-- dump date 20140619_115102 -- class Genbank::CDS -- table cds_note -- id note YP_003058400.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003058401.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: xau:Xaut_1835 16S rRNA methyltransferase GidB YP_003058402.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: ccs:CCNA_03869 chromosome partitioning protein ParA YP_003058403.1 KEGG: cak:Caul_5027 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003058404.1 TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; KEGG: pla:Plav_1278 DNA polymerase III subunit delta YP_003058405.1 KEGG: pzu:PHZ_c3518 predicted secreted (periplasmic) protein YP_003058406.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_003058407.1 KEGG: ccs:CCNA_03864 cytosolic protein YP_003058408.1 KEGG: pla:Plav_1282 porin YP_003058409.1 KEGG: ccs:CCNA_03863 hypothetical protein YP_003058410.1 PFAM: thiamine monophosphate synthase; KEGG: pzu:PHZ_c3514 thiamine monophosphate synthase YP_003058411.1 PFAM: alanine racemase domain protein; KEGG: pzu:PHZ_c3513 predicted enzyme with a TIM-barrel fold YP_003058412.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cak:Caul_5035 hypothetical protein YP_003058413.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cak:Caul_5036 two component transcriptional regulator YP_003058414.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: ccs:CCNA_03821 exodeoxyribonuclease III YP_003058415.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pzu:PHZ_c3507 outer membrane lipoprotein carrier protein LolA YP_003058416.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: atc:AGR_C_5003 cell division protein ftsK homolog YP_003058417.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pla:Plav_1303 ammonium transporter YP_003058418.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: rsq:Rsph17025_2897 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_003058419.1 PFAM: protein of unknown function DUF971; KEGG: rhi:NGR_c17100 hypothetical protein YP_003058420.1 PFAM: protein of unknown function DUF343; KEGG: azc:AZC_4232 hypothetical protein YP_003058421.1 PFAM: peptidase S16; SMART: peptidase S16 lon domain protein; KEGG: oca:OCAR_4347 peptidase S16, lon domain protein YP_003058422.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: pzu:PHZ_c0019 thioredoxin YP_003058423.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ccs:CCNA_00110 DNA-binding protein YP_003058424.1 KEGG: pzu:PHZ_c0017 hypothetical protein YP_003058425.1 PFAM: conserved hypothetical protein; KEGG: bbt:BBta_p0149 hypothetical protein YP_003058426.1 PFAM: SMC domain protein; KEGG: avi:Avi_3946 exonuclease protein YP_003058427.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: avi:Avi_3945 ATP-dependent dsDNA exonuclease protein YP_003058428.1 KEGG: atc:AGR_C_4629 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM protein YP_003058429.1 PFAM: tRNA synthetase class II (D K and N); KEGG: cak:Caul_0762 lysine--tRNA ligase YP_003058430.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_003058431.1 SMART: prolyl 4-hydroxylase subunit alpha; KEGG: ccs:CCNA_02573 proline hydroxylase YP_003058432.1 KEGG: rpt:Rpal_0585 hypothetical protein YP_003058433.1 PFAM: OsmC family protein; KEGG: xau:Xaut_0062 OsmC family protein YP_003058434.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: sil:SPO0979 low molecular weight phosphotyrosine protein phosphatase YP_003058435.1 PFAM: MGS domain protein; KEGG: hap:HAPS_1664 cytosine deaminase YP_003058436.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: ccs:CCNA_01495 deoxyribodipyrimidine photolyase YP_003058437.1 KEGG: lch:Lcho_0447 hypothetical protein YP_003058438.1 PFAM: protein of unknown function DUF28; KEGG: pzu:PHZ_c3068 hypothetical protein YP_003058439.1 PFAM: silent information regulator protein Sir2; KEGG: vfm:VFMJ11_1396 NAD-dependent deacetylase YP_003058441.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: lch:Lcho_1330 peptidase S8 and S53 subtilisin kexin sedolisin YP_003058444.1 PFAM: peptidase M23; KEGG: ccs:CCNA_02382 membrane peptidase, M23 family YP_003058445.1 KEGG: dar:Daro_1923 hypothetical protein YP_003058446.1 KEGG: pzu:PHZ_c2957 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase YP_003058447.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pzu:PHZ_c2956 riboflavin biosynthesis protein RibD YP_003058448.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_4754 cobyrinic acid ac-diamide synthase YP_003058449.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_003058450.1 KEGG: sdn:Sden_0777 hypothetical protein YP_003058451.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_003058452.1 KEGG: rle:RL3417 transmembrane protein YP_003058453.1 KEGG: sil:SPO3144 hypothetical protein YP_003058455.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: bbt:BBta_0215 50S ribosomal protein L20 YP_003058456.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pla:Plav_0218 ribosomal protein L35 YP_003058458.1 PFAM: protein of unknown function DUF985; KEGG: mpo:Mpop_5050 protein of unknown function DUF985 YP_003058459.1 KEGG: csa:Csal_2942 hypothetical protein YP_003058460.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_003058461.1 PFAM: glycosyl transferase family 9; KEGG: pzu:PHZ_c2971 heptosyltransferase family protein YP_003058462.1 PFAM: glycosyl transferase group 1; KEGG: ccs:CCNA_01104 glycosyltransferase YP_003058463.1 PFAM: alpha/beta hydrolase fold; KEGG: ccs:CCNA_01105 alpha/beta hydrolase family protein YP_003058464.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sit:TM1040_2932 NAD-dependent epimerase/dehydratase YP_003058465.1 KEGG: pla:Plav_0201 tetratricopeptide domain-containing protein YP_003058466.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: scl:sce7544 hypothetical protein YP_003058467.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_003058468.1 KEGG: cak:Caul_4871 hypothetical protein YP_003058469.1 PFAM: HemY domain protein; KEGG: pzu:PHZ_c3402 hypothetical protein YP_003058470.1 KEGG: hypothetical protein YP_003058471.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: ccs:CCNA_00071 uroporphyrinogen-III synthase YP_003058472.1 KEGG: nwi:Nwi_0471 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase YP_003058473.1 KEGG: ccs:CCNA_00069 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_003058474.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; ketopantoate reductase; KEGG: pzu:PHZ_c3407 glycerol-3-phosphate dehydrogenase (NAD+) YP_003058475.1 PFAM: YCII-related; KEGG: bcs:BCAN_A1933 YciI-like protein YP_003058476.1 PFAM: paraquat-inducible protein A; KEGG: ret:RHE_CH03331 hypothetical protein YP_003058477.1 KEGG: bgl:bglu_1g05250 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003058478.1 KEGG: pzu:PHZ_c3486 hypothetical protein YP_003058479.1 PFAM: protein of unknown function DUF350; KEGG: cak:Caul_0188 hypothetical protein YP_003058481.1 TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: pzu:PHZ_c3488 predicted Fe-S-cluster redox enzyme YP_003058483.1 KEGG: pla:Plav_1381 hypothetical protein YP_003058484.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: pzu:PHZ_c0147 hypothetical protein YP_003058485.1 PFAM: protein of unknown function UPF0005; KEGG: ccs:CCNA_03778 integral membrane protein YP_003058486.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pla:Plav_1397 ABC transporter YP_003058487.1 KEGG: pla:Plav_1398 cytochrome C biogenesis protein CcmB YP_003058488.1 KEGG: pla:Plav_1399 ABC-type uncharacterized transport system involved in gliding motility auxiliary component protein YP_003058489.1 KEGG: mca:MCA1564 hypothetical protein YP_003058490.1 PFAM: protein of unknown function DUF1223; KEGG: mlo:mll4533 hypothetical protein YP_003058491.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: pzu:PHZ_c0141 aconitate hydratase 1 YP_003058492.1 KEGG: rpa:RPA0203 cytochrome C biogenesis protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter; SMART: ATPase AAA YP_003058493.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pzu:PHZ_c0139 heme exporter protein CcmB YP_003058494.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: msl:Msil_3505 heme exporter protein CcmC YP_003058496.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: elf:LF82_0279 thiol:disulfide interchange protein DsbE YP_003058497.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ccs:CCNA_03791 MarR family transcriptional regulator YP_003058498.1 PFAM: Intracellular septation protein A; KEGG: pla:Plav_1412 intracellular septation protein A YP_003058499.1 PFAM: polysaccharide biosynthesis protein; KEGG: ccr:CC_2426 polysaccharide biosynthesis protein YP_003058500.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: reh:H16_B1954 hypothetical membrane protein YP_003058501.1 KEGG: xau:Xaut_0413 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003058502.1 KEGG: pla:Plav_1414 MiaB-like tRNA modifying enzyme; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: radical SAM protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_003058503.1 KEGG: sml:Smlt0519 transmembrane protein YP_003058504.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: scl:sce1405 hypothetical protein YP_003058505.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mlo:mlr8182 transcriptional regulator YP_003058507.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_003058508.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rsh:Rsph17029_3855 regulatory protein, ArsR YP_003058509.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: cak:Caul_4870 prolyl oligopeptidase YP_003058510.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: hch:HCH_03548 thiol-disulfide isomerase and thioredoxins YP_003058512.1 PFAM: cytochrome C class I; KEGG: sme:SMc01981 cytochrome C transmembrane protein YP_003058513.1 KEGG: pzu:PHZ_c1900 helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; SMART: helicase; DEAD-like helicase YP_003058514.1 PFAM: metallophosphoesterase; KEGG: scl:sce2733 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YP_003058515.1 PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_0743 sodium:dicarboxylate symporter YP_003058516.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: atc:AGR_C_4353 hypothetical protein YP_003058518.1 PFAM: cytochrome P450; KEGG: bja:blr3832 cytochrome P450 YP_003058519.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization YP_003058522.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: rpb:RPB_3028 esterase/lipase/thioesterase YP_003058523.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ilo:IL2154 outer membrane protein YP_003058524.1 PFAM: protein of unknown function UPF0061; KEGG: cak:Caul_4337 hypothetical protein YP_003058525.1 KEGG: pzu:PHZ_c1163 sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: response regulator receiver; PAC repeat-containing protein; PAS domain containing protein YP_003058526.1 PFAM: oxidoreductase FAD-binding domain protein; KEGG: atc:AGR_C_2692 ferredoxin--NADP+ reductase YP_003058527.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: pzu:PHZ_c1926 efflux system protein YP_003058528.1 PFAM: acriflavin resistance protein; KEGG: pla:Plav_0170 acriflavin resistance protein YP_003058529.1 KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A YP_003058530.1 PFAM: glycosyl transferase family 39; KEGG: pzu:PHZ_c0322 4-amino-4-deoxy-L-arabinose transferase YP_003058531.1 KEGG: ilo:IL0583 OmpA family Oar-like outer membrane protein protein YP_003058532.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cak:Caul_4697 agmatine deiminase YP_003058533.1 TIGRFAM: N-carbamoylputrescine amidase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pzu:PHZ_c0325 hydrolase, carbon-nitrogen family YP_003058534.1 KEGG: sde:Sde_1613 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003058535.1 KEGG: AGAP008244-PA YP_003058536.1 KEGG: ccs:CCNA_00922 ClpB protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase AAA; Clp domain protein; SMART: ATPase AAA YP_003058537.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: bra:BRADO0758 methyl-accepting chemotaxis protein YP_003058538.1 PFAM: acyltransferase 3; KEGG: cak:Caul_2329 acyltransferase 3 YP_003058539.1 PFAM: peptidase M23; KEGG: pla:Plav_1754 peptidase M23B YP_003058540.1 KEGG: pla:Plav_2169 hypothetical protein YP_003058541.1 KEGG: pla:Plav_2170 hypothetical protein YP_003058542.1 PFAM: conserved hypothetical protein; KEGG: ppr:PBPRB0969 hypothetical protein YP_003058543.1 KEGG: rpc:RPC_4248 hypothetical protein YP_003058544.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: bja:bll0393 two-component hybrid sensor and regulator YP_003058545.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: nha:Nham_3375 CheW protein YP_003058546.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rpd:RPD_3676 response regulator receiver YP_003058547.1 KEGG: rpa:RPA1630 chemotaxis-specific methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver YP_003058548.1 KEGG: bra:BRADO7000 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003058549.1 TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: cak:Caul_4741 ATP synthase F1 subunit delta YP_003058550.1 KEGG: pzu:PHZ_c0235 ATP synthase F1 alpha subunit; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein YP_003058551.1 TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; KEGG: rhi:NGR_c31120 ATP synthase F1 subunit gamma YP_003058552.1 KEGG: oan:Oant_1105 ATP synthase F1 beta subunit; TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA YP_003058553.1 KEGG: mno:Mnod_2886 hypothetical protein YP_003058554.1 TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+transporting two-sector ATPase delta/subunit epsilon; KEGG: pla:Plav_1466 ATP synthase F1 subunit epsilon YP_003058555.1 KEGG: cak:Caul_4728 arylesterase-related protein YP_003058556.1 PFAM: NUDIX hydrolase; KEGG: mpo:Mpop_2241 NUDIX hydrolase YP_003058557.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: pzu:PHZ_c0243 hypothetical protein YP_003058558.1 KEGG: pzu:PHZ_c0244 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003058559.1 PFAM: peptidase M23; KEGG: pla:Plav_1473 peptidase M23B YP_003058560.1 PFAM: protein of unknown function DUF163; KEGG: rsq:Rsph17025_0155 hypothetical protein YP_003058561.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: ccs:CCNA_03545 iojap protein family YP_003058562.1 KEGG: pzu:PHZ_c0251 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003058563.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_003058564.1 KEGG: pzu:PHZ_c0253 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein YP_003058565.1 TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; KEGG: ccs:CCNA_00317 GTP-binding protein CgtA YP_003058566.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_00319 acetyltransferase, GNAT family YP_003058567.1 TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: avi:Avi_4287 50S ribosomal protein L27 YP_003058568.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: sit:TM1040_1200 50S ribosomal protein L21/unknown domain fusion protein YP_003058569.1 PFAM: peptidoglycan-binding protein; KEGG: abo:ABO_1992 hypothetical protein YP_003058570.1 PFAM: allophanate hydrolase subunit 2; SMART: allophanate hydrolase subunit 2; KEGG: spe:Spro_1256 UreA amidolyase related protein YP_003058571.1 PFAM: allophanate hydrolase subunit 1; SMART: allophanate hydrolase subunit 1; KEGG: dat:HRM2_46540 allophanate hydrolase subunit 1 YP_003058572.1 PFAM: LamB/YcsF family protein; KEGG: hsm:HSM_1920 LamB/YcsF family protein YP_003058573.1 PFAM: natural resistance-associated macrophage protein; KEGG: pat:Patl_3815 natural resistance-associated macrophage protein YP_003058574.1 KEGG: pat:Patl_2350 hypothetical protein YP_003058575.1 KEGG: pla:Plav_0105 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; 5'-3' exonuclease YP_003058576.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: maq:Maqu_2944 NAD-dependent epimerase/dehydratase YP_003058577.1 PFAM: aldehyde dehydrogenase; KEGG: ilo:IL0072 NAD-dependent aldehyde dehydrogenase YP_003058579.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpe:RPE_1372 3-demethylubiquinone-9 3-methyltransferase YP_003058580.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: ara:Arad_3303 hypothetical protein YP_003058581.1 PFAM: regulatory protein TetR; KEGG: smd:Smed_2433 TetR family transcriptional regulator YP_003058582.1 PFAM: arsenate reductase; KEGG: fph:Fphi_1746 arsenate reductase YP_003058583.1 TIGRFAM: arsenic resistance protein; PFAM: Bile acid:sodium symporter; KEGG: pat:Patl_3395 bile acid:sodium symporter YP_003058585.1 KEGG: sit:TM1040_0787 hypothetical protein YP_003058586.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pla:Plav_0111 two component transcriptional regulator YP_003058587.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: pzu:PHZ_c0084 sensor histidine kinase YP_003058588.1 PFAM: PTS system fructose subfamily IIA component; KEGG: oan:Oant_0825 PTS system fructose subfamily IIA component YP_003058589.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: cak:Caul_4626 phosphotransferase system, phosphocarrier protein HPr YP_003058591.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_003058593.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pla:Plav_0118 PAS/PAC sensor signal transduction histidine kinase YP_003058594.1 KEGG: cak:Caul_2882 regulatory protein FlaEY YP_003058595.1 KEGG: mno:Mnod_3609 hypothetical protein YP_003058596.1 KEGG: pag:PLES_39411 hypothetical protein YP_003058597.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: mch:Mchl_3980 N-acylneuraminate-9-phosphate synthase YP_003058598.1 PFAM: dTDP-4-dehydrorhamnose reductase; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: ppd:Ppro_2097 dTDP-4-dehydrorhamnose reductase YP_003058599.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: har:HEAR1123 bifunctionnal protein: glutamate-1-semialdehyde 2,1-aminomutase, 3-deoxy-manno-octulosonate cytidylyltransferase YP_003058600.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: abu:Abu_2243 UDP GlcNAc dehydratase/reductase PseB YP_003058601.1 KEGG: avi:Avi_1408 hypothetical protein YP_003058602.1 PFAM: transcriptional regulator PadR family protein; KEGG: avi:Avi_1409 transcriptional regulator protein YP_003058603.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rle:RL2400 MarC family transmembrane protein YP_003058604.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ccs:CCNA_03722 glutamate synthase (NADPH) large chain YP_003058605.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_003058606.1 PFAM: bacitracin resistance protein BacA; KEGG: sil:SPO3771 undecaprenol kinase YP_003058607.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: similar to predicted protein YP_003058608.1 PFAM: glycoside hydrolase; KEGG: xcv:XCV1823 glucan 1,4-beta-glucosidase precursor YP_003058609.1 PFAM: response regulator receiver; KEGG: ppd:Ppro_2364 response regulator receiver modulated CheW protein YP_003058610.1 PFAM: EAL domain protein; response regulator receiver; SMART: EAL domain protein; response regulator receiver; KEGG: net:Neut_1019 response regulator receiver modulated diguanylate phosphodiesterase YP_003058611.1 KEGG: mex:Mext_3511 hypothetical protein YP_003058612.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: met:M446_5358 multi-sensor hybrid histidine kinase YP_003058613.1 KEGG: mes:Meso_3041 OpgC protein YP_003058614.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_003058616.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_003058617.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ccs:CCNA_03161 transcriptional regulator XylR YP_003058618.1 PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; KEGG: pla:Plav_0196 3'-5' exonuclease YP_003058619.1 PFAM: protein of unknown function DUF1239; KEGG: pzu:PHZ_c0172 hypothetical protein YP_003058620.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: pzu:PHZ_c0173 hypothetical protein YP_003058621.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cak:Caul_4957 ABC transporter YP_003058622.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_003058623.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pzu:PHZ_c0180 ribosomal subunit interface protein YP_003058624.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ara:Arad_0616 PTS IIA-like nitrogen-regulatory protein PtsN YP_003058625.1 KEGG: pla:Plav_1582 chorismate mutase YP_003058626.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; aminotransferase class V; KEGG: mrd:Mrad2831_1875 histidinol-phosphate aminotransferase YP_003058627.1 PFAM: prephenate dehydrogenase; KEGG: pla:Plav_1584 prephenate dehydrogenase YP_003058628.1 KEGG: pla:Plav_1585 hypothetical protein YP_003058629.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: bbk:BARBAKC583_0043 acyltransferase family protein YP_003058630.1 PFAM: protein of unknown function DUF218; KEGG: cak:Caul_3219 hypothetical protein YP_003058631.1 KEGG: ccs:CCNA_02300 cell division protein FtsX YP_003058632.1 KEGG: pla:Plav_1595 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA YP_003058633.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: ccs:CCNA_02298 MJ0042 family finger-like domain protein YP_003058634.1 PFAM: phosphoribosyltransferase; KEGG: ccs:CCNA_02297 hypoxanthine-guanine phosphoribosyltransferase YP_003058635.1 KEGG: xau:Xaut_1882 hypothetical protein YP_003058636.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pla:Plav_1600 diaminopimelate decarboxylase YP_003058638.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: rsp:RSP_0726 argininosuccinate lyase YP_003058639.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: cak:Caul_3210 redoxin domain-containing protein YP_003058640.1 KEGG: avi:Avi_1104 hypothetical protein YP_003058641.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: pla:Plav_1606 3-hydroxybutyryl-CoA dehydrogenase YP_003058642.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: amc:MADE_01683 hypothetical protein YP_003058643.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; KEGG: pzu:PHZ_c3151 electron transfer flavoprotein alpha-subunit YP_003058644.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: bra:BRADO6492 electron transfer flavoprotein subunit beta YP_003058645.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: ret:RHE_CH03790 hypothetical protein YP_003058646.1 KEGG: ccs:CCNA_00767 hypothetical protein YP_003058647.1 PFAM: glucose sorbosone dehydrogenase; cytochrome C class I; KEGG: mfa:Mfla_0530 glucose sorbosone dehydrogenase YP_003058648.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: ccs:CCNA_03184 acyl-CoA dehydrogenase YP_003058650.1 PFAM: integral membrane protein TerC; KEGG: ccs:CCNA_00352 integral membrane protein YP_003058651.1 KEGG: hypothetical protein YP_003058652.1 PFAM: protein of unknown function DUF885; KEGG: swp:swp_3680 hypothetical protein YP_003058653.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_003058654.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: pla:Plav_2574 flagellar biosynthesis protein FliR YP_003058655.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: pla:Plav_2575 flagellar biosynthetic protein FlhB YP_003058656.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; KEGG: pla:Plav_2576 multi-sensor hybrid histidine kinase YP_003058657.1 KEGG: atc:AGR_C_3441 RecA protein (recombinase A); TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: ATPase AAA YP_003058658.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003058659.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: pzu:PHZ_c2300 ribosomal small subunit pseudouridine synthase A YP_003058660.1 PFAM: methyltransferase small; KEGG: pzu:PHZ_c2301 ribosomal RNA small subunit methyltransferase C YP_003058661.1 PFAM: protein of unknown function DUF1486; KEGG: sml:Smlt3120 hypothetical protein YP_003058662.1 KEGG: ccs:CCNA_00253 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding YP_003058663.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA4175 hypothetical protein YP_003058664.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppr:PBPRA3509 RarD YP_003058665.1 PFAM: beta-lactamase; KEGG: cak:Caul_4621 beta-lactamase YP_003058666.1 PFAM: phosphomethylpyrimidine kinase type-1; KEGG: ccs:CCNA_00256 pyridoxine kinase YP_003058667.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_00939 histone acetyltransferase HPA2-like acetyltransferase YP_003058668.1 PFAM: HpcH/HpaI aldolase; KEGG: pla:Plav_1428 citryl-CoA lyase YP_003058669.1 PFAM: arsenate reductase; KEGG: vcj:VCD_002210 arsenate reductase YP_003058670.1 PFAM: MaoC domain protein dehydratase; KEGG: ccs:CCNA_03771 dehydrogenase with MaoC-like domain/dehydrogenase with MaoC-like domain YP_003058672.1 KEGG: nwi:Nwi_2576 hypothetical protein YP_003058673.1 PFAM: thymidine kinase; KEGG: mlo:mlr2747 thymidine kinase YP_003058675.1 KEGG: hypothetical protein YP_003058676.1 PFAM: VanZ family protein; KEGG: ccs:CCNA_03321 hypothetical protein YP_003058678.1 KEGG: msl:Msil_0816 hypothetical protein YP_003058679.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: sde:Sde_1334 oxidoreductase YP_003058680.1 KEGG: ara:Arad_7756 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; MHYT domain protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003058681.1 KEGG: cak:Caul_1472 PepSY-associated TM helix domain-containing protein YP_003058682.1 KEGG: pat:Patl_0312 hypothetical protein YP_003058683.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swp:swp_0926 TonB-dependent siderophore receptor YP_003058684.1 KEGG: psa:PST_2460 predicted membrane protein YP_003058685.1 KEGG: cak:Caul_3755 TonB-dependent receptor plug YP_003058686.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pzu:PHZ_c3140 phenylpropionate dioxygenase YP_003058687.1 TIGRFAM: crotonyl-CoA reductase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES; KEGG: cak:Caul_1067 crotonyl-CoA reductase YP_003058688.1 KEGG: ccs:CCNA_02913 hypothetical protein YP_003058689.1 KEGG: pnu:Pnuc_1322 hypothetical protein YP_003058690.1 KEGG: ccs:CCNA_03177 methylmalonyl-CoA mutase MeaA-like protein; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_003058691.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rlt:Rleg2_0281 protein of unknown function DUF6 transmembrane YP_003058692.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: cak:Caul_3201 HNH endonuclease YP_003058693.1 PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: hch:HCH_01117 transcriptional regulator YP_003058694.1 KEGG: bcj:BCAM1256 hypothetical protein YP_003058695.1 PFAM: Ubiquinone biosynthesis protein COQ7; KEGG: ccs:CCNA_02280 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_003058696.1 KEGG: cak:Caul_3197 hypothetical protein YP_003058697.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: mes:Meso_1827 exopolysaccharide synthesis, ExoD YP_003058699.1 PFAM: glutamine amidotransferase class-I; KEGG: ccs:CCNA_00414 GMP synthase (glutamine-hydrolyzing) YP_003058700.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: cak:Caul_4840 succinate dehydrogenase, cytochrome b556 subunit YP_003058701.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: oan:Oant_0952 succinate dehydrogenase hydrophobic membrane anchor YP_003058702.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_003058703.1 KEGG: sml:Smlt4613 hypothetical protein YP_003058704.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_003058705.1 KEGG: mlo:mll6900 hypothetical protein YP_003058706.1 PFAM: protein of unknown function DUF185; KEGG: ccs:CCNA_00524 conserved cytosolic protein YP_003058707.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: azc:AZC_3982 prolipoprotein diacylglyceryl transferase YP_003058708.1 PFAM: protein of unknown function DUF526; KEGG: pzu:PHZ_c2857 hypothetical protein YP_003058709.1 PFAM: protein of unknown function DUF1790; KEGG: xau:Xaut_2546 hypothetical protein YP_003058710.1 KEGG: mno:Mnod_1362 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003058711.1 KEGG: mrd:Mrad2831_4945 TetR family transcriptional regulator YP_003058712.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ccs:CCNA_03027 two-component sensor histidine kinase YP_003058713.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: oca:OCAR_7202 protein PetR YP_003058714.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ccs:CCNA_03025 MarR family transcriptional regulator YP_003058715.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_003058716.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: sit:TM1040_2522 K+-dependent Na+/Ca+ exchanger related-protein YP_003058717.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_00422 3-oxoacyl-(acyl-carrier protein) reductase YP_003058718.1 PFAM: dihydroneopterin aldolase; KEGG: pzu:PHZ_c2849 dihydroneopterin aldolase YP_003058719.1 PFAM: phosphoglycerate mutase; KEGG: bra:BRADO5068 phosphoglycerate mutase family protein YP_003058720.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: azc:AZC_0349 glutamate synthase YP_003058721.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: sde:Sde_2432 bacterioferritin YP_003058722.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: scl:sce1647 bacterioferritin-associated ferredoxin YP_003058723.1 KEGG: gbm:Gbem_1552 Ig family protein YP_003058724.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_003058725.1 SMART: helix-turn-helix domain protein; KEGG: smd:Smed_1673 phage repressor YP_003058726.1 PFAM: peptidase S24 and S26 domain protein; KEGG: pla:Plav_0435 phage repressor YP_003058728.1 KEGG: ypb:YPTS_4102 SinR-like protein YP_003058730.1 PFAM: protein of unknown function DUF81; KEGG: pzu:PHZ_c1080 hypothetical protein YP_003058733.1 PFAM: peptidase M13; peptidase M13 neprilysin; KEGG: pha:PSHAa2745 peptidase, M13 (lipoprotein) YP_003058734.1 PFAM: acriflavin resistance protein; KEGG: slo:Shew_0765 acriflavin resistance protein YP_003058735.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: pca:Pcar_0668 Acr family membrane-fusion protein YP_003058736.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: nmu:Nmul_A1840 RND efflux system, outer membrane lipoprotein, NodT YP_003058737.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cak:Caul_4551 histidine kinase YP_003058738.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cak:Caul_4547 phosphate uptake regulator, PhoU YP_003058739.1 KEGG: ccs:CCNA_00296 phosphate regulon response regulator PhoB; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver YP_003058740.1 PFAM: GcrA cell cycle regulator; KEGG: pla:Plav_0400 GcrA cell cycle regulator YP_003058741.1 PFAM: ABC transporter; KEGG: ccs:CCNA_02327 ABC transporter permease YP_003058742.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: xau:Xaut_1218 acetylornithine and succinylornithine aminotransferase YP_003058743.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_003058744.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: ccs:CCNA_03740 cysteine synthase YP_003058745.1 PFAM: Hsp33 protein; KEGG: ccs:CCNA_02324 heat shock protein 33 HSP33 YP_003058746.1 PFAM: cation transporter; KEGG: pub:SAR11_0211 potassium uptake protein YP_003058747.1 protein associated with Co2+ and Mg2+ efflux YP_003058748.1 KEGG: oan:Oant_0398 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003058749.1 Catalyzes the deamination of dCTP to form dUTP YP_003058750.1 KEGG: xop:PXO_02796 hypothetical protein YP_003058752.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: swp:swp_0180 transcriptional regulator, Cro/CI family YP_003058753.1 PFAM: radical SAM protein; KEGG: pla:Plav_0414 radical SAM domain-containing protein YP_003058754.1 PFAM: regulatory protein MarR; KEGG: nha:Nham_0658 MarR family transcriptional regulator YP_003058755.1 PFAM: sporulation domain protein; KEGG: pzu:PHZ_c1606 rare lipoprotein A YP_003058756.1 KEGG: cak:Caul_1350 GAF domain-containing protein YP_003058757.1 KEGG: aci:ACIAD3280 hypothetical protein YP_003058758.1 PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: cak:Caul_3418 peptidase S9B dipeptidylpeptidase IV subunit YP_003058759.1 KEGG: swd:Swoo_3231 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003058762.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_003058763.1 PFAM: aldose 1-epimerase; KEGG: rle:pRL90061 aldose epimerase family protein YP_003058765.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: xau:Xaut_4566 sodium/hydrogen exchanger YP_003058766.1 PFAM: glutathione S-transferase domain; KEGG: bav:BAV2143 glutathione transferase YP_003058767.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_0168 two component, sigma54 specific, Fis family transcriptional regulator YP_003058768.1 PFAM: toluene tolerance family protein; KEGG: ccs:CCNA_03807 organic solvent resistance transporter Ttg2D protein YP_003058769.1 PFAM: VacJ family lipoprotein; KEGG: pla:Plav_2399 VacJ family lipoprotein YP_003058770.1 PFAM: methyltransferase type 11; regulatory protein ArsR; methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: mrd:Mrad2831_2125 ArsR family transcriptional regulator YP_003058771.1 KEGG: bid:Bind_1122 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_003058772.1 PFAM: homocysteine S-methyltransferase; KEGG: azc:AZC_4341 B12-dependent methionine synthase YP_003058774.1 KEGG: rec:RHECIAT_CH0003056 5-methyltetrahydrofolate--homocysteine S-methyltransferase protein; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region YP_003058777.1 KEGG: swd:Swoo_4831 hypothetical protein YP_003058778.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: cak:Caul_2865 antibiotic biosynthesis monooxygenase YP_003058779.1 PFAM: ion transporter; KEGG: pla:Plav_2044 ion transporter YP_003058780.1 PFAM: protein of unknown function DUF1332; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: pla:Plav_2408 heat shock protein DnaJ domain-containing protein YP_003058782.1 KEGG: cak:Caul_3680 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_003058783.1 PFAM: protein of unknown function UPF0040; KEGG: ccs:CCNA_02646 cell division protein MraZ YP_003058784.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: ccs:CCNA_02645 S-adenosyl-methyltransferase MraW YP_003058785.1 TIGRFAM: cell division protein FtsL; KEGG: pzu:PHZ_c2330 hypothetical protein YP_003058786.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: mes:Meso_2013 penicillin-binding protein, transpeptidase YP_003058787.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: pla:Plav_2416 UDP-N-acetylmuramyl-tripeptide synthetase YP_003058788.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: cak:Caul_3671 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_003058789.1 KEGG: ret:RHE_CH02850 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4 YP_003058790.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_003058791.1 PFAM: cell cycle protein; KEGG: pzu:PHZ_c2324 cell division protein YP_003058792.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_003058793.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_003058794.1 KEGG: ccs:CCNA_00329 ribosomal-protein-alanine acetyltransferase YP_003058795.1 KEGG: ccs:CCNA_03099 hypothetical protein YP_003058796.1 KEGG: vpa:VP2967 hypothetical protein YP_003058797.1 PFAM: carboxymuconolactone decarboxylase; KEGG: pin:Ping_0850 alkylhydroperoxidase YP_003058798.