-- dump date 20140619_121902 -- class Genbank::CDS -- table cds_note -- id note YP_002939734.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002939735.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: gbm:Gbem_0008 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_002939736.1 KEGG: aeh:Mlg_0033 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; Methyltransferase type 11 YP_002939737.1 KEGG: mxa:MXAN_5070 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_002939739.1 catalyzes branch migration in Holliday junction intermediates YP_002939740.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase ; RNA methylase; KEGG: sat:SYN_00910 adenine-specific methyltransferase YP_002939741.1 PFAM: protein of unknown function DUF82; KEGG: mxa:MXAN_0365 hypothetical protein YP_002939742.1 KEGG: sus:Acid_1646 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein YP_002939743.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: geo:Geob_1006 response regulator receiver protein YP_002939744.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002939745.1 PFAM: polysaccharide export protein; KEGG: ppr:PBPRA0349 periplasmic protein involved in polysaccharide export YP_002939746.1 KEGG: sun:SUN_1558 capsular polysaccharide biosynthesis protein YP_002939747.1 KEGG: pca:Pcar_1464 uncharacterized exopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_002939748.1 PFAM: zinc/iron permease; KEGG: mca:MCA2417 ZIP zinc transporter family protein YP_002939749.1 PFAM: O-antigen polymerase; KEGG: dat:HRM2_25580 O-antigen polymerase involved in exopolysaccharide biosynthesis YP_002939750.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; Cysteinyl-tRNA synthetase class Ia; KEGG: bsu:BSU00380 methionyl-tRNA synthetase YP_002939751.1 KEGG: nam:NAMH_0664 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_002939752.1 KEGG: glo:Glov_1232 transcriptional repressor, LexA family; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_002939753.1 KEGG: afw:Anae109_2734 ribose 5-phosphate isomerase B; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase YP_002939754.1 PFAM: histone deacetylase superfamily; KEGG: dat:HRM2_13220 histone deacetylase superfamily protein YP_002939755.1 PFAM: surface antigen variable number repeat protein; surface antigen (D15); KEGG: tcx:Tcr_1278 surface antigen (D15) YP_002939756.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_16530 sensory signal transduction histidine kinase (ATPase domain protein) YP_002939757.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dat:HRM2_16540 metal-dependent phosphoesterase (PHP family protein) YP_002939758.1 KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase YP_002939759.1 PFAM: CBS domain containing protein; ATP-binding region ATPase domain protein; SMART: CBS domain containing protein; KEGG: dat:HRM2_16560 RsbW2 YP_002939760.1 KEGG: dat:HRM2_16570 hypothetical protein YP_002939761.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_002939762.1 KEGG: hypothetical protein YP_002939763.1 KEGG: aba:Acid345_0569 mannose-6-phosphate isomerase YP_002939764.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_002939765.1 PFAM: 8-oxoguanine DNA glycosylase domain protein; SMART: HhH-GPD family protein; KEGG: OGG1; 8-oxoguanine DNA glycosylase ; K03660 N-glycosylase/DNA lyase YP_002939767.1 PFAM: protein of unknown function DUF208; KEGG: nis:NIS_0539 hypothetical protein YP_002939768.1 KEGG: EEPD1; endonuclease/exonuclease/phosphatase family domain containing 1; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1 YP_002939770.1 PFAM: 3-dehydroquinate synthase; KEGG: dat:HRM2_06080 AroB1 YP_002939771.1 PFAM: peptidase M42 family protein; peptidase M18 aminopeptidase I; peptidase M20; KEGG: bsu:BSU28820 hypothetical protein YP_002939772.1 PFAM: peptidase M42 family protein; KEGG: bha:BH3132 endo-1,4-beta-glucanase YP_002939773.1 PFAM: peptidase M42 family protein; peptidase M18 aminopeptidase I; peptidase M20; KEGG: bha:BH3132 endo-1,4-beta-glucanase YP_002939774.1 blocks the formation of polar Z-ring septums YP_002939775.1 PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; KEGG: bha:BH1216 transcriptional regulator YP_002939776.1 PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: abm:ABSDF0216 MFS family transporter YP_002939777.1 KEGG: sat:SYN_00663 cytoplasmic protein YP_002939778.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_002939779.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002939780.1 KEGG: bsu:BSU01770 hypothetical protein; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_002939781.1 KEGG: bsu:BSU00420 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase YP_002939782.1 KEGG: bsu:BSU24100 transcriptional regulator (sigma-L-dependent); TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; PAS domain containing protein YP_002939783.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: shl:Shal_2747 short-chain dehydrogenase/reductase SDR YP_002939785.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_002939786.1 KEGG: eck:EC55989_2911 hypothetical protein YP_002939787.1 KEGG: Rap/Ran GTPase-activating protein YP_002939788.1 PFAM: protein of unknown function DUF262; KEGG: see:SNSL254_A4878 hypothetical protein YP_002939789.1 KEGG: acp:A2cp1_4010 restriction endonuclease-like protein YP_002939790.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: atc:AGR_L_50 hypothetical protein YP_002939791.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_2875 integrase catalytic subunit YP_002939793.1 KEGG: rfe:RF_1071 transposase YP_002939794.1 KEGG: eta:ETA_pET090040 DNA restriction subunit type III restriction and modification system; PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase YP_002939795.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: hip:CGSHiEE_06790 type III restriction/modification system modification methylase YP_002939796.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: vvy:VV2209 hypothetical protein YP_002939797.1 KEGG: eta:ETA_pET090030 DNA recognition and methylase subunit Mod YP_002939798.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bha:BH3999 transposase (26) YP_002939799.1 KEGG: bha:BH3998 transposase (25) YP_002939800.1 KEGG: cje:Cj1602 conserved hypothetical protein Cj1602 YP_002939802.1 SMART: AAA ATPase; KEGG: sat:SYN_01506 ATPase YP_002939803.1 PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5508 ISPsy8, transposase OrfA YP_002939805.1 KEGG: abu:Abu_1480 hypothetical protein YP_002939806.1 SMART: AAA ATPase; KEGG: sat:SYN_01506 ATPase YP_002939810.1 KEGG: AGAP004514-PA YP_002939811.1 SMART: AAA ATPase; KEGG: cbd:CBUD_1375 hypothetical ATPase YP_002939812.1 PFAM: protein of unknown function DUF534; KEGG: hch:HCH_04501 ABC-type uncharacterized transport system, periplasmic component YP_002939813.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_C_4842 probable ABC transporter, permease protein YP_002939814.1 PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_C1111 ABC transporter, ATPase subunit YP_002939815.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: atc:AGR_C_418 hypothetical protein YP_002939816.1 SMART: helix-turn-helix domain protein YP_002939817.1 PFAM: aminotransferase class IV; KEGG: tgr:Tgr7_2706 D-amino-acid transaminase YP_002939818.1 KEGG: ppr:PBPRB1691 hypothetical protein YP_002939819.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: afw:Anae109_3653 phosphodiesterase YP_002939820.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: afw:Anae109_1544 plasmid pRiA4b ORF-3 family protein YP_002939822.1 PFAM: cyclase family protein; KEGG: baa:BA_0933 hypothetical protein YP_002939823.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin YP_002939824.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002939825.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: fph:Fphi_0553 argininosuccinate lyase YP_002939826.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002939827.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002939828.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002939829.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002939830.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sse:Ssed_3778 response regulator YP_002939831.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin YP_002939832.1 PFAM: transposase mutator type; KEGG: sun:SUN_2453 transposase YP_002939833.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin YP_002939834.1 PFAM: aminotransferase class-III; KEGG: hdu:HD0892 acetylornithine aminotransferase YP_002939835.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002939836.1 PFAM: Tetrahydrodipicolinate succinyltransferase domain protein; transferase hexapeptide repeat containing protein; KEGG: bha:BH2669 tetrahydrodipicolinate succinylase YP_002939837.1 KEGG: zmo:ZMO0707 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_002939838.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: sat:SYN_02161 dihydrodipicolinate synthase YP_002939839.1 KEGG: dps:DP0433 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_002939840.1 KEGG: sfu:Sfum_3032 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_002939841.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: amc:MADE_03487 cold shock-like protein CspG YP_002939842.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppd:Ppro_2725 PAS/PAC sensor signal transduction histidine kinase YP_002939843.1 KEGG: dal:Dalk_4664 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; Metal-dependent hydrolase HDOD; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_002939844.1 KEGG: rru:Rru_A3210 DNA methylase N-4/N-6 YP_002939845.1 PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_4140 transposase IS3/IS911 YP_002939846.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pub:SAR11_0109 site-specific DNA methyltransferase YP_002939847.1 KEGG: neu:NE1602 general secretion pathway protein G YP_002939848.1 KEGG: cja:CJA_2729 pilin YP_002939849.1 PFAM: protein of unknown function DUF202 YP_002939850.1 PFAM: amino acid permease-associated region; Spore germination protein; KEGG: nis:NIS_0790 amino acid transporter YP_002939851.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: gbm:Gbem_1976 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_002939853.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_0186 extracellular solute-binding protein YP_002939854.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_20380 GlnP5 YP_002939855.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3901 ABC transporter related YP_002939856.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_14040 GlnP2 YP_002939857.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_002939858.1 PFAM: regulatory protein TetR; KEGG: bar:GBAA2479 TetR family transcriptional regulator YP_002939861.1 PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA4216 EmrB/QacA family drug resistance transporter YP_002939862.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; KEGG: dal:Dalk_2078 TrkA-N domain protein YP_002939863.1 PFAM: UvrD/REP helicase; KEGG: sat:SYN_02537 UvrD/rep helicase YP_002939864.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_002939865.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sus:Acid_0157 PAS/PAC sensor hybrid histidine kinase YP_002939866.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: bsu:BSU21610 hypothetical protein YP_002939868.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: bxe:Bxe_B2763 transposase IS110 YP_002939869.1 PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; KEGG: fph:Fphi_0656 endonuclease YP_002939870.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: ppr:PBPRB0807 maturase YP_002939873.1 KEGG: swi:Swit_4521 membrane-like protein YP_002939874.1 PFAM: Ferritin Dps family protein; KEGG: gbm:Gbem_2519 ferritin Dps family protein YP_002939875.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; KEGG: noc:Noc_0982 geranylgeranyl reductase YP_002939876.1 PFAM: aminotransferase class I and II; KEGG: ypg:YpAngola_A2760 aminotransferase, classes I and II YP_002939877.1 PFAM: ABC-3 protein; transport system permease protein; KEGG: bha:BH1390 hypothetical protein YP_002939878.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: baa:BA_4953 cation ABC transporter, ATP-binding protein YP_002939879.1 PFAM: periplasmic solute binding protein; KEGG: pap:PSPA7_2852 adhesion protein YP_002939880.1 PFAM: ferric-uptake regulator; KEGG: cjd:JJD26997_1557 ferric uptake regulation protein YP_002939881.1 KEGG: baa:BA_3885 ABC-2 type transport system permease protein YP_002939882.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bar:GBAA3387 ABC transporter ATP-binding protein YP_002939883.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_3750 ABC transporter related YP_002939884.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bsu:BSU30460 hypothetical protein YP_002939886.1 PFAM: DNA polymerase beta domain protein region; KEGG: hypothetical protein YP_002939887.1 PFAM: protein of unknown function DUF1667; KEGG: sat:SYN_02448 zinc finger protein YP_002939888.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sat:SYN_02447 pyridine nucleotide-disulphide oxidoreductase family protein YP_002939889.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: NAD(FAD)-dependent dehydrogenase YP_002939890.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: set:SEN1438 regulatory protein YP_002939891.1 PFAM: photosystem I assembly BtpA; KEGG: jan:Jann_2112 photosystem I assembly BtpA YP_002939892.1 PFAM: carbohydrate kinase FGGY; KEGG: rru:Rru_A1267 carbohydrate kinase, FGGY YP_002939893.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: ara:Arad_9891 short chain dehydrogenase protein YP_002939894.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1263 binding-protein dependent transport system inner membrane protein YP_002939895.1 PFAM: extracellular solute-binding protein family 1; KEGG: rru:Rru_A1262 extracellular solute-binding protein YP_002939896.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1261 binding-protein dependent transport system inner membrane protein YP_002939897.1 PFAM: inositol monophosphatase; KEGG: mgm:Mmc1_0078 inositol-phosphate phosphatase YP_002939898.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: baa:BA_1143 dihydroorotate dehydrogenase YP_002939899.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: hypothetical protein YP_002939900.1 KEGG: afw:Anae109_1868 hypothetical protein YP_002939901.1 PFAM: sugar transferase; KEGG: azo:azo3193 glycosyltransferase YP_002939902.1 TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0844 hydrogenases, Fe-only YP_002939903.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: bsu:BSU30320 leucyl-tRNA synthetase YP_002939904.1 PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4111 transporter YP_002939905.1 PFAM: extracellular solute-binding protein family 1; KEGG: kpe:KPK_4987 ABC transporter, periplasmic substrate-binding protein YP_002939906.1 KEGG: sat:SYN_02876 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_002939908.1 catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate YP_002939909.1 KEGG: sus:Acid_7098 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_002939910.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: pca:Pcar_1846 NADP-reducing hydrogenase chain A YP_002939911.1 KEGG: dat:HRM2_16520 NADP-reducing hydrogenase, subunit B YP_002939912.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_16600 NuoF YP_002939913.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: pca:Pcar_0833 NADH:ubiquinone oxidoreductase 24 kD subunit YP_002939914.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dat:HRM2_16600 NuoF YP_002939915.1 KEGG: bap:BUAP5A_259 membrane-bound lytic murein transglycosylase E YP_002939916.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: vpa:VP2077 maltodextrin glucosidase YP_002939917.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bsu:BSU02210 hypothetical protein YP_002939918.1 KEGG: glo:Glov_2047 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_002939919.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: bha:BH2487 chromosome segregation SMC protein YP_002939920.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dal:Dalk_4810 radical SAM domain protein YP_002939922.1 PFAM: LVIVD repeat protein; KEGG: dal:Dalk_1645 LVIVD repeat protein YP_002939925.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dol:Dole_0130 cytochrome c biogenesis protein transmembrane region YP_002939926.1 KEGG: dat:HRM2_42220 thioredoxin YP_002939927.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: hypothetical protein YP_002939928.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: Appr-1-p processing enzyme family protein YP_002939929.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sfu:Sfum_0727 ammonium transporter YP_002939930.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_0939 recombination factor protein RarA YP_002939931.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: mxa:MXAN_3507 UDP-glucose 4-epimerase YP_002939932.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: sat:SYN_02178 uracil DNA glycosylase superfamily protein YP_002939933.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dvl:Dvul_1425 permease YjgP/YjgQ family protein YP_002939934.1 PFAM: PhoU family protein; KEGG: glo:Glov_0622 phosphate uptake regulator, PhoU YP_002939935.1 PFAM: ATP-NAD/AcoX kinase; KEGG: tdn:Suden_1085 NAD(+) kinase YP_002939936.1 PFAM: protein of unknown function YGGT; KEGG: gur:Gura_1165 protein of unknown function YGGT YP_002939937.1 KEGG: sfu:Sfum_0993 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; Chromosomal replication initiator DnaA; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002939938.1 TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bsu:BSU22360 asparaginyl-tRNA synthetase YP_002939939.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_002939940.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bar:GBAA4632 aspartyl-tRNA synthetase YP_002939941.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: geo:Geob_2362 cytidylate kinase YP_002939942.1 KEGG: gsu:GSU2604 penicillin tolerance protein LytB; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_002939943.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: mxa:MXAN_3793 30S ribosomal protein S1 YP_002939944.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002939945.1 PFAM: protein of unknown function DUF205; KEGG: rlt:Rleg2_1297 protein of unknown function DUF205 YP_002939946.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: bha:BH3753 ATP synthase epsilon subunit YP_002939947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002939948.1 TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: sfu:Sfum_2583 ATP synthase F1, gamma subunit YP_002939949.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002939950.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: abb:ABBFA_003368 ATP synthase F1, delta subunit YP_002939951.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: bha:BH3758 F0F1 ATP synthase subunit B YP_002939952.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dol:Dole_0802 ATP synthase F0, C subunit YP_002939953.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002939954.1 KEGG: mex:Mext_3176 hypothetical protein YP_002939955.1 KEGG: dol:Dole_2573 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2 YP_002939956.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: smt:Smal_0827 alkylhydroperoxidase like protein, AhpD family YP_002939957.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: gme:Gmet_2464 TatD-related deoxyribonuclease:radical SAM family protein YP_002939958.1 PFAM: Protein of unknown function DUF933; KEGG: bha:BH4051 translation-associated GTPase YP_002939960.1 KEGG: lpn:lpg2913 hypothetical protein YP_002939961.1 PFAM: protein of unknown function DUF86; KEGG: gur:Gura_4166 hypothetical protein YP_002939962.1 PFAM: DNA polymerase beta domain protein region; KEGG: ccs:CCNA_03176 nucleotidyltransferase YP_002939963.1 KEGG: pde:Pden_5114 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_002939964.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: geo:Geob_2932 PhoH family protein YP_002939966.1 TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: baa:BA_5007 haloacid dehalogenase-like hydrolase YP_002939967.1 PFAM: GTP-binding protein HSR1-related; KEGG: baa:BA_5006 MMR_HSR1, GTPase of unknown function YP_002939968.1 PFAM: Propanediol utilization protein; KEGG: pmr:PMI2713 propanediol utilization protein YP_002939969.1 PFAM: protein of unknown function DUF72; KEGG: par:Psyc_1936 hypothetical protein YP_002939971.1 KEGG: gur:Gura_4193 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_002939972.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: bha:BH0077 hypothetical protein YP_002939973.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: nam:NAMH_1326 ribosomal protein L31 YP_002939975.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: bar:GBAA4648 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_002939976.1 PFAM: protein of unknown function UPF0118; KEGG: bsu:BSU27420 hypothetical protein YP_002939977.1 PFAM: Asparaginase/glutaminase; KEGG: bha:BH1624 L-asparaginase YP_002939978.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bcc:BCc_272 hypothetical protein YP_002939979.1 binds and unfolds substrates as part of the ClpXP protease YP_002939980.1 KEGG: mxa:MXAN_2051 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_002939981.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dal:Dalk_4244 regulatory protein, FmdB family YP_002939982.1 PFAM: Cupin 2 conserved barrel domain protein; protein of unknown function DUF861 cupin_3; KEGG: sfu:Sfum_1397 cupin 2, conserved barrel domain protein YP_002939983.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: baa:BA_0592 R3H, single-stranded nucleic acids-binding domain YP_002939984.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: hps:HPSH_07420 inner membrane protein translocase component YidC YP_002939985.1 PFAM: protein of unknown function DUF37; KEGG: bar:GBAA5048 hypothetical protein YP_002939986.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sat:SYN_01012 ribonuclease P protein component YP_002939987.