547254.1 PFAM: Penicillinase repressor; KEGG: rrs:RoseRS_0532 transcriptional repressor, CopY family YP_001547255.1 KEGG: rrs:RoseRS_0531 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001547256.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_1698 streptothricin acetyltransferase YP_001547257.1 PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_2754 beta-lactamase-like protein YP_001547258.1 PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_2754 beta-lactamase-like protein YP_001547259.1 PFAM: phosphofructokinase; KEGG: gsu:GSU1703 6-phosphofructokinase YP_001547260.1 PFAM: transposase IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family YP_001547261.1 KEGG: afw:Anae109_0139 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein YP_001547262.1 TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; Miro domain protein; Ras family protein; KEGG: rrs:RoseRS_2141 small GTP-binding protein YP_001547263.1 KEGG: rrs:RoseRS_1841 hypothetical protein YP_001547264.1 PFAM: PT repeat-containing protein; KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001547265.1 PFAM: PT repeat-containing protein; KEGG: bpd:BURPS668_A0166 rhs element Vgr protein YP_001547266.1 PFAM: protein of unknown function DUF1294; KEGG: cpf:CPF_0531 hypothetical protein YP_001547267.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rrs:RoseRS_3080 threonine synthase YP_001547268.1 KEGG: rrs:RoseRS_3079 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_001547269.1 KEGG: afu:AF1398 hypothetical protein YP_001547270.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_4384 GCN5-related N-acetyltransferase YP_001547271.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rca:Rcas_0724 Glu/Leu/Phe/Val dehydrogenase YP_001547272.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_2958 glycosyl transferase group 1 YP_001547273.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rca:Rcas_2104 dihydrolipoamide dehydrogenase YP_001547274.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rrs:RoseRS_2839 Orn/DAP/Arg decarboxylase 2 YP_001547275.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mag:amb1112 signal transduction histidine kinase YP_001547276.1 KEGG: hha:Hhal_2262 hypothetical protein YP_001547279.1 PFAM: protein of unknown function DUF909 YP_001547282.1 PFAM: pentapeptide repeat protein; KEGG: tel:tll2036 hypothetical protein YP_001547283.1 PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl transferase 28; KEGG: abo:ABO_1783 glycosyl transferase YP_001547284.1 PFAM: esterase; KEGG: mmr:Mmar10_2741 esterase YP_001547286.1 PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: det:DET0908 arsenical pump membrane protein YP_001547289.1 KEGG: drm:Dred_0708 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein YP_001547290.1 PFAM: protein kinase; WD40 domain protein beta Propeller; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1519 protein kinase YP_001547291.1 PFAM: protein kinase; WD40 domain protein beta Propeller; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_2393 serine/threonine protein kinase YP_001547292.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_3340 serine/threonine protein kinase YP_001547293.1 PFAM: Forkhead-associated protein; KEGG: rca:Rcas_3047 FHA domain containing protein YP_001547294.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: rca:Rcas_0200 histidinol-phosphate aminotransferase YP_001547295.1 PFAM: inositol monophosphatase; KEGG: rrs:RoseRS_1153 inositol-phosphate phosphatase YP_001547296.1 KEGG: rrs:RoseRS_1623 helicase YP_001547297.1 KEGG: mgr:MGCH7_ch7g753 hypothetical protein YP_001547298.1 KEGG: syf:Synpcc7942_1790 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_001547299.1 PFAM: protein of unknown function DUF1349; KEGG: ana:all7165 hypothetical protein YP_001547300.1 PFAM: metalloenzyme domain protein; KEGG: rca:Rcas_0933 metalloenzyme domain protein YP_001547301.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rca:Rcas_0847 PHP domain protein YP_001547302.1 KEGG: rrs:RoseRS_1536 hypothetical protein YP_001547303.1 PFAM: protein of unknown function UPF0118; KEGG: rca:Rcas_2589 protein of unknown function UPF0118 YP_001547304.1 PFAM: ferric-uptake regulator; KEGG: rrs:RoseRS_1293 ferric uptake regulator, Fur family YP_001547305.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rrs:RoseRS_4590 DNA protecting protein DprA YP_001547306.1 KEGG: ppd:Ppro_2908 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001547307.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: sma:SAV7011 uracil-DNA glycosylase YP_001547308.1 PFAM: CHRD domain containing protein; KEGG: dra:DR_B0065 hypothetical protein YP_001547309.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_2233 GCN5-related N-acetyltransferase YP_001547311.1 KEGG: rxy:Rxyl_1283 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_001547312.1 KEGG: abo:ABO_1161 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001547313.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: rrs:RoseRS_0842 acetylornithine and succinylornithine aminotransferase YP_001547314.1 PFAM: Appr-1-p processing domain protein; KEGG: cth:Cthe_2058 Appr-1-p processing protein YP_001547315.1 KEGG: hch:HCH_06998 hypothetical protein YP_001547317.1 PFAM: Abortive infection protein; KEGG: mmr:Mmar10_1518 abortive infection protein YP_001547318.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: rfr:Rfer_3727 aspartate racemase YP_001547319.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_1625 hypothetical protein YP_001547320.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate YP_001547321.1 PFAM: ROK family protein; KEGG: mxa:MXAN_6549 transcriptional regulator, ROK family YP_001547322.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC4030 maltose ABC transporter substrate-binding protein YP_001547323.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ade:Adeh_4135 ABC sugar transporter, inner membrane subunit YP_001547324.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mxa:MXAN_5379 sugar ABC transporter, permease YP_001547325.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: rca:Rcas_3739 succinyl-CoA synthetase, alpha subunit YP_001547326.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rca:Rcas_3217 GDP-mannose 4,6-dehydratase YP_001547327.1 PFAM: helix-turn-helix domain protein YP_001547328.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001547329.1 PFAM: protein of unknown function UPF0227; KEGG: syf:Synpcc7942_1349 hypothetical protein YP_001547330.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: rca:Rcas_1511 amidophosphoribosyltransferase YP_001547331.1 KEGG: rxy:Rxyl_1668 hypothetical protein YP_001547332.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0696 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001547333.1 PFAM: Ricin B lectin; KEGG: sde:Sde_3710 arabinogalactan endo-1,4-beta-galactosidase YP_001547334.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: rrs:RoseRS_0100 GTP-binding protein TypA YP_001547335.1 PFAM: restriction endonuclease; KEGG: chy:CHY_1700 prophage LambdaCh01, restriction endonuclease YP_001547336.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bca:BCE_3536 acetyltransferase, GNAT family YP_001547337.1 KEGG: rha:RHA1_ro00029 probable ABC transporter, permease component YP_001547338.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rci:RCIX2241 ABC-type transport system, ATPase component YP_001547339.1 KEGG: rxy:Rxyl_0088 regulatory protein, MarR YP_001547340.1 PFAM: regulatory protein ArsR; KEGG: swo:Swol_2087 transcriptional regulator YP_001547341.