-- dump date   	20140619_121646
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
573000001	Integrase core domain; Region: rve; pfam00665
573000002	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
573000003	transposase/IS protein; Provisional; Region: PRK09183
573000004	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
573000005	Walker A motif; other site
573000006	ATP binding site [chemical binding]; other site
573000007	Walker B motif; other site
573000008	arginine finger; other site
573000009	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3464
573000010	Transposase; Region: DDE_Tnp_ISL3; pfam01610
573000011	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
573000012	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
573000013	nickel ABC transporter, permease subunit NikC; Region: nickel_nikC; TIGR02790
573000014	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
573000015	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
573000016	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_3; cd08490
573000017	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
573000018	Major Facilitator Superfamily; Region: MFS_1; pfam07690
573000019	putative substrate translocation pore; other site
573000020	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
573000021	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
573000022	Walker A/P-loop; other site
573000023	ATP binding site [chemical binding]; other site
573000024	Q-loop/lid; other site
573000025	ABC transporter signature motif; other site
573000026	Walker B; other site
573000027	D-loop; other site
573000028	H-loop/switch region; other site
573000029	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
573000030	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
573000031	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
573000032	Walker A/P-loop; other site
573000033	ATP binding site [chemical binding]; other site
573000034	Q-loop/lid; other site
573000035	ABC transporter signature motif; other site
573000036	Walker B; other site
573000037	D-loop; other site
573000038	H-loop/switch region; other site
573000039	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
573000040	Uncharacterized conserved protein [Function unknown]; Region: COG5464
573000041	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
573000042	Uncharacterized conserved protein [Function unknown]; Region: COG5464
573000043	Protein of unknown function (DUF2913); Region: DUF2913; pfam11140
573000044	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
573000045	Putative transposase; Region: Y2_Tnp; pfam04986
573000046	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
573000047	Putative transposase; Region: Y2_Tnp; pfam04986
573000048	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1636
573000049	Domain of unknown function (DUF4158); Region: DUF4158; pfam13700
573000050	Pyruvate formate lyase; Region: PFL; pfam02901
573000051	Tn3 transposase DDE domain; Region: DDE_Tnp_Tn3; cl14901
573000052	Domain of unknown function (DUF4158); Region: DUF4158; pfam13700
573000053	Tn3 transposase DDE domain; Region: DDE_Tnp_Tn3; pfam01526
573000054	Anaphase-promoting complex, cyclosome, subunit 3; Region: Apc3; pfam12895
573000055	multiple promoter invertase; Provisional; Region: mpi; PRK13413
573000056	Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768
573000057	catalytic residues [active]
573000058	catalytic nucleophile [active]
573000059	Presynaptic Site I dimer interface [polypeptide binding]; other site
573000060	Synaptic Antiparallel dimer interface [polypeptide binding]; other site
573000061	Synaptic Flat tetramer interface [polypeptide binding]; other site
573000062	Synaptic Site I dimer interface [polypeptide binding]; other site
573000063	DNA binding site [nucleotide binding]
573000064	Helix-turn-helix domain of Hin and related proteins; Region: HTH_Hin_like; cd00569
573000065	DNA-binding interface [nucleotide binding]; DNA binding site
573000066	Domain of unknown function DUF87; Region: DUF87; cl19135
573000067	AAA-like domain; Region: AAA_10; pfam12846
573000068	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
573000069	ATP binding site [chemical binding]; other site