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: dar:Daro_4204 50S ribosomal protein L34 YP_002939988.1 PFAM: SMC domain protein; KEGG: bsu:BSU24240 DNA repair and genetic recombination YP_002939989.1 KEGG: gur:Gura_2690 heat repeat-containing PBS lyase YP_002939990.1 KEGG: baa:BA_0174 UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_002939991.1 KEGG: dde:Dde_2946 HflK protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein YP_002939992.1 KEGG: dde:Dde_2947 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein YP_002939993.1 PFAM: protein of unknown function UPF0029; KEGG: dat:HRM2_43180 hypothetical protein YP_002939994.1 PFAM: peptidase M55 D-aminopeptidase; KEGG: pol:Bpro_0135 D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55 YP_002939995.1 KEGG: csa:Csal_1545 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_002939998.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: pca:Pcar_1049 rod shape-determining protein MreB YP_002939999.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: nis:NIS_1526 S-adenosylmethionine decarboxylase proenzyme YP_002940000.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002940001.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002940002.1 KEGG: gme:Gmet_2994 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2 YP_002940003.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002940004.1 KEGG: pin:Ping_0812 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_002940005.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1865 sugar transport system (permease) (binding protein dependent transporter) YP_002940006.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5335 binding-protein-dependent transport systems inner membrane component YP_002940008.1 KEGG: baa:BA_2669 protein-L-IsoD(D-D) O-methyltransferase (PCMT) YP_002940009.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002940010.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: bha:BH2365 RNA-binding protein Hfq YP_002940011.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: aca:ACP_1034 GTP-binding protein HflX YP_002940014.1 KEGG: bha:BH3300 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_002940015.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: afr:AFE_2188 ribosomal protein S20 YP_002940016.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bha:BH1140 sugar ABC transportor ATP-binding protein YP_002940017.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rsq:Rsph17025_3797 hypothetical protein YP_002940019.1 KEGG: bsu:BSU17460 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_002940020.1 KEGG: scl:sce3150 IMP cyclohydrolase YP_002940021.1 KEGG: hypothetical protein YP_002940022.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU0244 radical SAM domain-containing protein YP_002940023.1 PFAM: regulatory protein TetR; KEGG: sfu:Sfum_3459 TetR family transcriptional regulator YP_002940024.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: vpa:VPA1741 hypothetical protein YP_002940025.1 PFAM: basic membrane lipoprotein; KEGG: cvi:CV_2467 membrane lipoprotein YP_002940026.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: bpt:Bpet2493 glutamate dehydrogenase YP_002940028.1 PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_0781 glycosyl transferase, group 1 family protein YP_002940029.1 PFAM: ROK family protein; KEGG: aca:ACP_1127 ROK family protein YP_002940030.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_2010 binding-protein-dependent transport systems inner membrane component YP_002940031.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1942 sugar ABC transporter, permease protein YP_002940032.1 PFAM: extracellular solute-binding protein family 1; KEGG: ara:Arad_8312 sugar ABC transporter YP_002940033.1 PFAM: deoxynucleoside kinase; KEGG: baa:BA_0609 dNK, deoxynucleoside kinase YP_002940034.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: dol:Dole_0590 peptidase U61 LD-carboxypeptidase A YP_002940035.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dal:Dalk_2405 thioredoxin reductase YP_002940036.1 TIGRFAM: glutaredoxin-like domain protein; PFAM: glutaredoxin; KEGG: ank:AnaeK_2804 glutaredoxin-like domain protein YP_002940038.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: mca:MCA3112 SPFH domain-containing protein/band 7 family protein YP_002940039.1 PFAM: protein of unknown function DUF107; KEGG: sfu:Sfum_2309 protein of unknown function DUF107 YP_002940040.1 KEGG: hypothetical protein YP_002940041.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: nam:NAMH_1270 ribosomal protein L9 YP_002940042.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: nis:NIS_1166 30S ribosomal protein S18 YP_002940043.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sat:SYN_00925 single-strand DNA binding protein YP_002940044.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002940045.1 PFAM: protein of unknown function DUF523; KEGG: saz:Sama_3292 hypothetical protein YP_002940046.1 PFAM: Peptidase M23; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: afw:Anae109_0789 peptidase M23B YP_002940047.1 PFAM: diacylglycerol kinase; KEGG: cha:CHAB381_0614 diacylglycerol kinase YP_002940048.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sat:SYN_02500 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit YP_002940049.1 catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_002940050.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: gur:Gura_2185 dCMP deaminase YP_002940051.1 PFAM: Rubrerythrin; KEGG: sfu:Sfum_3220 rubrerythrin YP_002940052.1 KEGG: gur:Gura_0208 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002940054.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002940055.1 KEGG: bha:BH0666 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_002940056.1 PFAM: ribosomal L11 methyltransferase; Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; KEGG: cla:Cla_1260 ribosomal protein L11 methyltransferase YP_002940057.1 PFAM: protein of unknown function DUF501; KEGG: csa:Csal_3040 hypothetical protein YP_002940058.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002940059.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: pla:Plav_3229 histone family protein DNA-binding protein YP_002940060.1 KEGG: bha:BH0491 hypothetical protein YP_002940061.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein YP_002940062.1 PFAM: Integrase catalytic region; KEGG: ypy:YPK_3925 integrase catalytic region YP_002940064.1 PFAM: Integrase catalytic region; KEGG: bja:bll1898 transposase YP_002940065.1 PFAM: Stage V sporulation protein S; KEGG: bha:BH2375 stage V sporulation protein S YP_002940066.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: eli:ELI_03145 alpha-amylase YP_002940067.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: csa:Csal_0474 LSU ribosomal protein L21P YP_002940068.1 involved in the peptidyltransferase reaction during translation YP_002940069.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: dal:Dalk_2692 ribosomal protein L13 YP_002940070.1 forms a direct contact with the tRNA during translation YP_002940071.1 KEGG: gme:Gmet_0394 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_002940072.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: bha:BH1376 RNA polymerase sigma factor RpoD YP_002940074.1 SMART: AAA ATPase; KEGG: abc:ACICU_01440 ABC-type polar amino acid transport system, ATPase component YP_002940075.1 PFAM: PfkB domain protein; KEGG: baa:BA_4320 1-phosphofructokinase YP_002940076.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sfu:Sfum_2202 CBS domain containing membrane protein YP_002940077.1 KEGG: geo:Geob_1978 MiaB-like tRNA modifying enzyme; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_002940078.1 PFAM: aminotransferase class IV; KEGG: baa:BA_2352 aminotransferase class IV YP_002940079.1 PFAM: protein of unknown function DUF721; KEGG: gbm:Gbem_3436 hypothetical protein YP_002940080.1 KEGG: bsu:BSU00060 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_002940082.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: ilo:IL0440 cell division ATPase, FtsA YP_002940083.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002940084.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: geo:Geob_3374 type IV-A pilus assembly ATPase PilB YP_002940085.1 PFAM: dihydrodipicolinate reductase; KEGG: ade:Adeh_4039 dihydrodipicolinate reductase YP_002940087.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpb:RPB_4420 threonine synthase YP_002940089.1 PFAM: D-Lysine 56-aminomutase alpha subunit; cobalamin B12-binding domain protein; KEGG: mxa:MXAN_4388 D-lysine 5,6-aminomutase, alpha subunit YP_002940090.1 PFAM: BioY protein; KEGG: sfu:Sfum_1749 BioY protein YP_002940091.1 PFAM: protein of unknown function UPF0047; KEGG: gur:Gura_2106 hypothetical protein YP_002940093.1 PFAM: Integrase catalytic region; KEGG: bja:bll1898 transposase YP_002940095.1 PFAM: MgtC/SapB transporter; KEGG: geo:Geob_2390 MgtC/SapB transporter YP_002940096.1 PFAM: major facilitator superfamily MFS_1; KEGG: net:Neut_0214 major facilitator transporter YP_002940097.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: vch:VC1631 hypothetical protein YP_002940098.1 PFAM: FeoA family protein; KEGG: mgm:Mmc1_1730 FeoA family protein YP_002940099.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: dal:Dalk_1642 ferrous iron transport protein B YP_002940101.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dal:Dalk_4458 multi-sensor hybrid histidine kinase YP_002940102.1 PFAM: TrkA-N domain protein; KEGG: mca:MCA2849 potassium transporter peripheral membrane component YP_002940103.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: pla:Plav_3126 potassium transporter peripheral membrane component YP_002940104.1 PFAM: cation transporter; KEGG: dol:Dole_3217 TrkH family potassium uptake protein YP_002940105.1 KEGG: geo:Geob_2622 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_002940106.1 KEGG: bha:BH1414 hypothetical protein YP_002940107.1 PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: ank:AnaeK_1135 domain of unknown function DUF1957 YP_002940108.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: ppd:Ppro_0322 pyruvate/ketoisovalerate oxidoreductase, gamma subunit YP_002940109.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ppd:Ppro_0323 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit YP_002940110.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: nam:NAMH_0242 pyruvate synthase subunit PorA YP_002940111.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: ppd:Ppro_0325 thiamine pyrophosphate binding domain-containing protein YP_002940112.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bha:BH1177 protein secretion (post-translocation chaperonin) YP_002940113.1 KEGG: Phosphoribulokinase / Uridine kinase family protein YP_002940114.1 PFAM: protein of unknown function DUF156; KEGG: sat:SYN_00719 cytoplasmic protein YP_002940115.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dvl:Dvul_0323 protein-L-isoaspartate methyltransferase-like protein YP_002940116.1 KEGG: mgm:Mmc1_3509 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_002940119.1 KEGG: ppd:Ppro_1642 rRNA methylase YP_002940121.1 PFAM: metallophosphoesterase; KEGG: sat:SYN_00526 calcineurin-like phosphoesterase YP_002940122.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: gsu:GSU0489 Mg chelatase-related protein YP_002940123.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_002940125.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_0841 biotin synthase YP_002940126.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: dde:Dde_2276 small GTP-binding protein domain-containing protein YP_002940127.1 catalyzes the formation of fumarate from aspartate YP_002940128.1 KEGG: reu:Reut_A2504 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein YP_002940129.1 KEGG: bha:BH0532 hypothetical protein YP_002940130.1 KEGG: ppr:PBPRB1987 hypothetical protein YP_002940131.1 TIGRFAM: oligoendopeptidase, M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: baa:BA_3093 Peptidase_M3, peptidase family M3 YP_002940132.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1050 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002940133.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bha:BH0799 methionine gamma-lyase YP_002940134.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sus:Acid_1558 alcohol dehydrogenase YP_002940135.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: baa:BA_3891 haloacid dehalogenase-like hydrolase YP_002940136.1 PFAM: PfkB domain protein; KEGG: smd:Smed_4013 PfkB domain protein YP_002940137.1 PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_0652 acriflavin resistance protein YP_002940138.1 PFAM: glycoside hydrolase family 1; KEGG: mxa:MXAN_6303 beta-glucosidase A YP_002940140.1 KEGG: cbd:CBUD_0079 hypothetical protein YP_002940142.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tmz:Tmz1t_0663 FMN-binding domain protein YP_002940143.1 PFAM: protein of unknown function DUF34; KEGG: vsa:VSAL_I0840 hypothetical protein YP_002940145.1 KEGG: shm:Shewmr7_0048 tetratricopeptide domain protein YP_002940146.1 KEGG: scl:sce6765 hypothetical protein YP_002940147.1 PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: von Willebrand factor type A; KEGG: sfu:Sfum_3690 vault protein inter-alpha-trypsin domain protein YP_002940148.1 TIGRFAM: M6 family metalloprotease domain protein; PFAM: peptidase M6 immune inhibitor A; KEGG: pin:Ping_2144 peptidase M6, immune inhibitor A YP_002940149.1 KEGG: ccv:CCV52592_2067 TPR repeat-containing protein YP_002940150.1 PFAM: metallophosphoesterase; KEGG: ilo:IL0120 membrane-associated protein YP_002940151.1 PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_3595 radical SAM domain protein YP_002940152.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bsu:BSU11110 hypothetical protein YP_002940153.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nis:NIS_0078 cation efflux system protein YP_002940155.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bha:BH0604 methanol dehydrogenase regulatory protein YP_002940156.1 PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein YP_002940158.1 KEGG: dal:Dalk_0153 Na+/glutamate symporter-like protein YP_002940160.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: baa:BA_3394 DUF194, uncharacterized protein, DegV family COG1307 YP_002940161.1 PFAM: Chromate transporter; KEGG: pin:Ping_2327 chromate transporter, chromate ion transporter (CHR) family protein YP_002940162.1 PFAM: Chromate transporter; KEGG: vei:Veis_3786 chromate transporter YP_002940165.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vha:VIBHAR_02834 hypothetical protein YP_002940166.1 PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2168 protein of unknown function DUF214 YP_002940167.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: sat:SYN_00230 response regulator receiver domain-containing protein YP_002940168.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: esa:ESA_01838 hypothetical protein YP_002940169.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bha:BH1536 anti-sigma F factor antagonist (stage II sporulation protein AA) YP_002940170.1 KEGG: sfu:Sfum_4032 anti-sigma regulatory factor, serine/threonine protein kinase YP_002940171.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: nis:NIS_1346 two-component sensor histidine kinase/response regulator YP_002940173.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: dal:Dalk_4989 ATP/cobalamin adenosyltransferase YP_002940175.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002940176.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gur:Gura_2115 integral membrane sensor signal transduction histidine kinase YP_002940177.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_002940179.1 KEGG: gur:Gura_2803 metal dependent phosphohydrolase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; GAF domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region; GAF domain protein YP_002940180.1 KEGG: gsu:GSU3009 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_002940181.1 PFAM: cobalbumin biosynthesis protein; KEGG: hne:HNE_1521 cobinamide kinase / cobinamide phosphate guanyltransferase YP_002940182.1 KEGG: dvl:Dvul_2481 hypothetical protein YP_002940183.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: smd:Smed_1604 cobalamin synthase YP_002940184.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ecn:Ecaj_0411 BadM/Rrf2 family transcriptional regulator YP_002940185.1 KEGG: cbc:CbuK_1370 DNA polymerase X family YP_002940186.1 PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_41620 permease of the major facilitator superfamily YP_002940187.1 PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: har:HEAR0727 mannose-1-phosphate guanyltransferase YP_002940188.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cja:CJA_3247 alpha-amylase, , amy13H YP_002940189.1 PFAM: inner-membrane translocator; KEGG: dvm:DvMF_3028 inner-membrane translocator YP_002940190.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0138 branched-chain amino acid ABC transporter, permease protein YP_002940191.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: baa:BA_4398 simple sugar transport system ATP-binding protein YP_002940192.1 PFAM: basic membrane lipoprotein; KEGG: dps:DP0677 hypothetical protein YP_002940193.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter ATP-binding protein YP_002940194.1 KEGG: sde:Sde_3735 heavy metal efflux pump CzcA YP_002940195.1 PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: hypothetical protein YP_002940197.1 KEGG: hch:HCH_03464 methyl-accepting chemotaxis protein YP_002940198.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: acp:A2cp1_1160 DEAD/DEAH box helicase domain protein YP_002940202.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tgr:Tgr7_2207 radical SAM domain protein YP_002940203.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tgr:Tgr7_2204 radical SAM domain protein YP_002940204.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: bha:BH2812 lipoate protein ligase YP_002940205.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; KEGG: efe:EFER_2372 alpha-mannosidase YP_002940206.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 hypothetical protein YP_002940207.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1865 sugar transport system (permease) (binding protein dependent transporter) YP_002940208.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b20969 sugar uptake ABC transporter permease protein YP_002940209.1 KEGG: Gm50; gene model 50, (NCBI) YP_002940210.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: shm:Shewmr7_3384 alpha-1,2-mannosidase YP_002940211.1 PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein GntR HTH; KEGG: sus:Acid_4349 GntR family transcriptional regulator YP_002940212.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: dde:Dde_1586 2-nitropropane dioxygenase family oxidoreductase YP_002940213.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: malate dehydrogenase ; K00025 malate dehydrogenase YP_002940214.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: bar:GBAA4848 malate dehydrogenase YP_002940215.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57 YP_002940217.1 PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: sat:SYN_01513 ATPase YP_002940218.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: bxe:Bxe_B2763 transposase IS110 YP_002940220.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin; KEGG: ppd:Ppro_1300 alpha-2-macroglobulin domain-containing protein YP_002940221.1 PFAM: protein of unknown function DUF1175; KEGG: ecz:ECS88_2377 hypothetical protein YP_002940222.1 KEGG: bha:BH1812 hypothetical protein YP_002940223.1 KEGG: baa:BA_3344 hypothetical protein YP_002940225.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH1812 hypothetical protein YP_002940228.1 PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2664 permease YP_002940229.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_002940231.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002940233.1 KEGG: dde:Dde_0885 hypothetical protein YP_002940234.1 KEGG: scl:sce5021 hydrolase YP_002940235.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: pol:Bpro_4755 aspartate racemase YP_002940236.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: gur:Gura_3277 FolC bifunctional protein YP_002940237.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: bsu:BSU15180 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002940238.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sat:SYN_01742 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_002940239.1 KEGG: DNA-directed RNA polymerase, omega subunit family protein YP_002940240.1 PFAM: nucleoside recognition domain protein; KEGG: aha:AHA_3839 transporter gate domain-containing protein YP_002940241.1 KEGG: dal:Dalk_3208 hypothetical protein YP_002940243.1 KEGG: sml:Smlt1976 hypothetical protein YP_002940244.1 PFAM: LemA family protein; KEGG: mmr:Mmar10_1566 LemA family protein YP_002940245.1 PFAM: Phosphoglycerate mutase; KEGG: baa:BA_2572 PGAM, phosphoglycerate mutase family YP_002940246.1 PFAM: NUDIX hydrolase; KEGG: sfv:SFV_2366 regulator YP_002940247.1 PFAM: glycoside hydrolase clan GH-D; KEGG: hypothetical protein YP_002940248.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein YP_002940250.1 PFAM: Integrase catalytic region; KEGG: sfu:Sfum_2833 integrase, catalytic region YP_002940251.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sfu:Sfum_2832 IstB domain protein ATP-binding protein YP_002940252.1 KEGG: pca:Pcar_1474 hypothetical protein YP_002940253.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: dat:HRM2_04840 PflA YP_002940254.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002940255.1 KEGG: rce:RC1_0992 exonuclease, TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_002940256.1 KEGG: bha:BH2668 hippurate hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002940258.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: pfo:Pfl01_4532 glycerol kinase YP_002940259.1 PFAM: protein of unknown function UPF0079; KEGG: rsq:Rsph17025_2955 hypothetical protein YP_002940260.1 KEGG: rsh:Rsph17029_1493 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase YP_002940261.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002940262.1 KEGG: tcx:Tcr_1150 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002940263.1 PFAM: protein of unknown function DUF47; KEGG: lpn:lpg0584 phosphate transport regulator YP_002940264.1 PFAM: phosphate transporter; KEGG: sfr:Sfri_3885 phosphate transporter YP_002940265.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_002940267.1 KEGG: sse:Ssed_0370 phosphate transporter YP_002940268.1 PFAM: NUDIX hydrolase; KEGG: vpa:VP1487 MutT/NUDIX family protein YP_002940269.