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_003058799.1 KEGG: pzu:PHZ_c2321 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003058800.1 KEGG: atc:AGR_L_3242 hypothetical protein YP_003058801.1 KEGG: cak:Caul_4512 TonB-dependent receptor plug YP_003058802.1 KEGG: ret:RHE_CH02843 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; RimK domain protein ATP-grasp YP_003058803.1 PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: cak:Caul_3659 cell division protein FtsQ YP_003058804.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: pla:Plav_2426 cell division protein FtsA YP_003058805.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: pla:Plav_2427 cell division protein FtsZ YP_003058806.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_003058807.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: pzu:PHZ_c2311 DNA uptake lipoprotein YP_003058808.1 KEGG: ccs:CCNA_02062 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: ATPase AAA YP_003058809.1 KEGG: ccs:CCNA_01590 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; DNA-binding protein YP_003058810.1 PFAM: peptidase M24; creatinase; KEGG: pzu:PHZ_c2307 metallopeptidase M24 family protein YP_003058811.1 PFAM: ribosomal L11 methyltransferase; KEGG: ccs:CCNA_01594 ribosomal protein L11 methyltransferase YP_003058812.1 KEGG: mpo:Mpop_3330 hypothetical protein YP_003058814.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swp:swp_0096 TonB-dependent receptor YP_003058815.1 PFAM: phytase; KEGG: psa:PST_1945 phytase domain protein YP_003058817.1 PFAM: PKD domain containing protein; KEGG: sse:Ssed_2588 hypothetical protein YP_003058819.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: pla:Plav_2878 excinuclease ABC subunit C YP_003058820.1 KEGG: ara:Arad_4108 hypothetical protein YP_003058821.1 PFAM: UvrD/REP helicase; KEGG: cak:Caul_1460 UvrD/REP helicase YP_003058822.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gme:Gmet_1000 haloacid dehalogenase-like hydrolase YP_003058823.1 PFAM: chloride channel core; KEGG: sit:TM1040_0693 Cl-channel, voltage gated YP_003058824.1 KEGG: swd:Swoo_1085 hypothetical protein YP_003058825.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pla:Plav_3097 NADH:flavin oxidoreductase/NADH oxidase YP_003058826.1 KEGG: pha:PSHAb0245 hypothetical protein YP_003058827.1 KEGG: smd:Smed_2028 hypothetical protein YP_003058830.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_03504 acyl-CoA dehydrogenase YP_003058831.1 KEGG: sdy:SDY_1416 O-6-alkylguanine-DNA:cysteine-protein methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_003058832.1 PFAM: Ada metal-binding domain protein; AlkA domain protein; HhH-GPD family protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; KEGG: pzu:PHZ_c2256 transcriptional regulator, AraC family YP_003058834.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: bba:Bd2815 hypothetical protein YP_003058835.1 KEGG: tbd:Tbd_1279 hypothetical protein YP_003058836.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_003058839.1 PFAM: OsmC family protein; KEGG: vpa:VPA1099 hypothetical protein YP_003058840.1 KEGG: sit:TM1040_2834 hypothetical protein YP_003058841.1 KEGG: azc:AZC_0778 hypothetical protein YP_003058842.1 KEGG: pzu:PHZ_c2573 hypothetical protein YP_003058843.1 PFAM: protein of unknown function DUF1321; KEGG: pla:Plav_2446 hypothetical protein YP_003058844.1 KEGG: rsh:Rsph17029_1095 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003058845.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sde:Sde_2496 glyoxylase I family protein YP_003058846.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bpt:Bpet4787 TonB-dependent outer membrane receptor YP_003058847.1 KEGG: rhi:NGR_b13550 hypothetical protein YP_003058848.1 KEGG: ccs:CCNA_00154 hypothetical protein YP_003058851.1 KEGG: mlo:mll2986 hypothetical protein YP_003058852.1 PFAM: dienelactone hydrolase; KEGG: cbs:COXBURSA331_A1264 dienelactone hydrolase family protein YP_003058853.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_003058854.1 KEGG: hypothetical protein YP_003058855.1 PFAM: protein of unknown function DUF165; KEGG: dds:Ddes_0370 protein of unknown function DUF165 YP_003058856.1 PFAM: dihydrofolate reductase region; KEGG: ccs:CCNA_02210 dihydrofolate reductase YP_003058857.1 PFAM: peptidase M10A and M12B matrixin and adamalysin YP_003058859.1 PFAM: protein of unknown function DUF59; KEGG: pla:Plav_2457 hypothetical protein YP_003058860.1 KEGG: pla:Plav_2458 HflK protein; TIGRFAM: HflK protein; PFAM: hypothetical protein; SMART: hypothetical protein YP_003058861.1 KEGG: pla:Plav_2459 HflC protein; TIGRFAM: HflC protein; PFAM: hypothetical protein; SMART: hypothetical protein YP_003058862.1 KEGG: rpe:RPE_2181 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003058863.1 PFAM: helix-turn-helix HxlR type; KEGG: ara:Arad_2402 transcriptional regulator protein YP_003058864.1 KEGG: ccs:CCNA_02182 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: haloacid dehalogenase YP_003058865.1 KEGG: nha:Nham_2723 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003058866.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: mrd:Mrad2831_5323 acetolactate synthase, large subunit, biosynthetic type YP_003058867.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_003058868.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: ppu:PP_3141 WecB/TagA/CpsF family glycosyl transferase YP_003058869.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_003058870.1 KEGG: hch:HCH_04240 outer membrane protein domain-containing protein YP_003058873.1 KEGG: tgr:Tgr7_1417 outer membrane protein domain-containing protein YP_003058874.1 PFAM: rhomboid family protein; KEGG: avi:Avi_2202 hypothetical protein YP_003058876.1 PFAM: hypothetical protein; KEGG: ccs:CCNA_01607 hypothetical protein YP_003058877.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_003058878.1 PFAM: OmpA/MotB domain protein; hypothetical protein; KEGG: hch:HCH_01540 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_003058879.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: mlo:mlr4214 integral membrane protein, MFS transporter YP_003058880.1 functions in MreBCD complex in some organisms YP_003058881.1 PFAM: Rod shape-determining protein MreC; KEGG: cak:Caul_1490 rod shape-determining protein MreC YP_003058882.1 KEGG: aav:Aave_0570 hypothetical protein YP_003058883.1 KEGG: pla:Plav_2482 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003058884.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cak:Caul_1493 rod shape-determining protein RodA YP_003058885.1 PFAM: sodium:neurotransmitter symporter; KEGG: maq:Maqu_2879 sodium:neurotransmitter symporter YP_003058886.1 KEGG: cak:Caul_1598 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_003058888.1 PFAM: major facilitator superfamily MFS_1; KEGG: pzu:PHZ_c2272 permease of the major facilitator superfamily YP_003058889.1 PFAM: protein of unknown function DUF140; KEGG: cak:Caul_3564 hypothetical protein YP_003058890.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: smt:Smal_0523 ABC transporter YP_003058891.1 PFAM: hypothetical protein; KEGG: cak:Caul_3566 hypothetical protein YP_003058892.1 KEGG: ccs:CCNA_02406 membrane lipoprotein YP_003058893.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_0775 glyoxalase/bleomycin resistance protein/dioxygenase YP_003058894.1 KEGG: pzu:PHZ_c2254 hypothetical protein YP_003058896.1 PFAM: Hpt domain protein; KEGG: mrd:Mrad2831_1947 Hpt protein YP_003058897.1 PFAM: chorismate mutase; KEGG: pla:Plav_2521 chorismate mutase YP_003058898.1 KEGG: GK12566 gene product from transcript GK12566-RA YP_003058899.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ccs:CCNA_01174 LysR family transcriptional regulator YP_003058900.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pzu:PHZ_c2044 sirohaem synthase YP_003058901.1 KEGG: bja:blr1478 hypothetical protein YP_003058902.1 PFAM: glutathione S-transferase domain; KEGG: ccs:CCNA_01182 glutathione S-transferase YP_003058903.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: pla:Plav_0889 sulfite reductase (ferredoxin) YP_003058904.1 PFAM: conserved hypothetical protein; KEGG: xau:Xaut_1396 hypothetical protein YP_003058905.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_003058906.1 KEGG: hha:Hhal_1930 hypothetical protein YP_003058907.1 PFAM: protein of unknown function DUF1332; KEGG: azo:azo0017 hypothetical protein YP_003058908.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bja:blr1880 transcriptional regulatory protein YP_003058909.1 KEGG: ccs:CCNA_03768 signal recognition particle GTPase, SRP; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003058911.1 TIGRFAM: chorismate mutase; PFAM: chorismate mutase; KEGG: rhi:NGR_c32240 chorismate mutase YP_003058912.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: ccs:CCNA_03767 30S ribosomal protein S16P YP_003058913.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vsa:VSAL_I1502 acyltransferase YP_003058914.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein; RimM protein; KEGG: pzu:PHZ_c0115 16S rRNA processing protein RimM YP_003058915.1 KEGG: dol:Dole_1440 glycosyl transferase YP_003058916.1 PFAM: glycosyl transferase family 2; KEGG: azc:AZC_1582 glycosyltransferase YP_003058917.1 KEGG: tmz:Tmz1t_0031 TIR protein YP_003058918.1 KEGG: oan:Oant_0944 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003058919.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_003058920.1 PFAM: AbgT transporter; KEGG: ccs:CCNA_00782 aminobenzoyl-glutamate transporter YP_003058921.1 KEGG: pzu:PHZ_c1937 flagellar basal-body protein FlbY YP_003058922.1 KEGG: pzu:PHZ_c1936 chemotactic signal response protein CheL YP_003058923.1 PFAM: flagellar P-ring protein; KEGG: pla:Plav_2556 flagellar P-ring protein YP_003058924.1 KEGG: ccs:CCNA_02664 flagellar assembly regulator FliX YP_003058925.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: ara:Arad_2628 RNA polymerase-binding protein DksA YP_003058926.1 PFAM: flagellar L-ring protein; KEGG: pla:Plav_2559 flagellar L-ring protein YP_003058927.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: cak:Caul_1430 flagellar basal body P-ring formation protein FlgA YP_003058928.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_003058929.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cak:Caul_1432 flagellar basal body rod protein YP_003058930.1 PFAM: flagellar basal body-associated protein FliL; KEGG: cak:Caul_1433 flagellar basal body-associated protein FliL YP_003058931.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_003058932.1 KEGG: nwi:Nwi_1125 hypothetical protein YP_003058933.1 KEGG: pla:Plav_2566 hypothetical protein YP_003058934.1 KEGG: pla:Plav_2567 hypothetical protein YP_003058936.1 PFAM: catalase domain protein; KEGG: sde:Sde_0830 catalase YP_003058938.1 KEGG: Os02g0771200; hypothetical protein YP_003058939.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: azc:AZC_0366 histidine kinase YP_003058940.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: bav:BAV0973 hypothetical protein YP_003058942.1 PFAM: PP-loop domain protein; KEGG: bme:BMEI1132 PP family ATPase YP_003058944.1 PFAM: peptidase M28; peptidase M20; KEGG: amc:MADE_02736 aminopeptidase YP_003058945.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vpa:VPA0175 LysR family transcriptional regulator YP_003058946.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: saz:Sama_0275 glyoxalase/bleomycin resistance protein/dioxygenase YP_003058947.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sit:TM1040_0208 NAD(P)H dehydrogenase (quinone) YP_003058948.1 TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter YP_003058949.1 TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: pzu:PHZ_c0922 flagellar biosynthesis protein FliP YP_003058950.1 KEGG: nha:Nham_1391 hypothetical protein YP_003058951.1 KEGG: ccs:CCNA_01004 flagellar basal-body rod protein FlgB YP_003058952.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: rpb:RPB_3776 flagellar basal body rod protein FlgC YP_003058953.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: pzu:PHZ_c0926 flagellar hook-basal body complex protein FliE YP_003058954.1 PFAM: RDD domain containing protein YP_003058955.1 SMART: TIR protein; KEGG: tmz:Tmz1t_0031 TIR protein YP_003058956.1 PFAM: conserved hypothetical protein; KEGG: dal:Dalk_0015 hypothetical protein YP_003058957.1 KEGG: mlo:mlr2180 hypothetical protein YP_003058958.1 PFAM: C-methyltransferase; methyltransferase domain protein; methyltransferase type 11; methyltransferase type 12; KEGG: pla:Plav_3350 C-methyltransferase YP_003058959.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_003058960.1 PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mrd:Mrad2831_0866 8-amino-7-oxononanoate synthase YP_003058961.1 TIGRFAM: dethiobiotin synthase; KEGG: pzu:PHZ_c2380 dethiobiotin synthetase YP_003058962.1 PFAM: protein of unknown function DUF1203; KEGG: pfs:PFLU3397 hypothetical protein YP_003058963.1 KEGG: smd:Smed_5909 globin YP_003058964.1 PFAM: NADPH-dependent FMN reductase; KEGG: pat:Patl_2576 NADPH-dependent FMN reductase YP_003058965.1 PFAM: protein of unknown function DUF481; KEGG: dol:Dole_2051 hypothetical protein YP_003058967.1 PFAM: protein of unknown function DUF1704; KEGG: avn:Avin_39360 hypothetical protein YP_003058968.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sit:TM1040_0954 ABC transporter YP_003058970.1 KEGG: ara:Arad_7194 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003058971.1 PFAM: HI0933 family protein; KEGG: pfo:Pfl01_4919 hypothetical protein YP_003058972.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cja:CJA_2769 alpha-L-arabinofuranosidase, abf51A YP_003058973.1 KEGG: sse:Ssed_1837 5-carboxymethyl-2-hydroxymuconate isomerase YP_003058974.1 Converts isocitrate to alpha ketoglutarate YP_003058975.1 KEGG: ccs:CCNA_01303 hypothetical protein YP_003058976.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: sit:TM1040_1749 methyltransferase type 12 YP_003058977.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ccs:CCNA_02605 rRNA methylase, SpoU family YP_003058978.1 KEGG: pla:Plav_3564 isoprenylcysteine carboxyl methyltransferase YP_003058979.1 KEGG: xom:XOO_1719 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_003058980.1 PFAM: hypothetical protein; regulatory protein DeoR; KEGG: pzu:PHZ_c0176 transcriptional regulator YP_003058981.1 KEGG: scl:sce8879 glutathione S-transferase YP_003058983.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_003058984.1 KEGG: nmu:Nmul_A2516 methyltransferase YP_003058985.1 PFAM: protein of unknown function DUF344; KEGG: tbd:Tbd_2529 hypothetical protein YP_003058986.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sit:TM1040_0208 NAD(P)H dehydrogenase (quinone) YP_003058987.1 PFAM: helix-turn-helix HxlR type; KEGG: sit:TM1040_0207 HxlR family transcriptional regulator YP_003058988.1 KEGG: ccs:CCNA_02597 hypothetical protein YP_003058989.1 KEGG: hypothetical protein YP_003058990.1 PFAM: nitrate and nitrite sensing domain protein; chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mch:Mchl_4261 methyl-accepting chemotaxis sensory transducer YP_003058991.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_003058992.1 KEGG: bja:bll4503 hypothetical protein YP_003058993.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: avi:Avi_1936 glutaredoxin-related protein YP_003058994.1 PFAM: aldo/keto reductase; KEGG: pzu:PHZ_c1808 oxidoreductase, aldo/keto reductase family YP_003058995.1 PFAM: BolA family protein; KEGG: rsq:Rsph17025_0893 BolA family protein YP_003058996.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: pla:Plav_1064 antibiotic biosynthesis monooxygenase YP_003058997.1 PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: pzu:PHZ_c0316 zinc-dependent metallopeptidase YP_003058998.1 KEGG: nwi:Nwi_2989 hypothetical protein YP_003058999.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: bch:Bcen2424_5513 alpha/beta hydrolase domain-containing protein YP_003059000.1 KEGG: pzu:PHZ_c1010 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003059001.1 KEGG: ecz:ECS88_2808 hypothetical protein YP_003059002.1 KEGG: pen:PSEEN0559 hypothetical protein YP_003059003.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; KEGG: sit:TM1040_1463 phosphoribosylformylglycinamidine synthase I YP_003059004.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: rsp:RSP_2127 component of phosphoribosylformylglycinamidine (FGAM) synthetase YP_003059005.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_003059006.1 PFAM: protein of unknown function DUF1476; KEGG: bbt:BBta_5410 hypothetical protein YP_003059007.1 KEGG: pzu:PHZ_c1017 hypothetical protein YP_003059008.1 KEGG: hypothetical protein YP_003059009.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: met:M446_6842 adenylosuccinate lyase YP_003059010.1 PFAM: peptidoglycan-binding protein; KEGG: abo:ABO_1992 hypothetical protein YP_003059011.1 PFAM: regulatory protein TetR; KEGG: bid:Bind_1892 TetR family transcriptional regulator YP_003059012.1 PFAM: NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bid:Bind_1893 NmrA family protein YP_003059013.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: rec:RHECIAT_CH0001935 DNA repair protein YP_003059014.1 KEGG: avi:Avi_2271 methionine aminopeptidase type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_003059015.1 PFAM: molybdopterin binding domain; KEGG: sit:TM1040_2467 molybdopterin binding domain-containing protein YP_003059016.1 SMART: transcription factor jumonji jmjC domain protein; KEGG: bph:Bphy_0113 transcription factor jumonji domain-containing protein YP_003059017.1 PFAM: integrase family protein; KEGG: mlo:mll6432 symbiosis island integrase YP_003059018.1 KEGG: sme:SMc02202 hypothetical protein YP_003059019.1 PFAM: prophage CP4-57 regulator; KEGG: mex:Mext_0255 prophage CP4-57 regulatory YP_003059021.1 KEGG: pna:Pnap_2655 hypothetical protein YP_003059022.1 KEGG: pap:PSPA7_5334 type II restriction enzyme, methylase subunit YP_003059023.1 PFAM: KilA domain protein; KEGG: gur:Gura_0556 hypothetical protein YP_003059024.1 SMART: DEAD-like helicase; KEGG: pap:PSPA7_5332 Sea12 YP_003059025.1 KEGG: pap:PSPA7_5331 cytoplasmic protein YP_003059027.1 KEGG: ccs:CCNA_03458 hypothetical protein YP_003059028.1 SMART: HTTM domain protein; KEGG: ccs:CCNA_03457 hypothetical protein YP_003059029.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ilo:IL0466 RND efflux system membrane fusion protein YP_003059030.1 PFAM: acriflavin resistance protein; KEGG: pha:PSHAb0486 AcrB/AcrD/AcrF family metabolite exporter YP_003059031.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV_0433 outer membrane efflux protein YP_003059032.1 PFAM: Fibronectin type III domain protein; KEGG: amc:MADE_03479 probable aminopeptidase fused to fibronectin type 3 domain YP_003059033.1 KEGG: vvy:VV1320 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003059034.1 KEGG: cps:CPS_0478 hypothetical protein YP_003059035.1 PFAM: nitroreductase; KEGG: atc:AGR_C_3200 hypothetical protein YP_003059036.1 PFAM: NUDIX hydrolase; KEGG: pzu:PHZ_c2226 MutT/NUDIX family protein YP_003059037.1 KEGG: ccs:CCNA_02734 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; transferase YP_003059038.1 KEGG: smd:Smed_1114 hypothetical protein YP_003059039.1 PFAM: peptidase M16 domain protein; KEGG: pha:PSHAa1089 peptidase YP_003059040.1 PFAM: PhoH family protein; KEGG: cak:Caul_3741 PhoH family protein YP_003059042.1 KEGG: dac:Daci_5112 hexapaptide repeat-containing transferase YP_003059043.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_003059044.1 KEGG: pla:Plav_2639 hypothetical protein YP_003059045.1 PFAM: type IV pilus assembly PilZ; KEGG: bja:blr5568 hypothetical protein YP_003059046.1 PFAM: protein of unknown function DUF1457; KEGG: oan:Oant_1936 protein of unknown function DUF1457 YP_003059047.1 KEGG: cak:Caul_3747 hypothetical protein YP_003059048.1 KEGG: ccs:CCNA_02713 holdfast attachment protein HfaD YP_003059049.1 KEGG: ccs:CCNA_02712 holdfast attachment protein HfaB YP_003059050.1 KEGG: ccs:CCNA_02711 holdfast attachment protein HfaA YP_003059051.1 KEGG: scl:sce6240 hypothetical protein YP_003059053.1 KEGG: ecx:EcHS_A2644 addiction module; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003059054.1 PFAM: protein of unknown function DUF736; KEGG: tgr:Tgr7_1873 protein of unknown function DUF736 YP_003059055.1 KEGG: pla:Plav_1844 hypothetical protein YP_003059056.1 PFAM: conjugation TrbI family protein; KEGG: xau:Xaut_2995 conjugation TrbI family protein YP_003059057.1 TIGRFAM: ATPase P; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pla:Plav_1842 ATPase P YP_003059058.1 PFAM: Conjugal transfer protein; KEGG: mlo:mlr6403 conjugal transfer protein TrbF YP_003059059.1 KEGG: xau:Xaut_0692 conjugal transfer protein TrbF YP_003059060.1 TIGRFAM: ATPase P; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: oca:OCAR_4186 conjugal transfer protein TrbL YP_003059061.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: nwi:Nwi_2096 conjugal transfer protein TrbJ YP_003059062.1 type IV secretion system VirB4 family YP_003059063.1 KEGG: pap:PSPA7_3704 conjugal transfer protein YP_003059064.1 PFAM: Conjugal transfer protein TrbC; KEGG: mlo:mlr6398 conjugal transfer protein TrbC YP_003059065.1 TIGRFAM: ATPase P; PFAM: type II secretion system protein E; KEGG: mlo:mlr6397 conjugal transfer protein TraB YP_003059066.1 PFAM: RES domain protein; KEGG: mes:Meso_0638 hypothetical protein YP_003059067.1 KEGG: atc:AGR_C_1550 hypothetical protein YP_003059068.1 KEGG: rpa:RPA2234 hypothetical protein YP_003059069.1 PFAM: TRAG family protein; KEGG: mlo:mlr6395 conjugal transfer protein TraG YP_003059070.1 KEGG: vpa:VP1081 hypothetical protein YP_003059071.1 KEGG: vpa:VP1082 hypothetical protein YP_003059072.1 PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: vpa:VP1083 ATP-dependent DNA helicase YP_003059073.1 KEGG: spq:SPAB_01123 hypothetical protein YP_003059074.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: spq:SPAB_01124 hypothetical protein YP_003059075.1 KEGG: spq:SPAB_01125 hypothetical protein YP_003059076.1 KEGG: pla:Plav_1821 hypothetical protein YP_003059077.1 KEGG: mlo:mlr6188 plasmid transfer protein TraF YP_003059078.1 KEGG: pla:Plav_1818 hypothetical protein YP_003059079.1 KEGG: pla:Plav_1810 hypothetical protein YP_003059081.1 PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: oca:OCAR_7754 mercuric resistance operon regulatory protein YP_003059082.1 KEGG: oan:Oant_3157 mercuric transporter MerT YP_003059083.1 KEGG: cak:Caul_2323 hypothetical protein YP_003059084.1 KEGG: pub:SAR11_1183 hypothetical protein YP_003059085.1 PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rpd:RPD_2307 Cu(I)-responsive transcriptional regulator YP_003059086.1 KEGG: pha:PSHAa0304 cation efflux system protein YP_003059087.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_1483 CzcA family heavy metal efflux protein YP_003059088.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: eba:ebA2168 cation efflux system transmembrane protein YP_003059089.1 PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1335 CzcC family heavy metal RND efflux outer membrane protein YP_003059091.1 PFAM: copper resistance protein CopC; KEGG: pin:Ping_1388 copper resistance protein CopC YP_003059092.1 PFAM: copper resistance D domain protein; KEGG: tgr:Tgr7_1206 copper resistance D domain-containing protein YP_003059093.1 PFAM: copper resistance B precursor; KEGG: pla:Plav_0347 copper resistance B precursor YP_003059094.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: pzu:PHZ_p0203 copper resistance protein CopA YP_003059095.1 KEGG: cak:Caul_2315 hypothetical protein YP_003059096.1 KEGG: cak:Caul_2314 protein of unknown function, Spy-related YP_003059097.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pzu:PHZ_c1475 RNA polymerase sigma-70 factor,ECF subfamily YP_003059098.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mes:Meso_3864 protein of unknown function DUF6, transmembrane YP_003059101.1 PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: pzu:PHZ_p0147 protein-S-isoprenylcysteine methyltransferase YP_003059102.1 KEGG: ajs:Ajs_1465 hypothetical protein YP_003059103.1 PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: tcx:Tcr_1908 amino acid permease-associated region YP_003059104.1 PFAM: protein of unknown function DUF411; KEGG: reh:H16_A1333 predicted metal-binding protein YP_003059105.1 TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; KEGG: pcr:Pcryo_1777 heavy metal translocating P-type ATPase YP_003059106.1 PFAM: acyltransferase 3; KEGG: rle:RL2585 nodulation protein X ( sugar acetylase) YP_003059107.1 KEGG: pha:PSHAb0007 hypothetical protein YP_003059108.1 PFAM: Integrase catalytic region; KEGG: xau:Xaut_4005 integrase catalytic region YP_003059109.1 PFAM: outer membrane efflux protein; KEGG: cak:Caul_2294 outer membrane efflux protein YP_003059110.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ppw:PputW619_0061 RND family efflux transporter MFP subunit YP_003059111.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: abo:ABO_2471 cation efflux system protein YP_003059112.1 TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: xau:Xaut_3987 heavy metal translocating P-type ATPase YP_003059113.1 PFAM: cation efflux protein; KEGG: sit:TM1040_2930 cation efflux protein YP_003059114.1 KEGG: pha:PSHAa1115 hypothetical protein YP_003059115.1 PFAM: integrase family protein; KEGG: sit:TM1040_3585 phage integrase YP_003059116.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: abo:ABO_0808 choline/carnitine/betaine transporter family protein YP_003059117.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_0767 TonB-dependent receptor YP_003059118.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: pat:Patl_0768 sulfotransferase YP_003059119.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pzu:PHZ_c1334 MarR family transcriptional regulator YP_003059120.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sme:SMa1582 hypothetical protein YP_003059121.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_0692 GCN5-related N-acetyltransferase YP_003059122.1 PFAM: protein of unknown function DUF1355; KEGG: pla:Plav_2231 hypothetical protein YP_003059123.1 TIGRFAM: conserved hypothetical protein; KEGG: pla:Plav_2232 hypothetical protein YP_003059124.1 KEGG: rhi:NGR_c23360 hypothetical protein YP_003059125.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: mno:Mnod_5171 ATPase AAA YP_003059126.1 PFAM: protein of unknown function DUF1285; KEGG: ccs:CCNA_00411 hypothetical protein YP_003059127.1 PFAM: NUDIX hydrolase; KEGG: pzu:PHZ_c2877 MutT/NUDIX family protein YP_003059129.1 PFAM: polynucleotide adenylyltransferase region; KEGG: cak:Caul_0695 polynucleotide adenylyltransferase region YP_003059131.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_003059135.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ccs:CCNA_00504 23S rRNA methyltransferase YP_003059136.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pla:Plav_2242 ubiquinol-cytochrome C reductase, iron-sulfur subunit YP_003059137.1 PFAM: cytochrome b/b6 domain; KEGG: pzu:PHZ_c2871 ubiquinol-cytochrome C reductase, cytochrome b YP_003059138.1 PFAM: cytochrome C1; KEGG: pzu:PHZ_c2870 ubiquinol-cytochrome C reductase, cytochrome C1 YP_003059139.1 KEGG: pla:Plav_2245 methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003059140.1 PFAM: glutathione S-transferase domain; KEGG: hch:HCH_06697 glutathione S-transferase YP_003059141.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_0332 ribosomal protein alanine acetyltransferase YP_003059142.1 TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: azc:AZC_3496 adenine phosphoribosyl transferase YP_003059143.1 PFAM: peptidase S14 ClpP; KEGG: pla:Plav_0006 endopeptidase Clp YP_003059144.1 KEGG: bpt:Bpet0659 colicin exporter YP_003059145.1 PFAM: protein of unknown function DUF519; KEGG: mes:Meso_1970 protein of unknown function DUF519 YP_003059146.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_4899 Bcr/CflA subfamily drug resistance transporter YP_003059147.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xau:Xaut_3088 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003059149.1 KEGG: rsh:Rsph17029_3417 FemAB family protein YP_003059150.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_003059152.1 KEGG: cak:Caul_0666 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003059153.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_003059154.1 PFAM: Penicillinase repressor; KEGG: ccs:CCNA_03252 transcriptional regulatory protein YP_003059155.1 PFAM: peptidase M23; peptidase M56 BlaR1; KEGG: bba:Bd0398 cell wall-binding protein associated metalloendopeptidase YP_003059156.1 KEGG: oca:OCAR_7197 ribose-phosphate pyrophosphokinase (rppk); TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003059157.1 PFAM: protein of unknown function DUF152; KEGG: pzu:PHZ_c2860 hypothetical protein YP_003059158.1 PFAM: protein of unknown function DUF490; KEGG: cak:Caul_2200 hypothetical protein YP_003059159.1 PFAM: surface antigen (D15); KEGG: ccs:CCNA_01675 outer membrane protein YP_003059160.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: pla:Plav_1691 nuclease YP_003059161.1 PFAM: transcription factor CarD; KEGG: pzu:PHZ_c0707 transcriptional regulator,CarD family YP_003059162.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pla:Plav_1695 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003059163.1 PFAM: RNA-binding S4 domain protein; KEGG: sit:TM1040_0574 RNA-binding S4 YP_003059164.1 PFAM: helicase; SMART: helicase domain protein; KEGG: ccs:CCNA_00694 ATP-dependent DNA helicase YP_003059165.1 KEGG: bra:BRADO0637 hypothetical protein YP_003059166.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: sit:TM1040_0671 50S ribosomal protein L28 YP_003059167.1 PFAM: amidohydrolase; amidohydrolase; KEGG: pzu:PHZ_c2789 metal dependent amidohydrolase superfamily protein YP_003059168.1 KEGG: cak:Caul_3419 hypothetical protein YP_003059169.1 PFAM: HpcH/HpaI aldolase; KEGG: cak:Caul_0731 HpcH/HpaI aldolase YP_003059170.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cak:Caul_0724 integrase family protein YP_003059171.1 KEGG: pla:Plav_1719 hypothetical protein YP_003059173.1 PFAM: shikimate kinase; KEGG: rhi:NGR_c27230 shikimate kinase YP_003059174.1 TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; KEGG: pzu:PHZ_c0743 3-dehydroquinate synthase YP_003059175.1 PFAM: protein of unknown function DUF21; hypothetical protein; transporter-associated region; KEGG: cak:Caul_0718 hypothetical protein YP_003059176.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; SMART: regulatory protein LuxR; KEGG: met:M446_5462 LuxR family transcriptional regulator YP_003059177.1 PFAM: BolA family protein; KEGG: mpo:Mpop_3427 BolA family protein YP_003059178.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: ccs:CCNA_03105 molecular chaperones (DnaJ family) YP_003059179.1 KEGG: ccs:CCNA_03115 cobaltochelatase CobS subunit; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3 YP_003059180.1 KEGG: pzu:PHZ_c0724 cobalamin biosynthesis protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor A YP_003059181.1 KEGG: mlo:mll3560 hypothetical protein YP_003059182.1 KEGG: cak:Caul_0734 acetyl-CoA carboxylase carboxyltransferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; PFAM: acetyl-CoA carboxylase subunit alpha YP_003059183.1 PFAM: protein of unknown function DUF481; KEGG: tgr:Tgr7_2791 hypothetical protein YP_003059184.1 TIGRFAM: preprotein translocase, Secsubunit alpha; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; KEGG: pla:Plav_1730 preprotein translocase, Secsubunit alpha YP_003059185.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pzu:PHZ_c0761 peptidyl-prolyl cis-trans isomerase family protein YP_003059186.1 KEGG: mrd:Mrad2831_4942 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_003059187.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: sit:TM1040_2914 mutator MutT protein YP_003059188.1 PFAM: Flp/Fap pilin component; KEGG: mrd:Mrad2831_3495 Flp/Fap pilin component YP_003059189.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: pla:Plav_1735 methyltransferase type 11 YP_003059190.1 PFAM: phosphoribosyltransferase; KEGG: pzu:PHZ_c0768 predicted amidophosphoribosyltransferase YP_003059191.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: ccs:CCNA_00872 glutaredoxin YP_003059192.1 PFAM: protein of unknown function DUF1178; KEGG: ccs:CCNA_00870 cytosolic protein YP_003059193.1 PFAM: protein of unknown function DUF188; KEGG: ccs:CCNA_01273 EMG2 protein YP_003059194.1 PFAM: protein of unknown function DUF924; KEGG: har:HEAR1730 hypothetical protein YP_003059195.1 KEGG: pla:Plav_1742 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: methyltransferase type 11; methyltransferase type 12 YP_003059196.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_003059197.1 KEGG: pzu:PHZ_c0839 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; SMART: GAF domain protein YP_003059198.1 KEGG: pzu:PHZ_c0838 transcriptional regulator YP_003059199.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_003059200.1 PFAM: thioesterase superfamily protein; KEGG: bpl:BURPS1106A_A2790 thioesterase family protein YP_003059201.1 KEGG: cja:CJA_0831 cellulose or protein binding domain YP_003059202.1 PFAM: protein of unknown function DUF1123; KEGG: pzu:PHZ_c0261 hypothetical protein YP_003059203.1 KEGG: ccs:CCNA_00900 CHASE4-family GGDEF/EAL protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003059204.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_003059205.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: ccs:CCNA_00915 xylene monooxygenase electron transfer component YP_003059206.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: pla:Plav_1748 HemK family modification methylase YP_003059207.1 KEGG: smd:Smed_2500 hypothetical protein YP_003059208.1 KEGG: hch:HCH_06792 hypothetical protein YP_003059209.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gme:Gmet_0903 carboxynorspermidine decarboxylase YP_003059210.1 KEGG: pnu:Pnuc_1671 hypothetical protein YP_003059211.1 PFAM: Heavy metal transport/detoxification protein; KEGG: sit:TM1040_3616 periplasmic solute binding protein YP_003059212.1 KEGG: pnu:Pnuc_1673 hypothetical protein YP_003059214.1 KEGG: rlt:Rleg2_4227 hypothetical protein YP_003059215.1 PFAM: saccharopine dehydrogenase; KEGG: dvl:Dvul_2516 saccharopine dehydrogenase YP_003059216.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ccs:CCNA_00365 ornithine decarboxylase YP_003059217.1 PFAM: protein of unknown function UPF0057; KEGG: mes:Meso_3465 protein of unknown function UPF0057 YP_003059218.1 PFAM: glycosyl transferase group 1; KEGG: ccs:CCNA_03455 glycosyltransferase YP_003059219.1 KEGG: xau:Xaut_3513 hypothetical protein YP_003059220.1 Catalyzes the rate-limiting step in dNTP synthesis YP_003059221.1 KEGG: ccs:CCNA_03605 hypothetical protein YP_003059222.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_003059223.1 PFAM: glycosyl transferase family 39; KEGG: bbt:BBta_2206 hypothetical protein YP_003059224.