573000070	Walker A motif; other site
573000071	Walker B motif; other site
573000072	TraM recognition site of TraD and TraG; Region: TraG-D_C; cl17375
573000073	Replication-relaxation; Region: Replic_Relax; pfam13814
573000074	Rop protein; Region: Rop; pfam01815
573000075	Protein of unknown function, DUF480; Region: DUF480; cl01209
573000076	Plasmid stabilization system protein [General function prediction only]; Region: ParE; COG3668
573000077	hypothetical protein; Provisional; Region: PRK07064
573000078	Colicin-like bacteriocin tRNase domain; Region: Cloacin; pfam03515
573000079	Coiled-coil receptor-binding R-domain of colicin E2; Region: E2R135; pfam11570
573000080	Cytotoxic; Region: Cytotoxic; pfam09000
573000081	Cloacin immunity protein; Region: Cloacin_immun; pfam03513
573000082	Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961
573000083	Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768
573000084	catalytic residues [active]
573000085	catalytic nucleophile [active]
573000086	Presynaptic Site I dimer interface [polypeptide binding]; other site
573000087	Synaptic Antiparallel dimer interface [polypeptide binding]; other site
573000088	Synaptic Flat tetramer interface [polypeptide binding]; other site
573000089	Synaptic Site I dimer interface [polypeptide binding]; other site
573000090	DNA binding site [nucleotide binding]
573000091	Helix-turn-helix domain of Hin and related proteins; Region: HTH_Hin_like; cd00569
573000092	DNA-binding interface [nucleotide binding]; DNA binding site
573000093	Tn3 transposase DDE domain; Region: DDE_Tnp_Tn3; cl14901
573000094	Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961
573000095	Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768
573000096	Presynaptic Site I dimer interface [polypeptide binding]; other site
573000097	catalytic residues [active]
573000098	Synaptic Antiparallel dimer interface [polypeptide binding]; other site
573000099	Synaptic Flat tetramer interface [polypeptide binding]; other site
573000100	Synaptic Site I dimer interface [polypeptide binding]; other site
573000101	DNA binding site [nucleotide binding]
573000102	Helix-turn-helix domain of Hin and related proteins; Region: HTH_Hin_like; cd00569
573000103	DNA-binding interface [nucleotide binding]; DNA binding site
573000104	Putative lysophospholipase; Region: Hydrolase_4; cl19140
573000105	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
573000106	Prolyl oligopeptidase family; Region: Peptidase_S9; cl19144
573000107	EamA-like transporter family; Region: EamA; pfam00892
573000108	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
573000109	EamA-like transporter family; Region: EamA; pfam00892
573000110	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
573000111	Putative transposase; Region: Y2_Tnp; pfam04986
573000112	Uncharacterized conserved protein [Function unknown]; Region: COG5464
573000113	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
573000114	Protein of unknown function (DUF2913); Region: DUF2913; pfam11140
573000115	IncFII RepA protein family; Region: IncFII_repA; cl11495
573000116	RepA leader peptide Tap; Region: tap_IncFII_lead; TIGR03475
573000117	Replication regulatory protein RepB; Region: RepB-RCR_reg; cl11673
573000118	Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins; Region: PLDc_Nuc; cd09170
573000119	PLD-like domain; Region: PLDc_2; pfam13091
573000120	putative active site [active]
573000121	catalytic site [active]
573000122	Protein of unknown function (DUF2726); Region: DUF2726; pfam10881
573000123	conjugal transfer fertility inhibition protein FinO; Provisional; Region: PRK13754
573000124	Fertility inhibition protein N terminal; Region: FinO_N; pfam12602
573000125	putative kissing complex interaction region; other site
573000126	putative RNA binding sites [nucleotide binding]; other site
573000127	ProQ/FINO family; Region: ProQ; pfam04352
573000128	TraX protein; Region: TraX; cl05434
573000129	conjugal transfer nickase/helicase TraI; Provisional; Region: PRK13709
573000130	TrwC relaxase; Region: TrwC; cl19905
573000131	AAA domain; Region: AAA_30; pfam13604
573000132	DNA helicase TraI; Region: TraI; pfam07057