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: baa:BA_0277 ribosomal_S30, Sigma 54 modulation protein / S30EA ribosomal protein YP_002940270.1 KEGG: gme:Gmet_3192 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_002940271.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pca:Pcar_0183 transcriptional regulator YP_002940272.1 PFAM: permease; KEGG: dat:HRM2_48210 permease YP_002940273.1 TIGRFAM: redox-active disulfide protein 2; PFAM: glutaredoxin; KEGG: sfu:Sfum_3598 redox-active disulfide protein 2 YP_002940274.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gsu:GSU0452 sensor histidine kinase YP_002940275.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gsu:GSU0451 DNA-binding response regulator YP_002940276.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: bha:BH0375 hypothetical protein YP_002940277.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ppr:PBPRB1170 TldD protein YP_002940278.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: gme:Gmet_0947 peptidase U62, modulator of DNA gyrase YP_002940279.1 KEGG: nam:NAMH_1055 hydrogenase expression/synthesis, HypA YP_002940280.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: wsu:WS0795 hydrogenase expression/formation protein YP_002940281.1 PFAM: hydrogenase formation HypD protein; KEGG: sfu:Sfum_4014 hydrogenase expression/formation protein HypD YP_002940282.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dat:HRM2_11590 HypC YP_002940283.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: gsu:GSU0306 hydrogenase maturation protein HypF YP_002940284.1 TIGRFAM: hydrogenase maturation protease; KEGG: rru:Rru_A0322 peptidase M52, hydrogen uptake protein YP_002940285.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rru:Rru_A0318 4Fe-4S ferredoxin, iron-sulfur binding YP_002940286.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: mgm:Mmc1_2214 monovalent cation/H+ antiporter subunit G YP_002940287.1 PFAM: multiple resistance and pH regulation protein F; KEGG: atc:AGR_C_1665 cation efflux system protein YP_002940288.1 PFAM: cation antiporter; KEGG: mgm:Mmc1_2216 membrane bound protein complex subunit MbxA YP_002940289.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ppd:Ppro_0589 NADH dehydrogenase (quinone) YP_002940290.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mgm:Mmc1_2211 membrane bound protein complex subunit MbxG YP_002940291.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: ppd:Ppro_3524 NADH dehydrogenase (ubiquinone) YP_002940292.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sus:Acid_0110 NADH (or F420H2) dehydrogenase, subunit C YP_002940293.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rru:Rru_A0321 NADH dehydrogenase (ubiquinone), 20 kDa subunit YP_002940294.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: ppd:Ppro_3523 respiratory-chain NADH dehydrogenase, subunit 1 YP_002940295.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein YP_002940296.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gur:Gura_3587 oxidoreductase FAD/NAD(P)-binding subunit YP_002940297.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0867 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002940299.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hypothetical protein YP_002940300.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: baa:BA_3496 HTH_ARSR, helix_turn_helix, arsenical resistance operon repressor YP_002940301.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dal:Dalk_3679 ArsR family transcriptional regulator YP_002940304.1 PFAM: PfkB domain protein; KEGG: sei:SPC_3671 ribokinase YP_002940306.1 PFAM: acylphosphatase; KEGG: nam:NAMH_0944 acylphosphatase YP_002940307.1 PFAM: protein of unknown function DUF1121; KEGG: wsu:WS1833 hypothetical protein YP_002940308.1 PFAM: glycoside hydrolase family 31; KEGG: scl:sce3449 Alpha-glucosidase family protein YP_002940309.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_03206 ABC transporter ATP-binding protein YP_002940310.1 PFAM: SufBD protein; KEGG: dat:HRM2_00580 hypothetical protein YP_002940311.1 PFAM: peptidase M42 family protein; peptidase M20; KEGG: baa:BA_1479 Peptidase_M20, peptidase family M20/M25/M40 YP_002940313.1 KEGG: spl:Spea_4083 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002940314.1 KEGG: GG21085 gene product from transcript GG21085-RA YP_002940315.1 KEGG: rty:RT0229 response regulator PleD; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_002940316.1 PFAM: protein of unknown function DUF114; KEGG: bbt:BBta_7800 hypothetical protein YP_002940317.1 PFAM: protein of unknown function DUF1063; KEGG: dal:Dalk_4447 protein of unknown function DUF1063 YP_002940318.1 KEGG: rru:Rru_A1471 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_002940319.1 KEGG: lch:Lcho_2490 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_002940320.1 KEGG: shl:Shal_2748 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_002940321.1 TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dol:Dole_1228 cob(I)alamin adenosyltransferase YP_002940322.1 PFAM: RbsD or FucU transport; KEGG: baa:BA_1254 simple sugar transport system permease protein YP_002940323.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: pmu:PM0152 ribokinase YP_002940324.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH3732 ribose ABC transporter (ribose-binding protein) YP_002940325.1 PFAM: inner-membrane translocator; KEGG: mmw:Mmwyl1_1987 monosaccharide-transporting ATPase YP_002940326.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kpn:KPN_00510 ABC transporter YP_002940327.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: pat:Patl_0121 LacI family transcription regulator YP_002940328.1 KEGG: nam:NAMH_0394 hypothetical protein YP_002940330.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pat:Patl_3871 XRE family transcriptional regulator YP_002940331.1 PFAM: Transaldolase; KEGG: vpa:VPA1569 fructose-6-phosphate aldolase YP_002940332.1 PFAM: PfkB domain protein; KEGG: bha:BH1857 fructokinase YP_002940333.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: dat:HRM2_17730 channel protein (hemolysin III family protein) YP_002940335.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002940336.1 PFAM: phospholipase/Carboxylesterase; KEGG: sus:Acid_1148 esterase YP_002940337.1 PFAM: protein of unknown function UPF0157; KEGG: baa:BA_4064 hypothetical protein YP_002940338.1 PFAM: DNA alkylation repair enzyme; KEGG: swd:Swoo_2024 DNA alkylation repair enzyme YP_002940339.1 PFAM: Phosphoglycerate mutase; KEGG: baa:BA_2544 PGAM, phosphoglycerate mutase family YP_002940341.1 KEGG: dal:Dalk_2332 nitroreductase YP_002940342.1 PFAM: Choloylglycine hydrolase; peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: lpc:LPC_2491 hypothetical protein YP_002940344.1 PFAM: transcriptional regulator PadR family protein; KEGG: dat:HRM2_38900 transcriptional regulator (PadR family protein) YP_002940345.1 KEGG: dde:Dde_0972 phenylacetate-CoA ligase YP_002940346.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eba:ebA5789 (S)-1-phenylethanol dehydrogenase YP_002940347.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: dal:Dalk_2669 CoA-substrate-specific enzyme activase YP_002940348.1 PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_4140 transposase IS3/IS911 YP_002940349.1 PFAM: Integrase catalytic region; KEGG: nis:NIS_0744 transposase YP_002940350.1 KEGG: dal:Dalk_2669 CoA-substrate-specific enzyme activase YP_002940351.1 KEGG: gur:Gura_3461 hypothetical protein YP_002940352.1 PFAM: histidine triad (HIT) protein; KEGG: ppd:Ppro_1004 histidine triad (HIT) protein YP_002940353.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pca:Pcar_2869 hypothetical protein YP_002940354.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: geo:Geob_2035 methyltransferase type 11 YP_002940357.1 PFAM: purine or other phosphorylase family 1; KEGG: glo:Glov_2578 purine or other phosphorylase family 1 YP_002940359.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: gme:Gmet_0794 GTPase EngC YP_002940360.1 PFAM: FMN-binding domain protein; KEGG: eca:ECA2794 hypothetical protein YP_002940361.1 PFAM: regulatory protein TetR; KEGG: sbp:Sbal223_4083 TetR family transcriptional regulator YP_002940362.1 KEGG: asu:Asuc_0513 protoporphyrinogen oxidase YP_002940364.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpd:BURPS668_1999 major facilitator family transporter YP_002940365.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: abb:ABBFA_000782 6-O-methylguanine DNA methyltransferase, DNA binding domain protein YP_002940366.1 TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; KEGG: mmw:Mmwyl1_4096 isoaspartyl dipeptidase YP_002940367.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002940368.1 PFAM: protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vvy:VV0273 hypothetical protein YP_002940369.1 KEGG: gur:Gura_4038 hypothetical protein YP_002940370.1 PFAM: peptidase S15; KEGG: mxa:MXAN_6277 lipase YP_002940376.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bar:GBAA1373 GntR family transcriptional regulator YP_002940378.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: baa:BA_2626 ABC transporter YP_002940379.1 PFAM: Cupin 2 conserved barrel domain protein YP_002940380.1 KEGG: afr:AFE_1707 sensory box-containing diguanylate cyclase, TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_002940381.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: geo:Geob_3409 CRISPR-associated protein Cas2 YP_002940382.1 PFAM: protein of unknown function DUF324 YP_002940384.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: mmw:Mmwyl1_2690 CRISPR-associated RAMP Cmr4 family protein family protein YP_002940385.1 TIGRFAM: CRISPR-associated protein, Csx11 family; KEGG: hypothetical protein YP_002940386.1 PFAM: protein of unknown function DUF324; KEGG: msu:MS1649 hypothetical protein YP_002940387.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: hypothetical protein YP_002940388.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cha:CHAB381_0393 CRISPR-associated protein Cas2 YP_002940389.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cff:CFF8240_0665 CRISPR-associated protein Cas1 YP_002940390.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cff:CFF8240_0664 CRISPR-associated protein Cas4 YP_002940391.1 KEGG: cco:CCC13826_1422 CRISPR-associated helicase Cas3 domain-containing protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase YP_002940392.1 TIGRFAM: CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated protein Cas5; PFAM: protein of unknown function DUF522; KEGG: cco:CCC13826_1421 CRISPR-associated protein Cas5 YP_002940393.1 TIGRFAM: CRISPR-associated protein, Csh2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; KEGG: ccv:CCV52592_1292 CRISPR-associated protein, Csh2 family YP_002940395.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57 YP_002940396.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: hypothetical LOC579607 YP_002940397.1 PFAM: oxidoreductase domain protein; KEGG: baa:BA_4144 GFO_IDH_MocA, oxidoreductase family, NAD-binding Rossmann fold YP_002940399.1 PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_4520 extracellular solute-binding protein, family 1 YP_002940400.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_2483 binding-protein-dependent transport systems inner membrane component YP_002940401.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5336 binding-protein-dependent transport systems inner membrane component YP_002940402.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bar:GBAA5107 N-acylamino acid racemase YP_002940404.1 PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_0687 dihydrodipicolinate synthetase YP_002940405.1 KEGG: dde:Dde_3030 hypothetical protein YP_002940406.1 PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: sed:SeD_A3612 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit YP_002940407.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: bcj:BCAS0466 N-acetylglucosamine kinase YP_002940408.1 PFAM: sugar isomerase (SIS); KEGG: rlt:Rleg2_4761 sugar isomerase (SIS) YP_002940409.1 PFAM: oxidoreductase domain protein; KEGG: hypothetical LOC579607 YP_002940410.1 PFAM: TM1410 hypothetical-related protein; Carbohydrate-binding family 9; KEGG: aav:Aave_1043 signal peptide protein YP_002940411.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1866 sugar transport system (permease) (binding protein dependent transporter) YP_002940412.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1865 sugar transport system (permease) (binding protein dependent transporter) YP_002940413.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 hypothetical protein YP_002940414.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: csa:Csal_2105 DeoR family transcriptional regulator YP_002940415.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_002940416.1 KEGG: bid:Bind_1584 general secretion pathway protein G YP_002940417.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpd:BURPS668_1999 major facilitator family transporter YP_002940418.1 PFAM: MOSC domain containing protein; KEGG: gbm:Gbem_2271 MOSC domain containing protein YP_002940419.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: sat:SYN_00266 molybdopterin biosynthesis protein YP_002940420.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: gur:Gura_3323 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_002940421.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_1736 NifC-like ABC-type porter YP_002940422.1 KEGG: shm:Shewmr7_3972 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002940423.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: sat:SYN_02926 molybdenum cofactor biosynthesis protein C YP_002940424.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sat:SYN_02931 cytoplasmic protein YP_002940425.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: bsu:BSU29100 two-component sensor histidine kinase YP_002940426.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: baa:BA_0573 REC, CheY-homologous receiver domain YP_002940427.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: bar:GBAA4492 phosphate transporter PhoU YP_002940428.1 KEGG: tgr:Tgr7_2650 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_002940429.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dol:Dole_1927 phosphate ABC transporter, inner membrane subunit PstA YP_002940430.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_2887 phosphate ABC transporter, inner membrane subunit PstC YP_002940431.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dal:Dalk_1427 phosphate binding protein YP_002940432.1 PFAM: glycosidase PH1107-related; KEGG: aba:Acid345_0916 glycosidase, PH1107-related YP_002940433.1 PFAM: glycosidase PH1107-related; Glycosyl hydrolase family 32 domain protein; KEGG: aba:Acid345_0916 glycosidase, PH1107-related YP_002940434.1 PFAM: major facilitator superfamily MFS_1; KEGG: pzu:PHZ_c2267 permease of the major facilitator superfamily YP_002940435.1 PFAM: FeoA family protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: dal:Dalk_2732 iron (metal) dependent repressor, DtxR family YP_002940436.1 PFAM: FeoA family protein; KEGG: dat:HRM2_10920 Fur YP_002940437.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: dal:Dalk_1642 ferrous iron transport protein B YP_002940439.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mes:Meso_0956 GCN5-related N-acetyltransferase YP_002940441.1 KEGG: neu:NE1602 general secretion pathway protein G YP_002940442.1 KEGG: saz:Sama_0331 hypothetical protein YP_002940443.1 PFAM: protein of unknown function DUF952; KEGG: rru:Rru_A0513 hypothetical protein YP_002940444.1 KEGG: sat:SYN_01802 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002940445.1 KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR YP_002940446.1 KEGG: pub:SAR11_1219 fimbrial protein pilin YP_002940449.1 KEGG: bha:BH0421 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_002940451.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: ses:SARI_04365 DNA-binding transcriptional regulator AgaR YP_002940452.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bba:Bd0589 acetyltransferase YP_002940453.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dno:DNO_0697 M20 family peptidase YP_002940454.1 PFAM: sugar isomerase (SIS); KEGG: rlt:Rleg2_4761 sugar isomerase (SIS) YP_002940455.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: vei:Veis_2597 tagatose-bisphosphate aldolase YP_002940456.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sse:Ssed_3778 response regulator YP_002940457.1 KEGG: dal:Dalk_4194 transposase IS4 family protein YP_002940458.1 PFAM: nitroreductase; KEGG: gsu:GSU0819 hypothetical protein YP_002940460.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dds:Ddes_2051 iron-containing alcohol dehydrogenase YP_002940461.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: hypothetical protein ; K06950 YP_002940462.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002940463.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002940464.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: gme:Gmet_3339 methionyl-tRNA formyltransferase YP_002940466.1 SMART: helicase c2; Helicase-like, DEXD box c2 type; DEAD-like helicase; KEGG: gur:Gura_4122 helicase C2 YP_002940467.1 KEGG: mgm:Mmc1_1401 phosphoribosyltransferase YP_002940468.1 PFAM: glycosyl transferase group 1; KEGG: rpi:Rpic_3774 glycosyl transferase group 1 YP_002940469.1 PFAM: conserved hypothetical protein; KEGG: ilo:IL0119 hypothetical protein YP_002940470.1 PFAM: glycosyl transferase group 1; KEGG: mfa:Mfla_0790 1,2-diacylglycerol 3-glucosyltransferase YP_002940471.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: glo:Glov_3565 MATE efflux family protein YP_002940472.1 KEGG: mca:MCA3077 ABC transporter, permease protein YP_002940473.1 PFAM: peptidase S41; KEGG: sus:Acid_0918 peptidase S41 YP_002940474.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rty:RT0691 lipid A export ATP-binding/permease protein MsbA YP_002940475.1 PFAM: peptidase S41; KEGG: sus:Acid_0918 peptidase S41 YP_002940476.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dps:DP2634 ABC transporter ATP-binding protein YP_002940477.1 PFAM: Radical SAM domain protein; KEGG: abu:Abu_0466 quinohemoprotein amine dehydrogenase, SAM-radical dependent activating subunit YP_002940481.1 PFAM: transposase mutator type; KEGG: par:Psyc_0534 transposase mutator family protein YP_002940482.1 PFAM: Integrase catalytic region; KEGG: nis:NIS_0744 transposase YP_002940483.1 PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_4140 transposase IS3/IS911 YP_002940484.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU04490 hypothetical protein YP_002940485.1 PFAM: Radical SAM domain protein; KEGG: afw:Anae109_2359 radical SAM domain-containing protein YP_002940486.1 PFAM: Radical SAM domain protein; KEGG: abu:Abu_0466 quinohemoprotein amine dehydrogenase, SAM-radical dependent activating subunit YP_002940487.1 PFAM: peptidase S41; KEGG: sus:Acid_0918 peptidase S41 YP_002940489.1 PFAM: peptidase S41; KEGG: sus:Acid_0918 peptidase S41 YP_002940491.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU02750 Na+ ABC transporter ATP-binding protein YP_002940492.1 PFAM: ABC-2 type transporter; KEGG: cff:CFF8240_0262 ABC-type multidrug transport system permease component YP_002940495.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hpg:HPG27_778 osmoprotection protein YP_002940496.1 KEGG: tdn:Suden_1026 periplasmic copper-binding YP_002940497.1 KEGG: hypothetical protein YP_002940499.1 PFAM: Integrase catalytic region; KEGG: nis:NIS_0744 transposase YP_002940500.1 PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_4140 transposase IS3/IS911 YP_002940502.1 PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2664 permease YP_002940504.1 PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2577 permease YP_002940507.1 KEGG: mca:MCA3077 ABC transporter, permease protein YP_002940508.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3893 ABC transporter ATP-binding protein YP_002940512.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hpg:HPG27_778 osmoprotection protein YP_002940513.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: hpg:HPG27_348 multidrug resistance protein YP_002940515.1 PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2664 permease YP_002940517.1 KEGG: pmy:Pmen_1784 glutamine amidotransferase, class-II YP_002940518.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: baa:BA_0606 SNO glutamine amidotransferase family YP_002940519.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002940520.1 PFAM: Quinolinate phosphoribosyl transferase; KEGG: bar:GBAA4939 nicotinate phosphoribosyltransferase YP_002940521.1 PFAM: isochorismatase hydrolase; KEGG: sfu:Sfum_2603 isochorismatase hydrolase YP_002940523.1 KEGG: bha:BH1197 hypothetical protein YP_002940525.1 KEGG: scl:sce1452 hypothetical protein YP_002940526.1 PFAM: extracellular solute-binding protein family 1; KEGG: esa:ESA_01603 hypothetical protein YP_002940527.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: esa:ESA_01604 hypothetical protein YP_002940528.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ect:ECIAI39_1664 sugar transporter subunit: permease component of ABC superfamily transporter YP_002940529.1 KEGG: dal:Dalk_2929 glycosyl transferase family 2 YP_002940530.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: bha:BH2675 RpiR transcriptional regulator YP_002940531.1 PFAM: alanine racemase domain protein; KEGG: sat:SYN_00571 alanine racemase domain-containing protein YP_002940532.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH2121 hypothetical protein YP_002940533.1 PFAM: glutamine amidotransferase class-I; KEGG: cff:CFF8240_0351 anthranilate synthase component II YP_002940534.1 KEGG: baa:BA_3595 peptidase_C15, pyroglutamyl peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I YP_002940535.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tdn:Suden_0602 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002940536.1 PFAM: ABC-2 type transporter; KEGG: bba:Bd1879 ABC-type multidrug transporter permease protein YP_002940537.1 KEGG: baa:BA_2299 ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_002940538.1 PFAM: transcriptional regulator PadR family protein; KEGG: gox:GOX0839 hypothetical protein YP_002940540.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: baa:BA_2750 DUF194, uncharacterized protein, DegV family COG1307 YP_002940541.1 SMART: helix-turn-helix domain protein; KEGG: baa:BA_3511 HTH_XRE, helix-turn-helix XRE-family like proteins YP_002940543.1 PFAM: ThiJ/PfpI domain protein; KEGG: sat:SYN_01335 isoprenoid biosynthesis protein YP_002940544.