-- dump date 20140619_122347 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 272621000001 SEQ_END SEQ_END NC_006814.3 1993560 1993560 DR NC_006814.3; contig end 1993560..1993560 Lactobacillus acidophilus NCFM YP_192940.1 CDS dnaA NC_006814.3 31 1398 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 31..1398 Lactobacillus acidophilus NCFM 3252574 YP_192941.1 CDS dnaN NC_006814.3 1576 2706 D DNA polymerase III subunit beta 1576..2706 Lactobacillus acidophilus NCFM 3252571 YP_192942.1 CDS LBA0003 NC_006814.3 2925 3155 D COG2501 Uncharacterized conserved protein; hypothetical protein 2925..3155 Lactobacillus acidophilus NCFM 3252664 YP_192943.1 CDS recF NC_006814.3 3155 4282 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3155..4282 Lactobacillus acidophilus NCFM 3252300 YP_192944.1 CDS gyrB NC_006814.3 4283 6247 D DNA gyrase subunit B 4283..6247 Lactobacillus acidophilus NCFM 3252055 YP_192945.1 CDS gyrA NC_006814.3 6258 8732 D DNA gyrase subunit A 6258..8732 Lactobacillus acidophilus NCFM 3252401 YP_192946.1 CDS rpsF NC_006814.3 8933 9229 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 8933..9229 Lactobacillus acidophilus NCFM 3252918 YP_192947.1 CDS LBA0008 NC_006814.3 9275 9793 D COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 9275..9793 Lactobacillus acidophilus NCFM 3252118 YP_192948.1 CDS rpsR NC_006814.3 9822 10058 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 9822..10058 Lactobacillus acidophilus NCFM 3252908 YP_192949.1 CDS LBA0011 NC_006814.3 10237 12258 D signaling protein 10237..12258 Lactobacillus acidophilus NCFM 3252791 YP_192950.1 CDS rplI NC_006814.3 12271 12726 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 12271..12726 Lactobacillus acidophilus NCFM 3253111 YP_192951.1 CDS dnaB NC_006814.3 12752 14146 D COG0305 Replicative DNA helicase; replicative DNA helicase 12752..14146 Lactobacillus acidophilus NCFM 3252785 YP_192952.1 CDS LBA0014 NC_006814.3 14388 15329 D alkylphosphonate ABC transporter 14388..15329 Lactobacillus acidophilus NCFM 3252865 YP_192953.1 CDS LBA0015 NC_006814.3 15433 16362 D hypothetical protein 15433..16362 Lactobacillus acidophilus NCFM 3252763 YP_192954.1 CDS LBA0016 NC_006814.3 16483 17361 D COG1940 transcriptional regulator-sugar kinase; fructokinase 16483..17361 Lactobacillus acidophilus NCFM 3252120 YP_192955.1 CDS LBA0017 NC_006814.3 17507 17695 D COG3237 Uncharacterized protein conserved in bacteria; general stress response 17507..17695 Lactobacillus acidophilus NCFM 3252563 YP_192956.3 CDS LBA0018 NC_006814.3 17752 18036 R membrane protein complement(17752..18036) Lactobacillus acidophilus NCFM 3252210 YP_192957.1 CDS LBA0019 NC_006814.3 18057 19283 R hypothetical protein complement(18057..19283) Lactobacillus acidophilus NCFM 3252562 YP_192958.1 CDS cadB NC_006814.3 19827 20474 D CadD; cadmium resistance protein 19827..20474 Lactobacillus acidophilus NCFM 3252806 YP_192959.1 CDS cadX NC_006814.3 20491 20844 D cadmium resistance regulatory protein 20491..20844 Lactobacillus acidophilus NCFM 3252138 YP_192960.1 CDS LBA0023 NC_006814.3 21324 22274 R NAD-dependent malic enzyme (malate oxidoreductase); hypothetical protein complement(21324..22274) Lactobacillus acidophilus NCFM 3252838 YP_192961.1 CDS LBA0024 NC_006814.3 22411 22722 D hypothetical protein 22411..22722 Lactobacillus acidophilus NCFM 3252957 YP_192962.1 CDS ftsK NC_006814.3 22722 23798 D FtsK; hypothetical protein; cell division protein 22722..23798 Lactobacillus acidophilus NCFM 3252740 YP_192963.1 CDS LBA0026 NC_006814.3 23795 24325 D hypothetical protein 23795..24325 Lactobacillus acidophilus NCFM 3252579 YP_192964.1 CDS repB NC_006814.3 24511 25452 D replication initiator protein 24511..25452 Lactobacillus acidophilus NCFM 3252985 YP_192965.1 CDS LBA0028 NC_006814.3 25673 25864 D VrlI protein; hypothetical protein 25673..25864 Lactobacillus acidophilus NCFM 3252460 YP_192966.1 CDS LBA0029 NC_006814.3 25928 27163 D hypothetical protein Ljo_1749; integrase 25928..27163 Lactobacillus acidophilus NCFM 3252861 YP_192967.1 CDS LBA0030 NC_006814.3 27424 27639 D COG1912 Uncharacterized conserved protein; hypothetical protein 27424..27639 Lactobacillus acidophilus NCFM 3252302 YP_192968.1 CDS LBA0031 NC_006814.3 27643 28044 D hypothetical protein 27643..28044 Lactobacillus acidophilus NCFM 3252904 YP_192969.1 CDS LBA0032 NC_006814.3 28644 28952 D hypothetical protein 28644..28952 Lactobacillus acidophilus NCFM 3252558 YP_192970.1 CDS LBA0034 NC_006814.3 29358 30182 R COG2746 Aminoglycoside N3'-acetyltransferase; aminoglycoside N3-acetyltransferase complement(29358..30182) Lactobacillus acidophilus NCFM 3253025 YP_192971.1 CDS LBA0035 NC_006814.3 30348 31748 D cytosol non-specific dipeptidase 30348..31748 Lactobacillus acidophilus NCFM 3252280 YP_192972.1 CDS LBA0036 NC_006814.3 31916 33223 D collagen-binding protein Cne precursor; hypothetical protein 31916..33223 Lactobacillus acidophilus NCFM 3252273 YP_192973.1 CDS LBA0037 NC_006814.3 33320 34117 D COG4905 Predicted membrane protein; hypothetical protein 33320..34117 Lactobacillus acidophilus NCFM 3252141 YP_192974.1 CDS LBA0038 NC_006814.3 34136 34699 R COG2096 Uncharacterized conserved protein; cobalamin adenosyltransferase complement(34136..34699) Lactobacillus acidophilus NCFM 3252897 YP_192975.1 CDS LBA0039 NC_006814.3 34699 35223 R hypothetical protein complement(34699..35223) Lactobacillus acidophilus NCFM 3252277 YP_192977.1 CDS LBA0041 NC_006814.3 35642 37876 R ribonucleoside triphosphate reductase complement(35642..37876) Lactobacillus acidophilus NCFM 3252771 YP_192978.1 CDS LBA0043 NC_006814.3 38124 39164 D COG0628 Predicted permease; permease 38124..39164 Lactobacillus acidophilus NCFM 3252790 YP_192979.1 CDS LBA0044 NC_006814.3 39161 39733 D esterase 39161..39733 Lactobacillus acidophilus NCFM 3252888 YP_192980.1 CDS LBA0045 NC_006814.3 40163 41515 D sugar transporter 40163..41515 Lactobacillus acidophilus NCFM 3252772 YP_192981.1 CDS LBA0046 NC_006814.3 41634 41990 R isoleucyl-tRNA synthetase; hypothetical protein complement(41634..41990) Lactobacillus acidophilus NCFM 3252550 YP_192982.1 CDS LBA0047 NC_006814.3 42202 42963 R ABC transporter ATP-binding protein complement(42202..42963) Lactobacillus acidophilus NCFM 3252135 YP_192983.1 CDS LBA0048 NC_006814.3 42960 43856 R ABC transporter membrane spanning permease complement(42960..43856) Lactobacillus acidophilus NCFM 3252849 YP_192984.1 CDS LBA0049 NC_006814.3 43853 44845 R ABC transporter substrate binding protein complement(43853..44845) Lactobacillus acidophilus NCFM 3252436 YP_192985.1 CDS LBA0050 NC_006814.3 45194 45907 D hydrolase 45194..45907 Lactobacillus acidophilus NCFM 3252503 YP_192986.1 CDS LBA0051 NC_006814.3 45976 47895 D GTPase; translation elongation factors 45976..47895 Lactobacillus acidophilus NCFM 3252464 YP_192987.1 CDS LBA0052 NC_006814.3 48016 48834 D hydrolase 48016..48834 Lactobacillus acidophilus NCFM 3252130 YP_192988.1 CDS LBA0053 NC_006814.3 48869 49087 R hypothetical protein complement(48869..49087) Lactobacillus acidophilus NCFM 3252898 YP_192989.1 CDS LBA0054 NC_006814.3 49012 49725 R Endonuclease-Exonuclease-phosphatase; endonuclease-exonuclease-phosphatase complement(49012..49725) Lactobacillus acidophilus NCFM 3252147 YP_192990.1 CDS ldhD NC_006814.3 50079 51128 R D-lactate dehydrogenase complement(50079..51128) Lactobacillus acidophilus NCFM 3252750 YP_192991.1 CDS exoA NC_006814.3 51696 52523 D COG0708 Exonuclease III; exodeoxyribonuclease A 51696..52523 Lactobacillus acidophilus NCFM 3252049 YP_192992.1 CDS gadC NC_006814.3 52583 54025 D GadC; COG0531 Amino acid transporters; glutamategamma-aminobutyrate antiporter 52583..54025 Lactobacillus acidophilus NCFM 3252754 YP_192993.1 CDS LBA0058 NC_006814.3 54086 56920 D phage DEAD box family helicase 54086..56920 Lactobacillus acidophilus NCFM 3252275 YP_192994.1 CDS pbpX NC_006814.3 56949 58073 R PbpX; penicillin-binding protein complement(56949..58073) Lactobacillus acidophilus NCFM 3252674 YP_192995.1 CDS LBA0060 NC_006814.3 58261 58674 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 58261..58674 Lactobacillus acidophilus NCFM 3252932 YP_192996.1 CDS LBA0062 NC_006814.3 65297 65641 D hypothetical protein 65297..65641 Lactobacillus acidophilus NCFM 3252936 YP_192997.1 CDS LBA0063 NC_006814.3 65668 65790 D fumarate reductase flavoprotein subunit 65668..65790 Lactobacillus acidophilus NCFM 3252809 YP_192998.1 CDS LBA0064 NC_006814.3 65956 67146 D fumarate reductase flavoprotein subunit 65956..67146 Lactobacillus acidophilus NCFM 3252948 YP_192999.1 CDS lysR NC_006814.3 67176 67817 R transcriptional regulator complement(67176..67817) Lactobacillus acidophilus NCFM 3252157 YP_193000.1 CDS LBA0066 NC_006814.3 67978 68208 R steroid binding protein complement(67978..68208) Lactobacillus acidophilus NCFM 3252974 YP_193001.1 CDS arbZ NC_006814.3 68304 69173 R phospho-beta-glycosidase complement(68304..69173) Lactobacillus acidophilus NCFM 3252920 YP_193002.1 CDS LBA0068 NC_006814.3 69170 70117 R potential frameshift to 69; glycosyl transferase family protein complement(69170..70117) Lactobacillus acidophilus NCFM 3253018 YP_193003.1 CDS LBA0069 NC_006814.3 70130 71086 R potential frameshift to 68; glucosyl transferase complement(70130..71086) Lactobacillus acidophilus NCFM 3252981 YP_193004.1 CDS arbx NC_006814.3 71116 71952 R glycosyl transferase family protein complement(71116..71952) Lactobacillus acidophilus NCFM 3252885 YP_193005.1 CDS LBA0071 NC_006814.3 72186 72278 R hypothetical protein complement(72186..72278) Lactobacillus acidophilus NCFM 3252152 YP_193006.1 CDS LBA0072 NC_006814.3 72596 73354 R hypothetical protein complement(72596..73354) Lactobacillus acidophilus NCFM 3252658 YP_193007.1 CDS LBA0073 NC_006814.3 73477 73941 D OSJNBa0035I04.2; hypothetical protein 73477..73941 Lactobacillus acidophilus NCFM 3252964 YP_193008.1 CDS LBA0074 NC_006814.3 74379 75971 D ABC transporter bacteriocin 74379..75971 Lactobacillus acidophilus NCFM 3252925 YP_193009.1 CDS LBA0075 NC_006814.3 75973 77565 D ABC transporter bacteriocin 75973..77565 Lactobacillus acidophilus NCFM 3252642 YP_193010.1 CDS LBA0077 NC_006814.3 77542 79248 R transposase complement(77542..79248) Lactobacillus acidophilus NCFM 3252810 YP_193011.1 CDS LBA0078 NC_006814.3 79913 80629 D VicR; COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator 79913..80629 Lactobacillus acidophilus NCFM 3252835 YP_193012.1 CDS LBA0079 NC_006814.3 80698 82554 D VicK; histidine kinase 80698..82554 Lactobacillus acidophilus NCFM 3252854 YP_193013.1 CDS yycH NC_006814.3 82535 83893 D hypothetical protein 82535..83893 Lactobacillus acidophilus NCFM 3252866 YP_193014.1 CDS yycI NC_006814.3 83894 84718 D hypothetical protein 83894..84718 Lactobacillus acidophilus NCFM 3252219 YP_193015.1 CDS LBA0082 NC_006814.3 84727 85524 D hypothetical protein 84727..85524 Lactobacillus acidophilus NCFM 3252993 YP_193016.1 CDS htrA NC_006814.3 85570 86841 D HtrA; Serine protease do-like HtrA; heat shock related serine protease 85570..86841 Lactobacillus acidophilus NCFM 3252346 YP_193017.1 CDS LBA0084 NC_006814.3 87312 87791 D SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 87312..87791 Lactobacillus acidophilus NCFM 3252357 YP_193018.1 CDS LBA0085 NC_006814.3 87843 88658 D COG1396 Predicted transcriptional regulators; transcriptional regulator 87843..88658 Lactobacillus acidophilus NCFM 3252367 YP_193019.1 CDS LBA0086 NC_006814.3 88840 89115 D membrane protein; hypothetical protein 88840..89115 Lactobacillus acidophilus NCFM 3252373 YP_193020.1 CDS LBA0087 NC_006814.3 89158 90615 D protease 89158..90615 Lactobacillus acidophilus NCFM 3252386 YP_193021.1 CDS LBA0088 NC_006814.3 90778 90882 D hypothetical protein 90778..90882 Lactobacillus acidophilus NCFM 3252393 YP_193022.1 CDS LBA0089 NC_006814.3 90994 91185 D hypothetical protein 90994..91185 Lactobacillus acidophilus NCFM 3252394 YP_193023.1 CDS LBA0091 NC_006814.3 91251 91940 D hypothetical protein 91251..91940 Lactobacillus acidophilus NCFM 3252417 YP_193024.1 CDS LBA0092 NC_006814.3 91987 92868 R Proline iminopeptidase (PIP) (Prolyl aminopeptidase) (PAP); prolyl aminopeptidase complement(91987..92868) Lactobacillus acidophilus NCFM 3252419 YP_193025.1 CDS LBA0093 NC_006814.3 92877 93530 R ABC transporter permease complement(92877..93530) Lactobacillus acidophilus NCFM 3252427 YP_193026.1 CDS LBA0094 NC_006814.3 93533 94882 R Binding; COG1122 ABC-type cobalt transport system ATPase component; ABC transporter ATP-binding protein complement(93533..94882) Lactobacillus acidophilus NCFM 3252429 YP_193027.1 CDS LBA0095 NC_006814.3 95028 95969 D regulatory protein 95028..95969 Lactobacillus acidophilus NCFM 3252453 YP_193028.1 CDS htpX NC_006814.3 96007 96903 R metalloprotease; heat shock protein HtpX complement(96007..96903) Lactobacillus acidophilus NCFM 3252455 YP_193029.1 CDS lemA NC_006814.3 96920 97480 R LemA; COG1704 Uncharacterized conserved protein; hypothetical protein complement(96920..97480) Lactobacillus acidophilus NCFM 3252474 YP_193030.1 CDS LBA0098 NC_006814.3 97579 98685 R cation transporter complement(97579..98685) Lactobacillus acidophilus NCFM 3252488 YP_193031.1 CDS LBA0099 NC_006814.3 98749 98841 D hypothetical protein 98749..98841 Lactobacillus acidophilus NCFM 3252500 YP_193032.1 CDS LBA0100 NC_006814.3 98869 99276 D hypothetical protein 98869..99276 Lactobacillus acidophilus NCFM 3252505 YP_193033.1 CDS LBA0101 NC_006814.3 99286 101043 D glycerophosphodiester phosphodiesterase 99286..101043 Lactobacillus acidophilus NCFM 3252515 YP_193034.1 CDS LBA0102 NC_006814.3 101104 101244 D hypothetical protein 101104..101244 Lactobacillus acidophilus NCFM 3252533 YP_193035.1 CDS LBA0103 NC_006814.3 101346 102206 D hypothetical protein 101346..102206 Lactobacillus acidophilus NCFM 3252536 YP_193036.1 CDS LBA0104 NC_006814.3 102190 102348 D hypothetical protein 102190..102348 Lactobacillus acidophilus NCFM 3252539 YP_193039.1 CDS LBA0107 NC_006814.3 103668 104792 D COG3405 Endoglucanase Y; beta-glucanase 103668..104792 Lactobacillus acidophilus NCFM 3252548 YP_193040.1 CDS LBA0108 NC_006814.3 104860 105507 D hydrolase 104860..105507 Lactobacillus acidophilus NCFM 3252554 YP_193041.1 CDS LBA0109 NC_006814.3 105508 106425 D COG1403 Restriction endonuclease; hypothetical protein 105508..106425 Lactobacillus acidophilus NCFM 3252575 YP_193042.1 CDS LBA0110 NC_006814.3 106519 107448 R hypothetical protein complement(106519..107448) Lactobacillus acidophilus NCFM 3252578 YP_193043.1 CDS LBA0111 NC_006814.3 107525 108280 R glutamate ATP binding protein complement(107525..108280) Lactobacillus acidophilus NCFM 3252587 YP_193044.1 CDS LBA0112 NC_006814.3 108280 109893 R glutamine ABC transporter complement(108280..109893) Lactobacillus acidophilus NCFM 3252596 YP_193045.1 CDS LBA0113 NC_006814.3 110225 110857 R COG2094 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase complement(110225..110857) Lactobacillus acidophilus NCFM 3252623 YP_193046.1 CDS LBA0114 NC_006814.3 110925 111284 D COG3189 Uncharacterized conserved protein; hypothetical protein 110925..111284 Lactobacillus acidophilus NCFM 3252640 YP_193047.1 CDS terC NC_006814.3 111331 112119 R TerC; hypothetical protein complement(111331..112119) Lactobacillus acidophilus NCFM 3252641 YP_193048.1 CDS LBA0116 NC_006814.3 112312 112482 R methyltransferase complement(112312..112482) Lactobacillus acidophilus NCFM 3252645 YP_193049.1 CDS LBA0117 NC_006814.3 112683 113402 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(112683..113402) Lactobacillus acidophilus NCFM 3252648 YP_193050.1 CDS LBA0118 NC_006814.3 113477 113956 D hypothetical protein 113477..113956 Lactobacillus acidophilus NCFM 3252661 YP_193051.1 CDS LBA0119 NC_006814.3 113960 115417 R cardiolipin synthase complement(113960..115417) Lactobacillus acidophilus NCFM 3252665 YP_193052.1 CDS LBA0120 NC_006814.3 115439 116365 R hypothetical protein complement(115439..116365) Lactobacillus acidophilus NCFM 3252675 YP_193053.1 CDS LBA0121 NC_006814.3 116459 117205 D COG0328 Ribonuclease HI; ribonuclease H 116459..117205 Lactobacillus acidophilus NCFM 3252682 YP_193054.1 CDS LBA0122 NC_006814.3 117249 118190 R COG4086 Predicted secreted protein; hypothetical protein complement(117249..118190) Lactobacillus acidophilus NCFM 3252685 YP_193055.1 CDS epsV NC_006814.3 118380 119195 D EpsV; polysaccharide biosynthesis protein 118380..119195 Lactobacillus acidophilus NCFM 3252694 YP_193056.1 CDS LBA0124 NC_006814.3 119208 119864 D oxidoreductase 119208..119864 Lactobacillus acidophilus NCFM 3252715 YP_193057.1 CDS LBA0125 NC_006814.3 119982 120791 D COG1396 Predicted transcriptional regulators; hypothetical protein 119982..120791 Lactobacillus acidophilus NCFM 3252727 YP_193058.1 CDS LBA0126 NC_006814.3 120891 121307 D membrane protein; hypothetical protein 120891..121307 Lactobacillus acidophilus NCFM 3252732 YP_193059.1 CDS LBA0127 NC_006814.3 121538 122779 R transposase complement(121538..122779) Lactobacillus acidophilus NCFM 3252733 YP_193060.1 CDS LBA0128 NC_006814.3 122924 123202 D COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain; hypothetical protein 122924..123202 Lactobacillus acidophilus NCFM 3252742 YP_193063.1 CDS LBA0131 NC_006814.3 124218 125204 D COG0462 Phosphoribosylpyrophosphate synthetase; ribose-p pyrokinase 124218..125204 Lactobacillus acidophilus NCFM 3252778 YP_193064.1 CDS tetR NC_006814.3 125363 126046 D COG1309 transcriptional regulator, TetR family; transcriptional regulator 125363..126046 Lactobacillus acidophilus NCFM 3252788 YP_193065.1 CDS LBA0133 NC_006814.3 126059 126883 D hypothetical protein 126059..126883 Lactobacillus acidophilus NCFM 3252800 YP_193066.1 CDS glnP NC_006814.3 127010 128485 D GlnP; glutamine ABC transporter permease 127010..128485 Lactobacillus acidophilus NCFM 3252817 YP_193067.1 CDS glnQ NC_006814.3 128478 129215 D GlnQ; glutamine ABC transporter ATP-binding protein 128478..129215 Lactobacillus acidophilus NCFM 3252822 YP_193068.1 CDS LBA0136 NC_006814.3 129261 130499 R hypothetical protein complement(129261..130499) Lactobacillus acidophilus NCFM 3252827 YP_193069.1 CDS ddl NC_006814.3 130652 131734 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 130652..131734 Lactobacillus acidophilus NCFM 3252845 YP_193070.1 CDS LBA0138 NC_006814.3 131764 132504 D hypothetical protein 131764..132504 Lactobacillus acidophilus NCFM 3252629 YP_193071.1 CDS LBA0139 NC_006814.3 132595 133728 D COG5438 Predicted multitransmembrane protein; hypothetical protein 132595..133728 Lactobacillus acidophilus NCFM 3252959 YP_193072.1 CDS LBA0140 NC_006814.3 133725 134510 D COG5438 Predicted multitransmembrane protein; hypothetical protein 133725..134510 Lactobacillus acidophilus NCFM 3252960 YP_193073.1 CDS LBA0141 NC_006814.3 134482 135303 D COG0657 Esterase-lipase; acetyl esterase 134482..135303 Lactobacillus acidophilus NCFM 3252965 YP_193074.1 CDS LBA0142 NC_006814.3 135287 135460 D hypothetical protein 135287..135460 Lactobacillus acidophilus NCFM 3252975 YP_193075.1 CDS LBA0143 NC_006814.3 135728 138742 R alpha-glucosidase complement(135728..138742) Lactobacillus acidophilus NCFM 3252977 YP_193076.1 CDS LBA0144 NC_006814.3 138898 140052 D COG1820 N-acetylglucosamine-6-phosphate deacetylase; n-acetylglucosamine-6-P deacetylase 138898..140052 Lactobacillus acidophilus NCFM 3253011 YP_193077.1 CDS LBA0145 NC_006814.3 140422 140901 R 2-deoxyribosyltransferase complement(140422..140901) Lactobacillus acidophilus NCFM 3253012 YP_193078.1 CDS LBA0146 NC_006814.3 141014 141502 D PTS system transporter subunit IIA 141014..141502 Lactobacillus acidophilus NCFM 3253065 YP_193079.1 CDS LBA0147 NC_006814.3 141523 142326 R COG2365 protein tyrosine-serine phosphatase; protein tyrosine phosphatase complement(141523..142326) Lactobacillus acidophilus NCFM 3253081 YP_193080.1 CDS LBA0148 NC_006814.3 142307 142435 D hypothetical protein 142307..142435 Lactobacillus acidophilus NCFM 3253096 YP_193081.1 CDS uspA NC_006814.3 142476 142961 D nucleotide-binding protein 142476..142961 Lactobacillus acidophilus NCFM 3252039 YP_193082.1 CDS LBA0150 NC_006814.3 143090 143215 D hypothetical protein 143090..143215 Lactobacillus acidophilus NCFM 3253024 YP_193083.1 CDS LBA0151 NC_006814.3 143306 144235 D alkylphosphonate ABC transporter 143306..144235 Lactobacillus acidophilus NCFM 3252310 YP_193084.1 CDS LBA0152 NC_006814.3 144261 145034 D alkylphosphonate ABC transporter 144261..145034 Lactobacillus acidophilus NCFM 3252836 YP_193085.1 CDS LBA0153 NC_006814.3 145034 145831 D alkylphosphonate ABC transporter 145034..145831 Lactobacillus acidophilus NCFM 3252880 YP_193086.1 CDS LBA0154 NC_006814.3 145831 146643 D phosphonate ABC transporter 145831..146643 Lactobacillus acidophilus NCFM 3251493 YP_193087.1 CDS LBA0155 NC_006814.3 146691 147263 R DNA-3-methyladenine glycosidase complement(146691..147263) Lactobacillus acidophilus NCFM 3252833 YP_193088.1 CDS LBA0156 NC_006814.3 147414 147899 D hypothetical protein 147414..147899 Lactobacillus acidophilus NCFM 3252449 YP_193089.1 CDS LBA0157 NC_006814.3 147955 149352 D hypothetical protein 147955..149352 Lactobacillus acidophilus NCFM 3252586 YP_193090.1 CDS asnH NC_006814.3 149468 151417 D COG0367 Asparagine synthase (glutamine-hydrolyzing); asn synthetase 149468..151417 Lactobacillus acidophilus NCFM 3252935 YP_193091.1 CDS LBA0159 NC_006814.3 151439 152707 D COG3919 Predicted ATP-grasp enzyme; hypothetical protein 151439..152707 Lactobacillus acidophilus NCFM 3252813 YP_193092.1 CDS LBA0160 NC_006814.3 152886 155081 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 152886..155081 Lactobacillus acidophilus NCFM 3252314 YP_193093.1 CDS LBA0161 NC_006814.3 155065 155778 D anaerobic NTP reductase or activator protein 155065..155778 Lactobacillus acidophilus NCFM 3252123 YP_193094.1 CDS LBA0162 NC_006814.3 155835 156398 D hypothetical protein 155835..156398 Lactobacillus acidophilus NCFM 3252158 YP_193095.1 CDS LBA0163 NC_006814.3 156398 157609 D COG2461 Uncharacterized conserved protein; hypothetical protein 156398..157609 Lactobacillus acidophilus NCFM 3252832 YP_193096.1 CDS LBA0164 NC_006814.3 157716 158933 D efflux permease; multidrug resistance protein 157716..158933 Lactobacillus acidophilus NCFM 3253047 YP_193097.1 CDS pepO NC_006814.3 159007 160959 D PepO; COG3590 Predicted metalloendopeptidase; neutral endopeptidase 159007..160959 Lactobacillus acidophilus NCFM 3252650 YP_193098.1 CDS LBA0166 NC_006814.3 161203 163053 R COG3158 K+ transporter; K+ uptake protein complement(161203..163053) Lactobacillus acidophilus NCFM 3252439 YP_193099.1 CDS LBA0167 NC_006814.3 163671 164081 R hypothetical protein complement(163671..164081) Lactobacillus acidophilus NCFM 3252271 YP_193100.1 CDS LBA0168 NC_006814.3 164184 164633 R Spore germination protein GerIA; hypothetical protein complement(164184..164633) Lactobacillus acidophilus NCFM 3253050 YP_193101.1 CDS slpA NC_006814.3 165277 166611 D SlpA; S-layer protein precursor (surface layer protein) (SA-protein); S-layer protein 165277..166611 Lactobacillus acidophilus NCFM 3252774 YP_193102.1 CDS LBA0170 NC_006814.3 166686 167051 R 6-pyruvoyl tetrahydrobiopterin synthase complement(166686..167051) Lactobacillus acidophilus NCFM 3253019 YP_193103.1 CDS LBA0171 NC_006814.3 167017 168378 R glycosyltransferase complement(167017..168378) Lactobacillus acidophilus NCFM 3252862 YP_193104.1 CDS LBA0173 NC_006814.3 168378 169499 R Uncharacterized conserved membrane protein; hypothetical protein complement(168378..169499) Lactobacillus acidophilus NCFM 3252792 YP_193105.1 CDS slpB NC_006814.3 169584 170957 R SlpB; conserved protein; S-layer protein complement(169584..170957) Lactobacillus acidophilus NCFM 3252692 YP_193106.1 CDS LBA0176 NC_006814.3 171321 172550 D N-acetylmuramidase 171321..172550 Lactobacillus acidophilus NCFM 3252343 YP_193107.1 CDS LBA0177 NC_006814.3 172569 173663 D autolysin, amidase 172569..173663 Lactobacillus acidophilus NCFM 3252902 YP_193108.1 CDS LBA0181 NC_006814.3 173787 175622 D Na+-H+ antiporter 173787..175622 Lactobacillus acidophilus NCFM 3252600 YP_193109.1 CDS LBA0182 NC_006814.3 175712 176677 R oxidoreductase complement(175712..176677) Lactobacillus acidophilus NCFM 3252036 YP_193110.1 CDS LBA0183 NC_006814.3 176689 177483 R GMP synthetase; DNA polymerase complement(176689..177483) Lactobacillus acidophilus NCFM 3252984 YP_193111.1 CDS LBA0184 NC_006814.3 177558 178319 R hypothetical protein complement(177558..178319) Lactobacillus acidophilus NCFM 3252660 YP_193112.1 CDS gpmA NC_006814.3 178485 179177 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 178485..179177 Lactobacillus acidophilus NCFM 3252143 YP_193113.1 CDS LBA0186 NC_006814.3 179395 179997 D pyrrolidone carboxyl peptidase 179395..179997 Lactobacillus acidophilus NCFM 3253104 YP_193114.1 CDS LBA0187 NC_006814.3 180061 180621 D hypothetical protein 180061..180621 Lactobacillus acidophilus NCFM 3253071 YP_193115.1 CDS LBA0188 NC_006814.3 180723 181826 D COG1316 transcriptional regulator; transcriptional regulator 180723..181826 Lactobacillus acidophilus NCFM 3252099 YP_193116.1 CDS LBA0189 NC_006814.3 181826 182443 D COG0344 Predicted membrane protein; membrane protein 181826..182443 Lactobacillus acidophilus NCFM 3252085 YP_193117.1 CDS LBA0190 NC_006814.3 182486 185476 D glucan modification protein 182486..185476 Lactobacillus acidophilus NCFM 3252057 YP_193118.1 CDS LBA0191 NC_006814.3 185577 186968 D hypothetical protein CBG06205; fibronectin domain-containing protein 185577..186968 Lactobacillus acidophilus NCFM 3251183 YP_193119.1 CDS LBA0192 NC_006814.3 187222 188484 D COG0162 Tyrosyl-tRNA synthetase; Tyr-tRNA synthetase 187222..188484 Lactobacillus acidophilus NCFM 3252060 YP_193120.1 CDS LBA0193 NC_006814.3 188592 188948 D ENSANGP00000002842; hypothetical protein 188592..188948 Lactobacillus acidophilus NCFM 3252048 YP_193121.1 CDS pepG NC_006814.3 189152 190465 D endopeptidase E2; aminopeptidase 189152..190465 Lactobacillus acidophilus NCFM 3252046 YP_193122.1 CDS LBA0196 NC_006814.3 190465 191118 D hydrolase 190465..191118 Lactobacillus acidophilus NCFM 3252251 YP_193123.1 CDS oppA NC_006814.3 191288 192913 D ABC transporter; OppA; oligopeptide binding protein 191288..192913 Lactobacillus acidophilus NCFM 3252244 YP_193124.1 CDS oppA NC_006814.3 192993 194621 D ABC transporter; OppA; peptide binding protein 192993..194621 Lactobacillus acidophilus NCFM 3252239 YP_193125.1 CDS LBA0199 NC_006814.3 194769 195911 D inosine-5'-monophosphate dehydrogenase 194769..195911 Lactobacillus acidophilus NCFM 3252230 YP_193126.1 CDS oppB NC_006814.3 196073 197002 D oligopeptide ABC transporter; permease 196073..197002 Lactobacillus acidophilus NCFM 3252215 YP_193127.1 CDS oppC NC_006814.3 197010 198041 D OppC; permease ( oligopeptide ABC transporter) 197010..198041 Lactobacillus acidophilus NCFM 3252204 YP_193128.1 CDS oppD NC_006814.3 198057 199115 D oligopept. ABC transporter; ATP-binding protein 198057..199115 Lactobacillus acidophilus NCFM 3252202 YP_193129.1 CDS oppF NC_006814.3 199136 200080 D OppF; ATP binding protein ( oligopeptide ABC transporter ) 199136..200080 Lactobacillus acidophilus NCFM 3252178 YP_193130.1 CDS pepE NC_006814.3 200133 201449 R Aminopeptidase E; aminopeptidase complement(200133..201449) Lactobacillus acidophilus NCFM 3252177 YP_193131.1 CDS LBA0205 NC_006814.3 201593 202018 R heat shock low molecular weight complement(201593..202018) Lactobacillus acidophilus NCFM 3252171 YP_193132.1 CDS greA NC_006814.3 202233 202694 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 202233..202694 Lactobacillus acidophilus NCFM 3252160 YP_193133.1 CDS LBA0207 NC_006814.3 202772 203434 D hypothetical protein 202772..203434 Lactobacillus acidophilus NCFM 3252149 YP_193134.1 CDS LBA0208 NC_006814.3 203601 204200 R COG2135 Uncharacterized conserved protein; hypothetical protein complement(203601..204200) Lactobacillus acidophilus NCFM 3252146 YP_193135.1 CDS LBA0209 NC_006814.3 204306 205328 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 204306..205328 Lactobacillus acidophilus NCFM 3252122 YP_193136.1 CDS LBA0210 NC_006814.3 205352 205831 D COG2131 Deoxycytidylate deaminase; dCMP deaminase 205352..205831 Lactobacillus acidophilus NCFM 3252124 YP_193137.1 CDS LBA0211 NC_006814.3 205812 206429 D hypothetical protein 205812..206429 Lactobacillus acidophilus NCFM 3252125 YP_193138.1 CDS LBA0212 NC_006814.3 206719 209382 D COG0474 Cation transport ATPase; cation transporter P-ATPase 206719..209382 Lactobacillus acidophilus NCFM 3252116 YP_193139.1 CDS LBA0213 NC_006814.3 209479 211455 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 209479..211455 Lactobacillus acidophilus NCFM 3251475 YP_193140.1 CDS LBA0214 NC_006814.3 211455 212222 D COG0084 Mg-dependent DNAse; hypothetical protein 211455..212222 Lactobacillus acidophilus NCFM 3252102 YP_193141.1 CDS LBA0215 NC_006814.3 212209 212796 D primase like 212209..212796 Lactobacillus acidophilus NCFM 3252091 YP_193142.1 CDS ksgA NC_006814.3 212786 213670 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 212786..213670 Lactobacillus acidophilus NCFM 3252104 YP_193143.1 CDS LBA0217 NC_006814.3 213732 213989 D COG4466 Uncharacterized protein conserved in bacteria; hypothetical protein 213732..213989 Lactobacillus acidophilus NCFM 3252109 YP_193144.1 CDS purR NC_006814.3 214093 214923 D PurR; pur operon repressor 214093..214923 Lactobacillus acidophilus NCFM 3252059 YP_193145.1 CDS glmU NC_006814.3 214971 216350 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 214971..216350 Lactobacillus acidophilus NCFM 3252067 YP_193146.1 CDS LBA0220 NC_006814.3 216570 217088 D potential frameshift to 221; S-layer protein 216570..217088 Lactobacillus acidophilus NCFM 3252081 YP_193147.1 CDS LBA0221 NC_006814.3 217122 217655 D potential frameshift to 220; S-layer protein 217122..217655 Lactobacillus acidophilus NCFM 3251508 YP_193148.1 CDS LBA0222 NC_006814.3 217766 218614 D chloroquine resistance marker protein; hypothetical protein 217766..218614 Lactobacillus acidophilus NCFM 3252093 YP_193149.1 CDS cdpA NC_006814.3 218630 220429 D CdpA; surface layer protein; cell separation protein 218630..220429 Lactobacillus acidophilus NCFM 3252068 YP_193150.1 CDS prsA NC_006814.3 220709 221683 D COG0462 Phosphoribosylpyrophosphate synthetase; ribose-p-pyrophosphokinase 220709..221683 Lactobacillus acidophilus NCFM 3252108 YP_193151.1 CDS LBA0225 NC_006814.3 221735 223162 R 6-phospho-beta-glucosidase; 6-p-beta-glucosidase complement(221735..223162) Lactobacillus acidophilus NCFM 3252433 YP_193152.1 CDS LBA0226 NC_006814.3 223292 224008 R transcriptional regulator complement(223292..224008) Lactobacillus acidophilus NCFM 3252414 YP_193153.1 CDS LBA0227 NC_006814.3 224196 225521 D PTS system, IIC component; PTS system cellobiose-specific transporter subunit IIC 224196..225521 Lactobacillus acidophilus NCFM 3252384 YP_193154.1 CDS LBA0228 NC_006814.3 225591 226499 D transcriptional regulator 225591..226499 Lactobacillus acidophilus NCFM 3252366 YP_193155.1 CDS LBA0229 NC_006814.3 226549 226830 R hypothetical protein complement(226549..226830) Lactobacillus acidophilus NCFM 3252356 YP_193156.1 CDS LBA0230 NC_006814.3 226860 228224 R COG1078 HD family phosphohydrolases; hypothetical protein complement(226860..228224) Lactobacillus acidophilus NCFM 3252332 YP_193157.1 CDS LBA0231 NC_006814.3 228340 228744 D hypothetical protein 228340..228744 Lactobacillus acidophilus NCFM 3252328 YP_193158.1 CDS LBA0232 NC_006814.3 228791 229345 D participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 228791..229345 Lactobacillus acidophilus NCFM 3252312 YP_193159.1 CDS pyrG NC_006814.3 229463 231082 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 229463..231082 Lactobacillus acidophilus NCFM 3252279 YP_193160.1 CDS LBA0234 NC_006814.3 231212 232507 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 231212..232507 Lactobacillus acidophilus NCFM 3252287 YP_193163.1 CDS LBA0237 NC_006814.3 234089 234910 R raffinose operon transcriptional regulator protein RafR; transcriptional regulator raffinose operon complement(234089..234910) Lactobacillus acidophilus NCFM 3252274 YP_193164.1 CDS LBA0238 NC_006814.3 234961 235590 D hypothetical protein 234961..235590 Lactobacillus acidophilus NCFM 3252269 YP_193165.1 CDS LBA0239 NC_006814.3 235684 236964 R xanthine permease complement(235684..236964) Lactobacillus acidophilus NCFM 3252222 YP_193166.1 CDS LBA0240 NC_006814.3 236972 237550 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(236972..237550) Lactobacillus acidophilus NCFM 3252173 YP_193167.1 CDS LBA0242 NC_006814.3 237782 238552 R hypothetical protein complement(237782..238552) Lactobacillus acidophilus NCFM 3252159 YP_193168.1 CDS