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_003059226.1 KEGG: glo:Glov_0119 hypothetical protein YP_003059227.1 PFAM: cytochrome P450; KEGG: ccs:CCNA_00061 cytochrome P450 YP_003059228.1 KEGG: pzu:PHZ_c0354 protein tyrosine/serine phosphatase YP_003059229.1 KEGG: cak:Caul_4201 para-aminobenzoate synthase component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein YP_003059230.1 PFAM: aminotransferase class IV; KEGG: oca:OCAR_5218 aminotransferase, class IV YP_003059231.1 PFAM: TadE family protein; KEGG: pla:Plav_0225 TadE family protein YP_003059232.1 PFAM: TadE family protein; KEGG: nwi:Nwi_0306 Flp pilus assembly protein TadG YP_003059233.1 KEGG: oan:Oant_0719 hypothetical protein YP_003059234.1 PFAM: Flp/Fap pilin component; KEGG: ara:Arad_0359 component of type IV pilus YP_003059235.1 PFAM: peptidase A24A prepilin type IV; KEGG: rec:RHECIAT_CH0000248 prepilin peptidase protein YP_003059236.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bja:bll0667 CtpC protein YP_003059237.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: pla:Plav_0233 type II and III secretion system protein YP_003059238.1 KEGG: pla:Plav_0234 pilus biogenesis lipoprotein CpaD YP_003059239.1 KEGG: cak:Caul_4191 pilus assembly protein CpaE YP_003059240.1 PFAM: type II secretion system protein E; KEGG: pla:Plav_0236 type II secretion system protein E YP_003059241.1 PFAM: type II secretion system protein; KEGG: pla:Plav_0237 type II secretion system protein YP_003059242.1 PFAM: type II secretion system protein; KEGG: cak:Caul_4188 type II secretion system protein YP_003059243.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: pla:Plav_0239 TPR repeat-containing protein YP_003059244.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: swp:swp_3358 cytosol aminopeptidase family protein YP_003059245.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pla:Plav_0243 MarR family transcriptional regulator YP_003059246.1 PFAM: NLP/P60 protein; KEGG: pla:Plav_0244 NLP/P60 protein YP_003059247.1 PFAM: cytochrome C class I; KEGG: pzu:PHZ_c0360 cytochrome c, membrane-bound YP_003059248.1 PFAM: prephenate dehydratase; KEGG: azc:AZC_0138 prephenate dehydratase YP_003059249.1 KEGG: cps:CPS_3004 YHS domain-containing protein YP_003059250.1 PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; NADH pyrophosphatase-like; KEGG: ccs:CCNA_00267 MutT-like protein YP_003059251.1 SMART: TIR protein; KEGG: bxe:Bxe_C1258 hypothetical protein YP_003059253.1 KEGG: ccs:CCNA_00268 DNA polymerase III subunit gamma/tau; TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: ATPase AAA YP_003059254.1 PFAM: conserved hypothetical protein; KEGG: bcs:BCAN_A0034 hypothetical protein YP_003059256.1 KEGG: pla:Plav_0258 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein YP_003059257.1 PFAM: protein of unknown function DUF195; KEGG: afe:Lferr_2859 protein of unknown function DUF195 YP_003059258.1 KEGG: pzu:PHZ_c0373 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003059259.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: sil:SPO3216 methionyl-tRNA formyltransferase YP_003059260.1 KEGG: msl:Msil_1130 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_003059261.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: ade:Adeh_1460 methyltransferase type 11 YP_003059262.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: cak:Caul_1183 transglutaminase domain-containing protein YP_003059263.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: atc:AGR_C_648 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_003059264.1 TIGRFAM: pyrimidine 5'-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xau:Xaut_1899 pyrimidine 5'-nucleotidase YP_003059265.1 KEGG: pla:Plav_0296 hypothetical protein YP_003059266.1 KEGG: cak:Caul_4558 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003059267.1 KEGG: sde:Sde_0540 alpha amylase domain-containing protein YP_003059269.1 PFAM: GTP-binding protein HSR1-related; KEGG: sit:TM1040_0305 ribosome biogenesis GTP-binding protein YsxC YP_003059270.1 PFAM: hypothetical protein; KEGG: pzu:PHZ_c0390 preprotein translocase subunit YP_003059271.1 KEGG: pzu:PHZ_c0391 ribonuclease P protein component YP_003059272.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_003059273.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: mxa:MXAN_0599 hypothetical protein YP_003059274.1 PFAM: protein of unknown function DUF547; KEGG: hch:HCH_02172 hypothetical protein YP_003059275.1 PFAM: hypothetical protein; KEGG: pla:Plav_0303 hypothetical protein YP_003059276.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; KEGG: sit:TM1040_0315 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003059277.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pla:Plav_0305 integral membrane sensor signal transduction histidine kinase YP_003059278.1 PFAM: gamma-glutamyltranspeptidase; KEGG: pat:Patl_3459 gamma-glutamyltransferase YP_003059279.1 PFAM: peptidase S58 DmpA; KEGG: pzu:PHZ_c0447 peptidase S58, DmpA YP_003059280.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: smt:Smal_2873 peptidase S9 prolyl oligopeptidase active site domain protein YP_003059281.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01155 TonB-dependent outer membrane receptor YP_003059282.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sit:TM1040_0136 response regulator receiver YP_003059283.1 PFAM: ATP-binding region ATPase domain protein; CHASE domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: pat:Patl_0735 PAS/PAC sensor signal transduction histidine kinase YP_003059284.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: atc:AGR_C_3620 cyanobacterial phytochrome B YP_003059285.1 PFAM: protein of unknown function DUF454; KEGG: rsp:RSP_1226 hypothetical protein YP_003059286.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_003059287.1 TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pzu:PHZ_c3346 histidinol-phosphate phosphatase YP_003059288.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; KEGG: bgl:bglu_1g31110 formyltetrahydrofolate deformylase YP_003059289.1 KEGG: atc:AGR_C_842 hypothetical protein YP_003059290.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rlt:Rleg2_2709 major facilitator superfamily MFS_1 YP_003059291.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: cak:Caul_1855 sulfotransferase YP_003059293.1 PFAM: protein of unknown function DUF952; KEGG: oan:Oant_0405 protein of unknown function DUF952 YP_003059294.1 KEGG: pzu:PHZ_c0442 dihydroorotate oxidase; TIGRFAM: dihydroorotate dehydrogenase; PFAM: dihydroorotate dehydrogenase YP_003059295.1 KEGG: mno:Mnod_4148 hypothetical protein YP_003059296.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pla:Plav_0439 MATE efflux family protein YP_003059297.1 PFAM: toluene tolerance family protein; KEGG: ccs:CCNA_03807 organic solvent resistance transporter Ttg2D protein YP_003059298.1 PFAM: histone deacetylase superfamily; KEGG: mno:Mnod_6780 histone deacetylase superfamily YP_003059300.1 KEGG: cak:Caul_4206 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase; HRDC domain protein; helicase; SMART: DEAD-like helicase ; helicase; HRDC domain protein YP_003059301.1 KEGG: cju:C8J_0036 hypothetical protein YP_003059303.1 PFAM: HPP family protein; hypothetical protein; SMART: hypothetical protein; KEGG: pla:Plav_2548 HPP family protein? YP_003059305.1 PFAM: alkaline phosphatase; SMART: alkaline phosphatase; KEGG: avn:Avin_33820 alkaline phosphatase YP_003059306.1 KEGG: oca:OCAR_7294 hypothetical protein YP_003059307.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pzu:PHZ_c2741 chemotaxis protein CheYIII YP_003059308.1 PFAM: response regulator receiver; KEGG: ccs:CCNA_03198 two-component response regulator YP_003059309.1 KEGG: bja:bll1143 hypothetical protein YP_003059310.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sil:SPO3496 mechanosensitive ion channel family protein YP_003059311.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: GG15307 gene product from transcript GG15307-RA YP_003059312.1 PFAM: carbonic anhydrase; KEGG: rpt:Rpal_0862 carbonate dehydratase YP_003059314.1 PFAM: alpha/beta hydrolase fold; KEGG: ccs:CCNA_02313 alpha/beta hydrolase-family protein YP_003059315.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: mfa:Mfla_1354 succinylglutamate desuccinylase/aspartoacylase YP_003059316.1 KEGG: pzu:PHZ_c2768 hypothetical protein YP_003059317.1 PFAM: protein of unknown function DUF81; KEGG: sil:SPO0375 membrane protein YP_003059318.1 PFAM: Sel1 domain protein repeat-containing protein; peptidoglycan-binding protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: mes:Meso_0025 peptidoglycan-binding domain 1 YP_003059319.1 PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: cak:Caul_0132 MerR family transcriptional regulator YP_003059320.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pzu:PHZ_c3354 acyl-CoA dehydrogenase YP_003059321.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_003059322.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_00074 multifunctional fatty acid oxidation complex subunit alpha FadJ YP_003059323.1 PFAM: UspA domain protein; KEGG: ccs:CCNA_01519 universal stress protein family YP_003059325.1 KEGG: hypothetical protein YP_003059326.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: pzu:PHZ_c3358 DNA-cytosine methyltransferase YP_003059327.1 PFAM: fatty acid hydroxylase; KEGG: aeh:Mlg_0287 sterol desaturase-like protein YP_003059328.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: xcc:XCC0861 thioredoxin YP_003059330.1 KEGG: pmy:Pmen_3552 glutathione S-transferase-like protein YP_003059331.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: avn:Avin_39780 D-ala-D-ala dipeptidase YP_003059332.1 KEGG: hypothetical protein YP_003059334.1 KEGG: tgr:Tgr7_1681 hypothetical protein YP_003059335.1 PFAM: alpha/beta hydrolase fold; KEGG: cak:Caul_0252 alpha/beta hydrolase fold YP_003059336.1 KEGG: pzu:PHZ_c3325 hypothetical protein YP_003059337.1 KEGG: pfs:PFLU0075 zinc transport-related regulatory protein YP_003059338.1 PFAM: OmpW family protein; KEGG: xau:Xaut_1968 OmpW family protein YP_003059340.1 PFAM: von Willebrand factor A; SMART: von Willebrand factor A; KEGG: cak:Caul_3424 von Willebrand factor A YP_003059341.1 PFAM: protein of unknown function DUF885; KEGG: pzu:PHZ_c0942 hypothetical protein YP_003059342.1 PFAM: SapC family protein; KEGG: pzu:PHZ_c0328 SapC-related protein YP_003059343.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: ccs:CCNA_00217 thiol:disulfide interchange protein DsbD YP_003059345.1 KEGG: cak:Caul_4689 hypothetical protein YP_003059346.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_003059347.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: azc:AZC_3117 ATP phosphoribosyltransferase regulatory subunit YP_003059348.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_003059350.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cak:Caul_2384 glycerophosphoryl diester phosphodiesterase YP_003059351.1 KEGG: cak:Caul_0348 alkaline phosphatase YP_003059352.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0346 TonB-dependent receptor YP_003059354.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: pla:Plav_0610 chaperonin GroEL YP_003059355.1 PFAM: chaperonin Cpn10; KEGG: pla:Plav_0611 chaperonin Cpn10 YP_003059357.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: rpb:RPB_0192 methyl-accepting chemotaxis sensory transducer YP_003059358.1 PFAM: glycosyl transferase group 1; KEGG: psb:Psyr_3307 glycosyl transferase, group 1 YP_003059360.1 PFAM: TonB-dependent receptor plug; KEGG: pat:Patl_0203 TonB-dependent receptor, plug YP_003059361.1 PFAM: glycoside hydrolase family 35; KEGG: ccs:CCNA_02891 beta-galactosidase YP_003059362.1 PFAM: protein of unknown function DUF418; protein of unknown function DUF405; KEGG: cak:Caul_0371 hypothetical protein YP_003059363.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: mlo:mll2673 chaperone YP_003059364.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: mxa:MXAN_0599 hypothetical protein YP_003059365.1 PFAM: fumarylacetoacetate hydrolase; KEGG: bxe:Bxe_C1055 fumarylacetoacetate hydrolase YP_003059366.1 KEGG: cak:Caul_2670 ribonuclease Z YP_003059367.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: pzu:PHZ_c3157 hypothetical protein YP_003059368.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily subfamily IIA hydrolase like protein; KEGG: pzu:PHZ_c3158 predicted sugar phosphatases of the HAD superfamily YP_003059369.1 KEGG: mno:Mnod_0387 chemotaxis phosphatase, CheZ YP_003059370.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: mrd:Mrad2831_0885 response regulator receiver YP_003059371.1 PFAM: MaoC domain protein dehydratase; KEGG: ccs:CCNA_00741 3-hydroxybutyryl-CoA dehydratase YP_003059372.1 TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; PFAM: riboflavin kinase; FAD synthetase; cytidylyltransferase; KEGG: pla:Plav_0641 riboflavin biosynthesis protein RibF YP_003059373.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: cak:Caul_4057 isoleucyl-tRNA synthetase YP_003059374.1 PFAM: peptidase A8 signal peptidase II; KEGG: ccr:CC_0700 lipoprotein signal peptidase YP_003059375.1 KEGG: pzu:PHZ_c3163 hypothetical protein YP_003059376.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_003059377.1 PFAM: transcription activator effector binding; KEGG: bxe:Bxe_B0261 AraC family transcriptional regulator YP_003059378.1 PFAM: ribonuclease HII/HIII; KEGG: ilo:IL1670 ribonuclease HII YP_003059379.1 PFAM: peptidoglycan-binding LysM; transport-associated; SMART: peptidoglycan-binding LysM; KEGG: eta:ETA_25340 LysM domain containing protein YP_003059380.1 PFAM: regulatory protein MarR; GCN5-related N-acetyltransferase; SMART: regulatory protein MarR; KEGG: mrd:Mrad2831_4054 MarR family transcriptional regulator YP_003059382.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: cak:Caul_4642 methyltransferase YP_003059383.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: ccs:CCNA_00231 tRNA-specific adenosine deaminase YP_003059384.1 PFAM: protein of unknown function DUF81; KEGG: pzu:PHZ_c3170 hypothetical protein YP_003059385.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: ret:RHE_CH00835 pseudouridylate synthase, subunit B protein YP_003059387.1 KEGG: oan:Oant_0529 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_003059388.1 KEGG: mrd:Mrad2831_0667 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_003059389.1 KEGG: mes:Meso_0440 hypothetical protein YP_003059390.1 PFAM: peptidase M23; KEGG: pla:Plav_0622 peptidase M23B YP_003059393.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pzu:PHZ_c2946 lipid A biosynthesis lauroyl acyltransferase YP_003059394.1 KEGG: pzu:PHZ_c0511 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_003059395.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: pzu:PHZ_c0512 3-deoxy-D-manno-octulosonic-acid transferase YP_003059396.1 PFAM: protein of unknown function DUF374; KEGG: ccs:CCNA_00306 hypothetical protein YP_003059397.1 KEGG: pzu:PHZ_c0516 hypothetical protein YP_003059399.1 KEGG: ccs:CCNA_02573 proline hydroxylase YP_003059400.1 KEGG: cti:RALTA_B0266 hypothetical protein YP_003059401.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pzu:PHZ_c0519 predicted Zn-dependent protease YP_003059402.1 PFAM: inositol monophosphatase; KEGG: pla:Plav_0630 inositol-phosphate phosphatase YP_003059403.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: mrd:Mrad2831_5589 ABC transporter related YP_003059404.1 PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 thiol oxidoreductase FrnE YP_003059406.1 KEGG: lch:Lcho_4367 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B YP_003059407.1 KEGG: nwi:Nwi_2239 hypothetical protein YP_003059408.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: ccs:CCNA_03534 4-hydroxybenzoate polyprenyltransferase YP_003059409.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_003059410.1 KEGG: sit:TM1040_3076 glutamate--cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase YP_003059411.1 KEGG: cak:Caul_2763 peptidase A2A YP_003059412.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; KEGG: cak:Caul_0374 amino acid/peptide transporter YP_003059413.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ccs:CCNA_03522 microcin-processing peptidase 2 (TldD) YP_003059414.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; KEGG: bmc:BAbS19_I04550 cytochrome C oxidase polypeptide II YP_003059415.1 KEGG: ccs:CCNA_03517 cytochrome C oxidase polypeptide I CoxA; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_003059416.1 converts protoheme IX and farnesyl diphosphate to heme O YP_003059417.1 KEGG: msl:Msil_1240 hypothetical protein YP_003059418.1 PFAM: cytochrome C oxidase assembly protein CtaG/Cox11; KEGG: sit:TM1040_2333 cytochrome C oxidase assembly protein YP_003059419.1 PFAM: cytochrome C oxidase subunit III; KEGG: pzu:PHZ_c0546 cytochrome C oxidase subunit III YP_003059420.1 PFAM: protein of unknown function DUF983; KEGG: xau:Xaut_4642 hypothetical protein YP_003059421.1 KEGG: pla:Plav_0675 surfeit locus 1 family protein YP_003059422.1 KEGG: cak:Caul_4498 threonine synthase; TIGRFAM: threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta YP_003059423.1 PFAM: peptidase M16 domain protein; KEGG: bid:Bind_0721 peptidase M16 domain-containing protein YP_003059424.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: dvl:Dvul_0802 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_003059425.1 PFAM: protein of unknown function DUF179; KEGG: ccs:CCNA_03506 transcriptional regulator, AlgH YP_003059426.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: pzu:PHZ_c0554 peroxiredoxin YP_003059427.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: ccs:CCNA_03485 membrane protease family, stomatin/prohibitin-like protein YP_003059428.1 PFAM: protein of unknown function DUF107; KEGG: mes:Meso_2736 protein of unknown function DUF107 YP_003059429.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: ccs:CCNA_03070 4-oxalocrotonate tautomerase YP_003059430.1 KEGG: ccs:CCNA_03069 hypothetical protein YP_003059431.1 PFAM: glutathione S-transferase domain; KEGG: ccs:CCNA_03068 glutathione S-transferase YP_003059432.1 PFAM: helix-turn-helix HxlR type; KEGG: ccs:CCNA_03067 MarR family transcriptional regulator YP_003059433.1 PFAM: ribonuclease H; KEGG: bpe:BP3211 ribonuclease H YP_003059434.1 KEGG: xau:Xaut_2356 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase YP_003059435.1 KEGG: mca:MCA2175 hypothetical protein YP_003059436.1 PFAM: protein of unknown function DUF81; KEGG: shn:Shewana3_3118 hypothetical protein YP_003059437.1 KEGG: cak:Caul_4391 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_003059438.1 KEGG: pzu:PHZ_c2894 hypothetical protein YP_003059439.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003059440.1 TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: pla:Plav_0688 glycine cleavage system protein T YP_003059441.1 PFAM: glycine cleavage H-protein; KEGG: pzu:PHZ_c0591 glycine cleavage system protein H YP_003059442.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_003059444.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_003059445.1 KEGG: ccs:CCNA_03461 hypothetical protein YP_003059446.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mes:Meso_0699 F0F1 ATP synthase subunit B YP_003059447.1 PFAM: H+transporting two-sector ATPase B/B' subunit; ATPase F0 complex subunit 8; KEGG: rhi:NGR_c04490 FoF1 ATP synthase subunit B YP_003059448.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: smd:Smed_0448 F0F1 ATP synthase subunit C YP_003059449.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_003059450.1 KEGG: rpa:RPA0847 FoF1 ATP synthase, subunit I YP_003059451.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: pzu:PHZ_c0582 chromosome segregation SMC protein YP_003059452.1 KEGG: cak:Caul_4371 DsbA oxidoreductase YP_003059453.1 PFAM: protein of unknown function DUF721; KEGG: bra:BRADO2002 hypothetical protein YP_003059454.1 PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: mes:Meso_0765 A/G-specific DNA-adenine glycosylase YP_003059455.1 PFAM: peptidase M23; KEGG: pla:Plav_1754 peptidase M23B YP_003059456.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_c00340 predicted glyoxalase/bleomycin resistance protein/dioxygenase YP_003059457.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pzu:PHZ_c0577 modification methylase YP_003059458.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: azc:AZC_0428 elongator protein 3 YP_003059459.1 KEGG: pla:Plav_0709 hypothetical protein YP_003059460.1 PFAM: glycosyl transferase family 2; KEGG: bbt:BBta_3382 glycosyl transferase, group 2 family protein YP_003059461.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; KEGG: ccs:CCNA_03171 hybrid sensor histidine kinase/receiver domain protein YP_003059462.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: rpb:RPB_1083 phage SPO1 DNA polymerase-related protein YP_003059463.1 PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; KEGG: cak:Caul_2167 electron-transferring-flavoprotein dehydrogenase YP_003059464.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: bbt:BBta_2347 hypothetical protein YP_003059465.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: nwi:Nwi_2594 hypothetical protein YP_003059466.1 KEGG: pzu:PHZ_c1359 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_003059467.1 PFAM: glycosyl transferase family 4; KEGG: pfo:Pfl01_4053 glycosyl transferase YP_003059468.1 PFAM: polyprenyl synthetase; KEGG: pla:Plav_0722 polyprenyl synthetase YP_003059469.1 KEGG: pla:Plav_0723 hypothetical protein YP_003059470.1 PFAM: methyltransferase small; methyltransferase type 12; RNA methylase; KEGG: pzu:PHZ_c0780 methyltransferase YP_003059472.1 PFAM: protein of unknown function DUF1234; KEGG: avi:Avi_1908 hypothetical protein YP_003059474.1 PFAM: nitroreductase; KEGG: ses:SARI_02359 dihydropteridine reductase YP_003059475.1 PFAM: helix-turn-helix HxlR type; KEGG: dat:HRM2_14980 transcriptional regulator (MarR family protein) YP_003059476.1 PFAM: protein of unknown function DUF1080; KEGG: cja:CJA_0942 domain of unknown function (DUF1080) superfamily YP_003059478.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bid:Bind_0303 GCN5-related N-acetyltransferase YP_003059479.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_003059480.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ccs:CCNA_03257 chemotaxis receiver domain protein cheYIII YP_003059481.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ccs:CCNA_03257 chemotaxis receiver domain protein cheYIII YP_003059482.1 PFAM: aminotransferase class I and II; KEGG: ccs:CCNA_01603 aspartate aminotransferase YP_003059483.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: psa:PST_3574 PhnA protein YP_003059484.1 KEGG: ank:AnaeK_4340 thioesterase-like protein YP_003059485.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: psb:Psyr_0092 lysine exporter protein LysE/YggA YP_003059486.1 PFAM: YCII-related; KEGG: swd:Swoo_0824 DGPFAETKE family protein YP_003059487.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: bbt:BBta_6184 RNA polymerase sigma factor YP_003059488.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VP1798 hypothetical protein YP_003059489.1 PFAM: ferritin; KEGG: pla:Plav_2302 ferritin Dps family protein YP_003059490.1 SMART: helix-turn-helix domain protein; KEGG: cti:RALTA_B0429 transcriptional regulator, HTH YP_003059491.1 KEGG: rpt:Rpal_0998 hypothetical protein YP_003059492.1 KEGG: rpb:RPB_4480 hypothetical protein YP_003059493.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbk:BARBAKC583_0980 LysR family transcriptional regulator YP_003059494.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pla:Plav_2305 thioredoxin reductase YP_003059495.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: csa:Csal_0395 cation diffusion facilitator family transporter YP_003059496.1 PFAM: protein of unknown function DUF1022; KEGG: cak:Caul_4294 hypothetical protein YP_003059497.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: cak:Caul_4293 transcription elongation factor GreA YP_003059498.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; MGS domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; KEGG: pla:Plav_2313 carbamoyl-phosphate synthase, large subunit YP_003059500.1 KEGG: bja:blr5517 two-component response regulator YP_003059501.1 PFAM: beta-lactamase; KEGG: pzu:PHZ_c1902 glyoxalase II family protein YP_003059502.1 PFAM: peptidase M48 Ste24p; KEGG: smt:Smal_2760 peptidase M48 Ste24p YP_003059504.1 KEGG: bja:bll4376 hypothetical protein YP_003059505.1 KEGG: pub:SAR11_1181 hypothetical protein YP_003059506.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; carbamoyl-phosphate synthase small chain; KEGG: ccs:CCNA_02925 carbamoyl-phosphate synthase small chain YP_003059507.1 KEGG: bme:BMEI0527 cytoplasmic protein YP_003059508.1 synthesizes RNA primers at the replication forks YP_003059509.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_003059510.1 KEGG: pzu:PHZ_c0830 hypothetical protein YP_003059512.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: lpp:lpp1144 hypothetical protein YP_003059513.1 SMART: helix-turn-helix domain protein; KEGG: hap:HAPS_1579 XRE family transcriptional regulator YP_003059514.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003059515.1 KEGG: azc:AZC_1032 glycyl-tRNA synthetase beta subunit; TIGRFAM: glycyl-tRNA synthetase subunit beta YP_003059516.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003059517.1 PFAM: cell wall hydrolase SleB; KEGG: pla:Plav_0730 cell wall hydrolase SleB YP_003059518.1 KEGG: met:M446_6423 hypothetical protein YP_003059519.1 PFAM: transcriptional regulator; alpha/beta hydrolase fold; KEGG: smd:Smed_5761 alpha/beta hydrolase fold YP_003059520.1 KEGG: nha:Nham_2821 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003059521.1 catalyzes the formation of oxaloacetate from L-aspartate YP_003059523.1 TIGRFAM: quinolinate synthetase complex, subunit alpha; PFAM: Quinolinate synthetase A; KEGG: cak:Caul_4308 quinolinate synthetase YP_003059524.1 PFAM: acyltransferase 3; KEGG: mes:Meso_0913 acyltransferase 3 YP_003059525.1 PFAM: lipolytic protein G-D-S-L family; KEGG: mes:Meso_0912 lipolytic enzyme, G-D-S-L YP_003059526.1 KEGG: ccs:CCNA_01517 hypothetical protein YP_003059527.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ccr:CC_1451 hypothetical protein YP_003059530.1 PFAM: methyladenine glycosylase; KEGG: pla:Plav_0747 DNA-3-methyladenine glycosylase I YP_003059531.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: azc:AZC_0401 glycine cleavage T protein YP_003059532.1 PFAM: ion transporter ; ion transport protein; KEGG: mch:Mchl_5039 ion transporter YP_003059533.1 PFAM: response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; KEGG: pla:Plav_2396 histidine kinase YP_003059534.1 KEGG: rlt:Rleg2_1016 hypothetical protein YP_003059536.1 PFAM: FAD linked oxidase; KEGG: pzu:PHZ_c0560 FAD/FMN-containing dehydrogenase YP_003059538.1 TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: mmw:Mmwyl1_1486 sodium/hydrogen exchanger YP_003059539.1 PFAM: DSBA oxidoreductase; KEGG: dac:Daci_5356 DsbA oxidoreductase YP_003059540.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dac:Daci_5357 short-chain dehydrogenase/reductase SDR YP_003059541.1 PFAM: helix-turn-helix HxlR type; KEGG: reu:Reut_A0237 hypothetical protein YP_003059542.1 PFAM: protein of unknown function DUF1332; KEGG: sit:TM1040_1709 hypothetical protein YP_003059545.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: cak:Caul_1692 pseudouridine synthase YP_003059546.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: oca:OCAR_5322 hypothetical protein YP_003059547.1 KEGG: hch:HCH_03562 hypothetical protein YP_003059548.1 KEGG: bja:bsl2245 hypothetical protein YP_003059550.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: mmw:Mmwyl1_3833 NAD(P) transhydrogenase subunit alpha YP_003059551.1 PFAM: protein of unknown function DUF328; KEGG: ccs:CCNA_03496 cytosolic protein YP_003059553.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; KEGG: rpe:RPE_4380 SUA5/YciO/YrdC/YwlC family protein YP_003059554.1 PFAM: cytochrome B561; YceI family protein; KEGG: cak:Caul_4487 YceI family protein YP_003059555.1 PFAM: YceI family protein; KEGG: ccs:CCNA_02692 hypothetical protein YP_003059556.1 PFAM: YceI family protein; KEGG: ccs:CCNA_02692 hypothetical protein YP_003059557.1 PFAM: aldo/keto reductase; KEGG: cak:Caul_4994 aldo/keto reductase YP_003059559.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmy:Pmen_1087 hypothetical protein YP_003059561.1 TIGRFAM: TonB family protein; KEGG: vsa:VSAL_II0901 TonB3 protein YP_003059563.1 PFAM: alcohol dehydrogenase GroES; alcohol dehydrogenase zinc-binding domain protein; KEGG: sde:Sde_3956 zinc-containing alcohol dehydrogenase family protein YP_003059564.1 PFAM: Domain of unknown function DUF1863; KEGG: pmr:PMI0515 phage replication protein YP_003059566.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pzu:PHZ_c2920 permease of the drug/metabolite transporter (DMT) superfamily YP_003059567.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_003059568.1 KEGG: sfu:Sfum_3154 hypothetical protein YP_003059569.1 PFAM: beta-lactamase; KEGG: ccs:CCNA_00399 zinc metallohydrolase, glyoxalase II family YP_003059571.1 PFAM: protein of unknown function DUF74; KEGG: pin:Ping_0381 hypothetical protein YP_003059572.1 KEGG: bid:Bind_2442 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_003059573.1 KEGG: ccs:CCNA_02361 polysaccharide biosynthesis protein CelD YP_003059574.1 PFAM: phosphoglycerate mutase; KEGG: ccs:CCNA_02152 phosphoglycerate mutase YP_003059575.1 TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; KEGG: ccs:CCNA_02151 exodeoxyribonuclease VII small subunit YP_003059576.1 PFAM: polyprenyl synthetase; KEGG: cak:Caul_3315 polyprenyl synthetase YP_003059577.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_003059578.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pst:PSPTO_4892 phosphinothricin N-acetyltransferase YP_003059579.1 PFAM: protein of unknown function DUF938; KEGG: bph:Bphy_4714 hypothetical protein YP_003059580.1 KEGG: pzu:PHZ_c1346 hemolysin A; TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003059581.1 KEGG: pla:Plav_0784 hypothetical protein YP_003059582.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_003059584.1 KEGG: ccs:CCNA_00966 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003059585.1 KEGG: hypothetical protein YP_003059586.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cak:Caul_1971 glycerophosphoryl diester phosphodiesterase YP_003059587.1 activates fatty acids by binding to coenzyme A YP_003059588.1 PFAM: protein of unknown function DUF1499; KEGG: eba:ebA2569 hypothetical protein YP_003059589.1 PFAM: beta-lactamase; KEGG: ccs:CCNA_00971 hydroxyacylglutathione hydrolase YP_003059591.1 PFAM: protein of unknown function DUF442; KEGG: cak:Caul_1318 hypothetical protein YP_003059592.1 TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type; PFAM: peptidase S49; KEGG: pzu:PHZ_c2729 signal peptide peptidase SppA YP_003059593.1 KEGG: pzu:PHZ_c0702 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003059594.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: cak:Caul_3856 molybdenum cofactor synthesis domain-containing protein YP_003059596.1 KEGG: aha:AHA_3434 TonB system biopolymer transport component YP_003059597.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_2989 MotA/TolQ/ExbB proton channel YP_003059598.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: spl:Spea_2650 MotA/TolQ/ExbB proton channel YP_003059599.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: pat:Patl_4069 biopolymer transporter ExbD/TolR YP_003059600.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: sde:Sde_0355 branched-chain amino acid aminotransferase I YP_003059601.1 KEGG: vsa:VSAL_II0115 TonB protein YP_003059602.1 SMART: hypothetical protein; KEGG: vha:VIBHAR_00632 hypothetical protein YP_003059603.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: rec:RHECIAT_CH0001313 protease II protein YP_003059604.1 KEGG: mes:Meso_0863 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B YP_003059605.1 PFAM: MaoC domain protein dehydratase; KEGG: pzu:PHZ_c2720 aldehyde dehydrogenase YP_003059607.1 KEGG: ccs:CCNA_00997 hypothetical protein YP_003059608.1 PFAM: cation antiporter; KEGG: sse:Ssed_3661 cation antiporter YP_003059609.1 PFAM: multiple resistance and pH regulation protein F; KEGG: pla:Plav_2972 multiple resistance and pH regulation protein F YP_003059610.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: sse:Ssed_3663 multisubunit Na+/H+ antiporter MnhG subunit-like protein YP_003059611.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_003059612.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: pla:Plav_2968 NADH-ubiquinone oxidoreductase chain 4L YP_003059613.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_003059614.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pla:Plav_2966 NADH dehydrogenase (quinone) YP_003059615.1 KEGG: pla:Plav_2965 hypothetical protein YP_003059616.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_003059617.1 PFAM: ROSMUCR transcriptional regulator; KEGG: msl:Msil_1673 MucR family transcriptional regulator YP_003059618.1 KEGG: pla:Plav_0872 hypothetical protein YP_003059619.1 PFAM: Chromosomal replication initiator DnaA domain; SMART: replication initiation factor DnaA; KEGG: xau:Xaut_0073 chromosomal replication initiator DnaA domain-containing protein YP_003059621.1 PFAM: Fe-S metabolism associated SufE; KEGG: ccs:CCNA_01114 SufE protein YP_003059622.1 KEGG: ccs:CCNA_00519 hypothetical protein YP_003059623.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mes:Meso_1553 periplasmic sensor signal transduction histidine kinase YP_003059624.1 KEGG: ccs:CCNA_01117 hypothetical protein YP_003059626.1 PFAM: protein of unknown function DUF1491; KEGG: xau:Xaut_1408 hypothetical protein YP_003059627.1 KEGG: cak:Caul_1243 hypothetical protein YP_003059628.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: ccs:CCNA_01123 bacterial peptide chain release factor 3 (RF-3) YP_003059629.1 KEGG: cak:Caul_4168 hypothetical protein YP_003059630.1 KEGG: cak:Caul_4167 hypothetical protein YP_003059631.1 PFAM: MscS Mechanosensitive ion channel; KEGG: tgr:Tgr7_2594 MscS mechanosensitive ion channel YP_003059632.1 KEGG: cak:Caul_1258 hypothetical protein YP_003059633.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rpb:RPB_3202 ABC transporter YP_003059634.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: ccs:CCNA_03386 multimodular transpeptidase-transglycosylase PBP 1A YP_003059636.1 PFAM: protein of unknown function DUF264; KEGG: pla:Plav_0902 hypothetical protein YP_003059637.1 KEGG: rlt:Rleg2_4227 hypothetical protein YP_003059638.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: cak:Caul_3916 HK97 family phage portal protein YP_003059639.1 KEGG: ccs:CCNA_02875 hypothetical protein YP_003059640.1 TIGRFAM: phage prohead protease HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: rsh:Rsph17029_1132 HK97 family phage prohead protease YP_003059641.1 KEGG: oan:Oant_0084 hypothetical protein YP_003059642.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: bxe:Bxe_B0269 methionine aminopeptidase, type I YP_003059644.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: ccs:CCNA_02872 phage prohead protease YP_003059645.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mes:Meso_1193 phage repressor YP_003059647.1 KEGG: lpc:LPC_0900 hypothetical protein YP_003059648.1 KEGG: avi:Avi_1339 hypothetical protein YP_003059649.1 KEGG: oca:OCAR_6595 gene transfer agent YP_003059650.