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bar:GBAA3800 hypothetical protein YP_002940545.1 PFAM: NUDIX hydrolase; KEGG: lpf:lpl1470 hypothetical protein YP_002940546.1 PFAM: Thioredoxin domain; KEGG: baa:BA_0963 hypothetical protein YP_002940549.1 PFAM: protein of unknown function DUF214; KEGG: geo:Geob_2022 protein of unknown function DUF214 YP_002940550.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_2214 ABC transporter, ATPase subunit YP_002940551.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU0452 sensor histidine kinase YP_002940552.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: baa:BA_0573 REC, CheY-homologous receiver domain YP_002940553.1 KEGG: afw:Anae109_2420 hypothetical protein YP_002940554.1 KEGG: afw:Anae109_4243 hypothetical protein YP_002940555.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sfu:Sfum_1713 peptide chain release factor 1 YP_002940556.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: bbr:BB0791 twitching mobility protein YP_002940557.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ank:AnaeK_4258 alpha amylase catalytic region YP_002940558.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bar:GBAA4640 cation efflux family protein YP_002940559.1 KEGG: glo:Glov_2722 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: PAS domain containing protein YP_002940560.1 PFAM: Rubrerythrin; KEGG: sat:SYN_02523 rubrerythrin YP_002940561.1 KEGG: PCK1; phosphoenolpyruvate carboxykinase YP_002940562.1 PFAM: protein of unknown function DUF195; KEGG: dol:Dole_3209 hypothetical protein YP_002940563.1 PFAM: protein of unknown function DUF89; KEGG: dal:Dalk_1756 protein of unknown function DUF89 YP_002940564.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ypg:YpAngola_A3118 spermidine acetyltransferase YP_002940565.1 TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: gbm:Gbem_3234 1-phosphofructokinase YP_002940567.1 PFAM: protein of unknown function DUF558; KEGG: sat:SYN_02278 cytoplasmic protein YP_002940568.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002940569.1 PFAM: OstA family protein; KEGG: hypothetical protein YP_002940570.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bha:BH3072 transcriptional regulator YP_002940571.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002940572.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: gur:Gura_3259 nucleoside triphosphate pyrophosphohydrolase YP_002940573.1 KEGG: ftn:FTN_0559 peptidyl-prolyl cis-trans isomerase (PPIase) YP_002940574.1 PFAM: protein of unknown function DUF59; KEGG: nis:NIS_1811 hypothetical protein YP_002940575.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: sat:SYN_01794 peptide release factor-glutamine N5-methyltransferase YP_002940576.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_002940578.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002940579.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: dal:Dalk_5224 chromosome segregation and condensation protein ScpA YP_002940580.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: baa:BA_4737 segregation and condensation protein B YP_002940581.1 PFAM: pseudouridine synthase; KEGG: gur:Gura_2505 pseudouridine synthase YP_002940582.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter family protein YP_002940583.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cju:C8J_0699 ABC transport system ATP-binding protein YP_002940584.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cha:CHAB381_1301 diaminopimelate decarboxylase YP_002940585.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_002940586.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_2483 binding-protein-dependent transport systems inner membrane component YP_002940587.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_7347 ABC transporter membrane spanning protein (sugar) YP_002940588.1 PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_4520 extracellular solute-binding protein, family 1 YP_002940589.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: beta-N-acetylglucosaminidase, ; K01207 beta-N-acetylhexosaminidase YP_002940590.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0419 GntR family transcriptional regulator YP_002940591.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_002940592.1 PFAM: beta-lactamase; KEGG: afr:AFE_2172 beta-lactamase YP_002940593.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002940594.1 KEGG: hypothetical protein YP_002940595.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sfu:Sfum_3914 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_002940596.1 PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: baa:BA_0017 arsenical pump membrane protein YP_002940597.1 PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: baa:BA_0670 Clp_N, Clp amino terminal domain YP_002940598.1 PFAM: heat shock protein Hsp20; CS; KEGG: bbt:BBta_3527 HspC2 heat shock protein YP_002940599.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002940600.1 PFAM: protein of unknown function DUF47; KEGG: swp:swp_0813 hypothetical protein YP_002940601.1 PFAM: phosphate transporter; KEGG: dal:Dalk_4122 phosphate transporter YP_002940603.1 KEGG: bsu:BSU16580 DNA polymerase III PolC; TIGRFAM: DNA polymerase III, alpha subunit; DNA polymerase III, epsilon subunit; PFAM: DNA polymerase III alpha subunit; Exonuclease RNase T and DNA polymerase III; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: Exonuclease; phosphoesterase PHP domain protein YP_002940604.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002940605.1 KEGG: dol:Dole_1502 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_002940606.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002940607.1 PFAM: PSP1 domain protein; KEGG: bha:BH0045 signal peptidase-like protein YP_002940608.1 KEGG: gme:Gmet_2319 DNA polymerase III, delta prime subunit YP_002940609.1 KEGG: bsu:BSU22730 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_002940610.1 PFAM: methyltransferase small; protein of unknown function Met10; RNA methylase; SMART: PUA domain containing protein; KEGG: mca:MCA1049 hypothetical protein YP_002940612.1 KEGG: bha:BH1086 required for glycogen biosynthesis; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase YP_002940613.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002940615.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides YP_002940616.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: psa:PST_1210 electron transport complex protein RnfC YP_002940617.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pca:Pcar_0262 NADH:ubiquinone oxidoreductase, RnfD subunit-like YP_002940618.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; KEGG: tcx:Tcr_1032 electron transport complex, RnfABCDGE type, G subunit YP_002940619.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_002940620.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pca:Pcar_0265 NADH:ubiquinone oxidoreductase, RnfA subunit-like YP_002940621.1 PFAM: Fe-S cluster domain protein; KEGG: rsq:Rsph17025_3193 respiratory-chain NADH dehydrogenase domain-containing protein YP_002940622.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002940623.1 PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sde:Sde_2590 peptidase RseP YP_002940624.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002940625.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: bar:GBAA5125 L-lactate dehydrogenase YP_002940626.1 PFAM: PEGA domain protein; KEGG: ret:RHE_PE00129 hypothetical protein YP_002940627.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gsu:GSU3407 hypothetical protein YP_002940628.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH0372 two-component response regulator YP_002940629.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bsu:BSU13260 hypothetical protein YP_002940630.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: baa:BA_0825 ribosomal protein S1-like RNA-binding domain YP_002940631.1 PFAM: Pyruvate kinase barrel; KEGG: hypothetical protein ; K00873 pyruvate kinase YP_002940632.1 PFAM: protein of unknown function DUF129; KEGG: rpb:RPB_4408 hypothetical protein YP_002940633.1 PFAM: Heavy metal transport/detoxification protein YP_002940634.1 KEGG: neu:NE1602 general secretion pathway protein G YP_002940635.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein YP_002940636.1 KEGG: sat:SYN_02543 PAS sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_002940637.1 PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: glo:Glov_2392 NAD/NADP octopine/nopaline dehydrogenase YP_002940638.1 KEGG: dde:Dde_3086 hypothetical protein YP_002940639.1 PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; phosphoribosylglycinamide synthetase; KEGG: ank:AnaeK_1410 D-alanine--D-alanine ligase YP_002940641.1 PFAM: Patatin; KEGG: swp:swp_4746 patatin YP_002940642.1 PFAM: GTP-binding protein HSR1-related; KEGG: bha:BH2476 hypothetical protein YP_002940643.1 PFAM: beta-lactamase domain protein; KEGG: swd:Swoo_1375 beta-lactamase domain-containing protein YP_002940644.1 PFAM: major facilitator superfamily MFS_1; KEGG: sew:SeSA_A1649 major facilitator superfamily MFS_1 YP_002940645.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: psb:Psyr_2921 ADP-ribosylglycohydrolase YP_002940646.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: sat:SYN_02526 malate/L-lactate dehydrogenase YP_002940647.1 PFAM: diacylglycerol kinase catalytic region YP_002940648.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hap:HAPS_1868 hydroxypyruvate isomerase YP_002940649.1 PFAM: extracellular solute-binding protein family 1; KEGG: bpa:BPP4347 extracellular solute-binding protein YP_002940650.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00301 sugar ABC transporter, permease protein YP_002940651.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1077 glycerol-3-phosphate ABC transporter (permease) YP_002940652.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: similar to predicted protein YP_002940653.1 PFAM: sugar-binding domain protein; KEGG: bha:BH0780 transcriptional regulator YP_002940654.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: dvm:DvMF_1751 predicted phospho-2-dehydro-3-deoxyheptonate aldolase YP_002940657.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; KEGG: bha:BH3771 hypothetical protein YP_002940658.1 KEGG: dal:Dalk_0251 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; 2-hydroxyglutaryl-CoA dehydratase D-component YP_002940659.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dal:Dalk_3223 2-hydroxyglutaryl-CoA dehydratase D-component YP_002940660.1 PFAM: metallophosphoesterase; KEGG: ecd:ECDH10B_0144 phosphatase YP_002940661.1 TIGRFAM: glutaredoxin-like protein, YruB-family; PFAM: glutaredoxin; KEGG: nis:NIS_1512 glutaredoxin YP_002940662.1 KEGG: gbm:Gbem_4017 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_002940663.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: ftn:FTN_0685 galactokinase YP_002940664.1 PFAM: basic membrane lipoprotein; KEGG: dps:DP0677 hypothetical protein YP_002940665.1 PFAM: inner-membrane translocator; KEGG: dat:HRM2_06330 RbsC1 YP_002940666.1 PFAM: inner-membrane translocator; KEGG: mmw:Mmwyl1_1924 inner-membrane translocator YP_002940667.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: baa:BA_4398 simple sugar transport system ATP-binding protein YP_002940668.1 PFAM: PspC domain protein; KEGG: bar:GBAA4739 hypothetical protein YP_002940670.1 PFAM: cobalamin B12-binding domain protein; KEGG: rfr:Rfer_3887 cobalamin B12-binding YP_002940671.1 PFAM: D-Lysine 56-aminomutase alpha subunit; KEGG: rfr:Rfer_3888 D-lysine 5,6-aminomutase alpha subunit YP_002940672.1 PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; KEGG: aca:ACP_2271 MutS2 family protein YP_002940673.1 KEGG: rfr:Rfer_3889 hypothetical protein YP_002940674.1 PFAM: MaoC domain protein dehydratase; KEGG: psa:PST_2962 enoyl-CoA hydratase, R-specific YP_002940675.1 KEGG: baa:BA_2804 lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_002940676.1 KEGG: rfr:Rfer_3890 zinc-binding alcohol dehydrogenase YP_002940677.1 PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 hypothetical protein YP_002940678.1 PFAM: thioesterase superfamily protein; KEGG: mxa:MXAN_4385 beta-alanyl-CoA:ammonia lyase YP_002940679.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: ajs:Ajs_2160 methyltransferase type 11 YP_002940680.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002940681.1 KEGG: baa:BA_1722 chalcone and stilbene synthases, C-terminal domain; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_002940682.1 TIGRFAM: enoyl-(acyl-carrier-protein) reductase II; PFAM: 2-nitropropane dioxygenase NPD; KEGG: oxidoreductase, 2-nitropropane dioxygenase family protein ; K02371 enoyl- YP_002940683.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pca:Pcar_1437 malonyl CoA-acyl carrier protein transacylase YP_002940684.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: afw:Anae109_2736 acyl carrier protein YP_002940685.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: gsu:GSU1605 3-oxoacyl-(acyl-carrier-protein) synthase II YP_002940686.1 KEGG: pca:Pcar_2756 hypothetical protein YP_002940687.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: hypothetical protein YP_002940688.1 KEGG: rlt:Rleg2_6232 hypothetical protein YP_002940689.1 PFAM: peptidase M24; KEGG: bha:BH0491 hypothetical protein YP_002940690.1 KEGG: bha:BH0491 hypothetical protein YP_002940691.1 PFAM: glycosidase PH1107-related; KEGG: sat:SYN_01903 cytoplasmic protein YP_002940692.1 KEGG: sus:Acid_0995 hypothetical protein YP_002940693.1 KEGG: hypothetical protein YP_002940694.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ara:Arad_14120 myo-inositol catabolism protein YP_002940695.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ade:Adeh_4137 ABC transporter, ATPase subunit YP_002940696.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00137 sugar ABC transporter, permease protein YP_002940697.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_5252 ABC transporter membrane spanning protein (sugar) YP_002940698.1 PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_1296 multiple sugar transport system substrate-binding protein YP_002940699.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: hap:HAPS_1534 myoinositol 2-dehydrogenase with oxidoreductase domain YP_002940700.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hap:HAPS_1533 myoinositol catabolism protein with xylose isomerase domain (2-keto-myo-inositol dehydratase) YP_002940701.1 PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: baa:BA_3005 thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_002940702.1 PFAM: Myo-inositol catabolism IolB domain protein; KEGG: baa:BA_3009 hypothetical protein predicted by GeneMark YP_002940703.1 KEGG: mmw:Mmwyl1_3080 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_002940704.1 PFAM: Transketolase domain protein; Transketolase central region; KEGG: efe:EFER_0870 carbohydrate degradation enzyme YP_002940705.1 PFAM: Transketolase domain protein; KEGG: efe:EFER_0869 carbohydrate degradation enzyme YP_002940706.1 KEGG: gbm:Gbem_0565 hypothetical protein YP_002940707.1 PFAM: phosphoglycerate kinase; KEGG: scl:sce7349 phosphoglycerate kinase YP_002940708.1 KEGG: ajs:Ajs_2680 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase YP_002940709.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: hiq:CGSHiGG_05790 ribokinase YP_002940710.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cko:CKO_02994 hypothetical protein YP_002940712.1 KEGG: aba:Acid345_1818 hypothetical protein YP_002940713.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: tcx:Tcr_1069 protein-L-isoaspartate O-methyltransferase YP_002940714.1 KEGG: sbn:Sbal195_1477 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region YP_002940715.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: aca:ACP_2625 TldD/PmbA family protein YP_002940716.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sil:SPO3077 TldD/PmbA family protein YP_002940717.1 PFAM: beta-lactamase domain protein; KEGG: metallo-beta-lactamase superfamily protein YP_002940718.1 KEGG: pap:PSPA7_5383 hypothetical protein YP_002940719.1 PFAM: protein of unknown function DUF218; KEGG: nmu:Nmul_A0343 hypothetical protein YP_002940720.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: nis:NIS_0508 glycerophosphoryl diester phosphodiesterase YP_002940722.1 PFAM: FAD dependent oxidoreductase; KEGG: ank:AnaeK_1379 FAD dependent oxidoreductase YP_002940723.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: aca:ACP_2709 delta-1-pyrroline-5-carboxylate dehydrogenase YP_002940724.1 KEGG: hypothetical LOC100001051 YP_002940725.1 PFAM: phosphofructokinase; KEGG: noc:Noc_2846 6-phosphofructokinase YP_002940726.1 KEGG: dal:Dalk_4664 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; Metal-dependent hydrolase HDOD; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_002940727.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dal:Dalk_1601 response regulator receiver protein YP_002940728.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppd:Ppro_2725 PAS/PAC sensor signal transduction histidine kinase YP_002940729.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_2875 integrase catalytic subunit YP_002940730.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: atc:AGR_L_50 hypothetical protein YP_002940731.1 SMART: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator YP_002940732.1 TIGRFAM: dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bsu:BSU29980 dipeptidase PepV YP_002940733.1 PFAM: Nucleotidyl transferase; KEGG: sat:SYN_01031 mannose-1-phosphate guanylyltransferase YP_002940734.1 KEGG: afw:Anae109_2240 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein YP_002940735.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dat:HRM2_37390 predicted two-component system transcriptional regulator YP_002940737.1 KEGG: sat:SYN_02132 transcriptional regulator YP_002940738.1 KEGG: baa:BA_1688 UvrD-helicase, UvrD/REP helicase YP_002940739.1 PFAM: UvrD/REP helicase; KEGG: sfu:Sfum_0502 UvrD/REP helicase YP_002940740.1 PFAM: membrane-flanked domain; KEGG: scl:sce0976 hypothetical protein YP_002940741.1 PFAM: Abortive infection protein; KEGG: sdn:Sden_1909 abortive infection protein YP_002940742.1 PFAM: transcriptional regulator PadR family protein; KEGG: dat:HRM2_38900 transcriptional regulator (PadR family protein) YP_002940744.1 KEGG: scl:sce4297 Beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1 YP_002940745.1 PFAM: glycosyl transferase group 1; KEGG: bsu:BSU30910 spore coat protein YP_002940746.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1866 sugar transport system (permease) (binding protein dependent transporter) YP_002940747.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce3058 sugar ABC transporter, permease protein YP_002940748.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 hypothetical protein YP_002940749.1 TIGRFAM: beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmr:PMI0289 beta-phosphoglucomutase YP_002940750.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bar:GBAA0664 ribose operon repressor YP_002940751.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2340 transport protein YP_002940753.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: amc:MADE_01366 hypothetical maturase YP_002940754.1 PFAM: transposase mutator type; KEGG: par:Psyc_0534 transposase mutator family protein YP_002940755.1 PFAM: protein of unknown function UPF0027; KEGG: net:Neut_0880 hypothetical protein YP_002940756.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: atc:AGR_L_50 hypothetical protein YP_002940757.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_2875 integrase catalytic subunit YP_002940759.1 PFAM: Radical SAM domain protein; KEGG: gur:Gura_3559 radical SAM domain-containing protein YP_002940760.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: atc:AGR_L_50 hypothetical protein YP_002940761.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_2875 integrase catalytic subunit YP_002940763.1 KEGG: tdn:Suden_1026 periplasmic copper-binding YP_002940764.1 KEGG: hypothetical protein YP_002940765.1 KEGG: im:7151086; si:ch211-250g4.3 ; K11498 centromeric protein E YP_002940767.1 PFAM: plasmid stabilization system; KEGG: noc:Noc_0433 hypothetical protein YP_002940768.1 PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: csa:Csal_2857 pyrrolo-quinoline quinone YP_002940769.1 KEGG: pol:Bpro_4221 lipase transmembrane protein YP_002940772.1 KEGG: hypothetical protein YP_002940773.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5220 short-chain dehydrogenase/reductase SDR YP_002940774.1 PFAM: major facilitator superfamily MFS_1; KEGG: nam:NAMH_0796 major facilitator superfamily MFS_1 YP_002940775.1 KEGG: bha:BH2593 hypothetical protein YP_002940776.1 PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A2267 sucrose-phosphate phosphatase YP_002940777.1 PFAM: PfkB domain protein; KEGG: bar:GBAA0752 fructokinase YP_002940778.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_0230 binding-protein-dependent transport systems inner membrane component YP_002940779.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_0229 binding-protein-dependent transport systems inner membrane component YP_002940780.1 PFAM: extracellular solute-binding protein family 1; KEGG: pna:Pnap_0227 extracellular solute-binding protein YP_002940781.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: bha:BH1553 DeoR family transcriptional regulator YP_002940782.1 KEGG: mxa:MXAN_1978 hypothetical protein YP_002940783.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xfm:Xfasm12_1602 pantothenase YP_002940784.1 PFAM: zinc finger SWIM domain protein; KEGG: pca:Pcar_0899 hypothetical protein YP_002940785.1 PFAM: Radical SAM domain protein; KEGG: ppd:Ppro_0182 radical SAM domain-containing protein YP_002940786.1 KEGG: noc:Noc_1356 hypothetical protein YP_002940787.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_2297 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_002940788.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin YP_002940789.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase YP_002940790.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bmj:BMULJ_05226 Cu2+-exporting ATPase YP_002940791.1 PFAM: protein of unknown function DUF156; KEGG: abu:Abu_0479 hypothetical protein YP_002940792.