-- dump date 20140619_115656 -- class Genbank::CDS -- table cds_note -- id note YP_758735.1 identified by similarity to GB:CAE25742.1; match to protein family HMM PF03618 YP_758736.1 identified by similarity to SP:Q02169; match to protein family HMM PF02545 YP_758737.1 identified by similarity to SP:P15770; match to protein family HMM PF01488; match to protein family HMM TIGR00507 YP_758738.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_758739.1 identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406 YP_758740.1 identified by match to protein family HMM PF02556; match to protein family HMM TIGR00809 YP_758741.1 identified by match to protein family HMM PF04280 YP_758742.1 identified by similarity to GB:AAF42553.1; match to protein family HMM PF03562; match to protein family HMM PF06725 YP_758743.1 identified by match to protein family HMM PF01713 YP_758744.1 identified by similarity to PIR:D97688; match to protein family HMM PF06242 YP_758745.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824 YP_758746.1 identified by similarity to GB:CAE26360.1 YP_758747.1 identified by similarity to GB:AAK25257.1; match to protein family HMM PF07323 YP_758748.1 identified by match to protein family HMM PF00440 YP_758749.1 identified by match to protein family HMM PF00484 YP_758750.1 identified by match to protein family HMM PF00719 YP_758751.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_758752.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_758753.1 identified by match to protein family HMM PF02627 YP_758754.1 identified by similarity to PIR:AC2682 YP_758755.1 identified by match to protein family HMM TIGR02466 YP_758758.1 identified by similarity to GB:BAC48418.1 YP_758759.1 identified by match to protein family HMM PF00440 YP_758760.1 identified by similarity to GB:AAK24228.1 YP_758761.1 identified by similarity to SP:P29209; match to protein family HMM PF00011 YP_758762.1 identified by similarity to PIR:S76871 YP_758763.1 identified by similarity to SP:Q9R9N1; match to protein family HMM PF00534 YP_758764.1 identified by match to protein family HMM PF00383 YP_758765.1 identified by similarity to SP:P30798; match to protein family HMM PF00300; match to protein family HMM TIGR01258 YP_758766.1 identified by match to protein family HMM PF07221 YP_758768.1 identified by similarity to SP:Q06903; match to protein family HMM PF00326; match to protein family HMM PF02897 YP_758769.1 identified by similarity to GB:CAH11471.1 YP_758770.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_758771.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795 YP_758772.1 identified by similarity to SP:P21474; match to protein family HMM PF00886; match to protein family HMM TIGR00002 YP_758773.1 identified by match to protein family HMM PF01757 YP_758774.1 identified by match to protein family HMM PF00030 YP_758775.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273 YP_758777.1 identified by match to protein family HMM PF00535 YP_758778.1 identified by similarity to SP:P03819; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932 YP_758779.1 identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088 YP_758780.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_758781.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_758782.1 identified by similarity to SP:P36569; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_758783.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_758784.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_758785.1 identified by match to protein family HMM PF00903 YP_758786.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_758790.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_758791.1 identified by match to protein family HMM PF04909 YP_758792.1 identified by match to protein family HMM PF01022 YP_758793.1 identified by similarity to PIR:AC2826 YP_758794.1 identified by similarity to GB:AAM31296.1 YP_758795.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_758796.1 identified by match to protein family HMM PF04073 YP_758798.1 identified by similarity to SP:P50935; match to protein family HMM PF01503 YP_758799.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_758800.1 identified by match to protein family HMM PF00977; match to protein family HMM TIGR00735 YP_758802.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_758803.1 identified by similarity to PIR:AC1282 YP_758804.1 identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007 YP_758805.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR01855 YP_758806.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_758807.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_758808.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_758810.1 identified by similarity to GB:CAD17468.1 YP_758812.1 identified by similarity to GB:AAB58884.1; match to protein family HMM PF03328 YP_758813.1 identified by match to protein family HMM PF01679 YP_758814.1 identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_758815.1 identified by similarity to SP:P24167; match to protein family HMM PF01202 YP_758816.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_758817.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_758818.1 identified by match to protein family HMM PF01722 YP_758819.1 identified by match to protein family HMM PF00226 YP_758821.1 identified by similarity to GB:CAD16401.1 YP_758822.1 identified by match to protein family HMM PF00577 YP_758824.1 identified by similarity to SP:P34943; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_758825.1 identified by match to protein family HMM PF02673 YP_758826.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_758827.1 identified by similarity to SP:Q05755; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_758828.1 identified by similarity to GB:AAM41903.1 YP_758829.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01409 YP_758830.1 identified by match to protein family HMM PF01039 YP_758831.1 identified by match to protein family HMM PF02036 YP_758832.1 identified by match to protein family HMM PF00561 YP_758833.1 identified by similarity to SP:P19409; match to protein family HMM PF00501 YP_758834.1 identified by match to protein family HMM PF00107 YP_758835.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_758837.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_758838.1 identified by match to protein family HMM PF02562 YP_758839.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_758840.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471 YP_758841.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546 YP_758842.1 identified by match to protein family HMM PF01381 YP_758843.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_758844.1 identified by match to protein family HMM PF00313 YP_758845.1 identified by similarity to SP:Q92SW6; match to protein family HMM PF02576 YP_758846.1 identified by similarity to SP:P03003; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954 YP_758847.1 identified by similarity to GB:AAK22031.1; match to protein family HMM PF04296 YP_758848.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_758849.1 identified by similarity to SP:P32731; match to protein family HMM PF02033; match to protein family HMM TIGR00082 YP_758851.1 identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431 YP_758854.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_758855.1 identified by similarity to GB:AAQ62364.1 YP_758856.1 identified by similarity to GB:AAQ62365.1 YP_758857.1 identified by similarity to GB:AAG10465.1 YP_758859.1 identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963 YP_758860.1 identified by match to protein family HMM PF03994 YP_758862.1 identified by match to protein family HMM PF00215; match to protein family HMM TIGR02127 YP_758863.1 identified by similarity to SP:P28036; match to protein family HMM PF00034; match to protein family HMM PF01011 YP_758866.1 identified by match to protein family HMM PF02798 YP_758867.1 identified by match to protein family HMM PF03795 YP_758868.1 identified by match to protein family HMM PF00440 YP_758870.1 identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329 YP_758871.1 identified by match to protein family HMM PF04264 YP_758872.1 identified by similarity to PIR:AI2479 YP_758873.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_758877.1 identified by match to protein family HMM PF00355 YP_758878.1 identified by match to protein family HMM PF02469 YP_758879.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_758880.1 identified by similarity to SP:Q51425; match to protein family HMM PF01330; match to protein family HMM PF07499 YP_758881.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_758882.1 identified by similarity to GB:AAK23005.1 YP_758884.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_758885.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_758886.1 identified by match to protein family HMM PF02472 YP_758887.1 identified by similarity to PIR:H98270 YP_758888.1 identified by similarity to SP:Q93TG4; match to protein family HMM PF04052; match to protein family HMM PF07676; match to protein family HMM TIGR02800 YP_758889.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802 YP_758890.1 identified by similarity to GB:AAK25190.1; match to protein family HMM TIGR02795 YP_758891.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432 YP_758892.1 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_758893.1 identified by similarity to GB:AAM42303.1 YP_758895.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_758896.1 identified by match to protein family HMM PF02515 YP_758897.1 identified by similarity to SP:P73436; match to protein family HMM PF02696 YP_758898.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_758899.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_758900.1 identified by match to protein family HMM PF07859 YP_758901.1 identified by similarity to GB:CAB60226.1; match to protein family HMM PF00501 YP_758902.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455 YP_758903.1 identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331 YP_758904.1 identified by similarity to SP:O08437; similarity to SP:P39311; match to protein family HMM PF00254 YP_758905.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_758906.1 identified by similarity to SP:P75796; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_758907.1 identified by similarity to SP:P17266; match to protein family HMM PF03922 YP_758908.1 identified by similarity to GB:AAC41425.1; match to protein family HMM PF00465 YP_758909.1 identified by similarity to GB:AAV94429.1 YP_758910.1 identified by similarity to SP:P42094; match to protein family HMM PF02333 YP_758911.1 identified by match to protein family HMM PF05235 YP_758914.1 identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_758915.1 identified by similarity to SP:P37887; match to protein family HMM PF00291 YP_758916.1 identified by match to protein family HMM PF01037 YP_758918.1 identified by similarity to SP:P24198; match to protein family HMM PF02535 YP_758920.1 identified by match to protein family HMM PF00005 YP_758921.1 identified by match to protein family HMM PF02687 YP_758923.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_758924.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_758925.1 identified by similarity to SP:Q06607; match to protein family HMM PF00216; match to protein family HMM TIGR00988 YP_758926.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_758927.1 identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017 YP_758928.1 identified by match to protein family HMM PF00724 YP_758929.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_758930.1 identified by similarity to GB:AAK25552.1; match to protein family HMM TIGR02300 YP_758931.1 identified by similarity to GB:AAK25555.1 YP_758933.1 identified by similarity to GB:AAN55945.1 YP_758934.1 identified by match to protein family HMM PF02639 YP_758935.1 identified by match to protein family HMM PF01612 YP_758936.1 identified by similarity to GB:AAK25564.1 YP_758937.1 identified by match to protein family HMM PF03968 YP_758938.1 identified by similarity to GB:AAK25562.1; match to protein family HMM PF00005 YP_758939.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_758940.1 identified by similarity to SP:P36945; match to protein family HMM PF00294 YP_758941.1 identified by match to protein family HMM PF01156 YP_758942.1 identified by similarity to GB:CAE78626.1 YP_758944.1 identified by match to protein family HMM PF00873 YP_758945.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_758946.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_758947.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_758948.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_758949.1 identified by match to protein family HMM PF00149 YP_758950.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_758951.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_758952.1 identified by match to protein family HMM PF04773 YP_758953.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715 YP_758954.1 identified by match to protein family HMM PF01804 YP_758955.1 identified by match to protein family HMM PF01839 YP_758957.1 identified by match to protein family HMM PF07446 YP_758958.1 identified by match to protein family HMM PF00459 YP_758959.1 identified by match to protein family HMM PF01381 YP_758960.1 identified by match to protein family HMM PF05013 YP_758961.1 identified by match to protein family HMM PF00072 YP_758962.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_758963.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_758968.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_758969.1 identified by similarity to GB:AAK24540.1 YP_758970.1 identified by similarity to GB:AAS95392.1 YP_758973.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_758975.1 identified by match to protein family HMM PF01052 YP_758976.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_758977.1 identified by match to protein family HMM PF01706 YP_758978.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_758980.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_758981.1 identified by similarity to SP:P35806; match to protein family HMM PF00460; match to protein family HMM PF06429 YP_758982.1 identified by similarity to SP:P09349; match to protein family HMM PF00691 YP_758983.1 identified by similarity to GB:BAB49920.1; match to protein family HMM PF01052 YP_758984.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_758986.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of this and other flagella genes YP_758987.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_758988.1 identified by match to protein family HMM PF03240 YP_758989.1 identified by match to protein family HMM PF02107 YP_758991.1 identified by similarity to SP:P16321; match to protein family HMM PF03963 YP_758992.1 identified by similarity to GB:AAC33327.1; match to protein family HMM PF02120 YP_758995.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_758997.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_758999.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545 YP_759000.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_759001.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429 YP_759003.1 identified by similarity to SP:P33134; match to protein family HMM PF01313 YP_759004.1 membrane protein involved in the flagellar export apparatus YP_759005.1 identified by similarity to SP:Q45975 YP_759006.1 identified by match to protein family HMM PF01312 YP_759009.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_759010.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_759011.1 identified by match to protein family HMM PF01590 YP_759012.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_759014.1 identified by similarity to SP:P55386 YP_759015.1 identified by similarity to GB:AAM71921.1 YP_759016.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_759017.1 identified by similarity to GB:CAI07457.1 YP_759020.1 identified by similarity to GB:CAD63078.1 YP_759021.1 identified by similarity to GB:AAN69291.1 YP_759022.1 identified by match to protein family HMM PF00589 YP_759023.1 identified by similarity to SP:P32695; match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_759024.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_759025.1 identified by similarity to SP:P36670 YP_759026.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_759027.1 identified by similarity to SP:P10339; match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 YP_759028.1 identified by match to protein family HMM PF00903 YP_759029.1 identified by match to protein family HMM PF00561 YP_759031.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_759032.1 identified by match to protein family HMM PF04972 YP_759033.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_759034.1 identified by similarity to GB:CAE25611.1; match to protein family HMM PF02590 YP_759036.1 identified by match to protein family HMM PF04397 YP_759039.1 identified by match to protein family HMM PF07690 YP_759040.1 identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 YP_759041.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_759042.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_759043.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347 YP_759044.1 identified by similarity to GB:BAC88477.1 YP_759045.1 identified by match to protein family HMM PF02798 YP_759047.1 identified by match to protein family HMM PF01817 YP_759051.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_759052.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470 YP_759054.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_759055.1 identified by similarity to GB:AAC46385.1; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_759056.1 identified by similarity to GB:AAU91667.1; match to protein family HMM PF06073 YP_759057.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_759058.1 identified by match to protein family HMM PF00588 YP_759059.1 identified by similarity to GB:AAU49484.1 YP_759060.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_759061.1 identified by match to protein family HMM PF03969 YP_759062.1 identified by match to protein family HMM PF01694 YP_759063.1 identified by match to protein family HMM PF00072 YP_759065.1 identified by match to protein family HMM PF01553 YP_759066.1 identified by match to protein family HMM PF00583 YP_759067.1 identified by similarity to SP:P36670; match to protein family HMM PF07690 YP_759068.1 identified by similarity to GB:BAB49793.1 YP_759069.1 identified by match to protein family HMM TIGR02226 YP_759070.1 identified by similarity to PIR:C97630 YP_759072.1 identified by match to protein family HMM PF07726 YP_759073.1 identified by similarity to PIR:AG3309; match to protein family HMM PF06938 YP_759074.1 identified by match to protein family HMM PF00293 YP_759076.1 identified by match to protein family HMM PF01743 YP_759077.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR02609 YP_759078.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_759079.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_759080.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416 YP_759081.1 identified by similarity to SP:P08502; match to protein family HMM PF00032; match to protein family HMM PF00033 YP_759082.1 identified by similarity to SP:P23135; match to protein family HMM PF02167 YP_759083.1 identified by match to protein family HMM PF00583 YP_759084.1 identified by match to protein family HMM PF00896; match to protein family HMM TIGR01694 YP_759086.1 identified by similarity to GB:AAK24445.1 YP_759087.1 identified by match to protein family HMM PF02469 YP_759088.1 identified by match to protein family HMM PF02469 YP_759089.1 identified by match to protein family HMM PF02469 YP_759090.1 identified by match to protein family HMM PF00226 YP_759092.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_759093.1 identified by similarity to GB:CAE29801.1; match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_759094.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_759095.1 identified by similarity to GB:AAM36520.1 YP_759100.1 identified by similarity to SP:Q9XAI4; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615 YP_759101.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_759102.1 identified by similarity to GB:AAB61695.1; match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_759103.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_759104.1 identified by similarity to GB:AAN58344.1 YP_759105.1 identified by match to protein family HMM PF00160 YP_759107.1 identified by match to protein family HMM PF05154 YP_759108.1 identified by match to protein family HMM PF05239 YP_759109.1 identified by similarity to SP:P28637; match to protein family HMM PF06325 YP_759111.1 identified by match to protein family HMM PF00557 YP_759113.1 identified by match to protein family HMM PF01120 YP_759114.1 identified by similarity to GB:AAS95207.1 YP_759116.1 identified by similarity to SP:P28719; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_759117.1 identified by similarity to SP:Q50985 YP_759118.1 identified by match to protein family HMM PF01381 YP_759119.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_759120.1 identified by similarity to GB:AAC44223.1; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065 YP_759121.1 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_759122.1 identified by match to protein family HMM PF03799 YP_759123.1 identified by match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205 YP_759124.1 identified by similarity to GB:AAK22211.1; match to protein family HMM PF07715 YP_759125.1 identified by similarity to SP:O28592 YP_759126.1 identified by match to protein family HMM TIGR02391 YP_759127.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179 YP_759129.1 identified by similarity to SP:Q9RQQ9; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_759130.1 identified by match to protein family HMM PF00375 YP_759131.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970 YP_759132.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_759134.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_759135.1 identified by match to protein family HMM PF00165 YP_759136.1 identified by match to protein family HMM PF00849 YP_759137.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_759138.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_759140.1 identified by similarity to GB:CAG18846.1 YP_759141.1 identified by match to protein family HMM PF00144 YP_759142.1 identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030 YP_759143.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_759144.1 identified by match to protein family HMM PF02096 YP_759145.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_759146.1 identified by match to protein family HMM PF00583 YP_759148.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761 YP_759149.1 identified by similarity to GB:BAC53367.1 YP_759150.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993 YP_759151.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_759152.1 identified by similarity to GB:BAC68232.1 YP_759153.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07536 YP_759154.1 identified by match to protein family HMM PF00561 YP_759155.1 identified by match to protein family HMM PF00534 YP_759156.1 identified by match to protein family HMM PF01075 YP_759157.1 identified by similarity to GB:AAK25319.1 YP_759158.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_759159.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07536 YP_759160.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_759161.1 identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032 YP_759163.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_759164.1 identified by similarity to PIR:H85525; match to protein family HMM PF06171 YP_759165.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_759166.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_759167.1 identified by similarity to SP:Q52419; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 YP_759168.1 identified by match to protein family HMM PF03610 YP_759169.1 identified by similarity to SP:P23537; match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_759170.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_759171.1 identified by similarity to GB:AAK23517.1 YP_759172.