LBA0244 NC_006814.3 238636 239601 R COG1396 Predicted transcriptional regulators; transcriptional regulator complement(238636..239601) Lactobacillus acidophilus NCFM 3252161 YP_193169.1 CDS guaA NC_006814.3 239826 241376 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 239826..241376 Lactobacillus acidophilus NCFM 3252155 YP_193170.1 CDS LBA0246 NC_006814.3 241930 242784 D daunorubicin resistance protein 241930..242784 Lactobacillus acidophilus NCFM 3252213 YP_193171.1 CDS LBA0247 NC_006814.3 242784 243650 D ABC transporter 242784..243650 Lactobacillus acidophilus NCFM 3252223 YP_193172.1 CDS LBA0248 NC_006814.3 243640 244092 D hypothetical protein 243640..244092 Lactobacillus acidophilus NCFM 3252229 YP_193173.1 CDS LBA0249 NC_006814.3 244511 245014 D acetyltransferase 244511..245014 Lactobacillus acidophilus NCFM 3252235 YP_193174.1 CDS LBA0250 NC_006814.3 245348 246052 D hypothetical protein 245348..246052 Lactobacillus acidophilus NCFM 3252145 YP_193175.1 CDS LBA0251 NC_006814.3 246043 246603 D potential frameshift to 252; similar to multidrug resistance protein B; multidrug resistance protein 246043..246603 Lactobacillus acidophilus NCFM 3252259 YP_193176.1 CDS LBA0252 NC_006814.3 246763 247116 D potential frameshift to 251; multidrug resistance protein 246763..247116 Lactobacillus acidophilus NCFM 3252260 YP_193177.1 CDS LBA0253 NC_006814.3 247165 247425 D potential frameshift to 251; multidrug resistance protein 247165..247425 Lactobacillus acidophilus NCFM 3252257 YP_193178.1 CDS LBA0254 NC_006814.3 247510 247728 D similar to turkey astrovirus protein; hypothetical protein 247510..247728 Lactobacillus acidophilus NCFM 3252190 YP_193179.1 CDS LBA0255 NC_006814.3 247728 248189 D S-methyltransferase 247728..248189 Lactobacillus acidophilus NCFM 3252144 YP_193180.1 CDS LBA0256 NC_006814.3 248261 248467 D hypothetical protein 248261..248467 Lactobacillus acidophilus NCFM 3252214 YP_193181.1 CDS LBA0257 NC_006814.3 248537 248731 D hypothetical protein 248537..248731 Lactobacillus acidophilus NCFM 3252256 YP_193182.1 CDS LBA0258 NC_006814.3 248787 249374 R hypothetical protein complement(248787..249374) Lactobacillus acidophilus NCFM 3252101 YP_193183.1 CDS LBA0259 NC_006814.3 249429 249746 R TEP3 protein; hypothetical protein complement(249429..249746) Lactobacillus acidophilus NCFM 3252168 YP_193184.1 CDS LBA0260 NC_006814.3 250073 250354 D hypothetical protein 250073..250354 Lactobacillus acidophilus NCFM 3252527 YP_193185.1 CDS glyA NC_006814.3 250411 251646 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 250411..251646 Lactobacillus acidophilus NCFM 3252509 YP_193186.1 CDS LBA0262 NC_006814.3 251738 253330 D COG0531 Amino acid transporters; aa transporter 251738..253330 Lactobacillus acidophilus NCFM 3252487 YP_193187.1 CDS LBA0263 NC_006814.3 253371 254219 R hypothetical protein complement(253371..254219) Lactobacillus acidophilus NCFM 3252485 YP_193188.1 CDS LBA0264 NC_006814.3 254319 255938 D COG0366 Glycosidases; glucan 1,6-alpha-glucosidase 254319..255938 Lactobacillus acidophilus NCFM 3252454 YP_193189.1 CDS rpmE2 NC_006814.3 256048 256293 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 256048..256293 Lactobacillus acidophilus NCFM 3252324 YP_193190.1 CDS LBA0266 NC_006814.3 256420 257787 D COG0770 UDP-N-acetylmuramyl pentapeptide synthase; d-ala-d-ala adding enzyme 256420..257787 Lactobacillus acidophilus NCFM 3252331 YP_193191.1 CDS LBA0267 NC_006814.3 257801 259288 D YdbR; ATP-dependent RNA helicase-like protein 257801..259288 Lactobacillus acidophilus NCFM 3252339 YP_193192.1 CDS acpS NC_006814.3 259369 259725 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 259369..259725 Lactobacillus acidophilus NCFM 3252299 YP_193193.1 CDS LBA0269 NC_006814.3 259725 260855 D alanine racemase; ala racemase 259725..260855 Lactobacillus acidophilus NCFM 3252362 YP_193194.1 CDS LBA0270 NC_006814.3 260916 261623 R COG0517 FOG CBS domain; hypothetical protein complement(260916..261623) Lactobacillus acidophilus NCFM 3252364 YP_193195.1 CDS LBA0271 NC_006814.3 261799 262770 R L-LDH complement(261799..262770) Lactobacillus acidophilus NCFM 3252415 YP_193196.1 CDS LBA0272 NC_006814.3 262905 263462 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 262905..263462 Lactobacillus acidophilus NCFM 3252428 YP_193197.1 CDS trcF NC_006814.3 263464 266961 D TrcF; transcriptional repair coupling factor 263464..266961 Lactobacillus acidophilus NCFM 3252435 YP_193198.1 CDS LBA0274 NC_006814.3 266978 267220 D COG1188 Ribosome-associated heat shock protein; hypothetical protein 266978..267220 Lactobacillus acidophilus NCFM 3252350 YP_193199.1 CDS LBA0275 NC_006814.3 267305 267682 D COG2919 Septum formation initiator; hypothetical protein 267305..267682 Lactobacillus acidophilus NCFM 3252416 YP_193200.1 CDS LBA0276 NC_006814.3 267682 268044 D 30S ribosomal protein S1 267682..268044 Lactobacillus acidophilus NCFM 3252448 YP_193201.1 CDS LBA0277 NC_006814.3 268072 269343 D cell cycle 268072..269343 Lactobacillus acidophilus NCFM 3252318 YP_193202.1 CDS ftsH NC_006814.3 269439 271595 D FtsH; COG0465 ATP-dependent Zn proteases; cell division protein 269439..271595 Lactobacillus acidophilus NCFM 3252438 YP_193203.1 CDS hslO NC_006814.3 271652 272542 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 271652..272542 Lactobacillus acidophilus NCFM 3252368 YP_193204.1 CDS LBA0280 NC_006814.3 272619 273647 D COG0042 tRNA-dihydrouridine synthase; transcriptional regulator 272619..273647 Lactobacillus acidophilus NCFM 3252305 YP_193205.1 CDS lysS NC_006814.3 273663 275213 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 273663..275213 Lactobacillus acidophilus NCFM 3252252 YP_193206.1 CDS LBA0282 NC_006814.3 275807 276262 D COG1956 GAF domain-containing protein; hypothetical protein 275807..276262 Lactobacillus acidophilus NCFM 3252720 YP_193207.1 CDS clpC NC_006814.3 276367 278844 D ClpC; ATPase 276367..278844 Lactobacillus acidophilus NCFM 3252699 YP_193208.1 CDS rpoB NC_006814.3 279065 282706 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 279065..282706 Lactobacillus acidophilus NCFM 3252691 YP_193209.1 CDS LBA0285 NC_006814.3 282722 286375 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 282722..286375 Lactobacillus acidophilus NCFM 3252672 YP_193210.1 CDS LBA0286 NC_006814.3 286426 287115 R type 4 prepilin-like protein leader peptide processing enzyme; prepilin peptidase complement(286426..287115) Lactobacillus acidophilus NCFM 3252669 YP_193211.1 CDS rpsL NC_006814.3 287288 287695 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 287288..287695 Lactobacillus acidophilus NCFM 3252631 YP_193212.1 CDS LBA0288 NC_006814.3 287711 288181 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 287711..288181 Lactobacillus acidophilus NCFM 3252622 YP_193213.1 CDS fusA NC_006814.3 288215 290308 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 288215..290308 Lactobacillus acidophilus NCFM 3252621 YP_193214.1 CDS rpsJ NC_006814.3 290628 290936 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 290628..290936 Lactobacillus acidophilus NCFM 3252597 YP_193215.1 CDS rplC NC_006814.3 290960 291598 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 290960..291598 Lactobacillus acidophilus NCFM 3252588 YP_193216.1 CDS rplD NC_006814.3 291613 292230 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 291613..292230 Lactobacillus acidophilus NCFM 3252553 YP_193217.1 CDS rplW NC_006814.3 292230 292532 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 292230..292532 Lactobacillus acidophilus NCFM 3252549 YP_193218.1 CDS rplB NC_006814.3 292548 293384 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 292548..293384 Lactobacillus acidophilus NCFM 3252537 YP_193220.1 CDS rplV NC_006814.3 293707 294060 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 293707..294060 Lactobacillus acidophilus NCFM 3252516 YP_193221.1 CDS rpsC NC_006814.3 294074 294748 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 294074..294748 Lactobacillus acidophilus NCFM 3252523 YP_193222.1 CDS rplP NC_006814.3 294748 295188 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 294748..295188 Lactobacillus acidophilus NCFM 3252473 YP_193223.1 CDS rpmC NC_006814.3 295178 295375 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 295178..295375 Lactobacillus acidophilus NCFM 3252463 YP_193224.1 CDS rpsQ NC_006814.3 295394 295660 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 295394..295660 Lactobacillus acidophilus NCFM 3252482 YP_193225.1 CDS rplN NC_006814.3 295692 296060 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 295692..296060 Lactobacillus acidophilus NCFM 3252542 YP_193226.1 CDS rplX NC_006814.3 296080 296313 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 296080..296313 Lactobacillus acidophilus NCFM 3252543 YP_193227.1 CDS rplE NC_006814.3 296328 296870 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 296328..296870 Lactobacillus acidophilus NCFM 3252447 YP_003864081.1 CDS LBA0303a NC_006814.3 296883 297068 D 30S ribosomal protein S14 296883..297068 Lactobacillus acidophilus NCFM 9714949 YP_193228.1 CDS rpsH NC_006814.3 297094 297492 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 297094..297492 Lactobacillus acidophilus NCFM 3252610 YP_193229.1 CDS rplF NC_006814.3 297517 298047 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 297517..298047 Lactobacillus acidophilus NCFM 3252637 YP_193230.1 CDS rplR NC_006814.3 298074 298430 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 298074..298430 Lactobacillus acidophilus NCFM 3252570 YP_193231.1 CDS rpsE NC_006814.3 298448 298954 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 298448..298954 Lactobacillus acidophilus NCFM 3252499 YP_193232.1 CDS rpmD NC_006814.3 298972 299157 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 298972..299157 Lactobacillus acidophilus NCFM 3252706 YP_193233.1 CDS rplO NC_006814.3 299181 299621 D late assembly protein; 50S ribosomal protein L15 299181..299621 Lactobacillus acidophilus NCFM 3252678 YP_193234.1 CDS secY NC_006814.3 299621 300916 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 299621..300916 Lactobacillus acidophilus NCFM 3252721 YP_193235.1 CDS adk NC_006814.3 300928 301584 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 300928..301584 Lactobacillus acidophilus NCFM 3252668 YP_193236.1 CDS infA NC_006814.3 301656 301877 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 301656..301877 Lactobacillus acidophilus NCFM 3252636 YP_193237.1 CDS rpmJ NC_006814.3 301894 302010 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 301894..302010 Lactobacillus acidophilus NCFM 3252701 YP_193238.1 CDS rpsM NC_006814.3 302035 302385 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 302035..302385 Lactobacillus acidophilus NCFM 3252526 YP_193239.1 CDS LBA0316 NC_006814.3 302407 302799 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 302407..302799 Lactobacillus acidophilus NCFM 3252501 YP_193240.1 CDS LBA0317 NC_006814.3 302848 303786 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 302848..303786 Lactobacillus acidophilus NCFM 3252683 YP_193241.1 CDS rplQ NC_006814.3 303811 304194 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 303811..304194 Lactobacillus acidophilus NCFM 3252653 YP_193242.1 CDS cbiO NC_006814.3 304386 305237 D with CbiNQ forms the ABC transporter for cobalt import; Lactobacillus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 304386..305237 Lactobacillus acidophilus NCFM 3252591 YP_193243.1 CDS cbiO NC_006814.3 305213 306070 D with CbiNQ forms the ABC transporter for cobalt import; Lactobacillus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 305213..306070 Lactobacillus acidophilus NCFM 3252585 YP_193244.1 CDS LBA0321 NC_006814.3 306063 306860 D ABC transporter permease 306063..306860 Lactobacillus acidophilus NCFM 3252710 YP_193245.1 CDS truA NC_006814.3 306863 307651 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 306863..307651 Lactobacillus acidophilus NCFM 3252671 YP_193246.1 CDS rplM NC_006814.3 307756 308199 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 307756..308199 Lactobacillus acidophilus NCFM 3252726 YP_193247.1 CDS rpsI NC_006814.3 308211 308606 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 308211..308606 Lactobacillus acidophilus NCFM 3252743 YP_193248.1 CDS LBA0325 NC_006814.3 308676 309728 R integrase complement(308676..309728) Lactobacillus acidophilus NCFM 3252744 YP_193249.1 CDS LBA0326 NC_006814.3 309805 309993 R hypothetical protein complement(309805..309993) Lactobacillus acidophilus NCFM 3252748 YP_193250.1 CDS LBA0327 NC_006814.3 310053 311153 R RepA; replication initiator protein; replication protein complement(310053..311153) Lactobacillus acidophilus NCFM 3252752 YP_193251.1 CDS LBA0328 NC_006814.3 311338 311868 R hypothetical protein complement(311338..311868) Lactobacillus acidophilus NCFM 3252011 YP_193252.1 CDS ftsK NC_006814.3 311865 312941 R FtsK; hypothetical protein; cell division protein complement(311865..312941) Lactobacillus acidophilus NCFM 3252760 YP_193253.1 CDS LBA0330 NC_006814.3 312941 313252 R hypothetical protein complement(312941..313252) Lactobacillus acidophilus NCFM 3252012 YP_193254.1 CDS LBA0331 NC_006814.3 313425 314309 D hypothetical protein 313425..314309 Lactobacillus acidophilus NCFM 3252013 YP_193255.1 CDS LBA0332 NC_006814.3 314359 317178 D YeeA protein; methylase 314359..317178 Lactobacillus acidophilus NCFM 3252014 YP_193256.1 CDS LBA0333 NC_006814.3 317178 317549 D major head protein; hypothetical protein 317178..317549 Lactobacillus acidophilus NCFM 3252775 YP_193257.1 CDS LBA0334 NC_006814.3 318099 318239 D hypothetical protein 318099..318239 Lactobacillus acidophilus NCFM 3252783 YP_193258.1 CDS LBA0335 NC_006814.3 318208 318369 D hypothetical protein 318208..318369 Lactobacillus acidophilus NCFM 3252780 YP_193259.1 CDS LBA0336 NC_006814.3 318450 319034 R COG0693 intracellular protease-amidase; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein complement(318450..319034) Lactobacillus acidophilus NCFM 3252015 YP_193260.1 CDS LBA0337 NC_006814.3 319080 319739 R 2-haloalkanoic acid dehalogenase; hypothetical protein complement(319080..319739) Lactobacillus acidophilus NCFM 3252796 YP_193261.1 CDS LBA0338 NC_006814.3 319813 320571 D transport protein; hypothetical protein 319813..320571 Lactobacillus acidophilus NCFM 3252797 YP_193262.1 CDS LBA0339 NC_006814.3 320611 321291 D COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 320611..321291 Lactobacillus acidophilus NCFM 3252802 YP_193263.1 CDS LBA0340 NC_006814.3 321353 322252 D cation efflux protein 321353..322252 Lactobacillus acidophilus NCFM 3252807 YP_193264.1 CDS LBA0341 NC_006814.3 322682 323122 D COG0588 Phosphoglycerate mutase 1; pga mutase 322682..323122 Lactobacillus acidophilus NCFM 3252808 YP_193265.1 CDS LBA0342 NC_006814.3 323227 324162 D 2',3'-cyclic-nucleotide 2'-phosphodiesterase 323227..324162 Lactobacillus acidophilus NCFM 3252811 YP_193266.1 CDS LBA0343 NC_006814.3 324213 325562 R Aminopeptidase C (Bleomycin hydrolase); aminopeptidase complement(324213..325562) Lactobacillus acidophilus NCFM 3252016 YP_193267.1 CDS LBA0344 NC_006814.3 325633 325959 R CG9391-PA; hypothetical protein complement(325633..325959) Lactobacillus acidophilus NCFM 3252828 YP_193268.1 CDS LBA0345 NC_006814.3 326061 326612 D phage related protein; dUTPase 326061..326612 Lactobacillus acidophilus NCFM 3252839 YP_193269.1 CDS radA NC_006814.3 326612 327988 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 326612..327988 Lactobacillus acidophilus NCFM 3252017 YP_193270.1 CDS gltX NC_006814.3 328066 329565 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 328066..329565 Lactobacillus acidophilus NCFM 3252843 YP_193271.1 CDS cysS NC_006814.3 329663 331096 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 329663..331096 Lactobacillus acidophilus NCFM 3252846 YP_193272.1 CDS LBA0349 NC_006814.3 331089 331532 D hypothetical protein 331089..331532 Lactobacillus acidophilus NCFM 3252020 YP_193273.1 CDS LBA0350 NC_006814.3 331519 332271 D COG0566 rRNA methylases; tRNA-rRNA methyltransferase 331519..332271 Lactobacillus acidophilus NCFM 3252021 YP_193274.1 CDS LBA0351 NC_006814.3 332411 332947 D sigma factor 30 RNA polymerase 332411..332947 Lactobacillus acidophilus NCFM 3252022 YP_193275.1 CDS LBA0352 NC_006814.3 333046 333264 D hypothetical protein 333046..333264 Lactobacillus acidophilus NCFM 3252856 YP_193276.1 CDS LBA0353 NC_006814.3 333403 334011 D CG1644-PA; hypothetical protein 333403..334011 Lactobacillus acidophilus NCFM 3252996 YP_193277.1 CDS LBA0354 NC_006814.3 334013 335497 D gluconate kinase 334013..335497 Lactobacillus acidophilus NCFM 3252034 YP_193278.1 CDS LBA0355 NC_006814.3 335494 336375 R predicted protein; transcriptional regulator complement(335494..336375) Lactobacillus acidophilus NCFM 3252033 YP_193279.1 CDS LBA0356 NC_006814.3 336498 338240 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(336498..338240) Lactobacillus acidophilus NCFM 3252032 YP_008992037.1 CDS LBA0357b NC_006814.3 338428 338577 D 50S ribosomal protein L33 338428..338577 Lactobacillus acidophilus NCFM 18111633 YP_193280.1 CDS secE NC_006814.3 338586 338753 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 338586..338753 Lactobacillus acidophilus NCFM 3252983 YP_193281.1 CDS nusG NC_006814.3 338867 339424 D NusG; COG0250 transcriptional antiterminator; transcriptional antiterminator 338867..339424 Lactobacillus acidophilus NCFM 3252979 YP_193282.1 CDS rplK NC_006814.3 339551 339976 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 339551..339976 Lactobacillus acidophilus NCFM 3252978 YP_193283.1 CDS rplA NC_006814.3 340056 340748 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 340056..340748 Lactobacillus acidophilus NCFM 3252031 YP_193284.1 CDS LBA0361 NC_006814.3 340852 341718 D substrate binding protein; phosphate-binding protein; ABC transporter 340852..341718 Lactobacillus acidophilus NCFM 3252973 YP_193285.1 CDS LBA0362 NC_006814.3 341722 342717 D ABC transporter permease 341722..342717 Lactobacillus acidophilus NCFM 3252030 YP_193286.1 CDS LBA0363 NC_006814.3 342720 343607 D ABC transporter permease 342720..343607 Lactobacillus acidophilus NCFM 3252029 YP_193287.1 CDS LBA0364 NC_006814.3 343613 344410 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 343613..344410 Lactobacillus acidophilus NCFM 3252968 YP_193288.1 CDS LBA0365 NC_006814.3 344412 345167 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 344412..345167 Lactobacillus acidophilus NCFM 3252028 YP_193289.1 CDS phoU NC_006814.3 345184 345861 D PhoU; phosphate uptake regulator 345184..345861 Lactobacillus acidophilus NCFM 3252027 YP_193290.1 CDS LBA0367 NC_006814.3 346044 347225 D COG0679 Predicted permeases; receptor 346044..347225 Lactobacillus acidophilus NCFM 3252962 YP_193292.1 CDS rplJ NC_006814.3 347907 348419 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 347907..348419 Lactobacillus acidophilus NCFM 3253107 YP_193293.1 CDS rplL NC_006814.3 348469 348831 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 348469..348831 Lactobacillus acidophilus NCFM 3252045 YP_193294.1 CDS LBA0371 NC_006814.3 348905 349720 D K+ channel 348905..349720 Lactobacillus acidophilus NCFM 3253044 YP_193295.1 CDS LBA0373 NC_006814.3 349754 350374 D hypothetical protein 349754..350374 Lactobacillus acidophilus NCFM 3252044 YP_193296.1 CDS LBA0374 NC_006814.3 350491 350745 D protein Hepatitis C virus; hypothetical protein 350491..350745 Lactobacillus acidophilus NCFM 3253036 YP_193297.1 CDS LBA0375 NC_006814.3 350778 351284 D COG0590 Cytosine-adenosine deaminases; cytidine-deoxycytidylate deaminase 350778..351284 Lactobacillus acidophilus NCFM 3253031 YP_193298.1 CDS LBA0376 NC_006814.3 351479 353269 D DNA polymerase III (DNA directed ) gamma-tau 351479..353269 Lactobacillus acidophilus NCFM 3253026 YP_193299.1 CDS tnpB NC_006814.3 353447 354604 D is605tnpB family; transposase 353447..354604 Lactobacillus acidophilus NCFM 3252043 YP_193300.1 CDS LBA0378 NC_006814.3 354802 355137 D hypothetical protein 354802..355137 Lactobacillus acidophilus NCFM 3252042 YP_193301.1 CDS recR NC_006814.3 355138 355737 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 355138..355737 Lactobacillus acidophilus NCFM 3253016 YP_193302.1 CDS LBA0380 NC_006814.3 355737 355976 D hypothetical protein 355737..355976 Lactobacillus acidophilus NCFM 3252041 YP_193303.1 CDS tmk NC_006814.3 356078 356728 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 356078..356728 Lactobacillus acidophilus NCFM 3252040 YP_193304.1 CDS LBA0382 NC_006814.3 356729 357049 D conserved protein lin2840; hypothetical protein 356729..357049 Lactobacillus acidophilus NCFM 3253007 YP_193305.1 CDS LBA0383 NC_006814.3 357050 357907 D DNA polymerase III subunit delta 357050..357907 Lactobacillus acidophilus NCFM 3253005 YP_193306.1 CDS LBA0384 NC_006814.3 357919 358269 D in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 357919..358269 Lactobacillus acidophilus NCFM 3253003 YP_193307.1 CDS LBA0385 NC_006814.3 358269 359123 D COG0313 Predicted methyltransferases; tetrapyrrole methylase 358269..359123 Lactobacillus acidophilus NCFM 3252038 YP_193308.1 CDS LBA0386 NC_006814.3 359126 359863 D COG3884 Acyl-ACP thioesterase; acyl-ACP thioesterase 359126..359863 Lactobacillus acidophilus NCFM 3252037 YP_193309.1 CDS LBA0387 NC_006814.3 359893 360429 D hypothetical protein 359893..360429 Lactobacillus acidophilus NCFM 3252035 YP_193310.1 CDS LBA0388 NC_006814.3 360457 361191 D glycoprotein endopeptidase 360457..361191 Lactobacillus acidophilus NCFM 3252264 YP_193311.1 CDS LBA0389 NC_006814.3 361175 361747 D COG0456 Acetyltransferases; ribosomal protein ala-acetyltransferase 361175..361747 Lactobacillus acidophilus NCFM 3252127 YP_193312.1 CDS LBA0390 NC_006814.3 361744 362793 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 361744..362793 Lactobacillus acidophilus NCFM 3252119 YP_193313.1 CDS LBA0391 NC_006814.3 362931 363644 D deoxyribose-phosphate aldolase; deoxyribose-p aldolase 362931..363644 Lactobacillus acidophilus NCFM 3252207 YP_193314.1 CDS LBA0392 NC_006814.3 363654 364625 D dehydrogenase 363654..364625 Lactobacillus acidophilus NCFM 3252399 YP_193315.1 CDS gntR NC_006814.3 364618 365328 D transcriptional regulator 364618..365328 Lactobacillus acidophilus NCFM 3252388 YP_193316.1 CDS LBA0394 NC_006814.3 365377 366564 R bile acid-inducible operon protein complement(365377..366564) Lactobacillus acidophilus NCFM 3252390 YP_193317.1 CDS LBA0395 NC_006814.3 366636 367973 R catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase complement(366636..367973) Lactobacillus acidophilus NCFM 3252347 YP_193318.1 CDS LBA0396 NC_006814.3 367973 369682 R catalyzes the formation of formyl-CoA from oxalyl-CoA; oxalyl-CoA decarboxylase complement(367973..369682) Lactobacillus acidophilus NCFM 3252330 YP_193319.1 CDS LBA0397 NC_006814.3 369862 371781 R ATP binding protein; ABC transporter complement(369862..371781) Lactobacillus acidophilus NCFM 3252313 YP_193320.1 CDS LBA0398 NC_006814.3 371965 372600 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 371965..372600 Lactobacillus acidophilus NCFM 3252544 YP_193321.1 CDS scrR NC_006814.3 372648 373634 R sucrose operon transcriptional repressor; sucrose operon repressor complement(372648..373634) Lactobacillus acidophilus NCFM 3252547 YP_193322.1 CDS scrB NC_006814.3 373651 375108 R ScrB; sucrose hydrolase; sucrose-6-p hydrolase complement(373651..375108) Lactobacillus acidophilus NCFM 3252514 YP_193323.1 CDS scrA NC_006814.3 375343 377292 D sucrose PTS transporter; PTS system sucrose transporter subunit IIBCA 375343..377292 Lactobacillus acidophilus NCFM 3252638 YP_193324.1 CDS LBA0402 NC_006814.3 377384 377911 D Penicillin-binding protein; hypothetical protein 377384..377911 Lactobacillus acidophilus NCFM 3252654 YP_193325.1 CDS LBA0403 NC_006814.3 378008 378472 D hypothetical protein 378008..378472 Lactobacillus acidophilus NCFM 3252704 YP_193326.1 CDS LBA0404 NC_006814.3 378472 379230 D hypothetical protein 378472..379230 Lactobacillus acidophilus NCFM 3253095 YP_193327.1 CDS groES NC_006814.3 379398 379682 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 379398..379682 Lactobacillus acidophilus NCFM 3252023 YP_193328.1 CDS groEL NC_006814.3 379705 381333 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 379705..381333 Lactobacillus acidophilus NCFM 3252952 YP_193329.1 CDS LBA0407 NC_006814.3 381372 381503 D hypothetical protein 381372..381503 Lactobacillus acidophilus NCFM 3252208 YP_193330.1 CDS hexA NC_006814.3 381484 384054 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 381484..384054 Lactobacillus acidophilus NCFM 3252166 YP_193331.1 CDS mutL NC_006814.3 384057 385952 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 384057..385952 Lactobacillus acidophilus NCFM 3252169 YP_193332.1 CDS ruvA NC_006814.3 385952 386539 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 385952..386539 Lactobacillus acidophilus NCFM 3252276 YP_193333.1 CDS ruvB NC_006814.3 386551 387600 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 386551..387600 Lactobacillus acidophilus NCFM 3252834 YP_193334.1 CDS LBA0412 NC_006814.3 387650 388060 D protein translocase 387650..388060 Lactobacillus acidophilus NCFM 3252572 YP_193335.1 CDS LBA0413 NC_006814.3 388167 389618 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 388167..389618 Lactobacillus acidophilus NCFM 3252289 YP_193336.1 CDS LBA0414 NC_006814.3 389494 390732 D DNA-damage-inducible protein 389494..390732 Lactobacillus acidophilus NCFM 3252943 YP_193337.1 CDS LBA0415 NC_006814.3 390795 391751 D COG0618 Exopolyphosphatase-related protein; hypothetical protein 390795..391751 Lactobacillus acidophilus NCFM 3252098 YP_193338.1 CDS LBA0416 NC_006814.3 391744 393105 D RNA helicase 391744..393105 Lactobacillus acidophilus NCFM 3252462 YP_193339.1 CDS alaS NC_006814.3 393347 395986 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 393347..395986 Lactobacillus acidophilus NCFM 3252894 YP_193340.1 CDS LBA0418 NC_006814.3 396047 396304 D COG4472 Uncharacterized protein conserved in bacteria; hypothetical protein 396047..396304 Lactobacillus acidophilus NCFM 3252840 YP_193341.1 CDS LBA0419 NC_006814.3 396304 396732 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 396304..396732 Lactobacillus acidophilus NCFM 3252950 YP_193342.1 CDS LBA0420 NC_006814.3 396734 397045 D hypothetical protein 396734..397045 Lactobacillus acidophilus NCFM 3252741 YP_193343.1 CDS mutS NC_006814.3 397104 399461 D MutS; mismatch repair protein 397104..399461 Lactobacillus acidophilus NCFM 3252461 YP_193344.1 CDS LBA0422 NC_006814.3 399539 399850 D thioredoxin reductase 399539..399850 Lactobacillus acidophilus NCFM 3252140 YP_193345.1 CDS mscL NC_006814.3 399894 400268 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(399894..400268) Lactobacillus acidophilus NCFM 3252980 YP_193346.1 CDS LBA0424 NC_006814.3 400374 400796 R hypothetical protein complement(400374..400796) Lactobacillus acidophilus NCFM 3252573 YP_193347.1 CDS murI NC_006814.3 400874 401677 D COG0796 Glutamate racemase; gluracemase 400874..401677 Lactobacillus acidophilus NCFM 3252051 YP_193348.1 CDS LBA0426 NC_006814.3 401677 402285 D hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 401677..402285 Lactobacillus acidophilus NCFM 3252582 YP_193350.1 CDS LBA0428 NC_006814.3 403294 403719 D COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain; tropomyosin-related protein 403294..403719 Lactobacillus acidophilus NCFM 3252025 YP_193351.1 CDS LBA0429 NC_006814.3 403737 404105 D hypothetical protein 403737..404105 Lactobacillus acidophilus NCFM 3252747 YP_193352.1 CDS LBA0430 NC_006814.3 404158 405264 R Xaa-Pro dipeptidase (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipeptidase); Xaa-Pro dipeptidase complement(404158..405264) Lactobacillus acidophilus NCFM 3252976 YP_193353.1 CDS ccpA NC_006814.3 405409 406410 D pepR1; catabolite control protein A 405409..406410 Lactobacillus acidophilus NCFM 3252456 YP_193354.1 CDS LBA0432 NC_006814.3 406445 407812 R COG0584 Glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(406445..407812) Lactobacillus acidophilus NCFM 3252886 YP_193355.1 CDS LBA0433 NC_006814.3 407908 408231 D hypothetical protein 407908..408231 Lactobacillus acidophilus NCFM 3252793 YP_193356.1 CDS LBA0434 NC_006814.3 408247 409629 D UDP-sugar hydrolase 408247..409629 Lactobacillus acidophilus NCFM 3252265 YP_193357.1 CDS LBA0435 NC_006814.3 409562 410230 D hypothetical protein 409562..410230 Lactobacillus acidophilus NCFM 3252457 YP_193358.1 CDS LBA0436 NC_006814.3 410230 411006 D n-acetylglucosamine catabolic protein 410230..411006 Lactobacillus acidophilus NCFM 3252283 YP_193359.1 CDS LBA0437 NC_006814.3 411003 411611 D COG4478 Predicted membrane protein; hypothetical protein 411003..411611 Lactobacillus acidophilus NCFM 3252452 YP_193360.1 CDS dedA NC_006814.3 411621 412271 R DedA; COG0586 Uncharacterized membrane-associated protein; hypothetical protein complement(411621..412271) Lactobacillus acidophilus NCFM 3252294 YP_193361.1 CDS LBA0439 NC_006814.3 412281 413165 R COG0492 Thioredoxin reductase; thioredoxin reductase complement(412281..413165) Lactobacillus acidophilus NCFM 3252969 YP_193362.1 CDS mutT NC_006814.3 420438 420860 D MutT; mutator protein 420438..420860 Lactobacillus acidophilus NCFM 3252304 YP_193363.1 CDS LBA0442 NC_006814.3 420860 423454 D phage related helicase 420860..423454 Lactobacillus acidophilus NCFM 3252293 YP_193364.1 CDS LBA0443 NC_006814.3 423467 423751 D helicase; hypothetical protein 423467..423751 Lactobacillus acidophilus NCFM 3252855 YP_193365.1 CDS LBA0444 NC_006814.3 425058 426221 D COG0438 Glycosyltransferase; glycosyltransferase 425058..426221 Lactobacillus acidophilus NCFM 3253035 YP_193366.1 CDS LBA0445 NC_006814.3 426236 427279 D COG0438 Glycosyltransferase; glycosyltransferase 426236..427279 Lactobacillus acidophilus NCFM 3252306 YP_193367.1 CDS LBA0446 NC_006814.3 427279 428304 D hypothetical protein 427279..428304 Lactobacillus acidophilus NCFM 3252933 YP_193368.1 CDS LBA0447 NC_006814.3 428376 430436 D phosphoglycerol transferase 428376..430436 Lactobacillus acidophilus NCFM 3252893 YP_193369.1 CDS secG NC_006814.3 430504 430737 D protein translocase, SecG subunit; preprotein translocase subunit SecG 430504..430737 Lactobacillus acidophilus NCFM 3252890 YP_193370.1 CDS LBA0449 NC_006814.3 430808 433156 D COG0557 Exoribonuclease R; ribonuclease R 430808..433156 Lactobacillus acidophilus NCFM 3252853 YP_193371.1 CDS smpB NC_006814.3 433168 433623 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 433168..433623 Lactobacillus acidophilus NCFM 3252940 YP_193372.1 CDS manL NC_006814.3 439492 440502 D PTS system mannose-specific transporter subunit IIAB 439492..440502 Lactobacillus acidophilus NCFM 3252133 YP_193373.1 CDS manM NC_006814.3 440521 441330 D COG3715 Phosphotransferase system, mannose-fructose -N-acetylgalactosamine-specific; PTS system mannose-specific transporter subunit IIC 440521..441330 Lactobacillus acidophilus NCFM 3252117 YP_193374.1 CDS manN NC_006814.3 441359 442282 D COG3716 Phosphotransferase system, mannose-fructose -N-acetylgalactosamine-specific; PTS system mannose-specific transporter subunit IID 441359..442282 Lactobacillus acidophilus NCFM 3252804 YP_193375.1 CDS LBA0457 NC_006814.3 442289 442657 D hypothetical protein 442289..442657 Lactobacillus acidophilus NCFM 3252879 YP_193376.1 CDS lysR NC_006814.3 442703 443584 R transcriptional regulator complement(442703..443584) Lactobacillus acidophilus NCFM 3252814 YP_193377.1 CDS LBA0459 NC_006814.3 443767 444219 D similar to acetyltransferase; maltose O-acetyltransferase 443767..444219 Lactobacillus acidophilus NCFM 3252881 YP_193378.1 CDS LBA0460 NC_006814.3 444247 445620 R amino acid permease complement(444247..445620) Lactobacillus acidophilus NCFM 3252842 YP_193379.1 CDS adhE NC_006814.3 445913 448543 D COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 445913..448543 Lactobacillus acidophilus NCFM 3252921 YP_193380.1 CDS glmS NC_006814.3 448725 450536 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 448725..450536 Lactobacillus acidophilus NCFM 3252858 YP_193381.1 CDS ackA NC_006814.3 450871 452064 D COG0282 Acetate kinase; acetate kinase 450871..452064 Lactobacillus acidophilus NCFM 3252580 YP_193382.1 CDS LBA0464 NC_006814.3 452165 452896 D carboxymuconolactone decarboxylase 452165..452896 Lactobacillus acidophilus NCFM 3252803 YP_193383.1 CDS mutT NC_006814.3 453002 453412 D MutT; nudix family protein 453002..453412 Lactobacillus acidophilus NCFM 3252751 YP_193384.1 CDS LBA0466 NC_006814.3 453492 455150 R hypothetical protein complement(453492..455150) Lactobacillus