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_3768 acetyltransferase YP_002940793.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein YP_002940794.1 KEGG: dvu:DVU0687 aldehyde:ferredoxin oxidoreductase, tungsten-containing, PFAM: Aldehyde ferredoxin oxidoreductase ; aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_002940795.1 KEGG: similar to golgi autoantigen, golgin subfamily a, 4 YP_002940799.1 KEGG: glo:Glov_0986 hypothetical protein YP_002940800.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_0483 ATPase YP_002940804.1 KEGG: baa:BA_1280 hypothetical protein YP_002940806.1 PFAM: peptidase C1A papain; cellulosome protein dockerin type I; SMART: peptidase C1A papain; KEGG: similar to cathepsin L preproprotein YP_002940807.1 PFAM: conserved hypothetical protein; KEGG: maq:Maqu_3008 hypothetical protein YP_002940808.1 PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_0862 extracellular ligand-binding receptor YP_002940809.1 PFAM: inner-membrane translocator; KEGG: dds:Ddes_1066 inner-membrane translocator YP_002940810.1 PFAM: inner-membrane translocator; KEGG: btr:Btr_1146 permease protein of ABC transporter YP_002940811.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bqu:BQ06320 high-affinity branched-chain amino acid transport, ATP-binding protein YP_002940812.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dds:Ddes_1069 ABC transporter related YP_002940813.1 KEGG: sfu:Sfum_0197 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_002940814.1 PFAM: glycosyl transferase family 2; KEGG: mms:mma_2647 haemin storage system, HmsR protein YP_002940815.1 PFAM: glycosyl transferase family 2; KEGG: hac:Hac_1461 glycosyl transferase YP_002940816.1 PFAM: conserved hypothetical protein; KEGG: ilo:IL0119 hypothetical protein YP_002940817.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: hypothetical protein YP_002940818.1 KEGG: bha:BH2234 response regulatory protein (sensory transduction system); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002940819.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: sus:Acid_1294 2',3'-cyclic-nucleotide 2'-phosphodiesterase YP_002940820.1 KEGG: baa:BA_1104 hypothetical protein predicted by GeneMark YP_002940821.1 PFAM: protein of unknown function DUF990; KEGG: reu:Reut_A1067 hypothetical protein YP_002940822.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: baa:BA_1103 ABC transporter YP_002940823.1 PFAM: carbon starvation protein CstA; KEGG: dat:HRM2_21730 CstA YP_002940824.1 PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; KEGG: baa:BA_0549 response regulator receiver domain YP_002940825.1 PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; KEGG: baa:BA_0550 histidine kinase-like ATPases YP_002940827.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dde:Dde_2560 3-Cys thioredoxin peroxidase / 1-Cys peroxiredoxin YP_002940828.1 PFAM: transcriptional regulator PadR family protein; KEGG: baa:BA_1851 MarR family YP_002940829.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dal:Dalk_0299 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002940830.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sat:SYN_01173 radical SAM superfamily protein YP_002940831.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_43830 ferredoxin YP_002940832.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sat:SYN_01179 dinitrogenase iron-molybdenum cofactor protein YP_002940833.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dat:HRM2_42470 hypothetical protein YP_002940834.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0747 MinD family ATPase YP_002940835.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0576 cobyrinic acid ac-diamide synthase YP_002940836.1 KEGG: sat:SYN_01170 cytoplasmic protein YP_002940837.1 KEGG: hypothetical protein LOC100030415 YP_002940838.1 PFAM: Inorganic pyrophosphatase; KEGG: bha:BH1604 inorganic pyrophosphatase YP_002940839.1 PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: mag:amb2500 HD-GYP domain-containing protein YP_002940840.1 KEGG: rfr:Rfer_3391 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; PAC repeat-containing protein; PAS domain containing protein YP_002940842.1 PFAM: Integrase catalytic region; KEGG: bja:bll1898 transposase YP_002940843.1 PFAM: transposase mutator type; KEGG: sun:SUN_2453 transposase YP_002940845.1 KEGG: sfu:Sfum_3308 conserved hypothetical cytosolic protein YP_002940846.1 KEGG: Fhad1; forkhead-associated (FHA) phosphopeptide binding domain 1 YP_002940847.1 PFAM: transposase mutator type; KEGG: par:Psyc_0534 transposase mutator family protein YP_002940848.1 PFAM: peptidase M48 Ste24p; KEGG: dal:Dalk_2050 peptidase M48 Ste24p YP_002940849.1 PFAM: LemA family protein; KEGG: aeh:Mlg_1468 LemA family protein YP_002940850.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bar:GBAA5192 phosphatase YP_002940851.1 KEGG: hypothetical protein YP_002940852.1 KEGG: GD12145 gene product from transcript GD12145-RA YP_002940853.1 KEGG: glo:Glov_0132 hypothetical protein YP_002940854.1 KEGG: glo:Glov_0131 hypothetical protein YP_002940855.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pub:SAR11_0812 ATP-binding component of ABC transporter YP_002940856.1 PFAM: ABC-2 type transporter; KEGG: GM12733 gene product from transcript GM12733-RA YP_002940859.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002940860.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sus:Acid_2924 hypothetical protein YP_002940861.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: dal:Dalk_3564 Crp/Fnr family transcriptional regulator YP_002940862.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: geo:Geob_1003 Crp/Fnr family transcriptional regulator YP_002940863.1 KEGG: glo:Glov_0131 hypothetical protein YP_002940864.1 PFAM: Fe-S cluster domain protein; KEGG: glo:Glov_0132 hypothetical protein YP_002940865.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sus:Acid_7574 hypothetical protein YP_002940867.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_0013 daunorubicin resistance ABC transporter ATP-binding subunit YP_002940868.1 PFAM: ABC-2 type transporter; KEGG: dps:DP1542 hypothetical protein YP_002940869.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU05950 hypothetical protein YP_002940871.1 KEGG: neu:NE1602 general secretion pathway protein G YP_002940873.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; WD40 domain protein beta Propeller; BAAT/Acyl-CoA thioester hydrolase; KEGG: nmu:Nmul_A2303 peptidase S9, prolyl oligopeptidase active site region YP_002940874.1 PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bsu:BSU10840 LacI family transcription regulator YP_002940875.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1244 hypothetical protein YP_002940876.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1245 hypothetical protein YP_002940877.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1246 hypothetical protein YP_002940878.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cja:CJA_0732 oligo-1,6-glucosidase, , glu13A YP_002940879.1 PFAM: Hyaluronidase; KEGG: hypothetical protein LOC100145437 YP_002940880.1 PFAM: ROK family protein; KEGG: bha:BH1425 glucose kinase YP_002940882.1 PFAM: protein of unknown function DUF187; KEGG: mxa:MXAN_2624 lipoprotein YP_002940883.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0260 sugar ABC transporter permease YP_002940884.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0261 sugar ABC transporter permease protein YP_002940885.1 PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_2897 sugar ABC transporter periplasmic sugar-binding protein YP_002940886.1 PFAM: FAD dependent oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: tbd:Tbd_1475 hypothetical protein YP_002940887.1 PFAM: N-acetylmannosamine-6-phosphate epimerase; KEGG: ent:Ent638_3230 N-acetylmannosamine-6-phosphate 2-epimerase YP_002940888.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: apa:APP7_0748 HTH-type transcriptional regulator YP_002940889.1 PFAM: sugar isomerase (SIS); KEGG: rlt:Rleg2_4761 sugar isomerase (SIS) YP_002940890.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH2121 hypothetical protein YP_002940891.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppd:Ppro_2349 major facilitator transporter YP_002940893.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sbp:Sbal223_3996 phosphoglycolate phosphatase YP_002940894.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: baa:BA_0747 Peptidase_S9, prolyl oligopeptidase family YP_002940895.1 PFAM: NUDIX hydrolase; KEGG: baa:BA_3089 NUDIX, MutT-like domain YP_002940896.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_1698 streptothricin acetyltransferase YP_002940897.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC4054 sodium ABC transporter ATP-binding protein YP_002940898.1 KEGG: aca:ACP_2665 hypothetical protein YP_002940899.1 TIGRFAM: cysteinyl-tRNA synthetase; PFAM: TM1410 hypothetical-related protein; KEGG: mgm:Mmc1_3272 cysteinyl-tRNA synthetase YP_002940900.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sek:SSPA3912 hypothetical protein YP_002940902.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: slo:Shew_1870 LacI family transcription regulator YP_002940903.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: bha:BH3691 hypothetical protein YP_002940904.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH3690 sugar transport system (sugar-binding protein) YP_002940905.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3689 sugar transport system (permease) YP_002940906.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3688 sugar transport system (permease) YP_002940907.1 KEGG: hypothetical protein YP_002940908.1 PFAM: protein of unknown function DUF401; Citrate transporter; KEGG: gsu:GSU1012 hypothetical protein YP_002940909.1 KEGG: gur:Gura_2929 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002940911.1 KEGG: dal:Dalk_4241 hypothetical protein YP_002940912.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bha:BH1089 hypothetical protein YP_002940913.1 KEGG: bsu:BSU09250 hypothetical protein YP_002940914.1 PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: MFS family transporter: sugar YP_002940915.1 KEGG: dol:Dole_0430 hypothetical protein YP_002940916.1 KEGG: tcx:Tcr_2112 hypothetical protein YP_002940917.1 KEGG: sat:SYN_00711 hypothetical protein YP_002940919.1 KEGG: dol:Dole_2515 glycosyl transferase group 1 YP_002940920.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: baa:BA_4693 multiple sugar transport system ATP-binding protein YP_002940921.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ara:Arad_9760 sugar ABC transporter YP_002940922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ara:Arad_9761 sugar ABC transporter YP_002940923.1 PFAM: extracellular solute-binding protein family 1; KEGG: ara:Arad_9763 hypothetical protein YP_002940924.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bsu:BSU10840 LacI family transcription regulator YP_002940927.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bha:BH3008 hypothetical protein YP_002940928.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sfu:Sfum_3896 isocitrate dehydrogenase, NADP-dependent YP_002940929.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_002940930.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_002940931.1 KEGG: bha:BH3160 methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase YP_002940932.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: ftn:FTN_0114 pyrimidine reductase/pyrimidine deaminase YP_002940933.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002940934.1 TIGRFAM: GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: gme:Gmet_1626 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002940935.1 KEGG: baa:BA_4792 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_002940936.1 KEGG: gbm:Gbem_3173 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002940937.1 PFAM: major facilitator superfamily MFS_1; nucleoside:H symporter; KEGG: sfr:Sfri_2666 major facilitator superfamily MFS_1 YP_002940938.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein YP_002940939.1 PFAM: Integrase catalytic region; KEGG: ypy:YPK_3925 integrase catalytic region YP_002940941.1 KEGG: neu:NE1602 general secretion pathway protein G YP_002940942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dal:Dalk_4126 GCN5-related N-acetyltransferase YP_002940943.1 PFAM: Desulfoferrodoxin Dfx domain protein; KEGG: sfu:Sfum_3891 desulfoferrodoxin YP_002940946.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: amc:MADE_01366 hypothetical maturase YP_002940947.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: bha:BH1042 sugar fermentation stimulation protein YP_002940948.1 PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce1382 hypothetical protein YP_002940949.1 PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: spl:Spea_3677 hypothetical protein YP_002940950.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bha:BH0948 bacterioferritin comigratory protein YP_002940951.1 PFAM: basic membrane lipoprotein; KEGG: bov:BOV_A0007 Bmp family lipoprotein YP_002940952.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: baa:BA_4398 simple sugar transport system ATP-binding protein YP_002940953.1 PFAM: inner-membrane translocator; KEGG: bmt:BSUIS_B0010 hypothetical protein YP_002940954.1 PFAM: inner-membrane translocator; KEGG: bmt:BSUIS_B0009 hypothetical protein YP_002940955.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: eum:ECUMN_0745 ribonucleoside hydrolase 1 YP_002940956.1 PFAM: purine or other phosphorylase family 1; KEGG: ses:SARI_03742 hypothetical protein YP_002940957.1 PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: baa:BA_0017 arsenical pump membrane protein YP_002940958.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: xfn:XfasM23_1261 addiction module antitoxin YP_002940960.1 KEGG: cbd:CBUD_1375 hypothetical ATPase YP_002940961.1 PFAM: metallophosphoesterase; KEGG: sus:Acid_3560 metallophosphoesterase YP_002940962.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sus:Acid_0850 DNA-directed DNA polymerase YP_002940963.1 PFAM: aminoglycoside phosphotransferase; KEGG: scl:sce5395 aminoglycoside phosphotransferase YP_002940965.1 PFAM: protein of unknown function DUF1568; KEGG: aba:Acid345_2776 protein of unknown function DUF1568 YP_002940966.1 PFAM: protein of unknown function DUF324 YP_002940968.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: sat:SYN_02249 hypothetical protein YP_002940969.1 TIGRFAM: CRISPR-associated protein, Csx11 family YP_002940970.1 PFAM: protein of unknown function DUF324 YP_002940971.1 KEGG: dal:Dalk_4194 transposase IS4 family protein YP_002940972.1 PFAM: metallophosphoesterase; KEGG: spl:Spea_3025 metallophosphoesterase YP_002940973.1 KEGG: aca:ACP_3267 hypothetical protein YP_002940974.1 PFAM: protein of unknown function DUF1568; KEGG: aba:Acid345_2776 protein of unknown function DUF1568 YP_002940975.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_00015 transcriptional regulator YP_002940977.1 KEGG: bha:BH3998 transposase (25) YP_002940978.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bha:BH3999 transposase (26) YP_002940979.1 KEGG: wsu:WS2189 UDP-N-acetylglucosamine 2-epimerase WbpI YP_002940980.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: hch:HCH_05266 sialic acid synthase YP_002940981.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase YP_002940982.1 PFAM: polysaccharide biosynthesis protein; KEGG: vsp:VS_0223 capsular polysaccharide repeating unit transporter CpsL YP_002940983.1 KEGG: abu:Abu_0045 asparagine synthetase (glutamine-hydrolyzing) YP_002940984.1 KEGG: hch:HCH_05270 hypothetical protein YP_002940986.1 KEGG: dol:Dole_1825 glycosyl transferase group 1 YP_002940987.1 PFAM: glycosyl transferase group 1; KEGG: dps:DPPB77 related to glycosyltransferase YP_002940988.1 TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: sde:Sde_0131 undecaprenyl-phosphate galactosephosphotransferase YP_002940989.1 KEGG: sus:Acid_7477 hypothetical protein YP_002940991.1 KEGG: bha:BH3998 transposase (25) YP_002940992.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bha:BH3999 transposase (26) YP_002940993.1 KEGG: azc:AZC_0130 PilT protein YP_002940994.1 PFAM: S23 ribosomal protein; KEGG: tbd:Tbd_0653 hypothetical protein YP_002940995.1 PFAM: Domain of unknown function DUF1814; KEGG: sat:SYN_01915 cytoplasmic protein YP_002940996.1 KEGG: sat:SYN_01914 transcriptional regulator YP_002940998.1 PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: sat:SYN_01513 ATPase YP_002940999.1 PFAM: ATPase; KEGG: mmw:Mmwyl1_2441 hypothetical protein YP_002941000.1 KEGG: ilo:IL0650 acetyltransferase YP_002941001.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_002941005.1 KEGG: rpi:Rpic_3170 plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein YP_002941006.1 PFAM: plasmid maintenance system killer YP_002941009.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: ppr:PBPRB0807 maturase YP_002941010.1 TIGRFAM: prevent-host-death family protein; KEGG: geo:Geob_2073 prevent-host-death family protein YP_002941011.1 PFAM: PilT protein domain protein; KEGG: dol:Dole_0924 nucleic acid binding protein YP_002941012.1 PFAM: Domain of unknown function DUF1814; KEGG: sat:SYN_01915 cytoplasmic protein YP_002941013.1 KEGG: sat:SYN_01914 transcriptional regulator YP_002941015.1 PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: gme:Gmet_2667 DUF234 DEXX-box ATPase YP_002941016.1 PFAM: S23 ribosomal protein; KEGG: xca:xccb100_0546 hypothetical protein YP_002941018.1 PFAM: protein of unknown function DUF955; KEGG: bja:bll7220 hypothetical protein YP_002941019.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: swi:Swit_4067 helix-turn-helix domain-containing protein YP_002941021.1 KEGG: sus:Acid_7477 hypothetical protein YP_002941023.1 PFAM: PilT protein domain protein; KEGG: azc:AZC_0130 PilT protein YP_002941027.1 KEGG: dat:HRM2_49130 hypothetical protein YP_002941028.1 KEGG: Viral A-type inclusion protein repeat containing protein YP_002941030.1 KEGG: viral A-type inclusion protein YP_002941034.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: ppr:PBPRB0807 maturase YP_002941035.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cha:CHAB381_0232 flavodoxin YP_002941036.1 KEGG: rpe:RPE_2061 hypothetical protein YP_002941038.1 KEGG: glo:Glov_2771 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3 YP_002941039.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_1597 ABC transporter, ATP-binding protein YP_002941040.1 PFAM: ABC-2 type transporter; KEGG: dal:Dalk_2048 ABC-2 type transporter YP_002941041.1 PFAM: ABC-2 type transporter; KEGG: dal:Dalk_2048 ABC-2 type transporter YP_002941042.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mrd:Mrad2831_3363 cysteine synthase A YP_002941043.1 TIGRFAM: serine O-acetyltransferase; KEGG: pca:Pcar_1862 serine O-acetyltransferase YP_002941045.1 PFAM: protein of unknown function UPF0118; KEGG: rty:RT0621 permease YP_002941046.1 PFAM: regulatory protein TetR; KEGG: ypb:YPTS_1293 TetR family transcriptional regulator YP_002941052.1 PFAM: Peptidase M23; 3D domain protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: hypothetical protein YP_002941053.1 KEGG: bsu:BSU15250 hypothetical protein YP_002941054.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: swi:Swit_0045 histone family protein DNA-binding protein YP_002941055.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: bvi:Bcep1808_0314 transposase IS116/IS110/IS902 family protein YP_002941056.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: baa:BA_3922 hypothetical protein YP_002941057.1 PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; KEGG: bha:BH0874 alkaline phosphatase YP_002941058.1 KEGG: spc:Sputcn32_1453 hypothetical protein YP_002941059.1 KEGG: bxe:Bxe_B0648 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_002941060.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tcx:Tcr_2180 PAS/PAC sensor hybrid histidine kinase YP_002941062.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: vpa:VP2488 phosphoglucomutase/phosphomannomutase YP_002941063.1 PFAM: Nucleotidyl transferase; KEGG: dps:DP1737 UDP-N-acetylglucosamine pyrophosphorylase YP_002941064.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cha:CHAB381_1620 biotin/lipoyl attachment YP_002941066.1 PFAM: carboxyl transferase; KEGG: dal:Dalk_3780 propionyl-CoA carboxylase YP_002941067.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bha:BH1468 hypothetical protein YP_002941068.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: aca:ACP_1023 LAO/AO transport system ATPase YP_002941069.1 PFAM: cobalamin B12-binding domain protein; KEGG: aba:Acid345_1432 methylmalonyl-CoA mutase YP_002941070.1 KEGG: gur:Gura_0654 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_002941071.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein YP_002941072.1 PFAM: transposase mutator type; KEGG: par:Psyc_0534 transposase mutator family protein YP_002941073.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: glo:Glov_0470 radical SAM domain protein YP_002941074.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: glo:Glov_0669 UDP-N-acetylmuramate/alanine ligase YP_002941075.1 KEGG: bha:BH2565 N-acetylglucosaminyl transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28 YP_002941076.1 PFAM: cell cycle protein; KEGG: rpr:RP280 rod shape-determining protein RodA (RodA) YP_002941077.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: mfa:Mfla_2271 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002941078.1 KEGG: baa:BA_4523 glycosyl transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4 YP_002941079.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: aba:Acid345_3633 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_002941080.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: bsu:BSU15180 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002941081.1 TIGRFAM: heat-inducible transcription repressor HrcA; KEGG: bha:BH1344 heat-inducible transcription repressor YP_002941082.1 PFAM: GrpE protein; KEGG: fph:Fphi_1402 co-chaperone GrpE YP_002941083.1 KEGG: bha:BH1348 heat-shock protein (activation of DnaK); TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_002941084.1 PFAM: protein of unknown function DUF161; KEGG: bha:BH3604 hypothetical protein YP_002941085.1 PFAM: peptidase M22 glycoprotease; KEGG: sat:SYN_00914 M22 family non-proteolytic peptidase YP_002941086.1 PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: tgr:Tgr7_2009 HhH-GPD family protein YP_002941087.