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mca:MCA1900 cation efflux family protein YP_001547342.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: rrs:RoseRS_3438 excinuclease ABC, A subunit YP_001547343.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: gtn:GTNG_0391 low molecular weight phosphotyrosine protein, phosphatase YP_001547344.1 PFAM: FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: syf:Synpcc7942_1337 integrins alpha chain YP_001547345.1 PFAM: aldo/keto reductase; KEGG: stp:Strop_3323 aldo/keto reductase YP_001547346.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bld:BLi02721 cytidine/deoxycytidine deaminase; RBL03904 YP_001547347.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rca:Rcas_0738 CBS domain containing protein YP_001547348.1 KEGG: rca:Rcas_3378 hypothetical protein YP_001547349.1 KEGG: bpd:BURPS668_A1479 polyketide synthase PksL YP_001547350.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rca:Rcas_3728 aminotransferase class I and II YP_001547352.1 PFAM: glycosyl transferase 2; KEGG: rca:Rcas_3730 glycosyl transferase 2 YP_001547353.1 PFAM: adenylosuccinate synthetase; KEGG: rca:Rcas_0444 adenylosuccinate synthase YP_001547354.1 KEGG: drm:Dred_1642 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase YP_001547355.1 KEGG: hch:HCH_00727 hypothetical protein YP_001547356.1 PFAM: Negative transcriptional regulator; KEGG: dar:Daro_0091 negative transcriptional regulator YP_001547357.1 KEGG: rso:RSc3100 hypothetical protein YP_001547358.1 PFAM: O-methyltransferase 3; KEGG: xau:Xaut_4298 O-methyltransferase 3 YP_001547359.1 PFAM: UvrD/REP helicase; KEGG: rrs:RoseRS_0142 UvrD/REP helicase YP_001547360.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH1955 ABC transporter permease YP_001547361.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_3276 binding-protein-dependent transport systems inner membrane component YP_001547363.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_4314 glycosyl transferase group 1 YP_001547364.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3625 protein kinase YP_001547365.1 KEGG: rca:Rcas_3039 hypothetical protein YP_001547366.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pin:Ping_1414 methylated-DNA--protein-cysteine methyltransferase YP_001547367.1 KEGG: fps:FP1034 hypothetical protein YP_001547368.1 PFAM: acyl-CoA reductase; KEGG: gtn:GTNG_2039 possible acyl protein synthase/acyl-CoA reductase-like protein YP_001547369.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rrs:RoseRS_4146 acyl-CoA dehydrogenase domain protein YP_001547370.1 KEGG: rrs:RoseRS_1272 SAF domain YP_001547371.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_1273 response regulator receiver protein YP_001547372.1 PFAM: type II secretion system protein E; KEGG: rca:Rcas_1682 type II secretion system protein E YP_001547373.1 PFAM: type II secretion system protein; KEGG: rrs:RoseRS_1275 type II secretion system protein YP_001547374.1 PFAM: type II secretion system protein; KEGG: rrs:RoseRS_1276 type II secretion system protein YP_001547375.1 PFAM: protein of unknown function DUF192; KEGG: rca:Rcas_1679 protein of unknown function DUF192 YP_001547376.1 PFAM: Ppx/GppA phosphatase; KEGG: rrs:RoseRS_0819 Ppx/GppA phosphatase YP_001547377.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rrs:RoseRS_2153 ErfK/YbiS/YcfS/YnhG family protein YP_001547378.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: rrs:RoseRS_1289 16S rRNA processing protein RimM YP_001547379.1 KEGG: rrs:RoseRS_1288 RNA-binding protein (contains KH domain)-like protein YP_001547380.1 PFAM: ribosomal protein S16; KEGG: rrs:RoseRS_1287 ribosomal protein S16 YP_001547381.1 KEGG: rrs:RoseRS_1286 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001547382.1 PFAM: DoxX family protein; KEGG: dra:DR_1841 hypothetical protein YP_001547383.1 KEGG: rca:Rcas_1742 uncharacterized metal-binding protein-like protein YP_001547386.1 KEGG: rca:Rcas_0328 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_001547387.1 KEGG: rrs:RoseRS_1087 hypothetical protein YP_001547388.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_001547389.1 PFAM: peptidase M19 renal dipeptidase; KEGG: dge:Dgeo_1112 peptidase M19, renal dipeptidase YP_001547391.1 PFAM: phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; KEGG: sus:Acid_1476 threonyl/alanyl tRNA synthetase, SAD YP_001547392.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001547393.1 PFAM: dehydrogenase E1 component; KEGG: rca:Rcas_2013 pyruvate dehydrogenase (acetyl-transferring) YP_001547394.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: rca:Rcas_2012 transketolase central region YP_001547395.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rrs:RoseRS_1726 dihydrolipoyllysine-residue succinyltransferase YP_001547396.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: rrs:RoseRS_1035 tRNA/rRNA methyltransferase (SpoU) YP_001547397.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001547398.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: rrs:RoseRS_1032 translation initiation factor IF-3 YP_001547399.1 PFAM: endodeoxyribonuclease RusA YP_001547400.1 TIGRFAM: conserved repeat domain; KEGG: hsa:4583 mucin 2, oligomeric mucus/gel-forming YP_001547401.1 TIGRFAM: sortase; PFAM: peptidase C60 sortase A and B; KEGG: rca:Rcas_1727 sortase YP_001547402.1 KEGG: rca:Rcas_4047 hypothetical protein YP_001547404.1 KEGG: sfu:Sfum_4010 hypothetical protein YP_001547405.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2372 radical SAM domain protein YP_001547406.1 KEGG: rde:RD1_3851 hypothetical protein YP_001547407.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sma:SAV4537 two-component system response regulator YP_001547408.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_0805 multi-sensor signal transduction histidine kinase YP_001547409.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0696 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001547410.1 KEGG: rca:Rcas_2037 transmembrane anti-sigma factor YP_001547411.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rca:Rcas_2773 peptidase S8 and S53 subtilisin kexin sedolisin YP_001547412.1 PFAM: membrane protein of unknown function; KEGG: rrs:RoseRS_3547 membrane protein of unknown function YP_001547413.1 PFAM: RDD domain containing protein; KEGG: nfa:nfa2680 hypothetical protein YP_001547414.1 KEGG: rrs:RoseRS_2754 hypothetical protein YP_001547415.1 KEGG: rca:Rcas_3420 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001547416.1 KEGG: rca:Rcas_3419 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001547417.1 KEGG: hsa:4583 mucin 2, oligomeric mucus/gel-forming YP_001547418.1 KEGG: rca:Rcas_2024 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase YP_001547419.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: dra:DR_0964 carboxypeptidase-related protein YP_001547420.1 PFAM: major facilitator superfamily MFS_1; KEGG: ana:alr2188 similar to macrolide-efflux pump YP_001547421.1 KEGG: sen:SACE_4504 secreted protein YP_001547422.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO3741 response regulator YP_001547423.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: fal:FRAAL1627 two-component system sensor histidine kinase YP_001547424.1 PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_4383 glycosyl transferase, group 1 YP_001547426.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001547427.1 KEGG: rpe:RPE_0734 hypothetical protein YP_001547428.1 PFAM: regulatory protein TetR; KEGG: afw:Anae109_1020 transcriptional regulator, TetR family YP_001547429.1 PFAM: PspC domain protein; KEGG: rca:Rcas_2330 phage shock protein C, PspC YP_001547430.1 PFAM: regulatory protein ArsR; KEGG: sru:SRU_2462 bacterial regulatory proteins, ArsR family YP_001547431.