acidophilus NCFM 3252961 YP_193385.1 CDS LBA0468 NC_006814.3 455358 457178 D hypothetical protein 455358..457178 Lactobacillus acidophilus NCFM 3252551 YP_193386.1 CDS LBA0469 NC_006814.3 457183 458511 D hypothetical protein 457183..458511 Lactobacillus acidophilus NCFM 3252713 YP_193387.1 CDS LBA0470 NC_006814.3 458523 460754 D COG1201 Lhr-like helicases; ATP-dependent helicase 458523..460754 Lactobacillus acidophilus NCFM 3253046 YP_193388.1 CDS LBA0471 NC_006814.3 460761 461165 D Cytochrome P450 71C1; hypothetical protein 460761..461165 Lactobacillus acidophilus NCFM 3252722 YP_193389.1 CDS amtB NC_006814.3 461384 462634 D ammonium transport protein; ammonium transporter 461384..462634 Lactobacillus acidophilus NCFM 3252557 YP_193390.1 CDS LBA0474 NC_006814.3 462687 463445 D nitroreductase; NADPH-flavin oxidoreductase 462687..463445 Lactobacillus acidophilus NCFM 3252054 YP_193391.1 CDS LBA0475 NC_006814.3 463844 468349 D restriction endonuclease 463844..468349 Lactobacillus acidophilus NCFM 3252142 YP_193392.1 CDS LBA0476 NC_006814.3 468352 470100 D prophage Lp2 protein 4; hypothetical protein 468352..470100 Lactobacillus acidophilus NCFM 3252096 YP_193393.1 CDS LBA0477 NC_006814.3 470105 470974 D prophage Lp2 protein 3; DNA methyltransferase 470105..470974 Lactobacillus acidophilus NCFM 3252301 YP_193394.1 CDS LBA0478 NC_006814.3 471076 471759 D methylase 471076..471759 Lactobacillus acidophilus NCFM 3252272 YP_193395.1 CDS LBA0479 NC_006814.3 471808 472509 R hypothetical protein complement(471808..472509) Lactobacillus acidophilus NCFM 3252992 YP_193396.1 CDS LBA0480 NC_006814.3 472744 473094 D hypothetical protein 472744..473094 Lactobacillus acidophilus NCFM 3252255 YP_193397.1 CDS ftsK NC_006814.3 473261 474388 D FtsK; hypothetical protein; DNA segregation ATPase 473261..474388 Lactobacillus acidophilus NCFM 3252971 YP_193398.1 CDS LBA0482 NC_006814.3 474519 474932 D hypothetical protein 474519..474932 Lactobacillus acidophilus NCFM 3252467 YP_193399.1 CDS repB NC_006814.3 475046 476128 D replication initiator protein 475046..476128 Lactobacillus acidophilus NCFM 3252878 YP_193400.1 CDS LBA0484 NC_006814.3 476393 477595 D integrase 476393..477595 Lactobacillus acidophilus NCFM 3252292 YP_193401.1 CDS LBA0485 NC_006814.3 477674 477814 D hypothetical protein 477674..477814 Lactobacillus acidophilus NCFM 3252930 YP_193402.1 CDS LBA0486 NC_006814.3 477764 478159 R hypothetical protein complement(477764..478159) Lactobacillus acidophilus NCFM 3252705 YP_193403.1 CDS LBA0487 NC_006814.3 478246 478461 R hypothetical protein complement(478246..478461) Lactobacillus acidophilus NCFM 3252136 YP_193404.1 CDS LBA0488 NC_006814.3 478565 478951 D protein kinase; hypothetical protein 478565..478951 Lactobacillus acidophilus NCFM 3252278 YP_193405.1 CDS LBA0489 NC_006814.3 478997 479866 D serine-threonine protein phosphatase 478997..479866 Lactobacillus acidophilus NCFM 3252749 YP_193406.1 CDS LBA0490 NC_006814.3 479955 480071 R hypothetical protein complement(479955..480071) Lactobacillus acidophilus NCFM 3252458 YP_193407.1 CDS celB NC_006814.3 480310 481647 D cellobiose PTS, EIIC; PTS system cellobiose-specific transporter subunit IIC 480310..481647 Lactobacillus acidophilus NCFM 3252567 YP_193408.1 CDS LBA0492 NC_006814.3 481647 482540 D hypothetical protein 481647..482540 Lactobacillus acidophilus NCFM 3252137 YP_193409.1 CDS LBA0493 NC_006814.3 482878 483573 D aggregation promoting factor; aggregation promoting protein 482878..483573 Lactobacillus acidophilus NCFM 3252926 YP_193410.1 CDS LBA0494 NC_006814.3 483725 484792 D surface exclusion protein 483725..484792 Lactobacillus acidophilus NCFM 3252646 YP_193411.1 CDS LBA0495 NC_006814.3 484817 485398 D phosphoglycerate mutase 484817..485398 Lactobacillus acidophilus NCFM 3252779 YP_193412.1 CDS LBA0496 NC_006814.3 485399 485971 D phosphoglycerate mutase 485399..485971 Lactobacillus acidophilus NCFM 3252906 YP_193413.1 CDS LBA0497 NC_006814.3 486057 486716 D hypothetical protein 486057..486716 Lactobacillus acidophilus NCFM 3252267 YP_193414.1 CDS LBA0498 NC_006814.3 486725 487024 D glycerophosphoryl diester phosphodiesterase 486725..487024 Lactobacillus acidophilus NCFM 3252288 YP_193415.1 CDS msmR NC_006814.3 487489 488493 D transcriptional repressor MsmR; msm operon repressor 487489..488493 Lactobacillus acidophilus NCFM 3252821 YP_193416.1 CDS msmE NC_006814.3 488692 489987 D MsmE; sugar ABC transporter substrate-binding protein 488692..489987 Lactobacillus acidophilus NCFM 3252767 YP_193417.1 CDS msmF NC_006814.3 490008 490892 D MsmF; ABC transporter permease 490008..490892 Lactobacillus acidophilus NCFM 3252847 YP_193418.1 CDS msmG NC_006814.3 490885 491742 D MsmG; ABC transporter permease 490885..491742 Lactobacillus acidophilus NCFM 3252194 YP_193419.1 CDS bfrA NC_006814.3 491742 493034 D BfrA; fructosidase 491742..493034 Lactobacillus acidophilus NCFM 3252258 YP_193420.1 CDS msmK NC_006814.3 493046 494152 D MsmK; ABC transporter nucleotide binding protein 493046..494152 Lactobacillus acidophilus NCFM 3252909 YP_193421.1 CDS gtfA NC_006814.3 494279 495721 D GtfA; sucrose phosphorylase 494279..495721 Lactobacillus acidophilus NCFM 3252697 YP_193422.1 CDS LBA0508 NC_006814.3 496300 496809 D hypothetical protein 496300..496809 Lactobacillus acidophilus NCFM 3252226 YP_193423.1 CDS LBA0509 NC_006814.3 496739 496885 D hypothetical protein 496739..496885 Lactobacillus acidophilus NCFM 3252056 YP_193424.1 CDS pfoR NC_006814.3 497648 498691 D PfoR; regulatory protein 497648..498691 Lactobacillus acidophilus NCFM 3252798 YP_193425.2 CDS slpX NC_006814.3 498965 500464 D SlpX protein 498965..500464 Lactobacillus acidophilus NCFM 3253051 YP_193428.1 CDS LBA0515 NC_006814.3 500981 502096 D hypothetical protein 500981..502096 Lactobacillus acidophilus NCFM 3252451 YP_193429.1 CDS gntR NC_006814.3 502190 502891 D transcriptional regulator 502190..502891 Lactobacillus acidophilus NCFM 3252233 YP_193430.1 CDS tagD NC_006814.3 502927 503313 R COG0615 Cytidylyltransferase; glycerol-3-phosphate cytidyltransferase complement(502927..503313) Lactobacillus acidophilus NCFM 3252869 YP_193431.1 CDS tagA NC_006814.3 503443 504171 D UDP-N-acetyl-D-mannosamine transferase 503443..504171 Lactobacillus acidophilus NCFM 3252450 YP_193432.1 CDS LBA0520 NC_006814.3 504181 505272 D COG0438 Glycosyltransferase; galactosyltransferase 504181..505272 Lactobacillus acidophilus NCFM 3252564 YP_193433.1 CDS nadC NC_006814.3 505364 506842 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 505364..506842 Lactobacillus acidophilus NCFM 3252506 YP_193434.1 CDS nadE NC_006814.3 506839 507669 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 506839..507669 Lactobacillus acidophilus NCFM 3252216 YP_193435.1 CDS pacL NC_006814.3 507861 510533 D COG0474 Cation transport ATPase; cation-transporting P-type ATPase 507861..510533 Lactobacillus acidophilus NCFM 3252850 YP_193436.1 CDS rodC NC_006814.3 510624 511778 D COG1887 glycosyl-glycerophosphate transferases involved in teichoic acid biosynthesis TagF-TagB-EpsJ-RodC; teichoic acid biosynthesis protein 510624..511778 Lactobacillus acidophilus NCFM 3252568 YP_193437.1 CDS epsU NC_006814.3 511783 513213 D capsular polysaccharide synthesis protein 511783..513213 Lactobacillus acidophilus NCFM 3252128 YP_193438.1 CDS LBA0526 NC_006814.3 513216 513914 D CpsIVN; glycosyltransferase 513216..513914 Lactobacillus acidophilus NCFM 3252619 YP_193439.1 CDS acmA NC_006814.3 514617 515264 D COG1705 Muramidase (flagellum-specific); N-acetylmuramidase 514617..515264 Lactobacillus acidophilus NCFM 3252211 YP_193440.1 CDS pcrA NC_006814.3 515352 517592 D ATP-dependent helicase 515352..517592 Lactobacillus acidophilus NCFM 3252189 YP_193441.1 CDS dnlJ NC_006814.3 517625 519631 D DNA ligase 517625..519631 Lactobacillus acidophilus NCFM 3252290 YP_193442.1 CDS LBA0530 NC_006814.3 519646 520794 D hypothetical protein 519646..520794 Lactobacillus acidophilus NCFM 3252912 YP_193443.1 CDS gatC NC_006814.3 520806 521114 D Glu-tRNA(Gln) amidotransferase subunit C 520806..521114 Lactobacillus acidophilus NCFM 3252659 YP_193444.1 CDS gatA NC_006814.3 521114 522553 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 521114..522553 Lactobacillus acidophilus NCFM 3252297 YP_193445.1 CDS gatB NC_006814.3 522558 523988 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 522558..523988 Lactobacillus acidophilus NCFM 3253001 YP_193446.1 CDS LBA0534 NC_006814.3 524014 524934 D similar to YegS from E. coli; lipid kinase 524014..524934 Lactobacillus acidophilus NCFM 3252262 YP_193449.1 CDS LBA0537 NC_006814.3 525852 526193 D serpin (40.6 kD) (srp-3); hypothetical protein 525852..526193 Lactobacillus acidophilus NCFM 3252739 YP_193450.1 CDS LBA0538 NC_006814.3 526229 527605 R Na(+)-H(+) antiporter; Na+-H+-exchanging protein complement(526229..527605) Lactobacillus acidophilus NCFM 3252201 YP_193451.1 CDS LBA0539 NC_006814.3 527971 529323 D RNA methyltransferase 527971..529323 Lactobacillus acidophilus NCFM 3252768 YP_193452.1 CDS LBA0540 NC_006814.3 529805 530209 D hypothetical protein 529805..530209 Lactobacillus acidophilus NCFM 3252113 YP_193453.1 CDS cadA NC_006814.3 530433 532334 D potential frameshift to 542; CadA; COG2217 Cation transport ATPase; cadmium-transporting ATPase 530433..532334 Lactobacillus acidophilus NCFM 3253034 YP_193454.1 CDS LBA0542 NC_006814.3 532360 532590 D potential frameshift to 541; COG2608 Copper chaperone; heavy-metal-transporting ATPase 532360..532590 Lactobacillus acidophilus NCFM 3252352 YP_193455.1 CDS LBA0543 NC_006814.3 532590 533132 D hypothetical protein 532590..533132 Lactobacillus acidophilus NCFM 3253010 YP_193456.1 CDS LBA0544 NC_006814.3 533152 533787 D COG0664 cAMP-binding protein -catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; transcriptional regulator 533152..533787 Lactobacillus acidophilus NCFM 3252395 YP_193457.1 CDS LBA0545 NC_006814.3 533869 534456 D COG1573 Uracil-DNA glycosylase; hypothetical protein 533869..534456 Lactobacillus acidophilus NCFM 3252053 YP_193459.1 CDS LBA0547 NC_006814.3 535200 536216 R potential frameshift to 548; site-specific recombinase complement(535200..536216) Lactobacillus acidophilus NCFM 3252851 YP_193460.1 CDS LBA0548 NC_006814.3 536234 536767 R potential frameshift to 547; site-specific recombinase complement(536234..536767) Lactobacillus acidophilus NCFM 3252268 YP_193461.1 CDS LBA0549 NC_006814.3 536760 537689 R potential frameshift to 548; site-specific recombinase complement(536760..537689) Lactobacillus acidophilus NCFM 3252737 YP_193462.1 CDS LBA0550 NC_006814.3 537721 538053 R COG4695 Phage-related protein; portal protein complement(537721..538053) Lactobacillus acidophilus NCFM 3252903 YP_193463.1 CDS LBA0551 NC_006814.3 538338 538838 D conserved hypothetical protein; acetyltransferase 538338..538838 Lactobacillus acidophilus NCFM 3252561 YP_193464.1 CDS LBA0552 NC_006814.3 539329 540795 D multidrug transporter 539329..540795 Lactobacillus acidophilus NCFM 3252686 YP_193465.1 CDS plnI NC_006814.3 540836 541594 R PlnI; hypothetical protein complement(540836..541594) Lactobacillus acidophilus NCFM 3252831 YP_193466.1 CDS LBA0554 NC_006814.3 541605 542117 R COG1309 transcriptional regulator; transcriptional regulator complement(541605..542117) Lactobacillus acidophilus NCFM 3253022 YP_193467.1 CDS LBA0555 NC_006814.3 542226 543998 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 542226..543998 Lactobacillus acidophilus NCFM 3252089 YP_193468.1 CDS LBA0556 NC_006814.3 544625 545062 D potential frameshift to 557; hypothetical protein; acetyltransferase 544625..545062 Lactobacillus acidophilus NCFM 3253039 YP_193469.1 CDS LBA0557 NC_006814.3 545031 545141 D hypothetical protein 545031..545141 Lactobacillus acidophilus NCFM 3252221 YP_193470.1 CDS LBA0558 NC_006814.3 545265 546101 D aldehyde reductase 545265..546101 Lactobacillus acidophilus NCFM 3252873 YP_193471.1 CDS LBA0559 NC_006814.3 546284 546943 D potential frameshift to 560; ABC transporter ATP-binding protein/permease component 546284..546943 Lactobacillus acidophilus NCFM 3253040 YP_193472.1 CDS LBA0560 NC_006814.3 546980 547714 D potential frameshift to 559; ABC transporter ATP-binding protein/permease component 546980..547714 Lactobacillus acidophilus NCFM 3252577 YP_193473.1 CDS LBA0561 NC_006814.3 547777 547872 D hypothetical protein 547777..547872 Lactobacillus acidophilus NCFM 3252994 YP_193474.1 CDS LBA0562 NC_006814.3 547922 549256 R COG2233 Xanthine-uracil permeases; uracil permease complement(547922..549256) Lactobacillus acidophilus NCFM 3252947 YP_193475.1 CDS pyrR NC_006814.3 549268 549798 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(549268..549798) Lactobacillus acidophilus NCFM 3252900 YP_193476.1 CDS LBA0564 NC_006814.3 550000 550422 R potential frameshift to 565; HAD family hydrolase complement(550000..550422) Lactobacillus acidophilus NCFM 3253032 YP_193477.1 CDS LBA0565 NC_006814.3 550479 550790 R potential frameshift to 564; COG0561 Predicted hydrolases of the HAD superfamily; HAD family hydrolase complement(550479..550790) Lactobacillus acidophilus NCFM 3252951 YP_193478.1 CDS LBA0566 NC_006814.3 550972 552387 D multidrug transporter 550972..552387 Lactobacillus acidophilus NCFM 3253037 YP_193479.1 CDS LBA0567 NC_006814.3 552410 553615 R multidrug resistance efflux pump complement(552410..553615) Lactobacillus acidophilus NCFM 3252270 YP_193480.1 CDS LBA0568 NC_006814.3 553716 554654 D COG0679 Predicted permeases; malate permease 553716..554654 Lactobacillus acidophilus NCFM 3253038 YP_193481.1 CDS LBA0569 NC_006814.3 554691 555773 D peptidase, M42 family; aminopeptidase 554691..555773 Lactobacillus acidophilus NCFM 3253042 YP_193482.1 CDS LBA0570 NC_006814.3 555867 557492 D ABC transporter ATP-binding protein 555867..557492 Lactobacillus acidophilus NCFM 3252852 YP_193483.1 CDS LBA0571 NC_006814.3 557591 558367 D Type II restriction enzyme HgiEI (Endonuclease HgiEI) (R.HgiEI); hypothetical protein 557591..558367 Lactobacillus acidophilus NCFM 3253021 YP_193484.1 CDS glnH NC_006814.3 558432 559250 R glutaminebinding protein; glutamine ABC transporter complement(558432..559250) Lactobacillus acidophilus NCFM 3253023 YP_193485.1 CDS LBA0573 NC_006814.3 559448 559891 D transcriptional regulator 559448..559891 Lactobacillus acidophilus NCFM 3253033 YP_193486.1 CDS LBA0574 NC_006814.3 559891 561621 D ABC transporter ATP-binding protein/permease 559891..561621 Lactobacillus acidophilus NCFM 3253020 YP_193487.1 CDS LBA0575 NC_006814.3 561621 563390 D ABC transporter ATP-binding protein/permease 561621..563390 Lactobacillus acidophilus NCFM 3252990 YP_193488.1 CDS LBA0576 NC_006814.3 563558 564136 D hypothetical protein 563558..564136 Lactobacillus acidophilus NCFM 3252375 YP_193489.1 CDS LBA0577 NC_006814.3 564181 564810 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(564181..564810) Lactobacillus acidophilus NCFM 3252867 YP_193490.1 CDS glnQ NC_006814.3 565475 566215 D GlnQ; glutamine ABC transporter ATP-binding protein 565475..566215 Lactobacillus acidophilus NCFM 3252870 YP_193491.1 CDS glnH NC_006814.3 566229 567047 D GlnH; glutamine-binding protein 566229..567047 Lactobacillus acidophilus NCFM 3252954 YP_193492.1 CDS glnM NC_006814.3 567047 567688 D GlnM; glutamine ABC transporter permease 567047..567688 Lactobacillus acidophilus NCFM 3252770 YP_193493.1 CDS glnP NC_006814.3 567703 568359 D GlnP; glutamine ABC transporter membrane protein 567703..568359 Lactobacillus acidophilus NCFM 3252345 YP_193494.1 CDS LBA0583 NC_006814.3 568438 569358 D similar to lmo2804; hypothetical protein 568438..569358 Lactobacillus acidophilus NCFM 3252656 YP_193495.1 CDS LBA0584 NC_006814.3 569355 569798 D COG2966 Uncharacterized conserved protein; hypothetical protein 569355..569798 Lactobacillus acidophilus NCFM 3252077 YP_193496.1 CDS LBA0585 NC_006814.3 569961 571259 R glycerol-3-phosphate ABC transporter complement(569961..571259) Lactobacillus acidophilus NCFM 3252466 YP_193497.1 CDS LBA0586 NC_006814.3 571419 572222 D COG1085 Galactose-1-phosphate uridylyltransferase; galactose-1-phosphate uridylyltransferase 571419..572222 Lactobacillus acidophilus NCFM 3252220 YP_193498.1 CDS rbsK NC_006814.3 572309 573232 D RbsK; ribokinase 572309..573232 Lactobacillus acidophilus NCFM 3252857 YP_193499.1 CDS rpiA NC_006814.3 573233 573925 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 573233..573925 Lactobacillus acidophilus NCFM 3252540 YP_193500.1 CDS LBA0590 NC_006814.3 574077 576092 D COG3158 K+ transporter; potassium uptake protein Kup 574077..576092 Lactobacillus acidophilus NCFM 3252078 YP_193501.1 CDS iunH NC_006814.3 576206 577132 D COG1957 Inosine-uridine nucleoside N-ribohydrolase; nucleoside hydrolase 576206..577132 Lactobacillus acidophilus NCFM 3252100 YP_193502.1 CDS gntR NC_006814.3 577135 577860 D transcriptional regulator 577135..577860 Lactobacillus acidophilus NCFM 3252370 YP_193503.1 CDS LBA0593 NC_006814.3 578166 578798 D COG1396 Predicted transcriptional regulators; transcriptional regulator 578166..578798 Lactobacillus acidophilus NCFM 3252639 YP_193504.1 CDS LBA0594 NC_006814.3 578842 580458 D ABC transporter ATP-binding protein 578842..580458 Lactobacillus acidophilus NCFM 3252361 YP_193505.1 CDS LBA0595 NC_006814.3 580503 581321 R hypothetical protein complement(580503..581321) Lactobacillus acidophilus NCFM 3252884 YP_193506.1 CDS marR NC_006814.3 581451 581891 D COG1846 transcriptional regulators; transcriptional regulator 581451..581891 Lactobacillus acidophilus NCFM 3252584 YP_193507.1 CDS LBA0597 NC_006814.3 581970 583727 D multidrug resistance ABC transporter ATP binding protein 581970..583727 Lactobacillus acidophilus NCFM 3252555 YP_193508.1 CDS LBA0598 NC_006814.3 583832 584188 R hypothetical protein complement(583832..584188) Lactobacillus acidophilus NCFM 3252914 YP_193509.1 CDS LBA0599 NC_006814.3 584194 584958 R transcriptional regulator complement(584194..584958) Lactobacillus acidophilus NCFM 3252709 YP_193510.1 CDS LBA0600 NC_006814.3 585252 587651 D phosphoketolase 585252..587651 Lactobacillus acidophilus NCFM 3253004 YP_193511.1 CDS LBA0601 NC_006814.3 587713 588561 D serine protease 587713..588561 Lactobacillus acidophilus NCFM 3252379 YP_193512.1 CDS LBA0602 NC_006814.3 588692 589972 D bacteriocin production-related histidine kinase 588692..589972 Lactobacillus acidophilus NCFM 3252944 YP_193513.1 CDS LBA0603 NC_006814.3 589978 590775 D AbpR; response regulator bacteriocinproduction-related 589978..590775 Lactobacillus acidophilus NCFM 3253043 YP_193514.1 CDS plnI NC_006814.3 590842 592050 D PlnI; immunity protein 590842..592050 Lactobacillus acidophilus NCFM 3252795 YP_193515.1 CDS LBA0605 NC_006814.3 592203 593012 R hydrolase complement(592203..593012) Lactobacillus acidophilus NCFM 3252991 YP_193516.1 CDS LBA0606 NC_006814.3 593543 595423 D PTS system arbutin-like transporter subunit IIBC 593543..595423 Lactobacillus acidophilus NCFM 3252644 YP_193517.1 CDS LBA0607 NC_006814.3 595485 596297 D similar to hypothetical protein; transcriptional regulator 595485..596297 Lactobacillus acidophilus NCFM 3252430 YP_193518.1 CDS LBA0608 NC_006814.3 596281 596778 D transporter accessory protein; hypothetical protein 596281..596778 Lactobacillus acidophilus NCFM 3252929 YP_193519.1 CDS LBA0609 NC_006814.3 596799 597284 D PTS system transporter subunit IIABC 596799..597284 Lactobacillus acidophilus NCFM 3252407 YP_193520.1 CDS LBA0610 NC_006814.3 597409 597675 D hypothetical protein 597409..597675 Lactobacillus acidophilus NCFM 3253052 YP_193521.1 CDS LBA0611 NC_006814.3 597710 598366 D COG0778 Nitroreductase; nitroreductase 597710..598366 Lactobacillus acidophilus NCFM 3253112 YP_193522.1 CDS LBA0612 NC_006814.3 598461 599813 D transporter 598461..599813 Lactobacillus acidophilus NCFM 3253000 YP_193523.1 CDS hprT NC_006814.3 599922 600491 D COG0634 Hypoxanthine-guanine phosphoribosyltransferase; hypothetical protein 599922..600491 Lactobacillus acidophilus NCFM 3252891 YP_193524.1 CDS LBA0614 NC_006814.3 600545 601927 R transposase complement(600545..601927) Lactobacillus acidophilus NCFM 3252680 YP_193525.1 CDS LBA0615 NC_006814.3 601981 603285 R COG0531 Amino acid transporters; amino acid permease complement(601981..603285) Lactobacillus acidophilus NCFM 3252738 YP_193526.1 CDS LBA0616 NC_006814.3 603391 604095 D COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); hypothetical protein 603391..604095 Lactobacillus acidophilus NCFM 3252728 YP_193527.1 CDS LBA0617 NC_006814.3 604095 605333 D ATP-dependent RNA helicase 604095..605333 Lactobacillus acidophilus NCFM 3252298 YP_193528.1 CDS ptcC NC_006814.3 605330 606655 D PTS system cellobiose-specific transporter subunit IIC 605330..606655 Lactobacillus acidophilus NCFM 3252132 YP_193529.1 CDS LBA0619 NC_006814.3 606973 607077 D hypothetical protein 606973..607077 Lactobacillus acidophilus NCFM 3252818 YP_193530.1 CDS LBA0620 NC_006814.3 607121 608263 D potential frameshift to 619; UDP-N-acetylglucosamine 2-epimerase 607121..608263 Lactobacillus acidophilus NCFM 3252445 YP_193531.1 CDS gtcA NC_006814.3 608276 608800 R GtcA; cellwall teichoic acid glycosylation protein complement(608276..608800) Lactobacillus acidophilus NCFM 3252106 YP_193532.1 CDS LBA0622 NC_006814.3 608793 609239 R COG0716 Flavodoxins; flavodoxin complement(608793..609239) Lactobacillus acidophilus NCFM 3252815 YP_193533.1 CDS ampM NC_006814.3 609383 610210 D AmpM; COG0024 Methionine aminopeptidase; methionine aminopeptidase 609383..610210 Lactobacillus acidophilus NCFM 3252504 YP_193534.1 CDS LBA0624 NC_006814.3 610219 611145 D COG1295 Predicted membrane protein; hypothetical protein 610219..611145 Lactobacillus acidophilus NCFM 3252062 YP_193535.1 CDS LBA0625 NC_006814.3 611205 612107 D COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 611205..612107 Lactobacillus acidophilus NCFM 3253049 YP_193536.1 CDS thil NC_006814.3 612217 613374 D COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA C-acetyltransferase thil 612217..613374 Lactobacillus acidophilus NCFM 3252766 YP_193537.1 CDS hmdH NC_006814.3 613374 614585 D HmdH; COG1257 Hydroxymethylglutaryl-CoA reductase; hydroxymethylglutaryl-CoA reductase 613374..614585 Lactobacillus acidophilus NCFM 3252708 YP_193538.1 CDS hmcS NC_006814.3 614586 615749 D HmcS; COG3425 3-hydroxy-3-methylglutaryl CoA synthase; hydroxymethylglutaryl-CoA synthase 614586..615749 Lactobacillus acidophilus NCFM 3252698 YP_193539.1 CDS LBA0629 NC_006814.3 615784 616110 R GcpE protein; hypothetical protein complement(615784..616110) Lactobacillus acidophilus NCFM 3252756 YP_193540.1 CDS LBA0630 NC_006814.3 616202 617119 D hypothetical protein 616202..617119 Lactobacillus acidophilus NCFM 3252777 YP_193541.1 CDS LBA0631 NC_006814.3 617353 617457 D hypothetical protein 617353..617457 Lactobacillus acidophilus NCFM 3252759 YP_193542.1 CDS LBA0632 NC_006814.3 617543 618925 R TrmA; RNA methyltransferase complement(617543..618925) Lactobacillus acidophilus NCFM 3252468 YP_193543.1 CDS recX NC_006814.3 619051 619863 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 619051..619863 Lactobacillus acidophilus NCFM 3252162 YP_193544.1 CDS LBA0634 NC_006814.3 619873 620349 D hypothetical protein 619873..620349 Lactobacillus acidophilus NCFM 3252892 YP_193545.1 CDS LBA0635 NC_006814.3 620918 621781 D transporter protein - hemolysin 620918..621781 Lactobacillus acidophilus NCFM 3252186 YP_193546.1 CDS prfC NC_006814.3 621781 623352 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 621781..623352 Lactobacillus acidophilus NCFM 3253098 YP_193547.1 CDS LBA0637 NC_006814.3 623417 623698 R hypothetical protein complement(623417..623698) Lactobacillus acidophilus NCFM 3252824 YP_193548.1 CDS clpE NC_006814.3 623869 626055 R ClpE; ATP-dependent Clp protease, ATP-binding subunit complement(623869..626055) Lactobacillus acidophilus NCFM 3252896 YP_193549.1 CDS ptsH NC_006814.3 626544 626810 D PthP; COG1925 Phosphotransferase system, HPr-related protein; phosphocarrier protein HPr 626544..626810 Lactobacillus acidophilus NCFM 3252285 YP_193550.1 CDS ptsI NC_006814.3 626810 628543 D p-enolpyruvate-protein p-transferase PTSI 626810..628543 Lactobacillus acidophilus NCFM 3252693 YP_193551.1 CDS arsC NC_006814.3 628754 629152 D ArsC; arsenate reductase 628754..629152 Lactobacillus acidophilus NCFM 3252479 YP_193552.1 CDS mecA NC_006814.3 629297 630037 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 629297..630037 Lactobacillus acidophilus NCFM 3252391 YP_193553.1 CDS coiA NC_006814.3 630121 630984 D CoiA; COG4469 Competence protein; competence protein 630121..630984 Lactobacillus acidophilus NCFM 3253027 YP_193554.1 CDS LBA0644 NC_006814.3 630981 631601 R hypothetical protein complement(630981..631601) Lactobacillus acidophilus NCFM 3252241 YP_193555.1 CDS LBA0645 NC_006814.3 631681 632295 R hypothetical protein complement(631681..632295) Lactobacillus acidophilus NCFM 3252794 YP_193556.1 CDS LBA0646 NC_006814.3 632372 633004 D GTP pyrophosphokinase 632372..633004 Lactobacillus acidophilus NCFM 3252716 YP_193557.1 CDS ppnK NC_006814.3 633001 633804 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 633001..633804 Lactobacillus acidophilus NCFM 3252524 YP_193558.1 CDS rluD NC_006814.3 633797 634699 D RluD; ribosomal large subunit pseudouridine synthase 633797..634699 Lactobacillus acidophilus NCFM 3252286 YP_193559.1 CDS LBA0649 NC_006814.3 634806 636581 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 634806..636581 Lactobacillus acidophilus NCFM 3252762 YP_193560.1 CDS LBA0650 NC_006814.3 636608 637300 R COG0398 Uncharacterized conserved protein; hypothetical protein complement(636608..637300) Lactobacillus acidophilus NCFM 3252676 YP_193561.1 CDS LBA0651 NC_006814.3 637393 638421 R COG2706 3-carboxymuconate cyclase; isomerase complement(637393..638421) Lactobacillus acidophilus NCFM 3252121 YP_193562.1 CDS pacL NC_006814.3 638578 641337 D PacL; COG0474 Cation transport ATPase; H+-K+-exchanging ATPase 638578..641337 Lactobacillus acidophilus NCFM 3252423 YP_193563.1 CDS pthA NC_006814.3 641407 641787 D PthA; phosphotransferase system enzyme II 641407..641787 Lactobacillus acidophilus NCFM 3253055 YP_193564.1 CDS LBA0656 NC_006814.3 641803 642990 D COG0628 Predicted permease; permease 641803..642990 Lactobacillus acidophilus NCFM 3252757 YP_193565.1 CDS LBA0657 NC_006814.3 643053 643607 D rRNA methylase 643053..643607 Lactobacillus acidophilus NCFM 3252163 YP_193566.1 CDS LBA0658 NC_006814.3 643609 643998 D hypothetical protein 643609..643998 Lactobacillus acidophilus NCFM 3252887 YP_193567.1 CDS LBA0659 NC_006814.3 644021 646456 D SpoIIIe; DNA translocase FtsK 644021..646456 Lactobacillus acidophilus NCFM 3252018 YP_193568.1 CDS LBA0660 NC_006814.3 646443 647657 D COG0612 Predicted Zn-dependent peptidases; protease 646443..647657 Lactobacillus acidophilus NCFM 3252871 YP_193569.1 CDS LBA0661 NC_006814.3 647654 648907 D COG0612 Predicted Zn-dependent peptidases; protease 647654..648907 Lactobacillus acidophilus NCFM 3251188 YP_193570.1 CDS fabG NC_006814.3 648912 649640 D FabG; 3-oxoacyl-ACP reductase 648912..649640 Lactobacillus acidophilus NCFM 3251189 YP_193571.1 CDS LBA0663 NC_006814.3 649708 650832 D transcriptional regulator 649708..650832 Lactobacillus acidophilus NCFM 3251190 YP_193572.1 CDS pgsA NC_006814.3 650855 651415 D PgsA; CDP-diacylglycerol- phosphatephosphatidyltransferase 650855..651415 Lactobacillus acidophilus NCFM 3251191 YP_193573.1 CDS recA NC_006814.3 651592 652683 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 651592..652683 Lactobacillus acidophilus NCFM 3251200 YP_193574.1 CDS ymdA NC_006814.3 652801 654432 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 652801..654432 Lactobacillus acidophilus NCFM 3251199 YP_193575.1 CDS LBA0668 NC_006814.3 654533 655702 D RgpG; undecaprenyl-phosphaten-acetyl- glucosaminyltransfera se 654533..655702 Lactobacillus acidophilus NCFM 3251207 YP_193576.1 CDS LBA0669 NC_006814.3 655728 656390 R YvyE; hypothetical protein complement(655728..656390) Lactobacillus acidophilus NCFM 3251482 YP_193577.1 CDS LBA0670 NC_006814.3 656433 657716 D ComFA; ComF1; competence protein 656433..657716 Lactobacillus acidophilus NCFM 3251222 YP_193578.1 CDS LBA0671 NC_006814.3 657713 658408 D ComFC; COG1040 Predicted amidophosphoribosyltransferases; competence protein 657713..658408 Lactobacillus acidophilus NCFM 3251221 YP_193579.1 CDS yvyD NC_006814.3 658491 659033 D YvyD; phosphate starvation inducible protein stressrelated 658491..659033 Lactobacillus acidophilus NCFM 3251220 YP_193580.1 CDS secA NC_006814.3 659172 661571 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 659172..661571 Lactobacillus acidophilus NCFM 3251228 YP_193581.1 CDS LBA0674 NC_006814.3 661748 662746 D RF2; peptide chain release factor 2 661748..662746 Lactobacillus acidophilus NCFM 3251240 YP_193582.1 CDS LBA0675 NC_006814.3 662754 663029 D MP1; hypothetical protein 662754..663029 Lactobacillus acidophilus NCFM 3251239 YP_193583.1 CDS ptsK NC_006814.3 663045 664013 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 663045..664013 Lactobacillus acidophilus NCFM 3251241 YP_193584.1 CDS LBA0677 NC_006814.3 664003 664845 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 664003..664845 Lactobacillus acidophilus NCFM 3251248 YP_193585.1 CDS gpsA NC_006814.3 664885 665904 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 664885..665904 Lactobacillus acidophilus NCFM 3251486 YP_193586.1 CDS trxB NC_006814.3 665981 666907 D TrxB; COG0492 Thioredoxin reductase; thioredoxin reductase 665981..666907 Lactobacillus acidophilus NCFM 3251218 YP_193587.1 CDS glgB NC_006814.3 667085 669001 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 667085..669001 Lactobacillus acidophilus NCFM 3251253 YP_193588.1 CDS glgC NC_006814.3 669017 670162 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 669017..670162 Lactobacillus acidophilus NCFM 3251252 YP_193589.1 CDS glgD NC_006814.3 670152 671294 D GlgD; Required for glycogen biosynthesis; glucose-1-phosphate adenylyltransferase 670152..671294 Lactobacillus acidophilus NCFM 3251257 YP_193590.1 CDS glgA NC_006814.3 671304 672734 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 671304..672734 Lactobacillus acidophilus NCFM 3251261 YP_193591.1 CDS LBA0685 NC_006814.3 672753 675164 D glycogen phosphorylase 672753..675164 Lactobacillus acidophilus NCFM 3251260 YP_193592.1 CDS LBA0686 NC_006814.3 675164 676933 D amylopullulanase 675164..676933 Lactobacillus acidophilus NCFM 3251263 YP_193593.1 CDS LBA0687 NC_006814.3 677052 678776 D COG1109 Phosphomannomutase; phosphoglucomutase 677052..678776 Lactobacillus acidophilus NCFM 3251266 YP_193594.1 CDS uvrB NC_006814.3 678879 680930 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 678879..680930 Lactobacillus acidophilus NCFM 3251267 YP_193595.1 CDS uvrA NC_006814.3 680917 683757 D UvrA; excinuclease subunit A 680917..683757 Lactobacillus acidophilus NCFM 3251349 YP_193596.1 CDS LBA0690 NC_006814.3 683820 684362 D COG3247 Uncharacterized conserved protein; hypothetical protein 683820..684362 Lactobacillus acidophilus NCFM 3251270 YP_193597.1 CDS LBA0691 NC_006814.3 684444 685325 D COG1660 Predicted P-loop-containing kinase; hypothetical protein 684444..685325 Lactobacillus acidophilus NCFM 3251276 YP_193598.1 CDS LBA0692 NC_006814.3 685335 686378 D COG0391 Uncharacterized conserved protein; hypothetical protein 685335..686378 Lactobacillus acidophilus NCFM 3251278 YP_193599.1 CDS LBA0693 NC_006814.3 686371 687306 D hypothetical protein 686371..687306 Lactobacillus acidophilus NCFM 3251283 YP_193600.1 CDS clpP NC_006814.3 687346 687933 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(687346..687933) Lactobacillus acidophilus NCFM 3251282 YP_193601.1 CDS LBA0695 NC_006814.3 688100 689752 D hypothetical protein 688100..689752 Lactobacillus acidophilus NCFM 3251287 YP_193602.1 CDS LBA0696 NC_006814.3 689813 691249 R amino acid transport protein; amino acid permease complement(689813..691249) Lactobacillus acidophilus NCFM 3251288 YP_193603.1 CDS LBA0697 NC_006814.3 691863 692894 D transcriptional regulator 691863..692894 Lactobacillus acidophilus NCFM 3251296 YP_193604.1 CDS LBA0698 NC_006814.3 692948 693964 D COG0057 Glyceraldehyde-3-phosphate dehydrogenase-erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-p dehydrogenase 692948..693964 Lactobacillus acidophilus NCFM 3251298 YP_193605.1 CDS pgk NC_006814.3 694078 695289 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 694078..695289 Lactobacillus acidophilus NCFM 3251301 YP_193606.1 CDS tpiA NC_006814.3 695315 696073 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 695315..696073 Lactobacillus acidophilus NCFM 3251300 YP_193607.1 CDS LBA0701 