-- dump date 20240506_002327 -- class Genbank::Contig -- table contig_comment -- id comment NC_014098.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002017.1.REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in ItalyREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: ItalyREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: SporulatingREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 50CREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 50C Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 50C Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 50C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 50C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: AcidophileREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 50C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Acidophile Energy Source :: ChemolithoautotrophREFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 50C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Acidophile Energy Source :: Chemolithoautotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002017.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:49:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,336 CDSs (total) :: 3,258 Genes (coding) :: 3,212 CDSs (with protein) :: 3,212 Genes (RNA) :: 78 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 6 of 46 Pseudo Genes (incomplete) :: 39 of 46 Pseudo Genes (internal stop) :: 3 of 46 Pseudo Genes (multiple problems) :: 2 of 46 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Kyrpidia tusciae T2, DSM 2912 Culture Collection ID :: DSM 2912 GOLD Stamp ID :: Gi02327 Greengenes ID :: 14331 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Solfatara in Italy Isolation Country :: Italy Latitude :: 43.326 Longitude :: 10.498 Oxygen Requirement :: Aerobe Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 50C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Acidophile Energy Source :: Chemolithoautotroph ##Metadata-END## COMPLETENESS: full length.