573000133	conjugal transfer protein TraD; Provisional; Region: PRK13700
573000134	F sex factor protein N terminal; Region: TraD_N; pfam12615
573000135	Bacterial conjugation protein TrwB,  ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component...; Region: TrwB; cd01127
573000136	multimer interface [polypeptide binding]; other site
573000137	Walker A motif; other site
573000138	ATP binding site [chemical binding]; other site
573000139	Walker B motif; other site
573000140	conjugal transfer surface exclusion protein TraT; Provisional; Region: PRK13731
573000141	conjugal transfer entry exclusion protein TraS; Provisional; Region: PRK13741
573000142	conjugal transfer mating pair stabilization protein TraG; Provisional; Region: PRK13735
573000143	TraG-like protein, N-terminal region; Region: TraG_N; pfam07916
573000144	conjugal transfer pilus assembly protein TraH; Provisional; Region: PRK13723
573000145	conjugal transfer protein TrbB; Provisional; Region: PRK13728
573000146	conjugal transfer pilin chaperone TraQ; Provisional; Region: PRK13727
573000147	conjugal pilus assembly protein TraF; Provisional; Region: PRK13703
573000148	conjugal transfer protein TrbE; Provisional; Region: PRK13718
573000149	conjugal transfer mating pair stabilization protein TraN; Reviewed; Region: PRK12355
573000150	Type-1V conjugative transfer system mating pair stabilisation; Region: TraN; cl19475
573000151	conjugal transfer pilus assembly protein TrbC; Provisional; Region: PRK13730
573000152	conjugal transfer pilus assembly protein TraU; Provisional; Region: PRK13737
573000153	conjugal transfer pilus assembly protein TraW; Provisional; Region: PRK13738
573000154	Type-F conjugative transfer system protein (TrbI_Ftype); Region: TrbI_Ftype; pfam09677
573000155	conjugal transfer ATP-binding protein TraC; Provisional; Region: PRK13721
573000156	F pilus assembly Type-IV secretion system for plasmid transfer; Region: TraC_F_IV; pfam11130
573000157	conjugal transfer protein TraV; Provisional; Region: PRK13733
573000158	conjugal transfer pilus assembly protein TraB; Provisional; Region: PRK13729
573000159	conjugal transfer pilus assembly protein TraB; Provisional; Region: PRK13729
573000160	Bacterial conjugation TrbI-like protein; Region: TrbI; cl04242
573000161	conjugal transfer protein TraK; Provisional; Region: PRK13736
573000162	conjugal transfer pilus assembly protein TraE; Provisional; Region: PRK13726
573000163	conjugal transfer pilus assembly protein TraL; Provisional; Region: PRK13707
573000164	conjugal transfer pilin subunit TraA; Provisional; Region: PRK13734
573000165	TraY domain; Region: TraY; pfam05509
573000166	conjugal transfer transcriptional regulator TraJ; Provisional; Region: PRK13719
573000167	conjugal transfer protein TraM; Provisional; Region: PRK13713
573000168	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
573000169	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
573000170	N-acetyl-D-glucosamine binding site [chemical binding]; other site
573000171	catalytic residue [active]
573000172	Antirestriction protein; Region: Antirestrict; pfam03230
573000173	N-6 DNA Methylase; Region: N6_Mtase; pfam02384
573000174	Predicted transcription regulator containing HTH domain [Transcription]; Region: COG5499
573000175	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
573000176	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
573000177	non-specific DNA binding site [nucleotide binding]; other site
573000178	salt bridge; other site
573000179	sequence-specific DNA binding site [nucleotide binding]; other site
573000180	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
573000181	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
573000182	non-specific DNA binding site [nucleotide binding]; other site
573000183	salt bridge; other site
573000184	sequence-specific DNA binding site [nucleotide binding]; other site
573000185	Phage derived protein Gp49-like (DUF891); Region: Gp49; pfam05973
573000186	small toxic polypeptide; Provisional; Region: PRK09738
573000187	PsiA protein; Region: PsiA; pfam06952
573000188	Plasmid SOS inhibition protein (PsiB); Region: PsiB; pfam06290
573000189	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