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: pla:Plav_2390 activator of HSP90 ATPase 1 family protein YP_003059651.1 TIGRFAM: phage major tail protein, TP901-1 family; KEGG: sil:SPO2257 TP901-1 family major tail protein YP_003059653.1 KEGG: rsq:Rsph17025_3709 glycoside hydrolase family protein YP_003059654.1 KEGG: cak:Caul_3903 hypothetical protein YP_003059655.1 TIGRFAM: phage cell wall peptidase, NlpC/P60 family; KEGG: ccs:CCNA_02863 Spr-family cell wall-associated hydrolase YP_003059656.1 KEGG: pla:Plav_0919 gene transfer agent (GTA) like protein YP_003059657.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: ccs:CCNA_02860 chaperone protein DnaJ YP_003059658.1 KEGG: cak:Caul_3897 peptidase YP_003059659.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pla:Plav_0928 two component transcriptional regulator YP_003059660.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: pla:Plav_0929 integral membrane sensor signal transduction histidine kinase YP_003059661.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: cak:Caul_3893 cytochrome C biogenesis protein CcmI YP_003059662.1 PFAM: CcmE/CycJ protein; KEGG: azc:AZC_1133 cytochrome c-type biogenesis protein YP_003059663.1 PFAM: cytochrome C assembly protein; KEGG: pzu:PHZ_c2691 cytochrome C biogenesis protein CycK YP_003059664.1 PFAM: cytochrome C biogenesis protein; KEGG: cak:Caul_3890 cytochrome C biogenesis protein YP_003059665.1 PFAM: OsmC family protein; KEGG: rpe:RPE_1687 OsmC family protein YP_003059666.1 KEGG: pzu:PHZ_c2689 serine protease HtrA; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003059667.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pzu:PHZ_c2688 response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) YP_003059668.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pzu:PHZ_c2687 sensor histidine kinase YP_003059669.1 PFAM: GlnD PII-uridylyltransferase; glutamate-ammonia ligase adenylyltransferase; KEGG: pzu:PHZ_c2686 glutamate-ammonia-ligase adenylyltransferase YP_003059670.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: pla:Plav_0950 signal transduction protein YP_003059671.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: pla:Plav_0951 ECF subfamily RNA polymerase sigma-24 factor YP_003059672.1 KEGG: bpy:Bphyt_5022 hypothetical protein YP_003059673.1 KEGG: bph:Bphy_4088 membrane-associated protein YP_003059674.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pzu:PHZ_c2681 sensor histidine kinase (non-motile and phage-resistance protein ) YP_003059675.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: cak:Caul_1223 response regulator receiver YP_003059676.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: ccs:CCNA_01140 sensory box/GGDEF family protein YP_003059677.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: pzu:PHZ_c2680 aminopeptidase N YP_003059678.1 KEGG: cak:Caul_3428 hypothetical protein YP_003059680.1 PFAM: peptidase M48 Ste24p; KEGG: pla:Plav_2301 peptidase M48 Ste24p YP_003059682.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: bpy:Bphyt_3059 glycosyl transferase family 2 YP_003059683.1 KEGG: pla:Plav_1494 thioesterase superfamily protein YP_003059684.1 KEGG: pla:Plav_1495 hypothetical protein YP_003059685.1 KEGG: pla:Plav_1496 lipoprotein transmembrane YP_003059686.1 PFAM: monooxygenase FAD-binding; tryptophan halogenase; FAD dependent oxidoreductase; KEGG: shn:Shewana3_0331 monooxygenase, FAD-binding YP_003059687.1 KEGG: pla:Plav_1498 hypothetical protein YP_003059688.1 PFAM: beta-ketoacyl synthase; KEGG: pla:Plav_1499 beta-ketoacyl synthase YP_003059689.1 KEGG: pla:Plav_1500 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_003059690.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pla:Plav_1501 3-oxoacyl-(acyl-carrier-protein) reductase YP_003059691.1 PFAM: beta-ketoacyl synthase; KEGG: pla:Plav_1502 beta-ketoacyl synthase YP_003059692.1 PFAM: MltA-interacting MipA family protein; KEGG: tbd:Tbd_2761 outer membrane protein YP_003059693.1 KEGG: ccv:CCV52592_1161 excinuclease ATPase YP_003059694.1 KEGG: cja:CJA_0094 excinuclease ATPase YP_003059695.1 PFAM: glycosyl transferase family 2; KEGG: ilo:IL0132 glycosyltransferase YP_003059697.1 KEGG: sse:Ssed_0327 hypothetical protein YP_003059698.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: pla:Plav_1487 phospholipid/glycerol acyltransferase YP_003059699.1 PFAM: phosphopantetheine-binding; KEGG: csa:Csal_2749 acyl carrier protein YP_003059700.1 PFAM: phosphopantetheine-binding; KEGG: vfm:VFMJ11_0885 acyl carrier protein YP_003059701.1 KEGG: pla:Plav_1490 hypothetical protein YP_003059702.1 KEGG: pla:Plav_1491 AMP-dependent synthetase and ligase YP_003059703.1 SMART: rhodanese; KEGG: sit:TM1040_1537 rhodanese-like protein YP_003059704.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: pla:Plav_1493 histidine ammonia-lyase YP_003059705.1 PFAM: peptidase M19 renal dipeptidase; KEGG: amc:MADE_03672 dipeptidase YP_003059706.1 PFAM: GtrA family protein; KEGG: bph:Bphy_0865 GtrA family protein YP_003059707.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sit:TM1040_0408 short-chain dehydrogenase/reductase SDR YP_003059708.1 KEGG: sit:TM1040_0409 hypothetical protein YP_003059709.1 KEGG: ppw:PputW619_3178 hypothetical protein YP_003059710.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: sit:TM1040_0412 cyclopropane-fatty-acyl-phospholipid synthase YP_003059711.1 PFAM: protein of unknown function DUF1365; KEGG: sit:TM1040_0413 hypothetical protein YP_003059712.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sit:TM1040_0414 FAD dependent oxidoreductase YP_003059713.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: avi:Avi_0089 RNA polymerase sigma subunit protein YP_003059714.1 TIGRFAM: anti-sigma factor, , ChrR family; KEGG: rsp:RSP_1093 anti-sigma factor ChrR YP_003059715.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase type 12; methyltransferase type 11; KEGG: pla:Plav_3003 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003059716.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ccs:CCNA_01379 type I secretion outer membrane protein rsaFb YP_003059717.1 KEGG: mrd:Mrad2831_5431 hypothetical protein YP_003059718.1 TIGRFAM: valyl-tRNA synthetase; KEGG: sit:TM1040_1706 valyl-tRNA synthetase YP_003059719.1 PFAM: peptidase T2 asparaginase 2; KEGG: azc:AZC_2990 aspartylglucosaminidase family protein YP_003059720.1 KEGG: slo:Shew_3651 hypothetical protein YP_003059721.1 KEGG: hypothetical protein ; K06675 structural maintenance of chromosome 4 YP_003059722.1 PFAM: alpha/beta hydrolase fold; KEGG: ilo:IL1807 alpha/beta fold family hydrolase YP_003059723.1 PFAM: protein of unknown function DUF983; KEGG: bja:blr5113 hypothetical protein YP_003059724.1 TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; KEGG: pla:Plav_3018 exodeoxyribonuclease III Xth YP_003059725.1 PFAM: AsmA family protein; KEGG: pla:Plav_0552 AsmA family protein YP_003059726.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_3024 metallophosphoesterase YP_003059727.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rhi:NGR_b14430 transcriptional regulatory protein, LysR-family YP_003059728.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ccs:CCNA_01491 cystathionine beta-lyase YP_003059729.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: pzu:PHZ_c1629 rhodanese family protein YP_003059730.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ccs:CCNA_01493 cysteine synthase YP_003059731.1 PFAM: lipolytic protein G-D-S-L family; KEGG: vsp:VS_II1297 lipase/acylhydrolase family protein YP_003059732.1 PFAM: S1/P1 nuclease; KEGG: pat:Patl_0244 S1/P1 nuclease YP_003059733.1 TIGRFAM: DNA repair protein RecO; KEGG: pla:Plav_2876 DNA repair protein RecO YP_003059734.1 KEGG: abu:Abu_0796 hypothetical protein YP_003059735.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003059736.1 PFAM: LemA family protein; KEGG: oca:OCAR_6988 LemA YP_003059737.1 PFAM: protein of unknown function DUF423; KEGG: amc:MADE_02564 uncharacterized small membrane protein YP_003059738.1 PFAM: histidine kinase dimerisation/phosphoacceptor; GAF domain protein; ATP-binding region ATPase domain protein; KEGG: xac:XAC3335 sensor histidine kinase YP_003059739.1 PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: pla:Plav_2880 TRAP dicarboxylate transporter DctM subunit YP_003059740.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: hch:HCH_00747 TRAP-type mannitol/chloroaromatic compound transporter, small permease YP_003059741.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pla:Plav_2882 TRAP dicarboxylate transporter-DctP subunit YP_003059742.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_003059743.1 PFAM: TrkA-C domain protein; citrate transporter; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: pla:Plav_2884 TrkA domain-containing protein YP_003059744.1 PFAM: OmpA/MotB domain protein; KEGG: pzu:PHZ_c1687 chemotaxis MotB protein YP_003059745.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rlt:Rleg2_2072 6-phosphogluconate dehydrogenase NAD-binding YP_003059746.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: pha:PSHAa1141 6-phosphogluconolactonase YP_003059748.1 PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: mrd:Mrad2831_3963 serine protein kinase, PrkA YP_003059749.1 PFAM: protein of unknown function DUF444; KEGG: bja:bll6755 hypothetical protein YP_003059750.1 PFAM: SpoVR family protein; KEGG: rlt:Rleg2_2559 SpoVR family protein YP_003059751.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: rpe:RPE_2281 excinuclease ABC, C subunit domain protein YP_003059752.1 PFAM: alcohol dehydrogenase GroES; KEGG: pzu:PHZ_c3128 NADPH:quinone reductase YP_003059753.1 PFAM: glutathione S-transferase domain; KEGG: ccs:CCNA_02936 glutathione S-transferase YP_003059754.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: ccs:CCNA_01409 delta-aminolevulinic acid dehydratase YP_003059755.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pla:Plav_3174 GCN5-related N-acetyltransferase YP_003059757.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: pzu:PHZ_c1679 enoyl-CoA hydratase/isomerase family protein YP_003059758.1 PFAM: regulatory protein MarR; KEGG: mno:Mnod_7567 MarR family transcriptional regulator YP_003059759.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_003059760.1 KEGG: pla:Plav_2906 hypothetical protein YP_003059761.1 PFAM: ROSMUCR transcriptional regulator; KEGG: pzu:PHZ_c1676 transcriptional regulator YP_003059762.1 PFAM: glycine hydroxymethyltransferase; aminotransferase class-III; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rsq:Rsph17025_0354 serine hydroxymethyltransferase YP_003059763.1 PFAM: ATP-cone domain protein; KEGG: pla:Plav_2909 ATP-cone domain-containing protein YP_003059764.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_003059765.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pzu:PHZ_c3296 riboflavin biosynthesis protein RibA YP_003059766.1 KEGG: bcs:BCAN_A0782 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003059767.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: pzu:PHZ_c1668 N utilization substance protein B YP_003059768.1 KEGG: pla:Plav_2915 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003059769.1 KEGG: cak:Caul_3042 hypothetical protein YP_003059770.1 PFAM: SmpA/OmlA domain protein; KEGG: ccs:CCNA_01427 lipoprotein, SmpA/OmlA family YP_003059771.1 PFAM: Ubiquinol-cytochrome C chaperone; KEGG: mrd:Mrad2831_3971 ubiquinol-cytochrome C chaperone YP_003059772.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: pla:Plav_2922 fatty acid/phospholipid synthesis protein PlsX YP_003059773.1 KEGG: azc:AZC_2294 beta-ketoacyl-acyl carrier protein synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_003059774.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: rsq:Rsph17025_1913 integration host factor, subunit alpha YP_003059775.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: cak:Caul_3031 MerR family transcriptional regulator YP_003059776.1 PFAM: acyltransferase 3; KEGG: pag:PLES_25611 hypothetical protein YP_003059777.1 KEGG: vsp:VS_2791 uncharacterized membrane-associated protein YP_003059779.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpe:RPE_2629 iron-sulfur cluster assembly accessory protein YP_003059780.1 KEGG: pla:Plav_3021 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003059781.1 PFAM: sporulation domain protein; KEGG: rpc:RPC_2509 sporulation related YP_003059782.1 PFAM: glycoside hydrolase; KEGG: oca:OCAR_6271 beta-hexosaminidase YP_003059783.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: pzu:PHZ_c1965 segregation and condensation protein A YP_003059784.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pzu:PHZ_c1964 segregation and condensation protein B YP_003059785.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: bid:Bind_2705 twin arginine-targeting protein translocase YP_003059786.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: pzu:PHZ_c1962 sec-independent protein secretion pathway components TatB YP_003059787.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pla:Plav_3029 sec-independent protein translocase, TatC subunit YP_003059788.1 KEGG: mmw:Mmwyl1_1503 hypothetical protein YP_003059789.1 KEGG: pzu:PHZ_c1960 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_003059790.1 KEGG: ccs:CCNA_02077 acid phosphatase SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_003059791.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: pzu:PHZ_c1958 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003059792.1 PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: pla:Plav_3033 peptidase M23B YP_003059793.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pzu:PHZ_c1955 preprotein translocase, YajC subunit YP_003059794.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: avi:Avi_2658 protein-export membrane protein SecD YP_003059795.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: pla:Plav_3037 protein-export membrane protein SecF YP_003059796.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: slo:Shew_2995 TonB family protein YP_003059797.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rpb:RPB_4561 methyl-accepting chemotaxis sensory transducer YP_003059798.1 PFAM: manganese and iron superoxide dismutase; KEGG: mxa:MXAN_4826 superoxide dismutase, Fe YP_003059799.1 KEGG: pzu:PHZ_c1950 phytoene synthase protein YP_003059800.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pha:PSHAa1832 cryptic haloacid dehalogenase 1 (partial) YP_003059801.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: hch:HCH_04236 FOG: CheY-like receiver YP_003059802.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_003059803.1 KEGG: pzu:PHZ_c1109 hypothetical protein YP_003059804.1 KEGG: pzu:PHZ_c1948 hypothetical protein YP_003059805.1 TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: ccs:CCNA_02673 excinuclease ABC subunit A YP_003059806.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rle:RL2399 single-strand DNA-binding protein YP_003059807.1 KEGG: pla:Plav_3049 DNA gyrase subunit alpha; TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003059808.1 KEGG: ccs:CCNA_01652 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003059809.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pzu:PHZ_c1398 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_003059810.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: nwi:Nwi_1797 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_003059811.1 KEGG: cak:Caul_2192 hypothetical protein YP_003059812.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_2620 enoyl-CoA hydratase YP_003059813.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mno:Mnod_3853 cold-shock DNA-binding domain protein YP_003059814.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sde:Sde_0262 bacteriophytochrome-like protein YP_003059815.1 KEGG: bav:BAV3406 hypothetical protein YP_003059816.1 PFAM: protein of unknown function DUF182; KEGG: avi:Avi_2455 hypothetical protein YP_003059817.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: amc:MADE_02379 twin-arginine translocation pathway signal YP_003059818.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: bmj:BMULJ_04758 isoquinoline 1-oxidoreductase, subunit alpha YP_003059819.1 KEGG: mrd:Mrad2831_3898 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003059820.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase; KEGG: pzu:PHZ_c2343 tRNA-dihydrouridine synthase YP_003059821.1 KEGG: ccs:CCNA_01365 aspartyl protease PerP YP_003059823.1 PFAM: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: xau:Xaut_3321 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_003059825.1 KEGG: pzu:PHZ_c1835 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003059826.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_003059827.1 KEGG: msl:Msil_1610 alpha/beta hydrolase domain protein YP_003059828.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pla:Plav_3264 BadM/Rrf2 family transcriptional regulator YP_003059829.1 PFAM: aminotransferase class V; KEGG: rpb:RPB_2995 aminotransferase, class V YP_003059830.1 with SufCD activates cysteine desulfurase SufS YP_003059831.1 KEGG: ccs:CCNA_01938 ATP-dependent transporter SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA YP_003059832.1 PFAM: SufBD protein; KEGG: ccs:CCNA_01937 SufD protein YP_003059833.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ccs:CCNA_01936 cysteine desulfurase/selenocysteine lyase YP_003059834.1 TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: met:M446_5105 FeS assembly SUF system protein YP_003059835.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: pzu:PHZ_c1715 HesB/YadR/YfhF family protein YP_003059836.1 KEGG: cps:CPS_3994 lipoprotein YP_003059837.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c0652 TonB-dependent receptor YP_003059838.1 KEGG: tgr:Tgr7_0224 general secretion pathway protein C YP_003059839.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pzu:PHZ_c0654 type II secretory pathway protein D YP_003059840.1 KEGG: pzu:PHZ_c0655 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: ATPase AAA YP_003059841.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: xac:XAC0697 type II secretion system protein F YP_003059842.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pzu:PHZ_c0657 type II secretion system protein G YP_003059843.1 TIGRFAM: general secretion pathway protein H; KEGG: sfr:Sfri_0109 general secretion pathway protein H YP_003059844.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: cps:CPS_4586 general secretion pathway protein I YP_003059845.1 TIGRFAM: general secretion pathway protein J; KEGG: xac:XAC0701 type II secretion system protein J YP_003059846.1 PFAM: general secretion pathway protein K; KEGG: xca:xccb100_0779 exported type II protein secretion system protein K YP_003059847.1 PFAM: general secretion pathway L; KEGG: spl:Spea_0152 general secretion pathway protein L YP_003059848.1 PFAM: general secretion pathway M protein; KEGG: sde:Sde_3571 hypothetical protein YP_003059849.1 PFAM: type II secretion system protein N; KEGG: ccs:CCNA_00182 type II secretion pathway protein N YP_003059850.1 KEGG: lhk:LHK_02663 hypothetical protein YP_003059851.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_B0681 AraC family transcriptional regulator YP_003059852.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: sfr:Sfri_2040 TonB-dependent receptor YP_003059853.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pzu:PHZ_c3137 M20/M25/M40 family peptidase YP_003059854.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: rlt:Rleg2_5155 DNA-directed DNA polymerase YP_003059855.1 KEGG: ara:Arad_9570 succinoglycan biosynthesis protein YP_003059856.1 KEGG: dal:Dalk_4028 SET-related domain protein YP_003059857.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: btr:Btr_1749 lysine/ornithine decarboxylase YP_003059858.1 PFAM: ApbE family lipoprotein; KEGG: sfu:Sfum_2693 ApbE family lipoprotein YP_003059859.1 KEGG: vsa:VSAL_II0118 membrane protein YP_003059860.1 KEGG: cja:CJA_1195 hypothetical protein YP_003059861.1 KEGG: cak:Caul_1114 hypothetical protein YP_003059862.1 TIGRFAM: TonB family protein; KEGG: sit:TM1040_0352 TonB-like YP_003059863.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: sit:TM1040_0351 hypothetical protein YP_003059864.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: mes:Meso_1437 biopolymer transporter ExbD/TolR YP_003059865.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sit:TM1040_0349 MotA/TolQ/ExbB proton channel YP_003059866.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: sit:TM1040_0347 TonB-dependent receptor, plug YP_003059867.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pat:Patl_1522 ECF subfamily RNA polymerase sigma-24 factor YP_003059868.1 PFAM: FecR protein; KEGG: sme:SMc04204 iron transport regulator transmembrane protein YP_003059869.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c2445 TonB-dependent receptor YP_003059870.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c2445 TonB-dependent receptor YP_003059871.1 KEGG: pzu:PHZ_c2443 hypothetical protein YP_003059872.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: atc:AGR_pAT_199 hypothetical protein YP_003059873.1 PFAM: protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bmt:BSUIS_A1235 hypothetical protein YP_003059874.1 PFAM: carboxyl transferase; KEGG: sil:SPO1094 propionyl-CoA carboxylase subunit beta YP_003059875.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; RimK domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: oan:Oant_2002 carbamoyl-phosphate synthase L chain ATP-binding YP_003059876.1 KEGG: ret:RHE_PB00157 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_003059877.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: azc:AZC_2108 transcriptional regulator YP_003059878.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES; KEGG: xac:XAC0201 alcohol dehydrogenase YP_003059879.1 PFAM: MmgE/PrpD family protein; KEGG: pat:Patl_1511 MmgE/PrpD YP_003059880.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pat:Patl_2719 short-chain dehydrogenase/reductase SDR YP_003059881.1 KEGG: pat:Patl_2720 hypothetical protein YP_003059882.1 PFAM: methyltransferase type 12; methyltransferase type 11; UbiE/COQ5 methyltransferase; KEGG: pat:Patl_2730 methyltransferase type 12 YP_003059883.1 KEGG: pat:Patl_2729 hypothetical protein YP_003059884.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase YP_003059885.1 PFAM: FAD linked oxidase; KEGG: pat:Patl_2767 FAD linked oxidase-like YP_003059886.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES; KEGG: hypothetical protein ; K07119 YP_003059887.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: hydantoinase/oxoprolinase YP_003059888.1 PFAM: hydantoinase B/oxoprolinase; KEGG: hypothetical protein YP_003059889.1 KEGG: bbt:BBta_1130 2,3-dimethylmalate lyase YP_003059890.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: leu2; 3-isopropylmalate dehydratase Leu2 (predicted); K01702 3-isopropylmalate dehydratase YP_003059891.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: bpy:Bphyt_6850 3-isopropylmalate dehydratase, large subunit YP_003059892.1 PFAM: polysaccharide deacetylase; KEGG: reh:H16_A1546 chitooligosaccharide deacetylase YP_003059893.1 PFAM: polysaccharide deacetylase; KEGG: pat:Patl_2733 polysaccharide deacetylase YP_003059894.1 PFAM: isochorismatase hydrolase; KEGG: pat:Patl_2732 isochorismatase hydrolase YP_003059895.1 PFAM: pyruvate carboxyltransferase; KEGG: pat:Patl_2762 pyruvate carboxyltransferase YP_003059896.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pat:Patl_2763 L-carnitine dehydratase/bile acid-inducible protein F YP_003059897.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: pat:Patl_2765 isopropylmalate isomerase large subunit YP_003059898.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: reh:H16_A1550 3-isopropylmalate dehydratase small subunit YP_003059899.1 KEGG: pat:Patl_2753 hypothetical protein YP_003059900.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_2766 alpha/beta hydrolase fold YP_003059901.1 KEGG: pat:Patl_3828 hypothetical protein YP_003059902.1 KEGG: pat:Patl_2731 hypothetical protein YP_003059904.1 PFAM: FAD linked oxidase; KEGG: pat:Patl_2767 FAD linked oxidase-like YP_003059905.1 PFAM: major facilitator superfamily MFS_1; KEGG: bac:BamMC406_3528 major facilitator transporter YP_003059906.1 KEGG: pat:Patl_2766 alpha/beta hydrolase fold YP_003059907.1 PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_C0615 major facilitator transporter YP_003059908.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0504 TonB-dependent receptor YP_003059909.1 KEGG: pla:Plav_0539 hypothetical protein YP_003059910.1 KEGG: pla:Plav_0538 hypothetical protein YP_003059912.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cti:RALTA_B1147 transcriptional regulator; CRP/Fnr family YP_003059913.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0484 TonB-dependent receptor YP_003059914.1 PFAM: citrate carrier protein; KEGG: pat:Patl_1118 citrate carrier protein YP_003059915.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mno:Mnod_3059 LysR family transcriptional regulator YP_003059916.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pla:Plav_0537 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003059917.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: pfo:Pfl01_2359 3-isopropylmalate dehydratase, small subunit YP_003059918.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_003059919.1 KEGG: psb:Psyr_4472 lipoprotein YP_003059920.1 PFAM: protein of unknown function DUF214; KEGG: vco:VC0395_A2132 hypothetical protein YP_003059921.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pen:PSEEN0581 ABC transporter ATP binding component YP_003059922.1 KEGG: aha:AHA_1708 GufA protein YP_003059923.1 KEGG: ryr1b; ryanodine receptor 1b (skeletal) YP_003059924.1 KEGG: RYR2; ryanodine receptor 2 (cardiac) ; K04962 ryanodine receptor 2 YP_003059927.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mmw:Mmwyl1_0991 salicylate 1-monooxygenase YP_003059928.1 KEGG: bid:Bind_2858 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; HpcH/HpaI aldolase YP_003059929.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: sil:SPO3031 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase YP_003059930.1 PFAM: glucokinase; KEGG: cja:CJA_1496 glucokinase YP_003059931.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_003059932.1 KEGG: bmi:BMEA_B0756 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_003059933.1 PFAM: GumN family protein; KEGG: cak:Caul_1668 GumN family protein YP_003059934.1 KEGG: pzu:PHZ_c3467 hypothetical protein YP_003059935.1 KEGG: pla:Plav_2131 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003059936.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ccs:CCNA_00188 ABC transporter ATP-binding protein YP_003059937.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_003059938.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis YP_003059939.1 PFAM: inositol monophosphatase; KEGG: cvi:CV_1577 inositol monophosphatase family protein YP_003059940.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: xcb:XC_1734 AsnC/Lrp family transcriptional regulator YP_003059941.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: cak:Caul_1231 acetylornithine and succinylornithine aminotransferase YP_003059942.1 PFAM: arginine N-succinyltransferase subunit beta; KEGG: cak:Caul_2202 arginine/ornithine succinyltransferase subunit YP_003059943.1 PFAM: protein of unknown function DUF1338; KEGG: rhi:NGR_c32930 hypothetical protein YP_003059944.1 TIGRFAM: succinylglutamic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: spc:Sputcn32_0647 succinylglutamic semialdehyde dehydrogenase YP_003059945.1 PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: ccs:CCNA_01677 carboxypeptidase G2 precursor YP_003059946.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_003059947.1 PFAM: arginine N-succinyltransferase subunit beta; KEGG: lpc:LPC_1135 arginine N-succinyltransferase, beta chain YP_003059948.1 TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: rpc:RPC_2477 2-dehydro-3-deoxyphosphooctonate aldolase YP_003059949.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: nwi:Nwi_1925 uracil-DNA glycosylase superfamily protein YP_003059950.1 PFAM: protein of unknown function DUF88; KEGG: ccs:CCNA_01619 cytosolic protein YP_003059951.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: pzu:PHZ_c1883 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_003059952.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas YP_003059953.1 KEGG: pzu:PHZ_c1880 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003059954.1 TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: mpo:Mpop_3390 orotate phosphoribosyltransferase YP_003059955.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_003059956.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: atc:AGR_C_1902 holo-[acyl-carrier protein] synthase YP_003059957.1 KEGG: ccs:CCNA_01630 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003059958.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_003059960.1 PFAM: glycosyl transferase family 2; KEGG: rfe:RF_0337 beta 1,4 glucosyltransferase YP_003059961.1 KEGG: pzu:PHZ_c1623 hypothetical protein YP_003059962.1 PFAM: protein of unknown function DUF502; KEGG: sit:TM1040_1340 hypothetical protein YP_003059963.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; KEGG: rec:RHECIAT_CH0002143 ATP-dependent DNA helicase protein YP_003059964.1 PFAM: protein of unknown function DUF339; KEGG: pzu:PHZ_c1620 hypothetical protein YP_003059965.1 KEGG: pzu:PHZ_c1619 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; helicase; DEAD/DEAH box helicase; SMART: DEAD-like helicase ; helicase YP_003059966.1 PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; KEGG: ccs:CCNA_01918 two-component response regulator YP_003059967.1 KEGG: pla:Plav_3254 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003059968.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: pzu:PHZ_c1711 ATP-dependent RNA helicase, DEAD/DEAH box family YP_003059969.1 PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; KEGG: rle:RL4111 transglutaminase domain-containing protein YP_003059970.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: rle:RL4110 hypothetical protein YP_003059971.1 PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; KEGG: rsp:RSP_0954 transglutaminase-like domain-containing protein YP_003059975.1 PFAM: fatty acid desaturase; KEGG: rpa:RPA1603 fatty acid desaturase YP_003059976.1 PFAM: protein of unknown function DUF81; KEGG: pla:Plav_1051 hypothetical protein YP_003059977.1 PFAM: thioesterase superfamily protein; KEGG: pag:PLES_04701 thioesterase YP_003059978.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpo:Mpop_5269 3-hydroxybutyrate dehydrogenase YP_003059979.1 KEGG: rsq:Rsph17025_3109 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase subunit beta; PFAM: coenzyme A transferase YP_003059980.1 KEGG: rsq:Rsph17025_3108 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit alpha; PFAM: coenzyme A transferase YP_003059981.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c2096 TonB-dependent receptor YP_003059982.1 PFAM: regulatory protein TetR; KEGG: pzu:PHZ_c2097 TetR family transcriptional regulator YP_003059983.1 PFAM: alpha/beta hydrolase fold; KEGG: pla:Plav_2860 alpha/beta hydrolase fold YP_003059984.1 PFAM: major facilitator superfamily MFS_1; KEGG: pla:Plav_0045 major facilitator transporter YP_003059985.1 PFAM: HpcH/HpaI aldolase; KEGG: ret:RHE_PC00060 citrate lyase subunit beta protein YP_003059986.1 PFAM: MaoC domain protein dehydratase; KEGG: rle:pRL100293 MaoC dehydratase family protein YP_003059987.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: cak:Caul_1876 carbamoyl-phosphate synthase L chain ATP-binding YP_003059988.1 PFAM: carboxyl transferase; KEGG: cak:Caul_1875 propionyl-CoA carboxylase YP_003059989.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: pzu:PHZ_c2406 isovaleryl CoA dehydrogenase YP_003059990.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: glo:Glov_3717 LysR family transcriptional regulator YP_003059991.1 KEGG: cak:Caul_1353 hypothetical protein YP_003059992.1 KEGG: ccs:CCNA_02361 polysaccharide biosynthesis protein CelD YP_003059993.1 PFAM: pseudouridine synthase; KEGG: amc:MADE_02367 ribosomal large subunit pseudouridine synthase E YP_003059994.1 KEGG: maq:Maqu_3672 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein YP_003059995.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ret:RHE_CH00625 two-component response regulator protein YP_003059996.1 PFAM: response regulator receiver; KEGG: rle:RL0678 two-component response regulator transcriptional regulatory protein YP_003059997.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: psa:PST_0278 S1 RNA binding domain protein YP_003059998.1 PFAM: protein of unknown function DUF885; KEGG: ilo:IL2537 hypothetical protein YP_003059999.1 PFAM: dehydrogenase E1 component; KEGG: rle:pRL100303 2-oxoisovalerate dehydrogenase YP_003060000.1 PFAM: transketolase; transketolase domain protein; KEGG: mlo:mll4472 2-oxoisovalerate dehydrogenase (subunit beta) YP_003060001.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: mlo:mll4471 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_003060002.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: rhi:NGR_c29920 dihydrolipoamide dehydrogenase YP_003060003.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: sde:Sde_2411 histidine kinase YP_003060004.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: mpo:Mpop_3054 exonuclease RNase T and DNA polymerase III YP_003060005.1 PFAM: metallophosphoesterase; KEGG: cak:Caul_0267 metallophosphoesterase YP_003060006.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: cak:Caul_0058 molybdopterin biosynthesis MoaE protein YP_003060007.1 PFAM: thiamineS protein; KEGG: prw:PsycPRwf_0221 molybdopterin converting factor, subunit 1 YP_003060009.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ccs:CCNA_00214 TonB-dependent receptor YP_003060010.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; aldehyde dehydrogenase; KEGG: mes:Meso_1325 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_003060011.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mmw:Mmwyl1_4392 AsnC family transcriptional regulator YP_003060012.1 KEGG: pin:Ping_3031 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_003060013.1 KEGG: pla:Plav_3115 beta-lactamase YP_003060014.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cak:Caul_2697 TatD family hydrolase YP_003060015.1 KEGG: sit:TM1040_3592 DNA polymerase III subunit delta' YP_003060016.1 KEGG: pzu:PHZ_c1605 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_003060017.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; beta-lactamase; Penicillin-binding protein 5 domain protein; KEGG: met:M446_6277 serine-type D-Ala-D-Ala carboxypeptidase YP_003060018.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: pla:Plav_3108 lipoprotein A YP_003060019.1 PFAM: type III restriction protein res subunit; KEGG: gur:Gura_4389 type III restriction enzyme, res subunit YP_003060020.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: gur:Gura_4390 site-specific DNA-methyltransferase (adenine-specific) YP_003060021.1 KEGG: psa:PST_0250 hypothetical protein YP_003060022.1 KEGG: hch:HCH_05618 hypothetical protein YP_003060024.