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_759173.1 identified by similarity to GB:CAE09532.1 YP_759174.1 identified by match to protein family HMM PF04519 YP_759175.1 identified by match to protein family HMM PF01183 YP_759176.1 identified by match to protein family HMM PF00583 YP_759177.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_759179.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_759181.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_759182.1 identified by similarity to SP:P38436; match to protein family HMM PF01715; match to protein family HMM TIGR00174 YP_759183.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_759184.1 identified by match to protein family HMM PF00293 YP_759185.1 identified by similarity to GB:AAL22149.1; match to protein family HMM PF06104 YP_759186.1 identified by match to protein family HMM PF01066 YP_759187.1 identified by similarity to GB:AAK22186.1 YP_759188.1 identified by similarity to GB:AAK22186.1 YP_759189.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_759191.1 identified by similarity to GB:BAB53131.1; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_759193.1 identified by similarity to SP:P04174; match to protein family HMM PF00186 YP_759195.1 identified by match to protein family HMM PF01042 YP_759198.1 identified by similarity to GB:BAC49007.1 YP_759199.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_759200.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_759202.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_759203.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_759204.1 identified by match to protein family HMM PF00106 YP_759205.1 identified by similarity to SP:O50584; match to protein family HMM PF01212 YP_759206.1 identified by match to protein family HMM PF00478; match to protein family HMM PF03060 YP_759209.1 identified by match to protein family HMM PF03631 YP_759210.1 identified by match to protein family HMM PF01510 YP_759211.1 identified by similarity to GB:AAK24538.1; match to protein family HMM PF00892 YP_759212.1 identified by match to protein family HMM PF00665 YP_759213.1 identified by match to protein family HMM PF00753 YP_759214.1 identified by match to protein family HMM PF01925 YP_759215.1 identified by similarity to GB:CAE39528.1 YP_759217.1 identified by similarity to GB:BAC90287.1 YP_759218.1 identified by similarity to PIR:AG3273; match to protein family HMM PF04543 YP_759219.1 identified by similarity to GB:CAD31353.1 YP_759220.1 identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_759221.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254 YP_759222.1 identified by similarity to SP:P02981; match to protein family HMM PF00083; match to protein family HMM PF07690 YP_759224.1 identified by similarity to GB:AAK24045.1 YP_759226.1 identified by similarity to GB:BAC53108.1 YP_759227.1 identified by match to protein family HMM PF03992 YP_759228.1 identified by similarity to GB:AAK23436.1; match to protein family HMM PF00004; match to protein family HMM PF07728 YP_759229.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_759230.1 identified by similarity to GB:AAD39949.1 YP_759231.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_759233.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420 YP_759235.1 identified by match to protein family HMM PF04264 YP_759236.1 identified by match to protein family HMM PF05960 YP_759237.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_759238.1 identified by match to protein family HMM PF00561 YP_759239.1 identified by match to protein family HMM PF03767 YP_759240.1 identified by match to protein family HMM PF00478; match to protein family HMM PF03060 YP_759241.1 identified by match to protein family HMM PF02646 YP_759242.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_759243.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_759244.1 identified by match to protein family HMM PF00583 YP_759245.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 YP_759246.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_759247.1 identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118 YP_759248.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_759249.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_759250.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_759252.1 identified by match to protein family HMM PF01106 YP_759253.1 identified by match to protein family HMM PF00881 YP_759254.1 identified by match to protein family HMM PF00814 YP_759255.1 identified by similarity to SP:P36928 YP_759256.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_759257.1 identified by match to protein family HMM PF01738 YP_759258.1 identified by similarity to GB:AAC32180.1; match to protein family HMM PF01475 YP_759259.1 identified by similarity to GB:CAE33394.1; match to protein family HMM PF07995 YP_759260.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_759261.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_759262.1 identified by similarity to GB:AAW61285.1 YP_759263.1 identified by match to protein family HMM PF01242 YP_759264.1 identified by match to protein family HMM PF00924 YP_759266.1 identified by similarity to GB:CAE26354.1; match to protein family HMM PF02678 YP_759268.1 identified by match to protein family HMM PF00665 YP_759269.1 identified by match to protein family HMM PF01527 YP_759270.1 identified by match to protein family HMM PF07751 YP_759271.1 identified by similarity to GB:AAA24517.1; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_759272.1 identified by match to protein family HMM PF00574 YP_759273.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_759274.1 identified by match to protein family HMM PF01734 YP_759275.1 identified by match to protein family HMM PF01266 YP_759277.1 identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_759278.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_759280.1 identified by similarity to GB:BAB47714.1 YP_759281.1 negatively supercoils closed circular double-stranded DNA YP_759282.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_759283.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_759284.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821 YP_759287.1 identified by match to protein family HMM PF00903 YP_759288.1 identified by similarity to GB:CAC46585.1; match to protein family HMM PF04828 YP_759289.1 identified by similarity to SP:P45382; match to protein family HMM PF00107; match to protein family HMM TIGR02818 YP_759290.1 identified by similarity to GB:AAB51449.1; match to protein family HMM TIGR00611 YP_759291.1 identified by match to protein family HMM PF03992 YP_759292.1 binds the polymerase to DNA and acts as a sliding clamp YP_759293.1 identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362 YP_759294.1 identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029 YP_759295.1 identified by similarity to SP:P14604; match to protein family HMM PF00378 YP_759296.1 identified by match to protein family HMM PF03109 YP_759297.1 identified by match to protein family HMM PF01569 YP_759298.1 identified by match to protein family HMM PF00067 YP_759299.1 identified by match to protein family HMM PF00440 YP_759300.1 identified by match to protein family HMM PF00301 YP_759302.1 identified by match to protein family HMM PF03061 YP_759303.1 identified by match to protein family HMM PF03741 YP_759304.1 identified by similarity to SP:P17551; match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_759306.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_759307.1 identified by match to protein family HMM PF00587 YP_759308.1 identified by match to protein family HMM PF01634 YP_759309.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_759310.1 identified by similarity to GB:AAU48428.1 YP_759311.1 identified by match to protein family HMM PF00196 YP_759312.1 identified by match to protein family HMM PF03583 YP_759313.1 identified by match to protein family HMM PF00795 YP_759314.1 identified by match to protein family HMM PF00278 YP_759317.1 identified by match to protein family HMM PF03435 YP_759318.1 identified by match to protein family HMM PF03992 YP_759320.1 identified by similarity to GB:CAC45198.1; match to protein family HMM PF04226 YP_759321.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_759322.1 identified by match to protein family HMM PF04055 YP_759323.1 identified by similarity to SP:P45803; match to protein family HMM PF01430 YP_759324.1 identified by match to protein family HMM PF00106 YP_759325.1 identified by similarity to GB:CAE26245.1 YP_759326.1 identified by match to protein family HMM PF00924 YP_759327.1 identified by match to protein family HMM PF00924 YP_759328.1 identified by similarity to GB:AAS82400.1 YP_759329.1 identified by match to protein family HMM PF00089 YP_759330.1 identified by match to protein family HMM PF00144 YP_759333.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_759334.1 identified by match to protein family HMM PF01757 YP_759335.1 identified by similarity to GB:AAK22190.1 YP_759338.1 identified by similarity to GB:BAC46414.1 YP_759339.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_759340.1 identified by match to protein family HMM PF00717 YP_759342.1 identified by match to protein family HMM PF00282 YP_759343.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_759344.1 identified by match to protein family HMM PF07690 YP_759345.1 identified by similarity to GB:CAG19473.1; match to protein family HMM PF06041 YP_759346.1 identified by match to protein family HMM TIGR01983 YP_759347.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_759348.1 identified by similarity to SP:P37177; match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_759350.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_759351.1 identified by similarity to PIR:B69520 YP_759352.1 identified by similarity to PIR:C69520 YP_759354.1 identified by similarity to PIR:AI2479 YP_759355.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_759356.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03476 YP_759358.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_759359.1 identified by similarity to GB:BAB50321.1 YP_759360.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_759361.1 identified by match to protein family HMM PF01551 YP_759362.1 identified by match to protein family HMM PF01551 YP_759363.1 identified by similarity to GB:AAK25513.1 YP_759364.1 identified by similarity to GB:AAN55110.1 YP_759365.1 identified by similarity to SP:P76076 YP_759367.1 identified by similarity to GB:BAB49848.1 YP_759368.1 identified by similarity to SP:Q51455; match to protein family HMM PF00072 YP_759369.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_759370.1 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420 YP_759371.1 identified by similarity to GB:AAK24813.1; match to protein family HMM PF06258 YP_759372.1 identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_759373.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369 YP_759377.1 identified by match to protein family HMM PF05433 YP_759378.1 identified by match to protein family HMM PF00753 YP_759379.1 identified by match to protein family HMM PF01435 YP_759380.1 identified by match to protein family HMM PF00440 YP_759381.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_759382.1 identified by similarity to GB:AAW60109.1; match to protein family HMM PF07045 YP_759383.1 identified by similarity to GB:AAK22343.1 YP_759384.1 identified by similarity to SP:P32692 YP_759385.1 identified by match to protein family HMM PF01047 YP_759386.1 identified by match to protein family HMM PF00877 YP_759387.1 identified by match to protein family HMM PF00034 YP_759388.1 identified by match to protein family HMM PF00800 YP_759389.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_759390.1 identified by similarity to GB:AAS72102.1 YP_759391.1 identified by match to protein family HMM PF04945 YP_759393.1 identified by match to protein family HMM PF00293 YP_759395.1 identified by similarity to SP:Q9ZG88; match to protein family HMM PF01471 YP_759396.1 identified by match to protein family HMM PF00376 YP_759397.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_759398.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_759399.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_759400.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_759401.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_759402.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_759403.1 identified by match to protein family HMM PF01520 YP_759404.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_759405.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154 YP_759406.1 identified by match to protein family HMM PF00953 YP_759407.1 identified by match to protein family HMM PF00348 YP_759408.1 identified by similarity to GB:AAK23266.1 YP_759409.1 identified by similarity to PIR:AG3443 YP_759412.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_759414.1 identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211 YP_759415.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_759416.1 identified by match to protein family HMM PF07486 YP_759417.1 identified by match to protein family HMM PF00106 YP_759418.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_759419.1 catalyzes the formation of oxaloacetate from L-aspartate YP_759421.1 identified by match to protein family HMM PF02445; match to protein family HMM TIGR00550 YP_759423.1 identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_759424.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_759425.1 identified by similarity to SP:P50061; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_759428.1 identified by match to protein family HMM PF03279 YP_759429.1 identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682 YP_759430.1 identified by match to protein family HMM PF04413 YP_759431.1 identified by similarity to GB:AAN33418.1; match to protein family HMM PF04028 YP_759432.1 identified by match to protein family HMM PF00702 YP_759433.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_759434.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_759435.1 identified by similarity to SP:P23189; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424 YP_759436.1 identified by match to protein family HMM PF01656 YP_759437.1 identified by similarity to SP:P29976; match to protein family HMM PF01474; match to protein family HMM TIGR01358 YP_759438.1 identified by match to protein family HMM PF02517 YP_759439.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_759440.1 identified by similarity to SP:P08821; match to protein family HMM PF00216 YP_759441.1 identified by similarity to GB:AAK23994.1 YP_759442.1 identified by similarity to SP:P76113; match to protein family HMM PF00107 YP_759443.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_759444.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_759445.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_759447.1 identified by match to protein family HMM PF02674 YP_759448.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_759450.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992 YP_759451.1 identified by match to protein family HMM PF00005 YP_759452.1 identified by similarity to GB:AAK25657.1; match to protein family HMM PF02405 YP_759453.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_759454.1 identified by match to protein family HMM PF07690 YP_759456.1 identified by similarity to GB:AAK22932.1 YP_759457.1 identified by match to protein family HMM PF01899 YP_759458.1 identified by match to protein family HMM PF04066 YP_759459.1 identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300 YP_759461.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_759462.1 identified by match to protein family HMM PF00420 YP_759463.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_759464.1 identified by match to protein family HMM PF00361 YP_759466.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_759467.1 identified by similarity to PIR:G97470; match to protein family HMM PF05443 YP_759468.1 identified by similarity to GB:AAV95219.1 YP_759469.1 identified by similarity to GB:AAK23042.1 YP_759472.1 identified by match to protein family HMM PF02657 YP_759473.1 identified by similarity to GB:AAK22473.1 YP_759474.1 identified by similarity to SP:Q03228; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_759476.1 identified by similarity to GB:AAK23049.1; match to protein family HMM PF07372 YP_759480.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_759481.1 identified by similarity to GB:CAA65843.1 YP_759482.1 identified by match to protein family HMM PF00005 YP_759483.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_759484.1 identified by match to protein family HMM PF05175 YP_759486.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_759487.1 identified by match to protein family HMM PF07811 YP_759488.1 identified by similarity to PIR:AE2774 YP_759489.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_759490.1 identified by similarity to GB:CAE25769.1 YP_759491.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_759492.1 identified by similarity to SP:Q8UIJ2; match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_759494.1 identified by match to protein family HMM PF00535 YP_759495.1 identified by match to protein family HMM PF00034 YP_759496.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_759497.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_759498.1 identified by match to protein family HMM PF07298 YP_759499.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_759500.1 identified by similarity to GB:BAC49315.1 YP_759502.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_759503.1 identified by match to protein family HMM PF00483 YP_759504.1 identified by match to protein family HMM PF00009; match to protein family HMM PF01583; match to protein family HMM PF03144; match to protein family HMM TIGR00455; match to protein family HMM TIGR02034 YP_759505.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_759506.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_759507.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_759508.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_759510.1 identified by match to protein family HMM PF07221 YP_759511.1 identified by match to protein family HMM PF00202; match to protein family HMM PF01041; match to protein family HMM PF01212 YP_759512.1 identified by match to protein family HMM PF01381 YP_759513.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_759514.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_759515.1 identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655 YP_759516.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_759517.1 identified by similarity to SP:P37744; match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_759518.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_759520.1 identified by similarity to GB:AAK53483.1 YP_759521.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472 YP_759522.1 identified by similarity to GB:AAS55712.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_759523.1 identified by similarity to GB:AAN67398.1; match to protein family HMM PF01061 YP_759524.1 identified by similarity to GB:AAF04381.1; match to protein family HMM PF00005 YP_759525.1 identified by match to protein family HMM TIGR01444 YP_759527.1 identified by similarity to GB:BAB53993.1 YP_759528.1 identified by similarity to SP:P17993 YP_759529.1 identified by match to protein family HMM PF00535 YP_759531.1 identified by similarity to GB:BAA92237.1; match to protein family HMM PF00534 YP_759532.1 identified by match to protein family HMM PF00535 YP_759533.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_759535.1 identified by similarity to GB:AAK25414.1 YP_759536.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_759537.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan YP_759539.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_759542.1 identified by match to protein family HMM PF00873 YP_759543.1 identified by match to protein family HMM TIGR01730 YP_759544.1 identified by similarity to SP:P13397; match to protein family HMM PF01425 YP_759545.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_759549.1 identified by similarity to PIR:S70957 YP_759550.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_759551.1 identified by match to protein family HMM PF01243; match to protein family HMM TIGR00558 YP_759552.1 identified by similarity to GB:CAC47451.1 YP_759554.1 identified by match to protein family HMM PF03009 YP_759555.1 activates fatty acids by binding to coenzyme A YP_759556.1 identified by similarity to GB:BAC46552.1 YP_759559.1 identified by match to protein family HMM PF03061 YP_759560.1 identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222 YP_759561.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_759563.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_759564.1 identified by match to protein family HMM PF03795 YP_759565.1 identified by similarity to GB:CAG76557.1; match to protein family HMM PF03235; match to protein family HMM PF07510 YP_759566.1 identified by match to protein family HMM PF01557 YP_759567.1 identified by match to protein family HMM PF00563 YP_759569.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460 YP_759570.1 identified by match to protein family HMM PF01575 YP_759571.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083 YP_759576.1 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00392 YP_759577.1 identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077 YP_759578.1 identified by similarity to GB:AAK22684.1 YP_759579.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_759580.1 identified by match to protein family HMM PF05193 YP_759581.1 identified by similarity to GB:AAK23431.1 YP_759582.1 identified by match to protein family HMM PF01966 YP_759584.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_759585.1 identified by similarity to GB:AAR33517.1 YP_759587.1 identified by similarity to SP:P05100; match to protein family HMM PF03352 YP_759588.1 identified by match to protein family HMM PF01571 YP_759589.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_759590.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_759591.1 catalyzes the conversion of ferulic acid to feruloyl-CoA YP_759592.1 thiamine-pyrophosphate requiring enzyme YP_759593.1 identified by match to protein family HMM PF00326; match to protein family HMM PF07676 YP_759594.1 identified by similarity to GB:AAQ65624.1 YP_759596.1 Catalyzes the rate-limiting step in dNTP synthesis YP_759598.1 identified by similarity to GB:AAK23529.1; match to protein family HMM PF01936 YP_759599.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_759600.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_759601.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367 YP_759602.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_759603.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_759604.1 identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191 YP_759605.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_759606.1 identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613 YP_759607.1 identified by match to protein family HMM PF06904 YP_759608.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_759609.1 identified by match to protein family HMM PF02146 YP_759610.1 identified by similarity to GB:AAS71142.1 YP_759611.1 identified by match to protein family HMM PF01022 YP_759612.1 identified by match to protein family HMM PF01988 YP_759613.1 identified by match to protein family HMM PF04011 YP_759616.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212 YP_759617.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_759618.1 identified by match to protein family HMM PF04290 YP_759619.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409 YP_759620.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_759621.1 identified by match to protein family HMM PF00691 YP_759622.1 identified by similarity to SP:O33730; match to protein family HMM PF03446 YP_759623.1 identified by similarity to GB:AAS81418.1; match to protein family HMM PF04087; match to protein family HMM TIGR00341 YP_759624.1 identified by match to protein family HMM PF00254 YP_759625.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_759626.1 identified by match to protein family HMM PF00583 YP_759627.