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: rca:Rcas_0418 RNA polymerase, sigma 70 subunit, RpoD family YP_001547432.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rme:Rmet_3151 molybdopterin oxidoreductase YP_001547433.1 KEGG: rca:Rcas_4185 hypothetical protein YP_001547434.1 PFAM: phosphoglucose isomerase (PGI); KEGG: drm:Dred_2902 glucose-6-phosphate isomerase YP_001547435.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: rrs:RoseRS_0947 CHAD domain containing protein YP_001547436.1 KEGG: dra:DR_A0258 hypothetical protein YP_001547437.1 KEGG: rca:Rcas_0340 hypothetical protein YP_001547438.1 KEGG: xfa:XF2616 hypothetical protein YP_001547439.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: dra:DR_0453 guanyl-specific ribonuclease SA YP_001547440.1 KEGG: tfu:Tfu_1922 solute-binding protein YP_001547441.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: rrs:RoseRS_1998 oligoendopeptidase, PepF/M3 family YP_001547442.1 PFAM: extracellular solute-binding protein family 5; KEGG: rca:Rcas_0320 extracellular solute-binding protein family 5 YP_001547443.1 KEGG: deb:DehaBAV1_1306 preprotein translocase, SecG subunit YP_001547444.1 dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001547445.1 KEGG: rrs:RoseRS_3314 hypothetical protein YP_001547446.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_001547447.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_1266 GCN5-related N-acetyltransferase YP_001547448.1 PFAM: glycosyl transferase 51; penicillin-binding protein transpeptidase; KEGG: rca:Rcas_0508 peptidoglycan glycosyltransferase YP_001547449.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001547450.1 KEGG: rrs:RoseRS_2563 hypothetical protein YP_001547451.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001547452.1 PFAM: leucine-rich repeat protein; KEGG: lic:LIC10830 lipoprotein YP_001547453.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rrs:RoseRS_4124 phosphomannomutase YP_001547454.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: sen:SACE_6399 protein of unknown function DUF899,thioredoxin-like YP_001547455.1 PFAM: integrase; integrase domain protein SAM domain protein; KEGG: rca:Rcas_0047 integrase YP_001547456.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001547457.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0221 anti-sigma-factor antagonist YP_001547458.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_0220 3-beta hydroxysteroid dehydrogenase/isomerase YP_001547459.1 KEGG: rrs:RoseRS_1851 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001547460.1 KEGG: rrs:RoseRS_1115 hypothetical protein YP_001547461.1 SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_4285 adenylate/guanylate cyclase YP_001547462.1 KEGG: tva:TVAG_472370 conserved hypothetical protein Pfam: Cytadhesin_P30 PROSITE: EGF_1 CYS_RICH GLN_RICH PRO_RICH YP_001547464.1 KEGG: mxa:MXAN_5284 hypothetical protein YP_001547466.1 PFAM: Radical SAM domain protein; KEGG: chy:CHY_1804 radical SAM domain protein YP_001547467.1 PFAM: ABC transporter related; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: AAA ATPase; KEGG: acr:Acry_1854 ABC transporter related YP_001547468.1 PFAM: ribonuclease H; KEGG: rca:Rcas_1189 ribonuclease H YP_001547469.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rca:Rcas_1334 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_001547470.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cvi:CV_3051 probable transcriptional regulator lacI family YP_001547471.1 TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: dge:Dgeo_2173 phosphoenolpyruvate-protein phosphotransferase YP_001547472.1 PFAM: PfkB domain protein; KEGG: dge:Dgeo_2174 1-phosphofructokinase YP_001547473.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: bte:BTH_II0908 protein-N p-phosphohistidine-sugar phosphotransferase YP_001547474.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bha:BH2806 carboxylesterase YP_001547475.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: rca:Rcas_0947 nucleotidyl transferase YP_001547476.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: rca:Rcas_0946 glucose-1-phosphate adenylyltransferase YP_001547477.1 KEGG: bvi:Bcep1808_3443 hypothetical protein YP_001547478.1 KEGG: mjl:Mjls_2341 hypothetical protein YP_001547479.1 PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein YP_001547480.1 PFAM: ABC-1 domain protein; KEGG: rca:Rcas_0170 ABC-1 domain protein YP_001547481.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ana:alr3183 bacterioferritin comigratory protein YP_001547482.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ana:alr3183 bacterioferritin comigratory protein YP_001547483.1 PFAM: transcriptional activator domain; KEGG: rrs:RoseRS_4327 transcriptional activator domain YP_001547484.1 PFAM: creatinase; peptidase M24; KEGG: sth:STH1865 Xaa-Pro dipeptidase YP_001547485.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: chy:CHY_1872 translation elongation factor P YP_001547486.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rca:Rcas_2899 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001547487.1 KEGG: rca:Rcas_2900 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_001547488.1 SMART: AAA ATPase; KEGG: lca:LSEI_2846 ABC-type antimicrobial peptide transport system, ATPase component YP_001547489.1 KEGG: rrs:RoseRS_2861 hypothetical protein YP_001547490.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: gka:GK0187 aldehyde dehydrogenase YP_001547491.1 PFAM: response regulator receiver; KEGG: cya:CYA_2336 response regulator YP_001547492.1 PFAM: NUDIX hydrolase; KEGG: cbh:CLC_0539 hydrolase, NUDIX family YP_001547495.1 KEGG: drm:Dred_0876 transposase IS200-family protein YP_001547496.1 KEGG: dge:Dgeo_2272 transposase, IS891/IS1136/IS1341; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_001547497.1 PFAM: nitroreductase; KEGG: dge:Dgeo_1628 nitroreductase YP_001547498.1 PFAM: DinB family protein; KEGG: msm:MSMEG_0307 transcriptional regulator, AraC family protein YP_001547500.1 PFAM: glycosyl transferase 2; KEGG: rrs:RoseRS_4605 glycosyl transferase, family 2 YP_001547501.1 KEGG: dge:Dgeo_2260 hypothetical protein YP_001547502.1 PFAM: glycoside hydrolase 57; Domain of unknown function DUF1957; KEGG: rca:Rcas_1501 domain of unknown function DUF1957 YP_001547503.1 KEGG: bcz:BCZK2513 hypothetical protein YP_001547504.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; KEGG: lga:LGAS_0051 SAM-dependent methyltransferase YP_001547505.1 KEGG: nca:Noca_4629 hypothetical protein YP_001547507.1 KEGG: pmy:Pmen_2136 hypothetical protein YP_001547508.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gvi:gll3462 hypothetical protein YP_001547510.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: dge:Dgeo_1084 oligoendopeptidase F YP_001547511.1 KEGG: rrs:RoseRS_4047 hypothetical protein YP_001547512.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001547513.1 PFAM: hydroxymethylglutaryl-coenzyme A reductase; KEGG: rrs:RoseRS_0065 secreted hydrolase-like protein YP_001547518.1 KEGG: rrs:RoseRS_4206 hypothetical protein YP_001547519.1 PFAM: peptidase M23B; KEGG: rrs:RoseRS_1343 peptidase M23B YP_001547520.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: maq:Maqu_2805 acyl-CoA dehydrogenase domain protein YP_001547521.1 PFAM: fumarate lyase; KEGG: rrs:RoseRS_3341 fumarate lyase YP_001547522.1 PFAM: Poly(ADP-ribose) polymerase catalytic region; WGR domain protein; KEGG: xla:734426 hypothetical protein MGC115350 YP_001547524.1 TIGRFAM: alanine racemase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; alanine racemase domain protein; Mur ligase middle domain protein; KEGG: rca:Rcas_1898 alanine racemase YP_001547525.1 PFAM: ATP-cone domain protein; KEGG: rca:Rcas_0124 ribonucleoside-triphosphate reductase YP_001547526.