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: pap:PSPA7_5144 excisionase YP_003060027.1 KEGG: psa:PST_1484 hypothetical protein YP_003060028.1 PFAM: secretion protein HlyD; KEGG: ccs:CCNA_00719 type I secretion adaptor protein HlyD YP_003060031.1 PFAM: ABC transporter; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: swp:swp_4866 toxin secretion ABC transporter ATP-binding subunit/permease protein YP_003060032.1 KEGG: dal:Dalk_0266 hypothetical protein YP_003060033.1 KEGG: rfr:Rfer_1357 hypothetical protein YP_003060035.1 PFAM: integrase family protein; KEGG: met:M446_3983 integrase family protein YP_003060037.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: tbd:Tbd_1283 molybdenum ABC transporter periplasmic binding protein YP_003060038.1 TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dps:DP0456 molybdenum ABC transporter permease (ModB) YP_003060039.1 KEGG: bmi:BMEA_B0094 molybdate ABC transporter ATP-binding protein; TIGRFAM: molybdate ABC transporter ATPase; PFAM: ABC transporter; TOBE domain protein; SMART: ATPase AAA YP_003060040.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: ccr:CC_1747 nucleoside triphosphate pyrophosphohydrolase YP_003060041.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: atu:Atu1451 GTP-binding protein HflX YP_003060042.1 Stimulates the elongation of poly(A) tails YP_003060043.1 PFAM: cation transporter; KEGG: plu:plu4399 potassium transporter YP_003060044.1 PFAM: TrkA-N domain protein; KEGG: pla:Plav_3126 potassium transporter peripheral membrane component YP_003060045.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: cak:Caul_2608 two component, sigma54 specific, fis family transcriptional regulator YP_003060046.1 PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: pzu:PHZ_c1729 nitrogen regulation protein NtrY YP_003060047.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; KEGG: cak:Caul_2606 nitrogen metabolism transcriptional regulator, NtrC, fis family YP_003060048.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: pzu:PHZ_c1731 nitrogen regulation protein NR(II) YP_003060049.1 PFAM: dihydrouridine synthase; KEGG: pzu:PHZ_c1732 tRNA-dihydrouridine synthase, nifR3 YP_003060050.1 TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: sit:TM1040_1364 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_003060051.1 PFAM: damage inducible protein CinA; KEGG: pla:Plav_3134 CinA domain-containing protein YP_003060052.1 PFAM: cyclase/dehydrase; KEGG: pzu:PHZ_c1736 hypothetical protein YP_003060053.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003060054.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ccs:CCNA_01807 acyl-acyl carrier protein synthetase YP_003060056.1 KEGG: pzu:PHZ_c2814 cytochrome C oxidase CcoN subunit; TIGRFAM: cytochrome C oxidase cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I YP_003060057.1 TIGRFAM: cytochrome C oxidase cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: atc:AGR_C_2832 cytochrome-c oxidase fixO chain YP_003060058.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: met:M446_3272 Cbb3-type cytochrome oxidase component YP_003060059.1 TIGRFAM: cytochrome C oxidase cbb3-type, subunit III; PFAM: cytochrome C class I; KEGG: ccs:CCNA_01470 cytochrome Cbb3 oxidase diheme subunit, membrane-bound CcoP YP_003060060.1 TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: pzu:PHZ_c2810 polyferredoxin YP_003060061.1 PFAM: FixH family protein; KEGG: pzu:PHZ_c2809 ferredoxin YP_003060062.1 TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: pzu:PHZ_c2808 cation-transporting ATPase, E1-E2 family YP_003060063.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: atu:Atu1527 nitrogen fixation protein FixS YP_003060064.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_1331 acetate--CoA ligase YP_003060065.1 KEGG: pzu:PHZ_c2823 hypothetical protein YP_003060066.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: abm:ABSDF3431 two-component response regulator YP_003060067.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: hch:HCH_05072 Na+/proline symporter YP_003060068.1 PFAM: Na+/solute symporter; KEGG: vvy:VV3124 sodium/solute symporter YP_003060069.1 KEGG: vfm:VFMJ11_2497 membrane protein YP_003060070.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: sit:TM1040_1096 dihydrolipoamide dehydrogenase YP_003060071.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: pzu:PHZ_c1741 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase YP_003060072.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_003060073.1 KEGG: pla:Plav_3141 pyruvate dehydrogenase (acetyl-transferring); TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_003060074.1 PFAM: septum formation initiator; KEGG: pla:Plav_3142 septum formation initiator YP_003060075.1 KEGG: sit:TM1040_0931 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase YP_003060076.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bcs:BCAN_A1813 50S ribosomal protein L32 YP_003060077.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003060078.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: mlo:mll0609 preprotein translocase subunit SecG YP_003060079.1 TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: oca:OCAR_6302 triose-phosphate isomerase YP_003060080.1 KEGG: pzu:PHZ_c1756 rotamase family protein YP_003060081.1 KEGG: rsq:Rsph17025_3101 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein YP_003060082.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cak:Caul_2776 anthranilate synthase component II YP_003060083.1 KEGG: oca:OCAR_6304 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like YP_003060084.1 PFAM: indole-3-glycerol phosphate synthase; KEGG: rpb:RPB_2798 indole-3-glycerol-phosphate synthase YP_003060085.1 Represses a number of genes involved in the response to DNA damage YP_003060086.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: cak:Caul_2785 ComEC/Rec2-related protein YP_003060087.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: cak:Caul_2786 glutamyl-tRNA synthetase YP_003060088.1 KEGG: avi:Avi_2563 citrate synthase; TIGRFAM: citrate synthase I; PFAM: citrate synthase YP_003060089.1 KEGG: pzu:PHZ_c1766 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_003060090.1 PFAM: protein of unknown function DUF1009; KEGG: cak:Caul_2792 hypothetical protein YP_003060091.1 KEGG: pzu:PHZ_c1768 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase YP_003060092.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: ccs:CCNA_01990 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_003060093.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: cak:Caul_2796 outer membrane chaperone Skp (OmpH) YP_003060094.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pzu:PHZ_c1772 outer membrane protein YP_003060095.1 PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: avi:Avi_2518 zinc metallopeptidase YP_003060096.1 KEGG: pla:Plav_3190 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003060097.1 PFAM: phosphatidate cytidylyltransferase; KEGG: bbt:BBta_4512 phosphatidate cytidylyltransferase YP_003060098.1 KEGG: bja:bll4857 undecaprenyl pyrophosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003060099.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: ara:Arad_2223 ribosome recycling factor YP_003060100.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: pla:Plav_3194 uridylate kinase YP_003060101.1 TIGRFAM: translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: pla:Plav_3195 translation elongation factor Ts YP_003060102.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: pzu:PHZ_c1780 30S ribosomal protein S2 YP_003060103.1 KEGG: ccs:CCNA_02003 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003060104.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cak:Caul_2810 ABC transporter YP_003060105.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pzu:PHZ_c1784 ABC-type transporter, involved in lipoprotein release, permease YP_003060106.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003060107.1 KEGG: pla:Plav_3209 hypothetical protein YP_003060108.1 KEGG: pzu:PHZ_c1787 lactoylglutathione lyase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_003060109.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: pzu:PHZ_c1788 metallo-beta-lactamase family protein YP_003060110.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_003060111.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: cak:Caul_2818 biotin--acetyl-CoA-carboxylase ligase YP_003060112.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bmc:BAbS19_I07790 NADH dehydrogenase subunit N YP_003060113.1 KEGG: pzu:PHZ_c1792 NADH dehydrogenase I, M subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003060114.1 KEGG: pzu:PHZ_c1793 NADH dehydrogenase I, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein YP_003060115.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: bja:bll4907 NADH dehydrogenase subunit K YP_003060116.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: ccs:CCNA_02019 NADH-quinone oxidoreductase chain J YP_003060117.1 Catalyzes the transfer of electrons from NADH to quinone YP_003060118.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: pzu:PHZ_c1797 NADH dehydrogenase I, H subunit YP_003060119.1 Catalyzes the transfer of electrons from NADH to quinone YP_003060120.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_003060122.1 KEGG: sit:TM1040_0746 NADH dehydrogenase subunit E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_003060123.1 KEGG: ccs:CCNA_02028 NTF2 enzyme family protein YP_003060124.1 Catalyzes the transfer of electrons from NADH to quinone YP_003060125.1 Catalyzes the transfer of electrons from NADH to quinone YP_003060126.1 KEGG: cak:Caul_2835 NADH dehydrogenase subunit B; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003060127.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mes:Meso_1022 NADH dehydrogenase subunit A YP_003060128.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: oan:Oant_2640 SsrA-binding protein YP_003060129.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: pzu:PHZ_c1890 dihydrodipicolinate synthase YP_003060130.1 PFAM: lytic transglycosylase catalytic; KEGG: pla:Plav_2861 lytic transglycosylase catalytic YP_003060131.1 PFAM: methylmalonyl-CoA mutase; KEGG: bbt:BBta_3023 methylmalonyl-CoA mutase small subunit (MCM-beta) YP_003060132.1 KEGG: nha:Nham_2638 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_003060133.1 KEGG: swd:Swoo_4306 hypothetical protein YP_003060134.1 KEGG: cak:Caul_1655 hypothetical protein YP_003060135.1 TIGRFAM: LAO/AO transporter ATPase; PFAM: ArgK protein; KEGG: ccs:CCNA_02568 LAO/AO transporter kinase YP_003060136.1 KEGG: oan:Oant_2419 NADH-quinone oxidoreductase, E subunit YP_003060137.1 PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_3060 outer membrane protein and related peptidoglycan-associated (LipO)proteins YP_003060138.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ccs:CCNA_01245 23S rRNA methyltransferase YP_003060139.1 KEGG: mlo:mlr3209 SAM dependent methyltransferase YP_003060140.1 KEGG: ppg:PputGB1_4146 SH3 type 3 domain-containing protein YP_003060141.1 PFAM: Na+ dependent nucleoside transporter domain protein; nucleoside recognition domain protein; Na+ dependent nucleoside transporter; KEGG: pzu:PHZ_c0886 sodium dependent nucleoside transporter YP_003060142.1 PFAM: UspA domain protein; KEGG: avi:Avi_5068 universal stress protein YP_003060143.1 PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: rsq:Rsph17025_3460 UspA domain-containing protein YP_003060144.1 KEGG: pla:Plav_3269 hypothetical protein YP_003060145.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: avi:Avi_1886 bacterioferritin comigratory protein YP_003060146.1 PFAM: peptidase M23; KEGG: pzu:PHZ_c1837 peptidase, M23/M37 family YP_003060147.1 PFAM: protein of unknown function DUF583; KEGG: pla:Plav_3273 hypothetical protein YP_003060148.1 PFAM: protein of unknown function DUF329; KEGG: cak:Caul_3582 hypothetical protein YP_003060149.1 KEGG: pzu:PHZ_c2193 hypothetical protein YP_003060150.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: msl:Msil_0757 maf protein YP_003060151.1 TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: cak:Caul_3585 translation initiation factor IF-1 YP_003060152.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: met:M446_2636 protein tyrosine phosphatase YP_003060153.1 PFAM: conserved hypothetical protein; KEGG: pla:Plav_0522 hypothetical protein YP_003060154.1 KEGG: pzu:PHZ_c2199 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase YP_003060155.1 KEGG: pzu:PHZ_c2200 hypothetical protein YP_003060156.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003060158.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: sit:TM1040_3147 (2Fe-2S)-binding YP_003060159.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: sit:TM1040_3146 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_003060160.1 KEGG: pat:Patl_2603 hypothetical protein YP_003060162.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_0574 transcriptional regulatory protein YP_003060163.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cak:Caul_2384 glycerophosphoryl diester phosphodiesterase YP_003060164.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mpo:Mpop_1216 methyl-accepting chemotaxis sensory transducer YP_003060165.1 KEGG: rlt:Rleg2_1999 hypothetical protein YP_003060166.1 PFAM: phosphate-selective porin O and P; KEGG: pat:Patl_3313 phosphate-selective porin O and P YP_003060167.1 KEGG: sat:SYN_01098 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003060168.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_4622 glycosyl transferase group 1 YP_003060169.1 PFAM: glycosyl transferase group 1; KEGG: mpt:Mpe_A1057 glycosyltransferase-like protein YP_003060171.1 PFAM: glycosyl transferase group 1; KEGG: atc:AGR_L_34GM hypothetical protein YP_003060172.1 KEGG: vha:VIBHAR_02223 hypothetical protein YP_003060173.1 KEGG: dac:Daci_2082 hypothetical protein YP_003060174.1 PFAM: metallophosphoesterase; KEGG: oan:Oant_3006 metallophosphoesterase YP_003060175.1 KEGG: vsp:VS_0902 ATPase YP_003060176.1 PFAM: protein of unknown function DUF323; peptidoglycan-binding protein; KEGG: mno:Mnod_5333 protein of unknown function DUF323 YP_003060177.1 PFAM: polysaccharide export protein; KEGG: pzu:PHZ_c1149 polysaccharide export protein YP_003060178.1 KEGG: noc:Noc_1497 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_003060179.1 KEGG: noc:Noc_1499 hypothetical protein YP_003060180.1 PFAM: O-antigen polymerase; KEGG: eba:ebA5975 binding-protein-dependent transporter protein YP_003060181.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ecw:EcE24377A_2345 GDP-L-fucose synthetase YP_003060182.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: sit:TM1040_1482 GDP-mannose 4,6-dehydratase YP_003060183.1 KEGG: ccs:CCNA_02037 ATP-dependent endopeptidase Lon; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; AAA ATPase YP_003060184.1 KEGG: pla:Plav_3231 ATP-dependent protease ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA; zinc finger C4 domain protein; AAA ATPase central domain protein; SMART: ATPase AAA YP_003060185.1 PFAM: peptidase S14 ClpP; KEGG: mes:Meso_1169 ATP-dependent Clp protease proteolytic subunit YP_003060186.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_003060187.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: pzu:PHZ_c1576 YjeF family protein YP_003060188.1 PFAM: nitrogen regulatory protein P-II; KEGG: cak:Caul_2852 nitrogen regulatory protein P-II YP_003060189.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: avi:Avi_2375 glutamine synthetase YP_003060190.1 KEGG: swd:Swoo_3324 hypothetical protein YP_003060191.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003060192.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: pla:Plav_1922 NAD-dependent epimerase/dehydratase YP_003060193.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003060194.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: tgr:Tgr7_1148 serine/threonine dehydratase YP_003060196.1 PFAM: Fmu (Sun) domain protein; KEGG: cak:Caul_2215 Fmu (Sun) domain-containing protein YP_003060198.1 KEGG: predicted protein YP_003060199.1 KEGG: rpd:RPD_2264 inositol-5-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; hypothetical protein; SMART: hypothetical protein YP_003060200.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: bov:BOV_A0642 ribosomal RNA large subunit methyltransferase J YP_003060201.1 PFAM: Ppx/GppA phosphatase; KEGG: ccs:CCNA_01686 exopolyphosphatase YP_003060202.1 PFAM: OmpA/MotB domain protein; KEGG: pzu:PHZ_c0337 OmpA family protein YP_003060204.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: ccr:CC_0014 molybdenum cofactor biosynthesis protein C YP_003060205.1 TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis protein; PFAM: molybdopterin binding domain; KEGG: pzu:PHZ_c0277 molybdopterin biosynthesis protein B YP_003060207.1 KEGG: cak:Caul_2615 hypothetical protein YP_003060208.1 KEGG: sil:SPO2287 autoinducer synthesis protein YP_003060209.1 KEGG: ccs:CCNA_02273 glutathione peroxidase YP_003060213.1 KEGG: azo:azo0200 exonuclease SbcC YP_003060214.1 PFAM: patatin; KEGG: mes:Meso_0548 patatin YP_003060215.1 KEGG: smd:Smed_1232 hypothetical protein YP_003060216.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion YP_003060217.1 KEGG: lch:Lcho_1614 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003060218.1 PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0424 glycosyl transferase YP_003060219.1 KEGG: pzu:PHZ_c2771 hypothetical protein YP_003060220.1 PFAM: protein of unknown function DUF599; KEGG: smd:Smed_1036 hypothetical protein YP_003060221.1 KEGG: pat:Patl_4271 hypothetical protein YP_003060222.1 KEGG: pat:Patl_4270 Zn-dependent aminopeptidase YP_003060223.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dal:Dalk_1662 methyltransferase type 12 YP_003060224.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pla:Plav_1103 NAD+ synthetase YP_003060225.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mes:Meso_0832 DegT/DnrJ/EryC1/StrS aminotransferase YP_003060226.1 PFAM: oxidoreductase domain protein; KEGG: pzu:PHZ_c1982 oxidoreductase, Gfo/Idh/MocA family YP_003060227.1 KEGG: ccs:CCNA_02098 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003060228.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: mca:MCA0532 DNA-binding protein HU-beta YP_003060229.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: pzu:PHZ_c1985 MATE efflux family protein YP_003060230.1 KEGG: pzu:PHZ_c1986 phospho-2-dehydro-3-deoxyheptonate aldolase, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_003060232.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_4754 cobyrinic acid ac-diamide synthase YP_003060233.1 TIGRFAM: glutathione-disulfide reductase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pzu:PHZ_c1988 glutathione reductase YP_003060234.1 KEGG: mrd:Mrad2831_2699 ribose 5-phosphate isomerase; TIGRFAM: ribose 5-phosphate isomerase; PFAM: ribose 5-phosphate isomerase YP_003060235.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_003060236.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: cak:Caul_3547 phosphoglycolate phosphatase YP_003060238.1 PFAM: aldose 1-epimerase; KEGG: cak:Caul_0628 aldose 1-epimerase YP_003060239.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: xca:xccb100_1019 LacI family transcriptional regulator YP_003060240.1 PFAM: protein of unknown function DUF885; KEGG: xom:XOO_2975 hypothetical protein YP_003060241.1 PFAM: ETC complex I subunit conserved region; KEGG: ccs:CCNA_01453 electron transport complex I subunit, NADH-ubiquinone oxidoreductase YP_003060242.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rsh:Rsph17029_0217 cobalamin (vitamin B12) biosynthesis CbiX protein YP_003060243.1 PFAM: protein of unknown function DUF192; KEGG: ccs:CCNA_01452 hypothetical protein YP_003060244.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pzu:PHZ_c1639 cold-shock DNA-binding domain protein YP_003060245.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: ccs:CCNA_01450 single-stranded-DNA-specific exonuclease RecJ YP_003060246.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_003060247.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: cak:Caul_3015 homoserine dehydrogenase YP_003060248.1 PFAM: aminotransferase class I and II; KEGG: xau:Xaut_3522 aminotransferase YP_003060250.1 PFAM: poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: cak:Caul_3018 poly(R)-hydroxyalkanoic acid synthase, class I YP_003060252.1 KEGG: sde:Sde_3207 hypothetical protein YP_003060253.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate YP_003060254.1 KEGG: sit:TM1040_0420 glycosyltransferase involved in cell wall biogenesis YP_003060255.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sit:TM1040_0418 alpha amylase, catalytic region YP_003060256.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ccs:CCNA_02368 alpha-glucosidase YP_003060257.1 KEGG: mlo:mlr7591 glycosyl hydrolase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003060258.1 KEGG: mlo:mlr7589 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1 YP_003060259.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_003060260.1 KEGG: ara:Arad_3868 glycogen phosphorylase protein; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003060261.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_003060262.1 forms a direct contact with the tRNA during translation YP_003060263.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_003060264.1 KEGG: hypothetical protein YP_003060265.1 PFAM: cytochrome oxidase assembly; KEGG: rpc:RPC_2687 cytochrome oxidase assembly YP_003060266.1 KEGG: cak:Caul_3030 hypothetical protein YP_003060267.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: rsq:Rsph17025_1868 ABC transporter related YP_003060268.1 PFAM: conserved hypothetical protein; KEGG: pzu:PHZ_c1929 hypothetical protein YP_003060269.1 PFAM: Excalibur domain protein; KEGG: ppw:PputW619_5168 hypothetical protein YP_003060270.1 KEGG: ilo:IL1495 hypothetical protein YP_003060271.1 PFAM: protein of unknown function DUF1593; KEGG: sde:Sde_0565 signal peptide and transmembrane prediction YP_003060272.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: mch:Mchl_5220 glutamyl-tRNA synthetase YP_003060273.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: HLA8; high light-induced nuclease YP_003060274.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tgr:Tgr7_1511 propionate--CoA ligase YP_003060276.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: oca:OCAR_5987 penicillin-binding protein 1A YP_003060277.1 KEGG: ccs:CCNA_01952 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003060278.1 KEGG: ccs:CCNA_01954 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003060279.1 PFAM: peptidase M48 Ste24p; KEGG: ccs:CCNA_01955 zinc metalloprotease YP_003060280.1 PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_4209 hypothetical protein YP_003060281.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_003060282.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: glo:Glov_0035 thiamine biosynthesis protein ThiS YP_003060283.1 KEGG: pzu:PHZ_c1849 3-dehydroquinate dehydratase, type II; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II YP_003060284.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: atc:AGR_C_2454 biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) YP_003060285.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; carbamoyl-phosphate synthetase large chain domain protein; KEGG: bcs:BCAN_A0919 acetyl-CoA carboxylase biotin carboxylase subunit YP_003060286.1 KEGG: msl:Msil_0187 hypothetical protein YP_003060287.1 PFAM: hypothetical protein; KEGG: pla:Plav_3296 hypothetical protein YP_003060288.1 PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: pzu:PHZ_c1854 NADH-ubiquinone oxidoreductase YP_003060289.1 KEGG: cak:Caul_2560 ribonucleotide reductase-related protein YP_003060290.1 PFAM: pentapeptide repeat protein; KEGG: cak:Caul_2559 pentapeptide repeat-containing protein YP_003060291.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: pzu:PHZ_c1857 aspartyl-tRNA synthetase YP_003060292.1 KEGG: rle:RL1603 ribonuclease D; TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease YP_003060293.1 KEGG: neu:NE0972 hypothetical protein YP_003060294.1 PFAM: Ppx/GppA phosphatase; KEGG: cak:Caul_2549 Ppx/GppA phosphatase YP_003060295.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_003060296.1 KEGG: rpa:RPA3049 hypothetical protein YP_003060297.1 KEGG: pla:Plav_3330 hypothetical protein YP_003060298.1 KEGG: ccs:CCNA_01775 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003060299.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: oca:OCAR_6344 phosphoribosylglycinamide formyltransferase YP_003060301.1 PFAM: beta-lactamase; KEGG: bbt:BBta_6049 beta-lactamase YP_003060302.1 PFAM: beta-lactamase; KEGG: pzu:PHZ_c0734 beta-lactamase YP_003060303.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: ccs:CCNA_02956 rhodanese-related sulfurtransferase YP_003060304.1 PFAM: protein of unknown function DUF81; KEGG: cak:Caul_2471 hypothetical protein YP_003060305.1 PFAM: protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: azo:azo0052 hypothetical protein YP_003060306.1 KEGG: pzu:PHZ_c1820 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003060307.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: cak:Caul_2532 DNA polymerase III subunit chi YP_003060308.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ccs:CCNA_01763 cytosol aminopeptidase YP_003060309.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pzu:PHZ_c1705 hypothetical protein YP_003060310.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pzu:PHZ_c1706 hypothetical protein YP_003060311.1 PFAM: organic solvent tolerance protein; OstA family protein; KEGG: ccs:CCNA_01760 organic solvent tolerance protein YP_003060312.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pzu:PHZ_c1708 peptidyl-prolyl cis-trans isomerase family protein YP_003060313.1 KEGG: pzu:PHZ_c1709 pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA YP_003060314.1 KEGG: atc:AGR_C_2042 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase YP_003060315.1 KEGG: smd:Smed_0759 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_003060316.1 PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: cak:Caul_2522 hypothetical protein YP_003060317.1 PFAM: aminodeoxychorismate lyase; KEGG: pla:Plav_3356 aminodeoxychorismate lyase YP_003060318.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: ccs:CCNA_01750 3-oxoacyl-(acyl-carrier-protein) synthase YP_003060319.1 carries the fatty acid chain in fatty acid biosynthesis YP_003060320.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ccs:CCNA_01747 3-oxoacyl-(acyl-carrier protein) reductase YP_003060321.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: pzu:PHZ_c1557 malonyl CoA-acyl carrier protein transacylase YP_003060322.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: ccs:CCNA_01741 30S ribosomal protein S6P YP_003060323.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: mes:Meso_1917 30S ribosomal protein S18 YP_003060324.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: cak:Caul_2510 50S ribosomal protein L9 YP_003060325.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: ccs:CCNA_01737 replicative DNA helicase YP_003060326.1 KEGG: atc:AGR_L_3051 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003060327.1 PFAM: protein of unknown function DUF140; KEGG: cak:Caul_1577 hypothetical protein YP_003060328.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pla:Plav_3484 ABC transporter YP_003060329.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_003060330.1 PFAM: colicin V production protein; KEGG: cak:Caul_2503 colicin V production protein YP_003060331.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: phosphoribosyltransferase; glutamine amidotransferase class-II; KEGG: oca:OCAR_6382 amidophosphoribosyltransferase YP_003060332.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mes:Meso_0981 short-chain dehydrogenase/reductase SDR YP_003060333.1 KEGG: met:M446_4569 phosphoenolpyruvate carboxylase YP_003060334.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_003060335.1 PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; KEGG: cak:Caul_2497 pyrrolo-quinoline quinone YP_003060336.1 KEGG: azc:AZC_4330 hypothetical protein YP_003060337.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_003060338.1 PFAM: NnrUfamily protein; KEGG: mpo:Mpop_4523 NnrU family protein YP_003060339.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: scl:sce6423 MarR family transcriptional regulator YP_003060340.1 PFAM: protein of unknown function DUF159; KEGG: tmz:Tmz1t_2360 protein of unknown function DUF159 YP_003060341.1 KEGG: noc:Noc_1207 hypothetical protein YP_003060342.1 KEGG: noc:Noc_1208 hypothetical protein YP_003060343.1 KEGG: noc:Noc_1209 hypothetical protein YP_003060344.1 TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: ccr:CC_2425 HfsE YP_003060345.1 PFAM: glycosyl transferase family 2; KEGG: cak:Caul_1537 glycosyl transferase YP_003060346.1 PFAM: polysaccharide deacetylase; KEGG: cak:Caul_1536 polysaccharide deacetylase YP_003060347.1 PFAM: glycosyl transferase family 2; KEGG: cak:Caul_1352 glycosyl transferase YP_003060348.1 KEGG: ccs:CCNA_02512 polysaccharide autokinase-related protein HfsB YP_003060349.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: ccr:CC_2431 hypothetical protein YP_003060350.1 PFAM: polysaccharide export protein; KEGG: ccs:CCNA_02514 polysaccharide secretin protein HfsD YP_003060351.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: oca:OCAR_5804 Sel1 YP_003060353.1 PFAM: O-antigen polymerase; KEGG: cak:Caul_1595 O-antigen polymerase YP_003060354.1 PFAM: glycoside hydrolase family 5; KEGG: cak:Caul_1283 glycoside hydrolase family protein YP_003060355.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: cak:Caul_0182 2OG-Fe(II) oxygenase YP_003060356.1 PFAM: class I peptide chain release factor; KEGG: bid:Bind_0245 class I peptide chain release factor YP_003060357.1 KEGG: hypothetical protein YP_003060358.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003060359.1 PFAM: aldo/keto reductase; KEGG: rpe:RPE_3420 2,5-didehydrogluconate reductase YP_003060361.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003060362.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pmy:Pmen_3076 GCN5-related N-acetyltransferase YP_003060363.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_003060365.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: azc:AZC_2840 Holliday junction resolvase YP_003060366.1 KEGG: mno:Mnod_6527 esterase YP_003060367.1 PFAM: protein of unknown function DUF205; KEGG: rpb:RPB_2422 glycerol-3-phosphate acyltransferase PlsY YP_003060368.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pla:Plav_2833 DNA protecting protein DprA YP_003060369.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_003060370.1 KEGG: pla:Plav_2830 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003060371.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_2625 NUDIX hydrolase YP_003060372.1 TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: cak:Caul_1499 50S ribosomal protein L33 YP_003060373.1 KEGG: cak:Caul_1497 response regulator PleD; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003060374.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pla:Plav_2814 response regulator receiver YP_003060375.1 PFAM: endoribonuclease L-PSP; KEGG: cak:Caul_3144 endoribonuclease L-PSP YP_003060376.1 PFAM: protein of unknown function DUF482; KEGG: pla:Plav_2802 hypothetical protein YP_003060377.1 PFAM: histidine triad (HIT) protein; KEGG: cak:Caul_3139 histidine triad (HIT) protein YP_003060378.1 PFAM: glutaredoxin; glutathione S-transferase domain; KEGG: mfa:Mfla_0507 glutathione S-transferase-like protein YP_003060379.1 PFAM: glucose sorbosone dehydrogenase; KEGG: sml:Smlt0451 dehydrogenase YP_003060380.1 PFAM: FRG domain protein; KEGG: bgl:bglu_1g17210 hypothetical protein YP_003060381.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: mfa:Mfla_2319 rhodanese-like protein YP_003060382.1 KEGG: pzu:PHZ_c1302 ATP-dependent Clp protease ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase AAA; Clp domain protein; SMART: ATPase AAA YP_003060383.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: smd:Smed_1116 ATP-dependent Clp protease adaptor protein ClpS YP_003060384.1 KEGG: rsp:RSP_2908 hypothetical protein YP_003060385.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ccs:CCNA_02243 D-alanyl-D-alanine serine-type carboxypeptidase YP_003060386.1 PFAM: acyltransferase 3; KEGG: bid:Bind_2124 acyltransferase 3 YP_003060387.1 PFAM: carboxymuconolactone decarboxylase; KEGG: kpe:KPK_5444 carboxymuconolactone decarboxylase family protein YP_003060388.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rpb:RPB_1569 MerR family transcriptional regulator YP_003060389.1 KEGG: sde:Sde_2315 hypothetical protein YP_003060390.1 PFAM: ATPase MipZ; KEGG: rsp:RSP_1042 hypothetical protein YP_003060391.1 KEGG: hypothetical protein YP_003060392.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_003060393.1 PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH02213 hypothetical protein YP_003060395.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: pzu:PHZ_c1289 enoyl-CoA hydratase/isomerase family protein YP_003060396.1 KEGG: pzu:PHZ_c1288 hypothetical protein; PFAM: patatin; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003060397.1 PFAM: glycoside hydrolase family 24; KEGG: pzu:PHZ_c1283 lysozyme family protein YP_003060398.1 KEGG: sit:TM1040_1904 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; hypothetical protein; MgtE integral membrane region; SMART: hypothetical protein YP_003060399.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; citrate transporter; KEGG: pmy:Pmen_2781 anion transporter YP_003060400.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF785; protein of unknown function DUF201; KEGG: sit:TM1040_0769 30S ribosomal protein S6P modification protein YP_003060401.1 KEGG: dat:HRM2_13000 MgtE1; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; hypothetical protein; SMART: hypothetical protein YP_003060402.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vco:VC0395_0291 spermidine N1-acetyltransferase YP_003060403.1 PFAM: MscS Mechanosensitive ion channel; KEGG: smd:Smed_1800 MscS mechanosensitive ion channel YP_003060404.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sil:SPOA0218 magnesium transporter CorA family protein YP_003060406.1 KEGG: cak:Caul_1205 hypothetical protein YP_003060407.1 KEGG: rpe:RPE_1684 PGAP1 family protein YP_003060408.1 PFAM: entericidin EcnAB; KEGG: bbr:BB0451 entericidin A anti-toxin precursor YP_003060410.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: avi:Avi_6004 hypothetical protein YP_003060411.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: pzu:PHZ_c1367 probable exopolysaccharide synthesis protein YP_003060412.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_003060413.1 KEGG: pzu:PHZ_c0302 hypothetical protein YP_003060414.