573000190	ParB-like nuclease domain; Region: ParBc; pfam02195
573000191	Bacterial protein of unknown function (DUF905); Region: DUF905; pfam06006
573000192	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
573000193	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
573000194	dimer interface [polypeptide binding]; other site
573000195	ssDNA binding site [nucleotide binding]; other site
573000196	tetramer (dimer of dimers) interface [polypeptide binding]; other site
573000197	DNA polymerase III, theta subunit; Region: DNA_pol3_theta; cl11635
573000198	Antirestriction protein (ArdA); Region: ArdA; pfam07275
573000199	Antirestriction protein; Region: Antirestrict; pfam03230
573000200	Protein of unknown function (DUF1380); Region: DUF1380; pfam07128
573000201	Protein of unknown function (DUF1380); Region: DUF1380; pfam07128
573000202	putative methylase; Provisional; Region: PRK13699
573000203	zinc-finger of transposase IS204/IS1001/IS1096/IS1165; Region: zf-ISL3; pfam14690
573000204	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3464
573000205	Helix-turn-helix domain of transposase family ISL3; Region: HTH_Tnp_ISL3; pfam13542
573000206	Transposase; Region: DDE_Tnp_ISL3; pfam01610
573000207	DinI-like family; Region: DinI; cl11630
573000208	SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]; Region: LexA; COG1974
573000209	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
573000210	Catalytic site [active]
573000211	DNA polymerase V subunit UmuC; Reviewed; Region: umuC; PRK03609
573000212	umuC subunit of DNA Polymerase V; Region: PolY_Pol_V_umuC; cd01700
573000213	active site
573000214	DNA binding site [nucleotide binding]
573000215	Domain of unknown function (DUF4113); Region: DUF4113; pfam13438
573000216	ParA-like protein; Provisional; Region: PHA02518
573000217	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
573000218	VirC1 protein; Region: VirC1; cl17401
573000219	P-loop; other site
573000220	Magnesium ion binding site [ion binding]; other site
573000221	Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768
573000222	multiple promoter invertase; Provisional; Region: mpi; PRK13413
573000223	catalytic residues [active]
573000224	catalytic nucleophile [active]
573000225	Presynaptic Site I dimer interface [polypeptide binding]; other site
573000226	Synaptic Antiparallel dimer interface [polypeptide binding]; other site
573000227	Synaptic Flat tetramer interface [polypeptide binding]; other site
573000228	Synaptic Site I dimer interface [polypeptide binding]; other site
573000229	DNA binding site [nucleotide binding]
573000230	Helix-turn-helix domain of Hin and related proteins; Region: HTH_Hin_like; cl17393
573000231	DNA-binding interface [nucleotide binding]; DNA binding site
573000232	Uncharacterized conserved protein [Function unknown]; Region: COG5464
573000233	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
573000234	Essential protein Yae1, N terminal; Region: Yae1_N; pfam09811
573000235	Protein of unknown function (DUF2913); Region: DUF2913; pfam11140
573000236	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
573000237	insertion element IS2 transposase InsD; Provisional; Region: PRK14702
573000238	HTH-like domain; Region: HTH_21; pfam13276
573000239	Integrase core domain; Region: rve; pfam00665
573000240	Integrase core domain; Region: rve_3; pfam13683
573000241	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
573000242	Transposase; Region: HTH_Tnp_1; cl17663
573000243	BCCT family transporter; Region: BCCT; cl00569
573000244	zinc-finger of transposase IS204/IS1001/IS1096/IS1165; Region: zf-ISL3; pfam14690
573000245	Highly similar to putative cell wall-associated hydrolase of Haemophilus haemolyticus; about 26 amino-acids are probably missing on N-terminal part
573000246	C-terminal part of transposase, TnpA family
573000247	Highly similar to 3-oxoacyl-[acyl-carrier-protein] synthase II from Escherichia coli O6:K15:H31 strain 536 - UPEC (tr|Q0TIX9); N-terminal part possibly missing
573000248	highly similar to protein SirB1 from Salmonella typhimurium (sp|P0A2L9)
573000249	Similar to repressor protein CI from Enterobacteria phage phi80 (sp|P14819)
573000250	Peptidoglycan-associated lipoprotein; N-terminal part missing