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_759628.1 identified by match to protein family HMM PF00106 YP_759629.1 identified by match to protein family HMM PF03009 YP_759630.1 identified by match to protein family HMM PF00042 YP_759631.1 identified by match to protein family HMM PF01292 YP_759632.1 identified by match to protein family HMM PF02668 YP_759633.1 identified by similarity to GB:AAN34286.1 YP_759634.1 identified by match to protein family HMM PF00378 YP_759635.1 identified by match to protein family HMM PF00893 YP_759637.1 identified by similarity to GB:AAN68336.1; match to protein family HMM PF07566 YP_759639.1 identified by match to protein family HMM PF00034 YP_759640.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_759641.1 identified by match to protein family HMM PF00144 YP_759642.1 identified by match to protein family HMM PF03372 YP_759643.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_759645.1 identified by match to protein family HMM PF04299 YP_759647.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 YP_759648.1 identified by similarity to SP:P64840 YP_759649.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_759650.1 identified by match to protein family HMM PF00107 YP_759651.1 identified by match to protein family HMM PF00106 YP_759654.1 identified by match to protein family HMM PF00440 YP_759655.1 identified by similarity to GB:AAK24163.1 YP_759656.1 identified by similarity to GB:AAM71598.1 YP_759657.1 identified by match to protein family HMM PF01636 YP_759658.1 identified by match to protein family HMM PF07690 YP_759659.1 identified by similarity to GB:BAC47989.1 YP_759660.1 identified by similarity to GB:AAK22977.1 YP_759661.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_759662.1 identified by match to protein family HMM PF00691 YP_759663.1 identified by similarity to GB:AAK25051.1 YP_759664.1 identified by match to protein family HMM PF00378 YP_759665.1 identified by match to protein family HMM PF00067 YP_759666.1 identified by match to protein family HMM PF00067 YP_759667.1 identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_759668.1 identified by similarity to GB:AAK22673.1 YP_759670.1 identified by similarity to GB:AAC62540.2; match to protein family HMM PF01656 YP_759671.1 identified by similarity to SP:Q45994; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_759672.1 identified by match to protein family HMM PF00075 YP_759674.1 identified by similarity to SP:P29364; match to protein family HMM PF01636; match to protein family HMM TIGR00938 YP_759675.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_759676.1 identified by match to protein family HMM PF07690 YP_759677.1 identified by match to protein family HMM PF00005 YP_759679.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_759680.1 identified by match to protein family HMM PF00144 YP_759681.1 identified by match to protein family HMM PF00994 YP_759683.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_759684.1 identified by similarity to SP:Q7XA48; match to protein family HMM PF02900 YP_759685.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_759686.1 identified by match to protein family HMM PF00313 YP_759687.1 identified by similarity to GB:AAK23269.1 YP_759688.1 identified by similarity to PRF:2211222A; match to protein family HMM PF00939; match to protein family HMM TIGR00785 YP_759689.1 identified by match to protein family HMM PF00571; match to protein family HMM PF04982 YP_759690.1 identified by similarity to SP:P41407; match to protein family HMM PF02525; match to protein family HMM PF03358 YP_759692.1 identified by match to protein family HMM PF00512 YP_759693.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_759695.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_759696.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_759698.1 identified by similarity to GB:AAK24625.1; match to protein family HMM TIGR02001 YP_759699.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_759700.1 identified by match to protein family HMM PF04940 YP_759701.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_759702.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_759703.1 identified by similarity to GB:BAD78361.1; match to protein family HMM PF03724 YP_759704.1 identified by match to protein family HMM PF00743 YP_759705.1 identified by match to protein family HMM PF00378 YP_759706.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_759707.1 identified by similarity to GB:AAK22621.1 YP_759708.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_759709.1 identified by similarity to SP:P22643; match to protein family HMM PF00561 YP_759710.1 identified by match to protein family HMM PF01810 YP_759711.1 identified by similarity to SP:Q51948; match to protein family HMM PF01323 YP_759712.1 identified by match to protein family HMM PF01494 YP_759714.1 identified by match to protein family HMM PF03358; match to protein family HMM TIGR02690 YP_759715.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_759716.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_759717.1 identified by match to protein family HMM PF01022 YP_759718.1 identified by match to protein family HMM PF07690 YP_759720.1 identified by similarity to GB:BAC48148.1 YP_759721.1 identified by match to protein family HMM PF00582 YP_759722.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_759724.1 identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494 YP_759725.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_759726.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_759728.1 identified by match to protein family HMM PF07542 YP_759730.1 identified by similarity to SP:P05166; match to protein family HMM PF01039 YP_759731.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_759732.1 identified by similarity to GB:AAL94502.1 YP_759734.1 identified by similarity to GB:CAD31544.1 YP_759735.1 identified by similarity to GB:CAD31543.1 YP_759736.1 identified by match to protein family HMM PF01047 YP_759737.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_759738.1 identified by similarity to GB:BAD58667.1 YP_759739.1 identified by match to protein family HMM PF06983 YP_759740.1 identified by similarity to PIR:H95898 YP_759741.1 identified by match to protein family HMM PF00903 YP_759742.1 identified by similarity to GB:BAB54219.1 YP_759743.1 identified by similarity to GB:AAL27289.1 YP_759744.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_759745.1 identified by match to protein family HMM PF04402 YP_759746.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_759747.1 identified by match to protein family HMM PF00768 YP_759748.1 identified by match to protein family HMM TIGR01985 YP_759749.1 identified by match to protein family HMM PF07719 YP_759750.1 identified by similarity to GB:AAV82008.1 YP_759751.1 identified by match to protein family HMM PF02617 YP_759752.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM TIGR02639 YP_759753.1 identified by similarity to PIR:A44832; match to protein family HMM PF00144 YP_759754.1 identified by similarity to GB:AAN62225.1 YP_759755.1 identified by match to protein family HMM PF00581 YP_759756.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_759757.1 identified by match to protein family HMM PF00440 YP_759758.1 identified by match to protein family HMM PF00106 YP_759759.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_759760.1 identified by similarity to SP:P08306; match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866 YP_759761.1 identified by similarity to SP:P31833; match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_759762.1 converts protoheme IX and farnesyl diphosphate to heme O YP_759764.1 identified by match to protein family HMM PF04442 YP_759765.1 identified by similarity to SP:P06030; match to protein family HMM PF00510 YP_759766.1 identified by similarity to PIR:C83632 YP_759767.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260 YP_759768.1 identified by match to protein family HMM PF00583 YP_759769.1 identified by match to protein family HMM PF00563 YP_759770.1 identified by similarity to SP:P45941 YP_759771.1 identified by similarity to SP:Q9A311; match to protein family HMM PF02622 YP_759772.1 identified by match to protein family HMM PF03929 YP_759773.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_759774.1 identified by match to protein family HMM PF00578 YP_759775.1 identified by match to protein family HMM PF01145 YP_759776.1 identified by match to protein family HMM PF01957 YP_759778.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_759779.1 identified by match to protein family HMM PF00144 YP_759780.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_759781.1 identified by similarity to GB:AAM36135.1; match to protein family HMM PF05656 YP_759784.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214 YP_759785.1 identified by match to protein family HMM PF01925 YP_759786.1 identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_759787.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667 YP_759788.1 identified by similarity to SP:P30749; match to protein family HMM PF02391 YP_759789.1 identified by match to protein family HMM PF02597 YP_759790.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_759791.1 identified by match to protein family HMM PF02625 YP_759792.1 identified by similarity to SP:P77489; match to protein family HMM PF01315; match to protein family HMM PF02738 YP_759793.1 identified by similarity to SP:P77324; match to protein family HMM PF00941 YP_759794.1 identified by similarity to SP:P77165; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_759795.1 identified by match to protein family HMM PF01594 YP_759796.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_759798.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_759799.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171 YP_759800.1 identified by match to protein family HMM PF02515 YP_759801.1 identified by similarity to GB:AAB50182.1; match to protein family HMM PF00682 YP_759802.1 identified by similarity to GB:AAL58394.1; match to protein family HMM PF00474 YP_759803.1 identified by similarity to PIR:S75692 YP_759804.1 identified by similarity to PIR:AE2432 YP_759805.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_759806.1 identified by match to protein family HMM PF07690 YP_759807.1 identified by match to protein family HMM PF00561 YP_759808.1 identified by similarity to SP:P76113; match to protein family HMM PF00107 YP_759810.1 identified by similarity to GB:BAC53275.1; match to protein family HMM PF07045 YP_759813.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390 YP_759815.1 identified by match to protein family HMM PF00106 YP_759816.1 identified by match to protein family HMM PF01522 YP_759818.1 identified by match to protein family HMM PF03328 YP_759819.1 identified by match to protein family HMM PF01575 YP_759820.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_759821.1 identified by match to protein family HMM PF02515 YP_759822.1 identified by similarity to PIR:AE2432 YP_759823.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_759824.1 identified by match to protein family HMM PF03972 YP_759825.1 identified by match to protein family HMM PF03972 YP_759827.1 identified by match to protein family HMM PF01425 YP_759828.1 identified by match to protein family HMM PF00378 YP_759829.1 identified by match to protein family HMM PF00171 YP_759830.1 identified by match to protein family HMM PF01565 YP_759832.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_759833.1 identified by similarity to GB:CAB59714.1 YP_759834.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR01409 YP_759835.1 identified by match to protein family HMM PF01522 YP_759836.1 identified by match to protein family HMM PF01522 YP_759837.1 identified by match to protein family HMM PF00857 YP_759838.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_759839.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_759840.1 identified by similarity to GB:CAH34042.1 YP_759841.1 identified by match to protein family HMM PF00487 YP_759842.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_759844.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_759845.1 identified by similarity to SP:P17731; match to protein family HMM PF00155; match to protein family HMM TIGR01141 YP_759846.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_759848.1 identified by similarity to GB:AAK24136.1 YP_759849.1 identified by similarity to PIR:A44832; match to protein family HMM PF00144 YP_759850.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_759851.1 identified by similarity to GB:AAK23568.1 YP_759852.1 identified by similarity to PIR:AG2064 YP_759853.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_759854.1 identified by similarity to SP:P54303; match to protein family HMM PF00196 YP_759855.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875 YP_759856.1 identified by match to protein family HMM PF02016 YP_759857.1 identified by similarity to SP:P07002; match to protein family HMM PF02233 YP_759858.1 identified by similarity to SP:Q59764 YP_759859.1 identified by similarity to SP:Q60164; match to protein family HMM PF01262; match to protein family HMM PF05222 YP_759860.1 identified by match to protein family HMM PF00106 YP_759861.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_759863.1 identified by similarity to GB:AAD37494.1; match to protein family HMM PF01032 YP_759864.1 identified by similarity to SP:P15031; match to protein family HMM PF00005 YP_759866.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_759867.1 identified by match to protein family HMM PF00291 YP_759868.1 identified by match to protein family HMM PF06981 YP_759869.1 identified by match to protein family HMM PF00263; match to protein family HMM PF04972 YP_759870.1 identified by similarity to GB:CAE27943.1 YP_759871.1 identified by similarity to GB:AAF40194.1 YP_759872.1 identified by similarity to GB:AAF40195.1; match to protein family HMM PF00437 YP_759873.1 identified by match to protein family HMM PF00482 YP_759874.1 identified by similarity to GB:AAN75213.1; match to protein family HMM PF00482 YP_759875.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_759876.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379 YP_759877.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_759878.1 identified by match to protein family HMM PF04355 YP_759879.1 identified by similarity to GB:CAC45799.1 YP_759880.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_759881.1 identified by match to protein family HMM TIGR00747 YP_759882.1 identified by similarity to SP:P30787; match to protein family HMM PF00216 YP_759884.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_759885.1 identified by similarity to SP:P24555; match to protein family HMM PF00326; match to protein family HMM PF02897 YP_759887.1 identified by match to protein family HMM PF01575 YP_759888.1 identified by similarity to GB:AAK22399.1 YP_759889.1 identified by match to protein family HMM PF00266 YP_759891.1 identified by match to protein family HMM PF01152 YP_759892.1 identified by match to protein family HMM PF00583 YP_759894.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_759895.1 Converts isocitrate to alpha ketoglutarate YP_759896.1 identified by match to protein family HMM PF00588 YP_759900.1 identified by match to protein family HMM PF00378 YP_759901.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_759902.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_759904.1 identified by similarity to GB:BAC49397.1 YP_759905.1 identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_759906.1 identified by match to protein family HMM PF01943 YP_759907.1 identified by similarity to SP:P39847; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551 YP_759908.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801 YP_759909.1 identified by similarity to GB:AAN81510.1 YP_759910.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration YP_759911.1 identified by similarity to GB:AAK22150.1 YP_759912.1 identified by match to protein family HMM PF02706 YP_759913.1 identified by similarity to SP:P33694 YP_759914.1 identified by match to protein family HMM PF04932 YP_759915.1 identified by match to protein family HMM PF00657 YP_759916.1 identified by similarity to SP:P26502; match to protein family HMM PF01757 YP_759918.1 identified by similarity to SP:P26503; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_759919.1 identified by match to protein family HMM PF00535 YP_759920.1 identified by match to protein family HMM PF06271 YP_759922.1 identified by similarity to GB:AAK22553.1; match to protein family HMM PF01882 YP_759923.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_759924.1 identified by similarity to GB:AAK22551.1 YP_759926.1 identified by similarity to GB:AAK23612.1 YP_759927.1 identified by match to protein family HMM PF00248 YP_759928.1 identified by similarity to GB:AAT34025.1 YP_759929.1 identified by match to protein family HMM PF00135 YP_759930.1 catalyzes the formation of cysteine and 2-oxobutanoate from cystathionine YP_759932.1 identified by match to protein family HMM PF00561 YP_759933.1 identified by similarity to GB:AAK25421.1 YP_759934.1 identified by match to protein family HMM PF00293 YP_759935.1 identified by similarity to GB:BAA11872.1; match to protein family HMM PF00326; match to protein family HMM PF00930 YP_759937.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_759938.1 identified by match to protein family HMM PF01425 YP_759941.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_759943.1 identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847 YP_759944.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_759946.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745 YP_759947.1 identified by similarity to GB:AAC72074.1; match to protein family HMM PF00034; match to protein family HMM TIGR00782 YP_759948.1 identified by similarity to GB:AAK23384.1; match to protein family HMM PF05545 YP_759949.1 identified by similarity to GB:AAC46109.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781 YP_759950.1 identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780 YP_759952.1 identified by similarity to SP:P26489; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_759953.1 identified by similarity to SP:P10958; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_759954.1 identified by match to protein family HMM PF00072 YP_759955.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_759956.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_759957.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_759959.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_759960.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_759964.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00486 YP_759965.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_759966.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212 YP_759967.1 identified by similarity to SP:P53558; match to protein family HMM TIGR00347 YP_759968.1 identified by match to protein family HMM PF00440 YP_759969.1 identified by match to protein family HMM PF01546 YP_759970.1 identified by match to protein family HMM PF00296 YP_759971.1 identified by match to protein family HMM PF07690 YP_759972.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_759973.1 identified by match to protein family HMM PF01613 YP_759975.1 identified by match to protein family HMM PF00857 YP_759976.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_759977.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_759978.1 identified by match to protein family HMM PF00245 YP_759979.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_759981.1 identified by match to protein family HMM PF02518 YP_759982.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_759986.1 identified by similarity to GB:AAN68937.1 YP_759987.1 identified by match to protein family HMM PF00743 YP_759988.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_759989.1 identified by match to protein family HMM PF00959 YP_759990.1 identified by similarity to SP:Q9FS87; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_759991.1 identified by similarity to GB:AAM43210.1 YP_759992.1 identified by similarity to GB:AAS03378.1 YP_759993.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_759994.1 identified by match to protein family HMM PF00027; match to protein family HMM PF01734 YP_759995.1 identified by match to protein family HMM PF01039 YP_759996.1 identified by similarity to SP:P80238 YP_759999.1 identified by match to protein family HMM PF01757 YP_760000.1 identified by match to protein family HMM PF00378 YP_760001.1 identified by similarity to GB:CAG75918.1 YP_760002.1 identified by match to protein family HMM PF05675 YP_760003.1 identified by similarity to SP:Q42523; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_760004.1 identified by similarity to GB:AAL14233.1; match to protein family HMM PF00743 YP_760005.1 identified by similarity to GB:CAF29646.1 YP_760006.1 identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409 YP_760007.1 identified by match to protein family HMM PF03724 YP_760008.1 identified by match to protein family HMM PF00027 YP_760010.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_760012.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_760013.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_760018.1 identified by match to protein family HMM PF01656 YP_760020.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556 YP_760021.1 identified by similarity to GB:BAC90684.1 YP_760023.1 identified by similarity to GB:AAK24731.1 YP_760024.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_760025.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518 YP_760026.1 identified by match to protein family HMM PF07719 YP_760027.1 identified by match to protein family HMM PF03100 YP_760028.1 identified by similarity to SP:P33927; match to protein family HMM PF01578 YP_760029.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_760030.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_760031.1 identified by similarity to GB:AAC43718.1; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_760032.1 identified by similarity to SP:P45405; match to protein family HMM PF03918 YP_760033.1 identified by similarity to GB:CAC46696.1 YP_760034.1 identified by match to protein family HMM PF03710 YP_760036.1 identified by similarity to SP:Q45585; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_760037.1 identified by similarity to GB:AAK24714.1 YP_760039.1 identified by similarity to GB:BAC91546.1; match to protein family HMM PF04828 YP_760040.1 identified by similarity to SP:P13397; match to protein family HMM PF01425 YP_760041.1 identified by similarity to GB:BAA32063.1; match to protein family HMM PF02386 YP_760042.1 identified by similarity to GB:AAK25445.1; match to protein family HMM PF06262 YP_760043.1 identified by similarity to GB:AAS81236.1; match to protein family HMM PF01906 YP_760044.1 MDM; functions in conversion of succinate to propionate YP_760045.1 identified by similarity to SP:Q05064; match to protein family HMM PF01642 YP_760047.1 identified by match to protein family HMM PF03060 YP_760048.1 identified by similarity to GB:AAP48785.1 YP_760050.1 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_760051.1 identified by similarity to GB:AAV82898.1 YP_760052.1 identified by match to protein family HMM PF01425 YP_760053.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_760054.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02230 YP_760055.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760056.1 identified by match to protein family HMM PF00324 YP_760060.1 identified by match to protein family HMM PF00067 YP_760061.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_760062.1 identified by similarity to GB:AAK24320.1 YP_760063.1 identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069 YP_760064.1 identified by similarity to SP:Q8YF58; match to protein family HMM PF06793 YP_760065.1 identified by similarity to GB:CAD17123.1; match to protein family HMM PF01370 YP_760066.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_760067.1 identified by match to protein family HMM PF00487 YP_760069.1 identified by match to protein family HMM PF04397 YP_760070.1 identified by match to protein family HMM PF01757 YP_760071.1 identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008 YP_760072.1 identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_760075.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_760077.1 identified by similarity to GB:AAK22293.1 YP_760080.1 identified by similarity to GB:AAK22297.1 YP_760081.1 identified by similarity to SP:P24231; match to protein family HMM PF01523 YP_760082.1 identified by match to protein family HMM PF00459 YP_760083.