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_3188 integral membrane sensor signal transduction histidine kinase YP_001547527.1 PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_2499 protein serine phosphatase with GAF(s) sensor(s) YP_001547528.1 PFAM: class II aldolase/adducin family protein; KEGG: sus:Acid_0320 class II aldolase/adducin family protein YP_001547530.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_2751 anti-sigma-factor antagonist YP_001547531.1 PFAM: FAD linked oxidase domain protein; Cytokinin dehydrogenase 1 FAD and cytokinin binding; KEGG: mxa:MXAN_6144 oxygen-dependent FAD-linked oxidoreductase YP_001547532.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: lre:Lreu_0347 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001547533.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rca:Rcas_1673 peptidoglycan glycosyltransferase YP_001547534.1 KEGG: rca:Rcas_1672 hypothetical protein YP_001547535.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001547536.1 functions in MreBCD complex in some organisms YP_001547537.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sth:STH649 two-component response regulator YP_001547538.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aba:Acid345_2380 major facilitator superfamily (MFS) transporter YP_001547539.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ckl:CKL_1020 transcriptional regulator YP_001547540.1 KEGG: har:HEAR0008 restriction endonuclease YP_001547542.1 KEGG: rca:Rcas_1891 hypothetical protein YP_001547543.1 PFAM: phospholipase/Carboxylesterase; KEGG: bca:BCE_2095 hypothetical protein YP_001547544.1 PFAM: metallophosphoesterase; KEGG: mma:MM_0751 serine/threonine protein phosphatase YP_001547545.1 PFAM: HEAT domain containing protein; KEGG: mma:MM_0490 phycocyanin alpha-subunit phycocyanobilin lyase YP_001547548.1 KEGG: dge:Dgeo_2485 aminoglycoside phosphotransferase YP_001547550.1 KEGG: ecs:pO157p35 similar to SwissProt accession number P19593; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); HNH endonuclease; Group II intron maturase-specific domain protein; SMART: HNH nuclease YP_001547552.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001547553.1 PFAM: Stage V sporulation protein S; KEGG: rrs:RoseRS_0329 stage V sporulation protein S YP_001547555.1 PFAM: protein kinase; SCP-like extracellular; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nca:Noca_0023 protein kinase YP_001547556.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: gka:GK2115 transcriptional regulator YP_001547557.1 PFAM: PfkB domain protein; KEGG: ath:AT5G51830 pfkB-type carbohydrate kinase YP_001547558.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ava:Ava_4752 major facilitator superfamily MFS_1 YP_001547560.1 KEGG: rrs:RoseRS_0209 hypothetical protein YP_001547561.1 TIGRFAM: conserved repeat domain; YD repeat protein; KEGG: det:DET1472 NHL/rhs/YD repeat protein YP_001547562.1 KEGG: rca:Rcas_3443 hypothetical protein YP_001547563.1 PFAM: metallophosphoesterase; KEGG: rca:Rcas_0329 metallophosphoesterase YP_001547564.1 PFAM: glycoside hydrolase 10; cellulose-binding family II; KEGG: tma:TM0070 endo-1,4-beta-xylanase B YP_001547565.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rrs:RoseRS_0118 CDP-alcohol phosphatidyltransferase YP_001547566.1 PFAM: glycosyl transferase group 1; KEGG: det:DET0978 glycosyl transferase, group 1 family protein YP_001547567.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rrs:RoseRS_0117 ParB-like partition protein YP_001547568.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rrs:RoseRS_0116 cobyrinic acid a,c-diamide synthase YP_001547569.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: rrs:RoseRS_3916 molybdenum cofactor synthesis domain YP_001547570.1 KEGG: gsu:GSU0025 tolB protein YP_001547571.1 KEGG: rfe:RF_0828 hypothetical protein YP_001547572.1 KEGG: mav:MAV_3198 hypothetical protein YP_001547573.1 PFAM: Ferritin Dps family protein; KEGG: nha:Nham_2872 ferritin and Dps YP_001547574.1 PFAM: glycosyl transferase 2; KEGG: rrs:RoseRS_4606 glycosyl transferase, family 2 YP_001547575.1 KEGG: fra:Francci3_0653 antigen 34 kDa family YP_001547577.1 PFAM: NUDIX hydrolase; KEGG: rca:Rcas_1616 NUDIX hydrolase YP_001547578.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rrs:RoseRS_1853 NAD-dependent epimerase/dehydratase YP_001547579.1 PFAM: Nucleotidyl transferase; KEGG: ade:Adeh_0159 mannose-1-phosphate guanylyltransferase (GDP) YP_001547580.1 PFAM: Nucleotidyl transferase; KEGG: rrs:RoseRS_1852 nucleotidyl transferase YP_001547581.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: det:DET0510 phosphoglucomutase/phosphomannomutase YP_001547582.1 PFAM: nitroreductase; KEGG: dra:DR_1968 nitroreductase YP_001547583.1 PFAM: CoA-binding domain protein; KEGG: rca:Rcas_3783 CoA-binding domain protein YP_001547584.1 KEGG: rrs:RoseRS_1561 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_001547585.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: rca:Rcas_3184 peptidase M61 domain protein YP_001547586.1 PFAM: helix-turn-helix domain protein; KEGG: rrs:RoseRS_0936 helix-turn-helix domain protein YP_001547587.1 KEGG: rrs:RoseRS_2617 hypothetical protein YP_001547588.1 KEGG: rca:Rcas_1801 protein of unknown function DUF407 YP_001547589.1 ATP-dependent carboxylate-amine ligase YP_001547590.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: rrs:RoseRS_3920 methionyl-tRNA formyltransferase YP_001547591.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: rca:Rcas_3931 single-stranded-DNA-specific exonuclease RecJ YP_001547592.1 KEGG: rca:Rcas_2056 hypothetical protein YP_001547593.1 PFAM: SAICAR synthetase; KEGG: rca:Rcas_1843 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_001547594.1 PFAM: regulatory protein TetR; KEGG: nfa:nfa44560 transcriptional regulator YP_001547595.1 PFAM: beta-lactamase domain protein; KEGG: bja:blr7890 beta-lactamase YP_001547596.1 PFAM: protein of unknown function DUF1304; KEGG: mms:mma_1696 hypothetical protein YP_001547597.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: rrs:RoseRS_0945 intradiol ring-cleavage dioxygenase YP_001547598.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rrs:RoseRS_4216 cobyrinic acid a,c-diamide synthase YP_001547600.1 KEGG: chy:CHY_2568 hypothetical protein YP_001547601.1 KEGG: rrs:RoseRS_1426 hypothetical protein YP_001547602.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: rca:Rcas_1193 cell divisionFtsK/SpoIIIE YP_001547603.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001547607.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: tko:TK0948 translation factor Sua5p homolog YP_001547608.1 KEGG: rca:Rcas_0296 hypothetical protein YP_001547609.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rrs:RoseRS_4519 cell envelope-related transcriptional attenuator YP_001547610.1 KEGG: rca:Rcas_3170 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001547611.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rca:Rcas_3169 protein serine/threonine phosphatase YP_001547612.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rrs:RoseRS_2297 anti-sigma regulatory factor, serine/threonine protein kinase YP_001547613.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001547614.1 KEGG: chu:CHU_3220 CHU large protein; uncharacterized YP_001547615.