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: mxa:MXAN_4219 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase YP_002941088.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: eba:ebA5735 hypothetical protein YP_002941089.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vsp:VS_II0222 ABC transporter: transmembrane protein; Maltooligosaccharide uptake YP_002941090.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00441 maltose transporter membrane protein YP_002941091.1 PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_00440 maltose ABC transporter periplasmic protein YP_002941092.1 PFAM: carboxylase; pyruvate carboxyltransferase; KEGG: mmw:Mmwyl1_3925 pyruvate carboxylase subunit B YP_002941093.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002941095.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: dde:Dde_1833 hypothetical protein YP_002941096.1 PFAM: Amidohydrolase 3; KEGG: bar:GBAA4894 hypothetical protein YP_002941097.1 PFAM: Indigoidine synthase A family protein; KEGG: mno:Mnod_1045 indigoidine synthase A family protein YP_002941098.1 PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein YP_002941099.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sus:Acid_0039 glutamate dehydrogenase (NADP) YP_002941100.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002941101.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: bsu:BSU16620 hypothetical protein YP_002941102.1 KEGG: sus:Acid_7033 Zn-dependent hydrolase of the beta-lactamase fold-like protein YP_002941103.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: aha:AHA_2848 phosphodiesterase YP_002941104.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: thiamine pyrophosphokinase ; K00949 thiamine pyrophosphokinase YP_002941105.1 PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor; KEGG: sat:SYN_00945 RNA polymerase sigma-54 factor YP_002941106.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: ppd:Ppro_2259 carbohydrate kinase, YjeF related protein YP_002941108.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: RNA-metabolising metallo-beta-lactamase family protein YP_002941109.1 KEGG: dal:Dalk_0153 Na+/glutamate symporter-like protein YP_002941110.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: hypothetical protein YP_002941114.1 PFAM: GCN5-related N-acetyltransferase; KEGG: NAT8; N-acetyltransferase 8 (GCN5-related, ) YP_002941115.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002941116.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002941117.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1078 glycerol-3-phosphate ABC transporter (permease) YP_002941118.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_A2329 ABC-type transporter, permease component: CUT1 family YP_002941119.1 PFAM: extracellular solute-binding protein family 1; KEGG: bar:GBAA0569 glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein YP_002941120.1 PFAM: Integrase catalytic region; KEGG: bja:bll1898 transposase YP_002941122.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sfu:Sfum_2832 IstB domain protein ATP-binding protein YP_002941123.1 PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: sfu:Sfum_2833 integrase, catalytic region YP_002941124.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: psp:PSPPH_1194 heavy metal sensor histidine kinase YP_002941125.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gsu:GSU0451 DNA-binding response regulator YP_002941127.1 KEGG: mxa:MXAN_3691 hypothetical protein YP_002941128.1 this enzyme from Pyrococcus has carbamoyl phosphate synthetase activity even though the enzyme shows sequence and structural similarity to carbamate kinase; this enzyme using carbate and ATP to synthesize carbamoyl phosphate which may be a favorable reaction at the extreme temperatures these organisms live under YP_002941129.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_002941130.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002941131.1 KEGG: bha:BH0687 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; protein of unknown function Met10 YP_002941132.1 PFAM: inositol monophosphatase; KEGG: similar to AGAP006570-PA ; K01092 myo-inositol-1(or 4)-monophosphatase YP_002941133.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: mmr:Mmar10_1504 cadherin YP_002941134.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: baa:BA_4843 PTA_PTB, phosphate acetyl/butaryl transferase YP_002941135.1 PFAM: thiamineS protein YP_002941136.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mgm:Mmc1_1921 serine/threonine protein kinase YP_002941137.1 PFAM: Polyprenyl synthetase; KEGG: bhe:BH15260 geranyltranstransferase (farnesyl-diphosphate synthase) YP_002941138.1 PFAM: protein of unknown function DUF151; KEGG: aca:ACP_0464 hypothetical protein YP_002941139.1 KEGG: baa:BA_2745 phosphate acyltransferases; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_002941140.1 TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; ExsB family protein; KEGG: cbg:CbuG_0830 thiamine biosynthesis protein YP_002941141.1 KEGG: dal:Dalk_2751 TPR repeat-containing protein YP_002941142.1 KEGG: MGC138914; hypothetical LOC512219 YP_002941143.1 PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mxa:MXAN_6449 B12 binding/radical SAM domain protein YP_002941144.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cjd:JJD26997_0671 carbon-nitrogen hydrolase YP_002941145.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: sfu:Sfum_0425 translation initiation factor IF-3 YP_002941146.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: Os06g0647100; hypothetical protein YP_002941147.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002941148.1 PFAM: OsmC family protein; KEGG: pnu:Pnuc_1887 OsmC family protein YP_002941149.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sat:SYN_01185 iron-sulfur cluster assembly/repair protein YP_002941150.1 KEGG: aba:Acid345_1175 translation initiation factor 2B subunit I family (IF-2BI); TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_002941151.1 KEGG: baa:BA_3251 alpha amylase, catalytic domain; TIGRFAM: pullulanase, type I; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain YP_002941152.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002941153.1 TIGRFAM: uracil phosphoribosyltransferase; KEGG: baa:BA_0411 phosphoribosyl transferase domain YP_002941154.1 PFAM: glycoside hydrolase family 57; glycoside hydrolase starch-binding; KEGG: gsu:GSU3255 hypothetical protein YP_002941155.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002941156.1 KEGG: bha:BH2484 signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_002941157.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: glo:Glov_2450 ribosomal protein S16 YP_002941158.1 KEGG: gme:Gmet_2870 KH, type 1 YP_002941159.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: pfl:PFL_1095 16S rRNA-processing protein YP_002941160.1 KEGG: gur:Gura_3760 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_002941161.1 KEGG: gur:Gura_3759 hypothetical protein YP_002941162.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: bha:BH2478 50S ribosomal protein L19 YP_002941163.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: bav:BAV1130 signal peptidase I YP_002941164.1 PFAM: protein of unknown function DUF198; KEGG: pca:Pcar_2981 GTP cyclohydrolase YP_002941165.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: hypothetical protein YP_002941166.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: geo:Geob_1497 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_002941167.1 PFAM: peptidase M50; KEGG: dps:DP0062 hypothetical protein YP_002941168.1 KEGG: gur:Gura_0070 APHP domain-containing protein YP_002941169.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: nam:NAMH_1550 MgpA protein YP_002941170.1 TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: baa:BA_4766 Mtap_PNP, phosphorylase family 2 YP_002941171.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: afw:Anae109_2736 acyl carrier protein YP_002941172.1 KEGG: mxa:MXAN_5912 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_002941175.1 PFAM: PEGA domain protein; KEGG: aba:Acid345_0037 serine/threonine protein kinase YP_002941176.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: msu:MS0391 RsuA protein YP_002941177.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: bha:BH1240 single-strand DNA-specific exonuclease YP_002941179.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: pca:Pcar_1049 rod shape-determining protein MreB YP_002941180.1 PFAM: protein of unknown function DUF368; KEGG: mmw:Mmwyl1_1306 hypothetical protein YP_002941181.1 KEGG: maq:Maqu_3152 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_002941182.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: baa:BA_0086 uncharacterized protein family (UPF0051) YP_002941183.1 PFAM: SufBD protein; KEGG: xop:PXO_01977 FeS assembly protein SufD YP_002941184.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: bsu:BSU32690 cysteine desulfurase YP_002941185.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: pub:SAR11_0743 NifU-like protein YP_002941186.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pca:Pcar_0201 cold shock protein YP_002941187.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002941188.1 SMART: von Willebrand factor type A; KEGG: pin:Ping_3152 hypothetical protein YP_002941190.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: hypothetical protein YP_002941191.1 PFAM: PEGA domain protein; von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: aba:Acid345_2058 von Willebrand factor, type A YP_002941192.1 SMART: Tetratricopeptide domain protein; KEGG: TPR Domain containing protein YP_002941193.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: aeh:Mlg_1971 preprotein translocase subunit SecG YP_002941194.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002941195.1 PFAM: S-layer domain protein; KEGG: viral A-type inclusion protein YP_002941197.1 KEGG: pne:Pnec_1234 permease YjgP/YjgQ family protein YP_002941198.1 KEGG: bha:BH3998 transposase (25) YP_002941199.1 PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: sfu:Sfum_2833 integrase, catalytic region YP_002941200.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sfu:Sfum_2832 IstB domain protein ATP-binding protein YP_002941201.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bha:BH3999 transposase (26) YP_002941203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1324 oligopeptide ABC transporter, permease protein YP_002941204.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL3796 transmembrane component of ABC transporter YP_002941205.1 PFAM: extracellular solute-binding protein family 5; KEGG: sus:Acid_3456 extracellular solute-binding protein YP_002941206.1 KEGG: bba:Bd2190 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002941207.1 KEGG: baa:BA_1731 oligopeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002941208.1 PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: similar to Alanyl-tRNA synthetase domain containing 1 ; K07050 YP_002941209.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: sat:SYN_00640 replicative DNA helicase YP_002941210.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3570 ABC transporter, ATPase subunit YP_002941211.1 KEGG: hypothetical protein YP_002941212.1 KEGG: GOLGA2; golgi autoantigen, golgin subfamily a, 2 YP_002941213.1 PFAM: O-antigen polymerase; KEGG: vfm:VFMJ11_A1152 secreted polysaccharide polymerase YP_002941214.1 PFAM: protein of unknown function UPF0047; KEGG: mgm:Mmc1_3648 protein of unknown function UPF0047 YP_002941215.1 KEGG: tmz:Tmz1t_2034 cell division topological specificity factor MinE YP_002941216.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_1281 septum site-determining protein MinD YP_002941217.1 KEGG: glo:Glov_1090 protein of unknown function Met10 YP_002941218.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pca:Pcar_2506 alcohol dehydrogenase, class IV YP_002941219.1 PFAM: polysaccharide pyruvyl transferase; KEGG: baa:BA_1468 hypothetical protein YP_002941220.1 catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM YP_002941221.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: ppd:Ppro_1379 DNA internalization-related competence protein ComEC/Rec2 YP_002941222.1 PFAM: ferric-uptake regulator; KEGG: bha:BH1527 ferric uptake regulation protein YP_002941223.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002941224.1 PFAM: protein of unknown function DUF150; KEGG: gur:Gura_1898 hypothetical protein YP_002941225.1 KEGG: tdn:Suden_1346 sulfonate/nitrate transport system substrate-binding protein YP_002941226.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA2114 ABC transporter, permease protein YP_002941227.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aci:ACIAD0034 alkanesulfonate ABC transporter ATP-binding protein YP_002941228.1 PFAM: protein of unknown function DUF177; KEGG: sat:SYN_02362 zinc finger protein YP_002941229.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002941230.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002941231.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002941232.1 PFAM: Iojap-related protein; KEGG: aci:ACIAD3076 hypothetical protein YP_002941233.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002941234.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002941235.1 PFAM: Exonuclease VII small subunit; KEGG: bha:BH2782 exodeoxyribonuclease VII (small subunit) YP_002941236.1 PFAM: Exonuclease VII large subunit; KEGG: ecg:E2348C_2784 exonuclease VII, large subunit YP_002941237.1 KEGG: bha:BH1689 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_002941238.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: protein of unknown function DUF795; KEGG: bsu:BSU15060 hypothetical protein YP_002941239.1 KEGG: bar:GBAA4006 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein YP_002941240.1 KEGG: jan:Jann_3293 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002941241.1 KEGG: bar:GBAA4733 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002941242.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0135 ABC transporter permease protein YP_002941243.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_0066 binding-protein-dependent transport systems inner membrane component YP_002941244.1 PFAM: extracellular solute-binding protein family 5; KEGG: apl:APL_0063 periplasmic dipeptide transport protein YP_002941245.1 PFAM: inner-membrane translocator; KEGG: baa:BA_4395 branched-chain amino acid transport system / permease component YP_002941246.1 PFAM: inner-membrane translocator; KEGG: sme:SM_b20126 sugar ABC transporter permease protein YP_002941247.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU31550 hypothetical protein YP_002941248.1 PFAM: basic membrane lipoprotein; KEGG: sfu:Sfum_2515 basic membrane lipoprotein YP_002941251.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: mxa:MXAN_4159 uridine kinase YP_002941252.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002941254.1 KEGG: dat:HRM2_18430 hypothetical protein YP_002941255.1 KEGG: geo:Geob_0920 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002941256.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: lip:LI0373 phosphatidylglycerophosphate synthase YP_002941257.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: sfu:Sfum_2529 2'-5' RNA ligase YP_002941258.1 KEGG: tcx:Tcr_1592 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_002941259.1 PFAM: regulatory protein RecX; KEGG: bha:BH0924 recombination regulator RecX YP_002941260.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_002941261.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dal:Dalk_4273 tRNA(Ile)-lysidine synthetase YP_002941262.1 KEGG: baa:BA_0654 peptidase_M41, peptidase family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002941264.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_0418 radical SAM family protein YP_002941265.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sat:SYN_00981 response regulator YP_002941266.1 KEGG: bha:BH3156 two-component sensor histidine kinase involved in phosphate regulation; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002941267.1 KEGG: baa:BA_4765 glycosyl transferase family, a/b domain; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_002941268.1 KEGG: hypothetical protein YP_002941269.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: nis:NIS_0272 elongation factor G YP_002941270.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pat:Patl_2810 alpha amylase, catalytic region YP_002941271.1 PFAM: protein of unknown function DUF503; KEGG: dat:HRM2_07640 hypothetical protein YP_002941272.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bha:BH1327 hypothetical protein YP_002941274.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bsu:BSU35520 hypothetical protein YP_002941275.1 PFAM: protein of unknown function DUF214; KEGG: mfa:Mfla_2095 LolC/E family lipoprotein releasing system, transmembrane protein YP_002941276.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abu:Abu_0440 ABC transporter, ATP-binding protein YP_002941277.1 PFAM: GAF domain protein; KEGG: aba:Acid345_2653 GAF sensor protein YP_002941278.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mag:amb1388 diaminopimelate decarboxylase YP_002941279.1 KEGG: sun:SUN_0585 hypothetical protein YP_002941280.1 PFAM: Rhomboid family protein; KEGG: aba:Acid345_1881 rhomboid-like protein YP_002941282.1 PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: bsu:BSU15640 hypothetical protein YP_002941283.1 KEGG: sus:Acid_7097 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_002941284.1 PFAM: NUDIX hydrolase; KEGG: bsu:BSU17400 hypothetical protein YP_002941285.1 PFAM: CBS domain containing protein; Polynucleotide adenylyltransferase region; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; KEGG: gsu:GSU1581 polyA polymerase family protein YP_002941286.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: glo:Glov_1166 two component, sigma54 specific, transcriptional regulator, Fis family YP_002941287.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: spc:Sputcn32_2579 PAS/PAC sensor signal transduction histidine kinase YP_002941288.1 PFAM: protein of unknown function DUF62; KEGG: sfu:Sfum_1405 protein of unknown function DUF62 YP_002941289.1 PFAM: protein of unknown function DUF123; KEGG: tgr:Tgr7_0278 protein of unknown function DUF123 YP_002941290.1 PFAM: alanine racemase domain protein; KEGG: mlo:mlr5700 hypothetical protein YP_002941291.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: hypothetical protein YP_002941292.1 PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: baa:BA_0017 arsenical pump membrane protein YP_002941293.1 KEGG: sat:SYN_01706 endopeptidase; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_002941294.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_3426 ABC transporter-related protein YP_002941295.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: iron ion transport system, inner membrane component ; K02015 iron complex transport system permease protein YP_002941296.1 PFAM: periplasmic binding protein; KEGG: sat:SYN_01423 ABC-type transporter cobalamide binding protein YP_002941297.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: pca:Pcar_1304 DNA mismatch repair enzyme YP_002941298.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: afw:Anae109_2230 RNA methyltransferase YP_002941299.1 KEGG: baa:BA_0679 RIBOc, ribonuclease III family YP_002941300.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002941301.1 PFAM: phosphatidate cytidylyltransferase; KEGG: baa:BA_4430 cytidylyltrans, Phosphatidate cytidylyltransferase YP_002941302.1 KEGG: sat:SYN_00918 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_002941303.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002941304.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: lpc:LPC_1485 transmembrane protein YajC, preprotein translocase subunit YP_002941305.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: rce:RC1_1042 protein-export membrane protein SecD YP_002941306.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: nam:NAMH_1481 protein-export membrane protein SecF YP_002941307.1 SMART: phospholipase D/Transphosphatidylase; KEGG: ypp:YPDSF_4129 endonuclease YP_002941308.1 KEGG: cbd:CBUD_0922 glutamine-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002941309.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: hypothetical protein YP_002941311.1 KEGG: azo:azo2712 GGDEF/PAS/PAC-domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein YP_002941312.1 KEGG: rpt:Rpal_5127 alpha/beta hydrolase fold YP_002941313.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002941314.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_002941315.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_002941316.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: bha:BH2816 glycine cleavage system aminomethyltransferase T YP_002941318.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002941319.1 KEGG: bha:BH3163 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_002941320.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002941321.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002941323.1 PFAM: glycosyl transferase family 2; KEGG: nis:NIS_1251 glycosyl transferase YP_002941324.1 PFAM: glycosyl transferase group 1; KEGG: abu:Abu_0691 glycosyltransferase YP_002941325.1 KEGG: aav:Aave_0953 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_002941326.1 PFAM: glycosyl transferase group 1; KEGG: net:Neut_1096 glycosyl transferase, group 1 YP_002941327.1 PFAM: glycosyl transferase group 1; KEGG: eci:UTI89_C2303 galactosyltransferase WbgM YP_002941328.1 KEGG: baa:BA_1468 hypothetical protein YP_002941329.1 PFAM: virulence factor MVIN family protein; polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: sat:SYN_00104 virulence factor protein YP_002941330.1 PFAM: regulatory protein MarR; KEGG: dvm:DvMF_1831 MarR family transcriptional regulator YP_002941331.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: aba:Acid345_4343 DegT/DnrJ/EryC1/StrS aminotransferase YP_002941332.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sus:Acid_5707 WxcM domain-containing protein YP_002941333.1 KEGG: mxa:MXAN_2689 lipopolysaccharide biosynthesis protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase ; 6-phosphogluconate dehydrogenase NAD-binding YP_002941334.1 PFAM: S23 ribosomal protein; KEGG: aca:ACP_1829 hypothetical protein YP_002941335.