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_760084.1 identified by similarity to GB:AAC18100.1; match to protein family HMM PF01323 YP_760085.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01474 YP_760086.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_760087.1 identified by match to protein family HMM PF07690 YP_760088.1 identified by match to protein family HMM PF00248 YP_760089.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_760090.1 identified by match to protein family HMM PF01872 YP_760091.1 identified by match to protein family HMM PF04107; match to protein family HMM TIGR01436 YP_760092.1 identified by similarity to GB:BAC90439.1; match to protein family HMM PF02586 YP_760093.1 identified by similarity to SP:P36574; match to protein family HMM PF00854; match to protein family HMM TIGR00924 YP_760094.1 identified by match to protein family HMM PF00924 YP_760095.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_760096.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_760097.1 identified by similarity to SP:P13111; match to protein family HMM PF00376 YP_760099.1 identified by match to protein family HMM PF00296 YP_760100.1 identified by similarity to GB:AAK22478.1; match to protein family HMM PF02636 YP_760101.1 identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544 YP_760103.1 identified by similarity to GB:AAK22480.1 YP_760104.1 identified by match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_760106.1 identified by similarity to GB:BAD57439.1 YP_760107.1 identified by similarity to PIR:E97651; match to protein family HMM PF06627 YP_760109.1 identified by similarity to GB:AAF35849.1; match to protein family HMM PF01706 YP_760111.1 identified by similarity to GB:AAA23038.1; match to protein family HMM PF01052; match to protein family HMM TIGR02480 YP_760112.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_760113.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_760114.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_760115.1 identified by match to protein family HMM PF00144 YP_760116.1 identified by match to protein family HMM PF04909 YP_760118.1 identified by match to protein family HMM PF00474 YP_760119.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188 YP_760120.1 identified by match to protein family HMM PF00535 YP_760121.1 identified by similarity to SP:Q07737; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_760122.1 identified by match to protein family HMM PF00160 YP_760125.1 identified by similarity to SP:P50350; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_760126.1 identified by match to protein family HMM PF00291 YP_760127.1 identified by similarity to GB:CAG23089.1; match to protein family HMM TIGR01352 YP_760128.1 identified by similarity to SP:P05791; match to protein family HMM PF00920; match to protein family HMM TIGR00110 YP_760129.1 identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 YP_760132.1 identified by similarity to SP:P76113; match to protein family HMM PF00107 YP_760135.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01324 YP_760136.1 identified by match to protein family HMM PF00581 YP_760137.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_760139.1 identified by match to protein family HMM PF04244 YP_760140.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_760141.1 identified by match to protein family HMM PF05170 YP_760143.1 identified by similarity to GB:CAH14296.1 YP_760144.1 identified by match to protein family HMM PF01381 YP_760146.1 identified by match to protein family HMM PF00589 YP_760148.1 identified by match to protein family HMM PF00691 YP_760151.1 identified by similarity to SP:P50197; match to protein family HMM PF00106 YP_760152.1 identified by similarity to GB:BAA24454.1; match to protein family HMM PF00743 YP_760156.1 identified by similarity to PIR:AD3172; match to protein family HMM PF05284 YP_760159.1 identified by similarity to GB:AAK22927.1 YP_760160.1 identified by similarity to GB:BAB52523.1 YP_760161.1 identified by match to protein family HMM PF02534 YP_760162.1 identified by match to protein family HMM PF00565 YP_760163.1 identified by similarity to GB:AAV96142.1 YP_760164.1 identified by match to protein family HMM PF00196 YP_760166.1 identified by match to protein family HMM PF00890 YP_760167.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_760168.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_760171.1 identified by match to protein family HMM PF03372 YP_760174.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_760175.1 identified by similarity to GB:BAC45755.1; match to protein family HMM PF07045 YP_760177.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_760178.1 identified by match to protein family HMM PF07883 YP_760179.1 identified by match to protein family HMM PF00440 YP_760180.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760181.1 identified by match to protein family HMM PF00144 YP_760182.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_760183.1 identified by match to protein family HMM PF00027 YP_760184.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760185.1 identified by similarity to OMNI:PIN0532 YP_760186.1 identified by similarity to GB:CAE31223.1 YP_760187.1 identified by match to protein family HMM PF00596 YP_760188.1 identified by match to protein family HMM PF07690 YP_760189.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_760190.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171 YP_760191.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_760193.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_760195.1 identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713 YP_760196.1 identified by similarity to GB:CAI09940.1 YP_760197.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_760198.1 identified by match to protein family HMM PF05275 YP_760199.1 identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480 YP_760200.1 identified by similarity to SP:P77214 YP_760201.1 identified by similarity to GB:CAE27102.1; match to protein family HMM PF02583 YP_760203.1 identified by similarity to GB:AAK22927.1 YP_760204.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_760205.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_760206.1 identified by match to protein family HMM PF00753 YP_760207.1 identified by similarity to SP:P39849; match to protein family HMM PF00107 YP_760208.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_760209.1 identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937 YP_760210.1 identified by match to protein family HMM PF00069 YP_760211.1 identified by similarity to GB:AAT29983.1 YP_760217.1 identified by match to protein family HMM TIGR01409 YP_760218.1 identified by match to protein family HMM PF00440 YP_760220.1 identified by similarity to GB:AAL71852.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_760221.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_760223.1 identified by match to protein family HMM PF02277 YP_760224.1 identified by match to protein family HMM PF02654; match to protein family HMM TIGR00317 YP_760225.1 identified by match to protein family HMM PF00300 YP_760226.1 identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708 YP_760227.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760228.1 Part of the evidence for the annotation of this gene is based on presence of the gene in a cluster of genes with related functions. YP_760229.1 identified by match to protein family HMM PF01032 YP_760230.1 identified by similarity to SP:P07821; match to protein family HMM PF00005 YP_760231.1 identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380 YP_760232.1 identified by similarity to SP:P21633; match to protein family HMM PF00155 YP_760233.1 identified by match to protein family HMM PF02283 YP_760234.1 identified by similarity to SP:P05050; match to protein family HMM PF03171 YP_760236.1 identified by similarity to PIR:AF2169 YP_760237.1 adjacent to truncated response regulator gene; identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_760238.1 identified by similarity to GB:AAS80487.1; match to protein family HMM PF05982 YP_760239.1 identified by similarity to GB:AAR33835.1 YP_760240.1 identified by similarity to GB:BAD70720.1 YP_760242.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_760243.1 identified by match to protein family HMM PF02661 YP_760244.1 identified by match to protein family HMM PF00529 YP_760245.1 identified by match to protein family HMM PF00005 YP_760246.1 identified by match to protein family HMM PF01061 YP_760247.1 identified by match to protein family HMM PF01061 YP_760248.1 identified by match to protein family HMM PF00440 YP_760249.1 identified by similarity to GB:CAI09590.1 YP_760250.1 identified by match to protein family HMM PF01814 YP_760251.1 identified by match to protein family HMM PF01152 YP_760252.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_760253.1 identified by similarity to GB:AAV97308.1 YP_760257.1 identified by match to protein family HMM PF01925 YP_760258.1 identified by match to protein family HMM PF07298 YP_760259.1 identified by match to protein family HMM PF02597 YP_760261.1 identified by similarity to SP:P30749; match to protein family HMM PF02391 YP_760262.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667 YP_760263.1 identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_760264.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_760265.1 identified by match to protein family HMM PF07858 YP_760266.1 identified by similarity to GB:CAA73377.1; match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR02504 YP_760267.1 identified by match to protein family HMM PF05940 YP_760268.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_760269.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_760270.1 identified by similarity to SP:P10903; match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_760271.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_760272.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_760273.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_760274.1 identified by similarity to GB:AAK22594.1 YP_760275.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_760276.1 identified by match to protein family HMM PF00639 YP_760277.1 identified by similarity to GB:AAQ58241.1 YP_760278.1 identified by match to protein family HMM PF00484 YP_760279.1 identified by similarity to GB:BAC70664.1 YP_760280.1 identified by match to protein family HMM PF00440 YP_760281.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_760283.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_760284.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_760285.1 identified by similarity to SP:P31677; match to protein family HMM PF00982 YP_760286.1 identified by similarity to SP:P31678; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484 YP_760287.1 identified by match to protein family HMM PF00723 YP_760288.1 identified by similarity to GB:AAK23151.1 YP_760289.1 identified by match to protein family HMM PF00483 YP_760290.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_760292.1 identified by similarity to GB:AAK23141.1 YP_760293.1 identified by similarity to GB:AAV88731.1 YP_760294.1 identified by similarity to GB:AAK23138.1 YP_760295.1 identified by similarity to GB:AAM72564.1 YP_760296.1 identified by match to protein family HMM PF03739 YP_760297.1 identified by match to protein family HMM PF03739 YP_760298.1 identified by similarity to GB:CAD84715.1 YP_760299.1 identified by similarity to GB:CAD84716.1 YP_760300.1 identified by similarity to GB:BAB56013.1; match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM PF00464; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_760301.1 identified by similarity to SP:P20804 YP_760302.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_760303.1 identified by match to protein family HMM PF00501 YP_760304.1 identified by match to protein family HMM PF01943 YP_760305.1 identified by match to protein family HMM PF00589 YP_760306.1 identified by match to protein family HMM PF01381 YP_760310.1 identified by similarity to SP:P13398; match to protein family HMM PF01425 YP_760311.1 identified by similarity to GB:CAC37457.1 YP_760312.1 identified by similarity to GB:AAA23300.1; match to protein family HMM PF03435 YP_760313.1 identified by match to protein family HMM PF00583 YP_760314.1 identified by match to protein family HMM PF00440 YP_760315.1 identified by similarity to GB:AAS20349.1 YP_760316.1 identified by match to protein family HMM PF00144 YP_760317.1 identified by match to protein family HMM PF05684 YP_760318.1 identified by match to protein family HMM PF02746 YP_760319.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760321.1 identified by match to protein family HMM PF01037 YP_760323.1 identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812 YP_760324.1 identified by match to protein family HMM PF01925 YP_760325.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760326.1 identified by similarity to PIR:S70540; match to protein family HMM PF03861 YP_760328.1 identified by similarity to PIR:F82984 YP_760329.1 identified by match to protein family HMM PF00478; match to protein family HMM PF03060 YP_760330.1 identified by match to protein family HMM PF02534 YP_760331.1 identified by similarity to GB:CAD84149.1 YP_760332.1 identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_760333.1 identified by match to protein family HMM PF03171 YP_760335.1 identified by match to protein family HMM PF01022 YP_760336.1 identified by similarity to GB:AAK24341.1; match to protein family HMM PF01169 YP_760338.1 identified by similarity to GB:AAK22457.1 YP_760339.1 identified by match to protein family HMM PF00069 YP_760340.1 identified by match to protein family HMM PF04542; match to protein family HMM PF07638; match to protein family HMM TIGR02937 YP_760344.1 identified by match to protein family HMM PF00069 YP_760345.1 identified by match to protein family HMM PF00112 YP_760346.1 identified by match to protein family HMM PF01047 YP_760347.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02406 YP_760348.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_760349.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid YP_760350.1 identified by similarity to GB:AAS02097.1; match to protein family HMM PF05721; match to protein family HMM TIGR02408 YP_760351.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP YP_760352.1 identified by match to protein family HMM PF07690 YP_760353.1 identified by match to protein family HMM PF00474 YP_760354.1 identified by similarity to SP:P75830; match to protein family HMM PF00364; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_760355.1 identified by similarity to SP:P75831; match to protein family HMM PF00005; match to protein family HMM PF02687 YP_760356.1 identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_760357.1 identified by match to protein family HMM PF03929 YP_760358.1 identified by similarity to GB:AAM37790.1 YP_760359.1 identified by similarity to GB:AAM37791.1 YP_760360.1 identified by match to protein family HMM PF02424 YP_760361.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760362.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent YP_760363.1 identified by similarity to SP:P06957; match to protein family HMM PF07729 YP_760365.1 identified by match to protein family HMM TIGR02106 YP_760366.1 identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_760367.1 identified by similarity to SP:P11026; match to protein family HMM PF01654 YP_760368.1 identified by similarity to SP:P29018; match to protein family HMM PF00005; match to protein family HMM TIGR02857 YP_760369.1 identified by similarity to SP:P23886; match to protein family HMM PF00005 YP_760371.1 identified by similarity to SP:Q51948; match to protein family HMM PF01323 YP_760372.1 identified by similarity to GB:CAE26026.1 YP_760373.1 identified by similarity to GB:AAK23161.1 YP_760374.1 identified by similarity to GB:AAN68957.1; match to protein family HMM PF03781 YP_760375.1 identified by match to protein family HMM PF00884 YP_760376.1 identified by match to protein family HMM PF00884 YP_760377.1 identified by similarity to GB:AAK25606.1 YP_760378.1 identified by similarity to SP:Q9HHC4; match to protein family HMM PF01068; match to protein family HMM PF04679 YP_760379.1 identified by match to protein family HMM PF00753 YP_760381.1 identified by similarity to GB:AAO77005.1 YP_760382.1 identified by match to protein family HMM PF00583 YP_760383.1 identified by match to protein family HMM PF01112 YP_760384.1 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00422 YP_760385.1 identified by similarity to GB:AAK23300.1 YP_760386.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844 YP_760387.1 identified by match to protein family HMM PF01135 YP_760389.1 identified by match to protein family HMM PF00583 YP_760390.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_760391.1 identified by similarity to GB:BAB50753.1 YP_760392.1 identified by match to protein family HMM PF01638 YP_760393.1 identified by similarity to GB:AAN82617.1 YP_760394.1 identified by similarity to SP:P13111; match to protein family HMM PF00376 YP_760395.1 identified by similarity to SP:P13112 YP_760396.1 identified by match to protein family HMM PF00403 YP_760397.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR02053 YP_760398.1 identified by similarity to GB:AAO07774.1 YP_760399.1 identified by similarity to SP:P38054; match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_760400.1 identified by match to protein family HMM TIGR01730 YP_760401.1 identified by match to protein family HMM PF02321 YP_760402.1 identified by similarity to GB:CAB89594.2 YP_760404.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_760406.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_760408.1 identified by match to protein family HMM PF00165 YP_760409.1 identified by similarity to GB:AAV82071.1 YP_760410.1 identified by match to protein family HMM PF05425 YP_760411.1 identified by similarity to SP:Q56797; match to protein family HMM PF04234 YP_760412.1 identified by match to protein family HMM PF05275 YP_760413.1 identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480 YP_760414.1 identified by similarity to SP:P77214 YP_760415.1 identified by similarity to GB:BAC45966.1; match to protein family HMM PF02583 YP_760416.1 identified by similarity to GB:CAE80563.1 YP_760419.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_760420.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_760421.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_760422.1 identified by match to protein family HMM PF02321 YP_760424.1 identified by match to protein family HMM PF05930 YP_760425.1 identified by similarity to PIR:AD3172; match to protein family HMM PF05284 YP_760426.1 identified by similarity to PIR:A46449; match to protein family HMM PF03743 YP_760427.1 identified by similarity to PIR:H44020; match to protein family HMM PF03524; match to protein family HMM TIGR02775 YP_760428.1 identified by similarity to SP:P49814 YP_760429.1 identified by similarity to GB:BAD01773.1 YP_760431.1 identified by match to protein family HMM PF00271 YP_760432.1 identified by similarity to SP:P13111; match to protein family HMM PF00376 YP_760433.1 identified by match to protein family HMM PF01545 YP_760434.1 identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077 YP_760435.1 identified by match to protein family HMM PF00589 YP_760436.1 identified by similarity to SP:Q89UZ9; match to protein family HMM PF03884 YP_760438.1 identified by match to protein family HMM PF00342 YP_760439.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_760440.1 identified by similarity to GB:BAC49198.1; match to protein family HMM PF02627 YP_760441.1 identified by match to protein family HMM PF00128 YP_760442.1 identified by similarity to SP:P22992; match to protein family HMM PF00479; match to protein family HMM PF02781; match to protein family HMM TIGR00871 YP_760443.1 identified by match to protein family HMM TIGR01198 YP_760444.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_760445.1 identified by similarity to SP:P46880; match to protein family HMM PF02685 YP_760446.1 identified by similarity to SP:O84969; match to protein family HMM PF00507 YP_760447.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_760448.1 Catalyzes the transfer of electrons from NADH to quinone YP_760449.1 Catalyzes the transfer of electrons from NADH to quinone YP_760450.1 identified by similarity to GB:AAK23926.1 YP_760451.1 identified by match to protein family HMM PF00903 YP_760452.1 identified by match to protein family HMM PF01257; match to protein family HMM TIGR01958 YP_760453.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_760455.1 Catalyzes the transfer of electrons from NADH to quinone YP_760456.1 Catalyzes the transfer of electrons from NADH to quinone YP_760457.1 Catalyzes the transfer of electrons from NADH to quinone YP_760458.1 identified by similarity to SP:P50975; match to protein family HMM PF00499 YP_760459.1 identified by similarity to SP:P50940; match to protein family HMM PF00420 YP_760460.1 identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974 YP_760461.1 identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_760462.1 identified by similarity to SP:P50973; match to protein family HMM PF00361; match to protein family HMM TIGR01770 YP_760463.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_760464.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_760465.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_760466.1 identified by similarity to SP:Q96PE7; match to protein family HMM PF00903 YP_760467.1 identified by similarity to GB:CAE28374.1 YP_760468.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_760469.1 identified by match to protein family HMM PF02687 YP_760470.1 identified by match to protein family HMM PF00005 YP_760471.1 identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594 YP_760472.1 identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011 YP_760473.1 identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116 YP_760474.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075 YP_760475.1 identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496 YP_760476.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_760477.1 identified by match to protein family HMM PF01148 YP_760478.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_760479.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163 YP_760480.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_760481.1 identified by match to protein family HMM PF03938 YP_760482.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01853 YP_760483.1 identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852 YP_760484.1 identified by match to protein family HMM PF06230 YP_760485.1 identified by similarity to GB:CAA60866.1; match to protein family HMM PF02684; match to protein family HMM TIGR00215 YP_760486.1 identified by similarity to SP:P51037; match to protein family HMM PF00285; match to protein family HMM TIGR01798 YP_760487.1 identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464 YP_760490.1 Represses a number of genes involved in the response to DNA damage YP_760491.1 identified by similarity to SP:P20577; match to protein family HMM PF00218 YP_760492.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245 YP_760493.1 identified by similarity to GB:BAC65123.1; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_760494.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564 YP_760495.1 identified by similarity to SP:P77241 YP_760496.1 identified by similarity to SP:P27876; match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_760497.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_760498.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_760499.1 identified by match to protein family HMM PF02353 YP_760500.1 identified by match to protein family HMM PF07103 YP_760501.1 identified by similarity to GB:BAB53726.1; match to protein family HMM PF01266 YP_760502.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_760503.1 identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199 YP_760504.1 identified by match to protein family HMM TIGR02097 YP_760505.1 identified by match to protein family HMM PF02541 YP_760506.1 identified by match to protein family HMM PF01728 YP_760507.1 identified by similarity to GB:BAC45879.1; match to protein family HMM PF04828 YP_760508.