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pub:SAR11_0206 arginase YP_001547616.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_2460 PAS/PAC sensor protein YP_001547617.1 KEGG: sma:SAV4001 hypothetical protein YP_001547618.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: ppu:PP_1292 molybdenum cofactor biosynthesis protein C YP_001547619.1 PFAM: Patatin; KEGG: nca:Noca_2085 patatin YP_001547620.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sfu:Sfum_3028 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001547621.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001547622.1 PFAM: PspC domain protein; KEGG: rrs:RoseRS_2350 phage shock protein C, PspC YP_001547624.1 PFAM: amidohydrolase; adenylate cyclase; Amidohydrolase 3; KEGG: rca:Rcas_4181 amidohydrolase YP_001547626.1 PFAM: protein of unknown function DUF218; KEGG: rha:RHA1_ro01217 hypothetical protein YP_001547627.1 KEGG: sth:STH816 methylthioribose-1-phosphate isomerase; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001547628.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2337 hypothetical protein YP_001547629.1 KEGG: sth:STH2612 hypothetical protein YP_001547630.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: tte:TTE2319 prolyl-tRNA synthetase YP_001547632.1 KEGG: rca:Rcas_3521 hypothetical protein YP_001547633.1 KEGG: rba:RB3413 probable lipase/esterase YP_001547634.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sth:STH3289 two-component sensor histidine kinase YP_001547635.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: aba:Acid345_2477 UBA/ThiF-type NAD/FAD binding protein YP_001547636.1 PFAM: glycosyl transferase 4; KEGG: rrs:RoseRS_0580 glycosyl transferase, family 4 YP_001547638.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_0801 glycosyl transferase group 1 YP_001547639.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dra:DR_0827 hydrolase, CbbY/CbbZ/GpH/YieH family YP_001547640.1 KEGG: rrs:RoseRS_3343 LIM, zinc-binding protein YP_001547642.1 PFAM: protein of unknown function DUF92 transmembrane; KEGG: sth:STH1011 hypothetical protein YP_001547643.1 PFAM: peptidase M20; peptidase M42 family protein; KEGG: bsu:BG12317 similar to endo-1,4-beta-glucanase YP_001547644.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_4536 methyltransferase type 11 YP_001547645.1 KEGG: bxe:Bxe_A2724 fumarylacetoacetase (HmgB); TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969 YP_001547646.1 KEGG: aba:Acid345_2006 hypothetical protein YP_001547647.1 in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown YP_001547648.1 KEGG: rrs:RoseRS_4015 hypothetical protein YP_001547649.1 KEGG: rca:Rcas_0062 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein YP_001547651.1 PFAM: ATP-binding region ATPase domain protein; KEGG: msm:MSMEG_0106 sensory histidine kinase YP_001547652.1 PFAM: deoxynucleoside kinase; KEGG: rrs:RoseRS_0778 deoxynucleoside kinase YP_001547653.1 PFAM: protein of unknown function DUF161; KEGG: mta:Moth_0235 protein of unknown function DUF161 YP_001547654.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO5454 two-component system sensor kinase YP_001547656.1 KEGG: mcc:710488 similar to UPF0308 protein C9orf21 YP_001547657.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pdi:BDI_0950 conserved hypothetical protein BatC YP_001547658.1 PFAM: von Willebrand factor type A; KEGG: bfs:BF2500 aerotolerance-related membrane protein YP_001547659.1 TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: pdi:BDI_0948 conserved hypothetical protein BatA YP_001547660.1 KEGG: bth:BT_0908 hypothetical protein YP_001547661.1 PFAM: protein of unknown function DUF58; KEGG: mxa:MXAN_5665 hypothetical protein YP_001547662.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mxa:MXAN_5666 ATPase, AAA family YP_001547663.1 PFAM: blue (type 1) copper domain protein; KEGG: rca:Rcas_3112 blue (type 1) copper domain protein YP_001547664.1 TIGRFAM: phosphate binding protein; KEGG: rca:Rcas_4300 phosphate binding protein YP_001547665.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_3611 integral membrane sensor signal transduction histidine kinase YP_001547666.1 PFAM: response regulator receiver; KEGG: rca:Rcas_4302 response regulator receiver protein YP_001547667.1 KEGG: syf:Synpcc7942_0923 methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase 2 YP_001547668.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rca:Rcas_1122 histidine kinase YP_001547669.1 PFAM: Beta-ketoacyl synthase; KEGG: lpc:LPC_0121 3-oxoacyl-(acyl carrier protein) synthase YP_001547670.1 PFAM: protein of unknown function DUF72; KEGG: rca:Rcas_2244 protein of unknown function DUF72 YP_001547671.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001547672.1 PFAM: ribosomal protein S10; KEGG: rca:Rcas_4027 ribosomal protein S10 YP_001547673.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001547674.1 PFAM: ribosomal protein L4/L1e; KEGG: rrs:RoseRS_1184 ribosomal protein L4/L1e YP_001547675.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001547676.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001547677.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: rrs:RoseRS_1181 ribosomal protein S19 YP_001547678.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: rca:Rcas_4021 ribosomal protein L22 YP_001547679.1 KEGG: rca:Rcas_4020 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_001547680.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001547681.1 PFAM: ribosomal protein S17; KEGG: rca:Rcas_4017 ribosomal protein S17 YP_001547682.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: rrs:RoseRS_1175 ribosomal protein L14 YP_001547683.1 TIGRFAM: ribosomal protein L24; KEGG: rca:Rcas_4015 ribosomal protein L24 YP_001547684.1 PFAM: ribosomal protein L5; KEGG: rrs:RoseRS_1173 ribosomal protein L5 YP_001547685.1 PFAM: ribosomal protein S14; KEGG: swo:Swol_2320 ribosomal protein S14 YP_001547686.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001547687.1 PFAM: ribosomal protein L6; KEGG: gtn:GTNG_0120 ribosomal protein L6 YP_001547688.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: rrs:RoseRS_1169 ribosomal protein L18 YP_001547689.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: rrs:RoseRS_1168 ribosomal protein S5 YP_001547690.1 PFAM: ribosomal protein L30; KEGG: rca:Rcas_4008 ribosomal protein L30 YP_001547691.1 PFAM: ribosomal protein L15; KEGG: rca:Rcas_4007 ribosomal protein L15 YP_001547692.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: rrs:RoseRS_1165 preprotein translocase, SecY subunit YP_001547693.1 PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: rrs:RoseRS_1164 nucleoside-triphosphate--adenylate kinase YP_001547694.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001547695.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001547696.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001547697.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: rca:Rcas_4000 ribosomal protein S4 YP_001547698.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001547699.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001547700.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001547701.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001547702.1 PFAM: ribosomal protein S9; KEGG: rrs:RoseRS_1154 ribosomal protein S9 YP_001547703.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0391 ABC transporter ATP-binding protein YP_001547704.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_1229 xylose isomerase domain protein TIM barrel YP_001547705.1 PFAM: protein of unknown function DUF161; KEGG: cmi:CMM_0762 hypothetical protein YP_001547706.