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ccs:CCNA_03589 RNA polymerase ECF-type sigma factor SigT YP_003060415.1 PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ccs:CCNA_03588 two-component sensor histidine kinase YP_003060416.1 PFAM: ferritin; KEGG: bpy:Bphyt_0714 ferritin Dps family protein YP_003060417.1 KEGG: abo:ABO_2552 hypothetical protein YP_003060418.1 PFAM: metallophosphoesterase; KEGG: cak:Caul_0083 metallophosphoesterase YP_003060419.1 PFAM: diacylglycerol kinase; KEGG: msl:Msil_2335 diacylglycerol kinase YP_003060420.1 PFAM: protein of unknown function DUF1328; KEGG: pat:Patl_4137 hypothetical protein YP_003060421.1 KEGG: har:HEAR1248 hypothetical protein YP_003060422.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: ccs:CCNA_02257 FliN family protein YP_003060423.1 KEGG: pzu:PHZ_c1280 lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_003060424.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; RimK domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: pzu:PHZ_c1278 propionyl-CoA carboxylase, alpha subunit YP_003060425.1 PFAM: ion transporter; KEGG: mlo:mll6635 hypothetical protein YP_003060426.1 KEGG: ret:RHE_CH02926 hypothetical protein YP_003060427.1 KEGG: pin:Ping_2412 hypothetical protein YP_003060428.1 PFAM: carboxyl transferase; KEGG: pzu:PHZ_c1274 propionyl-CoA carboxylase subunit beta YP_003060429.1 KEGG: smt:Smal_3133 hypothetical protein YP_003060430.1 PFAM: ATP12 ATPase; KEGG: ccs:CCNA_02056 chaperone, ATP12 family protein YP_003060431.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pla:Plav_2768 HAD family hydrolase YP_003060432.1 KEGG: pla:Plav_2767 RluA family pseudouridine synthase; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003060433.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_003060434.1 PFAM: pseudouridine synthase; KEGG: cak:Caul_1654 pseudouridine synthase YP_003060436.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: ccs:CCNA_01342 ATPase, AAA family YP_003060437.1 KEGG: bcs:BCAN_A1229 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003060438.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: nwi:Nwi_1389 50S ribosomal protein L17 YP_003060439.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_003060440.1 PFAM: ribosomal protein S11; KEGG: pla:Plav_2759 ribosomal protein S11 YP_003060441.1 PFAM: ribosomal protein S13; KEGG: azc:AZC_2532 ribosomal protein S13 YP_003060442.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_003060443.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: mes:Meso_1658 preprotein translocase subunit SecY YP_003060444.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: rsq:Rsph17025_2515 50S ribosomal protein L15 YP_003060445.1 TIGRFAM: ribosomal protein L30; KEGG: cak:Caul_1632 ribosomal protein L30 YP_003060446.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_003060447.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: ara:Arad_1994 ribosomal protein L18 YP_003060448.1 PFAM: ribosomal protein L6; KEGG: rpe:RPE_3571 50S ribosomal protein L6 YP_003060449.1 PFAM: ribosomal protein S8; KEGG: rsh:Rsph17029_0375 30S ribosomal protein S8 YP_003060450.1 PFAM: ribosomal protein S14; KEGG: pzu:PHZ_c1243 ribosomal protein S14 YP_003060451.1 PFAM: ribosomal protein L5; KEGG: ccs:CCNA_01318 LSU ribosomal protein L5P YP_003060452.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_003060453.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: rpc:RPC_3438 50S ribosomal protein L14 YP_003060454.1 PFAM: ribosomal protein S17; KEGG: pzu:PHZ_c1239 ribosomal protein S17 YP_003060455.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: mlo:msr0303 50S ribosomal protein L29 YP_003060456.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_003060457.1 KEGG: btr:Btr_1512 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; ribosomal protein S3 domain; SMART: KH domain protein YP_003060458.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_003060459.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: bcs:BCAN_A1252 30S ribosomal protein S19 YP_003060460.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_003060461.1 PFAM: ribosomal protein L25/L23; KEGG: cak:Caul_1616 50S ribosomal protein L23 YP_003060462.1 PFAM: ribosomal protein L4/L1e; KEGG: cak:Caul_1615 50S ribosomal protein L4 YP_003060463.1 PFAM: ribosomal protein L3; KEGG: sit:TM1040_0246 50S ribosomal protein L3 YP_003060464.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: pzu:PHZ_c1229 30S ribosomal protein S10 YP_003060465.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: sit:TM1040_2434 elongation factor Tu YP_003060466.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: mes:Meso_1681 elongation factor G YP_003060467.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: bhe:BH10550 30S ribosomal protein S7 YP_003060468.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: pzu:PHZ_c1224 30S ribosomal protein S12 YP_003060469.1 KEGG: pla:Plav_2730 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_003060470.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_003060471.1 TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; KEGG: bov:BOV_1206 50S ribosomal protein L7/L12 YP_003060472.1 PFAM: ribosomal protein L10; KEGG: pzu:PHZ_c1216 50S ribosomal protein L10 YP_003060473.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: pla:Plav_2726 ribosomal protein L1 YP_003060474.1 KEGG: pla:Plav_2725 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_003060475.1 KEGG: pzu:PHZ_c1212 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein YP_003060476.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: mno:Mnod_1893 preprotein translocase, SecE subunit YP_003060477.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: sit:TM1040_2114 hypothetical protein YP_003060478.1 PFAM: protein of unknown function DUF403; KEGG: oan:Oant_3525 protein of unknown function DUF403 YP_003060479.1 PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; KEGG: smd:Smed_4480 transglutaminase domain-containing protein YP_003060480.1 PFAM: 20S proteasome A and subunit betas; KEGG: sit:TM1040_2117 20S proteasome, A and subunit betas YP_003060481.1 KEGG: sbm:Shew185_1697 hypothetical protein YP_003060482.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: ccs:CCNA_02457 nitropropane dioxygenase/trans-enoyl-CoA reductase family protein YP_003060483.1 PFAM: polysaccharide export protein; KEGG: pzu:PHZ_c2166 periplasmic protein involved in polysaccharide export YP_003060484.1 PFAM: glycosyl transferase family 2; KEGG: avi:Avi_5934 succinoglycan biosynthesis glycosyltransferase YP_003060486.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mrd:Mrad2831_6397 short-chain dehydrogenase/reductase SDR YP_003060487.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ccs:CCNA_01297 23S rRNA Gm2251 methyltransferase YP_003060488.1 PFAM: glycosyl transferase family 2; KEGG: rsq:Rsph17025_1960 glycosyl transferase YP_003060489.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_003060490.1 KEGG: ccr:CC_1479 hypothetical protein YP_003060491.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: pla:Plav_1906 non-specific protein-tyrosine kinase YP_003060492.1 KEGG: cak:Caul_4817 hypothetical protein YP_003060493.1 PFAM: glycosyl transferase family 2; KEGG: atc:AGR_L_1609 glucosyltransferase protein YP_003060494.1 PFAM: O-antigen polymerase; KEGG: rsh:Rsph17029_1208 O-antigen polymerase YP_003060495.1 PFAM: glycoside hydrolase family 16; KEGG: atc:AGR_L_1600 endo-1,3-1,4-beta-glycanase ExoK precursor (succinoglycan biosynthesis protein ExoK) YP_003060496.1 PFAM: glycosyl transferase family 2; KEGG: mpt:Mpe_A0722 succinoglycan biosynthesis protein ExoA YP_003060497.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: rpc:RPC_4741 cobyrinic acid a,c-diamide synthase YP_003060498.1 PFAM: ferric-uptake regulator; KEGG: mes:Meso_3940 ferric uptake regulator, Fur family YP_003060499.1 PFAM: phosphoglucose isomerase (PGI); KEGG: ccs:CCNA_00222 glucose-6-phosphate isomerase/glucose-6 phosphate 1-epimerase YP_003060500.1 PFAM: cytochrome C class I; KEGG: pzu:PHZ_c1188 cytochrome c family protein YP_003060501.1 KEGG: rpb:RPB_4107 hypothetical protein YP_003060502.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pzu:PHZ_c1180 predicted sugar kinase YP_003060503.1 KEGG: cak:Caul_1718 hypothetical protein YP_003060505.1 KEGG: pzu:PHZ_c1177 hypothetical protein YP_003060506.1 KEGG: rpc:RPC_3111 hypothetical protein YP_003060507.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: cak:Caul_1223 response regulator receiver YP_003060508.1 PFAM: FAD dependent oxidoreductase; KEGG: mpo:Mpop_0580 glycine oxidase ThiO YP_003060510.1 PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: ccs:CCNA_02164 leucine dehydrogenase YP_003060511.1 KEGG: myosin-like protein YP_003060512.1 PFAM: alpha/beta hydrolase fold; KEGG: pzu:PHZ_c0893 lysophospholipase YP_003060513.1 PFAM: peptidase M28; KEGG: sml:Smlt0418 aminopeptidase YP_003060514.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mrd:Mrad2831_5022 cold-shock DNA-binding domain-containing protein YP_003060516.1 TIGRFAM: ferrous iron transporter B; small GTP-binding protein; PFAM: Ferrous iron transporter B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: ccs:CCNA_00749 ferrous iron transporter B YP_003060517.1 PFAM: FeoA family protein; KEGG: ccs:CCNA_00748 ferrous iron transporter A YP_003060518.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: pat:Patl_3062 CDP-glucose 4,6-dehydratase YP_003060519.1 KEGG: oca:OCAR_4621 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003060520.1 KEGG: rsq:Rsph17025_2179 SAF domain-containing protein YP_003060521.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase; KEGG: rsq:Rsph17025_2947 glucose-1-phosphate cytidylyltransferase YP_003060522.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ecx:EcHS_A2184 polysaccharide biosynthesis protein YP_003060523.1 PFAM: glycosyl transferase family 2; KEGG: tcx:Tcr_1684 glycosyl transferase YP_003060524.1 PFAM: glycosyl transferase group 1; KEGG: rhi:NGR_b21310 colanic acid biosynthesis glycosyl transferase YP_003060525.1 PFAM: glycosyl transferase family 2; KEGG: rlt:Rleg2_2970 glycosyl transferase family 2 YP_003060526.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0844 cell wall biosynthesis glycosyltransferase-like protein YP_003060527.1 PFAM: polysaccharide biosynthesis protein; KEGG: sme:SM_b21050 PST type surface saccharide translocase, ExoT protein YP_003060528.1 PFAM: aldo/keto reductase; KEGG: mmw:Mmwyl1_2141 aldo/keto reductase YP_003060529.1 KEGG: eba:ebA4008 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_003060530.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: mms:mma_1088 cobalamin (5'-phosphate) synthase YP_003060531.1 PFAM: phosphoglycerate mutase; KEGG: mfa:Mfla_0100 phosphoglycerate mutase YP_003060532.1 KEGG: sil:SPO0262 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_003060533.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2735 TonB-dependent receptor YP_003060534.1 PFAM: periplasmic binding protein; KEGG: cak:Caul_3090 iron compound ABC transporter periplasmic substrate-binding protein YP_003060535.1 PFAM: transporter permease; ABC-3 protein; KEGG: bmt:BSUIS_A1396 transporter permease YP_003060536.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: oan:Oant_1829 ABC transporter YP_003060537.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: bja:bll3259 cobyric acid synthase YP_003060538.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: rsh:Rsph17029_2087 cobalamin biosynthesis protein CobD YP_003060539.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: rpc:RPC_3743 aminotransferase, class I and II YP_003060540.1 PFAM: cobalbumin biosynthesis protein; KEGG: rpb:RPB_0740 cobalbumin biosynthesis enzyme YP_003060541.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rpe:RPE_1202 response regulator receiver modulated serine phosphatase YP_003060542.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: bbt:BBta_2150 anti-sigma-factor antagonist YP_003060543.1 PFAM: chemotaxis sensory transducer; KEGG: bbt:BBta_2149 hypothetical protein YP_003060544.1 KEGG: plu:plu1856 chemotaxis-specific methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver YP_003060545.1 PFAM: CheD family protein; KEGG: rpe:RPE_1197 CheD, stimulates methylation of MCP proteins YP_003060546.1 KEGG: rpe:RPE_1196 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003060547.1 KEGG: sde:Sde_3105 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; PAS domain containing protein YP_003060548.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ccs:CCNA_00443 chemotaxis protein CheW YP_003060549.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: rpe:RPE_1193 CheA signal transduction histidine kinases YP_003060550.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bra:BRADO1821 chemotaxis protein CheY YP_003060551.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS YP_003060552.1 PFAM: PepSY-associated TM helix domain protein; KEGG: nwi:Nwi_2319 propeptide, PepSY amd peptidase M4 YP_003060553.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: nwi:Nwi_2318 TonB-dependent siderophore receptor YP_003060554.1 KEGG: ccs:CCNA_03614 hypothetical protein YP_003060556.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cja:CJA_2539 exogenous ferric siderophore TonB-dependent receptor YP_003060557.1 PFAM: ApbE family lipoprotein; KEGG: pzu:PHZ_c0808 thiamine biosynthesis protein YP_003060558.1 KEGG: mms:mma_3615 ABC transporter periplasmic protein YP_003060559.1 KEGG: xcb:XC_1337 hypothetical protein YP_003060560.1 PFAM: PepSY-associated TM helix domain protein; KEGG: rpe:RPE_4573 PepSY-associated TM helix domain protein YP_003060561.1 PFAM: protein of unknown function DUF541; KEGG: ccs:CCNA_02378 hypothetical protein YP_003060563.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_003060564.1 PFAM: peptidase M28; KEGG: cak:Caul_4272 peptidase M28 YP_003060565.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_2448 glyoxalase/bleomycin resistance protein/dioxygenase YP_003060566.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swd:Swoo_1045 glyoxalase/bleomycin resistance protein/dioxygenase YP_003060567.1 KEGG: ppr:PBPRA0239 hypothetical protein YP_003060568.1 PFAM: protein of unknown function UPF0047; KEGG: atc:AGR_C_3925 hypothetical protein YP_003060570.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sil:SPO3635 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_003060573.1 KEGG: noc:Noc_1412 hypothetical protein YP_003060574.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: pzu:PHZ_c0604 transcriptional regulator, AsnC family YP_003060575.1 KEGG: sde:Sde_3149 phosphoryl transfer system, HPr; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_003060576.1 PFAM: protein of unknown function DUF161; KEGG: bcs:BCAN_A0646 hypothetical protein YP_003060578.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: pzu:PHZ_c0792 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_003060579.1 KEGG: pzu:PHZ_c3391 conserved predicted integral membrane protein YP_003060581.1 KEGG: pzu:PHZ_c0791 flagellin YP_003060582.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: pzu:PHZ_c0790 flagellar hook-associated protein YP_003060584.1 KEGG: hypothetical protein LOC100021983 YP_003060585.1 PFAM: flagellar hook capping protein; KEGG: pla:Plav_2186 flagellar hook capping protein YP_003060586.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; KEGG: pzu:PHZ_c0787 flagellar hook protein FlgE YP_003060587.1 PFAM: protein of unknown function DUF1153; KEGG: azc:AZC_1033 hypothetical protein YP_003060588.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: flagellar M-ring domain protein; secretory protein YscJ/FliF family protein; KEGG: pzu:PHZ_c0862 flagellar M-ring protein FliF YP_003060589.1 One of three proteins involved in switching the direction of the flagellar rotation YP_003060590.1 KEGG: mrd:Mrad2831_5057 flagellar assembly protein FliH YP_003060591.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: ccs:CCNA_00953 flagellar motor switch protein FliN YP_003060592.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: pzu:PHZ_c0858 transcriptional regulator FlbD YP_003060593.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: pla:Plav_2179 flagellar biosynthesis protein FlhA YP_003060594.1 PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: tbd:Tbd_1178 flagellar biosynthetic protein FlhF YP_003060595.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: maq:Maqu_1976 cobyrinic acid a,c-diamide synthase YP_003060596.1 KEGG: bxe:Bxe_B1411 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003060597.1 KEGG: smt:Smal_1876 flagellar export protein FliJ YP_003060598.1 involved in type III protein export during flagellum assembly YP_003060599.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pla:Plav_2174 two component transcriptional regulator YP_003060601.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mll3827 transcriptional regulator YP_003060602.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: eba:ebA3511 hypothetical protein YP_003060605.1 KEGG: asu:Asuc_2076 hypothetical protein YP_003060606.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_003060607.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ara:Arad_4319 tyrosine recombinase XerC YP_003060608.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: mch:Mchl_2794 DEAD/DEAH box helicase YP_003060609.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pat:Patl_1106 phosphodiesterase I YP_003060610.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_1435 glyoxalase/bleomycin resistance protein/dioxygenase YP_003060611.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: vha:VIBHAR_02208 hypothetical protein YP_003060612.1 KEGG: pfo:Pfl01_0888 type III effector HopPmaJ(Pto) YP_003060613.1 PFAM: phosphoglycerate mutase; KEGG: slo:Shew_0856 phosphoglycerate mutase YP_003060615.1 PFAM: regulatory protein MarR; KEGG: ccs:CCNA_02289 transcriptional regulator, MarR/EmrR family YP_003060616.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: ccs:CCNA_00346 dihydrolipoamide dehydrogenase YP_003060618.1 PFAM: LytTr DNA-binding region; KEGG: xac:XAC1874 regulatory protein YP_003060619.1 KEGG: bja:blr4337 hypothetical protein YP_003060620.1 PFAM: protein of unknown function DUF606; KEGG: sdn:Sden_0761 hypothetical protein YP_003060621.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: sit:TM1040_3510 dihydrolipoamide succinyltransferase YP_003060622.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_003060623.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_003060624.1 KEGG: ara:Arad_4336 succinyl-CoA synthetase subunit beta protein; TIGRFAM: succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_003060625.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dar:Daro_0549 TRAP transporter solute receptor TAXI family protein YP_003060628.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: sde:Sde_0090 peptidase C60, sortase A and B YP_003060629.1 PFAM: protein of unknown function DUF1428; KEGG: shm:Shewmr7_2817 protein of unknown function DUF1428 YP_003060630.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase; KEGG: ccs:CCNA_03770 malate dehydrogenase YP_003060631.1 KEGG: cak:Caul_2903 hypothetical protein YP_003060632.1 KEGG: bmj:BMULJ_03470 highly repetitive protein YP_003060633.1 PFAM: AFG1-family ATPase; KEGG: pla:Plav_1448 AFG1 family ATPase YP_003060634.1 KEGG: reh:H16_A3237 response regulator containing sigma54 activator and fis-type DNA-binding domains YP_003060635.1 PFAM: inner membrane protein CreD; KEGG: atc:AGR_C_2138 tolerance to colicin E2 YP_003060636.1 KEGG: pla:Plav_1333 hypothetical protein YP_003060637.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: vei:Veis_3046 activator of HSP90 ATPase 1 family protein YP_003060638.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mlo:mll5360 transcriptional regulator YP_003060639.1 PFAM: protein of unknown function DUF1260; KEGG: aci:ACIAD0716 hypothetical protein YP_003060642.1 PFAM: helix-turn-helix HxlR type; regulatory protein MarR; KEGG: bxe:Bxe_A1731 transcriptional regulator YP_003060643.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mno:Mnod_2222 short-chain dehydrogenase/reductase SDR YP_003060645.1 PFAM: BAAT/acyl-CoA thioester hydrolase; KEGG: ccs:CCNA_00926 acyl CoA thioesterase YP_003060646.1 KEGG: hch:HCH_01548 hypothetical protein YP_003060647.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003060652.1 PFAM: SlyX family protein; KEGG: rpe:RPE_1367 SlyX family protein YP_003060654.1 PFAM: cupin; KEGG: hypothetical LOC577190 YP_003060655.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aeh:Mlg_0532 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003060657.1 PFAM: glutaredoxin; KEGG: vsp:VS_II0308 glutaredoxin YP_003060658.1 TIGRFAM: arsenic resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: ppw:PputW619_5149 arsenic resistance protein ArsH YP_003060659.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: cti:RALTA_A0629 L-lysine exporter YP_003060660.1 TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: oan:Oant_2974 LysR family transcriptional regulator YP_003060662.1 PFAM: endoribonuclease L-PSP; KEGG: ank:AnaeK_2969 endoribonuclease L-PSP YP_003060663.1 PFAM: regulatory protein TetR; KEGG: ade:Adeh_2880 TetR family transcriptional regulator YP_003060665.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pin:Ping_2106 short-chain dehydrogenase/reductase SDR YP_003060666.1 PFAM: Luciferase-like monooxygenase; KEGG: mes:Meso_3503 luciferase-like YP_003060667.1 KEGG: mlo:msr0042 hypothetical protein YP_003060670.1 KEGG: mes:Meso_2030 hypothetical protein YP_003060671.1 KEGG: cak:Caul_1056 hypothetical protein YP_003060672.1 KEGG: cak:Caul_4583 thiol-disulfide isomerase YP_003060673.1 PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha; KEGG: sdn:Sden_2041 2OG-Fe(II) oxygenase YP_003060674.1 PFAM: beta-lactamase; KEGG: sde:Sde_1764 Na-translocating NADH-quinone reductase subunit A YP_003060675.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: mxa:MXAN_6982 hypothetical protein YP_003060676.1 PFAM: major facilitator superfamily MFS_1; KEGG: pzu:PHZ_c2279 major facilitator family transporter YP_003060677.1 PFAM: lipocalin; Lipocalin-related protein and Bos/Can/Equ allergen; KEGG: gsu:GSU2326 outer membrane lipoprotein YP_003060678.1 PFAM: protein of unknown function DUF204; KEGG: rpe:RPE_0223 protein of unknown function DUF204 YP_003060679.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_003060680.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: oan:Oant_0087 antibiotic biosynthesis monooxygenase YP_003060681.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: mlo:mll2956 hypothetical protein YP_003060682.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_003060683.1 KEGG: rpe:RPE_1678 glyoxalase/bleomycin resistance protein/dioxygenase YP_003060684.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: sde:Sde_2518 pseudouridine synthase, RluD YP_003060685.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: cak:Caul_2472 ArsR family transcriptional regulator YP_003060686.1 PFAM: response regulator receiver; KEGG: bid:Bind_1961 response regulator receiver YP_003060687.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; Penicillin-binding domain protein; penicillin-binding protein transpeptidase; KEGG: ccs:CCNA_03685 multimodular transpeptidase-transglycosylase YP_003060688.1 PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin 2; KEGG: ccs:CCNA_03686 alpha2 macroglobulin domain-containing extracellular protein YP_003060689.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dat:HRM2_23420 rRNA methylase-family protein YP_003060690.1 PFAM: peptidase T2 asparaginase 2; KEGG: ccs:CCNA_00096 L-asparaginase YP_003060691.1 KEGG: azo:azo2917 Tfp pilus assembly protein YP_003060693.1 PFAM: protein of unknown function DUF1232; KEGG: ara:Arad_4380 hypothetical protein YP_003060694.1 PFAM: flagellin domain protein; KEGG: cak:Caul_2884 flagellin domain-containing protein YP_003060695.1 KEGG: swd:Swoo_1610 flagellar protein FlaG protein YP_003060696.1 PFAM: flagellin domain protein; KEGG: pzu:PHZ_c1384 flagellin FljM YP_003060697.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rsq:Rsph17025_3841 hypothetical protein YP_003060698.1 KEGG: rpc:RPC_3302 glycosyl transferase, group 1 YP_003060699.1 PFAM: glycosyl transferase family 2; radical SAM domain protein; KEGG: rec:RHECIAT_CH0001590 beta-D-1,6 glucosyltransferase protein YP_003060700.1 KEGG: gur:Gura_2354 hypothetical protein YP_003060701.1 PFAM: oxidoreductase domain protein; KEGG: ret:RHE_CH01518 oxidoreductase protein YP_003060702.1 PFAM: AMP-dependent synthetase and ligase; KEGG: vsa:VSAL_I2699 AMP-binding enzyme, long chain fatty acid Co-A ligase, acetyl-CoA synthetase YP_003060703.1 KEGG: rle:RL0799 hexapeptide repeat-containing transferase YP_003060704.1 PFAM: flagellin domain protein; KEGG: pzu:PHZ_c1384 flagellin FljM YP_003060705.1 PFAM: flagellin domain protein; KEGG: pzu:PHZ_c1384 flagellin FljM YP_003060706.1 PFAM: flagellin domain protein; KEGG: pzu:PHZ_c1384 flagellin FljM YP_003060707.1 PFAM: flagellin domain protein; KEGG: pzu:PHZ_c1384 flagellin FljM YP_003060708.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: met:M446_2179 HAD family hydrolase YP_003060709.1 PFAM: flagellar FlaF family protein; KEGG: cak:Caul_2888 flagellar biosynthesis regulatory protein FlaF YP_003060710.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_003060711.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: cak:Caul_2890 TPR repeat-containing protein YP_003060712.1 PFAM: ferredoxin; KEGG: pzu:PHZ_c0215 ferredoxin 2Fe-2S YP_003060713.1 PFAM: protein of unknown function UPF0079; KEGG: ccs:CCNA_03648 ATP/GTP hydrolase YP_003060714.1 PFAM: aminoglycoside phosphotransferase; KEGG: ccs:CCNA_03649 Ser/Thr kinase-related phosphotransferase YP_003060715.1 PFAM: nucleotidyl transferase; KEGG: pla:Plav_0136 nucleotidyl transferase YP_003060716.1 KEGG: pzu:PHZ_c0201 hypothetical protein YP_003060717.1 TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: ccs:CCNA_03652 ATP-dependent nuclease subunit A YP_003060718.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: pla:Plav_0139 thioredoxin YP_003060719.1 KEGG: ccs:CCNA_03655 folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003060720.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; KEGG: ccs:CCNA_03656 acetyl-coenzyme A carboxylase carboxyl transferase subunit beta YP_003060721.1 KEGG: pfo:Pfl01_0104 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, subunit alpha; PFAM: tryptophan synthase alpha chain YP_003060722.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: saz:Sama_0539 periplasmic divalent cation tolerance protein CutA YP_003060723.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003060724.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: oan:Oant_0809 phosphoribosylanthranilate isomerase YP_003060725.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: psa:PST_0946 large conductance mechanosensitive channel protein YP_003060726.1 KEGG: pla:Plav_0147 integration host factor, beta subunit; TIGRFAM: integration host factor subunit beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003060727.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_003060728.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: msl:Msil_0614 cytidylate kinase YP_003060729.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_003060730.1 KEGG: ccs:CCNA_03705 hypothetical protein YP_003060731.1 PFAM: nitrogen regulatory protein P-II; KEGG: cak:Caul_0380 nitrogen regulatory protein P-II YP_003060732.1 KEGG: cak:Caul_0379 methyltransferase type 11 YP_003060733.1 KEGG: pla:Plav_1578 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_003060734.1 KEGG: pzu:PHZ_c0433 hypothetical protein YP_003060735.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ccs:CCNA_00545 acetoacetyl-CoA reductase YP_003060736.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; KEGG: pla:Plav_1572 polyhydroxyalkonate synthesis repressor, PhaR YP_003060738.1 KEGG: pzu:PHZ_c0428 hypothetical protein YP_003060739.1 KEGG: ccs:CCNA_00503 hypothetical protein YP_003060740.1 PFAM: glycosyl transferase family 2; KEGG: ccs:CCNA_00502 glycosyl transferase YP_003060741.1 PFAM: glycosyl transferase family 39; KEGG: ccs:CCNA_00501 glucosyltransferase YP_003060742.1 PFAM: glycosyl transferase family 2; KEGG: ccs:CCNA_02158 rhamnosyl transferase YP_003060743.1 PFAM: O-antigen polymerase; KEGG: pzu:PHZ_c1987 hypothetical protein YP_003060744.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_003060745.1 PFAM: protein of unknown function DUF37; KEGG: mno:Mnod_7170 protein of unknown function DUF37 YP_003060746.1 KEGG: bra:BRADO4721 hypothetical protein YP_003060748.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: glo:Glov_3113 multi-sensor hybrid histidine kinase YP_003060749.1 PFAM: pseudouridine synthase; KEGG: pla:Plav_2192 pseudouridine synthase YP_003060750.1 PFAM: polysaccharide deacetylase; KEGG: cja:CJA_1289 polysaccharide deacetylase YP_003060751.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: cak:Caul_4527 NifU domain-containing protein YP_003060752.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: pzu:PHZ_c1367 probable exopolysaccharide synthesis protein YP_003060753.1 KEGG: protein C20orf22 YP_003060754.1 KEGG: sdn:Sden_3599 hypothetical protein YP_003060755.1 KEGG: ccs:CCNA_00492 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR YP_003060756.1 KEGG: pzu:PHZ_c0417 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I YP_003060757.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pat:Patl_3871 XRE family transcriptional regulator YP_003060758.1 KEGG: pat:Patl_3870 hypothetical protein YP_003060759.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: bid:Bind_1579 phosphoribosyl-AMP cyclohydrolase YP_003060760.1 PFAM: protein of unknown function DUF847; KEGG: bcs:BCAN_A1001 hypothetical protein YP_003060761.1 TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: cak:Caul_0345 RluA family pseudouridine synthase YP_003060762.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: bph:Bphy_1275 methyl-accepting chemotaxis sensory transducer YP_003060763.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_003060764.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ftw:FTW_1341 hypothetical protein YP_003060765.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ara:Arad_4837 dTDP-glucose 4,6-dehydratase YP_003060766.1 KEGG: cak:Caul_0658 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003060767.1 KEGG: cak:Caul_0657 hypothetical protein YP_003060768.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_003060769.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pzu:PHZ_c3088 hypothetical protein YP_003060770.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pla:Plav_2119 Tol-Pal system TolQ YP_003060771.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: pla:Plav_2120 biopolymer transport TolR YP_003060772.1 KEGG: hha:Hhal_2216 TonB domain-containing protein YP_003060773.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; hypothetical protein; KEGG: pzu:PHZ_c3092 periplasmic component of the Tol biopolymer transporter YP_003060774.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cak:Caul_4426 peptidoglycan-associated lipoprotein YP_003060775.1 TIGRFAM: tol-pal system protein YbgF; KEGG: ccs:CCNA_03336 Tol system periplasmic component YbgF YP_003060776.1 KEGG: tmz:Tmz1t_1048 hypothetical protein YP_003060777.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: sit:TM1040_2362 tRNA(Ile)-lysidine synthetase-like YP_003060778.1 KEGG: avi:Avi_3627 metalloprotease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003060779.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: sit:TM1040_0565 oxidoreductase-like YP_003060780.1 KEGG: ccs:CCNA_03332 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003060781.1 KEGG: rfr:Rfer_1231 hypothetical protein YP_003060782.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: pzu:PHZ_c3281 phosphomethylpyrimidine kinase YP_003060783.1 PFAM: protein of unknown function DUF606; KEGG: psa:PST_0983 hypothetical protein YP_003060784.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cak:Caul_4473 PhzF family phenazine biosynthesis protein YP_003060785.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: bbt:BBta_4739 methyl-accepting chemotaxis sensory transducer YP_003060786.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_003060787.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: pla:Plav_1339 MazG nucleotide pyrophosphohydrolase YP_003060788.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003060789.1 KEGG: sde:Sde_3260 hypothetical protein YP_003060790.1 PFAM: protein of unknown function UPF0126; KEGG: rpb:RPB_1303 hypothetical protein YP_003060791.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; KEGG: ccs:CCNA_03345 Holliday junction DNA helicase RuvA YP_003060792.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_003060794.1 PFAM: protein of unknown function UPF0153; KEGG: pfl:PFL_1499 hypothetical protein YP_003060795.1 KEGG: bja:bll2563 hypothetical protein YP_003060797.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: cak:Caul_1207 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_003060798.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: bja:bll4607 D-fructose-6-phosphate amidotransferase YP_003060799.1 KEGG: ccs:CCNA_03752 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase YP_003060800.1 KEGG: bvi:Bcep1808_6840 hypothetical protein YP_003060801.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: pla:Plav_1959 membrane bound O-acyl transferase MBOAT family protein YP_003060803.1 KEGG: ccs:CCNA_03746 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein YP_003060804.1 PFAM: glutathione S-transferase domain; KEGG: pla:Plav_2848 glutathione S-transferase domain-containing protein YP_003060805.1 PFAM: glutathione S-transferase domain; KEGG: ccs:CCNA_03754 glutathione S-transferase family protein YP_003060806.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pzu:PHZ_c3338 cation efflux family protein YP_003060807.1 KEGG: pzu:PHZ_c0045 hypothetical protein YP_003060808.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: mes:Meso_0858 protein of unknown function DUF853, NPT hydrolase YP_003060809.1 PFAM: protein of unknown function UPF0118; KEGG: cak:Caul_4788 hypothetical protein YP_003060810.1 PFAM: NAD-glutamate dehydrogenase; KEGG: cak:Caul_4787 NAD-glutamate dehydrogenase YP_003060811.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_3130 GCN5-related N-acetyltransferase YP_003060812.1 KEGG: pna:Pnap_2721 low molecular weight phosphotyrosine protein phosphatase YP_003060813.1 PFAM: ion transporter; ion transporter; KEGG: pha:PSHAa2614 potassium channel protein YP_003060814.1 KEGG: mfa:Mfla_2358 signal peptide protein YP_003060815.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_003060816.1 PFAM: Domain of unknown function DUF1828 YP_003060819.1 KEGG: scl:sce3487 hypothetical protein YP_003060820.1 KEGG: sat:SYN_02063 outer membrane protein YP_003060822.1 PFAM: dienelactone hydrolase; KEGG: cja:CJA_1059 hydrolase YP_003060823.1 KEGG: gbm:Gbem_2759 hypothetical protein YP_003060825.1 KEGG: rsq:Rsph17025_1226 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A YP_003060826.