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302 YP_760509.1 identified by match to protein family HMM PF00583 YP_760510.1 identified by match to protein family HMM PF01189 YP_760511.1 identified by match to protein family HMM PF05118 YP_760512.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_760513.1 identified by match to protein family HMM PF01613 YP_760514.1 identified by match to protein family HMM PF00753 YP_760515.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_760516.1 identified by similarity to GB:AAF06832.1 YP_760517.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_760518.1 identified by similarity to SP:P38422; match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_760519.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_760520.1 identified by match to protein family HMM PF00300 YP_760521.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR02814 YP_760522.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF07977 YP_760523.1 identified by match to protein family HMM PF00691 YP_760524.1 identified by similarity to GB:AAK23082.1 YP_760525.1 identified by similarity to GB:AAL18808.1; match to protein family HMM PF02515 YP_760526.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_760527.1 identified by similarity to GB:AAV93896.1 YP_760528.1 identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692 YP_760529.1 identified by similarity to SP:P14604; match to protein family HMM PF00378 YP_760530.1 identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_760531.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_760532.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_760533.1 identified by similarity to PIR:G97490; match to protein family HMM PF04828 YP_760534.1 identified by similarity to GB:BAC91814.1; match to protein family HMM PF06080 YP_760535.1 identified by match to protein family HMM PF00248 YP_760536.1 identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501 YP_760539.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_760540.1 identified by similarity to SP:P22939; match to protein family HMM PF00348 YP_760541.1 identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 YP_760542.1 identified by match to protein family HMM PF00300 YP_760543.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_760544.1 identified by match to protein family HMM PF00753 YP_760545.1 identified by similarity to SP:P32684; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_760546.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_760547.1 identified by match to protein family HMM PF04264 YP_760548.1 identified by match to protein family HMM PF01292; match to protein family HMM PF04264 YP_760549.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_760550.1 identified by similarity to GB:CAC46063.1 YP_760551.1 identified by similarity to SP:P05796; match to protein family HMM PF00132; match to protein family HMM PF06426; match to protein family HMM TIGR01172 YP_760552.1 identified by match to protein family HMM PF00873 YP_760553.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_760554.1 identified by match to protein family HMM PF00440 YP_760555.1 identified by match to protein family HMM PF00881 YP_760556.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_760557.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_760558.1 identified by match to protein family HMM PF01103 YP_760559.1 identified by similarity to GB:AAK23583.1; match to protein family HMM PF04357 YP_760560.1 identified by match to protein family HMM PF01381 YP_760561.1 identified by match to protein family HMM PF00188 YP_760562.1 identified by match to protein family HMM PF03171 YP_760563.1 identified by similarity to GB:AAM35581.1 YP_760564.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760566.1 identified by similarity to GB:AAD05173.1; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_760567.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 YP_760568.1 identified by similarity to GB:AAD05175.1; match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_760569.1 identified by similarity to GB:AAD05177.1; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_760570.1 identified by similarity to GB:AAD05178.1; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532 YP_760571.1 identified by similarity to SP:Q00516; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532 YP_760572.1 identified by similarity to SP:Q00517; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532 YP_760573.1 identified by similarity to SP:P31706; match to protein family HMM PF03934 YP_760574.1 identified by similarity to SP:P45789; match to protein family HMM PF05134; match to protein family HMM TIGR01709 YP_760575.1 identified by similarity to GB:AAD05183.1 YP_760576.1 identified by match to protein family HMM PF01203 YP_760577.1 identified by similarity to SP:P11910 YP_760578.1 identified by match to protein family HMM PF01381 YP_760579.1 identified by similarity to SP:P16095; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_760580.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820 YP_760581.1 identified by similarity to GB:AAK22176.1 YP_760582.1 identified by match to protein family HMM PF00005 YP_760583.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_760584.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02784 YP_760586.1 identified by match to protein family HMM PF00483 YP_760587.1 identified by similarity to GB:AAK25497.1; match to protein family HMM PF01636 YP_760588.1 identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_760589.1 identified by similarity to GB:CAC37905.1; match to protein family HMM PF00070; match to protein family HMM PF01262; match to protein family HMM PF07992 YP_760590.1 identified by similarity to SP:P37098; match to protein family HMM PF00111 YP_760592.1 identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216 YP_760593.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_760594.1 identified by similarity to SP:P05436; match to protein family HMM PF00231; match to protein family HMM TIGR01146 YP_760595.1 identified by similarity to SP:P05439; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962 YP_760596.1 identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145 YP_760597.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_760598.1 identified by match to protein family HMM PF00440 YP_760599.1 identified by match to protein family HMM PF03061 YP_760600.1 identified by match to protein family HMM PF07728 YP_760601.1 identified by match to protein family HMM PF05762 YP_760602.1 identified by similarity to SP:Q45971; match to protein family HMM PF01555 YP_760603.1 identified by match to protein family HMM PF02690 YP_760604.1 identified by match to protein family HMM PF04055 YP_760605.1 identified by similarity to GB:CAE11027.1 YP_760607.1 identified by match to protein family HMM PF00535 YP_760608.1 identified by similarity to GB:AAO56273.1; match to protein family HMM PF01814 YP_760609.1 identified by similarity to GB:CAD29336.1; match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_760610.1 identified by similarity to SP:Q16134; match to protein family HMM PF01266; match to protein family HMM PF05187 YP_760611.1 identified by similarity to GB:AAQ61721.1; match to protein family HMM PF07721 YP_760612.1 identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_760613.1 identified by similarity to SP:P07012; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_760614.1 identified by match to protein family HMM PF00313; match to protein family HMM PF06961 YP_760615.1 identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_760617.1 identified by match to protein family HMM PF01323 YP_760618.1 identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_760619.1 identified by similarity to SP:P15011 YP_760620.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_760621.1 identified by match to protein family HMM PF00137 YP_760622.1 identified by match to protein family HMM PF00430 YP_760623.1 identified by match to protein family HMM PF00430 YP_760625.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_760626.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966 YP_760627.1 identified by match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 YP_760628.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_760629.1 identified by similarity to SP:P24206; match to protein family HMM PF01135 YP_760630.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_760631.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 YP_760633.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_760634.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_760635.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_760636.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_760637.1 identified by match to protein family HMM PF04342 YP_760638.1 identified by match to protein family HMM PF07685; match to protein family HMM TIGR01737 YP_760639.1 identified by match to protein family HMM PF00962; match to protein family HMM TIGR01430 YP_760641.1 identified by match to protein family HMM PF01266 YP_760642.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_760643.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR01736 YP_760644.1 identified by match to protein family HMM PF01389 YP_760646.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389 YP_760647.1 identified by match to protein family HMM PF01722 YP_760648.1 identified by match to protein family HMM PF01401 YP_760649.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_760650.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365 YP_760651.1 identified by similarity to GB:AAB81575.1 YP_760652.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_760653.1 identified by similarity to GB:BAC41251.1; match to protein family HMM PF01965 YP_760654.1 identified by similarity to GB:AAN18035.1; match to protein family HMM PF00165; match to protein family HMM PF01965 YP_760655.1 identified by similarity to GB:AAO78504.1 YP_760656.1 identified by similarity to GB:CAD13666.1; match to protein family HMM PF03976 YP_760657.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_760658.1 identified by similarity to SP:P50198; match to protein family HMM PF00106 YP_760659.1 identified by match to protein family HMM PF07883 YP_760660.1 identified by match to protein family HMM PF02515 YP_760661.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_760662.1 identified by match to protein family HMM PF00166 YP_760663.1 identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348 YP_760664.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_760665.1 identified by match to protein family HMM PF03061 YP_760666.1 identified by similarity to GB:BAC49676.1; match to protein family HMM PF02643 YP_760667.1 identified by match to protein family HMM PF00313 YP_760668.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_760669.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928 YP_760670.1 identified by match to protein family HMM PF01244 YP_760671.1 identified by match to protein family HMM PF03553 YP_760672.1 identified by match to protein family HMM PF00106 YP_760673.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760674.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_760675.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349 YP_760676.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_760677.1 identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676 YP_760678.1 identified by match to protein family HMM PF04977 YP_760679.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_760680.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_760681.1 identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 YP_760682.1 identified by match to protein family HMM PF00300 YP_760683.1 identified by match to protein family HMM PF02515 YP_760685.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_760686.1 identified by match to protein family HMM PF03937 YP_760687.1 identified by similarity to SP:P24230; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336 YP_760688.1 identified by similarity to PIR:AI2795; match to protein family HMM PF04367 YP_760689.1 identified by match to protein family HMM PF01636 YP_760692.1 identified by similarity to SP:O43708; match to protein family HMM PF02798; match to protein family HMM TIGR01262 YP_760693.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_760694.1 identified by match to protein family HMM PF05175 YP_760695.1 identified by similarity to SP:P76217; match to protein family HMM PF00171 YP_760696.1 identified by match to protein family HMM PF04958 YP_760697.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_760698.1 identified by match to protein family HMM PF00691 YP_760699.1 identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 YP_760700.1 identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964 YP_760701.1 identified by match to protein family HMM PF03758 YP_760702.1 identified by similarity to SP:P31459 YP_760703.1 identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_760704.1 identified by match to protein family HMM PF01926 YP_760705.1 Stimulates the elongation of poly(A) tails YP_760706.1 identified by similarity to SP:P21166 YP_760707.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_760708.1 identified by similarity to SP:Q06065; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_760709.1 identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_760710.1 identified by similarity to SP:P06713; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_760711.1 identified by similarity to SP:P45670; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_760712.1 identified by similarity to SP:Q08111; match to protein family HMM PF01207 YP_760713.1 identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453 YP_760715.1 identified by match to protein family HMM PF00378 YP_760716.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_760717.1 identified by match to protein family HMM PF00665 YP_760719.1 identified by match to protein family HMM PF03364 YP_760720.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_760721.1 identified by similarity to SP:P31119; match to protein family HMM PF00501 YP_760722.1 identified by match to protein family HMM PF00561 YP_760723.1 identified by similarity to GB:BAB78721.1; match to protein family HMM PF00561; match to protein family HMM PF07167 YP_760724.1 identified by similarity to GB:BAB78722.1; match to protein family HMM PF00440 YP_760725.1 identified by match to protein family HMM PF01738 YP_760726.1 identified by similarity to GB:CAA11074.1; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154 YP_760727.1 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_760728.1 identified by similarity to GB:BAA08137.1; match to protein family HMM PF00005; match to protein family HMM TIGR00972 YP_760729.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_760730.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_760731.1 heat shock protein involved in degradation of misfolded proteins YP_760732.1 heat shock protein involved in degradation of misfolded proteins YP_760733.1 identified by match to protein family HMM PF01638 YP_760734.1 identified by match to protein family HMM PF00294 YP_760735.1 identified by similarity to GB:AAK25694.1 YP_760737.1 identified by match to protein family HMM PF03572 YP_760738.1 identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_760740.1 identified by match to protein family HMM PF00067 YP_760741.1 identified by match to protein family HMM PF00881 YP_760743.1 identified by similarity to GB:AAF19809.1; match to protein family HMM PF01648; match to protein family HMM TIGR00556 YP_760744.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_760745.1 identified by match to protein family HMM PF02616 YP_760746.1 identified by similarity to SP:P75949; match to protein family HMM PF00933 YP_760747.1 identified by similarity to GB:AAN29806.1; match to protein family HMM PF05036 YP_760748.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353 YP_760749.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_760750.1 identified by similarity to GB:AAF18956.1; match to protein family HMM PF06441 YP_760752.1 identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_760753.1 identified by match to protein family HMM PF00885; match to protein family HMM TIGR00114 YP_760754.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_760755.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_760756.1 identified by match to protein family HMM PF01872; match to protein family HMM TIGR00227 YP_760757.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_760758.1 identified by match to protein family HMM PF00464 YP_760759.1 identified by match to protein family HMM PF05443 YP_760760.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_760761.1 identified by match to protein family HMM PF00596 YP_760762.1 identified by match to protein family HMM PF01513 YP_760763.1 identified by match to protein family HMM PF01627 YP_760764.1 identified by match to protein family HMM PF00293 YP_760767.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_760768.1 identified by match to protein family HMM PF01040 YP_760770.1 identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062 YP_760772.1 identified by similarity to SP:P11830 YP_760773.1 identified by match to protein family HMM PF00501 YP_760774.1 identified by match to protein family HMM PF00106 YP_760775.1 identified by similarity to GB:BAC18881.1 YP_760776.1 identified by match to protein family HMM PF00583 YP_760777.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_760778.1 identified by match to protein family HMM PF00300 YP_760780.1 identified by similarity to SP:P05826; match to protein family HMM PF00543 YP_760781.1 identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_760782.1 identified by match to protein family HMM PF00149 YP_760783.1 binds and unfolds substrates as part of the ClpXP protease YP_760784.1 identified by similarity to SP:P19245; match to protein family HMM PF00574 YP_760785.1 identified by match to protein family HMM PF00561 YP_760786.1 identified by match to protein family HMM PF00561 YP_760787.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389 YP_760789.1 identified by similarity to SP:P33695; match to protein family HMM PF00535 YP_760790.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_760791.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_760792.1 identified by similarity to SP:P29935; match to protein family HMM PF02277 YP_760793.1 identified by similarity to GB:AAK23289.1; match to protein family HMM PF06945 YP_760794.1 identified by similarity to GB:AAK23288.1; match to protein family HMM TIGR02281 YP_760795.1 identified by similarity to SP:P70789; match to protein family HMM PF00224; match to protein family HMM TIGR01064 YP_760796.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_760797.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082 YP_760799.1 identified by similarity to SP:O33465; match to protein family HMM PF02574 YP_760800.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_760801.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01209; match to protein family HMM PF05175 YP_760802.1 identified by match to protein family HMM PF04333 YP_760803.1 identified by match to protein family HMM PF05494 YP_760804.1 identified by similarity to GB:AAD51362.2; match to protein family HMM PF03806 YP_760805.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_760807.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_760808.1 identified by similarity to GB:CAA67864.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_760809.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_760810.1 identified by match to protein family HMM PF00440 YP_760812.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_760813.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_760814.1 identified by match to protein family HMM PF03171 YP_760815.1 identified by similarity to SP:Q9LRS0; match to protein family HMM PF01070 YP_760816.1 identified by similarity to SP:P39849; match to protein family HMM PF00107 YP_760817.1 identified by match to protein family HMM PF00440 YP_760818.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760820.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_760821.1 identified by match to protein family HMM PF02682 YP_760822.1 identified by match to protein family HMM PF03746 YP_760823.1 identified by match to protein family HMM PF01566 YP_760824.1 identified by similarity to GB:CAD75571.1 YP_760825.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760826.1 identified by similarity to GB:BAC09073.1 YP_760827.1 identified by match to protein family HMM PF00440 YP_760828.1 identified by match to protein family HMM PF01614 YP_760829.1 identified by match to protein family HMM PF05336 YP_760830.1 identified by match to protein family HMM PF01188 YP_760831.1 identified by match to protein family HMM PF00248 YP_760832.1 identified by match to protein family HMM PF04909 YP_760833.1 identified by match to protein family HMM PF00106 YP_760834.1 identified by match to protein family HMM PF01557 YP_760835.1 identified by match to protein family HMM PF05494 YP_760839.1 identified by match to protein family HMM PF05658 YP_760840.1 identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937 YP_760841.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721 YP_760843.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02897; match to protein family HMM TIGR01409 YP_760844.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_760845.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_760847.1 identified by match to protein family HMM PF00639 YP_760848.1 identified by match to protein family HMM PF04166 YP_760849.1 identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755 YP_760850.1 identified by match to protein family HMM PF00625 YP_760851.1 identified by similarity to GB:AAN29406.1; match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_760852.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_760853.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_760854.1 carries the fatty acid chain in fatty acid biosynthesis YP_760855.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830 YP_760857.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_760858.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_760859.1 identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165 YP_760860.1 identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 YP_760861.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_760862.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_760863.1 identified by match to protein family HMM PF00378 YP_760864.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_760866.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00313 YP_760867.1 identified by match to protein family HMM PF07845 YP_760870.1 identified by similarity to GB:AAK24889.1; match to protein family HMM PF03929 YP_760871.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_760872.1 identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_760873.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function YP_760874.1 identified by match to protein family HMM PF00884 YP_760875.1 identified by similarity to GB:AAS06170.1 YP_760876.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760877.1 identified by match to protein family HMM PF01380 YP_760878.1 identified by similarity to SP:P42414; match to protein family HMM PF00294 YP_760879.1 identified by similarity to GB:AAK23280.1; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_760880.1 identified by similarity to SP:P42416; match to protein family HMM PF01261 YP_760881.1 identified by similarity to SP:P42413; match to protein family HMM PF06845 YP_760882.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_760883.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_760884.1 identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_760885.1 identified by similarity to SP:P77485; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_760886.1 identified by match to protein family HMM PF00873 YP_760887.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_760888.1 identified by match to protein family HMM PF00106 YP_760889.1 identified by match to protein family HMM PF01047 YP_760890.1 identified by similarity to GB:BAC90391.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_760891.1 identified by match to protein family HMM PF07681 YP_760892.