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eli:ELI_13345 lipopolysaccharide biosynthesis protein YP_002941337.1 PFAM: class II aldolase/adducin family protein; KEGG: ppd:Ppro_2543 class II aldolase/adducin family protein YP_002941338.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: gbm:Gbem_1307 ribosomal protein S15 YP_002941339.1 KEGG: bsu:BSU16690 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; RNA binding S1 domain protein; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_002941340.1 PFAM: peptidase M16 domain protein; KEGG: bha:BH2405 processing protease YP_002941341.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rce:RC1_2464 acetyltransferase, GNAT family YP_002941342.1 KEGG: cju:C8J_0274 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_002941343.1 PFAM: cyclic nucleotide-binding; KEGG: hypothetical protein YP_002941344.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002941345.1 KEGG: hpy:HP0176 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_002941346.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gme:Gmet_0890 smf protein YP_002941347.1 heat shock protein involved in degradation of misfolded proteins YP_002941348.1 heat shock protein involved in degradation of misfolded proteins YP_002941349.1 KEGG: pca:Pcar_2199 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; RimK domain protein ATP-grasp YP_002941350.1 KEGG: nam:NAMH_0110 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_002941351.1 KEGG: sat:SYN_02192 HD-superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region YP_002941352.1 KEGG: baa:BA_2575 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_002941353.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: gsu:GSU2234 50S ribosomal protein L28 YP_002941354.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pca:Pcar_2947 HAD superfamily hydrolase YP_002941356.1 KEGG: bar:GBAA2728 pullulanase, TIGRFAM: pullulanase, type I; PFAM: pullanase-associated protein; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002941357.1 PFAM: molybdopterin binding domain; KEGG: dvm:DvMF_1339 molybdenum cofactor synthesis domain protein YP_002941358.1 PFAM: deoxynucleoside kinase; KEGG: mxa:MXAN_2054 deoxynucleoside kinase family protein YP_002941359.1 PFAM: deoxynucleoside kinase; KEGG: mxa:MXAN_3331 deoxynucleoside kinase family protein YP_002941360.1 PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: bsu:BSU39940 hypothetical protein YP_002941361.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pha:PSHAa2154 efflux pump YP_002941362.1 KEGG: pca:Pcar_2387 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_002941363.1 PFAM: Integrase catalytic region; KEGG: bja:bll1898 transposase YP_002941364.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: aha:AHA_2800 amino acid ABC transporter, periplasmic amino acid-binding protein YP_002941365.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU2650 amino acid ABC transporter, permease protein YP_002941366.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccv:CCV52592_0494 glutamate/aspartate ABC transporter, ATP-binding protein YP_002941367.1 KEGG: sus:Acid_3412 hypothetical protein YP_002941368.1 KEGG: ilo:IL0572 hypothetical protein YP_002941369.1 PFAM: aldo/keto reductase; KEGG: hypothetical protein YP_002941370.1 KEGG: ade:Adeh_2788 NAD synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase YP_002941373.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: cjj:CJJ81176_0545 CrcB protein YP_002941374.1 PFAM: protein of unknown function DUF190; KEGG: ppd:Ppro_0834 hypothetical protein YP_002941375.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: baa:BA_2835 rotamase, PPIC-type PPIASE domain YP_002941378.1 KEGG: bsu:BSU27710 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase YP_002941379.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: mch:Mchl_2134 formiminotransferase-cyclodeaminase YP_002941380.1 KEGG: dps:DP1973 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_002941381.1 KEGG: dvm:DvMF_0761 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002941382.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bar:GBAA4686 Maf-like protein YP_002941383.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: tmz:Tmz1t_0773 heptaprenyl diphosphate synthase component I YP_002941384.1 PFAM: protein of unknown function DUF1312; KEGG: tmz:Tmz1t_0772 hypothetical protein YP_002941385.1 PFAM: ApbE family lipoprotein; KEGG: pca:Pcar_0035 hypothetical protein YP_002941386.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_0354 radical SAM domain protein YP_002941387.1 PFAM: AMMECR1 domain protein; KEGG: dal:Dalk_3956 AMMECR1 domain protein YP_002941388.1 PFAM: phosphofructokinase; KEGG: mxa:MXAN_6373 6-phosphofructokinase I YP_002941389.1 KEGG: bsu:BSU33610 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_002941390.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: SLEI family protein YP_002941391.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: dal:Dalk_1245 peptidase A24A domain protein YP_002941392.1 PFAM: helix-turn-helix domain protein YP_002941395.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002941396.1 Catalyzes the phosphorylation of UMP to UDP YP_002941397.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: dat:HRM2_17110 Tsf YP_002941398.1 KEGG: bha:BH2589 lipopolysaccharide core biosynthesis; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_002941399.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvm:DvMF_2591 BadM/Rrf2 family transcriptional regulator YP_002941400.1 KEGG: gsu:GSU1132 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_002941401.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002941402.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002941403.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002941404.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002941405.1 PFAM: NUDIX hydrolase; KEGG: bha:BH1524 hypothetical protein YP_002941406.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: similar to CG8360 CG8360-PA YP_002941407.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: dal:Dalk_3618 protein of unknown function DUF21 YP_002941408.1 PFAM: protein of unknown function DUF163; KEGG: geo:Geob_0611 protein of unknown function DUF163 YP_002941409.1 KEGG: baa:BA_4193 ATZ_TRZ, Chlorohydrolase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3 YP_002941410.1 KEGG: aba:Acid345_2130 formiminotransferase-like; TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase domain protein YP_002941411.1 PFAM: cell cycle protein; KEGG: bpn:BPEN_316 rod shape-determining protein YP_002941412.1 PFAM: PP-loop domain protein; KEGG: dvm:DvMF_2330 PP-loop domain protein YP_002941413.1 KEGG: har:HEAR1318 hypothetical protein YP_002941414.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002941415.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ilo:IL2015 small-conductance mechanosensitive channel YP_002941416.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: bsu:BSU22440 transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase YP_002941417.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: bha:BH0073 hypothetical protein YP_002941419.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: rec:RHECIAT_CH0001450 SsrA-binding (tmRNA-binding) protein YP_002941420.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002941421.1 KEGG: bsu:BSU00530 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_002941422.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002941423.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002941424.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: gur:Gura_0122 UDP-N-acetylglucosamine pyrophosphorylase YP_002941425.1 PFAM: RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: pat:Patl_2945 Holliday junction DNA helicase RuvA YP_002941426.1 KEGG: sfu:Sfum_1671 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_002941427.1 TIGRFAM: valyl-tRNA synthetase; KEGG: sat:SYN_02886 valyl-tRNA synthetase YP_002941428.1 PFAM: protein of unknown function DUF1385; KEGG: geo:Geob_0684 protein of unknown function DUF1385 YP_002941429.1 PFAM: Stage V sporulation protein S; KEGG: bsu:BSU16980 required for dehydratation of the spore core and assembly of the coat (stage V sporulation) YP_002941430.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sfu:Sfum_1166 2-oxoglutarate ferredoxin oxidoreductase subunit alpha YP_002941431.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP2322 2-ketoglutarate oxidoreductase subunit delta YP_002941432.1 KEGG: dat:HRM2_38660 OadB3; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_002941433.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002941434.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bba:Bd0267 hypothetical protein YP_002941435.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gme:Gmet_3146 peptidylprolyl isomerase, FKBP-type YP_002941436.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mxa:MXAN_0313 mandelate racemase/muconate lactonizing enzyme family protein YP_002941437.1 PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: sml:Smlt0460 transglutaminase YP_002941438.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002941439.1 PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sat:SYN_02176 Fe-S oxidoreductase YP_002941440.1 KEGG: baa:BA_0663 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_002941442.1 KEGG: sat:SYN_01651 radical SAM superfamily protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002941443.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dat:HRM2_33330 Fe-S oxidoreductase family protein YP_002941445.1 PFAM: OsmC family protein; KEGG: shw:Sputw3181_1218 OsmC family protein YP_002941446.1 PFAM: aldo/keto reductase; KEGG: azc:AZC_2900 aldo/keto reductase YP_002941447.1 KEGG: bam:Bamb_0115 hypothetical protein YP_002941448.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: ank:AnaeK_4411 polysaccharide biosynthesis protein CapD YP_002941449.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bja:blr3650 polysaccharide biosynthesis protein YP_002941450.1 PFAM: glycosyl transferase family 4; KEGG: sfu:Sfum_3327 glycosyl transferase, family 4 YP_002941451.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: baa:BA_2550 CorA-like Mg2+ transporter protein YP_002941452.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rlt:Rleg2_4737 haloacid dehalogenase, type II YP_002941453.1 PFAM: protein of unknown function DUF201; KEGG: dvm:DvMF_0668 ATP-grasp protein-like protein YP_002941454.1 KEGG: gsu:GSU0049 hypothetical protein YP_002941456.1 PFAM: ribonuclease H; KEGG: nse:NSE_0667 ribonuclease HI YP_002941457.1 PFAM: MOFRL domain protein; KEGG: sfu:Sfum_3915 MOFRL domain protein YP_002941458.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: slo:Shew_2533 gluconate transporter YP_002941459.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: baa:BA_4387 competence-damaged protein YP_002941460.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bsu:BSU36760 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002941461.1 PFAM: Radical SAM domain protein; KEGG: gbm:Gbem_1899 radical SAM domain protein YP_002941464.1 KEGG: ott:OTT_0823 Na+/H+ antiporter subunit YP_002941465.1 KEGG: psa:PST_4209 probable NADH dehydrogenase YP_002941466.1 PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: mgm:Mmc1_2212 monovalent cation/H+ antiporter subunit B YP_002941467.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dal:Dalk_4921 NADH-ubiquinone oxidoreductase chain 4L YP_002941468.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: wol:WD1107 monovalent cation/H+ antiporter subunit D YP_002941469.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: baa:BA_2750 DUF194, uncharacterized protein, DegV family COG1307 YP_002941470.1 PFAM: PhoH family protein; KEGG: afw:Anae109_2713 PhoH family protein YP_002941471.1 KEGG: pca:Pcar_1232 HD superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002941472.1 PFAM: protein of unknown function UPF0054; KEGG: dps:DP1605 pyridoxal phosphate biosynthetic protein YP_002941473.1 PFAM: conserved hypothetical protein; KEGG: gur:Gura_1789 hypothetical protein YP_002941474.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: glo:Glov_0872 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002941475.1 PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5508 ISPsy8, transposase OrfA YP_002941476.1 PFAM: Integrase catalytic region; KEGG: cja:CJA_1427 transposase YP_002941477.1 PFAM: DNA polymerase beta domain protein region; KEGG: gbm:Gbem_0754 DNA polymerase beta domain protein region YP_002941478.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: nis:NIS_0139 nucleotidyltransferase, substrate-binding protein YP_002941479.1 KEGG: sfu:Sfum_1845 hypothetical protein YP_002941480.1 TIGRFAM: PAS sensor protein; KEGG: pca:Pcar_0517 PAS domain-containing protein YP_002941481.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pca:Pcar_0518 hypothetical protein YP_002941482.1 KEGG: sat:SYN_01647 NADH-quinone oxidoreductase chain E YP_002941483.1 PFAM: hydrogenase large subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0725 hydrogenase-like YP_002941484.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bha:BH3999 transposase (26) YP_002941485.1 KEGG: bha:BH3998 transposase (25) YP_002941486.1 KEGG: mlo:mll5961 transposase YP_002941487.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: ecm:EcSMS35_2272 ISL3 family transposase YP_002941488.1 KEGG: mxa:MXAN_3747 hypothetical protein YP_002941491.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sbp:Sbal223_2906 metal dependent phosphohydrolase YP_002941495.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_002941496.1 PFAM: NUDIX hydrolase; KEGG: baa:BA_2567 NUDIX, MutT-like domain YP_002941497.1 PFAM: Abortive infection protein; KEGG: baa:BA_1544 hypothetical protein YP_002941498.1 KEGG: dar:Daro_0659 hypothetical protein YP_002941499.1 KEGG: abu:Abu_1405 McrBC catalytic subunit McrC YP_002941500.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_1686 acetyltransferase, GNAT family YP_002941501.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_1190 UbiE/COQ5 methyltransferase YP_002941502.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pau:PA14_08440 short chain alcohol dehydrogenase YP_002941503.1 KEGG: atc:AGR_C_2728 hypothetical protein YP_002941504.1 PFAM: GCN5-related N-acetyltransferase; KEGG: predicted protein YP_002941505.1 PFAM: protein of unknown function DUF500; KEGG: gbm:Gbem_2146 protein of unknown function DUF500 YP_002941506.1 KEGG: mmr:Mmar10_1918 peptidase M1, membrane alanine aminopeptidase YP_002941507.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; peptidase S15; Acetyl xylan esterase; KEGG: bsu:BSU32230 hypothetical protein YP_002941508.1 KEGG: hypothetical protein YP_002941509.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gbm:Gbem_3940 two component, sigma54 specific, transcriptional regulator, fis family YP_002941510.1 PFAM: Integrase catalytic region; KEGG: bja:bll1898 transposase YP_002941511.1 PFAM: Integrase catalytic region; KEGG: bja:bll1898 transposase YP_002941512.1 AS-AR; AsnRS2; similar to asparaginyl-tRNA synthetase but lacking the N-terminal anticodon-binding site; the enzyme from Pyrococcus converts aspartic acid into asparagine YP_002941513.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dat:HRM2_08790 cytochrome-c3 hydrogenase, gamma subunit (electron transfer subunit) YP_002941514.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sat:SYN_00606 glutamate synthase (NADPH) YP_002941515.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: bxe:Bxe_B2763 transposase IS110 YP_002941518.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: baa:BA_0283 DUF194, uncharacterized protein, DegV family COG1307 YP_002941519.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: bsu:BSU22080 hypothetical protein YP_002941520.1 PFAM: inner-membrane translocator; KEGG: smd:Smed_3657 inner-membrane translocator YP_002941521.1 PFAM: inner-membrane translocator; KEGG: smd:Smed_4009 inner-membrane translocator YP_002941522.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7755 sugar ABC transporter, ATP-binding protein YP_002941523.1 KEGG: gbm:Gbem_0927 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_002941524.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002941525.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002941526.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002941527.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002941528.1 KEGG: dal:Dalk_1925 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_002941529.1 KEGG: bha:BH0118 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein YP_002941530.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dal:Dalk_1927 preprotein translocase, SecE subunit YP_002941531.1 TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: mxa:MXAN_3069 ribosomal protein L33 YP_002941532.1 KEGG: bha:BH2510 flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_002941533.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit YP_002941534.1 Essential for recycling GMP and indirectly, cGMP YP_002941535.1 PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein YP_002941536.1 PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: dal:Dalk_1930 YicC domain protein YP_002941537.1 PFAM: aminotransferase class V; KEGG: sfu:Sfum_2683 aminotransferase, class V YP_002941538.1 KEGG: bha:BH0649 NAD-dependent DNA ligase LigA; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1 YP_002941539.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: bsu:BSU04620 4'-phosphopantetheinyl transferase YP_002941540.1 KEGG: bar:GBAA4794 recombination and DNA strand exchange inhibitor protein; TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2 YP_002941541.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: mgm:Mmc1_1772 positive regulator of sigma(E), RseC/MucC YP_002941543.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH0372 two-component response regulator YP_002941544.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: baa:BA_2715 HATPase_c, histidine kinase-, DNA gyrase B-, phytochrome-like ATPase YP_002941545.1 PFAM: protein of unknown function DUF52; KEGG: aba:Acid345_3359 protein of unknown function DUF52 YP_002941546.1 PFAM: type II and III secretion system protein; KEGG: noc:Noc_0251 fimbrial assembly protein PilQ precursor YP_002941551.1 PFAM: type II secretion system protein; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC YP_002941552.1 KEGG: maq:Maqu_0924 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_002941553.1 KEGG: noc:Noc_0002 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_002941554.1 PFAM: Endonuclease V; KEGG: sat:SYN_01952 endonuclease V YP_002941555.1 PFAM: ROK family protein; KEGG: rlt:Rleg2_5489 ROK family protein YP_002941556.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002941557.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002941558.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: zmo:ZMO0542 50S ribosomal protein L17 YP_002941559.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002941560.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002941561.1 PFAM: ribosomal protein S11; KEGG: bar:GBAA0136 30S ribosomal protein S11 YP_002941562.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002941563.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: ribosomal protein L36 family protein ; K02919 large subunit ribosomal protein L36 YP_002941564.1 KEGG: geo:Geob_2784 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_002941565.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sfu:Sfum_1577 methionine aminopeptidase, type I YP_002941566.1 TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: bha:BH0155 adenylate kinase YP_002941567.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002941568.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: baa:BA_0712 ribosomal protein L15 amino terminal region YP_002941569.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: bha:BH0152 50S ribosomal protein L30 YP_002941570.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002941571.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: sus:Acid_5102 50S ribosomal protein L18P YP_002941572.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002941573.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002941574.1 PFAM: ribosomal protein S14; KEGG: nis:NIS_0236 30S ribosomal protein S14 YP_002941575.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002941576.1 KEGG: sfu:Sfum_1566 ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein YP_002941577.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dal:Dalk_1905 ribosomal protein L14 YP_002941578.1 PFAM: ribosomal protein S17; KEGG: afr:AFE_0336 ribosomal protein S17 YP_002941579.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: bha:BH0142 50S ribosomal protein L29 YP_002941580.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002941581.1 KEGG: lip:LI0966 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_002941582.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002941583.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002941584.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002941585.1 PFAM: Ribosomal protein L25/L23; KEGG: dat:HRM2_36240 RplW YP_002941586.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002941587.1 PFAM: ribosomal protein L3; KEGG: gsu:GSU2857 50S ribosomal protein L3 YP_002941588.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: bar:GBAA0109 30S ribosomal protein S10 YP_002941589.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002941590.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002941591.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: nam:NAMH_0183 ribosomal protein S7 YP_002941592.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: lip:LI0942 30S ribosomal protein S12 YP_002941593.1 PFAM: DNA polymerase III delta; KEGG: cff:CFF8240_1130 DNA polymerase III subunit delta YP_002941594.1 PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; KEGG: sat:SYN_01739 division specific D,D-transpeptidase / cell division protein YP_002941596.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: gsu:GSU3077 S-adenosyl-methyltransferase MraW YP_002941597.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_002941598.