NC_006814.3 696391 696912 R hypothetical protein complement(696391..696912) Lactobacillus acidophilus NCFM 3251308 YP_193608.1 CDS LBA0702 NC_006814.3 696925 697800 R HAD family phosphatase complement(696925..697800) Lactobacillus acidophilus NCFM 3251309 YP_193609.1 CDS LBA0703 NC_006814.3 697868 698566 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 697868..698566 Lactobacillus acidophilus NCFM 3251315 YP_193610.1 CDS eutD NC_006814.3 698578 699567 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 698578..699567 Lactobacillus acidophilus NCFM 3251318 YP_193611.1 CDS LBA0705 NC_006814.3 699567 700046 D hypothetical protein 699567..700046 Lactobacillus acidophilus NCFM 3251319 YP_193612.1 CDS LBA0706 NC_006814.3 700121 700654 R DNA polymerase III subunit alpha complement(700121..700654) Lactobacillus acidophilus NCFM 3251321 YP_193613.1 CDS murB NC_006814.3 700750 701646 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 700750..701646 Lactobacillus acidophilus NCFM 3251327 YP_193614.1 CDS potA NC_006814.3 701705 702802 D PotA; spermidine and putrescine ABC transporter ATP-binding protein 701705..702802 Lactobacillus acidophilus NCFM 3251329 YP_193615.1 CDS potB NC_006814.3 702792 703604 D PotB; spermidine-putrescine ABC transporter permease 702792..703604 Lactobacillus acidophilus NCFM 3251333 YP_193616.1 CDS potC NC_006814.3 703601 704416 D PotC; spermidine and putrescine ABC transporter permease 703601..704416 Lactobacillus acidophilus NCFM 3251332 YP_193617.1 CDS potD NC_006814.3 704413 705486 D PotD; spermidine and putrescine periplasmatic ABC transporter 704413..705486 Lactobacillus acidophilus NCFM 3251334 YP_193618.1 CDS LBA0714 NC_006814.3 705523 706365 D COG1624 Uncharacterized conserved protein; hypothetical protein 705523..706365 Lactobacillus acidophilus NCFM 3251346 YP_193619.1 CDS LBA0715 NC_006814.3 706362 707321 D hypothetical protein 706362..707321 Lactobacillus acidophilus NCFM 3251345 YP_193620.1 CDS glmM NC_006814.3 707353 708711 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 707353..708711 Lactobacillus acidophilus NCFM 3251353 YP_193621.1 CDS LBA0717 NC_006814.3 708811 709626 D HAD superfamily hydrolase 708811..709626 Lactobacillus acidophilus NCFM 3251352 YP_193622.1 CDS LBA0718 NC_006814.3 709660 710445 D HAD superfamily hydrolase 709660..710445 Lactobacillus acidophilus NCFM 3251357 YP_193623.1 CDS LBA0720 NC_006814.3 710539 711255 D hypothetical protein 710539..711255 Lactobacillus acidophilus NCFM 3251358 YP_193624.1 CDS LBA0722 NC_006814.3 711259 711717 D phosphotyrosinase phosphatase; protein-tyrosine-phosphatase 711259..711717 Lactobacillus acidophilus NCFM 3251359 YP_193625.1 CDS LBA0723 NC_006814.3 711741 712877 R glycerate kinase complement(711741..712877) Lactobacillus acidophilus NCFM 3251362 YP_193626.1 CDS licT NC_006814.3 713104 713949 D LicT; COG3711 transcriptional antiterminator; transcription antiterminator 713104..713949 Lactobacillus acidophilus NCFM 3251365 YP_193627.1 CDS LBA0725 NC_006814.3 714074 716065 D COG1263 Phosphotransferase system IIC components, glucose-maltose-N-acetylglucosamine-specific; phosphotransferase system enzyme II 714074..716065 Lactobacillus acidophilus NCFM 3251364 YP_193628.1 CDS LBA0726 NC_006814.3 716147 717622 D COG2723 Beta-glucosidase-6-phospho-beta-glucosidase -beta-galactosidase; phospho-beta-galactosidase II 716147..717622 Lactobacillus acidophilus NCFM 3251383 YP_193629.1 CDS LBA0728 NC_006814.3 717751 718698 D hypothetical protein 717751..718698 Lactobacillus acidophilus NCFM 3251386 YP_193630.1 CDS LBA0729 NC_006814.3 718753 720378 R COG0531 Amino acid transporters; amino acid permease complement(718753..720378) Lactobacillus acidophilus NCFM 3251385 YP_193631.1 CDS LBA0730 NC_006814.3 720642 720743 D hypothetical protein 720642..720743 Lactobacillus acidophilus NCFM 3251392 YP_003864082.1 CDS LBA0730a NC_006814.3 720753 720938 D 30S ribosomal protein S14 720753..720938 Lactobacillus acidophilus NCFM 9714950 YP_193632.1 CDS LBA0732 NC_006814.3 721103 721618 D hypothetical protein 721103..721618 Lactobacillus acidophilus NCFM 3251350 YP_193633.1 CDS LBA0733 NC_006814.3 721708 722436 D COG0217 Uncharacterized conserved protein; hypothetical protein 721708..722436 Lactobacillus acidophilus NCFM 3251398 YP_193634.1 CDS cglA NC_006814.3 722562 723536 D CglA; competence protein 722562..723536 Lactobacillus acidophilus NCFM 3251407 YP_193635.1 CDS LBA0735 NC_006814.3 723502 724506 D ComGB; competence protein 723502..724506 Lactobacillus acidophilus NCFM 3251406 YP_193636.1 CDS LBA0737 NC_006814.3 724519 724878 D ComGC; COG4537 Competence protein ComGC; competence protein 724519..724878 Lactobacillus acidophilus NCFM 3251405 YP_193637.1 CDS LBA0738 NC_006814.3 724844 725272 D hypothetical protein 724844..725272 Lactobacillus acidophilus NCFM 3251432 YP_193638.1 CDS LBA0739 NC_006814.3 725459 726061 D hypothetical protein 725459..726061 Lactobacillus acidophilus NCFM 3251431 YP_193639.1 CDS LBA0740 NC_006814.3 726235 727236 D COG0827 Adenine-specific DNA methylase; modification methylase 726235..727236 Lactobacillus acidophilus NCFM 3251430 YP_193640.1 CDS ackB NC_006814.3 727277 728461 D AckB; acetate kinase 727277..728461 Lactobacillus acidophilus NCFM 3251371 YP_193641.1 CDS LBA0742 NC_006814.3 729095 729985 D hypothetical protein 729095..729985 Lactobacillus acidophilus NCFM 3251370 YP_193642.1 CDS LBA0743 NC_006814.3 730074 730979 D potential frameshift to 744; PLP-dependent aminotransferase 730074..730979 Lactobacillus acidophilus NCFM 3251437 YP_193643.1 CDS LBA0744 NC_006814.3 730952 731155 D potential frameshift to 743; PLP-dependent aminotransferase 730952..731155 Lactobacillus acidophilus NCFM 3251438 YP_193644.1 CDS LBA0745 NC_006814.3 731224 732189 D COG1482 Phosphomannose isomerase; mannose-6-phosphate isomerase 731224..732189 Lactobacillus acidophilus NCFM 3251439 YP_193645.1 CDS LBA0746 NC_006814.3 732616 733338 D COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator 732616..733338 Lactobacillus acidophilus NCFM 3251441 YP_193646.1 CDS LBA0747 NC_006814.3 733341 734792 D histidine kinase 733341..734792 Lactobacillus acidophilus NCFM 3251444 YP_193647.1 CDS LBA0748 NC_006814.3 734917 735291 D potential frameshift to 749; oxidoreductase 734917..735291 Lactobacillus acidophilus NCFM 3251447 YP_193648.1 CDS LBA0749 NC_006814.3 735327 735980 D potential frameshift to 748; oxidoreductase 735327..735980 Lactobacillus acidophilus NCFM 3251446 YP_193649.1 CDS LBA0750 NC_006814.3 736014 738191 R alkaline phosphatase complement(736014..738191) Lactobacillus acidophilus NCFM 3251560 YP_193650.1 CDS vanZ NC_006814.3 738333 738935 D VanZ; hypothetical protein 738333..738935 Lactobacillus acidophilus NCFM 3251453 YP_193651.1 CDS pgi NC_006814.3 739022 740359 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 739022..740359 Lactobacillus acidophilus NCFM 3252080 YP_193652.1 CDS LBA0753 NC_006814.3 740473 741861 D multi-drug-type permease 740473..741861 Lactobacillus acidophilus NCFM 3252072 YP_193653.1 CDS LBA0754 NC_006814.3 741942 742955 R b-lactamase; esterase complement(741942..742955) Lactobacillus acidophilus NCFM 3251465 YP_193654.1 CDS LBA0755 NC_006814.3 743529 743900 D COG3459 Cellobiose phosphorylase; hypothetical protein 743529..743900 Lactobacillus acidophilus NCFM 3251494 YP_193655.1 CDS LBA0757 NC_006814.3 745463 746965 R DNA primase complement(745463..746965) Lactobacillus acidophilus NCFM 3251254 YP_193656.1 CDS LBA0758 NC_006814.3 747077 747301 R conserved domain protein; prophage DNA packaging protein NU1 complement(747077..747301) Lactobacillus acidophilus NCFM 3251480 YP_193657.1 CDS LBA0759 NC_006814.3 747374 747598 R hypothetical protein complement(747374..747598) Lactobacillus acidophilus NCFM 3251478 YP_193658.1 CDS LBA0760 NC_006814.3 747602 747985 R CGI-01 protein; hypothetical protein complement(747602..747985) Lactobacillus acidophilus NCFM 3251500 YP_193659.1 CDS LBA0761 NC_006814.3 747989 748207 R hypothetical protein complement(747989..748207) Lactobacillus acidophilus NCFM 3251502 YP_193660.1 CDS LBA0762 NC_006814.3 748200 748406 R prophage Lp3 protein 4; hypothetical protein complement(748200..748406) Lactobacillus acidophilus NCFM 3253045 YP_193661.1 CDS LBA0763 NC_006814.3 748541 749092 D similar to Orf32 Bacteriophage bIL309; hypothetical protein 748541..749092 Lactobacillus acidophilus NCFM 3251412 YP_193662.1 CDS LBA0764 NC_006814.3 749258 750328 D integrase 749258..750328 Lactobacillus acidophilus NCFM 3251464 YP_193663.1 CDS LBA0765 NC_006814.3 750576 751928 R COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramyl tripeptide synthetase complement(750576..751928) Lactobacillus acidophilus NCFM 3251507 YP_193664.1 CDS LBA0766 NC_006814.3 752052 752675 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 752052..752675 Lactobacillus acidophilus NCFM 3251539 YP_193665.1 CDS prfA NC_006814.3 752691 753776 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 752691..753776 Lactobacillus acidophilus NCFM 3251514 YP_193666.1 CDS hemK NC_006814.3 753769 754611 D HemK; protoporphyrinogen oxidase 753769..754611 Lactobacillus acidophilus NCFM 3251513 YP_193667.1 CDS LBA0769 NC_006814.3 754608 755612 D Sua5 family translation factor 754608..755612 Lactobacillus acidophilus NCFM 3251512 YP_193668.1 CDS upp NC_006814.3 755699 756328 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 755699..756328 Lactobacillus acidophilus NCFM 3251533 YP_193669.1 CDS LBA0772 NC_006814.3 756451 757164 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 756451..757164 Lactobacillus acidophilus NCFM 3251532 YP_193670.1 CDS LBA0773 NC_006814.3 757185 757418 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 757185..757418 Lactobacillus acidophilus NCFM 3251546 YP_193671.1 CDS LBA0774 NC_006814.3 757475 757984 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 757475..757984 Lactobacillus acidophilus NCFM 3251547 YP_193672.1 CDS LBA0775 NC_006814.3 757984 758532 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 757984..758532 Lactobacillus acidophilus NCFM 3251545 YP_193673.1 CDS LBA0776 NC_006814.3 758547 760058 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 758547..760058 Lactobacillus acidophilus NCFM 3251553 YP_193674.1 CDS LBA0777 NC_006814.3 760069 761031 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 760069..761031 Lactobacillus acidophilus NCFM 3251556 YP_193675.1 CDS LBA0778 NC_006814.3 761054 762493 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 761054..762493 Lactobacillus acidophilus NCFM 3251562 YP_193676.1 CDS atpC NC_006814.3 762505 762945 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 762505..762945 Lactobacillus acidophilus NCFM 3251564 YP_193677.1 CDS mreB NC_006814.3 763329 764318 D MreB; rod shape-determining protein MreB 763329..764318 Lactobacillus acidophilus NCFM 3251566 YP_193678.1 CDS LBA0781 NC_006814.3 764634 764861 D hypothetical protein 764634..764861 Lactobacillus acidophilus NCFM 3251569 YP_193679.1 CDS rodA NC_006814.3 764883 766076 D RodA; rod shape-determining protein 764883..766076 Lactobacillus acidophilus NCFM 3251568 YP_193680.1 CDS LBA0783 NC_006814.3 766143 766607 R hypothetical protein complement(766143..766607) Lactobacillus acidophilus NCFM 3251580 YP_193681.1 CDS LBA0784 NC_006814.3 767249 768568 R recombination factor protein RarA complement(767249..768568) Lactobacillus acidophilus NCFM 3251581 YP_193682.1 CDS LBA0785 NC_006814.3 768571 769038 R hypothetical protein complement(768571..769038) Lactobacillus acidophilus NCFM 3251579 YP_193683.1 CDS rpsD NC_006814.3 769129 769740 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(769129..769740) Lactobacillus acidophilus NCFM 3251582 YP_193684.1 CDS LBA0788 NC_006814.3 770022 771734 D acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 770022..771734 Lactobacillus acidophilus NCFM 3251586 YP_193685.1 CDS nifS NC_006814.3 771822 772982 D family; NifS; aminotransferase 771822..772982 Lactobacillus acidophilus NCFM 3251589 YP_193686.1 CDS thiI NC_006814.3 772982 774199 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 772982..774199 Lactobacillus acidophilus NCFM 3251588 YP_193687.1 CDS LBA0791 NC_006814.3 774246 774956 D 16s pseudouridylate synthase 774246..774956 Lactobacillus acidophilus NCFM 3251591 YP_193688.1 CDS LBA0792 NC_006814.3 775118 775270 D hypothetical protein 775118..775270 Lactobacillus acidophilus NCFM 3251596 YP_193689.1 CDS LBA0793 NC_006814.3 775697 775819 D hypothetical protein 775697..775819 Lactobacillus acidophilus NCFM 3251595 YP_193690.1 CDS valS NC_006814.3 776256 778895 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 776256..778895 Lactobacillus acidophilus NCFM 3251600 YP_193691.1 CDS folC NC_006814.3 778896 780167 D FolC; COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase 778896..780167 Lactobacillus acidophilus NCFM 3251599 YP_193692.1 CDS LBA0796 NC_006814.3 780157 780834 D COG0637 Predicted phosphatase-phosphohexomutase; hydrolase 780157..780834 Lactobacillus acidophilus NCFM 3251603 YP_193693.1 CDS radC NC_006814.3 780871 781494 D RadC; DNA repair protein RadC; DNA repair protein 780871..781494 Lactobacillus acidophilus NCFM 3251609 YP_193694.1 CDS mreB NC_006814.3 781590 782594 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 781590..782594 Lactobacillus acidophilus NCFM 3251611 YP_193695.1 CDS mreC NC_006814.3 782640 783491 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 782640..783491 Lactobacillus acidophilus NCFM 3251614 YP_193696.1 CDS mreD NC_006814.3 783491 784030 D MreD; COG2891 Cell shape-determining protein; cell shape determining protein 783491..784030 Lactobacillus acidophilus NCFM 3251613 YP_193697.1 CDS LBA0802 NC_006814.3 784295 784624 D hypothetical protein 784295..784624 Lactobacillus acidophilus NCFM 3251616 YP_193698.1 CDS mraW NC_006814.3 785233 786180 D MraW; S-adenosyl-methyltransferase MraW 785233..786180 Lactobacillus acidophilus NCFM 3251619 YP_193699.1 CDS ftsL NC_006814.3 786194 786556 D FtsL; cell division protein 786194..786556 Lactobacillus acidophilus NCFM 3251621 YP_193700.1 CDS LBA0805 NC_006814.3 786556 788718 D PBP2B; penicillin-binding protein 786556..788718 Lactobacillus acidophilus NCFM 3251622 YP_193701.1 CDS mraY NC_006814.3 788725 789693 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 788725..789693 Lactobacillus acidophilus NCFM 3251626 YP_193702.1 CDS murD NC_006814.3 789697 791076 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 789697..791076 Lactobacillus acidophilus NCFM 3251625 YP_193703.1 CDS murG NC_006814.3 791079 792185 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 791079..792185 Lactobacillus acidophilus NCFM 3251627 YP_193704.1 CDS ftsQ NC_006814.3 792203 793060 D FtsQ; cell division protein 792203..793060 Lactobacillus acidophilus NCFM 3251630 YP_193705.1 CDS ftsA NC_006814.3 793121 794473 D FtsA; cell division protein 793121..794473 Lactobacillus acidophilus NCFM 3251633 YP_193706.1 CDS ftsZ NC_006814.3 794488 795846 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 794488..795846 Lactobacillus acidophilus NCFM 3251637 YP_193707.1 CDS ylmF NC_006814.3 795865 796302 D YlmF; cell division 795865..796302 Lactobacillus acidophilus NCFM 3251638 YP_193708.1 CDS ylmH NC_006814.3 796605 797405 D YlmH; cell-division protein 796605..797405 Lactobacillus acidophilus NCFM 3251642 YP_193709.1 CDS LBA0816 NC_006814.3 797381 798184 D DivIVA; cell-division initiation protein 797381..798184 Lactobacillus acidophilus NCFM 3251643 YP_193710.1 CDS ileS NC_006814.3 798407 801190 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 798407..801190 Lactobacillus acidophilus NCFM 3251646 YP_193711.1 CDS LBA0818 NC_006814.3 801190 801393 D COG1278 Cold shock protein; cold-shock protein 801190..801393 Lactobacillus acidophilus NCFM 3251648 YP_193712.1 CDS LBA0819 NC_006814.3 801412 801981 D MutT; ADP-ribose pyrophosphatase 801412..801981 Lactobacillus acidophilus NCFM 3251650 YP_193713.1 CDS LBA0820 NC_006814.3 802317 803012 D COG0775 Nucleoside phosphorylase; MTA-SAH nucleosidase 802317..803012 Lactobacillus acidophilus NCFM 3251652 YP_193714.1 CDS LBA0821 NC_006814.3 803152 803493 D hypothetical protein 803152..803493 Lactobacillus acidophilus NCFM 3251655 YP_193715.1 CDS mnmA NC_006814.3 803501 804628 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 803501..804628 Lactobacillus acidophilus NCFM 3251654 YP_193716.1 CDS LBA0823 NC_006814.3 804718 805377 D COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 804718..805377 Lactobacillus acidophilus NCFM 3251658 YP_193717.1 CDS LBA0824 NC_006814.3 805377 806021 D COG0457 FOG TPR repeat; hypothetical protein 805377..806021 Lactobacillus acidophilus NCFM 3251660 YP_193718.1 CDS LBA0825 NC_006814.3 806021 808375 D exodeoxyribonuclease V subunit alpha 806021..808375 Lactobacillus acidophilus NCFM 3251663 YP_193719.1 CDS LBA0826 NC_006814.3 808438 810117 D hypothetical protein 808438..810117 Lactobacillus acidophilus NCFM 3251666 YP_193720.1 CDS LBA0827 NC_006814.3 810148 811095 R transcriptional regulator complement(810148..811095) Lactobacillus acidophilus NCFM 3251665 YP_193721.1 CDS LBA0828 NC_006814.3 811148 812827 R metallo-b-lactamase superfamily protein complement(811148..812827) Lactobacillus acidophilus NCFM 3251671 YP_193722.1 CDS LBA0829 NC_006814.3 812834 813055 R hypothetical protein complement(812834..813055) Lactobacillus acidophilus NCFM 3251670 YP_193723.1 CDS def NC_006814.3 813398 813973 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(813398..813973) Lactobacillus acidophilus NCFM 3251675 YP_193724.1 CDS bipA NC_006814.3 814206 816050 D TypA; BipAEFTU family GTPbinding protein 814206..816050 Lactobacillus acidophilus NCFM 3251677 YP_193725.1 CDS ftsW NC_006814.3 816151 817335 D FtsW; cell division protein 816151..817335 Lactobacillus acidophilus NCFM 3251680 YP_193726.1 CDS LBA0834 NC_006814.3 817332 817676 D hypothetical protein 817332..817676 Lactobacillus acidophilus NCFM 3251679 YP_193727.1 CDS LBA0835 NC_006814.3 817673 818224 D COG0742 N6-adenine-specific methylase; hypothetical protein 817673..818224 Lactobacillus acidophilus NCFM 3251685 YP_193728.1 CDS coaD NC_006814.3 818224 818709 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 818224..818709 Lactobacillus acidophilus NCFM 3251684 YP_193729.1 CDS LBA0837 NC_006814.3 818702 819742 D hypothetical protein 818702..819742 Lactobacillus acidophilus NCFM 3251690 YP_193730.1 CDS LBA0838 NC_006814.3 819798 820481 D ComEA; competence protein 819798..820481 Lactobacillus acidophilus NCFM 3251691 YP_193731.1 CDS LBA0839 NC_006814.3 820450 822738 D ComEC; competence protein 820450..822738 Lactobacillus acidophilus NCFM 3251698 YP_193732.1 CDS LBA0840 NC_006814.3 822735 823724 D DNA polymerase III subunit delta 822735..823724 Lactobacillus acidophilus NCFM 3251697 YP_193733.1 CDS rpsT NC_006814.3 823785 824042 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(823785..824042) Lactobacillus acidophilus NCFM 3251699 YP_193734.1 CDS LBA0842 NC_006814.3 824243 824389 D RpsO; 30S ribosomal protein S15 824243..824389 Lactobacillus acidophilus NCFM 3251710 YP_193735.1 CDS LBA0843 NC_006814.3 824655 826412 D hypothetical protein 824655..826412 Lactobacillus acidophilus NCFM 3251713 YP_193736.1 CDS LBA0844 NC_006814.3 826415 827248 D hypothetical protein 826415..827248 Lactobacillus acidophilus NCFM 3251712 YP_193737.1 CDS tuf NC_006814.3 827438 828628 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 827438..828628 Lactobacillus acidophilus NCFM 3251716 YP_193738.1 CDS tig NC_006814.3 828774 830102 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 828774..830102 Lactobacillus acidophilus NCFM 3251719 YP_193739.1 CDS clpX NC_006814.3 830229 831491 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 830229..831491 Lactobacillus acidophilus NCFM 3251727 YP_193740.1 CDS engB NC_006814.3 831481 832071 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 831481..832071 Lactobacillus acidophilus NCFM 3251726 YP_193741.1 CDS dapF NC_006814.3 832103 833107 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(832103..833107) Lactobacillus acidophilus NCFM 3251730 YP_193742.1 CDS LBA0850 NC_006814.3 833119 834474 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(833119..834474) Lactobacillus acidophilus NCFM 3251733 YP_193743.1 CDS lysA NC_006814.3 834953 836260 D diaminopimelate decarboxylase 834953..836260 Lactobacillus acidophilus NCFM 3251735 YP_193744.1 CDS dapD NC_006814.3 836281 836991 D 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; tetrahydrodipicolinate succinylase 836281..836991 Lactobacillus acidophilus NCFM 3251737 YP_193745.1 CDS LBA0853 NC_006814.3 836994 838145 D amino acid amidohydrolase 836994..838145 Lactobacillus acidophilus NCFM 3251741 YP_193746.1 CDS LBA0854 NC_006814.3 838151 839086 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 838151..839086 Lactobacillus acidophilus NCFM 3251740 YP_193747.1 CDS dapB NC_006814.3 839073 839858 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 839073..839858 Lactobacillus acidophilus NCFM 3251743 YP_193748.1 CDS LBA0856 NC_006814.3 839874 841049 D COG0436 Aspartate-tyrosine-aromatic aminotransferase; aspartate aminotransferase 839874..841049 Lactobacillus acidophilus NCFM 3251746 YP_193749.1 CDS LBA0857 NC_006814.3 841049 842107 D COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 841049..842107 Lactobacillus acidophilus NCFM 3251745 YP_193750.1 CDS LBA0858 NC_006814.3 842198 843307 D penicillin-binding protein 842198..843307 Lactobacillus acidophilus NCFM 3251750 YP_193751.1 CDS LBA0860 NC_006814.3 843344 844957 R hypothetical protein complement(843344..844957) Lactobacillus acidophilus NCFM 3251751 YP_193752.1 CDS LBA0861 NC_006814.3 845299 845568 D Polyferredoxin; polyferredoxin 845299..845568 Lactobacillus acidophilus NCFM 3251754 YP_193753.1 CDS LBA0863 NC_006814.3 845582 846097 D hypothetical protein 845582..846097 Lactobacillus acidophilus NCFM 3251755 YP_193754.1 CDS LBA0864 NC_006814.3 846154 847647 D hypothetical protein 846154..847647 Lactobacillus acidophilus NCFM 3251757 YP_193755.1 CDS LBA0865 NC_006814.3 847716 848642 R COG1957 Inosine-uridine nucleoside N-ribohydrolase; nucleoside hydrolase complement(847716..848642) Lactobacillus acidophilus NCFM 3251759 YP_193756.1 CDS LBA0866 NC_006814.3 848905 849060 D aryl-alcohol dehydrogenase; dehydrogenase 848905..849060 Lactobacillus acidophilus NCFM 3251761 YP_193757.1 CDS LBA0867 NC_006814.3 849280 850083 D COG1396 Predicted transcriptional regulators; hypothetical protein 849280..850083 Lactobacillus acidophilus NCFM 3251764 YP_193758.1 CDS LBA0868 NC_006814.3 850208 850678 D hypothetical protein 850208..850678 Lactobacillus acidophilus NCFM 3251766 YP_193759.1 CDS LBA0869 NC_006814.3 850705 850911 D hypothetical protein 850705..850911 Lactobacillus acidophilus NCFM 3251768 YP_193762.1 CDS LBA0872 NC_006814.3 852052 852312 R COG2261 Predicted membrane protein; hypothetical protein complement(852052..852312) Lactobacillus acidophilus NCFM 3251416 YP_193763.1 CDS LBA0873 NC_006814.3 852324 852497 R COG3237 Uncharacterized protein conserved in bacteria; hypothetical protein complement(852324..852497) Lactobacillus acidophilus NCFM 3251772 YP_193764.1 CDS LBA0874 NC_006814.3 852717 854165 R phospho-beta-galactosidase I complement(852717..854165) Lactobacillus acidophilus NCFM 3251774 YP_193765.1 CDS gntR NC_006814.3 854251 854955 R transcriptional regulator complement(854251..854955) Lactobacillus acidophilus NCFM 3251777 YP_193766.1 CDS LBA0876 NC_006814.3 855310 855645 D PTS system cellobiose-specific transporter subunit IIC 855310..855645 Lactobacillus acidophilus NCFM 3251779 YP_193767.1 CDS LBA0877 NC_006814.3 855671 856042 D cellobiose PTS, EIIA; PTS system cellobiose-specific transporter subunit IIA 855671..856042 Lactobacillus acidophilus NCFM 3251781 YP_193768.1 CDS LBA0878 NC_006814.3 856152 856658 D hypothetical protein 856152..856658 Lactobacillus acidophilus NCFM 3251784 YP_193769.1 CDS LBA0879 NC_006814.3 857012 857782 D PTS system cellobiose-specific transporter subunit IIC 857012..857782 Lactobacillus acidophilus NCFM 3251786 YP_193770.1 CDS LBA0880 NC_006814.3 857885 858295 R hypothetical protein complement(857885..858295) Lactobacillus acidophilus NCFM 3251788 YP_193771.1 CDS LBA0881 NC_006814.3 858384 859865 R COG2723 Beta-glucosidase-6-phospho-beta-glucosidase-beta- galactosidase; phospho-beta-glucosidase complement(858384..859865) Lactobacillus acidophilus NCFM 3251790 YP_193772.1 CDS gntR NC_006814.3 859875 860597 R transcriptional regulator complement(859875..860597) Lactobacillus acidophilus NCFM 3251794 YP_193773.1 CDS LBA0883 NC_006814.3 860739 860984 R reverse transcriptase homolog; hypothetical protein complement(860739..860984) Lactobacillus acidophilus NCFM 3251793 YP_193774.1 CDS LBA0884 NC_006814.3 861033 862460 R PTS system cellobiose-specific transporter subunit IIC complement(861033..862460) Lactobacillus acidophilus NCFM 3251797 YP_193775.1 CDS LBA0885 NC_006814.3 862460 863842 R COG2723 Beta-glucosidase-6-phospho-beta-glucosidase -beta-galactosidase; beta-glucosidase complement(862460..863842) Lactobacillus acidophilus NCFM 3251796 YP_193776.1 CDS LBA0886 NC_006814.3 864028 864912 R COG1940 transcriptional regulator-sugar kinase; sugar kinase complement(864028..864912) Lactobacillus acidophilus NCFM 3251799 YP_193777.1 CDS LBA0887 NC_006814.3 865032 865520 D hypothetical protein 865032..865520 Lactobacillus acidophilus NCFM 3251800 YP_193778.1 CDS LBA0888 NC_006814.3 865595 866191 D hypothetical protein 865595..866191 Lactobacillus acidophilus NCFM 3251803 YP_193779.1 CDS eno NC_006814.3 866241 867527 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(866241..867527) Lactobacillus acidophilus NCFM 3251804 YP_193780.1 CDS LBA0890 NC_006814.3 867753 868586 D hypothetical protein 867753..868586 Lactobacillus acidophilus NCFM 3251806 YP_193781.1 CDS LBA0891 NC_006814.3 868637 869212 R COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein complement(868637..869212) Lactobacillus acidophilus NCFM 3251808 YP_193782.1 CDS bshA NC_006814.3 869317 870294 R bile salt hydrolase complement(869317..870294) Lactobacillus acidophilus NCFM 3251811 YP_193783.1 CDS LBA0893 NC_006814.3 870710 871660 R phage related protein; integrase complement(870710..871660) Lactobacillus acidophilus NCFM 3251813 YP_193784.1 CDS LBA0894 NC_006814.3 871880 872080 R hypothetical protein complement(871880..872080) Lactobacillus acidophilus NCFM 3251817 YP_193785.1 CDS LBA0895 NC_006814.3 872083 872736 R potential frameshift to 894; capsid protein complement(872083..872736) Lactobacillus acidophilus NCFM 3251820 YP_193786.1 CDS LBA0896 NC_006814.3 873265 873603 R repressor; transcriptional regulator complement(873265..873603) Lactobacillus acidophilus NCFM 3251823 YP_193787.1 CDS LBA0897 NC_006814.3 873767 873970 D Cro-like protein 873767..873970 Lactobacillus acidophilus NCFM 3251825 YP_193788.1 CDS LBA0899 NC_006814.3 874230 875621 D transporter protein 874230..875621 Lactobacillus acidophilus NCFM 3251827 YP_193789.1 CDS thyA NC_006814.3 875749 876705 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 875749..876705 Lactobacillus acidophilus NCFM 3251830 YP_193790.1 CDS dfrA NC_006814.3 876715 877218 D COG0262 Dihydrofolate reductase; dihydrofolate reductase 876715..877218 Lactobacillus acidophilus NCFM 3251831 YP_193791.1 CDS LBA0903 NC_006814.3 877297 879717 D COG0474 Cation transport ATPase; cation-transporting atpase 877297..879717 Lactobacillus acidophilus NCFM 3251833 YP_193792.1 CDS LBA0904 NC_006814.3 880089 880943 D OM lipoprotein 880089..880943 Lactobacillus acidophilus NCFM 3251835 YP_193793.1 CDS LBA0905 NC_006814.3 880958 882019 D ABC transporter ATP-binding protein 880958..882019 Lactobacillus acidophilus NCFM 3251837 YP_193794.1 CDS LBA0906 NC_006814.3 882012 882713 D ABC transporter -permease 882012..882713 Lactobacillus acidophilus NCFM 3251840 YP_193795.1 CDS fumC NC_006814.3 882913 884316 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 882913..884316 Lactobacillus acidophilus NCFM 3251843 YP_193796.1 CDS LBA0908 NC_006814.3 884330 885712 D fumarate reductase flavoprotein subunit 884330..885712 Lactobacillus acidophilus NCFM 3251845 YP_193797.1 CDS LBA0909 NC_006814.3 885868 887394 D mucus binding protein 885868..887394 Lactobacillus acidophilus NCFM 3251848 YP_193798.1 CDS ldh NC_006814.3 887481 888407 D Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 887481..888407 Lactobacillus acidophilus NCFM 3251850 YP_193799.1 CDS LBA0911 NC_006814.3 888536 889849 D COG3579 Aminopeptidase C; aminopeptidase 888536..889849 Lactobacillus acidophilus NCFM 3251853 YP_193800.1 CDS LBA0912 NC_006814.3 890101 891567 D cation transport protein; 2-oxoglutarate-malate translocator 890101..891567 Lactobacillus acidophilus NCFM 3251856 YP_193801.1 CDS LBA0913 NC_006814.3 891644 892435 D halo peroxidase; hydrolase 891644..892435 Lactobacillus acidophilus NCFM 3251858 YP_193802.1 CDS citC NC_006814.3 892525 893580 D citrate (pro-3S)-lyase ligase; citrate lyase ligase 892525..893580 Lactobacillus acidophilus NCFM 3251860 YP_193803.1 CDS citD NC_006814.3 893570 893863 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 893570..893863 Lactobacillus acidophilus NCFM 3251862 YP_193804.1 CDS citE NC_006814.3 893863 894777 D citrate lyase subunit beta 893863..894777 Lactobacillus acidophilus NCFM 3251864 YP_193805.1 CDS citF NC_006814.3 894767 896308 D citrate lyase, alpha chain; citrate lyase subunit alpha 894767..896308 Lactobacillus acidophilus NCFM 3251866 YP_193806.1 CDS citG NC_006814.3 896280 896414 D hypothetical protein 896280..896414 Lactobacillus acidophilus NCFM 3251868 YP_193807.1 CDS LBA0919 NC_006814.3 896551 897006 D integral membrane protein; hypothetical protein 896551..897006 Lactobacillus acidophilus NCFM 3251870 YP_193808.1 CDS LBA0920 NC_006814.3 897211 898044 R ABC transporter permease complement(897211..898044) Lactobacillus acidophilus NCFM 3251872 YP_193809.1 CDS LBA0921 NC_006814.3 898045 899745 R ABC transporter ATP-binding protein complement(898045..899745) Lactobacillus acidophilus NCFM 3251873 YP_193810.1 CDS LBA0922 NC_006814.3 899757 900314 R COG4720 Predicted membrane protein; hypothetical protein complement(899757..900314) Lactobacillus acidophilus NCFM 3251876 YP_193811.1 CDS LBA0923 NC_006814.3 900465 900836 D hypothetical protein 900465..900836 Lactobacillus acidophilus NCFM 3251880 YP_193812.1 CDS LBA0924 NC_006814.3 900864 901196 R copper-transporting P-type ATPase; transporter protein complement(900864..901196) Lactobacillus acidophilus NCFM 3251882 YP_193813.1 CDS LBA0925 NC_006814.3 901252 902190 R citrate lyase regulator; transcriptional regulator complement(901252..902190) Lactobacillus acidophilus NCFM 3251884 YP_193814.1 CDS LBA0927 NC_006814.3 902369 903724 D COG2966 Uncharacterized conserved protein; hypothetical protein 902369..903724 Lactobacillus acidophilus NCFM 3251888 YP_193815.1 CDS LBA0928 NC_006814.3 903774 903857 R hypothetical protein complement(903774..903857) Lactobacillus acidophilus NCFM 3251889 YP_193816.1 CDS LBA0930 NC_006814.3 903959 904468 R COG2606 Uncharacterized conserved protein; transcriptional regulator complement(903959..904468) Lactobacillus acidophilus NCFM 3251891 YP_193817.1 CDS prmA NC_006814.3 904529 905473 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 904529..905473 Lactobacillus acidophilus NCFM 3251895 YP_193818.1 CDS relA NC_006814.3 905906 908146 D RelA; COG0317 Guanosine polyphosphate pyrophosphohydrolases-synthetases; ppGpp synthetase 905906..908146 Lactobacillus acidophilus NCFM 3251898 YP_193819.1 CDS LBA0933 NC_006814.3 908146 908583 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 908146..908583 Lactobacillus acidophilus NCFM 3251900 YP_193820.1 CDS hisS NC_006814.3 908875 910161 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 908875..910161 Lactobacillus acidophilus NCFM 3251902 YP_193821.1 CDS aspS NC_006814.3 910169 912013 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 910169..912013 Lactobacillus acidophilus NCFM 3251904 YP_193822.1 CDS LBA0937 NC_006814.3 912079 913263 R PLP-dependent aminotransferase; aromatic amino acid transferase complement(912079..913263) Lactobacillus acidophilus NCFM 3251905 YP_193823.1 CDS LBA0939 NC_006814.3 913420 914613 D COG0452 Phosphopantothenoylcysteine synthetase-decarboxylase; pantothenate metabolism flavoprotein-like protein 913420..914613 Lactobacillus acidophilus NCFM 3251909 YP_193824.1 CDS LBA0940 NC_006814.3 914944 915759 D oxidoreductase, aldo-keto reductase; reductase-dehydrogenase 914944..915759 Lactobacillus acidophilus NCFM 3251911 YP_193825.1 CDS LBA0941 NC_006814.3 915811 916623 D cof family protein 915811..916623 