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01409 YP_760893.1 identified by similarity to GB:CAD47159.1; match to protein family HMM PF03692 YP_760894.1 identified by similarity to GB:CAD17738.1 YP_760895.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_760896.1 identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_760898.1 identified by similarity to SP:Q51698; match to protein family HMM PF01315 YP_760900.1 identified by match to protein family HMM PF00248 YP_760901.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_760902.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_760903.1 identified by match to protein family HMM PF00067 YP_760904.1 identified by match to protein family HMM PF01494 YP_760905.1 identified by match to protein family HMM PF00440 YP_760906.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_760907.1 identified by match to protein family HMM PF00884 YP_760908.1 identified by similarity to GB:AAS04729.1 YP_760909.1 thiamine-pyrophosphate requiring enzyme YP_760910.1 identified by similarity to GB:AAM35763.1 YP_760911.1 identified by match to protein family HMM PF07690 YP_760912.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_760913.1 identified by match to protein family HMM PF01557 YP_760914.1 identified by similarity to SP:P47233; match to protein family HMM PF00903 YP_760915.1 identified by match to protein family HMM PF00171 YP_760916.1 identified by match to protein family HMM PF00596 YP_760917.1 identified by match to protein family HMM PF00106 YP_760918.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_760919.1 identified by match to protein family HMM PF07690 YP_760920.1 identified by match to protein family HMM PF06629 YP_760921.1 identified by match to protein family HMM PF00248 YP_760922.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_760924.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_760925.1 identified by similarity to GB:CAE27922.1 YP_760926.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_760927.1 identified by similarity to GB:AAK22594.1 YP_760928.1 identified by similarity to SP:P38043 YP_760929.1 identified by similarity to PIR:S70540; match to protein family HMM PF00072; match to protein family HMM PF03861 YP_760930.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_760931.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_760932.1 identified by match to protein family HMM PF01226 YP_760933.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00481 YP_760936.1 identified by match to protein family HMM PF02706 YP_760937.1 identified by match to protein family HMM PF03171 YP_760938.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_760939.1 identified by similarity to SP:P27888; match to protein family HMM PF00883; match to protein family HMM PF02789 YP_760940.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_760941.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_760942.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_760943.1 identified by match to protein family HMM PF01220; match to protein family HMM TIGR01088 YP_760944.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_760945.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 YP_760946.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_760948.1 identified by match to protein family HMM PF02470 YP_760949.1 identified by match to protein family HMM PF05071 YP_760951.1 identified by match to protein family HMM PF00805 YP_760952.1 identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459 YP_760953.1 identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388 YP_760954.1 identified by match to protein family HMM PF02541 YP_760955.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_760956.1 identified by similarity to GB:BAB53627.1 YP_760958.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878 YP_760959.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_760960.1 identified by similarity to GB:AAN30499.1 YP_760961.1 identified by match to protein family HMM PF00107 YP_760964.1 identified by similarity to SP:Q59636; match to protein family HMM PF00334 YP_760965.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_760966.1 identified by match to protein family HMM PF00583 YP_760967.1 identified by match to protein family HMM PF04364 YP_760968.1 identified by match to protein family HMM PF00883; match to protein family HMM PF02789 YP_760969.1 identified by match to protein family HMM PF03739 YP_760970.1 identified by match to protein family HMM PF03739 YP_760971.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_760975.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_760976.1 identified by match to protein family HMM PF00293 YP_760977.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_760978.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_760979.1 identified by similarity to GB:AAA87378.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_760980.1 identified by similarity to PDB:1M5T_A; match to protein family HMM PF00072 YP_760981.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_760982.1 identified by match to protein family HMM PF01042 YP_760983.1 identified by match to protein family HMM PF03009 YP_760984.1 identified by similarity to GB:CAC46070.1; match to protein family HMM PF04339 YP_760985.1 identified by match to protein family HMM PF01230 YP_760986.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_760988.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_760990.1 identified by match to protein family HMM PF00856 YP_760994.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_760995.1 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250 YP_760996.1 identified by match to protein family HMM PF03547 YP_760997.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670 YP_760998.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_760999.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_761000.1 identified by similarity to GB:AAM39700.1; match to protein family HMM TIGR02096 YP_761001.1 identified by match to protein family HMM PF00583 YP_761002.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389 YP_761003.1 identified by match to protein family HMM PF00501 YP_761004.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_761005.1 identified by match to protein family HMM PF00742; match to protein family HMM PF01113; match to protein family HMM PF01842; match to protein family HMM PF03447 YP_761006.1 identified by match to protein family HMM PF00155 YP_761008.1 identified by similarity to SP:P52070; match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838 YP_761009.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_761010.1 forms a direct contact with the tRNA during translation YP_761011.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_761013.1 identified by match to protein family HMM PF02628 YP_761015.1 identified by match to protein family HMM PF00440 YP_761016.1 identified by similarity to SP:P38942 YP_761017.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_761018.1 identified by match to protein family HMM PF02515 YP_761019.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_761020.1 identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_761021.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_761023.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07676 YP_761024.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_761025.1 identified by match to protein family HMM PF03929 YP_761026.1 identified by match to protein family HMM PF07859 YP_761028.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01236 YP_761029.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_761030.1 identified by match to protein family HMM PF00171 YP_761031.1 identified by match to protein family HMM PF00149 YP_761034.1 identified by match to protein family HMM PF07568 YP_761035.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_761039.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_761040.1 identified by similarity to GB:AAN30562.1; match to protein family HMM PF05957 YP_761042.1 identified by match to protein family HMM PF02080 YP_761043.1 identified by match to protein family HMM PF07043 YP_761044.1 identified by match to protein family HMM PF05532 YP_761045.1 identified by match to protein family HMM PF00989; match to protein family HMM PF07536; match to protein family HMM TIGR00229 YP_761046.1 identified by similarity to SP:P40679 YP_761047.1 identified by match to protein family HMM PF01638 YP_761048.1 identified by match to protein family HMM PF00106 YP_761049.1 identified by similarity to SP:Q51948; match to protein family HMM PF01323 YP_761050.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761051.1 identified by similarity to GB:AAQ58180.1; match to protein family HMM PF01925 YP_761052.1 identified by match to protein family HMM PF00155 YP_761053.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254 YP_761055.1 identified by match to protein family HMM PF03413 YP_761056.1 identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_761057.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_761058.1 identified by similarity to PIR:H86766 YP_761059.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_761060.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_761061.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_761062.1 identified by match to protein family HMM PF01063 YP_761063.1 identified by similarity to SP:P28819; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_761064.1 identified by similarity to SP:P05041; match to protein family HMM PF00425; match to protein family HMM PF04715 YP_761067.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_761068.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_761069.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_761070.1 identified by match to protein family HMM PF01042 YP_761071.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_761072.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_761073.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_761076.1 identified by similarity to SP:P75821; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_761077.1 identified by match to protein family HMM PF00753 YP_761078.1 identified by match to protein family HMM TIGR02304 YP_761079.1 identified by similarity to GB:AAK31353.1 YP_761081.1 identified by match to protein family HMM PF00575 YP_761082.1 identified by match to protein family HMM PF01047 YP_761083.1 identified by similarity to SP:O68390; match to protein family HMM PF02566 YP_761084.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761085.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_761086.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_761087.1 identified by similarity to GB:AAR37535.1 YP_761088.1 identified by similarity to SP:P22773; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018 YP_761089.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_761090.1 identified by similarity to SP:P42084; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224 YP_761091.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_761092.1 identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017 YP_761093.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_761094.1 identified by match to protein family HMM PF08212 YP_761095.1 identified by similarity to SP:P77486; match to protein family HMM PF06629 YP_761096.1 identified by match to protein family HMM PF00440 YP_761099.1 identified by match to protein family HMM PF00529 YP_761100.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_761101.1 identified by similarity to GB:AAK25385.1; match to protein family HMM PF05175 YP_761103.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761104.1 identified by similarity to SP:P09394; match to protein family HMM PF03009 YP_761107.1 identified by match to protein family HMM PF07969 YP_761108.1 identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561 YP_761109.1 identified by similarity to GB:CAD17846.1; match to protein family HMM PF00890; match to protein family HMM PF01266 YP_761110.1 identified by match to protein family HMM PF00440 YP_761111.1 identified by similarity to SP:P29011; match to protein family HMM PF01266 YP_761112.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_761113.1 identified by similarity to SP:P23893; match to protein family HMM PF00202 YP_761114.1 identified by match to protein family HMM PF00294 YP_761115.1 identified by match to protein family HMM PF00596 YP_761116.1 identified by similarity to GB:BAB47763.1 YP_761118.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761119.1 identified by match to protein family HMM PF00440 YP_761120.1 identified by similarity to GB:BAC51041.1 YP_761121.1 identified by match to protein family HMM PF00085 YP_761122.1 identified by similarity to GB:CAA66112.1; match to protein family HMM PF07992 YP_761124.1 identified by similarity to SP:P37973; match to protein family HMM TIGR01730 YP_761125.1 identified by match to protein family HMM PF00873 YP_761126.1 identified by similarity to SP:P28267; match to protein family HMM PF01022 YP_761127.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_761128.1 identified by similarity to SP:Q08257; match to protein family HMM PF00107 YP_761130.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_761133.1 identified by match to protein family HMM PF03358 YP_761134.1 identified by similarity to GB:AAK23325.1 YP_761135.1 identified by match to protein family HMM PF00440 YP_761136.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_761137.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02771 YP_761138.1 identified by match to protein family HMM PF00378 YP_761139.1 identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501 YP_761140.1 identified by match to protein family HMM TIGR00792 YP_761141.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM PF07691 YP_761142.1 identified by match to protein family HMM PF00440 YP_761143.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761144.1 identified by match to protein family HMM PF00884 YP_761145.1 identified by match to protein family HMM PF07690 YP_761146.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_761147.1 identified by similarity to GB:BAB51192.1; match to protein family HMM PF05787 YP_761149.1 identified by match to protein family HMM PF00691 YP_761150.1 identified by match to protein family HMM PF00245 YP_761151.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761152.1 identified by similarity to SP:P15302; match to protein family HMM PF00702 YP_761153.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_761154.1 identified by match to protein family HMM TIGR01098 YP_761155.1 identified by similarity to SP:P16677; match to protein family HMM PF00005 YP_761156.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_761157.1 identified by similarity to GB:CAB65715.2; match to protein family HMM PF00999 YP_761158.1 identified by match to protein family HMM PF01757 YP_761160.1 identified by similarity to GB:BAB51085.1 YP_761161.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594 YP_761162.1 identified by match to protein family HMM PF00199; match to protein family HMM PF06628 YP_761163.1 identified by match to protein family HMM PF01266 YP_761164.1 identified by similarity to SP:P08821; match to protein family HMM PF00216 YP_761165.1 identified by match to protein family HMM PF00107 YP_761166.1 identified by match to protein family HMM PF00196 YP_761171.1 identified by similarity to GB:AAF99434.1 YP_761172.1 identified by similarity to GB:CAB94381.1 YP_761173.1 with SoxZ catalyzes the oxidation of sulfur compounds YP_761174.1 identified by similarity to GB:AAF99431.1 YP_761175.1 identified by similarity to SP:Q06530; match to protein family HMM PF07992; match to protein family HMM TIGR01409 YP_761176.1 identified by similarity to SP:P20958 YP_761177.1 identified by similarity to SP:Q51698; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409 YP_761178.1 identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_761181.1 identified by similarity to GB:BAC81190.1 YP_761182.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 YP_761183.1 identified by match to protein family HMM PF01053; match to protein family HMM PF03841; match to protein family HMM TIGR00474 YP_761184.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM PF07992 YP_761185.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_761189.1 identified by match to protein family HMM PF00577 YP_761190.1 identified by similarity to GB:AAN82651.1 YP_761194.1 identified by match to protein family HMM PF00171 YP_761195.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_761196.1 identified by match to protein family HMM PF00196 YP_761197.1 identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378 YP_761198.1 identified by match to protein family HMM PF06032 YP_761199.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761200.1 identified by match to protein family HMM PF00128 YP_761201.1 identified by match to protein family HMM PF01063 YP_761202.1 identified by match to protein family HMM PF00440 YP_761204.1 identified by match to protein family HMM PF01258 YP_761205.1 identified by similarity to GB:BAB52672.1 YP_761206.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_761207.1 identified by similarity to PIR:AH2137 YP_761208.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958 YP_761210.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_761211.1 identified by match to protein family HMM PF00437 YP_761212.1 identified by match to protein family HMM PF00482 YP_761215.1 identified by match to protein family HMM PF05137 YP_761218.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_761220.1 identified by similarity to SP:Q07833; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_761222.1 identified by similarity to GB:BAC46141.1 YP_761223.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_761224.1 identified by match to protein family HMM PF02195; match to protein family HMM PF07506 YP_761225.1 identified by match to protein family HMM PF02195; match to protein family HMM PF07506 YP_761226.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614 YP_761228.1 identified by match to protein family HMM PF01381 YP_761231.1 identified by match to protein family HMM PF06508 YP_761232.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_761233.1 identified by similarity to GB:AAM05802.1 YP_761234.1 identified by match to protein family HMM PF01420 YP_761235.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02384 YP_761236.1 identified by match to protein family HMM PF01381 YP_761238.1 identified by match to protein family HMM PF01555; match to protein family HMM PF02195 YP_761240.1 identified by similarity to PIR:H97760; match to protein family HMM TIGR01630 YP_761241.1 identified by similarity to GB:BAD02109.1 YP_761242.1 identified by match to protein family HMM PF00899 YP_761244.1 identified by match to protein family HMM PF00580; match to protein family HMM PF06114 YP_761248.1 identified by similarity to GB:CAD86452.1 YP_761249.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_761250.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_761251.1 fusion of ribosomal protein L21 and COG3743 YP_761252.1 involved in the peptidyltransferase reaction during translation YP_761253.1 identified by match to protein family HMM PF00583 YP_761254.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_761257.1 identified by match to protein family HMM PF00486; match to protein family HMM PF00515; match to protein family HMM PF07721 YP_761258.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_761259.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_761260.1 identified by match to protein family HMM PF00583 YP_761262.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization YP_761263.1 identified by match to protein family HMM PF02551 YP_761264.1 identified by match to protein family HMM PF00165 YP_761265.1 identified by similarity to SP:Q02375; match to protein family HMM PF04800 YP_761266.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_761267.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552 YP_761269.1 identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464 YP_761271.1 identified by match to protein family HMM PF01152 YP_761274.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672 YP_761275.1 identified by match to protein family HMM PF01037 YP_761276.1 identified by match to protein family HMM PF01042; match to protein family HMM PF01979 YP_761277.1 identified by match to protein family HMM PF00450 YP_761278.1 identified by match to protein family HMM PF00266 YP_761279.1 identified by match to protein family HMM PF00450 YP_761280.1 identified by match to protein family HMM PF01488; match to protein family HMM PF02423 YP_761281.1 identified by match to protein family HMM PF00450 YP_761282.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761283.1 identified by match to protein family HMM PF00324 YP_761284.1 identified by match to protein family HMM PF00155 YP_761288.1 identified by match to protein family HMM PF00501 YP_761289.1 identified by match to protein family HMM PF01638 YP_761290.1 identified by similarity to GB:AAK22656.1 YP_761291.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_761292.1 identified by similarity to SP:P04957; match to protein family HMM PF00722 YP_761293.1 identified by match to protein family HMM PF07345 YP_761294.1 identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081 YP_761295.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302 YP_761296.1 identified by match to protein family HMM PF00440 YP_761297.1 identified by similarity to GB:AAD38301.1; match to protein family HMM PF01553 YP_761298.1 identified by similarity to SP:P30743; match to protein family HMM PF00893 YP_761300.1 identified by similarity to GB:CAE36672.1 YP_761301.1 identified by similarity to PDB:1R94_A; match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_761302.1 identified by similarity to GB:AAN29861.1; match to protein family HMM PF01883; match to protein family HMM TIGR02945 YP_761303.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_761304.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_761305.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_761308.1 with SufCD activates cysteine desulfurase SufS YP_761309.1 identified by match to protein family HMM PF00266 YP_761310.1 identified by similarity to GB:AAK23842.1 YP_761311.1 identified by match to protein family HMM PF00583 YP_761312.1 identified by match to protein family HMM PF00665 YP_761313.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_761314.1 identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234 YP_761316.1 identified by match to protein family HMM PF00578 YP_761317.1 identified by match to protein family HMM PF01551 YP_761318.1 identified by match to protein family HMM PF04519 YP_761320.1 identified by match to protein family HMM TIGR01352 YP_761321.1 identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472 YP_761322.1 identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472 YP_761323.1 identified by similarity to GB:AAC69454.1; match to protein family HMM PF01618 YP_761324.1 identified by match to protein family HMM PF01618 YP_761326.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706 YP_761327.1 identified by similarity to SP:O54067; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_761328.1 identified by match to protein family HMM PF00849 YP_761329.1 identified by match to protein family HMM PF01636 YP_761330.1 identified by match to protein family HMM PF00004 YP_761331.1 identified by match to protein family HMM PF02668 YP_761332.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_761334.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_761335.1 identified by match to protein family HMM PF03992 YP_761336.1 identified by similarity to SP:P33691; match to protein family HMM PF00535 YP_761337.1 identified by similarity to GB:AAC46052.1; match to protein family HMM PF00149 YP_761338.1 identified by match to protein family HMM PF02563 YP_761339.1 identified by similarity to SP:Q02731; match to protein family HMM PF02397 YP_761340.1 identified by similarity to SP:P37073; match to protein family HMM PF00722 YP_761341.1 identified by similarity to SP:P25960; match to protein family HMM PF01478 YP_761342.1 identified by match to protein family HMM PF00571 YP_761343.1 identified by match to protein family HMM PF01694 YP_761344.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761346.1 identified by similarity to SP:Q46560; match to protein family HMM PF01381; match to protein family HMM TIGR02607 YP_761347.1 identified by match to protein family HMM PF05015 YP_761348.