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rrs:RoseRS_2119 2-alkenal reductase YP_001547707.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rca:Rcas_3180 peptidase M20 YP_001547708.1 KEGG: rrs:RoseRS_0476 hypothetical protein YP_001547709.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Na-Ca exchanger/integrin-beta4; KEGG: rca:Rcas_2197 conserved repeat domain YP_001547710.1 KEGG: aav:Aave_1918 hypothetical protein YP_001547711.1 PFAM: Tail Collar domain protein; KEGG: sus:Acid_0150 phage tail collar domain protein YP_001547712.1 PFAM: Tail Collar domain protein; KEGG: mlo:mll4441 microcystin dependent protein MdpB YP_001547713.1 PFAM: Tail Collar domain protein; KEGG: mlo:mll4442 microcystin dependent protein MdpB YP_001547714.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sit:TM1040_3290 GCN5-related N-acetyltransferase YP_001547715.1 KEGG: pol:Bpro_1622 extracellular ligand-binding receptor YP_001547716.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001547717.1 Catalyzes the phosphorylation of UMP to UDP YP_001547718.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: chy:CHY_1786 elongation factor Ts YP_001547719.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001547720.1 PFAM: ribosomal protein S6; KEGG: rrs:RoseRS_3402 ribosomal protein S6 YP_001547721.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: rca:Rcas_1527 single-strand binding protein YP_001547722.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001547723.1 KEGG: rrs:RoseRS_3399 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001547724.1 KEGG: rrs:RoseRS_3398 hypothetical protein YP_001547725.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001547726.1 KEGG: rrs:RoseRS_4293 tetratricopeptide TPR_2 repeat protein YP_001547727.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sth:STH1647 ATP-dependent RNA helicase YP_001547728.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: tte:TTE0754 membrane-associated phospholipid phosphatase YP_001547729.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ava:Ava_0314 signal transduction histidine kinase (STHK) with CheB and CheR activity YP_001547731.1 PFAM: Nuclease A inhibitor family protein; KEGG: ava:Ava_B0337 nuclease A inhibitor-like YP_001547732.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rca:Rcas_0920 ATPase AAA-2 domain protein YP_001547733.1 PFAM: protein of unknown function UPF0079; KEGG: rrs:RoseRS_4357 protein of unknown function UPF0079 YP_001547734.1 PFAM: peptidase M22 glycoprotease; KEGG: rrs:RoseRS_4358 peptidase M22, glycoprotease YP_001547735.1 KEGG: bcl:ABC0288 topology modulation protein YP_001547736.1 PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_1781 FHA domain containing protein YP_001547737.1 PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_1780 FHA domain containing protein YP_001547738.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: rca:Rcas_2088 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_001547739.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001547740.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: rca:Rcas_2090 NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_001547741.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: rrs:RoseRS_2992 NADH dehydrogenase (quinone) YP_001547742.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rca:Rcas_2092 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_001547743.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: deh:cbdb_A879 proton-translocating NADH-quinone oxidoreductase, H subunit YP_001547744.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: rca:Rcas_2094 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_001547745.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rca:Rcas_2095 NADH-ubiquinone oxidoreductase chain 4L YP_001547746.1 KEGG: rrs:RoseRS_2997 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001547747.1 KEGG: rrs:RoseRS_2998 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001547748.1 KEGG: rca:Rcas_2098 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001547749.1 KEGG: rrs:RoseRS_3000 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001547750.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_1479 serine/threonine protein kinase YP_001547751.1 KEGG: mbn:Mboo_0664 hypothetical protein YP_001547752.1 KEGG: rrs:RoseRS_4212 hypothetical protein YP_001547753.1 PFAM: peptidase S45 penicillin amidase; KEGG: rca:Rcas_1469 peptidase S45 penicillin amidase YP_001547754.1 PFAM: PspC domain protein; KEGG: tma:TM1156 hypothetical protein YP_001547755.1 KEGG: ppu:PP_4306 hypothetical protein YP_001547756.1 PFAM: Polymorphic membrane protein Chlamydia; Na-Ca exchanger/integrin-beta4; KEGG: ter:Tery_1772 Na-Ca exchanger/integrin-beta4 YP_001547757.1 KEGG: ajs:Ajs_2220 helicase domain protein YP_001547758.1 PFAM: DNA repair protein RadC; KEGG: rrs:RoseRS_0767 DNA repair protein RadC YP_001547759.1 PFAM: zinc finger SWIM domain protein YP_001547761.1 KEGG: sde:Sde_0595 chromosome segregation ATPases-like YP_001547763.1 PFAM: K potassium transporter; KEGG: gsu:GSU2350 potassium uptake protein, Kup system YP_001547765.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: cjd:JJD26997_1030 putative cell division protein FtsK YP_001547769.1 KEGG: bth:BT_3857 hypothetical protein YP_001547770.1 PFAM: regulatory protein MerR; transcription activator effector binding; Transcription regulator MerR DNA binding; KEGG: ana:all0345 transcriptional regulator YP_001547771.1 KEGG: bsu:BG11957 carboxylesterase NA YP_001547773.1 PFAM: protein of unknown function DUF433; KEGG: ava:Ava_1741 protein of unknown function DUF433 YP_001547774.1 KEGG: gvi:gll2576 hypothetical protein YP_001547775.1 SMART: helix-turn-helix domain protein; KEGG: mta:Moth_1800 transcriptional regulator, Cro/CI family YP_001547779.1 PFAM: RimK domain protein ATP-grasp; KEGG: ana:all7011 hypothetical protein YP_001547780.1 KEGG: ana:all1363 hypothetical protein YP_001547781.1 PFAM: Integrase catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB YP_001547782.1 PFAM: Integrase catalytic region; KEGG: eli:ELI_14900 transposase orfB YP_001547785.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: bsu:BG10690 extracellular metalloprotease YP_001547786.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rxy:Rxyl_0884 cupin 2, conserved barrel YP_001547787.1 TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28 domain; KEGG: sen:SACE_4470 glycosyltransferase; possible macrolide glycosyltransferase YP_001547788.1 PFAM: transcriptional activator domain; SMART: AAA ATPase; KEGG: gvi:glr1376 hypothetical protein YP_001547789.1 KEGG: pth:PTH_2448 transposase and inactivated derivatives YP_001547790.1 KEGG: ana:alr7249 unknown protein YP_001547791.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: ana:alr8016 transposase YP_001547792.1 KEGG: swo:Swol_0155 hypothetical protein YP_001547793.1 KEGG: cbe:Cbei_0672 transposase, mutator type YP_001547794.1 KEGG: mxa:MXAN_6236 putative polysaccharide-degrading enzyme YP_001547795.1 KEGG: ccr:CC_0399 hypothetical protein YP_001547796.1 KEGG: mbb:BCG_3496c putative transposase YP_001547797.1 KEGG: gur:Gura_1849 hypothetical protein YP_001547798.1 KEGG: bsu:BG13178 hypothetical protein YP_001547799.1 PFAM: aminoglycoside phosphotransferase; KEGG: zmo:ZMO1381 hypothetical protein YP_001547800.1 PFAM: putative transposase; KEGG: mgm:Mmc1_2862 putative transposase YP_001547801.1 PFAM: integrase family protein; KEGG: gur:Gura_3109 phage integrase family protein YP_001547802.1 PFAM: cyclase family protein; KEGG: aba:Acid345_1511 putative cyclase YP_001547803.1 SMART: Lipid transport protein domain; KEGG: mxa:MXAN_0589 hypothetical protein YP_001547804.1 KEGG: rca:Rcas_4047 hypothetical protein YP_001547805.1 PFAM: integrase domain protein SAM domain protein; KEGG: gur:Gura_2872 phage integrase family protein YP_001547806.1 PFAM: Integrase catalytic region; KEGG: ecj:JW0260 predicted DNA-binding transcriptional regulator YP_001547808.1 KEGG: art:Arth_1960 hypothetical protein YP_001547809.1 KEGG: mva:Mvan_2054 hypothetical protein YP_001547811.1 PFAM: PilT protein domain protein; KEGG: ana:all8026 virulence-associated protein YP_001547812.1 KEGG: sde:Sde_2598 PAS/PAC sensor signal transduction histidine kinase YP_001547813.1 KEGG: lxx:Lxx22450 transposase, undefined YP_001547815.1 SMART: Integrin alpha beta-propellor repeat protein; KEGG: sde:Sde_2598 PAS/PAC sensor signal transduction histidine kinase YP_001547818.