Lactobacillus acidophilus NCFM 3251914 YP_193826.1 CDS LBA0942 NC_006814.3 916690 917655 D glyoxylate reductase 916690..917655 Lactobacillus acidophilus NCFM 3251916 YP_193827.1 CDS LBA0943 NC_006814.3 917690 918886 R COG0531 Amino acid transporters; cationic amino acid transporter complement(917690..918886) Lactobacillus acidophilus NCFM 3251918 YP_193828.1 CDS LBA0945 NC_006814.3 919173 919787 R COG0586 Uncharacterized membrane-associated protein; alkaline phosphatase complement(919173..919787) Lactobacillus acidophilus NCFM 3251920 YP_193829.1 CDS uvrC NC_006814.3 919923 921725 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 919923..921725 Lactobacillus acidophilus NCFM 3251923 YP_193830.1 CDS obgE NC_006814.3 921804 923105 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 921804..923105 Lactobacillus acidophilus NCFM 3251926 YP_193831.1 CDS LBA0948 NC_006814.3 923251 925044 D COG1835 Predicted acyltransferases; inner membrane trans-acylase 923251..925044 Lactobacillus acidophilus NCFM 3251928 YP_193832.1 CDS LBA0949 NC_006814.3 925065 926003 D metallo-beta-lactamase superfamily 925065..926003 Lactobacillus acidophilus NCFM 3251931 YP_193833.1 CDS LBA0950 NC_006814.3 926000 926794 D oxidoreductase 926000..926794 Lactobacillus acidophilus NCFM 3251933 YP_193834.1 CDS LBA0951 NC_006814.3 926800 927045 D hypothetical protein 926800..927045 Lactobacillus acidophilus NCFM 3251934 YP_193835.1 CDS rpmF NC_006814.3 927150 927338 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 927150..927338 Lactobacillus acidophilus NCFM 3251937 YP_193836.1 CDS yfkN NC_006814.3 927396 928952 D 2',3'-cyclic-nucleotide 2'-phosphodiesterase 927396..928952 Lactobacillus acidophilus NCFM 3251940 YP_193837.1 CDS LBA0954 NC_006814.3 929014 929232 R integral membrane protein; hypothetical protein complement(929014..929232) Lactobacillus acidophilus NCFM 3251941 YP_193838.1 CDS LBA0955 NC_006814.3 929349 932456 D DNA polymerase III subunit alpha 929349..932456 Lactobacillus acidophilus NCFM 3251945 YP_193839.1 CDS LBA0956 NC_006814.3 932623 933585 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 932623..933585 Lactobacillus acidophilus NCFM 3251947 YP_193840.1 CDS kpyK NC_006814.3 933614 935383 D COG3848 Phosphohistidine swiveling domain; pyruvate kinase 933614..935383 Lactobacillus acidophilus NCFM 3251950 YP_193841.1 CDS LBA0958 NC_006814.3 935507 936397 D hypothetical protein 935507..936397 Lactobacillus acidophilus NCFM 3251951 YP_193842.1 CDS xerD NC_006814.3 936387 937292 D XerD; COG4974 Site-specific recombinase XerD; integrase-recombinase 936387..937292 Lactobacillus acidophilus NCFM 3251953 YP_193843.1 CDS ribT NC_006814.3 937302 937664 D RibT; hypothetical protein; reductase 937302..937664 Lactobacillus acidophilus NCFM 3251955 YP_193844.1 CDS LBA0961 NC_006814.3 937651 938391 D COG1354 Uncharacterized conserved protein; hypothetical protein 937651..938391 Lactobacillus acidophilus NCFM 3251957 YP_193845.1 CDS LBA0962 NC_006814.3 938381 938974 D hypothetical protein 938381..938974 Lactobacillus acidophilus NCFM 3251959 YP_193846.1 CDS rluB NC_006814.3 938974 939690 D ribosomal large subunit pseudouridine synthase B 938974..939690 Lactobacillus acidophilus NCFM 3251961 YP_193847.1 CDS LBA0965 NC_006814.3 939914 940603 D COG3601 Predicted membrane protein; hypothetical protein 939914..940603 Lactobacillus acidophilus NCFM 3251964 YP_193848.1 CDS LBA0966 NC_006814.3 940704 941165 D N-acetylmuramidase 940704..941165 Lactobacillus acidophilus NCFM 3251966 YP_193849.1 CDS LBA0967 NC_006814.3 941216 941878 D COG0283 Cytidylate kinase; cytidin monophosphate kinase 941216..941878 Lactobacillus acidophilus NCFM 3251968 YP_193850.1 CDS rpsA NC_006814.3 941963 943174 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 941963..943174 Lactobacillus acidophilus NCFM 3251971 YP_193851.1 CDS engA NC_006814.3 943260 944567 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 943260..944567 Lactobacillus acidophilus NCFM 3251973 YP_193852.1 CDS LBA0970 NC_006814.3 944731 945006 D DNA-binding protein II HB 944731..945006 Lactobacillus acidophilus NCFM 3251975 YP_193853.1 CDS LBA0971 NC_006814.3 945094 946341 D GlcNAc; hypothetical protein; O-linked transferase 945094..946341 Lactobacillus acidophilus NCFM 3251978 YP_193854.1 CDS LBA0972 NC_006814.3 946374 947261 R COG1284 Uncharacterized conserved protein; hypothetical protein complement(946374..947261) Lactobacillus acidophilus NCFM 3251979 YP_193855.1 CDS LBA0973 NC_006814.3 947345 948544 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 947345..948544 Lactobacillus acidophilus NCFM 3251982 YP_193856.1 CDS LBA0974 NC_006814.3 948584 949249 R channel-forming protein complement(948584..949249) Lactobacillus acidophilus NCFM 3251984 YP_193857.1 CDS LBA0975 NC_006814.3 949369 950220 D DegV; family protein 949369..950220 Lactobacillus acidophilus NCFM 3251987 YP_193858.1 CDS LBA0976 NC_006814.3 950223 950453 D COG4479 Uncharacterized protein conserved in bacteria; hypothetical protein 950223..950453 Lactobacillus acidophilus NCFM 3251989 YP_193859.1 CDS LBA0977 NC_006814.3 950498 952099 D Na(+)-H(+) antiporter; Na+-H+ antiporter 950498..952099 Lactobacillus acidophilus NCFM 3251991 YP_193860.1 CDS LBA0978 NC_006814.3 952133 952987 D COG1161 Predicted GTPases; GTP binding protein 952133..952987 Lactobacillus acidophilus NCFM 3251993 YP_193861.1 CDS rnhB NC_006814.3 952977 953729 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 952977..953729 Lactobacillus acidophilus NCFM 3251995 YP_193862.1 CDS LBA0980 NC_006814.3 953791 954648 D SMF family; DNA processing protein subunit A 953791..954648 Lactobacillus acidophilus NCFM 3251997 YP_193863.1 CDS LBA0981 NC_006814.3 954709 956826 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 954709..956826 Lactobacillus acidophilus NCFM 3252000 YP_193864.1 CDS gidA NC_006814.3 956853 958169 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 956853..958169 Lactobacillus acidophilus NCFM 3252002 YP_193865.1 CDS xerC NC_006814.3 958169 959077 D XerC; COG4974 Site-specific recombinase XerD; integrase-recombinase 958169..959077 Lactobacillus acidophilus NCFM 3252004 YP_193866.1 CDS hslV NC_006814.3 959087 959611 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 959087..959611 Lactobacillus acidophilus NCFM 3252005 YP_193867.1 CDS hslU NC_006814.3 959623 961023 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 959623..961023 Lactobacillus acidophilus NCFM 3252008 YP_193868.1 CDS LBA0986 NC_006814.3 961181 962080 D galactose mutarotase related enzyme 961181..962080 Lactobacillus acidophilus NCFM 3252009 YP_193869.1 CDS LBA0987 NC_006814.3 962250 962654 R hypothetical protein complement(962250..962654) Lactobacillus acidophilus NCFM 3252010 YP_193870.1 CDS lacE NC_006814.3 962839 964125 D PTS system lactose-specific transporter subunit IIBC 962839..964125 Lactobacillus acidophilus NCFM 3252183 YP_193871.1 CDS LBA0990 NC_006814.3 964122 964976 D hydrolase 964122..964976 Lactobacillus acidophilus NCFM 3252071 YP_193872.1 CDS xerD NC_006814.3 965003 965815 R XerD; hypothetical protein; integrase-recombinase complement(965003..965815) Lactobacillus acidophilus NCFM 3252074 YP_193873.1 CDS crcB NC_006814.3 966034 966423 D CrcB; hypothetical protein 966034..966423 Lactobacillus acidophilus NCFM 3252061 YP_193874.1 CDS crcB NC_006814.3 966425 966799 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 966425..966799 Lactobacillus acidophilus NCFM 3252079 YP_193875.1 CDS pepD NC_006814.3 966844 968247 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(966844..968247) Lactobacillus acidophilus NCFM 3252090 YP_193876.1 CDS LBA0995 NC_006814.3 968367 969839 R COG0531 Amino acid transporters; amino acid permease complement(968367..969839) Lactobacillus acidophilus NCFM 3252082 YP_193877.1 CDS LBA0996 NC_006814.3 970077 972170 D COG1982 Arginine-lysine-ornithine decarboxylases; ornithine decarboxylase subunit A 970077..972170 Lactobacillus acidophilus NCFM 3252092 YP_193878.1 CDS LBA0997 NC_006814.3 972197 973459 D aluminum resistance protein 972197..973459 Lactobacillus acidophilus NCFM 3252131 YP_193879.1 CDS LBA0998 NC_006814.3 973896 974567 R NAD+ binding protein for K+transport complement(973896..974567) Lactobacillus acidophilus NCFM 3252174 YP_193880.1 CDS LBA0999 NC_006814.3 974560 975900 R Na+-transporting ATP synthase complement(974560..975900) Lactobacillus acidophilus NCFM 3252179 YP_193881.1 CDS recQ NC_006814.3 976061 977833 D RecQ; ATP-dependent DNA helicase 976061..977833 Lactobacillus acidophilus NCFM 3252199 YP_193882.1 CDS LBA1001 NC_006814.3 977918 978370 D conserved hypothetical protein; trp repressor binding protein 977918..978370 Lactobacillus acidophilus NCFM 3252217 YP_193883.1 CDS LBA1002 NC_006814.3 978443 980977 D excinuclease subunit A 978443..980977 Lactobacillus acidophilus NCFM 3252242 YP_193884.1 CDS mmuM NC_006814.3 981037 981969 D converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase 981037..981969 Lactobacillus acidophilus NCFM 3252151 YP_193885.1 CDS LBA1004 NC_006814.3 982276 982908 R COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein complement(982276..982908) Lactobacillus acidophilus NCFM 3252209 YP_193886.1 CDS LBA1005 NC_006814.3 983001 983390 D protein acetyltransferase; acetyltransferase 983001..983390 Lactobacillus acidophilus NCFM 3252228 YP_193887.1 CDS LBA1006 NC_006814.3 983581 984675 D penicillin-binding protein 983581..984675 Lactobacillus acidophilus NCFM 3252237 YP_193888.1 CDS LBA1007 NC_006814.3 984730 985578 D COG2240 Pyridoxal-pyridoxine-pyridoxamine kinase; pyridoxal kinase 984730..985578 Lactobacillus acidophilus NCFM 3252247 YP_193889.1 CDS LBA1008 NC_006814.3 985592 986149 D hypothetical protein 985592..986149 Lactobacillus acidophilus NCFM 3252261 YP_193890.1 CDS LBA1010 NC_006814.3 986253 987458 D hypothetical protein 986253..987458 Lactobacillus acidophilus NCFM 3252254 YP_193891.1 CDS LBA1011 NC_006814.3 987582 988988 D hypothetical protein 987582..988988 Lactobacillus acidophilus NCFM 3252308 YP_193892.1 CDS treB NC_006814.3 989171 991102 R COG1263 Phosphotransferase system IIC components, glucose-maltose-N-acetylglucosamine-specific; PTS system trehalose specific transporter subunit AIIBC complement(989171..991102) Lactobacillus acidophilus NCFM 3252320 YP_193893.1 CDS treR NC_006814.3 991285 992010 D COG2188 transcriptional regulators; trehalose operon transcriptional repressor 991285..992010 Lactobacillus acidophilus NCFM 3252349 YP_193894.1 CDS treC NC_006814.3 992021 993685 D trehalose 6-P hydrolase 992021..993685 Lactobacillus acidophilus NCFM 3252334 YP_193895.1 CDS LBA1015 NC_006814.3 993847 994587 R type 1 capsular polysaccharide biosynthesis protein complement(993847..994587) Lactobacillus acidophilus NCFM 3252336 YP_193896.1 CDS LBA1016 NC_006814.3 995031 995588 D potential frameshift to 1019; mucus binding protein 995031..995588 Lactobacillus acidophilus NCFM 3252341 YP_193897.1 CDS LBA1017 NC_006814.3 995548 996432 D potential frameshift to 1019; mucus binding protein 995548..996432 Lactobacillus acidophilus NCFM 3252348 YP_193898.1 CDS LBA1018 NC_006814.3 997153 998193 D potential frameshift to 1019; hypothetical protein; mucus binding protein 997153..998193 Lactobacillus acidophilus NCFM 3252351 YP_193899.1 CDS LBA1019 NC_006814.3 998965 1006917 D potential frameshift to 1016; mucus binding protein 998965..1006917 Lactobacillus acidophilus NCFM 3252337 YP_193900.1 CDS LBA1020 NC_006814.3 1007250 1014182 D mucus binding protein 1007250..1014182 Lactobacillus acidophilus NCFM 3252355 YP_193901.1 CDS LBA1021 NC_006814.3 1014163 1014354 R transcriptional regulator of multidrug-efflux transporter genes; transcriptional regulator complement(1014163..1014354) Lactobacillus acidophilus NCFM 3252360 YP_193902.1 CDS LBA1022 NC_006814.3 1014416 1015279 D arginase 1014416..1015279 Lactobacillus acidophilus NCFM 3252387 YP_193903.1 CDS LBA1023 NC_006814.3 1015365 1016003 D COG0702 Predicted nucleoside-diphosphate-sugar epimerases; oxidoreductase 1015365..1016003 Lactobacillus acidophilus NCFM 3252389 YP_193904.1 CDS lysR NC_006814.3 1016062 1016928 R transcriptional regulator complement(1016062..1016928) Lactobacillus acidophilus NCFM 3252369 YP_193905.1 CDS LBA1025 NC_006814.3 1017041 1017901 D aldo/keto reductase 1017041..1017901 Lactobacillus acidophilus NCFM 3252404 YP_193906.1 CDS LBA1026 NC_006814.3 1017922 1018791 D aldo/keto reductase 1017922..1018791 Lactobacillus acidophilus NCFM 3252422 YP_193907.1 CDS LBA1027 NC_006814.3 1019042 1019899 D oxidoreductase 1019042..1019899 Lactobacillus acidophilus NCFM 3252431 YP_193908.1 CDS LBA1029 NC_006814.3 1020160 1021317 D surface layer protein 1020160..1021317 Lactobacillus acidophilus NCFM 3252402 YP_193909.1 CDS LBA1030 NC_006814.3 1021535 1022068 D acetyl transferase; streptothricine-acetyl-transferase 1021535..1022068 Lactobacillus acidophilus NCFM 3252441 YP_193910.1 CDS LBA1031 NC_006814.3 1022290 1022883 D serine-specific protein kinase 1022290..1022883 Lactobacillus acidophilus NCFM 3252469 YP_193911.1 CDS LBA1032 NC_006814.3 1022922 1023332 D hypothetical protein 1022922..1023332 Lactobacillus acidophilus NCFM 3252475 YP_193912.1 CDS LBA1033 NC_006814.3 1023482 1024054 D conserved domain protein; hypothetical protein 1023482..1024054 Lactobacillus acidophilus NCFM 3252472 YP_193913.1 CDS LBA1034 NC_006814.3 1024067 1024528 D COG1959 Predicted transcriptional regulator; hypothetical protein 1024067..1024528 Lactobacillus acidophilus NCFM 3252481 YP_193914.1 CDS LBA1035 NC_006814.3 1024525 1024728 R transcriptional regulator; hypothetical protein complement(1024525..1024728) Lactobacillus acidophilus NCFM 3252486 YP_193915.1 CDS LBA1036 NC_006814.3 1025436 1026806 D branched-chain amino acid transporter 1025436..1026806 Lactobacillus acidophilus NCFM 3252490 YP_193916.1 CDS LBA1037 NC_006814.3 1026949 1027815 D aldo-keto reductase; aldose reductase 1026949..1027815 Lactobacillus acidophilus NCFM 3252491 YP_193917.1 CDS LBA1038 NC_006814.3 1028114 1029013 R cell surface protein precursor; hypothetical protein complement(1028114..1029013) Lactobacillus acidophilus NCFM 3252497 YP_193918.1 CDS lysR NC_006814.3 1029495 1029788 R transcriptional regulator complement(1029495..1029788) Lactobacillus acidophilus NCFM 3252513 YP_193919.1 CDS LBA1040 NC_006814.3 1029787 1029930 D hydrolase 1029787..1029930 Lactobacillus acidophilus NCFM 3252359 YP_193920.1 CDS LBA1042 NC_006814.3 1030269 1030928 D glutamine ABC transporter membrane spanning permease 1030269..1030928 Lactobacillus acidophilus NCFM 3252531 YP_193921.1 CDS LBA1044 NC_006814.3 1030909 1031583 D ABC transporter 1030909..1031583 Lactobacillus acidophilus NCFM 3252534 YP_193922.1 CDS LBA1045 NC_006814.3 1031592 1032332 D glutamine ABC transporter ATP-binding protein 1031592..1032332 Lactobacillus acidophilus NCFM 3252529 YP_193923.1 CDS LBA1046 NC_006814.3 1032346 1033206 D ATP-binding cassette transport system similar to substrate binding protein and to components of ABC transporter ORF J; glutamine ABC transporter substrate-binding protein 1032346..1033206 Lactobacillus acidophilus NCFM 3252538 YP_193924.1 CDS LBA1047 NC_006814.3 1033490 1033984 R COG2077 Peroxiredoxin; thiol peroxidase Tpx complement(1033490..1033984) Lactobacillus acidophilus NCFM 3252392 YP_193925.1 CDS LBA1048 NC_006814.3 1034166 1034768 D phosphoglycerate mutase 1034166..1034768 Lactobacillus acidophilus NCFM 3252528 YP_193926.1 CDS LBA1049 NC_006814.3 1034781 1035695 D 4-oxalomesaconate hydratase 1034781..1035695 Lactobacillus acidophilus NCFM 3252565 YP_193927.1 CDS LBA1050 NC_006814.3 1036228 1036830 R hypothetical protein complement(1036228..1036830) Lactobacillus acidophilus NCFM 3252569 YP_193928.1 CDS LBA1051 NC_006814.3 1036850 1037464 R unknown hydrophobic protein; hydrophobic protein complement(1036850..1037464) Lactobacillus acidophilus NCFM 3252598 YP_193929.1 CDS LBA1052 NC_006814.3 1037523 1038191 D glutamine amidotransferase 1037523..1038191 Lactobacillus acidophilus NCFM 3252566 YP_193930.1 CDS LBA1053 NC_006814.3 1038259 1039452 R antibiotic resistance protein; membrane protein complement(1038259..1039452) Lactobacillus acidophilus NCFM 3252634 YP_193931.1 CDS lysR NC_006814.3 1039552 1040388 R transcriptional regulator complement(1039552..1040388) Lactobacillus acidophilus NCFM 3252625 YP_193932.1 CDS mutT NC_006814.3 1040439 1041062 D MutT; mutator protein 1040439..1041062 Lactobacillus acidophilus NCFM 3252502 YP_193933.1 CDS LBA1056 NC_006814.3 1041197 1041652 R cation efflux system (zinc-cadmium); hypothetical protein complement(1041197..1041652) Lactobacillus acidophilus NCFM 3252666 YP_193934.1 CDS LBA1057 NC_006814.3 1041828 1042295 D HIT-like protein 1041828..1042295 Lactobacillus acidophilus NCFM 3252663 YP_193935.1 CDS LBA1058 NC_006814.3 1042316 1042675 D hypothetical protein 1042316..1042675 Lactobacillus acidophilus NCFM 3252681 YP_193936.1 CDS LBA1059 NC_006814.3 1042681 1043196 D ribosomal-protein-serine N-acetyltransferase 1042681..1043196 Lactobacillus acidophilus NCFM 3252684 YP_193938.1 CDS LBA1061 NC_006814.3 1044025 1044621 D phosphate transporter related protein 1044025..1044621 Lactobacillus acidophilus NCFM 3252589 YP_193939.1 CDS LBA1062 NC_006814.3 1044704 1045225 D multidrug efflux permease 1044704..1045225 Lactobacillus acidophilus NCFM 3252723 YP_193940.1 CDS LBA1063 NC_006814.3 1045370 1045573 D hypothetical protein 1045370..1045573 Lactobacillus acidophilus NCFM 3252611 YP_193941.1 CDS LBA1064 NC_006814.3 1045679 1046440 D COG2820 Uridine phosphorylase; phosphorylase 1045679..1046440 Lactobacillus acidophilus NCFM 3252604 YP_193942.1 CDS LBA1065 NC_006814.3 1046468 1047064 D Phosphoglycerate mutase; phosphoglycerate mutase 1046468..1047064 Lactobacillus acidophilus NCFM 3252711 YP_193943.1 CDS LBA1066 NC_006814.3 1047092 1047862 D COG2820 Uridine phosphorylase; phosphorylase 1047092..1047862 Lactobacillus acidophilus NCFM 3252745 YP_193944.1 CDS LBA1067 NC_006814.3 1047879 1048640 D COG2820 Uridine phosphorylase; phosphorylase 1047879..1048640 Lactobacillus acidophilus NCFM 3252746 YP_193945.1 CDS LBA1068 NC_006814.3 1048680 1049282 D HAD superfamily hydrolase 1048680..1049282 Lactobacillus acidophilus NCFM 3252789 YP_193946.1 CDS LBA1069 NC_006814.3 1049388 1049495 D hypothetical protein 1049388..1049495 Lactobacillus acidophilus NCFM 3252799 YP_193947.1 CDS LBA1070 NC_006814.3 1049615 1049848 R hypothetical protein complement(1049615..1049848) Lactobacillus acidophilus NCFM 3252841 YP_008992038.1 CDS LBA1070b NC_006814.3 1050230 1050619 D malate transporter; hypothetical protein 1050230..1050619 Lactobacillus acidophilus NCFM 18111640 YP_193948.1 CDS LBA1071 NC_006814.3 1051871 1052524 D hypothetical protein 1051871..1052524 Lactobacillus acidophilus NCFM 3252837 YP_193949.1 CDS LBA1072 NC_006814.3 1052545 1052790 D hypothetical protein 1052545..1052790 Lactobacillus acidophilus NCFM 3252889 YP_193950.1 CDS lysR NC_006814.3 1053480 1054394 R malolactic regulator complement(1053480..1054394) Lactobacillus acidophilus NCFM 3252883 YP_193951.1 CDS LBA1075 NC_006814.3 1054523 1056148 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1054523..1056148 Lactobacillus acidophilus NCFM 3252907 YP_193952.1 CDS ltrA NC_006814.3 1056215 1056802 R COG4292 Predicted membrane protein; hypothetical protein complement(1056215..1056802) Lactobacillus acidophilus NCFM 3252910 YP_193953.1 CDS LBA1077 NC_006814.3 1056906 1058195 D recombination factor protein RarA 1056906..1058195 Lactobacillus acidophilus NCFM 3252923 YP_193954.1 CDS bshB NC_006814.3 1058279 1059256 D bile salt hydrolase 1058279..1059256 Lactobacillus acidophilus NCFM 3252955 YP_193955.1 CDS LBA1079 NC_006814.3 1059602 1060210 D cell surface protein 1059602..1060210 Lactobacillus acidophilus NCFM 3252972 YP_193956.1 CDS metK NC_006814.3 1060637 1061755 D MetE; methionine synthase 1060637..1061755 Lactobacillus acidophilus NCFM 3252988 YP_193957.1 CDS luxS NC_006814.3 1061945 1062418 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1061945..1062418 Lactobacillus acidophilus NCFM 3253048 YP_193958.1 CDS LBA1082 NC_006814.3 1062581 1063261 D hypothetical protein 1062581..1063261 Lactobacillus acidophilus NCFM 3253073 YP_193959.1 CDS LBA1083 NC_006814.3 1063261 1064106 D membrane nuclease 1063261..1064106 Lactobacillus acidophilus NCFM 3252826 YP_193960.1 CDS LBA1084 NC_006814.3 1064205 1064849 D COG2910 NADH-flavin reductase; NADH-flavin reductase 1064205..1064849 Lactobacillus acidophilus NCFM 3252823 YP_193961.1 CDS LBA1086 NC_006814.3 1064914 1066239 R amino acid transport protein; amino acid permease complement(1064914..1066239) Lactobacillus acidophilus NCFM 3253074 YP_193962.1 CDS LBA1087 NC_006814.3 1066779 1067366 D potential frameshift to 1088; cysteine synthase 1066779..1067366 Lactobacillus acidophilus NCFM 3253075 YP_193963.1 CDS LBA1088 NC_006814.3 1067600 1067710 D potential frameshift to 1087; COG0031 Cysteine synthase; cysteine synthase 1067600..1067710 Lactobacillus acidophilus NCFM 3253084 YP_193964.1 CDS LBA1089 NC_006814.3 1067892 1068149 D potential frameshift to 1090; cystathionine beta-lyase 1067892..1068149 Lactobacillus acidophilus NCFM 3253089 YP_193965.1 CDS metC NC_006814.3 1068231 1069037 D potential frameshift to 1089; MetC; cystathionine beta-lyase 1068231..1069037 Lactobacillus acidophilus NCFM 3253077 YP_193966.1 CDS luxS NC_006814.3 1069236 1069463 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1069236..1069463 Lactobacillus acidophilus NCFM 3253108 YP_193967.1 CDS LBA1092 NC_006814.3 1069606 1072344 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(1069606..1072344) Lactobacillus acidophilus NCFM 3253079 YP_193968.1 CDS LBA1093 NC_006814.3 1072591 1076307 D conserved hypothetical protein; helicase 1072591..1076307 Lactobacillus acidophilus NCFM 3252874 YP_193969.1 CDS LBA1094 NC_006814.3 1076307 1078367 D ATPase 1076307..1078367 Lactobacillus acidophilus NCFM 3253017 YP_193970.1 CDS LBA1095 NC_006814.3 1078370 1078528 D phosphotransferase 1078370..1078528 Lactobacillus acidophilus NCFM 3252126 YP_193971.1 CDS LBA1096 NC_006814.3 1078674 1079603 R COG2378 Predicted transcriptional regulator; repressor protein complement(1078674..1079603) Lactobacillus acidophilus NCFM 3252927 YP_193972.1 CDS LBA1097 NC_006814.3 1079691 1080149 D hypothetical protein 1079691..1080149 Lactobacillus acidophilus NCFM 3252134 YP_193973.1 CDS LBA1098 NC_006814.3 1080285 1081073 D Converts glucose to D-glucono-1,5 lactone; glucose-1-dehydrogenase 1080285..1081073 Lactobacillus acidophilus NCFM 3252319 YP_193974.1 CDS LBA1099 NC_006814.3 1081344 1081655 R phosphinothricin N-acetyltransferase complement(1081344..1081655) Lactobacillus acidophilus NCFM 3252928 YP_193975.1 CDS LBA1100 NC_006814.3 1081847 1082470 D potential frameshift to 1101; aldo/keto reductase 1081847..1082470 Lactobacillus acidophilus NCFM 3252311 YP_193976.1 CDS LBA1101 NC_006814.3 1082486 1082845 D potential frameshift to 1100; oxidoreductase 1082486..1082845 Lactobacillus acidophilus NCFM 3252476 YP_193977.1 CDS LBA1102 NC_006814.3 1083164 1084006 D transmembrane protein 1083164..1084006 Lactobacillus acidophilus NCFM 3252478 YP_193978.1 CDS LBA1103 NC_006814.3 1084245 1084520 D potential frameshift to 1105; Flavodoxin; flavodoxin 1084245..1084520 Lactobacillus acidophilus NCFM 3252507 YP_193979.1 CDS LBA1104 NC_006814.3 1084547 1084645 D hypothetical protein 1084547..1084645 Lactobacillus acidophilus NCFM 3252729 YP_193980.1 CDS LBA1105 NC_006814.3 1084690 1085301 D potential frameshift to 1103; COG0716 Flavodoxins; flavodoxin 1084690..1085301 Lactobacillus acidophilus NCFM 3252782 YP_193981.1 CDS LBA1106 NC_006814.3 1085327 1085890 D COG3693 Beta-1,4-xylanase; hypothetical protein 1085327..1085890 Lactobacillus acidophilus NCFM 3252200 YP_193982.1 CDS LBA1107 NC_006814.3 1086025 1087356 D COG1249 Pyruvate-2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component; glutathione reductase 1086025..1087356 Lactobacillus acidophilus NCFM 3252805 YP_193983.1 CDS LBA1108 NC_006814.3 1087523 1087702 D hypothetical protein 1087523..1087702 Lactobacillus acidophilus NCFM 3252400 YP_193984.1 CDS LBA1109 NC_006814.3 1087895 1088659 D flavodoxin; hypothetical protein 1087895..1088659 Lactobacillus acidophilus NCFM 3252863 YP_193985.1 CDS LBA1110 NC_006814.3 1088788 1089342 D hypothetical protein 1088788..1089342 Lactobacillus acidophilus NCFM 3252495 YP_193986.1 CDS LBA1111 NC_006814.3 1089457 1089804 D potential frameshift to 1112; COG0716 Flavodoxins; flavodoxin 1089457..1089804 Lactobacillus acidophilus NCFM 3253028 YP_193987.1 CDS LBA1112 NC_006814.3 1089741 1089959 D potential frameshift to 1111; flavodoxin 1089741..1089959 Lactobacillus acidophilus NCFM 3252931 YP_193988.1 CDS LBA1113 NC_006814.3 1089959 1090774 D potential frameshift to 1114; ferric reductase 1089959..1090774 Lactobacillus acidophilus NCFM 3252307 YP_193989.1 CDS LBA1114 NC_006814.3 1090774 1091223 D potential frameshift to 1113; alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 1090774..1091223 Lactobacillus acidophilus NCFM 3252844 YP_193990.1 CDS LBA1115 NC_006814.3 1091686 1093056 D COG0531 Amino acid transporters; amino acid permease 1091686..1093056 Lactobacillus acidophilus NCFM 3252381 YP_193991.1 CDS LBA1116 NC_006814.3 1093461 1093736 R potential frameshift to 1117; pyrroline-5-carboxylate reductase complement(1093461..1093736) Lactobacillus acidophilus NCFM 3252938 YP_193992.1 CDS LBA1117 NC_006814.3 1093723 1094010 R potential frameshift to 1116; pyrroline reductase complement(1093723..1094010) Lactobacillus acidophilus NCFM 3252695 YP_193993.1 CDS LBA1118 NC_006814.3 1094257 1094481 R hypothetical protein complement(1094257..1094481) Lactobacillus acidophilus NCFM 3252560 YP_193994.1 CDS LBA1119 NC_006814.3 1094914 1095900 D COG2855 Predicted membrane protein; hypothetical protein 1094914..1095900 Lactobacillus acidophilus NCFM 3252206 YP_193995.1 CDS LBA1120 NC_006814.3 1096118 1096687 R UDP-glycosyltransferase 37b1 CG9481-PA; hypothetical protein complement(1096118..1096687) Lactobacillus acidophilus NCFM 3252197 YP_193996.1 CDS LBA1121 NC_006814.3 1096921 1097556 R COG0344 Predicted membrane protein; hypothetical protein complement(1096921..1097556) Lactobacillus acidophilus NCFM 3252196 YP_193997.1 CDS LBA1122 NC_006814.3 1097653 1099599 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1097653..1099599 Lactobacillus acidophilus NCFM 3252374 YP_193998.1 CDS LBA1123 NC_006814.3 1099628 1102078 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1099628..1102078 Lactobacillus acidophilus NCFM 3252652 YP_193999.1 CDS lysR NC_006814.3 1102215 1103186 D transcriptional regulator 1102215..1103186 Lactobacillus acidophilus NCFM 3252736 YP_194000.1 CDS LBA1125 NC_006814.3 1103207 1104142 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 1103207..1104142 Lactobacillus acidophilus NCFM 3252945 YP_194001.1 CDS LBA1126 NC_006814.3 1104280 1104879 D peptidyl-prolyl cis-trans isomerase 1104280..1104879 Lactobacillus acidophilus NCFM 3252714 YP_194003.1 CDS LBA1128 NC_006814.3 1105576 1106295 D COG3619 Predicted membrane protein; hypothetical protein 1105576..1106295 Lactobacillus acidophilus NCFM 3252956 YP_194004.1 CDS LBA1129 NC_006814.3 1107612 1107986 R cell division protein complement(1107612..1107986) Lactobacillus acidophilus NCFM 3252372 YP_194005.1 CDS LBA1131 NC_006814.3 1108657 1110240 R ABC transporter ATP-binding protein/permease complement(1108657..1110240) Lactobacillus acidophilus NCFM 3252019 YP_194006.1 CDS LBA1132 NC_006814.3 1110237 1111826 R lactococcin A ABC transporter ATP binding protein complement(1110237..1111826) Lactobacillus acidophilus NCFM 3252442 YP_194007.1 CDS LBA1135 NC_006814.3 1112206 1113423 D Macrolide-efflux protein; macrolide efflux protein 1112206..1113423 Lactobacillus acidophilus NCFM 3252583 YP_194008.1 CDS LBA1136 NC_006814.3 1113652 1114158 R transcriptional regulator complement(1113652..1114158) Lactobacillus acidophilus NCFM 3252250 YP_194009.1 CDS acpD NC_006814.3 1114189 1114527 R ACP phosphodieterase complement(1114189..1114527) Lactobacillus acidophilus NCFM 3252418 YP_194010.1 CDS LBA1138 NC_006814.3 1114553 1114645 R acyl carrier protein phosphodiesterase; hypothetical protein complement(1114553..1114645) Lactobacillus acidophilus NCFM 3252403 YP_194011.1 CDS LBA1140 NC_006814.3 1115108 1116256 D COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); lysin 1115108..1116256 Lactobacillus acidophilus NCFM 3252986 YP_194012.1 CDS LBA1142 NC_006814.3 1116352 1116960 D membrane protein; diaphanous-like protein 1116352..1116960 Lactobacillus acidophilus NCFM 3252673 YP_194013.1 CDS flaR NC_006814.3 1116997 1117488 R FlaR; adenylate kinase complement(1116997..1117488) Lactobacillus acidophilus NCFM 3252594 YP_194014.1 CDS LBA1144 NC_006814.3 1117490 1117939 R harderin; hypothetical protein complement(1117490..1117939) Lactobacillus acidophilus NCFM 3252690 YP_194015.1 CDS xerS NC_006814.3 1118473 1119501 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1118473..1119501 Lactobacillus acidophilus NCFM 3252440 YP_194016.1 CDS LBA1146 NC_006814.3 1119559 1120440 R DegV; family protein complement(1119559..1120440) Lactobacillus acidophilus NCFM 3252129 YP_194017.1 CDS LBA1147 NC_006814.3 1120518 1120928 R l-fucose operon complement(1120518..1120928) Lactobacillus acidophilus NCFM 3252353 YP_194018.1 CDS LBA1148 NC_006814.3 1121171 1122862 D fibronectin-binding protein 1121171..1122862 Lactobacillus acidophilus NCFM 3252354 YP_194019.1 CDS carB NC_006814.3 1122934 1126119 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1122934..1126119) Lactobacillus acidophilus NCFM 3252942 YP_194020.1 CDS LBA1150 NC_006814.3 1126123 1127178 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1126123..1127178) Lactobacillus acidophilus NCFM 3252378 YP_194021.1 CDS LBA1151 NC_006814.3 1127183 1128091 R pseudouridine synthase complement(1127183..1128091) Lactobacillus acidophilus NCFM 3252496 YP_194022.1 CDS lspA NC_006814.3 1128084 1128587 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1128084..1128587) Lactobacillus acidophilus NCFM 3252195 YP_194023.1 CDS purU NC_006814.3 1128559 1130235 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1128559..1130235) Lactobacillus acidophilus NCFM 3252922 YP_194024.1 CDS cpdA NC_006814.3 1130733 1131965 R CpdA; COG1409 Predicted phosphohydrolases; 3',5'-cyclic-nucleotide phosphodiesterase complement(1130733..1131965) Lactobacillus acidophilus NCFM 3253088 YP_194025.1 CDS LBA1155 NC_006814.3 1131968 1133092 R hypothetical protein complement(1131968..1133092) Lactobacillus acidophilus NCFM 3253083 YP_194026.1 CDS LBA1156 NC_006814.3 1133557 1133970 R hypothetical protein complement(1133557..1133970) Lactobacillus acidophilus NCFM 3253076 YP_194027.1 CDS LBA1157 NC_006814.3 1134066 1134629 R hypothetical protein complement(1134066..1134629) Lactobacillus acidophilus NCFM 3253094 YP_194028.1 CDS recU NC_006814.3 1134698 1135333 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1134698..1135333 Lactobacillus acidophilus NCFM 3253087 YP_194029.1 CDS LBA1159 NC_006814.3 1135333 1137663 D Pbp1; penicillin binding protein 1A 1135333..1137663 Lactobacillus acidophilus NCFM 3253082 YP_194030.1 CDS LBA1160 NC_006814.3 1137842 1138471 R End3; COG0177 Predicted EndoIII-related endonuclease; endonuclease III complement(1137842..1138471) Lactobacillus acidophilus NCFM 3253093 YP_194031.1 CDS dnaD NC_006814.3 1138473 1139117 R DnaD; initiation of chromosome replication protein complement(1138473..1139117) Lactobacillus acidophilus NCFM 3253061 YP_194032.1 CDS asnC NC_006814.3 1139255 1140499 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1139255..1140499) Lactobacillus acidophilus NCFM 3253101 YP_194033.1 CDS LBA1163 NC_006814.3 1140554 1141051 R hypothetical protein complement(1140554..1141051) Lactobacillus acidophilus NCFM 3253103 YP_194034.1 CDS dinG NC_006814.3 1141054 1143837 R DinG; ATP-dependent DNA helicase complement(1141054..1143837) Lactobacillus acidophilus NCFM 3253070 YP_194035.1 CDS addA NC_006814.3 1143861 1147484 R AddA; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); ATP-dependent exonuclease subunit A complement(1143861..1147484) Lactobacillus acidophilus NCFM 3253086 YP_194036.1 CDS addB NC_006814.3 1147487 1150969 R AddB; ATP-dependent exonuclease subunit B complement(1147487..1150969) Lactobacillus acidophilus NCFM 3253068 YP_194037.1 CDS mvaK NC_006814.3 1151051 1151959 D mevalonate kinase 1151051..1151959 Lactobacillus acidophilus NCFM 3253078 YP_194038.1 CDS mvaD NC_006814.3 1151965 1152927 D mevalonate diphosphate decarboxylase 1151965..1152927 Lactobacillus acidophilus NCFM 3253057 YP_194039.1 CDS LBA1169 NC_006814.3 