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: cak:Caul_1442 LacI family transcription regulator YP_003060827.1 PFAM: tryptophan halogenase; KEGG: cja:CJA_2881 tryptophan halogenase YP_003060828.1 PFAM: tryptophan halogenase; FAD dependent oxidoreductase; KEGG: cak:Caul_1840 tryptophan halogenase YP_003060829.1 PFAM: tryptophan halogenase; KEGG: sde:Sde_1094 allophanate hydrolase subunit 2 YP_003060830.1 PFAM: tryptophan halogenase; KEGG: cak:Caul_1842 tryptophan halogenase YP_003060831.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1843 TonB-dependent receptor YP_003060832.1 PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: kpe:KPK_A0121 cellulose 1,4-beta-cellobiosidase YP_003060833.1 PFAM: glycoside hydrolase; KEGG: sml:Smlt2569 glucan 1,4-beta-glucosidase YP_003060834.1 PFAM: glycoside hydrolase; KEGG: cak:Caul_1832 glycoside hydrolase family 3 protein YP_003060835.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_4091 outer membrane insertion C-terminal signal YP_003060836.1 PFAM: tryptophan halogenase; KEGG: ccs:CCNA_02371 tryptophan halogenase superfamily protein YP_003060837.1 PFAM: tryptophan halogenase; KEGG: lch:Lcho_3228 tryptophan halogenase YP_003060838.1 KEGG: cak:Caul_2066 hypothetical protein YP_003060839.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pat:Patl_2810 alpha amylase, catalytic region YP_003060840.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_02366 cytoplasmic membrane maltose transporter MalY YP_003060841.1 PFAM: esterase; KEGG: sde:Sde_0590 alpha-glucosidase YP_003060842.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cak:Caul_4090 alpha amylase catalytic region YP_003060843.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ccs:CCNA_02368 alpha-glucosidase YP_003060844.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: cak:Caul_4088 LacI family transcription regulator YP_003060845.1 PFAM: ferredoxin; KEGG: oca:OCAR_7389 ferredoxin YP_003060846.1 PFAM: cytochrome P450; KEGG: pla:Plav_3499 cytochrome P450 YP_003060847.1 PFAM: aldehyde dehydrogenase; KEGG: pla:Plav_3253 aldehyde dehydrogenase YP_003060848.1 KEGG: pla:Plav_3500 MarR family transcriptional regulator YP_003060849.1 PFAM: AMP-dependent synthetase and ligase; KEGG: aav:Aave_2946 acyl-CoA synthetase YP_003060850.1 KEGG: pla:Plav_3498 hypothetical protein YP_003060851.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0377 TonB-dependent receptor YP_003060852.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll2413 short chain dehydrogenase YP_003060853.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: plu:plu2614 hypothetical protein YP_003060854.1 PFAM: transcriptional regulator PadR family protein; KEGG: rpe:RPE_0670 PadR family transcriptional regulator YP_003060855.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: maq:Maqu_0601 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003060856.1 KEGG: mno:Mnod_6024 hypothetical protein YP_003060857.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_4276 TonB-dependent receptor YP_003060858.1 PFAM: hypothetical protein; sulfotransferase; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_4275 TPR domain/sulfotransferase domain-containing protein YP_003060859.1 PFAM: beta-lactamase; KEGG: rpi:Rpic_4820 beta-lactamase YP_003060860.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: maq:Maqu_4034 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_003060861.1 KEGG: mpt:Mpe_B0458 ABC type ATPase; TIGRFAM: phosphonate ABC transporter ATPase; PFAM: ABC transporter; SMART: AAA ATPase YP_003060862.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: maq:Maqu_4036 phosphonate ABC transporter inner membrane subunit YP_003060863.1 KEGG: xau:Xaut_2117 hypothetical protein YP_003060864.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like YP_003060865.1 KEGG: cak:Caul_1743 alkaline phosphatase YP_003060866.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_1138 TonB-dependent receptor plug YP_003060867.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bph:Bphy_7446 HAD family hydrolase YP_003060868.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: reh:H16_B1066 transcriptional regulator YP_003060869.1 KEGG: pla:Plav_2531 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003060870.1 KEGG: mes:Meso_3264 hypothetical protein YP_003060871.1 KEGG: oan:Oant_0081 hypothetical protein YP_003060873.1 PFAM: aldehyde dehydrogenase; KEGG: sit:TM1040_3325 aldehyde dehydrogenase YP_003060874.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC0144 TonB-dependent receptor YP_003060875.1 TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: bbt:BBta_6487 5-dehydro-4-deoxyglucarate dehydratase YP_003060876.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bja:blr5870 transcriptional regulatory protein YP_003060878.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl01_0829 D-galactonate transporter YP_003060879.1 KEGG: eta:ETA_30300 probable alcaligin biosynthesis protein YP_003060880.1 KEGG: pfo:Pfl01_3811 copper resistance B precursor YP_003060881.1 PFAM: peptidase S58 DmpA; KEGG: mch:Mchl_4618 peptidase S58 DmpA YP_003060882.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: hch:HCH_06122 acyl-CoA dehydrogenase YP_003060883.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bav:BAV3194 CoA-transferase YP_003060884.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2368 TonB-dependent receptor YP_003060885.1 KEGG: bra:BRADO3396 signal peptide YP_003060886.1 TIGRFAM: amino acid/peptide transporter; PFAM: major facilitator superfamily MFS_1; TGF-beta receptor type I/II extracellular region; KEGG: bba:Bd1840 permease YP_003060888.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pzu:PHZ_c2004 LysR family transcriptional regulator YP_003060889.1 PFAM: beta-lactamase; KEGG: har:HEAR1491 6-aminohexanoate-dimer hydrolase YP_003060890.1 PFAM: negative transcriptional regulator; KEGG: ara:Arad_1565 transcriptional regulator YP_003060891.1 PFAM: aminotransferase class-III; KEGG: pfs:PFLU5846 aminotransferase YP_003060892.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tau:Tola_1107 succinic semialdehyde dehydrogenase YP_003060893.1 PFAM: beta-lactamase; KEGG: bov:BOV_A0916 hypothetical protein YP_003060894.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ccs:CCNA_03688 transcriptional regulator, AsnC family YP_003060895.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; shikimate/quinate 5-dehydrogenase; KEGG: spl:Spea_2235 alanine dehydrogenase YP_003060897.1 PFAM: protein of unknown function DUF323; KEGG: pla:Plav_2806 hypothetical protein YP_003060898.1 PFAM: amidohydrolase; hypothetical protein; amidohydrolase; KEGG: swd:Swoo_0015 amidohydrolase YP_003060899.1 KEGG: pfo:Pfl01_1424 hypothetical protein YP_003060900.1 KEGG: reu:Reut_A0667 PepSY-associated TM helix YP_003060901.1 KEGG: pzu:PHZ_c0034 hypothetical protein YP_003060902.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psa:PST_0996 TonB-dependent siderophore receptor YP_003060903.1 PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha; KEGG: bmj:BMULJ_04725 oxygenase superfamily subunit alpha YP_003060904.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbn:Sbal195_4371 MotA/TolQ/ExbB proton channel YP_003060905.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: sbm:Shew185_4238 biopolymer transporter ExbD/TolR YP_003060906.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: hha:Hhal_0452 biopolymer transporter ExbD/TolR YP_003060907.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sbn:Sbal195_4374 TonB family protein YP_003060908.1 PFAM: isochorismatase hydrolase; KEGG: cak:Caul_1793 isochorismatase hydrolase YP_003060909.1 PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_1791 major facilitator transporter YP_003060910.1 PFAM: Luciferase-like monooxygenase; KEGG: ccs:CCNA_01227 nitrilotriacetate monooxygenase YP_003060911.1 KEGG: cak:Caul_1794 hypothetical protein YP_003060912.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rhi:NGR_b17040 monooxygenase/reductase YP_003060913.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cak:Caul_1879 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003060914.1 PFAM: taurine dioxygenase; KEGG: cak:Caul_1796 taurine dioxygenase YP_003060915.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0563 TonB-dependent receptor YP_003060916.1 PFAM: major facilitator superfamily MFS_1; KEGG: pmr:PMI2163 MFS-family transporter YP_003060917.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcs:BCAN_B0666 hypothetical protein YP_003060918.1 PFAM: nitroreductase; KEGG: atc:AGR_C_4536 enzyme YP_003060919.1 PFAM: taurine dioxygenase; KEGG: scl:sce2334 hypothetical protein YP_003060920.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pla:Plav_0987 short-chain dehydrogenase/reductase SDR YP_003060921.1 PFAM: PfkB domain protein; KEGG: ccs:CCNA_01001 ribokinase YP_003060922.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_2062 major facilitator superfamily MFS_1 YP_003060923.1 KEGG: pla:Plav_0978 glyoxalase/bleomycin resistance protein/dioxygenase YP_003060924.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cak:Caul_1804 AraC family transcriptional regulator YP_003060925.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: cak:Caul_1801 Rieske (2Fe-2S) domain-containing protein YP_003060926.1 PFAM: acetamidase/Formamidase; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pla:Plav_0981 helix-turn-helix domain-containing protein YP_003060927.1 PFAM: acetamidase/Formamidase; KEGG: cak:Caul_1803 acetamidase/formamidase YP_003060928.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: mms:mma_1661 hypothetical protein YP_003060929.1 PFAM: sodium symporter; KEGG: rpi:Rpic_2813 bile acid:sodium symporter YP_003060930.1 PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: pae:PA1907 hypothetical protein YP_003060931.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0705 short-chain dehydrogenase/reductase YP_003060932.1 PFAM: aldehyde dehydrogenase; KEGG: bur:Bcep18194_C6756 aldehyde dehydrogenase (acceptor) YP_003060933.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpa:RPA3463 hypothetical protein YP_003060934.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: rpt:Rpal_5040 IclR family transcriptional regulator YP_003060935.1 PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: rpe:RPE_1861 hypothetical protein YP_003060936.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pat:Patl_3467 permease for cytosine/purines, uracil, thiamine, allantoin YP_003060937.1 PFAM: protein of unknown function DUF917; KEGG: pzu:PHZ_c2412 hypothetical protein YP_003060938.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: scl:sce2620 N-methylhydantoinase A, beta-subunit (ATP-hydrolyzing) YP_003060939.1 PFAM: amidohydrolase; KEGG: eca:ECA3691 hypothetical protein YP_003060940.1 KEGG: pat:Patl_2787 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003060941.1 PFAM: amidohydrolase; amidohydrolase; KEGG: LAL1; LAL1 AtLAF1/3-like protein ; K07047 YP_003060942.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: bur:Bcep18194_B0417 major facilitator transporter YP_003060943.1 PFAM: HpcH/HpaI aldolase; KEGG: ret:RHE_PC00060 citrate lyase subunit beta protein YP_003060944.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: smt:Smal_0917 TonB-dependent siderophore receptor YP_003060945.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: xcv:XCV3536 LuxR family transcriptional regulator YP_003060946.1 KEGG: azc:AZC_3979 delta 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003060947.1 PFAM: negative transcriptional regulator; KEGG: mes:Meso_3155 transcriptional regulator-like YP_003060948.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: bbt:BBta_7471 GntR family transcriptional regulator YP_003060949.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: reu:Reut_B5462 esterase/lipase/thioesterase YP_003060950.1 PFAM: glutathione S-transferase domain; KEGG: pat:Patl_0872 glutathione S-transferase-like YP_003060951.1 PFAM: sulfatase; KEGG: mno:Mnod_8255 sulfatase YP_003060952.1 PFAM: alpha/beta hydrolase fold; KEGG: sat:SYN_02434 hydrolase or acyltransferase YP_003060953.1 PFAM: regulatory protein TetR; KEGG: pla:Plav_1538 TetR family transcriptional regulator YP_003060954.1 PFAM: amidohydrolase 2; KEGG: hypothetical protein YP_003060955.1 PFAM: regulatory protein TetR; KEGG: pla:Plav_1538 TetR family transcriptional regulator YP_003060956.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2319 TonB-dependent receptor YP_003060957.1 KEGG: rpt:Rpal_4396 exported protein of unknown function YP_003060958.1 PFAM: monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pla:Plav_1541 monooxygenase FAD-binding YP_003060959.1 PFAM: fumarylacetoacetate hydrolase; KEGG: bxe:Bxe_C1055 fumarylacetoacetate hydrolase YP_003060960.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pla:Plav_1539 glyoxalase/bleomycin resistance protein/dioxygenase YP_003060961.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_1667 AMP-dependent synthetase and ligase YP_003060962.1 KEGG: ccs:CCNA_01464 hypothetical protein YP_003060963.1 KEGG: cak:Caul_0966 hypothetical protein YP_003060964.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bbt:BBta_2734 protocatechuate 4,5-dioxygenase subunit beta YP_003060965.1 PFAM: extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: bra:BRADO2379 protocatechuate 4,5-dioxygenase subunit alpha YP_003060967.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: mmw:Mmwyl1_1910 hypothetical protein YP_003060968.1 PFAM: conserved hypothetical protein; KEGG: dol:Dole_2301 hypothetical protein YP_003060969.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0377 TonB-dependent receptor YP_003060970.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mmw:Mmwyl1_3922 LysR family transcriptional regulator YP_003060971.1 KEGG: pzu:PHZ_c3364 hypothetical protein YP_003060972.1 PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_0598 alpha-L-arabinofuranosidase YP_003060973.1 KEGG: bxe:Bxe_B2513 4,5-dihydroxyphthalate decarboxylase YP_003060974.1 PFAM: aldehyde dehydrogenase; KEGG: csa:Csal_1140 aldehyde dehydrogenase YP_003060975.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1136 TonB-dependent receptor YP_003060976.1 KEGG: mrd:Mrad2831_1369 hypothetical protein YP_003060977.1 PFAM: amidohydrolase 2; KEGG: bxe:Bxe_B2314 4-oxalomesaconate hydratase YP_003060978.1 PFAM: amidohydrolase 2; KEGG: reu:Reut_B5784 amidohydrolase 2 YP_003060979.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS02171 transport transmembrane protein YP_003060980.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_003060981.1 PFAM: HpcH/HpaI aldolase; KEGG: hypothetical protein YP_003060982.1 thiamine-pyrophosphate requiring enzyme YP_003060983.1 KEGG: bja:blr3843 hypothetical protein YP_003060984.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mmw:Mmwyl1_3922 LysR family transcriptional regulator YP_003060985.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: rle:RL0129 transmembrane transporter YP_003060986.1 KEGG: pag:PLES_07231 3-carboxymuconate cyclase YP_003060987.1 PFAM: hypothetical protein; KEGG: hypothetical protein YP_003060988.1 PFAM: glycoside hydrolase family 9; KEGG: sde:Sde_0649 cellulose 1,4-beta-cellobiosidase YP_003060989.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c2460 TonB-dependent receptor YP_003060990.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pat:Patl_0937 ECF subfamily RNA polymerase sigma-24 factor YP_003060991.1 PFAM: FecR protein; KEGG: amc:MADE_02746 regulatory protein YP_003060992.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: xca:xccb100_0128 TonB-dependent outer membrane receptor YP_003060993.1 KEGG: sde:Sde_3157 esterase/lipase-like YP_003060994.1 PFAM: pectinesterase; KEGG: sde:Sde_0944 ribosomal protein L30 YP_003060995.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: swp:swp_0003 sodium:alanine symporter YP_003060996.1 PFAM: hypothetical protein; KEGG: pzu:PHZ_c2113 hypothetical protein YP_003060997.1 PFAM: amidohydrolase; amidohydrolase; KEGG: pzu:PHZ_c0622 amidohydrolase YP_003060998.1 PFAM: amidohydrolase; KEGG: pzu:PHZ_c1859 imidazolonepropionase YP_003060999.1 PFAM: amidohydrolase; amidohydrolase; KEGG: ccs:CCNA_02050 dihydroorotase YP_003061000.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pzu:PHZ_c2731 TonB-dependent receptor YP_003061001.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: esa:ESA_02847 hypothetical protein YP_003061002.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: vcj:VCD_003281 cysteine synthase B YP_003061003.1 PFAM: endoribonuclease L-PSP; KEGG: pzu:PHZ_c1298 translation initiation inhibitor, YjgF family YP_003061004.1 KEGG: kpn:KPN_00256 succinate-semialdehyde dehydrogenase I; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase YP_003061005.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: geo:Geob_3780 histidine kinase YP_003061006.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ompR-like transcriptional regulator YP_003061007.1 PFAM: protein of unknown function DUF1593; KEGG: hypothetical protein YP_003061008.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psp:PSPPH_4857 TonB-dependent receptor YP_003061009.1 PFAM: major facilitator superfamily MFS_1; KEGG: pmy:Pmen_1078 major facilitator transporter YP_003061010.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: bra:BRADO0684 maleylacetoacetate isomerase, MAAI (glutathione S-transferase zeta 1, GSTZ1-1) YP_003061011.1 PFAM: fumarylacetoacetate hydrolase; KEGG: ara:Arad_7200 fumarylpyruvate hydrolase protein YP_003061012.1 TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2 conserved barrel domain protein; KEGG: lch:Lcho_0799 gentisate 1,2-dioxygenase YP_003061013.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: mno:Mnod_1632 IclR family transcriptional regulator YP_003061014.1 PFAM: glycoside hydrolase; KEGG: rle:RL4489 glycosyl hydrolase YP_003061015.1 PFAM: glycoside hydrolase; KEGG: beta-glucosidase-related glycosidases YP_003061016.1 KEGG: bav:BAV0085 lipopolysaccharide biosynthesis protein YP_003061017.1 TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: csa:Csal_1711 sugar transferase YP_003061018.1 KEGG: mlo:mlr7607 phosphomannose isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: nucleotidyl transferase; N-acylglucosamine 2-epimerase; mannose-6-phosphate isomerase type II YP_003061019.1 PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: dat:HRM2_43250 sensory box histidine kinase/response regulator YP_003061020.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rpc:RPC_4510 response regulator receiver domain-containing protein YP_003061021.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: cbd:CBUD_2137 type I secretion adaptor protein (HlyD family) YP_003061022.1 PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: cbd:CBUD_2136 type I protein secretion ATP-binding protein YP_003061023.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: rpc:RPC_4513 ABC transporter related YP_003061024.1 KEGG: hypothetical protein YP_003061025.1 KEGG: predicted protein YP_003061026.1 KEGG: pla:Plav_2066 hypothetical protein YP_003061027.1 PFAM: PepSY-associated TM helix domain protein; KEGG: ccs:CCNA_03022 transporter YP_003061028.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xac:XAC0905 oxidative stress transcriptional regulator YP_003061029.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: shn:Shewana3_3549 catalase/peroxidase HPI YP_003061030.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: cti:RALTA_A3135 pterin-4-alpha-carbinolamine dehydratase YP_003061031.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_003061032.1 PFAM: fumarylacetoacetate hydrolase; KEGG: cak:Caul_3651 fumarylacetoacetate hydrolase YP_003061033.1 KEGG: pcr:Pcryo_1561 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain YP_003061034.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_4358 glyoxalase family protein YP_003061035.1 KEGG: amc:MADE_02541 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_003061036.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_003061037.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rlt:Rleg2_1404 transcriptional regulator, AsnC family YP_003061038.1 PFAM: peptidase M61 domain protein; KEGG: xac:XAC0172 hypothetical protein YP_003061039.1 PFAM: aminotransferase class I and II; KEGG: hypothetical protein YP_003061040.1 PFAM: amino acid permease-associated region; KEGG: bpt:Bpet3919 amino acid transporter YP_003061041.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c0750 TonB-dependent receptor YP_003061042.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: sbp:Sbal223_3329 peptidase S10 serine carboxypeptidase YP_003061043.1 PFAM: ornithine cyclodeaminase/mu-crystallin; shikimate/quinate 5-dehydrogenase; KEGG: sil:SPO3832 ornithine cyclodeaminase/mu-crystallin family protein YP_003061044.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: she:Shewmr4_0889 peptidase S10, serine carboxypeptidase YP_003061045.1 PFAM: aminotransferase class V; aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cak:Caul_5082 aminotransferase class V YP_003061046.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: cak:Caul_5084 peptidase S10 serine carboxypeptidase YP_003061047.1 PFAM: endoribonuclease L-PSP; amidohydrolase; amidohydrolase; KEGG: cps:CPS_3085 amidohydrolase family protein YP_003061048.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: psp:PSPPH_0239 AsnC family transcriptional regulator YP_003061049.1 KEGG: xac:XAC0172 hypothetical protein YP_003061050.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: cak:Caul_3608 L-lactate dehydrogenase YP_003061051.1 PFAM: protein of unknown function DUF718; KEGG: xcc:XCC4070 hypothetical protein YP_003061052.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: cak:Caul_1544 short-chain dehydrogenase/reductase SDR YP_003061053.1 PFAM: aldo/keto reductase; KEGG: cja:CJA_1135 D-threo-aldose 1-dehydrogenase-like protein YP_003061054.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; KEGG: mlo:mlr7090 transcriptional regulator YP_003061055.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: mlo:mll7089 mandelate racemase YP_003061056.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_02400 transporter major facilitator superfamily YP_003061057.1 KEGG: cak:Caul_2405 hypothetical protein YP_003061058.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sil:SPO1570 2-hydroxyacid dehydrogenase YP_003061059.1 PFAM: fumarylacetoacetate hydrolase; KEGG: cak:Caul_3609 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_003061060.1 PFAM: amidohydrolase 2; KEGG: bbt:BBta_3275 hypothetical protein YP_003061061.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xca:xccb100_3821 TonB-dependent outer membrane receptor precursor YP_003061062.1 PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: smd:Smed_5753 regulatory protein LacI YP_003061063.1 KEGG: smd:Smed_5750 hypothetical protein YP_003061064.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_5749 short-chain dehydrogenase/reductase SDR YP_003061065.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: smd:Smed_5746 enoyl-CoA hydratase/isomerase YP_003061066.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: smd:Smed_5748 formyl-CoA transferase YP_003061067.1 KEGG: smd:Smed_5747 integral membrane protein YP_003061068.1 PFAM: fumarylacetoacetate hydrolase; KEGG: mes:Meso_4494 hypothetical protein YP_003061069.1 PFAM: aldehyde dehydrogenase; KEGG: sil:SPOA0260 aldehyde dehydrogenase family protein YP_003061070.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pla:Plav_1883 TonB-dependent receptor YP_003061071.1 KEGG: pla:Plav_2900 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_003061072.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: cak:Caul_3055 acyl-CoA dehydrogenase domain-containing protein YP_003061073.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: smd:Smed_3574 enoyl-CoA hydratase YP_003061074.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: pzu:PHZ_c0206 methylmalonate-semialdehyde dehydrogenase YP_003061075.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_003061077.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: smt:Smal_3801 TonB-dependent receptor YP_003061078.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: smt:Smal_3801 TonB-dependent receptor YP_003061079.1 PFAM: aminotransferase class V; KEGG: bbt:BBta_3802 aminotransferase YP_003061080.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_3610 RNA polymerase sigma-70 family protein YP_003061081.1 KEGG: pat:Patl_3644 carbohydrate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_003061082.1 PFAM: KDPG and KHG aldolase; KEGG: pat:Patl_0899 KDPG and KHG aldolase YP_003061083.1 PFAM: PfkB domain protein; KEGG: xop:PXO_03455 2-keto-3-deoxygluconate kinase YP_003061084.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_4276 TonB-dependent receptor YP_003061085.1 PFAM: hypothetical protein; sulfotransferase; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_4275 TPR domain/sulfotransferase domain-containing protein YP_003061086.1 KEGG: sun:SUN_0062 hypothetical protein YP_003061087.1 KEGG: met:M446_1543 hypothetical protein YP_003061088.1 TIGRFAM: urea ABC transporter substrate-binding protein; KEGG: msl:Msil_2007 UreA ABC transporter UreA binding protein YP_003061089.1 TIGRFAM: urea ABC transporter permease UrtB; PFAM: inner-membrane translocator; KEGG: msl:Msil_2006 inner-membrane translocator YP_003061090.1 TIGRFAM: urea ABC transporter permease UrtC; PFAM: inner-membrane translocator; KEGG: msl:Msil_2005 UreA ABC transporter permease UrtC YP_003061091.1 TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; KEGG: msl:Msil_2004 UreA ABC transporter ATP-binding protein UrtD YP_003061092.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: msl:Msil_2003 UreA ABC transporter ATP-binding protein UrtE YP_003061093.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bbt:BBta_0652 LuxR family transcriptional regulator YP_003061094.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: msl:Msil_2001 integral membrane sensor hybrid histidine kinase YP_003061095.1 PFAM: arginase/agmatinase/formiminoglutamase; KEGG: bur:Bcep18194_B2787 agmatinase YP_003061097.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: rec:RHECIAT_CH0003543 urease accessory protein YP_003061098.1 KEGG: mlo:mll4936 urease accessory protein UreF YP_003061099.1 PFAM: urease accessory protein UreE; KEGG: mes:Meso_2685 UreE urease accessory-like YP_003061100.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_003061101.1 KEGG: mes:Meso_2683 urease subunit beta; TIGRFAM: urease, subunit beta; PFAM: urease subunit beta YP_003061102.1 KEGG: reh:H16_A1082 UreA amidohydrolase (urease) accessory protein UreJ YP_003061103.1 KEGG: sme:SMc01941 urease subunit gamma; TIGRFAM: urease subunit gamma; PFAM: urease subunit gamma region YP_003061104.1 PFAM: urease accessory protein UreD; KEGG: bmt:BSUIS_A0289 urease accessory protein UreD YP_003061105.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0155 TonB-dependent receptor YP_003061106.1 KEGG: azo:azo2256 cytochrome C-552 YP_003061107.1 PFAM: methylamine dehydrogenase light chain domain protein; KEGG: mpt:Mpe_A2653 amine dehydrogenase YP_003061109.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: mpt:Mpe_A2654 hypothetical protein YP_003061110.1 KEGG: bur:Bcep18194_B0602 hypothetical protein YP_003061111.1 KEGG: reu:Reut_B4080 amine dehydrogenase YP_003061112.1 PFAM: cytochrome C class I; KEGG: sil:SPOA0180 cytochrome c family protein YP_003061113.1 PFAM: GAF domain protein; helix-turn-helix Fis-type; KEGG: bra:BRADO1386 fis family transcriptional regulator YP_003061114.1 PFAM: aldehyde dehydrogenase; KEGG: sit:TM1040_3621 aldehyde dehydrogenase YP_003061116.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_0161 TetR family transcriptional regulator YP_003061117.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3650 TonB-dependent receptor YP_003061118.1 PFAM: regulatory protein TetR; KEGG: tau:Tola_0355 TetR family transcriptional regulator YP_003061119.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cja:CJA_1475 multidrug resistance protein YP_003061120.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: lhk:LHK_02130 transporter hydrophobe/amphiphile efflux-1 (HAE1) family YP_003061121.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: lhk:LHK_02131 RND efflux system, outer membrane lipoprotein, NodT family precursor YP_003061122.1 KEGG: hypothetical protein YP_003061123.1 KEGG: hypothetical protein YP_003061124.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: mno:Mnod_6621 IclR family transcriptional regulator YP_003061125.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bac:BamMC406_1208 short-chain dehydrogenase/reductase SDR YP_003061126.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: avn:Avin_09220 mandelate racemase/muconate lactonizing enzyme YP_003061127.1 PFAM: fumarylacetoacetate hydrolase; KEGG: cak:Caul_3609 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_003061128.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll5243 3-oxoacyl-(acyl carrier protein) reductase YP_003061129.1 PFAM: amidohydrolase 2; KEGG: bbt:BBta_3275 hypothetical protein YP_003061130.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: cak:Caul_3608 L-lactate dehydrogenase YP_003061131.1 transports L-rhamnose and L-lyxose into the cell YP_003061132.1 KEGG: ccs:CCNA_00608 polygalacturonase YP_003061133.1 PFAM: glycoside hydrolase family 28; KEGG: pzu:PHZ_c2461 exo-poly-alpha-D-galacturonosidase YP_003061134.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02910 TonB-dependent receptor YP_003061135.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sde:Sde_0954 GntR family transcriptional regulator YP_003061136.1 PFAM: glucuronate isomerase; KEGG: sde:Sde_0940 glucuronate isomerase YP_003061137.1 PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein; KEGG: cja:CJA_0174 dehydratase YP_003061138.1 PFAM: Autotransporter beta- domain protein; KEGG: ccs:CCNA_00290 autotransporter protein YP_003061139.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_3281 hypothetical protein YP_003061140.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1746 hexuronate transporter (MFS) YP_003061141.1 PFAM: Heparinase II/III; KEGG: avn:Avin_46500 alginate lyase YP_003061142.1 KEGG: pat:Patl_3659 poly(beta-D-mannuronate) lyase YP_003061143.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2991 hypothetical protein YP_003061144.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sml:Smlt2599 GntR family transcriptional regulator YP_003061145.1 KEGG: cps:CPS_0639 hypothetical protein YP_003061146.1 PFAM: ANTAR domain protein; response regulator receiver; SMART: response regulator receiver; KEGG: tcx:Tcr_1151 response regulator receiver/ANTAR domain-containing protein YP_003061147.1 KEGG: aeh:Mlg_1703 nitrate transporter YP_003061148.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: azo:azo3551 uroporphyrin-III C-methyltransferase YP_003061149.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; molydopterin dinucleotide-binding region; KEGG: avi:Avi_5892 nitrate reductase large subunit YP_003061150.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: xau:Xaut_1079 nitrite reductase (NAD(P)H), small subunit YP_003061151.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: avi:Avi_5894 nitrite reductase large subunit YP_003061152.1 KEGG: xau:Xaut_1082 nitrate ABC transporter ATPase subunits C and D; TIGRFAM: nitrate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003061153.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sde:Sde_2265 2-isopropylmalate synthase YP_003061154.1 KEGG: xau:Xaut_1084 ABC-type nitrate/sulfonate/bicarbonate transporter YP_003061155.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: maq:Maqu_3334 TPR repeat-containing protein YP_003061156.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_3978 mandelate racemase/muconate lactonizing enzyme YP_003061157.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ccs:CCNA_01037 transcriptional regulator, GntR family YP_003061158.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ccs:CCNA_01513 C4-dicarboxylate-binding protein YP_003061159.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ccs:CCNA_01514 C4-dicarboxylate transporter, small permease YP_003061160.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: ccs:CCNA_01515 C4-dicarboxylate transporter large subunit YP_003061161.1 PFAM: glycoside hydrolase family 43; KEGG: pzu:PHZ_c2480 xylosidase/arabinosidase YP_003061162.1 PFAM: glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; glycoside hydrolase family 67; KEGG: xac:XAC4227 alpha-glucuronidase YP_003061163.1 PFAM: protein of unknown function DUF303 acetylesterase ; glycoside hydrolase family 2 sugar binding; KEGG: xcv:XCV4334 secreted protein YP_003061164.1 PFAM: glycoside hydrolase; PA14 domain protein; SMART: PA14 domain protein; KEGG: sde:Sde_1487 beta-glucosidase YP_003061165.1 KEGG: cja:CJA_3155 hypothetical protein YP_003061166.1 PFAM: tryptophan halogenase; FAD dependent oxidoreductase; KEGG: cak:Caul_1853 tryptophan halogenase YP_003061167.1 SMART: transcription factor jumonji jmjC domain protein; KEGG: cak:Caul_1852 transcription factor jumonji domain-containing protein YP_003061168.1 PFAM: SapC family protein; KEGG: pzu:PHZ_c2924 hypothetical protein YP_003061169.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01051 TonB-dependent receptor YP_003061170.1 PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_0822 alpha-L-arabinofuranosidase YP_003061171.1 KEGG: pat:Patl_2657 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10 YP_003061172.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: xcv:XCV4363 glycoside-pentoside-hexuronide:cation symporter family protein YP_003061173.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: cak:Caul_1442 LacI family transcription regulator YP_003061174.1 PFAM: glycoside hydrolase family 43; KEGG: xcv:XCV0150 xylosidase precursor YP_003061175.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0288 TonB-dependent receptor YP_003061176.1 KEGG: cak:Caul_3552 hypothetical protein YP_003061177.1 PFAM: cupin; KEGG: pzu:PHZ_c2455 cupin 2, conserved barrel YP_003061178.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: ccs:CCNA_01515 C4-dicarboxylate transporter large subunit YP_003061179.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ccs:CCNA_01514 C4-dicarboxylate transporter, small permease YP_003061180.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ccs:CCNA_01513 C4-dicarboxylate-binding protein YP_003061181.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: cak:Caul_1753 mannitol dehydrogenase domain-containing protein YP_003061183.1 KEGG: ccs:CCNA_02100 hypothetical protein YP_003061184.1 PFAM: carboxylesterase type B; KEGG: cak:Caul_1039 carboxylesterase type B YP_003061185.1 TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pzu:PHZ_c2450 2-deoxy-D-gluconate 3-dehydrogenase YP_003061186.1 PFAM: ribose/galactose isomerase; KEGG: eca:ECA1742 hypothetical protein YP_003061187.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ccs:CCNA_01556 LacI family transcriptional regulator YP_003061188.1 KEGG: eca:ECA4070 pectate lyase YP_003061189.1 KEGG: xac:XAC0161 2-keto-4-pentenoate hydratase YP_003061190.