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_3119 peptidase C60, sortase A and B YP_001547821.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: cme:CMI070C similar to syntaxin binding protein Pfam: Toxin_5 EGF_2 Thia_YuaJ Voltage_CLC DAP10 Sec1 Herpes_BLRF2 PROSITE: EGF_1 EGF_2 ARG_RICH PRO_RICH SER_RICH THR_RICH YP_001547822.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: btl:BALH_3298 conserved repeat domain protein YP_001547823.1 KEGG: dge:Dgeo_1703 phage integrase YP_001547825.1 PFAM: Abortive infection protein; KEGG: cpf:CPF_1850 CAAX amino terminal protease family protein YP_001547826.1 PFAM: ATP-binding region ATPase domain protein; KEGG: dsy:DSY4619 hypothetical protein YP_001547828.1 PFAM: regulatory protein LuxR; KEGG: fjo:Fjoh_1791 two component transcriptional regulator, LuxR family YP_001547830.1 KEGG: rrs:RoseRS_2546 hypothetical protein YP_001547831.1 KEGG: rrs:RoseRS_0652 regulatory protein, DeoR YP_001547832.1 TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1; KEGG: rrs:RoseRS_1865 CRISPR-associated CXXC_CXXC protein Cst1 YP_001547833.1 TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family; KEGG: rca:Rcas_3299 CRISPR-associated autoregulator, DevR family YP_001547834.1 TIGRFAM: CRISPR-associated protein Cas5; KEGG: rca:Rcas_3300 CRISPR-associated protein Cas5 family YP_001547835.1 KEGG: rca:Rcas_3301 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001547836.1 KEGG: rrs:RoseRS_1869 hypothetical protein YP_001547837.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: rrs:RoseRS_1870 CRISPR-associated protein Cas1 YP_001547838.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: rrs:RoseRS_1871 CRISPR-associated protein Cas2 YP_001547839.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: rrs:RoseRS_1872 CRISPR-associated protein Cas4 YP_001547840.1 KEGG: rca:Rcas_4047 hypothetical protein YP_001547841.1 PFAM: regulatory protein LuxR; KEGG: lxx:Lxx18220 two-component system, regulatory protein YP_001547842.1 KEGG: plu:plu2048 hypothetical protein YP_001547843.1 PFAM: NMT1/THI5 like domain protein; KEGG: pna:Pnap_2656 multi-sensor signal transduction histidine kinase YP_001547844.1 KEGG: zmo:ZMO1951 demethylmenaquinone methyltransferase YP_001547845.1 KEGG: det:DET0215 polysaccharide biosynthesis protein YP_001547846.1 KEGG: tel:tlr0851 serine acetyltransferase YP_001547848.1 KEGG: mac:MA2176 hypothetical protein YP_001547849.1 PFAM: glycosyl transferase group 1; KEGG: mac:MA2175 membrane-bound galactosyl-transferase YP_001547850.1 PFAM: glycosyl transferase group 1; KEGG: mac:MA2173 phosphatidylinositol glycan-class A YP_001547851.1 PFAM: Glycosyltransferase 28 domain; KEGG: mac:MA2172 beta-1,4-galactosyltransferase YP_001547852.1 PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: mac:MA2171 capsular polysaccharide biosynthesis protein YP_001547853.1 PFAM: glycosyl transferase family 2; KEGG: mac:MA2170 glycosyltransferase YP_001547854.1 PFAM: glycosyl transferase family 2; KEGG: hma:rrnAC1019 dolichyl-phosphate beta-D-mannosyltransferase YP_001547855.1 KEGG: gvi:gll0250 unknown protein YP_001547856.1 SMART: Integrin alpha beta-propellor repeat protein; KEGG: sde:Sde_2598 PAS/PAC sensor signal transduction histidine kinase YP_001547858.1 KEGG: rrs:RoseRS_3009 transcriptional regulator-like protein YP_001547859.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mva:Mvan_4581 transposase IS116/IS110/IS902 family protein YP_001547860.1 KEGG: ajs:Ajs_4217 exonuclease, RNase T and DNA polymerase III YP_001547861.1 KEGG: sto:ST1780 hypothetical protein YP_001547862.1 KEGG: rrs:RoseRS_1205 hypothetical protein YP_001547863.1 KEGG: rca:Rcas_0069 hypothetical protein YP_001547865.1 KEGG: fra:Francci3_1693 type IV secretory pathway VirB4 components-like YP_001547868.1 KEGG: bta:789503 similar to mucin 5 YP_001547869.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001547871.1 KEGG: dre:100006405 hypothetical protein LOC100006405 YP_001547874.1 KEGG: dre:797993 hypothetical protein LOC797993 YP_001547875.1 PFAM: NLP/P60 protein; KEGG: tfu:Tfu_2283 similar to cell wall-associated hydrolase (invasion-associated proteins) YP_001547876.1 KEGG: dre:100006405 hypothetical protein LOC100006405 YP_001547878.1 PFAM: protein of unknown function DUF323; KEGG: ana:alr2711 hypothetical protein YP_001547879.1 PFAM: protein of unknown function DUF323; KEGG: rrs:RoseRS_2919 protein of unknown function DUF323 YP_001547880.1 PFAM: protein of unknown function DUF323; KEGG: rrs:RoseRS_2919 protein of unknown function DUF323 YP_001547881.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: ter:Tery_1841 peptidase C14, caspase catalytic subunit P20 YP_001547882.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001547884.1 PFAM: transposase IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family YP_001547886.1 PFAM: transposase mutator type; KEGG: sme:SMa0995 TRm5 transposase YP_001547888.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001547889.1 KEGG: rrs:RoseRS_1020 hypothetical protein YP_001547891.1 KEGG: pyo:PY02095 hypothetical protein YP_001547894.1 KEGG: tfu:Tfu_0599 hypothetical protein YP_001547895.1 KEGG: tfu:Tfu_0600 hypothetical protein YP_001547896.1 SMART: serine/threonine protein kinase; KEGG: tfu:Tfu_0601 serine/threonine protein kinase YP_001547897.1 PFAM: Resolvase domain; KEGG: rfe:RF_pd66 site-specific recombinases YP_001547898.1 SMART: Integrin alpha beta-propellor repeat protein; KEGG: sde:Sde_2598 PAS/PAC sensor signal transduction histidine kinase YP_001547901.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001547902.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: mba:Mbar_A3399 hypothetical protein YP_001547903.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ana:all3838 similar to kinesin light chain YP_001547904.1 KEGG: rrs:RoseRS_0641 tetratricopeptide TPR_2 repeat protein YP_001547905.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like YP_001547906.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: ava:Ava_3254 RNA-directed DNA polymerase (reverse transcriptase) YP_001547907.1 KEGG: rfr:Rfer_4215 hypothetical protein YP_001547908.1 KEGG: esa:ESA_02739 hypothetical protein YP_001547910.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2583 tetratricopeptide TPR_2 repeat protein YP_001547911.1 KEGG: rrs:RoseRS_2584 hypothetical protein YP_001547913.1 KEGG: gvi:gll2226 hypothetical protein YP_001547914.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0641 tetratricopeptide TPR_2 repeat protein YP_001547915.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0166 TPR repeat protein YP_001547916.1 KEGG: rba:RB4356 hypothetical protein YP_001547919.1 PFAM: protein of unknown function DUF323; KEGG: ava:Ava_3508 predicted signal transduction protein containing NACHT domain YP_001547920.1 PFAM: putative transposase; KEGG: gur:Gura_3110 putative transposase YP_001547921.