1152971 1154053 D phosphomevalonate kinase 1152971..1154053 Lactobacillus acidophilus NCFM 3253097 YP_194040.1 CDS LBA1171 NC_006814.3 1154066 1155085 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1154066..1155085 Lactobacillus acidophilus NCFM 3253102 YP_194041.1 CDS LBA1172 NC_006814.3 1155137 1155976 R COG1737 transcriptional regulators; transcriptional regulator complement(1155137..1155976) Lactobacillus acidophilus NCFM 3253067 YP_194042.1 CDS LBA1173 NC_006814.3 1156105 1156287 D hypothetical protein 1156105..1156287 Lactobacillus acidophilus NCFM 3253085 YP_194043.1 CDS LBA1174 NC_006814.3 1156265 1156735 D ribose 5-phosphate 1156265..1156735 Lactobacillus acidophilus NCFM 3253060 YP_194044.1 CDS LBA1175 NC_006814.3 1156797 1157372 D potential frameshift to 1176; dehydrogenase 1156797..1157372 Lactobacillus acidophilus NCFM 3253099 YP_194045.1 CDS LBA1176 NC_006814.3 1157429 1157776 D potential frameshift to 1175; dehydrogenase 1157429..1157776 Lactobacillus acidophilus NCFM 3253072 YP_194046.1 CDS LBA1177 NC_006814.3 1157833 1158984 R YrvO; cysteine desulfurase; iron-sulfur cofactor synthesis protein complement(1157833..1158984) Lactobacillus acidophilus NCFM 3253106 YP_194047.1 CDS LBA1178 NC_006814.3 1159102 1160487 R hypothetical protein complement(1159102..1160487) Lactobacillus acidophilus NCFM 3253110 YP_194048.1 CDS LBA1180 NC_006814.3 1160468 1161445 R hypothetical protein complement(1160468..1161445) Lactobacillus acidophilus NCFM 3253059 YP_194049.1 CDS LBA1181 NC_006814.3 1161435 1162187 R hypothetical protein complement(1161435..1162187) Lactobacillus acidophilus NCFM 3253100 YP_194050.1 CDS LBA1182 NC_006814.3 1162274 1162516 D COG0681 Signal peptidase I; signal peptidase 1162274..1162516 Lactobacillus acidophilus NCFM 3252114 YP_194051.1 CDS LBA1183 NC_006814.3 1162917 1163105 D hypothetical protein 1162917..1163105 Lactobacillus acidophilus NCFM 3253105 YP_194052.1 CDS LBA1184 NC_006814.3 1163164 1163940 R hypothetical protein complement(1163164..1163940) Lactobacillus acidophilus NCFM 3252176 YP_194053.1 CDS LBA1186 NC_006814.3 1163959 1164792 R hypothetical protein complement(1163959..1164792) Lactobacillus acidophilus NCFM 3252153 YP_194054.1 CDS LBA1187 NC_006814.3 1164811 1165641 R hypothetical protein complement(1164811..1165641) Lactobacillus acidophilus NCFM 3252047 YP_194055.1 CDS LBA1188 NC_006814.3 1165641 1166348 R ABC transporter ATP-binding protein complement(1165641..1166348) Lactobacillus acidophilus NCFM 3252050 YP_194056.1 CDS gntR NC_006814.3 1166341 1166715 R GntR; transcriptional regulator complement(1166341..1166715) Lactobacillus acidophilus NCFM 3252075 YP_194057.1 CDS pepT NC_006814.3 1167013 1168260 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(1167013..1168260) Lactobacillus acidophilus NCFM 3252073 YP_194058.1 CDS LBA1191 NC_006814.3 1168287 1169084 R hypothetical protein complement(1168287..1169084) Lactobacillus acidophilus NCFM 3252107 YP_194059.1 CDS LBA1192 NC_006814.3 1169077 1169763 R COG2384 Predicted SAM-dependent methyltransferase; methyltransferase complement(1169077..1169763) Lactobacillus acidophilus NCFM 3252112 YP_194060.1 CDS mutT NC_006814.3 1169862 1170302 D MutT; mutator protein 1169862..1170302 Lactobacillus acidophilus NCFM 3252086 YP_194061.1 CDS LBA1194 NC_006814.3 1170302 1170967 D potential frameshift to 1195; enterolysin A 1170302..1170967 Lactobacillus acidophilus NCFM 3252103 YP_194062.1 CDS LBA1195 NC_006814.3 1170939 1171031 D potential frameshift to 1194; hypothetical protein; enterolysin A 1170939..1171031 Lactobacillus acidophilus NCFM 3251542 YP_194063.1 CDS rpoD NC_006814.3 1171021 1172091 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1171021..1172091) Lactobacillus acidophilus NCFM 3252069 YP_194064.1 CDS LBA1197 NC_006814.3 1172133 1173983 R DNA primase complement(1172133..1173983) Lactobacillus acidophilus NCFM 3251181 YP_194065.1 CDS glyS NC_006814.3 1174006 1176069 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(1174006..1176069) Lactobacillus acidophilus NCFM 3252088 YP_194066.1 CDS glyQ NC_006814.3 1176062 1176979 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1176062..1176979) Lactobacillus acidophilus NCFM 3252087 YP_194067.1 CDS recO NC_006814.3 1177238 1177990 R RecO; DNA repair protein complement(1177238..1177990) Lactobacillus acidophilus NCFM 3251182 YP_194068.1 CDS era NC_006814.3 1178087 1178992 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1178087..1178992) Lactobacillus acidophilus NCFM 3251203 YP_194069.1 CDS LBA1202 NC_006814.3 1178994 1179518 R COG0319 Predicted metal-dependent hydrolase; hypothetical protein complement(1178994..1179518) Lactobacillus acidophilus NCFM 3252070 YP_194070.1 CDS phoH NC_006814.3 1179521 1180480 R PhoH; PhoH family phosphate starvation-induced protein complement(1179521..1180480) Lactobacillus acidophilus NCFM 3252058 YP_194071.1 CDS LBA1204 NC_006814.3 1180505 1180948 R hypothetical protein complement(1180505..1180948) Lactobacillus acidophilus NCFM 3252064 YP_194072.1 CDS rpsU NC_006814.3 1181214 1181390 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1181214..1181390) Lactobacillus acidophilus NCFM 3252115 YP_194073.1 CDS LBA1206 NC_006814.3 1181656 1182492 D hypothetical protein 1181656..1182492 Lactobacillus acidophilus NCFM 3252066 YP_194074.1 CDS LBA1207 NC_006814.3 1182662 1183303 D enterolysin A 1182662..1183303 Lactobacillus acidophilus NCFM 3252094 YP_194075.1 CDS msrA NC_006814.3 1183428 1183997 D MsrA; peptide methionine sulfoxide reductase 1183428..1183997 Lactobacillus acidophilus NCFM 3252084 YP_194076.1 CDS LBA1209 NC_006814.3 1184082 1184960 D COG1284 Uncharacterized conserved protein; hypothetical protein 1184082..1184960 Lactobacillus acidophilus NCFM 3252105 YP_194077.1 CDS repA NC_006814.3 1185188 1185832 D RepA; metalloprotease, insulinase; temperature-sensitive replication protein 1185188..1185832 Lactobacillus acidophilus NCFM 3252083 YP_194078.1 CDS thrB NC_006814.3 1185863 1186726 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(1185863..1186726) Lactobacillus acidophilus NCFM 3251487 YP_194079.1 CDS LBA1212 NC_006814.3 1186751 1187983 R homoserine dehydrogenase Hdh complement(1186751..1187983) Lactobacillus acidophilus NCFM 3252097 YP_194080.1 CDS thrC NC_006814.3 1188099 1189589 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1188099..1189589 Lactobacillus acidophilus NCFM 3252065 YP_194081.1 CDS LBA1215 NC_006814.3 1189606 1190967 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 1189606..1190967 Lactobacillus acidophilus NCFM 3252266 YP_194082.1 CDS LBA1216 NC_006814.3 1191339 1192964 R pheromone-peptide binding protein complement(1191339..1192964) Lactobacillus acidophilus NCFM 3252282 YP_194083.1 CDS LBA1217 NC_006814.3 1194082 1194696 D acetyltransferase 1194082..1194696 Lactobacillus acidophilus NCFM 3252110 YP_194084.1 CDS LBA1218 NC_006814.3 1195048 1197141 R mucus binding protein complement(1195048..1197141) Lactobacillus acidophilus NCFM 3252111 YP_194085.1 CDS LBA1219 NC_006814.3 1197150 1198427 R lipase complement(1197150..1198427) Lactobacillus acidophilus NCFM 3252076 YP_194086.1 CDS LBA1220 NC_006814.3 1198571 1199896 D COG1249 Pyruvate-2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component; pyridine mercuric reductase 1198571..1199896 Lactobacillus acidophilus NCFM 3252327 YP_194087.1 CDS LBA1221 NC_006814.3 1200080 1200181 R hypothetical protein complement(1200080..1200181) Lactobacillus acidophilus NCFM 3252325 YP_194090.1 CDS LBA1225 NC_006814.3 1201704 1203209 R hypothetical protein complement(1201704..1203209) Lactobacillus acidophilus NCFM 3252150 YP_194091.1 CDS LBA1226 NC_006814.3 1203279 1203947 R hypothetical Cytosolic protein; hypothetical protein complement(1203279..1203947) Lactobacillus acidophilus NCFM 3252181 YP_194092.1 CDS LBA1227 NC_006814.3 1204051 1204599 R similar to complement component C7 precursor; hypothetical protein complement(1204051..1204599) Lactobacillus acidophilus NCFM 3252185 YP_194093.1 CDS LBA1229 NC_006814.3 1204689 1205309 R transcriptional regulator; hypothetical protein complement(1204689..1205309) Lactobacillus acidophilus NCFM 3252182 YP_194094.1 CDS LBA1230 NC_006814.3 1205299 1205460 R hypothetical protein complement(1205299..1205460) Lactobacillus acidophilus NCFM 3252172 YP_194095.1 CDS LBA1231 NC_006814.3 1205481 1206647 R hypothetical protein complement(1205481..1206647) Lactobacillus acidophilus NCFM 3252175 YP_194096.1 CDS citX NC_006814.3 1206717 1207259 R apo-citrate lyase complement(1206717..1207259) Lactobacillus acidophilus NCFM 3252243 YP_194097.1 CDS lysR NC_006814.3 1207292 1208143 R transcriptional regulator complement(1207292..1208143) Lactobacillus acidophilus NCFM 3252170 YP_194098.1 CDS LBA1234 NC_006814.3 1208271 1210544 D cation-transporting ATPase 1208271..1210544 Lactobacillus acidophilus NCFM 3252156 YP_194099.1 CDS LBA1235 NC_006814.3 1210589 1211131 R cell envelope-associated protein PrtH; lactocepin S-layer protein complement(1210589..1211131) Lactobacillus acidophilus NCFM 3252167 YP_194100.1 CDS LBA1236 NC_006814.3 1211227 1212717 D cardiolipin synthase Cls 1211227..1212717 Lactobacillus acidophilus NCFM 3252218 YP_194101.1 CDS metA NC_006814.3 1212837 1213625 D MetA; homoserine O-succinyltransferase 1212837..1213625 Lactobacillus acidophilus NCFM 3252180 YP_194102.1 CDS LBA1238 NC_006814.3 1213638 1214567 D cysteine synthase 1213638..1214567 Lactobacillus acidophilus NCFM 3252198 YP_194103.1 CDS LBA1239 NC_006814.3 1214682 1215773 D hypothetical protein 1214682..1215773 Lactobacillus acidophilus NCFM 3252203 YP_194104.1 CDS citG NC_006814.3 1215819 1216634 R catalyzes the reversible formation of 2'-(5''-triphosphoribosyl)-3'dephospho-CoA from 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase complement(1215819..1216634) Lactobacillus acidophilus NCFM 3252148 YP_194105.1 CDS LBA1241 NC_006814.3 1217331 1217777 R hypothetical protein complement(1217331..1217777) Lactobacillus acidophilus NCFM 3252184 YP_194106.1 CDS aprT NC_006814.3 1217850 1218377 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1217850..1218377) Lactobacillus acidophilus NCFM 3252225 YP_194107.1 CDS recJ NC_006814.3 1218482 1220755 R RecJ; COG0608 Single-stranded DNA-specific exonuclease; single-stranded-DNA-specific exonuclease complement(1218482..1220755) Lactobacillus acidophilus NCFM 3252232 YP_194108.1 CDS srtA NC_006814.3 1220877 1221566 R SrtA; sortase complement(1220877..1221566) Lactobacillus acidophilus NCFM 3252234 YP_194109.1 CDS lepA NC_006814.3 1221739 1223577 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1221739..1223577) Lactobacillus acidophilus NCFM 3252191 YP_194110.1 CDS dnaJ NC_006814.3 1223713 1224867 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(1223713..1224867) Lactobacillus acidophilus NCFM 3252245 YP_194111.1 CDS dnaK NC_006814.3 1224951 1226795 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1224951..1226795) Lactobacillus acidophilus NCFM 3252240 YP_194112.1 CDS grpE NC_006814.3 1226811 1227395 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1226811..1227395) Lactobacillus acidophilus NCFM 3252164 YP_194113.1 CDS hrcA NC_006814.3 1227408 1228457 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(1227408..1228457) Lactobacillus acidophilus NCFM 3252236 YP_194114.1 CDS LBA1250 NC_006814.3 1228557 1230068 R ABC transporter ATP-binding protein complement(1228557..1230068) Lactobacillus acidophilus NCFM 3252238 YP_194115.1 CDS LBA1251 NC_006814.3 1230067 1230279 D hypothetical protein 1230067..1230279 Lactobacillus acidophilus NCFM 3252063 YP_194116.1 CDS ribC NC_006814.3 1230319 1231248 R COG0196 FAD synthase; riboflavin kinase complement(1230319..1231248) Lactobacillus acidophilus NCFM 3252231 YP_194117.1 CDS truB NC_006814.3 1231269 1232162 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1231269..1232162) Lactobacillus acidophilus NCFM 3252227 YP_194118.1 CDS rbfA NC_006814.3 1232213 1232578 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1232213..1232578) Lactobacillus acidophilus NCFM 3252193 YP_194119.1 CDS infB NC_006814.3 1232598 1235231 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1232598..1235231) Lactobacillus acidophilus NCFM 3252165 YP_194120.1 CDS LBA1256 NC_006814.3 1235236 1235547 R L7A family ribosomal protein complement(1235236..1235547) Lactobacillus acidophilus NCFM 3252205 YP_194121.1 CDS LBA1258 NC_006814.3 1235550 1235846 R COG2740 Predicted nucleic-acid-binding protein; hypothetical protein complement(1235550..1235846) Lactobacillus acidophilus NCFM 3252224 YP_194122.1 CDS nusA NC_006814.3 1235855 1237024 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1235855..1237024) Lactobacillus acidophilus NCFM 3252246 YP_194123.1 CDS LBA1260 NC_006814.3 1237044 1237520 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1237044..1237520) Lactobacillus acidophilus NCFM 3252443 YP_194124.1 CDS LBA1261 NC_006814.3 1237623 1241936 R DNA polymerase III subunit alpha complement(1237623..1241936) Lactobacillus acidophilus NCFM 3252248 YP_194125.1 CDS LBA1262 NC_006814.3 1241942 1243639 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1241942..1243639) Lactobacillus acidophilus NCFM 3252263 YP_194126.1 CDS LBA1263 NC_006814.3 1243681 1244937 R enhanced expression of pheromone protein eep complement(1243681..1244937) Lactobacillus acidophilus NCFM 3252212 YP_194127.1 CDS cdsA NC_006814.3 1244949 1245764 R CdsA; COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase complement(1244949..1245764) Lactobacillus acidophilus NCFM 3252253 YP_194128.1 CDS LBA1266 NC_006814.3 1245766 1246500 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(1245766..1246500) Lactobacillus acidophilus NCFM 3252315 YP_194129.1 CDS LBA1267 NC_006814.3 1246567 1247061 R COG0233 Ribosome recycling factor; ribosome recycling factor Rrf complement(1246567..1247061) Lactobacillus acidophilus NCFM 3252333 YP_194130.1 CDS pyrH NC_006814.3 1247061 1247786 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1247061..1247786) Lactobacillus acidophilus NCFM 3252326 YP_194131.1 CDS tsf NC_006814.3 1247957 1248982 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1247957..1248982) Lactobacillus acidophilus NCFM 3253109 YP_194132.1 CDS rpsB NC_006814.3 1249022 1249798 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1249022..1249798) Lactobacillus acidophilus NCFM 3252335 YP_194133.1 CDS LBA1271 NC_006814.3 1249962 1250993 R COG4123 Predicted O-methyltransferase; hypothetical protein complement(1249962..1250993) Lactobacillus acidophilus NCFM 3252296 YP_194134.1 CDS LBA1272 NC_006814.3 1251057 1251671 D COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; acyltransferase 1251057..1251671 Lactobacillus acidophilus NCFM 3252342 YP_194135.1 CDS LBA1274 NC_006814.3 1251773 1252954 D cyclopropane-fatty-acyl-phospholipid synthase 1251773..1252954 Lactobacillus acidophilus NCFM 3252316 YP_194136.1 CDS pepO NC_006814.3 1253002 1254945 R PepO; Neutral endopeptidase (PepO); neutral endopeptidase complement(1253002..1254945) Lactobacillus acidophilus NCFM 3252249 YP_194137.1 CDS LBA1276 NC_006814.3 1255032 1256726 R ABC transporter ATP-binding protein/permease complement(1255032..1256726) Lactobacillus acidophilus NCFM 3252338 YP_194138.1 CDS LBA1277 NC_006814.3 1256827 1258593 R ABC transporter ATP-binding protein/permease complement(1256827..1258593) Lactobacillus acidophilus NCFM 3252322 YP_194139.1 CDS LBA1278 NC_006814.3 1258677 1258895 R hypothetical protein complement(1258677..1258895) Lactobacillus acidophilus NCFM 3252317 YP_194140.1 CDS LBA1279 NC_006814.3 1258961 1259221 R COG4224 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1258961..1259221) Lactobacillus acidophilus NCFM 3252321 YP_194141.1 CDS lexA NC_006814.3 1259370 1259996 D Represses a number of genes involved in the response to DNA damage; LexA repressor 1259370..1259996 Lactobacillus acidophilus NCFM 3252363 YP_194142.1 CDS LBA1281 NC_006814.3 1260043 1260801 R acyl-CoA thioesterase complement(1260043..1260801) Lactobacillus acidophilus NCFM 3252329 YP_194143.1 CDS LBA1282 NC_006814.3 1260794 1261453 R phage related; COG1573 Uracil-DNA glycosylase; DNA polymerase complement(1260794..1261453) Lactobacillus acidophilus NCFM 3252323 YP_194144.1 CDS LBA1283 NC_006814.3 1261749 1262681 R glycosyl transferase complement(1261749..1262681) Lactobacillus acidophilus NCFM 3252358 YP_194145.1 CDS LBA1284 NC_006814.3 1262683 1264431 R cell division protein complement(1262683..1264431) Lactobacillus acidophilus NCFM 3252383 YP_194146.1 CDS LBA1285 NC_006814.3 1264465 1264893 R hypothetical protein complement(1264465..1264893) Lactobacillus acidophilus NCFM 3252344 YP_194147.1 CDS rplS NC_006814.3 1265100 1265447 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1265100..1265447) Lactobacillus acidophilus NCFM 3252396 YP_194148.1 CDS trmD NC_006814.3 1265581 1266309 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1265581..1266309) Lactobacillus acidophilus NCFM 3252426 YP_194149.1 CDS rimM NC_006814.3 1266299 1266814 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1266299..1266814) Lactobacillus acidophilus NCFM 3252376 YP_194150.1 CDS rpsP NC_006814.3 1266886 1267158 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1266886..1267158) Lactobacillus acidophilus NCFM 3252411 YP_194151.1 CDS LBA1290 NC_006814.3 1267248 1268678 R signal recognition protein Ffh complement(1267248..1268678) Lactobacillus acidophilus NCFM 3252420 YP_194152.1 CDS LBA1291 NC_006814.3 1268682 1269023 R hypothetical protein complement(1268682..1269023) Lactobacillus acidophilus NCFM 3252398 YP_194153.1 CDS LBA1292 NC_006814.3 1269216 1270643 D aa transporter 1269216..1270643 Lactobacillus acidophilus NCFM 3252371 YP_194154.1 CDS LBA1293 NC_006814.3 1270706 1271113 R transcriptional regulator complement(1270706..1271113) Lactobacillus acidophilus NCFM 3252397 YP_194155.1 CDS LBA1294 NC_006814.3 1271180 1272601 R COG4690 Dipeptidase; dipeptidase complement(1271180..1272601) Lactobacillus acidophilus NCFM 3252382 YP_194156.1 CDS ftsY NC_006814.3 1272643 1273938 R FtsY; cell division protein complement(1272643..1273938) Lactobacillus acidophilus NCFM 3252432 YP_194157.1 CDS LBA1296 NC_006814.3 1273939 1277508 R COG1196 Chromosome segregation ATPases; chromosome segregation protein Smc complement(1273939..1277508) Lactobacillus acidophilus NCFM 3252377 YP_194158.1 CDS rnc NC_006814.3 1277521 1278207 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1277521..1278207) Lactobacillus acidophilus NCFM 3252409 YP_194159.1 CDS LBA1298 NC_006814.3 1278259 1278360 D hypothetical protein 1278259..1278360 Lactobacillus acidophilus NCFM 3252437 YP_194160.1 CDS LBA1299 NC_006814.3 1278329 1279711 D transposase 1278329..1279711 Lactobacillus acidophilus NCFM 3252425 YP_194161.1 CDS oppA NC_006814.3 1279788 1281545 R OppA; oligopeptide ABC transporter substrate binding protein complement(1279788..1281545) Lactobacillus acidophilus NCFM 3252424 YP_194162.1 CDS oppA NC_006814.3 1281747 1283516 R OppA; oligopeptide ABC transporter substrate binding protein complement(1281747..1283516) Lactobacillus acidophilus NCFM 3252444 YP_194163.1 CDS oppC NC_006814.3 1283728 1284657 R OppC; oligopeptide ABC transporter permease complement(1283728..1284657) Lactobacillus acidophilus NCFM 3252406 YP_194164.1 CDS oppB NC_006814.3 1284672 1285631 R OppB; oligopeptide transport protein complement(1284672..1285631) Lactobacillus acidophilus NCFM 3252412 YP_194165.1 CDS oppF NC_006814.3 1285634 1286620 R OppF; oligopeptide ABC transporter ATP-binding protein complement(1285634..1286620) Lactobacillus acidophilus NCFM 3252408 YP_194166.1 CDS oppD NC_006814.3 1286624 1287655 R OppD; oligopeptide ABC transporter ATP-binding protein complement(1286624..1287655) Lactobacillus acidophilus NCFM 3252410 YP_194167.1 CDS acpP NC_006814.3 1287772 1288014 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1287772..1288014) Lactobacillus acidophilus NCFM 3252380 YP_194168.1 CDS plsX NC_006814.3 1288047 1289048 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(1288047..1289048) Lactobacillus acidophilus NCFM 3252552 YP_194169.1 CDS recG NC_006814.3 1289068 1291104 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1289068..1291104) Lactobacillus acidophilus NCFM 3252556 YP_194170.1 CDS LBA1310 NC_006814.3 1291109 1292770 R dihydroacetone kinase complement(1291109..1292770) Lactobacillus acidophilus NCFM 3252616 YP_194171.1 CDS LBA1311 NC_006814.3 1292792 1293154 R conserved hypothetical protein; alkaline shock protein complement(1292792..1293154) Lactobacillus acidophilus NCFM 3252595 YP_194172.1 CDS rpmB NC_006814.3 1293322 1293507 D required for 70S ribosome assembly; 50S ribosomal protein L28 1293322..1293507 Lactobacillus acidophilus NCFM 3252446 YP_194173.1 CDS LBA1313 NC_006814.3 1293618 1293923 R ATP-dependent Lon protease; hypothetical protein complement(1293618..1293923) Lactobacillus acidophilus NCFM 3252365 YP_194174.1 CDS LBA1314 NC_006814.3 1293970 1294656 R COG1564 Thiamine pyrophosphokinase; pyrophosphokinase complement(1293970..1294656) Lactobacillus acidophilus NCFM 3252518 YP_194175.1 CDS LBA1315 NC_006814.3 1294656 1295306 R ribulose-5-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(1294656..1295306) Lactobacillus acidophilus NCFM 3252508 YP_194176.1 CDS LBA1316 NC_006814.3 1295317 1296207 R COG1162 Predicted GTPases; hypothetical protein complement(1295317..1296207) Lactobacillus acidophilus NCFM 3252521 YP_194177.1 CDS LBA1317 NC_006814.3 1296209 1298233 R serine-threonine protein kinase complement(1296209..1298233) Lactobacillus acidophilus NCFM 3252519 YP_194178.1 CDS LBA1318 NC_006814.3 1298223 1298978 R COG0631 Serine-threonine protein phosphatase; protein serine-threonine phosphatase complement(1298223..1298978) Lactobacillus acidophilus NCFM 3252494 YP_194179.1 CDS LBA1319 NC_006814.3 1298983 1300350 R rRNA methylase complement(1298983..1300350) Lactobacillus acidophilus NCFM 3252512 YP_194180.1 CDS LBA1321 NC_006814.3 1300301 1301245 R COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase FMT complement(1300301..1301245) Lactobacillus acidophilus NCFM 3252525 YP_194181.1 CDS priA NC_006814.3 1301258 1303657 R PriA; primosomal replication factor complement(1301258..1303657) Lactobacillus acidophilus NCFM 3252510 YP_194182.1 CDS rpoZ NC_006814.3 1303708 1303932 R RpoZ; COG1758 DNA-directed RNA polymerase, subunit K-omega; DNA-directed RNA polymerase subunit omega complement(1303708..1303932) Lactobacillus acidophilus NCFM 3252522 YP_194183.1 CDS gmk NC_006814.3 1303935 1304549 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1303935..1304549) Lactobacillus acidophilus NCFM 3252535 YP_194184.1 CDS LBA1326 NC_006814.3 1304660 1305097 R hypothetical protein complement(1304660..1305097) Lactobacillus acidophilus NCFM 3252480 YP_194185.1 CDS recN NC_006814.3 1305090 1306772 R RecN; DNA repair protein complement(1305090..1306772) Lactobacillus acidophilus NCFM 3252511 YP_194186.1 CDS LBA1328 NC_006814.3 1306783 1307595 R COG1189 Predicted rRNA methylase; hemolysin-like protein complement(1306783..1307595) Lactobacillus acidophilus NCFM 3252493 YP_194187.1 CDS LBA1329 NC_006814.3 1307596 1308465 R COG0142 Geranylgeranyl pyrophosphate synthase; geranylgeranyl diphosphate (GGPP) synthase complement(1307596..1308465) Lactobacillus acidophilus NCFM 3252489 YP_194188.1 CDS xseB NC_006814.3 1308468 1308710 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1308468..1308710) Lactobacillus acidophilus NCFM 3252530 YP_194189.1 CDS xseA NC_006814.3 1308691 1310058 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1308691..1310058) Lactobacillus acidophilus NCFM 3252477 YP_194190.1 CDS folD NC_006814.3 1310045 1310896 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1310045..1310896) Lactobacillus acidophilus NCFM 3252498 YP_194191.1 CDS nusB NC_006814.3 1311190 1311582 R NusB; COG0781 transcriptional termination factor; transcriptional termination factor complement(1311190..1311582) Lactobacillus acidophilus NCFM 3252517 YP_194192.1 CDS LBA1334 NC_006814.3 1311582 1312016 R alkaline shock protein complement(1311582..1312016) Lactobacillus acidophilus NCFM 3252483 YP_194193.1 CDS LBA1335 NC_006814.3 1312035 1312604 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1312035..1312604) Lactobacillus acidophilus NCFM 3252470 YP_194194.1 CDS pepP NC_006814.3 1312685 1313794 R COG0006 Xaa-Pro aminopeptidase; X-Pro dipeptidase complement(1312685..1313794) Lactobacillus acidophilus NCFM 3252520 YP_194195.1 CDS rpmA NC_006814.3 1313919 1314209 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1313919..1314209) Lactobacillus acidophilus NCFM 3252421 YP_194196.1 CDS rplU NC_006814.3 1314228 1314539 R 50S ribosomal protein L21 complement(1314228..1314539) Lactobacillus acidophilus NCFM 3252385 YP_194197.1 CDS LBA1339 NC_006814.3 1314706 1315542 R COG1284 Uncharacterized conserved protein; hypothetical protein complement(1314706..1315542) Lactobacillus acidophilus NCFM 3252613 YP_194198.1 CDS LBA1340 NC_006814.3 1315629 1317002 R V-type sodium ATP synthase subunit complement(1315629..1317002) Lactobacillus acidophilus NCFM 3252532 YP_194199.1 CDS ilvE NC_006814.3 1317133 1318158 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1317133..1318158 Lactobacillus acidophilus NCFM 3252630 YP_194200.1 CDS xlyH NC_006814.3 1318209 1318388 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(1318209..1318388) Lactobacillus acidophilus NCFM 3252651 YP_194201.1 CDS LBA1343 NC_006814.3 1318462 1319043 R potential frameshift to 1344; protein PepQ complement(1318462..1319043) Lactobacillus acidophilus NCFM 3252657 YP_194202.1 CDS LBA1344 NC_006814.3 1319080 1319661 R potential frameshift to 1343; hypothetical protein; protein PepQ complement(1319080..1319661) Lactobacillus acidophilus NCFM 3252635 YP_194203.1 CDS LBA1345 NC_006814.3 1319724 1319993 R potential frameshift to 1346; OppA; oligopeptide ABC transporter substrate bindingprotein complement(1319724..1319993) Lactobacillus acidophilus NCFM 3252696 YP_194204.1 CDS oppA NC_006814.3 1319987 1320358 R potential frameshift to 1345; OppA; oligopeptide ABC transporter substrate binding protein complement(1319987..1320358) Lactobacillus acidophilus NCFM 3252702 YP_194205.1 CDS oppA NC_006814.3 1320683 1321237 R potential frameshift to 1345; OppA; peptide binding protein complement(1320683..1321237) Lactobacillus acidophilus NCFM 3252627 YP_194206.1 CDS LBA1348 NC_006814.3 1321637 1322419 R COG3231 Aminoglycoside phosphotransferase; kanamycin kinase complement(1321637..1322419) Lactobacillus acidophilus NCFM 3252618 YP_194207.1 CDS LBA1349 NC_006814.3 1322428 1324224 R COG4907 Predicted membrane protein; hypothetical protein complement(1322428..1324224) Lactobacillus acidophilus NCFM 3252606 YP_194208.1 CDS LBA1350 NC_006814.3 1324235 1325134 R CinII; alpha/beta hydrolase complement(1324235..1325134) Lactobacillus acidophilus NCFM 3252617 YP_194211.1 CDS LBA1353 NC_006814.3 1326922 1327950 D COG2364 Predicted membrane protein; hypothetical protein 1326922..1327950 Lactobacillus acidophilus NCFM 3252626 YP_194212.1 CDS LBA1354 NC_006814.3 1328010 1328114 R hypothetical protein complement(1328010..1328114) Lactobacillus acidophilus NCFM 3252700 YP_194213.1 CDS lipA NC_006814.3 1328354 1329250 D COG0657 Esterase-lipase; lipase 1328354..1329250 Lactobacillus acidophilus NCFM 3252703 YP_194214.1 CDS LBA1356 NC_006814.3 1329261 1329620 D Arsenate reductase; arsenate reductase 1329261..1329620 Lactobacillus acidophilus NCFM 3252724 YP_194215.1 CDS LBA1357 NC_006814.3 1329655 1331238 R ABC transporter ATP-binding protein/permease complement(1329655..1331238) Lactobacillus acidophilus NCFM 3252730 YP_194216.1 CDS LBA1358 NC_006814.3 1331238 1332815 R ABC transporter ATP-binding protein/permease complement(1331238..1332815) Lactobacillus acidophilus NCFM 3252712 YP_194217.1 CDS LBA1359 NC_006814.3 1333148 1333963 R hypothetical protein complement(1333148..1333963) Lactobacillus acidophilus NCFM 3252718 YP_194220.1 CDS lacA NC_006814.3 1336153 1338195 R beta-galactosidase complement(1336153..1338195) Lactobacillus acidophilus NCFM 3252620 YP_194221.1 CDS LBA1365 NC_006814.3 1338209 1340488 R catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase complement(1338209..1340488) Lactobacillus acidophilus NCFM 3252679 YP_194222.1 CDS LBA1366 NC_006814.3 1340493 1341983 R Beta-glucosidase; beta-glucosidase complement(1340493..1341983) Lactobacillus acidophilus NCFM 3252609 YP_194223.1 CDS LBA1367 NC_006814.3 1341973 1342857 R transcriptional regulator, glucose kinase complement(1341973..1342857) Lactobacillus acidophilus NCFM 3252687 YP_194224.1 CDS xylR NC_006814.3 1342995 1344140 D xylose operon regulator; transcriptional xylose repressor 1342995..1344140 Lactobacillus acidophilus NCFM 3252612 YP_194225.1 CDS celB NC_006814.3 1344271 1345524 D PTS system cellobiose-specific transporter subunit IIC 1344271..1345524 Lactobacillus acidophilus NCFM 3252689 YP_194226.1 CDS LBA1370 NC_006814.3 1345644 1346255 R phage-related hypothetical protein; bacteriophage-like protein complement(1345644..1346255) Lactobacillus acidophilus NCFM 3252601 YP_194227.1 CDS LBA1371 NC_006814.3 1346635 1347018 R prophage ps3 protein 01; transcriptional regulator phage-related complement(1346635..1347018) Lactobacillus acidophilus NCFM 3252662 YP_194228.1 CDS LBA1372 NC_006814.3 1347029 1347322 R similar to Orf20 Bacteriophage bIL311; bacteriophage-like protein complement(1347029..1347322) Lactobacillus acidophilus NCFM 3252735 YP_194229.1 CDS pepX NC_006814.3 1347552 1349933 D catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 1347552..1349933 Lactobacillus acidophilus NCFM 3252734 YP_194230.1 CDS msrA NC_006814.3 1349997 1350434 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1349997..1350434) Lactobacillus acidophilus NCFM 3252731 YP_194231.1 CDS LBA1375 NC_006814.3 1350487 1350879 R hypothetical protein complement(1350487..1350879) Lactobacillus acidophilus NCFM 3252670 YP_194232.1 CDS LBA1376 NC_006814.3 1350888 1351751 R transmembrane protein complement(1350888..1351751) Lactobacillus acidophilus NCFM 3252719 YP_194233.1 CDS LBA1377 NC_006814.3 1352001 1355054 R mucus binding protein complement(1352001..1355054) Lactobacillus acidophilus NCFM 3252628 YP_194234.1 CDS LBA1378 NC_006814.3 1355660 1355860 R biofilm-associated surface protein complement(1355660..1355860) Lactobacillus acidophilus NCFM 3252647 YP_194235.1 CDS carB NC_006814.3 1356204 1359392 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1356204..1359392) Lactobacillus acidophilus NCFM 3252607 YP_194236.1 CDS carA NC_006814.3 1359385 1360470 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1359385..1360470) Lactobacillus acidophilus NCFM 3252649 YP_194237.1 CDS pyrC NC_006814.3 1360471 1361748 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1360471..1361748) Lactobacillus acidophilus NCFM 3252590 YP_194238.1 CDS pyrB NC_006814.3 1361748 1362704 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(1361748..1362704) Lactobacillus acidophilus NCFM 3252677 YP_194239.1 CDS pyrR NC_006814.3 1362845 1363387 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(1362845..1363387) Lactobacillus acidophilus NCFM 3252655 YP_194240.1 CDS pyrD NC_006814.3 1363564 1364487 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1363564..1364487) Lactobacillus acidophilus NCFM 3252605 YP_194241.1 CDS LBA1385 NC_006814.3 1364502 1364594 D hypothetical protein 1364502..1364594 Lactobacillus acidophilus NCFM 3252545 YP_194242.1 CDS pyrF NC_006814.3 1364740 1365447 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1364740..1365447 Lactobacillus acidophilus NCFM 3252592 YP_194243.1 CDS pyrE NC_006814.3 1365447 1366085 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1365447..1366085 Lactobacillus acidophilus NCFM 3252688 YP_194244.1 CDS LBA1388 NC_006814.3 1366155 1366802 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(1366155..1366802) Lactobacillus acidophilus NCFM 3252602 YP_194245.1 CDS LBA1389 NC_006814.3 1367232 1369859 D COG0474 Cation transport ATPase; cation-transporting ATPase 1367232..1369859 Lactobacillus acidophilus NCFM 3252599 YP_194246.1 CDS LBA1390 NC_006814.3 1369943 1371289 D cloride channel-like protein 1369943..1371289 Lactobacillus acidophilus NCFM 3252593 YP_194247.1 CDS LBA1391 NC_006814.3 1371412 1372080 D hypothetical protein 1371412..1372080 Lactobacillus acidophilus NCFM 3252643 YP_194248.1 CDS LBA1392 NC_006814.3 1372196 1385176 R mucus binding protein precursor Mub complement(1372196..1385176) Lactobacillus acidophilus NCFM 3252633 YP_194249.1 CDS LBA1393 NC_006814.3 1385479 1385991 R acetyltransferase complement(1385479..1385991) Lactobacillus