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: pmy:Pmen_3345 glycerol kinase YP_003061191.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_003061192.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bcm:Bcenmc03_6887 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003061193.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: xcv:XCV3427 LacI family transcription regulator YP_003061194.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pin:Ping_0224 xylulokinase YP_003061195.1 KEGG: hypothetical protein LOC100208276; TIGRFAM: xylose isomerase; PFAM: xylose isomerase YP_003061196.1 KEGG: sit:TM1040_2379 translaldolase; TIGRFAM: transaldolase; PFAM: transaldolase YP_003061197.1 TIGRFAM: pectate lyase; KEGG: xcb:XC_0126 pectate lyase E YP_003061198.1 TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: rhi:NGR_c28060 transketolase YP_003061199.1 KEGG: bja:bll1370 hypothetical protein YP_003061200.1 PFAM: nitroreductase; KEGG: amc:MADE_01216 oxidoreductase YP_003061201.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: plu:plu2614 hypothetical protein YP_003061202.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pat:Patl_1371 NADH:flavin oxidoreductase/NADH oxidase YP_003061203.1 KEGG: bra:BRADO6726 hypothetical protein YP_003061204.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: sit:TM1040_3171 K+-dependent Na+/Ca+ exchanger related-protein YP_003061205.1 KEGG: spe:Spro_4857 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_003061206.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sfr:Sfri_2064 short-chain dehydrogenase/reductase SDR YP_003061207.1 PFAM: MaoC domain protein dehydratase; KEGG: pag:PLES_09611 hypothetical protein YP_003061208.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: cak:Caul_2049 acyl-CoA dehydrogenase domain-containing protein YP_003061209.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pla:Plav_1060 acyl-CoA dehydrogenase domain-containing protein YP_003061210.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: sil:SPO0879 acyl-CoA dehydrogenase family protein YP_003061211.1 PFAM: aminoglycoside phosphotransferase; KEGG: psb:Psyr_2457 aminoglycoside phosphotransferase YP_003061212.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: abo:ABO_0959 short chain dehydrogenase YP_003061213.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sil:SPO1957 short chain dehydrogenase/reductase family oxidoreductase YP_003061214.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_C7555 TetR family transcriptional regulator YP_003061215.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES; KEGG: cak:Caul_4830 alcohol dehydrogenase YP_003061216.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: pae:PA3534 oxidoreductase YP_003061217.1 PFAM: glutathione S-transferase domain; KEGG: sil:SPO0953 glutathione S-transferase YghU YP_003061218.1 PFAM: pirin; KEGG: bpd:BURPS668_1092 cupin domain-containing protein YP_003061219.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sit:TM1040_2600 (acyl-carrier protein) phosphodiesterase YP_003061220.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: tcx:Tcr_2002 LysR family transcriptional regulator YP_003061221.1 PFAM: amidohydrolase; amidohydrolase; KEGG: pha:PSHAb0513 secreted hydrolase YP_003061222.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_1852 acyl-CoA dehydrogenase-like protein YP_003061223.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_1462 enoyl-CoA hydratase/isomerase YP_003061224.1 KEGG: cak:Caul_3321 hypothetical protein YP_003061225.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: rpd:RPD_3462 ATPase YP_003061226.1 PFAM: protein of unknown function DUF323; KEGG: sde:Sde_3535 hypothetical protein YP_003061227.1 TIGRFAM: methyltransferase; KEGG: pzu:PHZ_c1906 hypothetical protein YP_003061228.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: prw:PsycPRwf_0469 short chain dehydrogenase YP_003061229.1 PFAM: phosphoglycerate mutase; KEGG: maq:Maqu_2201 phosphoglycerate mutase YP_003061230.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_5896 short chain dehydrogenase YP_003061231.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A2994 acyl-CoA synthetase YP_003061232.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_0636 LysR family transcriptional regulator YP_003061233.1 PFAM: class II aldolase/adducin family protein; KEGG: pzu:PHZ_c1185 class II aldolase/adducin domain protein YP_003061234.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pfo:Pfl01_1124 LysR family transcriptional regulator YP_003061235.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES; KEGG: rpt:Rpal_2166 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_003061236.1 KEGG: vco:VC0395_0835 hypothetical protein YP_003061237.1 KEGG: bra:BRADO5460 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: esterase YP_003061238.1 TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: pat:Patl_3727 sugar transporter YP_003061239.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: atc:AGR_L_3083 hypothetical protein YP_003061240.1 PFAM: regulatory protein TetR; KEGG: cak:Caul_0531 TetR family transcriptional regulator YP_003061241.1 KEGG: msu:MS1300 AcrR protein YP_003061242.1 PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: xau:Xaut_3310 dolichyl-phosphate beta-D-mannosyltransferase YP_003061243.1 PFAM: esterase; KEGG: son:SO_4543 hypothetical protein YP_003061244.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_01373 hydrogenase transcriptional regulatory protein YP_003061245.1 PFAM: response regulator receiver; metal-dependent hydrolase HDOD; SMART: response regulator receiver; KEGG: dvl:Dvul_2652 response regulator receiver modulated metal dependent phosphohydrolase YP_003061246.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_01373 hydrogenase transcriptional regulatory protein YP_003061247.1 PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: abo:ABO_2519 response regulator YP_003061248.1 PFAM: integrase family protein; KEGG: sit:TM1040_3585 phage integrase YP_003061250.1 KEGG: hha:Hhal_1297 hypothetical protein YP_003061252.1 KEGG: dol:Dole_1625 hypothetical protein YP_003061253.1 PFAM: Resolvase domain; KEGG: shl:Shal_1790 resolvase domain-containing protein YP_003061255.1 KEGG: maq:Maqu_2299 hypothetical protein YP_003061256.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: sde:Sde_1907 DNA-J like membrane chaperone protein YP_003061257.1 KEGG: msl:Msil_2099 hypothetical protein YP_003061263.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dar:Daro_2371 ABC transporter YP_003061264.1 PFAM: ABC transporter; KEGG: dar:Daro_2372 hypothetical protein YP_003061265.1 KEGG: shm:Shewmr7_3676 acyl carrier protein YP_003061266.1 PFAM: beta-ketoacyl synthase; KEGG: dar:Daro_4185 3-oxoacyl-(acyl carrier protein) synthase I YP_003061267.1 KEGG: dps:DP1848 hypothetical protein YP_003061268.1 KEGG: rfr:Rfer_3972 hypothetical protein YP_003061269.1 KEGG: azo:azo0291 hypothetical protein YP_003061270.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_003061271.1 KEGG: plu:plu2163 hypothetical protein YP_003061272.1 KEGG: rfr:Rfer_3986 hypothetical protein YP_003061273.1 KEGG: mrd:Mrad2831_4609 glucosyltransferase protein YP_003061274.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hha:Hhal_0607 amino acid carrier protein YP_003061275.1 PFAM: peptidoglycan-binding protein; KEGG: dat:HRM2_42920 hypothetical protein YP_003061276.1 KEGG: pla:Plav_0036 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003061277.1 KEGG: cak:Caul_4635 hypothetical protein YP_003061278.1 PFAM: protein of unknown function YGGT; KEGG: rpb:RPB_0110 hypothetical protein YP_003061279.1 PFAM: protein of unknown function DUF167; KEGG: mlo:msl4154 hypothetical protein YP_003061280.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: pla:Plav_1372 methenyltetrahydrofolate cyclohydrolase YP_003061281.1 PFAM: HNH endonuclease YP_003061282.1 PFAM: patatin; KEGG: azo:azo3762 patatin-like protein YP_003061283.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rpt:Rpal_4946 5-formyltetrahydrofolate cyclo-ligase YP_003061285.1 PFAM: metallophosphoesterase; KEGG: pzu:PHZ_c3185 hypothetical protein YP_003061286.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: rsq:Rsph17025_3538 transposase YP_003061287.1 PFAM: protein of unknown function DUF307; KEGG: sbp:Sbal223_1744 protein of unknown function DUF307 YP_003061288.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: hypothetical protein LOC100220864 YP_003061290.1 KEGG: hypothetical protein YP_003061291.1 KEGG: she:Shewmr4_2483 fis family transcriptional regulator; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003061293.1 TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: amc:MADE_02833 phage shock protein A YP_003061294.1 TIGRFAM: phage shock protein B; KEGG: amc:MADE_02832 phage shock protein B YP_003061295.1 TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: ilo:IL0729 stress-responsive transcriptional regulator YP_003061300.1 TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: protein of unknown function DUF752; FAD dependent oxidoreductase; KEGG: pzu:PHZ_c3125 hypothetical protein YP_003061301.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_003061303.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding protein; KEGG: avn:Avin_08490 lytic murein transglycosylase YP_003061304.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_003061305.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: cak:Caul_0874 HAD family hydrolase YP_003061306.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: pla:Plav_2028 hypothetical protein YP_003061307.1 KEGG: ccs:CCNA_03428 cytosolic protein YP_003061308.1 KEGG: pzu:PHZ_c3116 hypothetical protein YP_003061309.1 KEGG: geo:Geob_1824 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003061310.1 PFAM: response regulator receiver; KEGG: hap:HAPS_0341 transcriptional regulatory protein CpxR/response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003061311.1 PFAM: NAD(P) transhydrogenase subunit beta; KEGG: bbt:BBta_6856 pyridine nucleotide transhydrogenase (proton pump), beta subunit YP_003061312.1 KEGG: cak:Caul_0892 NAD(P) transhydrogenase, alpha2 subunit YP_003061313.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rpa:RPA4182 NAD(P)(+) transhydrogenase (AB-specific) YP_003061314.1 KEGG: cak:Caul_0890 aa3 type cytochrome C oxidase subunit IV YP_003061315.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_2568 MscS mechanosensitive ion channel YP_003061316.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: ccs:CCNA_03422 oligoendopeptidase F YP_003061317.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: pzu:PHZ_c3115 sigma-54-dependent transcriptional regulator (activator) protein YP_003061318.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ccs:CCNA_03408 ABC transporter ATP-binding protein YP_003061319.1 KEGG: ccs:CCNA_03407 sodium export permease YP_003061320.1 PFAM: isochorismatase hydrolase; KEGG: cvi:CV_1320 hypothetical protein YP_003061321.1 TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; KEGG: pla:Plav_2069 RpsU-divergently transcribed protein YP_003061322.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bpy:Bphyt_5267 transcriptional regulator, XRE family YP_003061323.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_B1353 acetyltransferase protein YP_003061324.1 KEGG: ccs:CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_003061325.1 KEGG: vvy:VV3218 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_003061326.1 KEGG: pla:Plav_2079 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003061328.1 KEGG: smt:Smal_1168 barnase inhibitor YP_003061329.1 KEGG: pzu:PHZ_c3292 hypothetical protein YP_003061330.1 KEGG: conserved hypothetical protein YP_003061331.1 KEGG: met:M446_1803 short-chain dehydrogenase/reductase SDR YP_003061332.1 PFAM: protein of unknown function DUF1013; KEGG: cak:Caul_0912 hypothetical protein YP_003061333.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES; KEGG: sit:TM1040_2517 zinc-binding alcohol dehydrogenase YP_003061334.1 PFAM: protein of unknown function DUF1192; KEGG: mes:Meso_3407 protein of unknown function DUF1192 YP_003061335.1 PFAM: protein of unknown function DUF1465; KEGG: pzu:PHZ_c3205 hypothetical protein YP_003061336.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_003061337.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: ccs:CCNA_03383 multidrug/protein/lipid ABC transporter family, ATP-binding and permease protein YP_003061338.1 PFAM: beta-lactamase; KEGG: ccs:CCNA_01778 penicillin-binding protein YP_003061339.1 PFAM: DinB family protein; KEGG: mms:mma_1103 hypothetical protein YP_003061340.1 PFAM: inositol monophosphatase; KEGG: pla:Plav_2101 inositol-phosphate phosphatase YP_003061341.1 KEGG: pat:Patl_2657 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10 YP_003061342.1 KEGG: pzu:PHZ_c3200 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003061343.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis YP_003061344.1 PFAM: phosphoglycerate kinase; KEGG: sit:TM1040_1084 phosphoglycerate kinase YP_003061345.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: hap:HAPS_0507 multiple antibiotic resistance (MarC)-related protein YP_003061346.1 KEGG: rhi:NGR_c28070 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003061347.1 TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: rhi:NGR_c28060 transketolase YP_003061348.1 KEGG: cak:Caul_0768 hypothetical protein YP_003061349.1 PFAM: protein of unknown function DUF710; KEGG: oca:OCAR_7308 hypothetical protein YP_003061350.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: pla:Plav_3274 hypothetical protein YP_003061351.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: btr:Btr_1335 response regulator YP_003061352.1 PFAM: N-formylglutamate amidohydrolase; KEGG: msl:Msil_1235 N-formylglutamate amidohydrolase YP_003061353.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cak:Caul_1221 XRE family transcriptional regulator YP_003061354.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: pzu:PHZ_c2948 inositol monophosphatase family protein YP_003061355.1 PFAM: alpha/beta hydrolase fold; KEGG: pzu:PHZ_c2949 lysophospholipase L2 YP_003061356.1 PFAM: sterol-binding domain protein; KEGG: mlo:mlr2969 hypothetical protein YP_003061357.1 KEGG: similar to filamin binding LIM protein 1 YP_003061358.1 KEGG: cak:Caul_1216 hypothetical protein YP_003061359.1 PFAM: heat shock protein Hsp20; KEGG: pzu:PHZ_c2953 heat shock protein HSP20 YP_003061360.1 PFAM: rhomboid family protein; KEGG: prw:PsycPRwf_0312 rhomboid family protein YP_003061361.1 KEGG: bra:BRADO0919 hypothetical protein YP_003061362.1 PFAM: glycosyl transferase group 1; KEGG: cja:CJA_1366 glycosyl transferase, , gt4F YP_003061363.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rpa:RPA4449 pmethyl-accepting chemotaxis receptor/sensory transducer YP_003061364.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: oan:Oant_3304 GTP-binding protein TypA YP_003061365.1 PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein YP_003061366.1 PFAM: superoxide dismutase Ni-type; KEGG: dal:Dalk_0807 superoxide dismutase Ni-type YP_003061367.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: sit:TM1040_3162 lysine exporter protein LysE/YggA YP_003061369.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: cak:Caul_4770 short-chain dehydrogenase/reductase SDR YP_003061370.1 KEGG: GM13394 gene product from transcript GM13394-RA YP_003061371.1 PFAM: protein of unknown function DUF1674; KEGG: ccs:CCNA_00102 cytosolic protein YP_003061372.1 PFAM: peptidase M48 Ste24p; KEGG: pzu:PHZ_c0349 Zn-dependent protease with chaperone function YP_003061373.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: bra:BRADO0340 ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase)(RsmB) YP_003061374.1 PFAM: hypothetical protein; KEGG: eba:ebA1484 outer membrane lipoprotein YP_003061375.1 KEGG: pzu:PHZ_c3501 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003061376.1 PFAM: Heparinase II/III; KEGG: pla:Plav_1321 heparinase II/III family protein YP_003061377.1 PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: sme:SM_b21232 nucleotide sugar epimerase dehydratase protein YP_003061378.1 KEGG: rpa:RPA0028 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region YP_003061379.1 KEGG: ccv:CCV52592_1750 von Willebrand factor A domain-containing protein YP_003061380.1 KEGG: cbc:CbuK_2007 rhodanese-related sulfurtransferase YP_003061381.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_003061382.1 PFAM: inorganic pyrophosphatase; KEGG: mch:Mchl_2350 inorganic diphosphatase YP_003061383.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: dar:Daro_0303 lysine exporter protein LysE/YggA YP_003061384.1 PFAM: carbonic anhydrase; KEGG: mpo:Mpop_1526 carbonate dehydratase YP_003061385.1 PFAM: regulatory protein TetR; KEGG: azc:AZC_0312 transcription regulator YP_003061386.1 PFAM: protein of unknown function DUF1025; KEGG: rsq:Rsph17025_0381 hypothetical protein YP_003061387.1 PFAM: protein of unknown function DUF1052; KEGG: pzu:PHZ_c0224 hypothetical protein YP_003061388.1 KEGG: sml:Smlt3337 hypothetical protein YP_003061389.1 KEGG: pzu:PHZ_c0490 hemolysin-type calcium-binding region protein YP_003061390.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: pzu:PHZ_c0226 response regulator(CheY-like receiver domain and a fis-type HTH domain) YP_003061391.1 KEGG: pla:Plav_0017 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003061392.1 PFAM: electron transporter SCO1/SenC; KEGG: pla:Plav_0014 classical-complement-pathway C3/C5 convertase YP_003061393.1 KEGG: smd:Smed_0806 hypothetical protein YP_003061394.1 PFAM: protein of unknown function DUF45; KEGG: met:M446_4887 hypothetical protein YP_003061395.1 PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0521 sodium/hydrogen exchanger YP_003061397.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: bmc:BAbS19_I13040 endonuclease/exonuclease/phosphatase family YP_003061398.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: amc:MADE_02816 TPR domain protein YP_003061399.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02910 TonB-dependent receptor YP_003061400.1 negatively supercoils closed circular double-stranded DNA YP_003061401.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: pzu:PHZ_c3385 recombinational DNA repair ATPase YP_003061402.1 binds the polymerase to DNA and acts as a sliding clamp YP_003061403.1 KEGG: pla:Plav_0003 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: replication initiation factor DnaA; ATPase AAA YP_003061404.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: rhi:NGR_c37160 30S ribosomal protein S20 YP_003061405.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_3661 enoyl-CoA hydratase/isomerase YP_003061406.1 KEGG: pla:Plav_3660 hypothetical protein YP_003061407.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_003061408.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: pzu:PHZ_c3426 ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_003061409.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: ccs:CCNA_03824 2-polyprenylphenol 6-hydroxylase accessory protein UbiB YP_003061410.1 KEGG: pzu:PHZ_c3423 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003061412.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: avi:Avi_0368 deoxyuridine 5primetriphosphate nucleotidohydrolase YP_003061413.1 KEGG: bvi:Bcep1808_6934 hypothetical protein YP_003061414.1 SMART: ATPase AAA; KEGG: azc:AZC_0977 TPR domain-containing protein YP_003061415.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pzu:PHZ_c0032 molybdopterin biosynthesis protein YP_003061416.1 PFAM: alpha/beta hydrolase fold; KEGG: ccs:CCNA_03841 alpha/beta hydrolase fold protein YP_003061417.1 KEGG: cvi:CV_1082 hypothetical protein YP_003061418.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ccs:CCNA_03838 gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase YP_003061419.1 PFAM: protein of unknown function DUF1058; KEGG: oan:Oant_0735 protein of unknown function DUF1058 YP_003061420.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_003061421.1 PFAM: beta-ketoacyl synthase; KEGG: ilo:IL1021 3-oxoacyl-(acyl-carrier-protein) synthase YP_003061422.1 KEGG: pla:Plav_3623 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003061423.1 KEGG: pzu:PHZ_c3447 predicted S-adenosylmethionine-dependent methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_003061424.1 KEGG: rpc:RPC_3108 response regulator receiver domain-containing protein YP_003061425.1 PFAM: protein of unknown function DUF150; KEGG: met:M446_2614 hypothetical protein YP_003061426.1 KEGG: pzu:PHZ_c3441 N utilization substance protein A; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003061427.1 PFAM: protein of unknown function DUF448; KEGG: cak:Caul_0032 hypothetical protein YP_003061428.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_003061430.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: pzu:PHZ_c3435 ribosome-binding factor A YP_003061431.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_003061432.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: rsh:Rsph17029_2773 30S ribosomal protein S15 YP_003061433.1 KEGG: ccs:CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase; PFAM: 3' exoribonuclease; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003061436.1 PFAM: excinuclease ABC C subunit domain protein; SMART: excinuclease ABC C subunit domain protein; KEGG: pla:Plav_1362 excinuclease ABC subunit C YP_003061437.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_0800 hypothetical protein YP_003061438.1 KEGG: cvi:CV_1085 uridine kinase; PFAM: phosphoribulokinase/uridine kinase; SMART: ATPase AAA YP_003061439.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: mlo:mlr4814 streptogramin A acetyl transferase YP_003061440.1 PFAM: beta-lactamase; KEGG: mxa:MXAN_0432 metallo-beta-lactamase family protein YP_003061441.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_5064 short-chain dehydrogenase/reductase SDR YP_003061442.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; KEGG: csa:Csal_0925 gluconate transporter YP_003061443.1 PFAM: glycoside hydrolase; KEGG: xac:XAC3869 beta-glucosidase YP_003061444.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: xcc:XCC4113 gluconolactonase precursor YP_003061445.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: pap:PSPA7_2622 sugar transporter glycoside-pentoside-hexuronide YP_003061446.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: cja:CJA_1495 LacI family transcriptional regulator YP_003061447.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pzu:PHZ_c3449 transcriptional regulator, Cro/CI family YP_003061448.1 TIGRFAM: apolipoprotein N-acyltransferase; KEGG: bbt:BBta_0050 apolipoprotein N-acyltransferase YP_003061449.1 PFAM: hypothetical protein; transporter-associated region; SMART: hypothetical protein; KEGG: pla:Plav_3620 CBS domain-containing protein YP_003061450.1 PFAM: protein of unknown function UPF0054; KEGG: pzu:PHZ_c3452 hypothetical protein YP_003061451.1 PFAM: PhoH family protein; KEGG: cak:Caul_0022 PhoH family protein YP_003061452.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_003061453.1 PFAM: ferric-uptake regulator; KEGG: pzu:PHZ_c3455 ferric-uptake regulator YP_003061454.1 PFAM: GCN5-related N-acetyltransferase; KEGG: avi:Avi_0433 acetyltransferase YP_003061455.1 PFAM: peptidase M22 glycoprotease; KEGG: ret:RHE_CH00380 O-sialoglycoprotein endopeptidase protein YP_003061456.1 PFAM: Scaffold protein Nfu/NifU ; nitrogen-fixing NifU domain protein; KEGG: pzu:PHZ_c3458 thioredoxin-like protein YP_003061457.1 KEGG: sme:SMc01120 hypothetical protein YP_003061458.1 KEGG: pla:Plav_3609 hypothetical protein YP_003061459.1 PFAM: protein of unknown function DUF461; KEGG: xau:Xaut_0418 hypothetical protein YP_003061460.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003061461.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; polysaccharide biosynthesis protein; KEGG: ccs:CCNA_00063 virulence factor MviN YP_003061462.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_003061463.1 KEGG: pzu:PHZ_c3464 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003061464.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_003061465.1 PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_6531 major facilitator transporter YP_003061466.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: cak:Caul_0191 histidine kinase YP_003061467.1 KEGG: cak:Caul_0179 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003061469.1 KEGG: ccs:CCNA_00140 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase domain protein YP_003061470.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: pla:Plav_3587 transport-associated YP_003061471.1 PFAM: protein of unknown function UPF0102; KEGG: mlo:mlr4633 hypothetical protein YP_003061472.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pla:Plav_3585 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003061473.1 KEGG: pla:Plav_3584 extracellular ligand-binding receptor YP_003061474.1 KEGG: pzu:PHZ_c3475 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003061475.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: azc:AZC_4290 deoxyribonucleotide triphosphate pyrophosphatase YP_003061476.1 KEGG: pzu:PHZ_c3473 hypothetical protein YP_003061477.1 SMART: helix-turn-helix domain protein; KEGG: pzu:PHZ_c3472 transcriptional regulator, Cro/CI family YP_003061478.1 KEGG: ccs:CCNA_00151 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_003061479.1 PFAM: GrpE protein; KEGG: bmc:BAbS19_I01610 GrpE protein YP_003061480.1 PFAM: helix-turn-helix HxlR type; KEGG: pag:PLES_01171 transcriptional regulator YP_003061481.1 PFAM: PfkB domain protein; KEGG: pzu:PHZ_c0039 carbohydrate kinase, PfkB family YP_003061482.1 KEGG: pat:Patl_0408 hypothetical protein YP_003061483.1 KEGG: sme:SMc02843 endonuclease III protein; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003061484.1 KEGG: cak:Caul_5049 hypothetical protein YP_003061486.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1434 lactoylglutathione lyase YP_003061487.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cps:CPS_4968 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_003061488.1 KEGG: bbt:BBta_0197 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003061489.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_003061490.1 TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70; KEGG: smd:Smed_3389 molecular chaperone DnaK YP_003061491.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: ret:RHE_CH00039 alkylated DNA repair protein YP_003061493.1 KEGG: pzu:PHZ_c0035 heat shock protein HslU; TIGRFAM: heat shock protein HslVU, ATPase HslU; PFAM: ATPase AAA-2 domain protein; SMART: ATPase AAA YP_003061494.1 KEGG: rsh:Rsph17029_3495 hypothetical protein YP_003061495.1 heat shock protein involved in degradation of misfolded proteins YP_003061496.1 KEGG: gsu:GSU0946 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003061497.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_003061498.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: ccs:CCNA_03851 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003061499.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: bcs:BCAN_A2130 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_003061500.1 PFAM: pirin; KEGG: hch:HCH_05510 pirin-related protein YP_003061501.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; acetyl xylan esterase; KEGG: sde:Sde_0061 prolyl oligopeptidase family protein YP_003061502.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: rsq:Rsph17025_2252 imidazole glycerol phosphate synthase subunit HisF YP_003061503.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bbt:BBta_0141 phosphoribosyl-ATP pyrophosphatase YP_003061504.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: pzu:PHZ_c0009 hypothetical protein YP_003061505.1 PFAM: MltA domain protein; 3D domain protein; KEGG: mms:mma_0239 membrane-bound transglycolase YP_003061506.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: pzu:PHZ_c0007 hypothetical protein YP_003061507.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: ccs:CCNA_03858 protein translocase subunit SecB YP_003061508.1 KEGG: rsq:Rsph17025_2673 DNA polymerase III epsilon subunit; TIGRFAM: DNA polymerase III subunit epsilon; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease YP_003061509.1 KEGG: ccs:CCNA_00004 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003061510.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; KEGG: bxe:Bxe_A0539 shikimate 5-dehydrogenase YP_003061511.1 PFAM: Maf family protein; KEGG: ccs:CCNA_00002 septum formation protein Maf YP_003061512.1 PFAM: protein of unknown function DUF299; KEGG: pzu:PHZ_c0001 hypothetical protein YP_003061513.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_003061514.1 KEGG: ccs:CCNA_03878 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase YP_003061515.1 PFAM: conserved hypothetical protein; KEGG: bja:bll0636 hypothetical protein YP_003061516.1 KEGG: pla:Plav_1260 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; ribonuclease B OB region domain; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; ATPase AAA YP_003061517.1 PFAM: arsenate reductase; KEGG: pla:Plav_1642 arsenate reductase YP_003061518.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: cak:Caul_5023 tRNA modification GTPase TrmE YP_003061519.1 PFAM: glycosyl transferase family 2; KEGG: mch:Mchl_3992 glycosyl transferase family 2 YP_003061520.1 KEGG: bxe:Bxe_A3797 hypothetical protein YP_003061521.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: oan:Oant_2719 dTDP-glucose 4,6-dehydratase YP_003061522.1 KEGG: oan:Oant_2720 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003061523.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: asa:ASA_1424 glucose-1-phosphate thymidylyltransferase YP_003061524.1 PFAM: glycosyl transferase family 2; KEGG: cak:Caul_4940 glycosyl transferase family protein YP_003061525.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: sme:SMa1985 epimerase YP_003061526.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xcb:XC_3796 LysR family transcriptional regulator YP_003061527.1 PFAM: peptidase M48 Ste24p; KEGG: cak:Caul_3512 peptidase M48 Ste24p YP_003061528.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ccs:CCNA_02437 transcriptional regulator, LysR family YP_003061529.1 KEGG: dal:Dalk_5141 hypothetical protein YP_003061530.1 PFAM: acyltransferase 3; KEGG: smd:Smed_1772 acyltransferase 3 YP_003061531.1 KEGG: dat:HRM2_08560 hypothetical protein YP_003061532.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nha:Nham_3644 LysR family transcriptional regulator YP_003061533.1 PFAM: acyltransferase 3; KEGG: pla:Plav_1946 acyltransferase 3 YP_003061534.1 KEGG: pcr:Pcryo_0448 hypothetical protein YP_003061535.1 KEGG: mlo:mlr9393 hypothetical protein YP_003061536.1 KEGG: cps:CPS_3023 hypothetical protein YP_003061537.1 KEGG: rsq:Rsph17025_4401 plasmid replication initiator protein-like protein YP_003061539.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCVb0021 plasmid partitioning-family protein YP_003061540.1 KEGG: hypothetical protein YP_003061541.1 PFAM: protein of unknown function DUF805; KEGG: ppr:PBPRA2479 hypothetical protein YP_003061542.1 PFAM: Tetratricopeptide TPR_2 repeat protein; sulfotransferase; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_4275 TPR domain/sulfotransferase domain-containing protein YP_003061543.1 SMART: Sel1 domain protein repeat-containing protein; KEGG: hiq:CGSHiGG_00130 Sel1 domain-containing protein YP_003061544.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bja:bll1985 HipA protein YP_003061545.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bja:bsl1986 transcriptional regulator YP_003061546.1 PFAM: Phosphoglycerate mutase; KEGG: mlo:mlr4643 phosphoglyceromutase YP_003061547.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_003061548.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_003061549.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pat:Patl_3547 response regulator receiver protein YP_003061550.1 KEGG: pat:Patl_0735 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_003061551.1 KEGG: atc:AGR_L_531 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; Male sterility domain; NAD-dependent epimerase/dehydratase YP_003061552.1 PFAM: glycosyl transferase group 1; KEGG: rpt:Rpal_3768 glycosyl transferase group 1 YP_003061553.1 KEGG: sbo:SBO_0857 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase ; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_003061555.1 KEGG: cja:CJA_1621 hypothetical protein YP_003061556.1 KEGG: cak:Caul_1208 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein YP_003061557.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1236 UDP-galactose 4-epimerase YP_003061558.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ade:Adeh_0234 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003061559.1 PFAM: acriflavin resistance protein; KEGG: pla:Plav_0175 acriflavin resistance protein YP_003061560.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cja:CJA_2370 RND efflux membrane fusion protein YP_003061561.1 PFAM: ROK family protein; KEGG: sde:Sde_2639 fructokinase YP_003061562.1 PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_0063 major facilitator superfamily MFS_1 YP_003061563.1 KEGG: sde:Sde_3961 hypothetical protein YP_003061564.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ccs:CCNA_01195 transcriptional regulator, LacI family YP_003061565.1 PFAM: tryptophan halogenase; FAD dependent oxidoreductase; KEGG: cak:Caul_0297 tryptophan halogenase YP_003061566.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3617 TonB-dependent outer membrane receptor YP_003061567.1 KEGG: smt:Smal_0513 hypothetical protein YP_003061568.1 PFAM: glycosyl transferase family 2; KEGG: met:M446_0943 glycosyl transferase family protein YP_003061569.1 PFAM: GtrA family protein; KEGG: cff:CFF8240_1391 GtrA family protein YP_003061570.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase family protein YP_003061571.1 PFAM: glycosyl transferase family 2; KEGG: swd:Swoo_1995 glycosyl transferase family protein YP_003061572.1 KEGG: swd:Swoo_1994 hypothetical protein YP_003061573.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: swd:Swoo_1993 phosphoribulokinase/uridine kinase YP_003061574.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: swd:Swoo_1992 hydrolase YP_003061575.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdn:Sden_3104 methyltransferase type 12 YP_003061576.1 PFAM: GtrA family protein; KEGG: mlo:mll3086 hypothetical protein YP_003061577.1 KEGG: swd:Swoo_1996 hypothetical protein YP_003061578.1 KEGG: sfv:SFV_2780 formate hydrogenlyase subunit 3 YP_003061579.1 PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO4804 putative aldolase/epimerase (AraD-like) YP_003061580.1 PFAM: glycosyl transferase family 2; KEGG: ppf:Pput_3926 glycosyl transferase family protein YP_003061581.1 KEGG: dac:Daci_3689 hypothetical protein YP_003061583.1 PFAM: ABC-2 type transporter; KEGG: cak:Caul_4931 ABC-2 type transporter protein YP_003061584.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cak:Caul_4932 ABC transporter related YP_003061585.1 KEGG: mlo:mll8033 hypothetical protein YP_003061586.1 KEGG: cak:Caul_3627 hypothetical protein