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_761350.1 identified by match to protein family HMM PF00132 YP_761351.1 identified by match to protein family HMM PF02562 YP_761352.1 identified by similarity to GB:AAS71125.1 YP_761353.1 protein associated with Co2+ and Mg2+ efflux YP_761354.1 identified by similarity to SP:P55218; match to protein family HMM PF00155; match to protein family HMM PF01053; match to protein family HMM TIGR01325 YP_761355.1 Catalyzes the deamination of dCTP to form dUTP YP_761356.1 identified by match to protein family HMM PF00324 YP_761359.1 identified by match to protein family HMM PF04338 YP_761360.1 identified by similarity to GB:BAB48250.1; match to protein family HMM PF00227 YP_761361.1 identified by match to protein family HMM PF01841 YP_761362.1 identified by similarity to PIR:AB2864; match to protein family HMM PF04168 YP_761363.1 identified by similarity to PIR:D95989; match to protein family HMM PF04169; match to protein family HMM PF04174 YP_761364.1 identified by match to protein family HMM PF02080 YP_761365.1 identified by match to protein family HMM PF01757 YP_761366.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_761370.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_761371.1 identified by similarity to SP:O31616; match to protein family HMM PF01266 YP_761373.1 identified by match to protein family HMM PF01547 YP_761374.1 identified by match to protein family HMM PF00528 YP_761375.1 identified by match to protein family HMM PF00005 YP_761376.1 identified by match to protein family HMM PF01435 YP_761377.1 identified by similarity to PIR:A49232; match to protein family HMM PF01323 YP_761378.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_761379.1 identified by match to protein family HMM PF00472 YP_761381.1 identified by match to protein family HMM PF00293 YP_761385.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_761386.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_761387.1 identified by similarity to GB:CAB45042.1 YP_761390.1 identified by match to protein family HMM PF00581 YP_761391.1 identified by similarity to GB:CAE38612.1 YP_761392.1 identified by similarity to GB:AAM36379.1 YP_761393.1 identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216 YP_761395.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_761397.1 identified by match to protein family HMM PF03372 YP_761399.1 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528 YP_761400.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_761401.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_761402.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_761403.1 identified by similarity to SP:P26502; match to protein family HMM PF01757 YP_761405.1 identified by match to protein family HMM PF01979 YP_761406.1 identified by match to protein family HMM PF01979 YP_761408.1 identified by match to protein family HMM PF07370 YP_761411.1 identified by match to protein family HMM PF07883 YP_761412.1 identified by similarity to GB:CAG35112.1; match to protein family HMM PF01925 YP_761413.1 identified by similarity to GB:BAA31229.1; match to protein family HMM PF02386 YP_761415.1 identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812 YP_761416.1 identified by match to protein family HMM PF00582 YP_761418.1 identified by match to protein family HMM PF07992 YP_761419.1 identified by match to protein family HMM PF02082 YP_761420.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_761421.1 identified by similarity to SP:Q08327; match to protein family HMM PF00154; match to protein family HMM TIGR02012 YP_761425.1 identified by similarity to SP:P40783; match to protein family HMM PF00107 YP_761426.1 identified by match to protein family HMM PF00903 YP_761428.1 identified by match to protein family HMM PF00378 YP_761429.1 identified by match to protein family HMM PF03741 YP_761430.1 identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561 YP_761433.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_761434.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_761436.1 identified by similarity to SP:O32054; match to protein family HMM PF02547 YP_761437.1 identified by match to protein family HMM PF00160 YP_761438.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510 YP_761439.1 identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_761440.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646 YP_761441.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_761442.1 identified by similarity to SP:P05191; match to protein family HMM PF00905 YP_761443.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_761444.1 identified by similarity to SP:Q50968; match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_761447.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_761448.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_761449.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_761450.1 identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_761451.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_761452.1 identified by similarity to GB:BAC52694.1; match to protein family HMM PF01925 YP_761453.1 identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_761454.1 identified by similarity to GB:AAS14895.1; match to protein family HMM PF00999; match to protein family HMM PF02254 YP_761455.1 identified by match to protein family HMM PF00383 YP_761456.1 identified by match to protein family HMM PF00378 YP_761457.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_761459.1 identified by match to protein family HMM PF01734 YP_761460.1 identified by match to protein family HMM PF05958 YP_761461.1 identified by similarity to SP:Q58549; match to protein family HMM PF00293 YP_761462.1 identified by match to protein family HMM PF00106 YP_761465.1 identified by similarity to GB:AAF98273.1; match to protein family HMM PF00478; match to protein family HMM PF03060 YP_761466.1 identified by match to protein family HMM PF01544 YP_761467.1 identified by match to protein family HMM PF07995 YP_761468.1 identified by match to protein family HMM PF02826 YP_761469.1 identified by match to protein family HMM TIGR02301 YP_761470.1 identified by match to protein family HMM PF01019 YP_761471.1 identified by match to protein family HMM PF03167 YP_761472.1 identified by match to protein family HMM PF00440 YP_761473.1 identified by match to protein family HMM PF01636 YP_761474.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_761475.1 identified by match to protein family HMM PF00107 YP_761476.1 identified by match to protein family HMM PF00067 YP_761477.1 identified by match to protein family HMM PF03031 YP_761478.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_761479.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_761480.1 identified by similarity to SP:P03810; match to protein family HMM PF01464 YP_761482.1 identified by similarity to GB:CAA06926.1; match to protein family HMM PF00171 YP_761483.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_761485.1 identified by match to protein family HMM PF04993 YP_761488.1 identified by match to protein family HMM PF00144 YP_761489.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_761490.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_761491.1 identified by similarity to GB:AAO66470.1; match to protein family HMM PF00106 YP_761492.1 identified by match to protein family HMM PF01433 YP_761493.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_761494.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761495.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_761496.1 identified by match to protein family HMM PF00450 YP_761497.1 identified by match to protein family HMM PF00903 YP_761498.1 identified by match to protein family HMM PF00106 YP_761499.1 identified by match to protein family HMM PF00050; match to protein family HMM PF07648 YP_761501.1 identified by similarity to GB:AAV93946.1 YP_761503.1 identified by match to protein family HMM PF00149 YP_761504.1 identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059 YP_761505.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_761506.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_761507.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_761508.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_761509.1 identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967 YP_761510.1 identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071 YP_761511.1 identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308 YP_761512.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_761513.1 identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060 YP_761514.1 identified by match to protein family HMM PF00347 YP_761515.1 identified by match to protein family HMM PF00410 YP_761516.1 identified by match to protein family HMM PF00253 YP_761517.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_761518.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_761519.1 identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067 YP_761520.1 identified by match to protein family HMM PF00366 YP_761521.1 identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012 YP_761522.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_761523.1 identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009 YP_761524.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_761525.1 identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050 YP_761526.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_761527.1 identified by match to protein family HMM PF00276 YP_761528.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_761529.1 identified by match to protein family HMM PF00297 YP_761530.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049 YP_761531.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_761532.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_761533.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_761534.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_761535.1 identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386 YP_761536.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_761537.1 identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855 YP_761538.1 identified by match to protein family HMM PF00466 YP_761542.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_761543.1 identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632 YP_761544.1 identified by match to protein family HMM PF01435 YP_761547.1 identified by similarity to GB:BAC46349.1 YP_761548.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_761549.1 identified by similarity to GB:CAF24517.1 YP_761551.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761552.1 identified by similarity to SP:P23843; match to protein family HMM PF00496 YP_761553.1 identified by similarity to GB:AAK24786.1 YP_761554.1 identified by match to protein family HMM PF00753 YP_761556.1 identified by match to protein family HMM PF04273; match to protein family HMM TIGR01244 YP_761557.1 identified by similarity to SP:P31132; match to protein family HMM PF00528 YP_761558.1 identified by similarity to SP:P77664; match to protein family HMM PF00528 YP_761559.1 identified by match to protein family HMM PF00561 YP_761560.1 identified by match to protein family HMM PF00903 YP_761561.1 identified by match to protein family HMM PF01841 YP_761562.1 identified by match to protein family HMM PF04228 YP_761563.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_761564.1 identified by similarity to GB:AAK25071.1; match to protein family HMM PF01904 YP_761566.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_761567.1 synthesizes RNA primers at the replication forks YP_761568.1 identified by similarity to GB:BAB50529.1 YP_761569.1 identified by similarity to GB:CAC46898.1; match to protein family HMM PF02637 YP_761570.1 identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368 YP_761571.1 identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_761572.1 identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_761574.1 identified by match to protein family HMM PF01557 YP_761577.1 identified by match to protein family HMM PF00903 YP_761578.1 identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_761579.1 identified by match to protein family HMM PF01047 YP_761581.1 identified by match to protein family HMM PF00561 YP_761583.1 identified by similarity to SP:Q47839; match to protein family HMM PF03965 YP_761584.1 identified by match to protein family HMM PF05569 YP_761586.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_761587.1 identified by match to protein family HMM PF00300 YP_761588.1 identified by similarity to SP:P37894; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_761589.1 identified by similarity to SP:P04825; match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_761592.1 identified by similarity to GB:AAK24451.1 YP_761593.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02771 YP_761595.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_761596.1 identified by similarity to PIR:C97558 YP_761597.1 identified by match to protein family HMM PF02470 YP_761598.1 identified by similarity to GB:AAS95092.1; match to protein family HMM PF00005 YP_761599.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_761600.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_761602.1 identified by match to protein family HMM PF00005 YP_761603.1 identified by match to protein family HMM PF00583 YP_761604.1 identified by similarity to GB:AAK23214.1 YP_761605.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_761606.1 identified by match to protein family HMM PF04241 YP_761607.1 identified by similarity to SP:O57524 YP_761608.1 identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_761609.1 identified by similarity to GB:BAB98439.1 YP_761610.1 identified by match to protein family HMM PF00209 YP_761611.1 identified by match to protein family HMM PF01098 YP_761612.1 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_761614.1 identified by similarity to SP:P16926; match to protein family HMM PF04085 YP_761615.1 functions in MreBCD complex in some organisms YP_761616.1 identified by similarity to SP:P03018; match to protein family HMM PF00580 YP_761617.1 identified by match to protein family HMM PF05170 YP_761619.1 identified by similarity to GB:BAC94104.1 YP_761620.1 identified by match to protein family HMM PF00724 YP_761623.1 identified by similarity to GB:AAV95182.1 YP_761626.1 identified by similarity to GB:AAW77844.1 YP_761628.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_761630.1 identified by match to protein family HMM PF05866 YP_761631.1 identified by match to protein family HMM PF00067 YP_761632.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_761633.1 identified by similarity to GB:AAK24073.1; match to protein family HMM PF07031 YP_761634.1 identified by match to protein family HMM PF00282 YP_761636.1 identified by match to protein family HMM PF01663 YP_761637.1 identified by match to protein family HMM PF00326 YP_761638.1 identified by match to protein family HMM PF02798 YP_761639.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01409 YP_761642.1 identified by match to protein family HMM PF00440 YP_761643.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_761645.1 identified by similarity to SP:Q02635; match to protein family HMM PF00155 YP_761646.1 identified by match to protein family HMM PF00210 YP_761647.1 identified by match to protein family HMM PF07859 YP_761650.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_761651.1 identified by match to protein family HMM PF00106 YP_761652.1 identified by match to protein family HMM PF00107 YP_761653.1 identified by match to protein family HMM PF07859 YP_761654.1 identified by match to protein family HMM PF00440 YP_761655.1 identified by match to protein family HMM PF03458 YP_761656.1 identified by match to protein family HMM PF07693 YP_761659.1 identified by match to protein family HMM PF01551 YP_761660.1 identified by similarity to SP:P49326; match to protein family HMM PF00743 YP_761661.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_761662.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_761663.1 identified by similarity to GB:AAK24429.1 YP_761664.1 identified by similarity to GB:AAM40707.1 YP_761665.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain YP_761666.1 identified by match to protein family HMM PF00534 YP_761667.1 identified by similarity to SP:P39665 YP_761668.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_761669.1 identified by similarity to SP:P22634; match to protein family HMM PF01177; match to protein family HMM TIGR00067 YP_761671.1 identified by similarity to GB:CAE36316.1 YP_761672.1 identified by similarity to SP:Q59637 YP_761673.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_761674.1 identified by match to protein family HMM PF00795 YP_761675.1 identified by match to protein family HMM PF04371 YP_761676.1 identified by similarity to SP:P38370 YP_761677.1 identified by similarity to GB:AAK22196.1 YP_761678.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_761679.1 identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073 YP_761680.1 identified by match to protein family HMM PF01835; match to protein family HMM PF07703 YP_761681.1 identified by similarity to GB:AAK23039.1; match to protein family HMM PF01370 YP_761682.1 identified by match to protein family HMM PF00515 YP_761684.1 identified by match to protein family HMM PF00883; match to protein family HMM PF02789 YP_761685.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_761686.1 identified by match to protein family HMM PF00482 YP_761687.1 identified by similarity to GB:AAF40196.1; match to protein family HMM PF00482 YP_761688.1 identified by similarity to GB:AAF40195.1; match to protein family HMM PF00437 YP_761689.1 identified by similarity to GB:AAF40194.1 YP_761690.1 identified by similarity to GB:AAF40193.1; match to protein family HMM TIGR02522 YP_761691.1 identified by similarity to GB:AAF40192.1; match to protein family HMM PF00263; match to protein family HMM PF04972 YP_761692.1 identified by similarity to GB:AAF40191.1; match to protein family HMM PF06981 YP_761693.1 identified by similarity to GB:AAF40190.1; match to protein family HMM PF01478 YP_761694.1 identified by match to protein family HMM PF04964 YP_761695.1 identified by similarity to GB:BAC46709.1 YP_761696.1 identified by match to protein family HMM PF07811 YP_761698.1 identified by similarity to GB:AAK24916.1 YP_761699.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_761701.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_761702.1 identified by match to protein family HMM PF01098 YP_761703.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_761704.1 identified by similarity to SP:P15876; match to protein family HMM PF00953; match to protein family HMM TIGR00445 YP_761705.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_761706.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 YP_761707.1 identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_761709.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_761711.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00777; match to protein family HMM TIGR00778 YP_761712.1 identified by similarity to GB:AAC61301.1; match to protein family HMM PF00578 YP_761713.1 identified by similarity to SP:P11721; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_761714.1 identified by similarity to GB:AAK23460.1 YP_761715.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01047 YP_761716.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_761717.1 identified by match to protein family HMM PF01384 YP_761721.1 identified by similarity to GB:BAD64522.1 YP_761722.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_761726.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_761727.1 identified by match to protein family HMM PF00440 YP_761728.1 identified by match to protein family HMM PF00561 YP_761729.1 identified by match to protein family HMM PF07690 YP_761730.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_761732.1 identified by similarity to SP:P36880; match to protein family HMM PF01061 YP_761733.1 identified by match to protein family HMM PF07750 YP_761734.1 identified by similarity to SP:P23545; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_761735.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_761736.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_761737.1 identified by match to protein family HMM PF00873 YP_761738.1 identified by similarity to GB:BAA24495.1; match to protein family HMM PF01431; match to protein family HMM PF05649 YP_761740.1 identified by similarity to SP:P40581; match to protein family HMM PF00255 YP_761741.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_761742.1 identified by similarity to GB:BAC50874.1 YP_761743.1 identified by similarity to PIR:D98229 YP_761744.1 identified by match to protein family HMM PF00144 YP_761745.1 identified by match to protein family HMM PF01037 YP_761746.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_761748.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_761750.1 identified by match to protein family HMM PF01381 YP_761751.1 identified by match to protein family HMM PF04324 YP_761752.1 identified by similarity to SP:P11056; match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_761753.1 identified by match to protein family HMM PF04402 YP_761754.1 identified by similarity to OMNI:NTL01AT1976 YP_761755.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_761756.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_761758.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_761760.1 identified by match to protein family HMM PF00300 YP_761761.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_761762.1 identified by match to protein family HMM PF00989; match to protein family HMM PF07536; match to protein family HMM TIGR00229 YP_761763.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_761764.1 identified by match to protein family HMM PF00892 YP_761765.1 identified by similarity to SP:P33116; match to protein family HMM PF00005 YP_761767.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_761768.1 identified by match to protein family HMM PF01047 YP_761769.1 identified by similarity to SP:P31079; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_761770.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_761771.1 identified by match to protein family HMM PF00795 YP_761772.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_761774.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR02247 YP_761775.1 identified by match to protein family HMM PF00106 YP_761777.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_761778.1 identified by match to protein family HMM PF00912; match to protein family HMM TIGR02070 YP_761779.1 identified by match to protein family HMM PF00037 YP_761780.1 identified by match to protein family HMM PF00043 YP_761781.1 identified by match to protein family HMM PF05088 YP_761782.1 identified by match to protein family HMM PF01594 YP_761783.1 identified by similarity to GB:CAC45536.1; match to protein family HMM PF05872 YP_761785.1 identified by match to protein family HMM PF00171 YP_761786.1 identified by match to protein family HMM PF02798 YP_761787.1 identified by similarity to GB:AAK22112.1 YP_761788.1 identified by match to protein family HMM PF00028 YP_761789.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_761790.1 identified by match to protein family HMM TIGR00768 YP_761791.1 identified by match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641 YP_761793.1 identified by match to protein family HMM PF01063 YP_761794.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR01751 YP_761795.1 identified by similarity to GB:CAH37602.1 YP_761796.1 identified by similarity to GB:AAP09809.1 YP_761797.1 identified by match to protein family HMM PF01047 YP_761800.1 identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184 YP_761801.1 identified by similarity to GB:AAK25066.1 YP_761802.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_761803.1 identified by similarity to SP:P19650; match to protein family HMM PF00583 YP_761804.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_761805.1 identified by similarity to GB:BAB50416.1; match to protein family HMM PF07947 YP_761806.1 identified by match to protein family HMM PF06803 YP_761807.1 identified by match to protein family HMM PF00106 YP_761808.1 identified by match to protein family HMM PF00881 YP_761809.