acidophilus NCFM 3252614 YP_194250.1 CDS LBA1394 NC_006814.3 1386063 1386359 R GLP_703_9564_7504; hypothetical protein complement(1386063..1386359) Lactobacillus acidophilus NCFM 3252717 YP_194251.1 CDS LBA1395 NC_006814.3 1386774 1387625 D outer membrane lipoprotein 1386774..1387625 Lactobacillus acidophilus NCFM 3252624 YP_194252.1 CDS LBA1396 NC_006814.3 1387663 1387956 R conserved domain protein; hypothetical protein complement(1387663..1387956) Lactobacillus acidophilus NCFM 3252765 YP_194253.1 CDS sdhB NC_006814.3 1388134 1388796 D L-serine dehydratase subunit beta 1388134..1388796 Lactobacillus acidophilus NCFM 3253056 YP_194254.1 CDS sdhA NC_006814.3 1388810 1389691 D L-serine dehydratase subunit alpha 1388810..1389691 Lactobacillus acidophilus NCFM 3253054 YP_194255.1 CDS LBA1399 NC_006814.3 1389701 1390015 D hypothetical protein 1389701..1390015 Lactobacillus acidophilus NCFM 3252755 YP_194256.1 CDS oppA NC_006814.3 1390329 1392074 R OppA; oligopeptide ABC transporter substrate binding protein complement(1390329..1392074) Lactobacillus acidophilus NCFM 3252764 YP_194257.1 CDS LBA1401 NC_006814.3 1392344 1393708 R Nadh; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; peroxidase (Npx) complement(1392344..1393708) Lactobacillus acidophilus NCFM 3253053 YP_194258.1 CDS LBA1402 NC_006814.3 1393975 1394322 R hypothetical protein complement(1393975..1394322) Lactobacillus acidophilus NCFM 3252776 YP_194259.1 CDS LBA1403 NC_006814.3 1394322 1394600 R hypothetical protein complement(1394322..1394600) Lactobacillus acidophilus NCFM 3252773 YP_194260.1 CDS LBA1404 NC_006814.3 1394671 1395309 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; oxidoreductase complement(1394671..1395309) Lactobacillus acidophilus NCFM 3253058 YP_194261.1 CDS chpA NC_006814.3 1395543 1395884 R ChpA; ppGpp-regulated growth inhibitor complement(1395543..1395884) Lactobacillus acidophilus NCFM 3252769 YP_194262.1 CDS LBA1406 NC_006814.3 1395995 1396120 R hypothetical protein complement(1395995..1396120) Lactobacillus acidophilus NCFM 3252784 YP_194263.1 CDS LBA1407 NC_006814.3 1396186 1396557 R hypothetical protein complement(1396186..1396557) Lactobacillus acidophilus NCFM 3253063 YP_194264.1 CDS LBA1408 NC_006814.3 1396577 1397203 R COG4832 Uncharacterized conserved protein; hypothetical protein complement(1396577..1397203) Lactobacillus acidophilus NCFM 3253064 YP_194265.1 CDS LBA1409 NC_006814.3 1397386 1398174 R hypothetical protein complement(1397386..1398174) Lactobacillus acidophilus NCFM 3253062 YP_194266.1 CDS lysR NC_006814.3 1398292 1399146 R transcriptional regulator complement(1398292..1399146) Lactobacillus acidophilus NCFM 3252787 YP_194267.1 CDS LBA1411 NC_006814.3 1399255 1401369 D fumarate reductase flavoprotein subunit 1399255..1401369 Lactobacillus acidophilus NCFM 3252786 YP_194268.1 CDS LBA1412 NC_006814.3 1401616 1401771 R hypothetical protein complement(1401616..1401771) Lactobacillus acidophilus NCFM 3252825 YP_194269.1 CDS LBA1413 NC_006814.3 1402240 1403343 D COG2199 FOG GGDEF domain; regulator components 1402240..1403343 Lactobacillus acidophilus NCFM 3252819 YP_194270.1 CDS LBA1414 NC_006814.3 1403474 1404169 D COG2200 FOG EAL domain; hypothetical protein 1403474..1404169 Lactobacillus acidophilus NCFM 3253066 YP_194271.1 CDS LBA1415 NC_006814.3 1404207 1405010 R hypothetical protein complement(1404207..1405010) Lactobacillus acidophilus NCFM 3252812 YP_194272.1 CDS LBA1416 NC_006814.3 1405010 1406287 R glycosyl transferase family protein complement(1405010..1406287) Lactobacillus acidophilus NCFM 3252816 YP_194273.1 CDS LBA1417 NC_006814.3 1406284 1406796 R hypothetical protein complement(1406284..1406796) Lactobacillus acidophilus NCFM 3252820 YP_194274.1 CDS LBA1418 NC_006814.3 1406954 1407874 R NADH-dependent oxidoreductase complement(1406954..1407874) Lactobacillus acidophilus NCFM 3252829 YP_194275.1 CDS LBA1419 NC_006814.3 1408156 1408302 D hypothetical protein 1408156..1408302 Lactobacillus acidophilus NCFM 3252830 YP_194276.1 CDS LBA1420 NC_006814.3 1408342 1409505 D transposase 1408342..1409505 Lactobacillus acidophilus NCFM 3253080 YP_194277.1 CDS LBA1421 NC_006814.3 1409744 1409917 R COG1902 NADHflavin oxidoreductases, Old Yellow Enzyme family; NADH-dependent oxidoreductase complement(1409744..1409917) Lactobacillus acidophilus NCFM 3252872 YP_194278.1 CDS pxnC NC_006814.3 1410032 1410586 R pyrazinamidase-nicotinamidase complement(1410032..1410586) Lactobacillus acidophilus NCFM 3252868 YP_194279.1 CDS LBA1423 NC_006814.3 1410679 1410813 R hypothetical protein complement(1410679..1410813) Lactobacillus acidophilus NCFM 3252882 YP_194280.1 CDS LBA1424 NC_006814.3 1410890 1412386 R COG0531 Amino acid transporters; amino acid permease complement(1410890..1412386) Lactobacillus acidophilus NCFM 3252901 YP_194281.1 CDS LBA1425 NC_006814.3 1412518 1413213 R cell surface hydrolase; hypothetical protein complement(1412518..1413213) Lactobacillus acidophilus NCFM 3252899 YP_194282.1 CDS LBA1426 NC_006814.3 1413555 1414313 R hypothetical protein complement(1413555..1414313) Lactobacillus acidophilus NCFM 3253090 YP_194283.1 CDS LBA1427 NC_006814.3 1414413 1415105 R oxidoreductase complement(1414413..1415105) Lactobacillus acidophilus NCFM 3252895 YP_194284.1 CDS LBA1428 NC_006814.3 1415117 1415524 R hypothetical protein complement(1415117..1415524) Lactobacillus acidophilus NCFM 3253091 YP_194285.1 CDS LBA1429 NC_006814.3 1415542 1416720 R transporter-membrane protein complement(1415542..1416720) Lactobacillus acidophilus NCFM 3253092 YP_194286.1 CDS LBA1430 NC_006814.3 1416769 1418043 R histidine protein kinase complement(1416769..1418043) Lactobacillus acidophilus NCFM 3252905 YP_194287.1 CDS LBA1431 NC_006814.3 1418053 1418718 R COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator complement(1418053..1418718) Lactobacillus acidophilus NCFM 3252949 YP_194288.1 CDS LBA1432 NC_006814.3 1418726 1419340 R hypothetical protein complement(1418726..1419340) Lactobacillus acidophilus NCFM 3252946 YP_194289.1 CDS LBA1433 NC_006814.3 1419565 1420560 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 1419565..1420560 Lactobacillus acidophilus NCFM 3252939 YP_194290.1 CDS LBA1434 NC_006814.3 1420573 1421157 D dihydroxyacetone kinase 1420573..1421157 Lactobacillus acidophilus NCFM 3252937 YP_194291.1 CDS LBA1435 NC_006814.3 1421154 1421525 D hypothetical protein 1421154..1421525 Lactobacillus acidophilus NCFM 3252913 YP_194292.1 CDS glpF NC_006814.3 1421543 1422250 D GlpF; glycerol uptake facilitator protein 1421543..1422250 Lactobacillus acidophilus NCFM 3252917 YP_194293.1 CDS LBA1437 NC_006814.3 1422499 1423941 R sucrose phosphorylase complement(1422499..1423941) Lactobacillus acidophilus NCFM 3252916 YP_194294.1 CDS melA NC_006814.3 1423951 1426149 R alpha-galactosidase complement(1423951..1426149) Lactobacillus acidophilus NCFM 3252915 YP_194295.1 CDS LBA1439 NC_006814.3 1426161 1427273 R MsmKII; ABC transporter nucleotide binding protein complement(1426161..1427273) Lactobacillus acidophilus NCFM 3252934 YP_194296.1 CDS LBA1440 NC_006814.3 1427305 1428138 R MsmGII; ABC transporter permease complement(1427305..1428138) Lactobacillus acidophilus NCFM 3252970 YP_194297.1 CDS LBA1441 NC_006814.3 1428151 1429026 R MsmFII; ABC transporter permease complement(1428151..1429026) Lactobacillus acidophilus NCFM 3252966 YP_194298.1 CDS LBA1442 NC_006814.3 1429040 1430296 R MsmEII; sugar ABC transporter substrate-binding protein complement(1429040..1430296) Lactobacillus acidophilus NCFM 3252953 YP_194299.1 CDS LBA1443 NC_006814.3 1430540 1431379 D MsmRII; msm operon regulatory protein 1430540..1431379 Lactobacillus acidophilus NCFM 3253014 YP_194300.1 CDS LBA1444 NC_006814.3 1431437 1431871 R MerR; transcriptional regulator family protein complement(1431437..1431871) Lactobacillus acidophilus NCFM 3253009 YP_194301.1 CDS LBA1446 NC_006814.3 1432032 1433504 D multidrug resistance protein 1432032..1433504 Lactobacillus acidophilus NCFM 3252999 YP_194302.1 CDS LBA1447 NC_006814.3 1433504 1434085 D hypothetical protein 1433504..1434085 Lactobacillus acidophilus NCFM 3253002 YP_194303.1 CDS LBA1448 NC_006814.3 1434024 1434212 R alpha-galactosidase 1 (melibiase); alpha-galactosidase complement(1434024..1434212) Lactobacillus acidophilus NCFM 3253008 YP_194304.1 CDS LBA1449 NC_006814.3 1434317 1434631 R hypothetical protein complement(1434317..1434631) Lactobacillus acidophilus NCFM 3252998 YP_194305.1 CDS LBA1450 NC_006814.3 1434603 1434878 R hypothetical protein complement(1434603..1434878) Lactobacillus acidophilus NCFM 3252982 YP_194306.1 CDS LBA1452 NC_006814.3 1435001 1435681 R phage D3 terminase-like protein; hypothetical protein complement(1435001..1435681) Lactobacillus acidophilus NCFM 3252989 YP_194307.1 CDS LBA1454 NC_006814.3 1435904 1436146 R hypothetical protein complement(1435904..1436146) Lactobacillus acidophilus NCFM 3252987 YP_194308.1 CDS LBA1455 NC_006814.3 1436319 1437203 R N-acetylgalactosamine-4-sulfatase precursor; surface layer protein complement(1436319..1437203) Lactobacillus acidophilus NCFM 3252997 YP_194309.1 CDS galM NC_006814.3 1437361 1438347 R mutarotase; galactose-1-epimerase complement(1437361..1438347) Lactobacillus acidophilus NCFM 3253030 YP_194310.1 CDS galT NC_006814.3 1438349 1439812 R catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase complement(1438349..1439812) Lactobacillus acidophilus NCFM 3253041 YP_194311.1 CDS galK NC_006814.3 1439832 1440995 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(1439832..1440995) Lactobacillus acidophilus NCFM 3253029 YP_194312.1 CDS LBA1460 NC_006814.3 1441212 1442231 R cell surface protein precursor; mucus binding protein complement(1441212..1442231) Lactobacillus acidophilus NCFM 3253069 YP_194313.1 CDS LBA1461 NC_006814.3 1442396 1443025 R regulator complement(1442396..1443025) Lactobacillus acidophilus NCFM 3251246 YP_194314.1 CDS lacZ NC_006814.3 1443147 1445150 R beta-D-galactosidase; beta-galactosidase complement(1443147..1445150) Lactobacillus acidophilus NCFM 3251504 YP_194315.1 CDS lacS NC_006814.3 1445161 1447080 R lactose permease complement(1445161..1447080) Lactobacillus acidophilus NCFM 3251415 YP_194316.1 CDS LBA1464 NC_006814.3 1447277 1448434 R is605tnpb family; transposase complement(1447277..1448434) Lactobacillus acidophilus NCFM 3251180 YP_194317.1 CDS lacR NC_006814.3 1448787 1449794 R lactose transcriptional regulator; transcription repressor of beta-galactosidasegene complement(1448787..1449794) Lactobacillus acidophilus NCFM 3251540 YP_194318.1 CDS lacL NC_006814.3 1450020 1451906 D beta-galactosidase large subunit (lactase) 1450020..1451906 Lactobacillus acidophilus NCFM 3251483 YP_194319.1 CDS lacM NC_006814.3 1451890 1452840 D beta-galactosidase small subunit 1451890..1452840 Lactobacillus acidophilus NCFM 3251495 YP_194320.1 CDS galE NC_006814.3 1452922 1453914 D UDP-galactose 4-epimerase; udp-glucose 4-epimerase 1452922..1453914 Lactobacillus acidophilus NCFM 3251215 YP_194321.1 CDS LBA1470 NC_006814.3 1454020 1455552 R hypothetical protein complement(1454020..1455552) Lactobacillus acidophilus NCFM 3251471 YP_194322.1 CDS LBA1471 NC_006814.3 1455570 1456793 R multidrug efflux permease complement(1455570..1456793) Lactobacillus acidophilus NCFM 3251247 YP_194323.1 CDS rbsR NC_006814.3 1456970 1457929 D Ribose operon repressor; ribose operon repressor 1456970..1457929 Lactobacillus acidophilus NCFM 3251214 YP_194324.1 CDS LBA1473 NC_006814.3 1457907 1460696 R alfa-L-rhamnosidase; alfa-l-rhamnosidase complement(1457907..1460696) Lactobacillus acidophilus NCFM 3251470 YP_194325.1 CDS LBA1474 NC_006814.3 1460705 1461049 R hypothetical protein complement(1460705..1461049) Lactobacillus acidophilus NCFM 3251457 YP_194326.1 CDS LBA1475 NC_006814.3 1461091 1462332 D transposase 1461091..1462332 Lactobacillus acidophilus NCFM 3251496 YP_194327.1 CDS LBA1476 NC_006814.3 1462502 1462948 R cellobiose phosphotransferase complement(1462502..1462948) Lactobacillus acidophilus NCFM 3251469 YP_194328.1 CDS LBA1477 NC_006814.3 1463005 1463913 R sugar hydrolase complement(1463005..1463913) Lactobacillus acidophilus NCFM 3251485 YP_194329.1 CDS LBA1478 NC_006814.3 1463916 1466120 R PTS systen transporter subunit IIABC complement(1463916..1466120) Lactobacillus acidophilus NCFM 3251213 YP_194330.1 CDS licT NC_006814.3 1466113 1466967 R transcriptional antiterminator LicT; beta-glucoside transcriptional antiterminator complement(1466113..1466967) Lactobacillus acidophilus NCFM 3251413 YP_194331.1 CDS LBA1480 NC_006814.3 1467158 1468438 R beta-glucosidase complement(1467158..1468438) Lactobacillus acidophilus NCFM 3251474 YP_194332.1 CDS rbsB NC_006814.3 1468571 1469557 R RbsB; D-ribose-binding protein complement(1468571..1469557) Lactobacillus acidophilus NCFM 3251391 YP_194333.1 CDS rbsC NC_006814.3 1469587 1470444 R RbsC; ribose ABC transporter complement(1469587..1470444) Lactobacillus acidophilus NCFM 3251479 YP_194334.1 CDS rbsA NC_006814.3 1470552 1472030 R RbsA; ribose ABC transporter ATP binding protein complement(1470552..1472030) Lactobacillus acidophilus NCFM 3251305 YP_194335.1 CDS rbsD NC_006814.3 1472046 1472441 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(1472046..1472441) Lactobacillus acidophilus NCFM 3251184 YP_194336.1 CDS rbsK NC_006814.3 1472443 1473369 R RbsK; ribokinase complement(1472443..1473369) Lactobacillus acidophilus NCFM 3251205 YP_194337.1 CDS LBA1486 NC_006814.3 1473607 1475052 R similar to hypothetical protein; L-fucose isomerase complement(1473607..1475052) Lactobacillus acidophilus NCFM 3251488 YP_194338.1 CDS LBA1487 NC_006814.3 1475249 1476406 R transposase, is605-tnpb complement(1475249..1476406) Lactobacillus acidophilus NCFM 3251481 YP_194339.1 CDS rbsR NC_006814.3 1476678 1477691 R RbsR; ribose operon repressor complement(1476678..1477691) Lactobacillus acidophilus NCFM 3251503 YP_194340.1 CDS LBA1489 NC_006814.3 1477821 1478654 D similar to transketolase; transketolase 1477821..1478654 Lactobacillus acidophilus NCFM 3251204 YP_194341.1 CDS LBA1490 NC_006814.3 1478647 1479588 D similar to transketolase; transketolase 1478647..1479588 Lactobacillus acidophilus NCFM 3251499 YP_194342.1 CDS glpK NC_006814.3 1479603 1481054 D GlpK; glycerol kinase 1479603..1481054 Lactobacillus acidophilus NCFM 3251196 YP_194343.1 CDS ackB NC_006814.3 1481085 1482293 D AckB; acetate kinase 1481085..1482293 Lactobacillus acidophilus NCFM 3251343 YP_194344.1 CDS lmrB NC_006814.3 1482352 1483761 R LmrB; drug-export protein; lincomycin-resistance protein complement(1482352..1483761) Lactobacillus acidophilus NCFM 3251393 YP_194345.1 CDS LBA1495 NC_006814.3 1483972 1484766 D bone protein protein; fibrinogen-binding protein 1483972..1484766 Lactobacillus acidophilus NCFM 3251238 YP_194346.1 CDS LBA1496 NC_006814.3 1484754 1487729 D cell surface protein precursor; fibrinogen-binding protein 1484754..1487729 Lactobacillus acidophilus NCFM 3251498 YP_194347.1 CDS LBA1497 NC_006814.3 1487831 1488841 R hypothetical protein complement(1487831..1488841) Lactobacillus acidophilus NCFM 3251206 YP_194348.1 CDS LBA1498 NC_006814.3 1488945 1489850 R ABC transporter complement(1488945..1489850) Lactobacillus acidophilus NCFM 3251210 YP_194349.1 CDS LBA1499 NC_006814.3 1490044 1490700 D potential frameshift to 1500; ABC transporter 1490044..1490700 Lactobacillus acidophilus NCFM 3251175 YP_194350.1 CDS LBA1500 NC_006814.3 1490681 1491445 D potential frameshift to 1499; ABC transporter 1490681..1491445 Lactobacillus acidophilus NCFM 3251176 YP_194351.1 CDS glnA NC_006814.3 1491498 1492835 R GlnA; COG0174 Glutamine synthetase; glutamine synthetase complement(1491498..1492835) Lactobacillus acidophilus NCFM 3251394 YP_194352.1 CDS LBA1502 NC_006814.3 1492973 1494223 R aluminum resistance protein complement(1492973..1494223) Lactobacillus acidophilus NCFM 3251484 YP_194353.1 CDS miaA NC_006814.3 1494216 1495136 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1494216..1495136) Lactobacillus acidophilus NCFM 3251419 YP_194354.1 CDS LBA1504 NC_006814.3 1495208 1495609 R COG0607 Rhodanese-related sulfurtransferase; rhodanese-related sulfurtransferase complement(1495208..1495609) Lactobacillus acidophilus NCFM 3251195 YP_194355.1 CDS LBA1505 NC_006814.3 1495668 1495886 R hypothetical protein complement(1495668..1495886) Lactobacillus acidophilus NCFM 3251417 YP_194356.1 CDS LBA1506 NC_006814.3 1495886 1496566 R hypothetical protein complement(1495886..1496566) Lactobacillus acidophilus NCFM 3251418 YP_194357.1 CDS LBA1507 NC_006814.3 1496601 1497164 R COG0212 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(1496601..1497164) Lactobacillus acidophilus NCFM 3251543 YP_194358.1 CDS rpmG NC_006814.3 1497218 1497367 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1497218..1497367) Lactobacillus acidophilus NCFM 3251468 YP_194359.1 CDS LBA1509 NC_006814.3 1497444 1499552 R penicillin-binding protein complement(1497444..1499552) Lactobacillus acidophilus NCFM 3251216 YP_194360.1 CDS LBA1510 NC_006814.3 1499643 1502222 D ABC transporter permease 1499643..1502222 Lactobacillus acidophilus NCFM 3251467 YP_194361.1 CDS LBA1511 NC_006814.3 1502338 1503261 D COG2971 Predicted N-acetylglucosamine kinase; N-acetylglucosamine kinase 1502338..1503261 Lactobacillus acidophilus NCFM 3251313 YP_194362.1 CDS LBA1512 NC_006814.3 1503341 1508224 R cell envelope-associated protein PrtR; PrtP complement(1503341..1508224) Lactobacillus acidophilus NCFM 3251212 YP_194363.1 CDS LBA1513 NC_006814.3 1508687 1509013 R potential frameshift to 1514; COG4292 Predicted membrane protein; low temperature requirement A protein complement(1508687..1509013) Lactobacillus acidophilus NCFM 3251211 YP_194364.1 CDS LBA1514 NC_006814.3 1509236 1509373 R potential frameshift to 1513; COG4292 Predicted membrane protein; low temperature requirement A protein complement(1509236..1509373) Lactobacillus acidophilus NCFM 3251208 YP_194365.1 CDS pepT NC_006814.3 1509394 1510677 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(1509394..1510677) Lactobacillus acidophilus NCFM 3251209 YP_194366.1 CDS LBA1516 NC_006814.3 1510792 1511706 R COG0039 Malate-lactate dehydrogenases; L-LDH complement(1510792..1511706) Lactobacillus acidophilus NCFM 3251342 YP_194367.1 CDS greA NC_006814.3 1511767 1512243 R GreA; transcriptional elongation factor complement(1511767..1512243) Lactobacillus acidophilus NCFM 3251472 YP_194368.1 CDS pheT NC_006814.3 1512319 1514733 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1512319..1514733) Lactobacillus acidophilus NCFM 3251477 YP_194369.1 CDS pheS NC_006814.3 1514737 1515786 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1514737..1515786) Lactobacillus acidophilus NCFM 3251492 YP_194370.1 CDS LBA1520 NC_006814.3 1516069 1516419 R COG1733 Predicted transcriptional regulators; transcriptional regulator complement(1516069..1516419) Lactobacillus acidophilus NCFM 3251476 YP_194371.1 CDS LBA1521 NC_006814.3 1516522 1517289 R COG0566 rRNA methylases; rRNA methylase complement(1516522..1517289) Lactobacillus acidophilus NCFM 3251501 YP_194372.1 CDS acyP NC_006814.3 1517415 1517687 D AcyP; COG1254 Acylphosphatases; acylphosphatase 1517415..1517687 Lactobacillus acidophilus NCFM 3251541 YP_194373.1 CDS LBA1523 NC_006814.3 1517729 1518697 D SpoIIIJ; family protein 1517729..1518697 Lactobacillus acidophilus NCFM 3251414 YP_194374.1 CDS lisK NC_006814.3 1518733 1520310 R two-component sensor histidine kinase complement(1518733..1520310) Lactobacillus acidophilus NCFM 3251506 YP_194375.1 CDS lisR NC_006814.3 1520288 1521004 R COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component system regulator complement(1520288..1521004) Lactobacillus acidophilus NCFM 3251505 YP_194376.1 CDS LBA1526 NC_006814.3 1521168 1521716 R hypothetical protein complement(1521168..1521716) Lactobacillus acidophilus NCFM 3251473 YP_194377.1 CDS LBA1527 NC_006814.3 1521718 1522869 R COG1323 Predicted nucleotidyltransferase; hypothetical protein complement(1521718..1522869) Lactobacillus acidophilus NCFM 3251497 YP_194378.1 CDS LBA1528 NC_006814.3 1522876 1523223 R hypothetical protein complement(1522876..1523223) Lactobacillus acidophilus NCFM 3251179 YP_194379.1 CDS LBA1529 NC_006814.3 1523238 1523837 R hypothetical protein complement(1523238..1523837) Lactobacillus acidophilus NCFM 3251178 YP_194380.1 CDS nadD NC_006814.3 1523818 1524474 R NadD; nicotinate-nucleotide adenyltransferase complement(1523818..1524474) Lactobacillus acidophilus NCFM 3251401 YP_194381.1 CDS LBA1531 NC_006814.3 1524485 1525594 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1524485..1525594) Lactobacillus acidophilus NCFM 3251344 YP_194382.1 CDS LBA1532 NC_006814.3 1525587 1526111 R hypothetical protein complement(1525587..1526111) Lactobacillus acidophilus NCFM 3251177 YP_194385.1 CDS LBA1535 NC_006814.3 1527704 1528705 D catalyzes the formation of inosine from adenosine; adenosine deaminase 1527704..1528705 Lactobacillus acidophilus NCFM 3251237 YP_194386.1 CDS rplT NC_006814.3 1528755 1529111 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1528755..1529111) Lactobacillus acidophilus NCFM 3251516 YP_194387.1 CDS rpmI NC_006814.3 1529153 1529353 R 50S ribosomal protein L35 complement(1529153..1529353) Lactobacillus acidophilus NCFM 3251517 YP_194388.1 CDS infC NC_006814.3 1529375 1529827 R translation initiation factor IF-3; translational initiation factor IF3 complement(1529375..1529827) Lactobacillus acidophilus NCFM 3251390 YP_194389.1 CDS LBA1539 NC_006814.3 1530119 1530634 R hypothetical protein complement(1530119..1530634) Lactobacillus acidophilus NCFM 3251550 YP_194390.1 CDS LBA1541 NC_006814.3 1530776 1531201 R hypothetical protein complement(1530776..1531201) Lactobacillus acidophilus NCFM 3251551 YP_194391.1 CDS LBA1542 NC_006814.3 1531198 1531632 R hypothetical protein complement(1531198..1531632) Lactobacillus acidophilus NCFM 3251256 YP_194392.1 CDS thrS NC_006814.3 1531790 1533724 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1531790..1533724) Lactobacillus acidophilus NCFM 3251306 YP_194393.1 CDS dnaI NC_006814.3 1534005 1534913 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(1534005..1534913) Lactobacillus acidophilus NCFM 3251255 YP_194394.1 CDS dnaB NC_006814.3 1534923 1536263 R DnaB; chromosome replication initiation complement(1534923..1536263) Lactobacillus acidophilus NCFM 3251509 YP_194395.1 CDS nrdR NC_006814.3 1536266 1536733 R transcriptional regulator NrdR complement(1536266..1536733) Lactobacillus acidophilus NCFM 3251491 YP_194396.1 CDS coaE NC_006814.3 1536736 1537338 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1536736..1537338) Lactobacillus acidophilus NCFM 3251490 YP_194397.1 CDS mutM NC_006814.3 1537335 1538165 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(1537335..1538165) Lactobacillus acidophilus NCFM 3251489 YP_194398.1 CDS polA NC_006814.3 1538174 1540834 R DpoI; DNA polymerase I complement(1538174..1540834) Lactobacillus acidophilus NCFM 3251511 YP_194399.1 CDS purD NC_006814.3 1543233 1544504 R PurD; phosphoribosylamine--glycine ligase complement(1543233..1544504) Lactobacillus acidophilus NCFM 3251510 YP_194400.1 CDS purH NC_006814.3 1544517 1546058 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1544517..1546058) Lactobacillus acidophilus NCFM 3251379 YP_194401.1 CDS purN NC_006814.3 1546055 1546657 R PurN; phosphoribosyl glycinamide formyltransferase complement(1546055..1546657) Lactobacillus acidophilus NCFM 3251378 YP_194402.1 CDS purM NC_006814.3 1546667 1547704 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1546667..1547704) Lactobacillus acidophilus NCFM 3251376 YP_194403.1 CDS purL NC_006814.3 1547707 1549173 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(1547707..1549173) Lactobacillus acidophilus NCFM 3251374 YP_194404.1 CDS purL NC_006814.3 1549131 1551359 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(1549131..1551359) Lactobacillus acidophilus NCFM 3251375 YP_194405.1 CDS purQ NC_006814.3 1551356 1552027 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(1551356..1552027) Lactobacillus acidophilus NCFM 3251377 YP_194406.1 CDS purS NC_006814.3 1552024 1552278 R PurS; hypothetical protein; phosphoribosylformylglycinamidine (FGAM) synthase complement(1552024..1552278) Lactobacillus acidophilus NCFM 3251373 YP_194407.1 CDS purC NC_006814.3 1552279 1552995 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(1552279..1552995) Lactobacillus acidophilus NCFM 3251515 YP_194408.1 CDS purK NC_006814.3 1553200 1554279 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1553200..1554279) Lactobacillus acidophilus NCFM 3251372 YP_194409.1 CDS purE NC_006814.3 1554341 1554826 R PurE; phosphoribosylaminoimidazole carboxylase I; phosphoribosylaminoimidazole carboxylase complement(1554341..1554826) Lactobacillus acidophilus NCFM 3251187 YP_194410.1 CDS LBA1562 NC_006814.3 1554844 1556505 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1554844..1556505) Lactobacillus acidophilus NCFM 3251186 YP_194411.1 CDS LBA1563 NC_006814.3 1556692 1557366 R COG0716 Flavodoxins; flavodoxin complement(1556692..1557366) Lactobacillus acidophilus NCFM 3251185 YP_194412.1 CDS LBA1564 NC_006814.3 1557513 1558394 R hypothetical protein complement(1557513..1558394) Lactobacillus acidophilus NCFM 3251552 YP_194413.1 CDS LBA1565 NC_006814.3 1558412 1558720 R COG3077 DNA-damage-inducible protein J; DNA-damage-inducible protein J complement(1558412..1558720) Lactobacillus acidophilus NCFM 3251197 YP_194414.1 CDS LBA1566 NC_006814.3 1558847 1559824 R bacteriocin helveticin J complement(1558847..1559824) Lactobacillus acidophilus NCFM 3251538 YP_194415.1 CDS LBA1567 NC_006814.3 1559967 1561484 D Aminopeptidase N; aminopeptidase 1559967..1561484 Lactobacillus acidophilus NCFM 3251537 YP_194416.1 CDS LBA1568 NC_006814.3 1561505 1562566 D surface protein 1561505..1562566 Lactobacillus acidophilus NCFM 3251198 YP_194419.1 CDS LBA1571 NC_006814.3 1564186 1565520 D cation efflux protein; membrane protein 1564186..1565520 Lactobacillus acidophilus NCFM 3251202 YP_194420.1 CDS LBA1572 NC_006814.3 1565616 1566488 R arginase complement(1565616..1566488) Lactobacillus acidophilus NCFM 3251201 YP_194421.1 CDS LBA1573 NC_006814.3 1566514 1567152 R COG2364 Predicted membrane protein; hypothetical protein complement(1566514..1567152) Lactobacillus acidophilus NCFM 3251429 YP_194422.1 CDS bglH NC_006814.3 1567115 1568557 R BglH; similar to phospho-beta-glucosidase; beta-glucosidase complement(1567115..1568557) Lactobacillus acidophilus NCFM 3251428 YP_194423.1 CDS LBA1575 NC_006814.3 1568559 1570241 R potential frameshift to 1576; beta-glucoside-specific enzyme II complement(1568559..1570241) Lactobacillus acidophilus NCFM 3251427 YP_194424.1 CDS LBA1576 NC_006814.3 1570231 1570434 R potential frameshift to 1575; phosphotransferase system (PTS) beta-glucoside-specific enzyme; beta-glucoside-specific enzyme II complement(1570231..1570434) Lactobacillus acidophilus NCFM 3251426 YP_194425.1 CDS LBA1577 NC_006814.3 1570615 1571448 R transcriptional regulator complement(1570615..1571448) Lactobacillus acidophilus NCFM 3251522 YP_194426.1 CDS LBA1578 NC_006814.3 1571570 1573654 R integral membrane protein; serine protease complement(1571570..1573654) Lactobacillus acidophilus NCFM 3251521 YP_194427.1 CDS murC NC_006814.3 1573756 1575069 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1573756..1575069) Lactobacillus acidophilus NCFM 3251519 YP_194428.1 CDS pheT NC_006814.3 1575171 1575818 R PheT; COG0073 EMAP domain; phenylalanyl-tRNA synthetase subunit beta complement(1575171..1575818) Lactobacillus acidophilus NCFM 3251520 YP_194429.1 CDS LBA1581 NC_006814.3 1575838 1576158 R thioredoxin complement(1575838..1576158) Lactobacillus acidophilus NCFM 3251518 YP_194430.1 CDS trmB NC_006814.3 1576224 1576880 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1576224..1576880) Lactobacillus acidophilus NCFM 3251544 YP_194431.1 CDS LBA1584 NC_006814.3 1576890 1578101 R ABC transporter permease complement(1576890..1578101) Lactobacillus acidophilus NCFM 3251523 YP_194432.1 CDS LBA1585 NC_006814.3 1578088 1578831 R ABC transporter ATP-binding protein complement(1578088..1578831) Lactobacillus acidophilus NCFM 3251524 YP_194433.1 CDS LBA1586 NC_006814.3 1578925 1579356 D histidine triad HIT family protein 1578925..1579356 Lactobacillus acidophilus NCFM 3251549 YP_194434.1 CDS LBA1587 NC_006814.3 1579368 1579703 D hypothetical protein FLJ25124; tropomyosin 1579368..1579703 Lactobacillus acidophilus NCFM 3251548 YP_194435.1 CDS prsA NC_006814.3 1579821 1580723 D cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase 1579821..1580723 Lactobacillus acidophilus NCFM 3251227 YP_194436.1 CDS LBA1589 NC_006814.3 1580793 1581770 R COG3481 Predicted family hydrolase; CMP-binding factor complement(1580793..1581770) Lactobacillus acidophilus NCFM 3251225 YP_194437.1 CDS LBA1590 NC_006814.3 1581763 1584261 R COG4717 Uncharacterized conserved protein; hypothetical protein complement(1581763..1584261) Lactobacillus acidophilus NCFM 3251226 YP_194438.1 CDS LBA1591 NC_006814.3 1584242 1585453 R COG0420 DNA repair exonuclease; phosphoesterase complement(1584242..1585453) Lactobacillus acidophilus NCFM 3251229 YP_194439.1 CDS LBA1592 NC_006814.3 1585462 1585812 R COG3679 Uncharacterized conserved protein; hypothetical protein complement(1585462..1585812) Lactobacillus acidophilus NCFM 3251230 YP_194440.1 CDS pbpF NC_006814.3 1585828 1587885 R penicillin-binding protein complement(1585828..1587885) Lactobacillus acidophilus NCFM 3251307 YP_194441.1 CDS LBA1594 NC_006814.3 1587975 1588820 D ribosomal large subunit pseudouridine synthase 1587975..1588820 Lactobacillus acidophilus NCFM 3251311 YP_194442.1 CDS glpF NC_006814.3 1588954 1589706 D GlpF; glycerol uptake facilitator protein 1588954..1589706 Lactobacillus acidophilus NCFM 3251310 YP_194443.1 CDS LBA1597 NC_006814.3 1589864 1590544 D hypothetical protein 1589864..1590544 Lactobacillus acidophilus NCFM 3251219 YP_194444.1 CDS LBA1598 NC_006814.3 1590585 1591607 R L-lactate dehydrogenase, cytochrome-type (lldD); glycolate oxidase complement(1590585..1591607) Lactobacillus acidophilus NCFM 3251312 YP_194445.1 CDS fbaA NC_006814.3 1591738 1592649 R COG0191 Fructose-tagatose bisphosphate aldolase; fructose-bisphosphate aldolase complement(1591738..1592649) Lactobacillus acidophilus NCFM 3251224 YP_194446.1 CDS argS NC_006814.3 1592758 1594443 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1592758..1594443) Lactobacillus acidophilus NCFM 3251223 YP_194447.1 CDS LBA1601 NC_006814.3 1594716 1595405 R cell surface protein complement(1594716..1595405) Lactobacillus acidophilus NCFM 3251452 YP_194448.1 CDS LBA1602 NC_006814.3 1595505 1596353 R COG0063 Predicted sugar kinase; P-loop ATPase superfamily sugar kinase complement(1595505..1596353) Lactobacillus acidophilus NCFM 3251455 YP_194449.1 CDS vanY NC_006814.3 1596356 1597654 R serine-type D-Ala-D-Ala carboxypeptidase; d-alanyl-d-alanine carboxypeptidase complement(1596356..1597654) Lactobacillus acidophilus NCFM 3251454 YP_194450.1 CDS LBA1604 NC_006814.3 1597914 1598243 D hypothetical protein 1597914..1598243 Lactobacillus acidophilus NCFM 3251193 YP_194451.1 CDS pbpX NC_006814.3 1598295 1599326 R penicillin-binding protein complement(1598295..1599326) Lactobacillus acidophilus NCFM 3251192 YP_194452.1 CDS LBA1606 NC_006814.3 1599383 1599733 R integral membrane protein; hypothetical protein complement(1599383..1599733) Lactobacillus acidophilus NCFM 3251194 YP_194453.1 CDS LBA1607 NC_006814.3 1599787 1601076 R phosphatidylserine decarboxylase complement(1599787..1601076) Lactobacillus acidophilus NCFM 3251347 YP_194454.1 CDS LBA1608 NC_006814.3 1601137 1601394 R hypothetical protein complement(1601137..1601394) Lactobacillus acidophilus NCFM 3251348 YP_194455.1 CDS LBA1609 NC_006814.3 1601504 1603435 R mucus binding protein complement(1601504..1603435) Lactobacillus acidophilus NCFM 3251402 YP_194456.1 CDS LBA1610 NC_006814.3 1603630 1604043 R 4-carboxymuconolactone decarboxylase; hypothetical protein complement(1603630..1604043) Lactobacillus acidophilus NCFM 3251272 YP_194457.1 CDS fmtB NC_006814.3 1604586 1612205 R FmtB; FmtB protein; surface protein complement(1604586..1612205) Lactobacillus acidophilus NCFM 3251268 YP_194458.1 CDS LBA1612 NC_006814.3 1612418 1615138 R fibrinogen-binding protein complement(1612418..1615138) Lactobacillus acidophilus NCFM 3251269 YP_194459.1 CDS LBA1613 NC_006814.3 1615464 1615691 R hypothetical protein complement(1615464..1615691) Lactobacillus acidophilus NCFM 3251271 YP_194460.1 CDS LBA1614 NC_006814.3 1615692 1616108 R transcriptional regulator complement(1615692..1616108) Lactobacillus