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002941600.1 KEGG: azc:AZC_3108 hemolysin A; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein YP_002941601.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002941603.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bsu:BSU09310 hypothetical protein YP_002941604.1 PFAM: protein of unknown function UPF0102; KEGG: dal:Dalk_4642 protein of unknown function UPF0102 YP_002941605.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: cla:Cla_0485 glu-tRNAGln amidotransferase, subunit C YP_002941606.1 KEGG: aba:Acid345_0343 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_002941607.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: geo:Geob_1010 glycogen/starch synthase, ADP-glucose type YP_002941608.1 PFAM: beta-lactamase domain protein; KEGG: mes:Meso_2405 beta-lactamase-like YP_002941609.1 PFAM: Bacitracin resistance protein BacA; KEGG: bha:BH0464 undecaprenyl pyrophosphate phosphatase YP_002941610.1 PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: bar:GBAA4917 acetoin utilization protein AcuB YP_002941611.1 KEGG: nam:NAMH_1022 hydrolase YP_002941612.1 PFAM: aminotransferase class I and II; KEGG: nam:NAMH_0822 aspartate aminotransferase YP_002941615.1 PFAM: 2-phosphosulfolactate phosphatase; KEGG: abo:ABO_2222 phosphoric monoester hydrolase YP_002941616.1 PFAM: Phosphoglycerate mutase; KEGG: pmr:PMI3716 probable phosphoglycerate mutase YP_002941617.1 PFAM: DNA polymerase III alpha subunit; KEGG: sus:Acid_0012 DNA polymerase III, alpha subunit YP_002941618.1 KEGG: bha:BH2542 hypothetical protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_002941619.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: oan:Oant_0161 lipoprotein signal peptidase YP_002941620.1 PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein YP_002941621.1 KEGG: ppd:Ppro_0351 radical SAM domain-containing protein YP_002941622.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dal:Dalk_3260 phosphodiesterase, MJ0936 family YP_002941623.1 TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; KEGG: sfu:Sfum_0101 trigger factor YP_002941624.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: bha:BH3589 prolipoprotein diacylglyceryl transferase YP_002941625.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: ftf:FTF1560 HAM1 protein YP_002941626.1 KEGG: bha:BH2502 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_002941627.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: bha:BH2503 ribosome-associated GTPase YP_002941628.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002941629.1 PFAM: NusB/RsmB/TIM44; KEGG: bsu:BSU15740 hypothetical protein YP_002941630.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: bsu:BSU31310 hypothetical protein YP_002941631.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: sus:Acid_1041 6-pyruvoyl tetrahydropterin synthase YP_002941632.1 PFAM: cobalt transport protein; KEGG: baa:BA_0724 cobalt transport protein YP_002941633.1 PFAM: HEAT domain containing protein; KEGG: hypothetical protein YP_002941635.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002941636.1 KEGG: scl:sce7148 hypothetical protein YP_002941637.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0428 ABC transporter related YP_002941638.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: lpc:LPC_2838 outer membrane protein OmpH YP_002941639.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: gur:Gura_0610 D-tyrosyl-tRNA deacylase YP_002941640.1 KEGG: bar:GBAA4637 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002941641.1 PFAM: protein of unknown function DUF81; KEGG: pca:Pcar_3013 hypothetical protein YP_002941643.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ade:Adeh_1687 tyrosine recombinase XerD subunit YP_002941645.1 PFAM: Patatin; KEGG: cti:RALTA_A1947 lipoprotein, esterase of the alpha-beta hydrolase superfamily, patatin-like phospholipase domain YP_002941646.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: acb:A1S_3468 lipoprotein YP_002941648.1 KEGG: abb:ABBFA_003435 hypothetical protein YP_002941651.1 KEGG: vfm:VFMJ11_A0645 hypothetical protein YP_002941652.1 KEGG: vvy:VV1934 hypothetical protein YP_002941653.1 KEGG: dat:HRM2_19160 hypothetical protein YP_002941654.1 KEGG: shn:Shewana3_2240 hypothetical protein YP_002941656.1 KEGG: sfu:Sfum_0410 hypothetical protein YP_002941657.1 PFAM: helicase domain protein; SNF2-related protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicase; KEGG: sfu:Sfum_0411 helicase domain protein YP_002941658.1 PFAM: ROK family protein; KEGG: bha:BH2758 transcriptional repressor of the xylose operon YP_002941659.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00302 sugar ABC transporter, permease protein YP_002941660.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5335 binding-protein-dependent transport systems inner membrane component YP_002941661.1 PFAM: extracellular solute-binding protein family 1; KEGG: spe:Spro_2571 extracellular solute-binding protein YP_002941662.1 PFAM: glycoside hydrolase family 31; KEGG: spq:SPAB_00051 hypothetical protein YP_002941663.1 PFAM: glycoside hydrolase 15-related; KEGG: xac:XAC4082 hypothetical protein YP_002941664.1 KEGG: sun:SUN_0582 hypothetical protein YP_002941666.1 PFAM: Domain of unknown function DUF1814; KEGG: dol:Dole_1847 hypothetical protein YP_002941667.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002176 iron(III) ABC transporter, ATP-binding protein YP_002941668.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4650 binding-protein-dependent transport systems inner membrane component YP_002941669.1 PFAM: extracellular solute-binding protein family 1; KEGG: bmi:BMEA_B0695 ABC transporter iron-binding protein YP_002941670.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: NAGK; N-acetylglucosamine kinase; K00884 N-acetylglucosamine kinase YP_002941671.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bar:GBAA4272 GntR family transcriptional regulator YP_002941672.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_002941673.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH0675 beta-hexosamidase A precursor YP_002941674.1 PFAM: conserved hypothetical protein; KEGG: bsu:BSU01650 hypothetical protein YP_002941675.1 KEGG: dvl:Dvul_0199 NLP/P60 protein YP_002941676.1 PFAM: extracellular solute-binding protein family 1; KEGG: sme:SM_b20971 sugar uptake ABC transporter periplasmic solute-binding protein precursor YP_002941677.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3689 sugar transport system (permease) YP_002941678.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smt:Smal_2681 monosaccharide-transporting ATPase YP_002941679.1 PFAM: protein of unknown function DUF187; KEGG: bsu:BSU18280 hypothetical protein YP_002941680.1 KEGG: rle:RL3795 hypothetical protein YP_002941681.1 PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: bsu:BSU01530 N-acetylmuramoyl-L-alanine amidase YP_002941682.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sfu:Sfum_1372 electron transfer flavoprotein beta-subunit YP_002941683.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: sfu:Sfum_1373 electron transfer flavoprotein, alpha subunit YP_002941684.1 PFAM: FAD linked oxidase domain protein; KEGG: gur:Gura_0648 FAD linked oxidase domain-containing protein YP_002941685.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3847 ABC transporter (permease) YP_002941686.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3846 ABC transporter (permease) YP_002941687.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH3845 ABC transporter (substrate-binding protein) YP_002941688.1 PFAM: ROK family protein; KEGG: bha:BH1094 transcriptional repressor of the xylose operon YP_002941689.1 PFAM: peptidase S41; KEGG: sus:Acid_0918 peptidase S41 YP_002941690.1 PFAM: ATPase; KEGG: sat:SYN_01506 ATPase YP_002941691.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bha:BH2927 maltogenic amylase YP_002941692.1 PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: sat:SYN_01513 ATPase YP_002941693.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: sat:SYN_00104 virulence factor protein YP_002941694.1 PFAM: protein of unknown function DUF296; KEGG: sus:Acid_2059 hypothetical protein YP_002941695.1 PFAM: major facilitator superfamily MFS_1; KEGG: hypothetical protein YP_002941697.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein YP_002941698.1 KEGG: mxa:MXAN_5791 response regulator/GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002941699.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: gur:Gura_2055 PepF/M3 family oligoendopeptidase YP_002941700.1 KEGG: nam:NAMH_1489 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_002941701.1 PFAM: conserved hypothetical protein; KEGG: bha:BH0035 hypothetical protein YP_002941702.1 KEGG: glo:Glov_1616 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_002941703.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002941704.1 TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: pca:Pcar_1333 triosephosphate isomerase YP_002941705.1 KEGG: conserved hypothetical protein YP_002941707.1 KEGG: gme:Gmet_0547 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_002941708.1 PFAM: conserved hypothetical protein; KEGG: bsu:BSU34770 hypothetical protein YP_002941709.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_002941711.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: sus:Acid_4363 protein of unknown function UPF0052 and CofD YP_002941712.1 PFAM: protein of unknown function DUF199; KEGG: bsu:BSU34750 hypothetical protein YP_002941713.1 PFAM: ATP-cone domain protein; KEGG: bsu:BSU29000 transcriptional regulator NrdR YP_002941714.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002941715.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002941716.1 KEGG: dds:Ddes_1088 GatB/YqeY domain-containing protein YP_002941717.1 KEGG: ecf:ECH74115_0831 glutamate mutase MutL YP_002941718.1 KEGG: dat:HRM2_08780 FolA YP_002941721.1 PFAM: Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; RNA methylase; KEGG: gme:Gmet_2876 RNA methylase:methyltransferase small YP_002941722.1 KEGG: ppd:Ppro_1665 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_002941723.1 PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Torsin; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: baa:BA_0670 Clp_N, Clp amino terminal domain YP_002941724.1 TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; KEGG: dat:HRM2_03980 RadA YP_002941725.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_002941726.1 KEGG: Amidohydrolase family protein YP_002941727.1 KEGG: spl:Spea_1424 WecB/TagA/CpsF family glycosyl transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_002941728.1 PFAM: extracellular solute-binding protein family 5; KEGG: mlo:mlr6670 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein YP_002941729.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3643 dipeptide ABC transporter (permease) YP_002941730.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bar:GBAA4731 oligopeptide ABC transporter, oligopeptide-binding protein YP_002941731.1 KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002941732.1 KEGG: bha:BH3645 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002941733.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mgm:Mmc1_2205 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002941734.1 Catalyzes the transfer of electrons from NADH to quinone YP_002941735.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: mgm:Mmc1_2207 NADH dehydrogenase (ubiquinone), 30 kDa subunit YP_002941736.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_002941737.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: mgm:Mmc1_2209 membrane bound protein complex subunit MbxM YP_002941738.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mgm:Mmc1_2210 NADH dehydrogenase (quinone) YP_002941739.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: wol:WD1107 monovalent cation/H+ antiporter subunit D YP_002941740.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mgm:Mmc1_2211 membrane bound protein complex subunit MbxG YP_002941741.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_002941742.1 KEGG: ecn:Ecaj_0558 monovalent cation/H+ antiporter subunit B YP_002941743.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_002941744.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_002941745.1 PFAM: cation antiporter; KEGG: mgm:Mmc1_2216 membrane bound protein complex subunit MbxA YP_002941746.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sat:SYN_01437 cold shock protein YP_002941747.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bsu:BSU11110 hypothetical protein YP_002941748.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bcj:BCAL2029 hydroxydechloroatrazine ethylaminohydrolase YP_002941749.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: Os07g0657900; hypothetical protein YP_002941750.1 KEGG: wsu:WS0062 hypothetical protein YP_002941751.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases YP_002941752.1 PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: spe:Spro_3190 ornithine carbamoyltransferase YP_002941753.1 PFAM: amidohydrolase; KEGG: D-hydantoinase ; K01465 dihydroorotase YP_002941754.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: Amidohydrolase family protein YP_002941755.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dihydroorotate dehydrogenase family protein YP_002941756.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pfo:Pfl01_2313 L-threonine synthase YP_002941757.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: sfu:Sfum_2011 (2Fe-2S)-binding domain protein YP_002941758.1 KEGG: mlo:mlr0093 hypothetical protein YP_002941759.1 KEGG: sus:Acid_2901 hypothetical protein YP_002941760.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: dat:HRM2_37990 two-component fusion protein (N:molybdopterin dehydrogenase, FAD-binding domain-C:carbon monoxide dehydrogenase medium chain) YP_002941761.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: dps:DP3068 4-hydroxybenzoyl-CoA reductase HcrB YP_002941762.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: reu:Reut_B3596 ferredoxin:(2Fe-2S)-binding YP_002941763.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dps:DP3066 4-hydroxybenzoyl-CoA reductase HcrA YP_002941764.1 PFAM: extracellular solute-binding protein family 1; KEGG: aha:AHA_1667 maltose ABC transporter periplasmic protein YP_002941765.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_3987 sugar ABC transporter (permease protein) YP_002941766.1 PFAM: protein of unknown function DUF364; KEGG: dps:DP2969 hypothetical protein YP_002941767.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: Pyridoxal-phosphate dependent enzyme family protein YP_002941768.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: afr:AFE_0775 xanthine dehydrogenase, molybdenum-binding subunit YP_002941769.1 KEGG: dal:Dalk_3756 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase YP_002941770.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002941771.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: vfm:VFMJ11_0394 endoribonuclease L-PSP YP_002941773.1 PFAM: peptidase C11 clostripain; KEGG: gme:Gmet_1209 hypothetical protein YP_002941774.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: nam:NAMH_1232 C-terminal fumarate hydratase, class I YP_002941775.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; KEGG: cha:CHAB381_0023 fumarate hydratase YP_002941776.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: sus:Acid_1799 PhzF family phenazine biosynthesis protein YP_002941778.1 KEGG: acp:A2cp1_2187 hypothetical protein YP_002941779.1 PFAM: protein of unknown function DUF437; KEGG: bha:BH0816 hypothetical protein YP_002941780.1 PFAM: GCN5-related N-acetyltransferase; KEGG: similar to CG5783 CG5783-PA YP_002941781.1 PFAM: alpha/beta hydrolase fold; KEGG: dol:Dole_2799 alpha/beta hydrolase fold YP_002941782.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: dal:Dalk_0550 riboflavin biosynthesis protein RibF YP_002941783.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002941784.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: pat:Patl_1696 ribosome-binding factor A YP_002941785.1 PFAM: Patatin; KEGG: cha:CHAB381_0344 patatin family phospholipase YP_002941786.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: baa:BA_4222 ABC transporter transmembrane region YP_002941787.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: aba:Acid345_2371 ABC transporter, ATPase subunit YP_002941788.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: baa:BA_4971 MMR_HSR1, GTPase of unknown function YP_002941789.1 KEGG: bsu:BSU25260 glycyl-tRNA synthetase subunit beta; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_002941790.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002941791.1 PFAM: Dak phosphatase; KEGG: bsu:BSU15840 hypothetical protein YP_002941792.1 PFAM: protein of unknown function DUF322; KEGG: bha:BH2786 hypothetical protein YP_002941793.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002941794.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: nmu:Nmul_A0357 methenyltetrahydrofolate cyclohydrolase YP_002941795.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: gbe:GbCGDNIH1_0047 formate--tetrahydrofolate ligase YP_002941796.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002941797.1 PFAM: protein of unknown function DUF322; KEGG: hypothetical protein YP_002941798.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002941799.1 PFAM: peptidase M24; creatinase; KEGG: bsu:BSU24460 hypothetical protein YP_002941800.1 This protein performs the mismatch recognition step during the DNA repair process YP_002941801.1 KEGG: afw:Anae109_3421 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_002941802.1 PFAM: protein of unknown function DUF370; KEGG: dvl:Dvul_2085 hypothetical protein YP_002941803.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002941804.1 KEGG: nis:NIS_1493 nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_002941805.1 PFAM: dihydrouridine synthase DuS; KEGG: gme:Gmet_2561 dihydrouridine synthase TIM-barrel protein nifR3 YP_002941806.1 TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: aba:Acid345_3920 L-threonine 3-dehydrogenase YP_002941807.1 KEGG: gbm:Gbem_0049 pyridoxal phosphate-dependent acyltransferase; TIGRFAM: pyridoxal phosphate-dependent acyltransferase ; 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II YP_002941808.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: bha:BH0465 hypothetical protein YP_002941809.1 PFAM: Rubrerythrin; KEGG: dat:HRM2_23150 Rbr2 YP_002941811.1 PFAM: purine or other phosphorylase family 1; KEGG: bha:BH3238 5'-methylthioadenosine/S-adenosylhomocysteine nuclosidase YP_002941812.1 PFAM: histidine triad (HIT) protein; KEGG: tdn:Suden_0868 histidine triad (HIT) protein YP_002941813.1 PFAM: methyltransferase small; KEGG: baa:BA_0688 hypothetical protein YP_002941814.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: baa:BA_0722 ABC transporter YP_002941815.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: baa:BA_0723 ABC transporter YP_002941816.1 PFAM: protein of unknown function DUF554; KEGG: dal:Dalk_2095 protein of unknown function DUF554 YP_002941817.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvm:DvMF_0185 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit YP_002941818.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dat:HRM2_41090 PorA2 YP_002941819.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gsu:GSU3188 rubredoxin YP_002941820.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: gme:Gmet_2613 twin-arginine translocation pathway signal YP_002941821.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dal:Dalk_2742 ribonuclease III YP_002941822.1 PFAM: phosphoadenosine phosphosulfate reductase; ExsB family protein; KEGG: aba:Acid345_2524 NH(3)-dependent NAD(+) synthetase YP_002941823.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: vfi:VF_A0956 hydrolase YP_002941824.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aba:Acid345_2341 apolipoprotein N-acyltransferase YP_002941825.1 PFAM: inositol monophosphatase; KEGG: mxa:MXAN_1914 inositol-1-monophosphatase YP_002941826.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002941827.1 KEGG: glo:Glov_1873 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein YP_002941828.1 PFAM: ferric-uptake regulator; KEGG: sat:SYN_02524 ferric uptake regulator family protein YP_002941831.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: ypg:YpAngola_A3604 RNA polymerase sigma factor RpoE YP_002941832.1 PFAM: peptidase M18 aminopeptidase I; peptidase M20; KEGG: dat:HRM2_30320 peptidase M18 family protein YP_002941833.1 KEGG: gsu:GSU1450 endonuclease III, TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_002941834.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3245 binding-protein-dependent transport systems inner membrane component YP_002941835.1 TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1; KEGG: avi:Avi_4266 ABC transporter substrate binding protein (thiamine) YP_002941836.1 KEGG: bsu:BSU00550 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_002941837.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: nam:NAMH_0844 tRNA modification GTPase TrmE YP_002941839.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dvl:Dvul_0047 pyruvate ferredoxin/flavodoxin oxidoreductase YP_002941840.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: sfu:Sfum_0300 thiamine pyrophosphate enzyme domain protein TPP-binding YP_002941841.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_002941842.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_2310 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002941843.1 KEGG: dat:HRM2_10670 hypothetical protein YP_002941844.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002941845.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: baa:BA_4843 PTA_PTB, phosphate acetyl/butaryl transferase YP_002941846.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002941847.1 PFAM: aminotransferase class I and II; KEGG: bpt:Bpet4860 aminotransferase YP_002941848.1 PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: baa:BA_0017 arsenical pump membrane protein YP_002941849.1 PFAM: aminotransferase class V; KEGG: sus:Acid_1660 phosphoserine aminotransferase / L-aspartate aminotransferase YP_002941850.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: afw:Anae109_2506 D-3-phosphoglycerate dehydrogenase YP_002941851.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvu:DVU0305 ferredoxin II