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_761810.1 identified by match to protein family HMM PF01575 YP_761811.1 identified by similarity to GB:AAL94753.1 YP_761812.1 identified by match to protein family HMM PF00487 YP_761814.1 identified by similarity to GB:AAD43134.1; match to protein family HMM PF04055; match to protein family HMM TIGR00238 YP_761815.1 identified by match to protein family HMM PF00152 YP_761816.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_761817.1 identified by similarity to GB:BAC45363.1 YP_761818.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_761819.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_761821.1 identified by match to protein family HMM PF00089 YP_761823.1 identified by match to protein family HMM PF01019 YP_761824.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_761825.1 identified by match to protein family HMM PF00581 YP_761826.1 identified by similarity to SP:Q44532; match to protein family HMM PF00970; match to protein family HMM PF08021 YP_761827.1 identified by match to protein family HMM PF00520 YP_761828.1 identified by match to protein family HMM PF00561 YP_761830.1 identified by similarity to SP:P36655 YP_761831.1 identified by match to protein family HMM PF07277 YP_761832.1 identified by similarity to GB:AAK23989.1; match to protein family HMM PF05960 YP_761835.1 identified by similarity to GB:AAK25626.1 YP_761836.1 identified by match to protein family HMM TIGR02396 YP_761837.1 identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030 YP_761839.1 identified by similarity to GB:AAK25260.1 YP_761840.1 identified by similarity to GB:AAC36155.1; match to protein family HMM PF00005 YP_761842.1 identified by similarity to GB:AAK25268.1 YP_761843.1 identified by match to protein family HMM PF06676 YP_761844.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_761845.1 identified by match to protein family HMM PF00156 YP_761846.1 identified by similarity to GB:AAK22816.1; match to protein family HMM PF05401 YP_761847.1 identified by match to protein family HMM PF04964 YP_761848.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586 YP_761849.1 identified by similarity to SP:P38434; match to protein family HMM PF01960; match to protein family HMM TIGR00120 YP_761850.1 identified by match to protein family HMM PF00639 YP_761851.1 identified by similarity to SP:P10408; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963 YP_761853.1 identified by similarity to GB:BAC50594.1; match to protein family HMM PF00892 YP_761854.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_761855.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_761856.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis YP_761857.1 identified by similarity to GB:BAB53320.1 YP_761858.1 identified by similarity to SP:P42878; match to protein family HMM PF06906 YP_761859.1 identified by similarity to GB:AAQ58256.1 YP_761860.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_761861.1 identified by similarity to GB:CAE29794.1 YP_761862.1 identified by similarity to SP:P22783; match to protein family HMM PF00459 YP_761863.1 identified by similarity to GB:BAC51207.1; match to protein family HMM PF00743 YP_761865.1 identified by match to protein family HMM PF00665 YP_761867.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_761868.1 identified by match to protein family HMM TIGR00105 YP_761869.1 identified by similarity to GB:AAF04376.1; match to protein family HMM PF00535 YP_761870.1 identified by match to protein family HMM PF04932 YP_761871.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_761872.1 identified by similarity to SP:Q89IV9; match to protein family HMM PF01809 YP_761873.1 identified by similarity to GB:BAC50788.1 YP_761874.1 identified by similarity to SP:Q52923; match to protein family HMM PF06055 YP_761875.1 identified by match to protein family HMM PF00300 YP_761876.1 identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435 YP_761878.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_761879.1 identified by similarity to SP:Q9ASR4 YP_761880.1 identified by match to protein family HMM PF01063 YP_761881.1 identified by similarity to GB:BAB48463.1 YP_761882.1 identified by similarity to GB:AAF79926.1; match to protein family HMM PF00293 YP_761883.1 identified by similarity to GB:BAC45700.1; match to protein family HMM PF04748 YP_761884.1 identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_761885.1 identified by match to protein family HMM PF01551 YP_761888.1 identified by similarity to GB:AAK24731.1 YP_761890.1 identified by match to protein family HMM PF00583 YP_761892.1 identified by match to protein family HMM PF03992 YP_761893.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_761894.1 identified by similarity to SP:Q9A2A3 YP_761895.1 identified by similarity to GB:BAB48836.1 YP_761896.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_761897.1 identified by similarity to SP:Q52923; match to protein family HMM PF06055 YP_761898.1 identified by similarity to GB:AAK24167.1 YP_761899.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_761900.1 identified by match to protein family HMM PF05960 YP_761901.1 identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212 YP_761902.1 identified by match to protein family HMM PF02602 YP_761904.1 identified by match to protein family HMM PF07219 YP_761905.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_761906.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_761907.1 identified by match to protein family HMM TIGR00097 YP_761908.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875 YP_761909.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF02737; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_761910.1 identified by match to protein family HMM PF02798 YP_761911.1 identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_761912.1 identified by match to protein family HMM PF01617 YP_761913.1 identified by match to protein family HMM PF00117 YP_761914.1 identified by similarity to GB:BAB70471.1; match to protein family HMM PF00005 YP_761915.1 identified by similarity to GB:AAK23040.1; match to protein family HMM PF05960 YP_761916.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970 YP_761917.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02968 YP_761918.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_761919.1 identified by similarity to GB:AAR02143.1 YP_761920.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_761921.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_761924.1 identified by similarity to GB:BAC47510.1 YP_761926.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882 YP_761927.1 identified by similarity to SP:Q98EP2; match to protein family HMM PF02594 YP_761928.1 identified by similarity to GB:CAE25859.1; match to protein family HMM PF02325 YP_761929.1 identified by match to protein family HMM PF07690 YP_761930.1 identified by match to protein family HMM PF07690 YP_761932.1 identified by similarity to SP:P50198; match to protein family HMM PF00106 YP_761935.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_761936.1 identified by match to protein family HMM PF00583 YP_761937.1 identified by similarity to GB:AAS82622.1 YP_761938.1 identified by similarity to GB:AAN56986.1 YP_761940.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 YP_761941.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_761943.1 identified by similarity to GB:AAM36436.1; match to protein family HMM PF04828 YP_761944.1 identified by match to protein family HMM PF03109; match to protein family HMM TIGR01982 YP_761946.1 identified by similarity to SP:P27851; match to protein family HMM PF01170; match to protein family HMM PF01209; match to protein family HMM TIGR01934 YP_761947.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_761948.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_761950.1 identified by similarity to GB:AAG61032.1; match to protein family HMM PF00441; match to protein family HMM PF08028 YP_761951.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_761952.1 identified by similarity to GB:CAC45584.1 YP_761954.1 identified by match to protein family HMM PF01553 YP_761955.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_761956.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_761957.1 identified by match to protein family HMM PF00378 YP_761958.1 identified by similarity to SP:Q52923; match to protein family HMM PF06055 YP_761959.1 identified by similarity to GB:BAC46552.1 YP_761960.1 identified by similarity to GB:AAF98273.1; match to protein family HMM PF00478; match to protein family HMM PF03060 YP_761961.1 identified by similarity to SP:P24171; match to protein family HMM PF01432 YP_761962.1 identified by match to protein family HMM PF00359 YP_761963.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_761965.1 identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_761967.1 identified by similarity to SP:P23853; match to protein family HMM PF04012; match to protein family HMM TIGR02977 YP_761969.1 identified by similarity to SP:P23855; match to protein family HMM PF04024; match to protein family HMM TIGR02978 YP_761971.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05430 YP_761972.1 identified by similarity to GB:CAC47295.1 YP_761973.1 identified by similarity to GB:AAT43525.1 YP_761974.1 identified by similarity to GB:AAM40706.1 YP_761975.1 identified by similarity to SP:Q88E79; match to protein family HMM PF05779 YP_761976.1 identified by match to protein family HMM PF01022 YP_761978.1 identified by similarity to PIR:C95983 YP_761979.1 identified by similarity to GB:BAC52018.1 YP_761980.1 identified by similarity to GB:BAB49428.1 YP_761981.1 identified by similarity to GB:CAA55226.1; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_761982.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539 YP_761983.1 identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042 YP_761985.1 identified by match to protein family HMM PF01381 YP_761986.1 identified by similarity to GB:AAG28336.1 YP_761988.1 identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 YP_761989.1 identified by match to protein family HMM PF01268 YP_761990.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_761991.1 identified by match to protein family HMM PF01025 YP_761993.1 identified by similarity to PIR:E83372 YP_761994.1 identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350 YP_761996.1 identified by similarity to SP:Q08257; match to protein family HMM PF00107 YP_761997.1 identified by match to protein family HMM PF01112 YP_761999.1 identified by match to protein family HMM PF00588 YP_762000.1 identified by similarity to SP:P40685; match to protein family HMM PF07883 YP_762001.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_762002.1 identified by similarity to PIR:AD3485 YP_762003.1 identified by match to protein family HMM PF00691 YP_762004.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_762006.1 identified by similarity to GB:CAC46553.1 YP_762007.1 identified by similarity to GB:AAO58762.1 YP_762008.1 identified by match to protein family HMM PF03960 YP_762010.1 identified by similarity to GB:AAS71203.1 YP_762011.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_762012.1 identified by similarity to GB:CAG41809.1 YP_762013.1 identified by similarity to GB:CAG20701.1 YP_762016.1 identified by match to protein family HMM PF00149 YP_762018.1 identified by similarity to GB:BAC46174.1; match to protein family HMM PF01863 YP_762020.1 identified by similarity to GB:AAF35850.1; match to protein family HMM PF01618 YP_762021.1 identified by match to protein family HMM PF07690 YP_762022.1 identified by match to protein family HMM PF01471; match to protein family HMM TIGR02283 YP_762023.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_762024.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_762025.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_762026.1 identified by match to protein family HMM PF00561 YP_762027.1 identified by similarity to GB:BAB50739.1 YP_762029.1 identified by match to protein family HMM PF00106 YP_762030.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_762032.1 identified by similarity to PIR:AE3417; match to protein family HMM PF00892 YP_762033.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_762034.1 identified by similarity to GB:BAC50417.1 YP_762036.1 identified by similarity to GB:CAC45517.1 YP_762037.1 identified by match to protein family HMM PF01047 YP_762038.1 identified by similarity to SP:P25026; match to protein family HMM PF00561 YP_762039.1 identified by similarity to GB:CAE25475.1; match to protein family HMM PF07896 YP_762040.1 putative metalloprotease YP_762041.1 identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM PF05175 YP_762042.1 identified by match to protein family HMM PF05433 YP_762043.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_762044.1 identified by match to protein family HMM PF07940 YP_762045.1 identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355 YP_762047.1 identified by similarity to GB:AAB50182.1; match to protein family HMM PF00682 YP_762048.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_762049.1 identified by match to protein family HMM PF01502 YP_762050.1 identified by match to protein family HMM PF00753 YP_762051.1 identified by match to protein family HMM PF04087 YP_762052.1 identified by similarity to GB:AAL17673.1; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_762053.1 identified by match to protein family HMM PF00106 YP_762054.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_762055.1 identified by match to protein family HMM PF00561 YP_762056.1 identified by match to protein family HMM PF04199 YP_762057.1 identified by similarity to PIR:G83164 YP_762058.1 identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_762060.1 identified by match to protein family HMM PF00903 YP_762061.1 identified by similarity to SP:P37472; match to protein family HMM PF00156 YP_762062.1 identified by match to protein family HMM TIGR02098 YP_762063.1 identified by similarity to GB:AAK20881.1; match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_762064.1 identified by match to protein family HMM PF02687 YP_762065.1 identified by match to protein family HMM PF01553 YP_762066.1 identified by match to protein family HMM PF00730 YP_762067.1 identified by match to protein family HMM PF01844 YP_762068.1 identified by match to protein family HMM PF02366 YP_762069.1 identified by match to protein family HMM PF00535 YP_762070.1 identified by similarity to SP:Q52720; match to protein family HMM PF02630 YP_762071.1 identified by similarity to GB:AAF01775.3; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_762072.1 identified by match to protein family HMM PF00072; match to protein family HMM TIGR01199 YP_762073.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02153; match to protein family HMM PF03446; match to protein family HMM PF03807 YP_762075.1 identified by similarity to GB:AAK22457.1 YP_762076.1 identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848 YP_762077.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01829 YP_762078.1 identified by similarity to GB:AAK22505.1; match to protein family HMM PF06172 YP_762079.1 identified by similarity to SP:O24496; match to protein family HMM PF00753 YP_762080.1 identified by similarity to GB:AAN30876.1 YP_762081.1 identified by match to protein family HMM PF00543 YP_762082.1 identified by match to protein family HMM PF01551 YP_762085.1 identified by match to protein family HMM PF00082 YP_762086.1 identified by similarity to GB:AAK22107.1; match to protein family HMM PF01980 YP_762087.1 identified by match to protein family HMM PF00805 YP_762088.1 identified by similarity to GB:CAA90562.1; match to protein family HMM PF00271 YP_762089.1 identified by match to protein family HMM PF01479 YP_762090.1 identified by match to protein family HMM PF07049 YP_762091.1 identified by similarity to GB:AAA85787.1; match to protein family HMM PF00037 YP_762092.1 identified by match to protein family HMM PF02559 YP_762094.1 identified by similarity to GB:BAC48320.1; match to protein family HMM PF04828 YP_762097.1 identified by match to protein family HMM PF00561 YP_762098.1 identified by match to protein family HMM PF00903 YP_762099.1 identified by similarity to SP:P22538; match to protein family HMM PF00376; match to protein family HMM TIGR01950 YP_762100.1 identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501 YP_762101.1 identified by similarity to GB:AAS43651.1 YP_762102.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_762103.1 identified by match to protein family HMM PF01467 YP_762104.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_762105.1 identified by match to protein family HMM PF00561 YP_762106.1 identified by similarity to SP:Q9C4M5; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_762107.1 identified by similarity to GB:BAB51997.1; match to protein family HMM PF06347 YP_762108.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_762109.1 identified by match to protein family HMM PF00106 YP_762110.1 identified by similarity to PIR:AI2738 YP_762111.1 identified by similarity to GB:AAQ60449.1; match to protein family HMM PF04828 YP_762112.1 identified by match to protein family HMM PF00188 YP_762113.1 identified by similarity to SP:O32033; match to protein family HMM PF00485; match to protein family HMM TIGR00235 YP_762114.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_762115.1 identified by similarity to SP:P05766; match to protein family HMM PF00312; match to protein family HMM TIGR00952 YP_762118.1 identified by similarity to GB:AAR33584.1 YP_762119.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_762120.1 identified by similarity to SP:P13254; match to protein family HMM PF01053 YP_762121.1 identified by match to protein family HMM PF00565 YP_762122.1 identified by similarity to SP:P48194; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_762123.1 identified by similarity to GB:AAK25429.1; match to protein family HMM PF06319 YP_762125.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle YP_762126.1 identified by match to protein family HMM PF00285 YP_762127.1 identified by similarity to SP:P27302; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 YP_762128.1 identified by similarity to GB:CAE26390.1 YP_762129.1 identified by similarity to GB:BAC46791.1; match to protein family HMM PF05164 YP_762131.1 identified by similarity to PIR:C98285 YP_762132.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_762133.1 identified by match to protein family HMM PF00753 YP_762134.1 identified by similarity to GB:AAV93653.1 YP_762135.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_762137.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838 YP_762138.1 identified by similarity to SP:P43221 YP_762140.1 identified by match to protein family HMM PF00565 YP_762141.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_762142.1 identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_762143.1 identified by similarity to SP:P38975; match to protein family HMM PF01012 YP_762144.1 identified by match to protein family HMM TIGR01499 YP_762146.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262 YP_762147.1 identified by similarity to SP:P36654; match to protein family HMM PF03091 YP_762148.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_762149.1 identified by match to protein family HMM PF00697 YP_762150.1 identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_762152.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_762153.1 identified by similarity to PIR:AF3578; match to protein family HMM PF00892 YP_762154.1 identified by match to protein family HMM PF00245 YP_762156.1 identified by match to protein family HMM PF01381 YP_762157.1 identified by similarity to GB:AAK24991.1; match to protein family HMM PF00107 YP_762159.1 identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036 YP_762160.1 identified by match to protein family HMM PF06108 YP_762162.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_762164.1 identified by similarity to SP:P29934; match to protein family HMM PF06213; match to protein family HMM TIGR01651 YP_762165.1 identified by similarity to SP:P29933; match to protein family HMM TIGR01650 YP_762167.1 identified by similarity to SP:Q93P63; match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_762168.1 identified by match to protein family HMM PF07969 YP_762169.1 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009 YP_762170.1 identified by similarity to GB:BAB50418.1 YP_762171.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_762172.1 identified by match to protein family HMM PF00245; match to protein family HMM TIGR01409 YP_762174.1 identified by similarity to GB:AAK25253.1; match to protein family HMM PF04325 YP_762175.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_762177.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_762178.1 identified by match to protein family HMM PF02222; match to protein family HMM TIGR01161 YP_762179.1 identified by match to protein family HMM PF02633 YP_762180.1 identified by match to protein family HMM PF00005 YP_762181.1 identified by similarity to GB:AAU92171.1 YP_762182.1 identified by similarity to PIR:A83188 YP_762184.1 identified by similarity to GB:BAB51019.1 YP_762185.1 Catalyzes the conversion of citrate to isocitrate YP_762186.1 identified by similarity to SP:P33931; match to protein family HMM PF00005; match to protein family HMM TIGR01189 YP_762187.1 identified by match to protein family HMM PF03379 YP_762188.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191 YP_762190.1 identified by similarity to SP:P33926 YP_762191.1 identified by match to protein family HMM PF01047 YP_762192.1 identified by match to protein family HMM PF00293 YP_762194.1 identified by match to protein family HMM PF00892 YP_762195.1 identified by similarity to GB:BAB51678.1 YP_762196.1 identified by match to protein family HMM PF07908; match to protein family HMM PF07969 YP_762197.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_762198.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_762200.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_762202.1 identified by match to protein family HMM PF01575 YP_762204.1 identified by match to protein family HMM PF03960 YP_762205.1 identified by similarity to SP:P77770; match to protein family HMM PF03328; match to protein family HMM TIGR01588 YP_762206.1 identified by match to protein family HMM PF00583 YP_762207.1 identified by similarity to PIR:A44832; match to protein family HMM PF00144 YP_762208.1 identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_762209.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_762210.1 identified by match to protein family HMM PF00685 YP_762211.1 identified by match to protein family HMM PF00248 YP_762212.1 identified by match to protein family HMM PF01580 YP_762213.1 identified by match to protein family HMM PF00909 YP_762214.1 identified by similarity to SP:P75728; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_762215.1 identified by similarity to GB:CAD85056.1; match to protein family HMM PF06155 YP_762216.1 identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966 YP_762217.1 identified by match to protein family HMM PF02190 YP_762218.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_762219.1 identified by match to protein family HMM PF03548 YP_762220.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633 YP_762221.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_762222.1 identified by similarity to GB:AAK25706.1 YP_762223.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_762224.1 identified by match to protein family HMM PF02581 YP_762225.1 identified by similarity to GB:AAK25709.1 YP_762228.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_762229.1 identified by similarity to GB:AAK25712.1 YP_762230.1 identified by match to protein family HMM TIGR01128 YP_762231.1 identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_762232.1 identified by similarity to SP:O05189; match to protein family HMM PF01656 YP_762233.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138 YP_762234.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_762235.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 YP_762236.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_762237.1 identified by match to protein family HMM PF03653 YP_762238.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_762239.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III