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: gur:Gura_3109 phage integrase family protein YP_001547922.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001547926.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001547927.1 PFAM: transposase IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family YP_001547928.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001547931.1 PFAM: integrase family protein; KEGG: mag:amb4250 integrase YP_001547932.1 KEGG: rba:RB27 hypothetical protein YP_001547933.1 KEGG: mav:MAV_4144 hypothetical protein YP_001547934.1 PFAM: XisI protein; KEGG: ana:all3124 similar to XisI protein YP_001547935.1 PFAM: XisH protein; KEGG: ava:Ava_3826 FdxN element excision controlling factor protein YP_001547937.1 PFAM: PilT protein domain protein; KEGG: ava:Ava_2505 PilT protein-like YP_001547938.1 PFAM: helix-turn-helix domain protein; KEGG: gvi:glr1376 hypothetical protein YP_001547939.1 KEGG: aav:Aave_0804 hypothetical protein YP_001547940.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sth:STH487 alkaline proteinase YP_001547941.1 KEGG: reh:H16_B1269 hypothetical protein YP_001547942.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: nha:Nham_4376 protein of unknown function DUF125, transmembrane YP_001547943.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mma:MM_1461 cation-transporting ATPase YP_001547944.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: stp:Strop_1556 plasmid pRiA4b ORF-3 family protein YP_001547945.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: psp:PSPPH_B0057 resolvase, putative YP_001547946.1 KEGG: rrs:RoseRS_0166 hypothetical protein YP_001547947.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sen:SACE_0703 putative carboxypeptidase YP_001547948.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sen:SACE_3731 hypothetical protein YP_001547949.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mxa:MXAN_0560 penicillin-resistant dd-carboxypeptidase YP_001547951.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0135 anti-sigma-factor antagonist YP_001547952.1 PFAM: response regulator receiver; KEGG: sat:SYN_01078 response regulator receiver domain YP_001547953.1 KEGG: rca:Rcas_2373 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; GAF domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001547954.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: det:DET1063 DNA-binding response regulator, LuxR family YP_001547955.1 KEGG: det:DET1064 sensory box sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001547956.1 PFAM: NMT1/THI5 like domain protein; KEGG: aha:AHA_2666 GGDEF domain protein YP_001547958.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpe:RPE_2376 short-chain dehydrogenase/reductase SDR YP_001547959.1 KEGG: dra:DR_1763 hypothetical protein YP_001547960.1 PFAM: regulatory protein TetR; KEGG: sil:SPO1736 transcriptional regulator, TetR family YP_001547961.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_0929 transposase and inactivated derivative YP_001547962.1 KEGG: rrs:RoseRS_0641 tetratricopeptide TPR_2 repeat protein YP_001547964.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_0913 acyl-CoA dehydrogenase domain protein YP_001547965.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001547966.1 PFAM: helix-turn-helix domain protein YP_001547970.1 PFAM: protein of unknown function DUF262; KEGG: tcx:Tcr_0336 hypothetical protein YP_001547971.1 KEGG: bvu:BVU_3010 hypothetical protein YP_001547972.1 KEGG: stp:Strop_1996 hypothetical protein YP_001547973.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: rme:Rmet_0519 tyrosine recombinase XerD YP_001547974.1 PFAM: transposase Tn3 family protein; KEGG: ppd:Ppro_3695 transposase Tn3 family protein YP_001547975.1 KEGG: lxx:Lxx22450 transposase, undefined YP_001547977.1 KEGG: net:Neut_2533 transposase Tn3 family protein YP_001547980.1 KEGG: ana:alr8025 unknown protein YP_001547981.1 KEGG: rca:Rcas_3328 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases YP_001547982.1 PFAM: legume lectin beta domain; SMART: WD-40 repeat protein; KEGG: rba:RB2440 conserved hypothetical protein-putative glucosesorbosone dehydrogenase YP_001547983.1 KEGG: ana:all4644 hypothetical protein YP_001547987.1 KEGG: pla:Plav_3404 hypothetical protein YP_001547989.1 KEGG: cmi:pCM1_0005 hypothetical protein YP_001547993.1 KEGG: chu:CHU_1450 hypothetical protein YP_001547995.1 KEGG: fra:Francci3_1693 type IV secretory pathway VirB4 components-like YP_001547997.1 KEGG: oan:Oant_4498 RNA-directed DNA polymerase; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); HNH endonuclease; Group II intron maturase-specific domain protein; SMART: HNH nuclease YP_001548000.1 PFAM: peptidase domain protein; KEGG: bta:789571 similar to mucin 2 YP_001548001.1 KEGG: uma:UM02328.1 hypothetical protein YP_001548004.1 PFAM: peptidase M23B; KEGG: pde:Pden_4473 peptidase M23B YP_001548005.1 KEGG: hwa:HQ1193A probable cell surface glycoprotein YP_001548006.1 PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: rca:Rcas_0027 single-strand binding protein YP_001548007.1 PFAM: Integrase catalytic region; KEGG: eli:ELI_14900 transposase orfB YP_001548012.1 PFAM: cytochrome P450; KEGG: bha:BH0579 cytochrome P450 hydroxylase YP_001548013.1 KEGG: hch:HCH_03506 hypothetical protein YP_001548015.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: lic:LIC10830 putative lipoprotein YP_001548016.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: lic:LIC10830 putative lipoprotein YP_001548019.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: csc:Csac_1014 beta-lactamase domain protein YP_001548020.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0166 TPR repeat protein YP_001548021.1 PFAM: transposase mutator type; KEGG: afw:Anae109_1076 transposase mutator type YP_001548022.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0641 tetratricopeptide TPR_2 repeat protein YP_001548023.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001548024.1 KEGG: afw:Anae109_1225 heavy metal translocating P-type ATPase YP_001548026.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0641 tetratricopeptide TPR_2 repeat protein YP_001548028.1 KEGG: rrs:RoseRS_0738 hypothetical protein YP_001548029.1 KEGG: rrs:RoseRS_0737 hypothetical protein YP_001548030.1 PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: rrs:RoseRS_0736 N-6 DNA methylase YP_001548031.1 PFAM: restriction modification system DNA specificity domain; KEGG: rci:RCIX1320 type I restriction modification system, specificity subunit YP_001548032.1 PFAM: N-6 DNA methylase; KEGG: rrs:RoseRS_0734 N-6 DNA methylase YP_001548033.1 PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: rrs:RoseRS_0731 type III restriction enzyme, res subunit YP_001548038.1 KEGG: deb:DehaBAV1_0194 protein of unknown function DUF192 YP_001548039.1 KEGG: bch:Bcen2424_0200 plasmid related protein YP_001548041.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_3620 hypothetical protein YP_001548044.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0641 tetratricopeptide TPR_2 repeat protein YP_001548045.1 PFAM: peptidase M23B; KEGG: bte:BTH_II1834 LasA protease precursor YP_001548048.1 SMART: helix-turn-helix domain protein YP_001548050.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001548052.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: cjd:JJD26997_1030 putative cell division protein FtsK YP_001548056.1 PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_2177 hypothetical protein