acidophilus NCFM 3251404 YP_194461.1 CDS LBA1616 NC_006814.3 1616846 1618492 R polysaccharide transporter complement(1616846..1618492) Lactobacillus acidophilus NCFM 3251403 YP_194462.1 CDS leuS NC_006814.3 1618587 1621001 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1618587..1621001) Lactobacillus acidophilus NCFM 3251380 YP_194463.1 CDS LBA1618 NC_006814.3 1621292 1621951 D COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 1621292..1621951 Lactobacillus acidophilus NCFM 3251382 YP_194464.1 CDS LBA1619 NC_006814.3 1621989 1622489 R potential frameshift to 1620; oxidoreductase, pyridine nucleotide-disulfide family; NADH dehydrogenase complement(1621989..1622489) Lactobacillus acidophilus NCFM 3251381 YP_194465.1 CDS LBA1620 NC_006814.3 1622542 1623195 R potential frameshift to 1619; NADH dehydrogenase complement(1622542..1623195) Lactobacillus acidophilus NCFM 3251330 YP_194466.1 CDS LBA1621 NC_006814.3 1623770 1625227 R multidrug transporter complement(1623770..1625227) Lactobacillus acidophilus NCFM 3251384 YP_194467.1 CDS metK NC_006814.3 1625250 1626449 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1625250..1626449) Lactobacillus acidophilus NCFM 3251331 YP_194468.1 CDS LBA1623 NC_006814.3 1627192 1627344 R potential frameshift to 1624; transporter complement(1627192..1627344) Lactobacillus acidophilus NCFM 3251281 YP_194469.1 CDS LBA1624 NC_006814.3 1627314 1627451 R potential frameshift to 1623; transporter complement(1627314..1627451) Lactobacillus acidophilus NCFM 3251280 YP_194470.1 CDS LBA1626 NC_006814.3 1634900 1636207 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(1634900..1636207) Lactobacillus acidophilus NCFM 3251289 YP_194471.1 CDS LBA1627 NC_006814.3 1636434 1636985 R ribosomal-protein-alanine N-acetyltransferase complement(1636434..1636985) Lactobacillus acidophilus NCFM 3251290 YP_194472.1 CDS LBA1628 NC_006814.3 1636985 1637593 R COG0398 Uncharacterized conserved protein; hypothetical protein complement(1636985..1637593) Lactobacillus acidophilus NCFM 3251458 YP_194473.1 CDS LBA1629 NC_006814.3 1637755 1638549 D COG0657 Esterase-lipase; esterase 1637755..1638549 Lactobacillus acidophilus NCFM 3251463 YP_194474.1 CDS plcR NC_006814.3 1638552 1639409 D PlcR; hypothetical protein; regulator 1638552..1639409 Lactobacillus acidophilus NCFM 3251461 YP_194475.1 CDS LBA1631 NC_006814.3 1639447 1639950 R purine trans deoxyribosylase; deoxyribosyltransferase complement(1639447..1639950) Lactobacillus acidophilus NCFM 3251462 YP_194476.1 CDS ssdh NC_006814.3 1640119 1641501 D SsdH; COG1012 NAD-dependent aldehyde dehydrogenases; NAD-dependent aldehyde dehydrogenase 1640119..1641501 Lactobacillus acidophilus NCFM 3251449 YP_194477.1 CDS LBA1633 NC_006814.3 1641635 1646614 R surface protein complement(1641635..1646614) Lactobacillus acidophilus NCFM 3251448 YP_194478.1 CDS LBA1634 NC_006814.3 1647109 1652883 R Rlp; surface protein complement(1647109..1652883) Lactobacillus acidophilus NCFM 3251304 YP_194479.1 CDS LBA1636 NC_006814.3 1653262 1654305 R hypothetical protein complement(1653262..1654305) Lactobacillus acidophilus NCFM 3251302 YP_194480.1 CDS LBA1637 NC_006814.3 1654420 1658133 R membrane protein complement(1654420..1658133) Lactobacillus acidophilus NCFM 3251303 YP_194481.1 CDS tetR NC_006814.3 1658149 1658712 R COG1309 transcriptional regulator, TetR family; transcriptional regulator complement(1658149..1658712) Lactobacillus acidophilus NCFM 3251451 YP_194482.1 CDS LBA1639 NC_006814.3 1658853 1659809 R COG2367 Beta-lactamase class A; beta-lactamase complement(1658853..1659809) Lactobacillus acidophilus NCFM 3251450 YP_194483.1 CDS corA NC_006814.3 1659826 1660785 R CorA family cationic transporter complement(1659826..1660785) Lactobacillus acidophilus NCFM 3251337 YP_194484.1 CDS LBA1641 NC_006814.3 1660864 1662165 R glycerol-3-phosphate ABC transporter complement(1660864..1662165) Lactobacillus acidophilus NCFM 3251388 YP_194485.1 CDS LBA1642 NC_006814.3 1662219 1663514 R hypothetical protein complement(1662219..1663514) Lactobacillus acidophilus NCFM 3251387 YP_194486.1 CDS LBA1643 NC_006814.3 1663498 1664322 R sugar ABC transporter complement(1663498..1664322) Lactobacillus acidophilus NCFM 3251389 YP_194487.1 CDS LBA1644 NC_006814.3 1664354 1665193 R sugar ABC transporter permease complement(1664354..1665193) Lactobacillus acidophilus NCFM 3251341 YP_194488.1 CDS LBA1645 NC_006814.3 1665193 1666278 R multiple sugar-binding ABC-transporter ATPase complement(1665193..1666278) Lactobacillus acidophilus NCFM 3251338 YP_194489.1 CDS LBA1646 NC_006814.3 1666539 1667966 R COG4690 Dipeptidase; dipeptidase complement(1666539..1667966) Lactobacillus acidophilus NCFM 3251339 YP_194490.1 CDS LBA1647 NC_006814.3 1668009 1668866 R DNA nuclease complement(1668009..1668866) Lactobacillus acidophilus NCFM 3251340 YP_194491.1 CDS LBA1648 NC_006814.3 1668876 1669832 R DNA polymerase III complement(1668876..1669832) Lactobacillus acidophilus NCFM 3251572 YP_194492.1 CDS LBA1649 NC_006814.3 1669840 1670640 R hypothetical protein complement(1669840..1670640) Lactobacillus acidophilus NCFM 3251571 YP_194493.1 CDS LBA1650 NC_006814.3 1670659 1671297 R COG2323 Predicted membrane protein; hypothetical protein complement(1670659..1671297) Lactobacillus acidophilus NCFM 3251570 YP_194494.1 CDS LBA1651 NC_006814.3 1671300 1671749 R hypothetical protein complement(1671300..1671749) Lactobacillus acidophilus NCFM 3251531 YP_194495.1 CDS LBA1652 NC_006814.3 1671822 1675346 R cell surface protein precursor; mucus binding protein precursor Mub complement(1671822..1675346) Lactobacillus acidophilus NCFM 3251534 YP_194496.1 CDS LBA1653 NC_006814.3 1675689 1676426 R COG3201 Nicotinamide mononucleotide transporter; nicotinamide mononucleotide complement(1675689..1676426) Lactobacillus acidophilus NCFM 3251409 YP_194497.1 CDS pspC NC_006814.3 1676702 1678759 D surface protein PspC; surface protein 1676702..1678759 Lactobacillus acidophilus NCFM 3251408 YP_194498.1 CDS LBA1655 NC_006814.3 1678847 1679137 D RecA protein (Recombinase A); hypothetical protein 1678847..1679137 Lactobacillus acidophilus NCFM 3251535 YP_194499.1 CDS LBA1656 NC_006814.3 1679199 1679942 R COG2461 Uncharacterized conserved protein; hypothetical protein complement(1679199..1679942) Lactobacillus acidophilus NCFM 3251536 YP_194500.1 CDS LBA1657 NC_006814.3 1680127 1681731 R ABC transporter complement(1680127..1681731) Lactobacillus acidophilus NCFM 3251411 YP_194501.1 CDS LBA1658 NC_006814.3 1681849 1682766 D prolinase; prolyl aminopeptidase 1681849..1682766 Lactobacillus acidophilus NCFM 3251410 YP_194502.1 CDS LBA1659 NC_006814.3 1682825 1683526 D response regulator 1682825..1683526 Lactobacillus acidophilus NCFM 3251249 YP_194503.1 CDS LBA1660 NC_006814.3 1683528 1684853 D sensor protein 1683528..1684853 Lactobacillus acidophilus NCFM 3251584 YP_194504.1 CDS LBA1661 NC_006814.3 1684971 1685513 D COG3212 Predicted membrane protein; hypothetical protein 1684971..1685513 Lactobacillus acidophilus NCFM 3251583 YP_194505.1 CDS LBA1662 NC_006814.3 1685532 1686140 D COG3212 Predicted membrane protein; hypothetical protein 1685532..1686140 Lactobacillus acidophilus NCFM 3251251 YP_194506.1 CDS marR NC_006814.3 1686227 1686682 D transcriptional regulator 1686227..1686682 Lactobacillus acidophilus NCFM 3251250 YP_194507.1 CDS LBA1664 NC_006814.3 1686682 1687197 D acetyltransferase 1686682..1687197 Lactobacillus acidophilus NCFM 3251422 YP_194508.1 CDS oppA NC_006814.3 1687261 1688901 R OppA; oligopeptide ABC transporter substrate binding protein complement(1687261..1688901) Lactobacillus acidophilus NCFM 3251421 YP_194509.1 CDS LBA1666 NC_006814.3 1689221 1689583 D COG3759 Predicted membrane protein; hypothetical protein 1689221..1689583 Lactobacillus acidophilus NCFM 3251420 YP_194510.1 CDS LBA1667 NC_006814.3 1689708 1690289 D hypothetical protein 1689708..1690289 Lactobacillus acidophilus NCFM 3251397 YP_194511.1 CDS LBA1668 NC_006814.3 1690349 1690924 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1690349..1690924) Lactobacillus acidophilus NCFM 3251395 YP_194512.1 CDS coaA NC_006814.3 1691048 1691962 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(1691048..1691962) Lactobacillus acidophilus NCFM 3251423 YP_194513.1 CDS LBA1670 NC_006814.3 1692019 1692579 D arylesterase 1692019..1692579 Lactobacillus acidophilus NCFM 3251396 YP_194514.1 CDS LBA1671 NC_006814.3 1692576 1693028 R acetyltransferase complement(1692576..1693028) Lactobacillus acidophilus NCFM 3251233 YP_194515.1 CDS LBA1672 NC_006814.3 1693031 1693849 R amino acid ABC transporter complement(1693031..1693849) Lactobacillus acidophilus NCFM 3251232 YP_194516.1 CDS glnQ NC_006814.3 1693853 1694473 R GlnQ; glutamine ABC transporter complement(1693853..1694473) Lactobacillus acidophilus NCFM 3251399 YP_194517.1 CDS LBA1674 NC_006814.3 1694487 1695134 R amino acid ABC transporter permease complement(1694487..1695134) Lactobacillus acidophilus NCFM 3251231 YP_194518.1 CDS LBA1675 NC_006814.3 1695566 1695772 R hypothetical protein complement(1695566..1695772) Lactobacillus acidophilus NCFM 3251236 YP_194519.1 CDS LBA1676 NC_006814.3 1695808 1697871 R ATP-dependent helicase complement(1695808..1697871) Lactobacillus acidophilus NCFM 3251234 YP_194520.1 CDS LBA1677 NC_006814.3 1698026 1698709 D hypothetical protein 1698026..1698709 Lactobacillus acidophilus NCFM 3251235 YP_194521.1 CDS LBA1678 NC_006814.3 1698772 1699422 D COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 1698772..1699422 Lactobacillus acidophilus NCFM 3251245 YP_194522.1 CDS LBA1679 NC_006814.3 1699455 1701257 R ABC transporter permease complement(1699455..1701257) Lactobacillus acidophilus NCFM 3251244 YP_194523.1 CDS LBA1680 NC_006814.3 1701268 1702017 R ABC transporter ATP-binding protein complement(1701268..1702017) Lactobacillus acidophilus NCFM 3251243 YP_194524.1 CDS LBA1681 NC_006814.3 1702166 1703437 R hypothetical protein complement(1702166..1703437) Lactobacillus acidophilus NCFM 3251242 YP_194525.1 CDS LBA1682 NC_006814.3 1703533 1704219 D similar to ORF1 TT-virus; hypothetical protein 1703533..1704219 Lactobacillus acidophilus NCFM 3251355 YP_194526.1 CDS pacL NC_006814.3 1704232 1706871 R Calcium-transporting ATPase; cation-transporting ATPase complement(1704232..1706871) Lactobacillus acidophilus NCFM 3251351 YP_194527.1 CDS LBA1684 NC_006814.3 1707045 1707437 R COG2893 Phosphotransferase system, mannose-fructose-specific component IIA; PTS system transporter subunit IIA complement(1707045..1707437) Lactobacillus acidophilus NCFM 3251576 YP_194528.1 CDS LBA1685 NC_006814.3 1707586 1707885 R hypothetical protein complement(1707586..1707885) Lactobacillus acidophilus NCFM 3251575 YP_194529.1 CDS LBA1686 NC_006814.3 1707963 1708100 R hypothetical protein complement(1707963..1708100) Lactobacillus acidophilus NCFM 3251574 YP_194530.1 CDS ansA NC_006814.3 1708198 1709190 R l-asparaginase complement(1708198..1709190) Lactobacillus acidophilus NCFM 3251354 YP_194531.1 CDS rpiR NC_006814.3 1709200 1709982 R family; RpiR; similar to hypothetical protein; transcriptional regulator complement(1709200..1709982) Lactobacillus acidophilus NCFM 3251356 YP_194532.1 CDS malH NC_006814.3 1710079 1711416 R Maltose-6'-phosphate glucosidase (6-phospho-alpha-D-glucosidase); maltose-6'-phosphate glucosidase complement(1710079..1711416) Lactobacillus acidophilus NCFM 3251573 YP_194533.1 CDS LBA1690 NC_006814.3 1712129 1712971 D surface exclusion protein; hypothetical protein 1712129..1712971 Lactobacillus acidophilus NCFM 3251578 YP_194534.1 CDS LBA1691 NC_006814.3 1713450 1713950 D transcriptional regulator 1713450..1713950 Lactobacillus acidophilus NCFM 3251577 YP_194535.1 CDS LBA1692 NC_006814.3 1713978 1714541 R GNAT family; acetyltransferase complement(1713978..1714541) Lactobacillus acidophilus NCFM 3251367 YP_194536.1 CDS LBA1693 NC_006814.3 1714691 1714810 R hypothetical protein complement(1714691..1714810) Lactobacillus acidophilus NCFM 3251366 YP_194537.1 CDS LBA1694 NC_006814.3 1715173 1715301 R hypothetical protein complement(1715173..1715301) Lactobacillus acidophilus NCFM 3251369 YP_194538.1 CDS LBA1695 NC_006814.3 1715785 1717383 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1715785..1717383 Lactobacillus acidophilus NCFM 3251368 YP_194539.1 CDS LBA1696 NC_006814.3 1717399 1719057 D aspartate alanine antiporter 1717399..1719057 Lactobacillus acidophilus NCFM 3251434 YP_194540.1 CDS LBA1697 NC_006814.3 1719195 1720205 R hypothetical protein complement(1719195..1720205) Lactobacillus acidophilus NCFM 3251433 YP_194541.1 CDS LBA1698 NC_006814.3 1720218 1721282 R protein; prophage related protein complement(1720218..1721282) Lactobacillus acidophilus NCFM 3251436 YP_194542.1 CDS exoA NC_006814.3 1721383 1722144 R COG0708 Exonuclease III; exodeoxyribonuclease complement(1721383..1722144) Lactobacillus acidophilus NCFM 3251435 YP_194543.1 CDS LBA1700 NC_006814.3 1722309 1723388 R AraC; transcriptional regulator -type complement(1722309..1723388) Lactobacillus acidophilus NCFM 3251529 YP_194544.1 CDS LBA1701 NC_006814.3 1723898 1724914 R transcriptional regulator, AraC family; melibiose operon regulatory protein complement(1723898..1724914) Lactobacillus acidophilus NCFM 3251527 YP_194545.1 CDS rpiR NC_006814.3 1726886 1727740 R family; RpiR; transcriptional regulator complement(1726886..1727740) Lactobacillus acidophilus NCFM 3251525 YP_194546.1 CDS LBA1703 NC_006814.3 1727750 1728811 R hypothetical protein complement(1727750..1728811) Lactobacillus acidophilus NCFM 3251526 YP_194547.1 CDS murQ NC_006814.3 1728870 1729766 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(1728870..1729766) Lactobacillus acidophilus NCFM 3251528 YP_194548.1 CDS LBA1705 NC_006814.3 1729778 1731769 R sucrose PTS, EIIBC; PTS system transporter subunit IIBC complement(1729778..1731769) Lactobacillus acidophilus NCFM 3251530 YP_194549.1 CDS LBA1706 NC_006814.3 1732095 1733576 R COG2723 Beta-glucosidase-6-phospho-beta-glucosidase -beta-galactosidase; 6-phospho-beta-glucosidase complement(1732095..1733576) Lactobacillus acidophilus NCFM 3251293 YP_194550.1 CDS LBA1707 NC_006814.3 1733589 1735466 R beta-glucoside permease complement(1733589..1735466) Lactobacillus acidophilus NCFM 3251295 YP_194551.1 CDS licT NC_006814.3 1735463 1736317 R COG3711 transcriptional antiterminator; transcriptional antiterminator complement(1735463..1736317) Lactobacillus acidophilus NCFM 3251294 YP_194552.1 CDS LBA1709 NC_006814.3 1736469 1740095 R mucus binding protein precursor Mub complement(1736469..1740095) Lactobacillus acidophilus NCFM 3251297 YP_194553.1 CDS amyX NC_006814.3 1740378 1743935 R pullulanase; thermostable pullulanase complement(1740378..1743935) Lactobacillus acidophilus NCFM 3251299 YP_194554.1 CDS LBA1711 NC_006814.3 1744176 1744685 R sulfotransferase; hypothetical protein complement(1744176..1744685) Lactobacillus acidophilus NCFM 3251554 YP_194555.1 CDS LBA1712 NC_006814.3 1744723 1745667 R pneumococcal surface protein A; hypothetical protein complement(1744723..1745667) Lactobacillus acidophilus NCFM 3251555 YP_194556.1 CDS LBA1713 NC_006814.3 1745938 1747656 R hypothetical protein complement(1745938..1747656) Lactobacillus acidophilus NCFM 3251557 YP_194557.1 CDS LBA1714 NC_006814.3 1747869 1748459 R hypothetical protein complement(1747869..1748459) Lactobacillus acidophilus NCFM 3251558 YP_194558.1 CDS LBA1715 NC_006814.3 1748452 1748634 R hypothetical protein complement(1748452..1748634) Lactobacillus acidophilus NCFM 3251559 YP_194559.1 CDS LBA1716 NC_006814.3 1750130 1751326 R GLP_178_26121_9007; hypothetical protein complement(1750130..1751326) Lactobacillus acidophilus NCFM 3251325 YP_194560.1 CDS agrC NC_006814.3 1752104 1753225 R mutant sensor protein complement(1752104..1753225) Lactobacillus acidophilus NCFM 3251326 YP_194561.1 CDS LBA1718 NC_006814.3 1753493 1754275 R hypothetical protein complement(1753493..1754275) Lactobacillus acidophilus NCFM 3251320 YP_194562.1 CDS LBA1719 NC_006814.3 1754392 1755276 R COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase complement(1754392..1755276) Lactobacillus acidophilus NCFM 3251328 YP_194563.1 CDS LBA1720 NC_006814.3 1755431 1756573 D COG0381 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetyl glucosamine-2-epimerase 1755431..1756573 Lactobacillus acidophilus NCFM 3251323 YP_194564.1 CDS LBA1721 NC_006814.3 1756648 1757007 R potential frameshift to 1722; transposase complement(1756648..1757007) Lactobacillus acidophilus NCFM 3251322 YP_194565.1 CDS LBA1722 NC_006814.3 1756970 1757710 R potential frameshift to 1721; transposase complement(1756970..1757710) Lactobacillus acidophilus NCFM 3251324 YP_194566.1 CDS LBA1723 NC_006814.3 1757980 1759206 D transposase 1757980..1759206 Lactobacillus acidophilus NCFM 3251360 YP_194567.1 CDS epsI NC_006814.3 1759462 1760895 R oligosaccharide repeat-containing polymerase complement(1759462..1760895) Lactobacillus acidophilus NCFM 3251361 YP_194568.1 CDS epsJ NC_006814.3 1760901 1761413 R COG0562 UDP-galactopyranose mutase; UDP-galactopyranose mutase complement(1760901..1761413) Lactobacillus acidophilus NCFM 3251363 YP_194569.1 CDS LBA1726 NC_006814.3 1761612 1762013 R potential frameshift to 1725; UDP-galactopyranose mutase; udpgalactopyranose mutase complement(1761612..1762013) Lactobacillus acidophilus NCFM 3251258 YP_194570.1 CDS LBA1727 NC_006814.3 1762010 1763305 R polysaccharide polymerase complement(1762010..1763305) Lactobacillus acidophilus NCFM 3251259 YP_194571.1 CDS LBA1728 NC_006814.3 1763330 1764370 R glycosyl transferase family protein complement(1763330..1764370) Lactobacillus acidophilus NCFM 3251262 YP_194572.1 CDS LBA1729 NC_006814.3 1764367 1765023 R hypothetical protein complement(1764367..1765023) Lactobacillus acidophilus NCFM 3251264 YP_194573.1 CDS LBA1730 NC_006814.3 1764992 1765513 R COG0058 Glucan phosphorylase; hypothetical protein complement(1764992..1765513) Lactobacillus acidophilus NCFM 3251265 YP_194574.1 CDS LBA1731 NC_006814.3 1765526 1766407 R COG1216 Predicted glycosyltransferases; glycosyltransferase complement(1765526..1766407) Lactobacillus acidophilus NCFM 3251274 YP_194575.1 CDS epsF NC_006814.3 1766424 1767197 R glycosyltransferase; galactosyl transferase complement(1766424..1767197) Lactobacillus acidophilus NCFM 3251273 YP_194576.1 CDS epsE NC_006814.3 1767206 1767859 R EpsE; phospho-glucosyltransferase complement(1767206..1767859) Lactobacillus acidophilus NCFM 3251275 YP_194577.1 CDS epsD NC_006814.3 1767949 1768719 R EpsD; exopolysaccharide biosynthesis protein complement(1767949..1768719) Lactobacillus acidophilus NCFM 3251277 YP_194578.1 CDS epsC NC_006814.3 1768722 1769504 R EpsC; exopolysaccharide biosynthesis protein complement(1768722..1769504) Lactobacillus acidophilus NCFM 3251279 YP_194579.1 CDS epsB NC_006814.3 1769520 1770395 R EpsB; exopolysaccharide biosynthesis protein complement(1769520..1770395) Lactobacillus acidophilus NCFM 3251442 YP_194580.1 CDS epsA NC_006814.3 1770417 1771472 R EpsA; exopolysaccharide biosynthesis protein complement(1770417..1771472) Lactobacillus acidophilus NCFM 3251440 YP_194581.1 CDS hflX NC_006814.3 1771638 1772903 D HflX; COG2262 GTPases; GTP-binding protein 1771638..1772903 Lactobacillus acidophilus NCFM 3251443 YP_194582.1 CDS LBA1739 NC_006814.3 1772919 1773929 D hypothetical protein 1772919..1773929 Lactobacillus acidophilus NCFM 3251445 YP_194583.1 CDS LBA1740 NC_006814.3 1774540 1778670 R hypothetical protein complement(1774540..1778670) Lactobacillus acidophilus NCFM 3251561 YP_194584.1 CDS LBA1741 NC_006814.3 1778856 1779755 R cell wall-associated hydrolase complement(1778856..1779755) Lactobacillus acidophilus NCFM 3251565 YP_194585.1 CDS LBA1743 NC_006814.3 1779910 1780698 R COG3942 Surface antigen; cell wall-associated hydrolase complement(1779910..1780698) Lactobacillus acidophilus NCFM 3251563 YP_194586.1 CDS LBA1744 NC_006814.3 1780996 1781550 R COG3942 Surface antigen; glycosidase complement(1780996..1781550) Lactobacillus acidophilus NCFM 3251567 YP_194587.1 CDS LBA1745 NC_006814.3 1781744 1782193 R COG0194 Guanylate kinase; guanylate kinase complement(1781744..1782193) Lactobacillus acidophilus NCFM 3251585 YP_194588.1 CDS LBA1746 NC_006814.3 1782390 1782689 D hypothetical protein 1782390..1782689 Lactobacillus acidophilus NCFM 3251587 YP_194589.1 CDS LBA1747 NC_006814.3 1782779 1784290 D hypothetical protein 1782779..1784290 Lactobacillus acidophilus NCFM 3251590 YP_194590.1 CDS LBA1748 NC_006814.3 1784323 1784943 R hypothetical protein complement(1784323..1784943) Lactobacillus acidophilus NCFM 3251593 YP_194591.1 CDS nrdI NC_006814.3 1785067 1785513 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 1785067..1785513 Lactobacillus acidophilus NCFM 3251592 YP_194592.1 CDS nrdF NC_006814.3 1785516 1786451 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1785516..1786451 Lactobacillus acidophilus NCFM 3251594 YP_194593.1 CDS LBA1751 NC_006814.3 1786486 1787019 R hypothetical protein complement(1786486..1787019) Lactobacillus acidophilus NCFM 3251597 YP_194594.1 CDS LBA1752 NC_006814.3 1787128 1787850 D hypothetical protein 1787128..1787850 Lactobacillus acidophilus NCFM 3251598 YP_194595.1 CDS LBA1753 NC_006814.3 1787856 1788173 R hypothetical protein complement(1787856..1788173) Lactobacillus acidophilus NCFM 3251601 YP_194596.1 CDS LBA1754 NC_006814.3 1788170 1788466 R hypothetical protein complement(1788170..1788466) Lactobacillus acidophilus NCFM 3251602 YP_194597.1 CDS LBA1755 NC_006814.3 1788447 1788677 R ABC transporter ATP-binding protein complement(1788447..1788677) Lactobacillus acidophilus NCFM 3251607 YP_194598.1 CDS LBA1756 NC_006814.3 1788750 1788908 R hypothetical protein complement(1788750..1788908) Lactobacillus acidophilus NCFM 3251604 YP_194599.1 CDS LBA1757 NC_006814.3 1788984 1789469 R COG3610 Uncharacterized conserved protein; hypothetical protein complement(1788984..1789469) Lactobacillus acidophilus NCFM 3251605 YP_194600.1 CDS LBA1758 NC_006814.3 1789472 1790242 R COG2966 Uncharacterized conserved protein; hypothetical protein complement(1789472..1790242) Lactobacillus acidophilus NCFM 3251606 YP_194601.1 CDS LBA1759 NC_006814.3 1790253 1791794 R ABC transporter ATPase complement(1790253..1791794) Lactobacillus acidophilus NCFM 3251608 YP_194602.1 CDS LBA1760 NC_006814.3 1791803 1792177 R hypothetical protein complement(1791803..1792177) Lactobacillus acidophilus NCFM 3251610 YP_194604.1 CDS lytR NC_006814.3 1792877 1794151 R LytR; COG1316 transcriptional regulator; transcriptional regulator complement(1792877..1794151) Lactobacillus acidophilus NCFM 3251615 YP_194605.1 CDS pepF NC_006814.3 1794320 1796116 D endopeptidase F; oligopeptidase 1794320..1796116 Lactobacillus acidophilus NCFM 3251617 YP_194606.1 CDS LBA1765 NC_006814.3 1796193 1796474 D hypothetical protein 1796193..1796474 Lactobacillus acidophilus NCFM 3251618 YP_194607.1 CDS lctP NC_006814.3 1796807 1798321 R LctP; COG1620 L-lactate permease; lactate premease complement(1796807..1798321) Lactobacillus acidophilus NCFM 3251620 YP_194608.1 CDS LBA1769 NC_006814.3 1798726 1799091 D COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase; hypothetical protein 1798726..1799091 Lactobacillus acidophilus NCFM 3251623 YP_194609.1 CDS LBA1771 NC_006814.3 1799140 1799937 R ABC transporter permease complement(1799140..1799937) Lactobacillus acidophilus NCFM 3251624 YP_194610.1 CDS LBA1772 NC_006814.3 1799934 1800581 R zinc ABC transporter ATPase complement(1799934..1800581) Lactobacillus acidophilus NCFM 3251628 YP_194611.1 CDS psaA NC_006814.3 1800619 1801515 R PsaA; ABC transporter periplasmatic component complement(1800619..1801515) Lactobacillus acidophilus NCFM 3251629 YP_194612.1 CDS LBA1774 NC_006814.3 1801745 1802023 R COG0640 Predicted transcriptional regulators; transcriptional regulator complement(1801745..1802023) Lactobacillus acidophilus NCFM 3251631 YP_194613.1 CDS LBA1775 NC_006814.3 1802166 1802603 D hypothetical protein 1802166..1802603 Lactobacillus acidophilus NCFM 3251632 YP_194614.1 CDS LBA1776 NC_006814.3 1802605 1803018 D hypothetical protein 1802605..1803018 Lactobacillus acidophilus NCFM 3251635 YP_194615.1 CDS fruA NC_006814.3 1803211 1805208 R PTS system fructose-specific transporter subunit II complement(1803211..1805208) Lactobacillus acidophilus NCFM 3251634 YP_194616.1 CDS fruK NC_006814.3 1805232 1806146 R FruK; fructose-1-phosphate kinase complement(1805232..1806146) Lactobacillus acidophilus NCFM 3251636 YP_194617.1 CDS fruR NC_006814.3 1806148 1806903 R FruR; repressor of fructose operon complement(1806148..1806903) Lactobacillus acidophilus NCFM 3251639 YP_194618.1 CDS LBA1780 NC_006814.3 1807106 1808161 R hypothetical protein complement(1807106..1808161) Lactobacillus acidophilus NCFM 3251640 YP_194619.1 CDS LBA1782 NC_006814.3 1808316 1809536 R ABC transporter permease complement(1808316..1809536) Lactobacillus acidophilus NCFM 3251641 YP_194620.1 CDS LBA1783 NC_006814.3 1809520 1810416 R ABC transporter ATP-binding protein complement(1809520..1810416) Lactobacillus acidophilus NCFM 3251644 YP_194621.1 CDS LBA1784 NC_006814.3 1810842 1810943 R hypothetical protein complement(1810842..1810943) Lactobacillus acidophilus NCFM 3251645 YP_194622.1 CDS LBA1786 NC_006814.3 1810962 1811384 R chloride channel protein; hypothetical protein complement(1810962..1811384) Lactobacillus acidophilus NCFM 3251647 YP_194623.1 CDS LBA1787 NC_006814.3 1811418 1811612 R hypothetical protein complement(1811418..1811612) Lactobacillus acidophilus NCFM 3251649 YP_194624.1 CDS LBA1788 NC_006814.3 1811745 1811954 R transcriptional regulator complement(1811745..1811954) Lactobacillus acidophilus NCFM 3251651 YP_194625.1 CDS LBA1789 NC_006814.3 1811969 1812508 R vasotocin VT1 receptor; hypothetical protein complement(1811969..1812508) Lactobacillus acidophilus NCFM 3251653 YP_194626.1 CDS LBA1790 NC_006814.3 1812513 1812695 R vacuolar sorting receptor protein homolog PV72 -cucur bit; hypothetical protein complement(1812513..1812695) Lactobacillus acidophilus NCFM 3251656 YP_194627.1 CDS LBA1791 NC_006814.3 1813284 1813478 R hypothetical protein complement(1813284..1813478) Lactobacillus acidophilus NCFM 3251657 YP_194628.1 CDS LBA1792 NC_006814.3 1813644 1813835 R assimilatory nitrate reductase (electron transfer subunit); hypothetical protein complement(1813644..1813835) Lactobacillus acidophilus NCFM 3251659 YP_194629.1 CDS LBA1793 NC_006814.3 1813836 1815152 R hypothetical protein complement(1813836..1815152) Lactobacillus acidophilus NCFM 3251661 YP_194630.1 CDS LBA1794 NC_006814.3 1815318 1815908 R gassericin K7 B accessory protein complement(1815318..1815908) Lactobacillus acidophilus NCFM 3251662 YP_194631.1 CDS plnG NC_006814.3 1815919 1818081 R PlnG; ABC transporter complement(1815919..1818081) Lactobacillus acidophilus NCFM 3251664 YP_194632.1 CDS LBA1797 NC_006814.3 1818712 1818963 R hypothetical protein complement(1818712..1818963) Lactobacillus acidophilus NCFM 3251668 YP_194633.1 CDS LBA1798 NC_006814.3 1819156 1819980 R AbpR; response regulator complement(1819156..1819980) Lactobacillus acidophilus NCFM 3251667 YP_194634.1 CDS LBA1799 NC_006814.3 1819949 1821271 R AbpK; histidine kinase complement(1819949..1821271) Lactobacillus acidophilus NCFM 3251669 YP_194635.1 CDS LBA1800 NC_006814.3 1821278 1821421 R hypothetical protein complement(1821278..1821421) Lactobacillus acidophilus NCFM 3251672 YP_194636.1 CDS LBA1801 NC_006814.3 1821476 1821592 R hypothetical protein complement(1821476..1821592) Lactobacillus acidophilus NCFM 3251674 YP_194637.1 CDS LBA1802 NC_006814.3 1821552 1821743 R hypothetical protein complement(1821552..1821743) Lactobacillus acidophilus NCFM 3251673 YP_194638.1 CDS LBA1803 NC_006814.3 1821856 1822017 R hypothetical protein complement(1821856..1822017) Lactobacillus acidophilus NCFM 3251676 YP_194639.1 CDS LBA1804 NC_006814.3 1822189 1822815 R hypothetical protein complement(1822189..1822815) Lactobacillus acidophilus NCFM 3251678 YP_194640.1 CDS LBA1805 NC_006814.3 1822871 1823047 R bHLH transcriptional factor; hypothetical protein complement(1822871..1823047) Lactobacillus acidophilus NCFM 3251682 YP_194643.1 CDS LBA1810 NC_006814.3 1824505 1825701 R hypothetical protein complement(1824505..1825701) Lactobacillus acidophilus NCFM 3251686 YP_194644.1 CDS LBA1811 NC_006814.3 1826360 1826671 R hypothetical protein complement(1826360..1826671) Lactobacillus acidophilus NCFM 3251687 YP_194645.1 CDS LBA1812 NC_006814.3 1827103 1829406 R alpha-glucosidase complement(1827103..1829406) Lactobacillus acidophilus NCFM 3251688 YP_194646.1 CDS LBA1813 NC_006814.3 1829512 1829703 R hypothetical protein complement(1829512..1829703) Lactobacillus acidophilus NCFM 3251689 YP_194647.1 CDS LBA1814 NC_006814.3 1829782 1830009 R hypothetical protein complement(1829782..1830009) Lactobacillus acidophilus NCFM 3251692 YP_194648.1 CDS LBA1815 NC_006814.3 1830083 1830406 R hypothetical protein complement(1830083..1830406) Lactobacillus acidophilus NCFM 3251693 YP_194649.1 CDS LBA1816 NC_006814.3 1830489 1830842 R hypothetical protein complement(1830489..1830842) Lactobacillus acidophilus NCFM 3251695 YP_194650.1 CDS LBA1817 NC_006814.3 1830853 1831602 R COG1794 Aspartate racemase; aspartate racemase complement(1830853..1831602) Lactobacillus acidophilus NCFM 3251694 YP_194651.1 CDS murE NC_006814.3 1831613 1833184 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1831613..1833184) Lactobacillus acidophilus NCFM 3251696 YP_194652.1 CDS LBA1819 NC_006814.3 1833240 1834385 R VanS; two-component sensor histidine kinase-like protein complement(1833240..1834385) Lactobacillus acidophilus NCFM 3251700 YP_194653.1 CDS LBA1820 NC_006814.3 1834387 1835073 R COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator complement(1834387..1835073) Lactobacillus acidophilus NCFM 3251702 YP_194654.1 CDS LBA1821 NC_006814.3 1835222 1837087 R ABC transporter ATPase complement(1835222..1837087) Lactobacillus acidophilus NCFM 3251701 YP_194655.1 CDS LBA1822 NC_006814.3 1837089 1838819 R ABC transporter ATPase complement(1837089..1838819) Lactobacillus acidophilus NCFM 3251704 YP_194656.1 CDS LBA1823 NC_006814.3 1838935 1839717 R hypothetical protein complement(1838935..1839717) Lactobacillus acidophilus NCFM 3251703 YP_194657.1 CDS ychF NC_006814.3 1839727 1840827 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1839727..1840827) Lactobacillus acidophilus NCFM 3251707 YP_194658.1 CDS LBA1825 NC_006814.3 1840884 1841147 R hypothetical protein complement(1840884..1841147) Lactobacillus acidophilus NCFM 3251705 YP_194659.1 CDS parB NC_006814.3 1841140 1842024 R COG1475 Predicted transcriptional regulators; chromosome partitioning protein complement(1841140..1842024) Lactobacillus acidophilus NCFM 3251706 YP_194660.1 CDS parA NC_006814.3 1842002 1842781 R chromosome partitioning protein complement(1842002..1842781) Lactobacillus acidophilus NCFM 3251708 YP_194661.1 CDS parB NC_006814.3 1842797 1843627 R COG1475 Predicted transcriptional regulators; chromosome partitioning protein complement(1842797..1843627) Lactobacillus acidophilus NCFM 3251709 YP_194662.1 CDS gidB NC_006814.3 1843645 1844367 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(1843645..1844367) Lactobacillus acidophilus NCFM 3251711 YP_194663.1 CDS LBA1830 NC_006814.3 1844552 1845088 D hypothetical protein 1844552..1845088 Lactobacillus acidophilus NCFM 3251714 YP_194664.1 CDS apbE NC_006814.3 1845121 1846050 R ApbE; thiamine biosynthesis lipoprotein complement(1845121..1846050) Lactobacillus acidophilus NCFM 3251715 YP_194665.1 CDS LBA1832 NC_006814.3 1846054 1846845 R COG2365 protein tyrosine-serine phosphatase; protein-tyrosine-phosphatase complement(1846054..1846845) Lactobacillus acidophilus NCFM 3251718 YP_194666.1 CDS LBA1833 NC_006814.3 1846932 1847480 R COG0431 Predicted protein; oxidoreductase complement(1846932..1847480) Lactobacillus acidophilus NCFM 3251717 YP_194667.1 CDS LBA1834 NC_006814.3 1847492 1848031 R COG0431 Predicted protein; oxidoreductase complement(1847492..1848031) Lactobacillus acidophilus NCFM 3251724 YP_194668.1 CDS LBA1835 NC_006814.3 1848184 1848807 R transcriptional regulator complement(1848184..1848807) Lactobacillus acidophilus NCFM 3251720 YP_194669.1 CDS LBA1836 NC_006814.3 1849012 1849164 R hypothetical protein complement(1849012..1849164) Lactobacillus acidophilus NCFM 3251721 YP_194670.1 CDS LBA1837 NC_006814.3 1849260 1850672 D COG4690 Dipeptidase; cytosol non-specific dipeptidase 1849260..1850672 Lactobacillus acidophilus NCFM 3251722 YP_194671.1 CDS LBA1838 NC_006814.3 1850711 1851385 R ABC transporter ATP-binding protein complement(1850711..1851385) Lactobacillus acidophilus NCFM 3251723 YP_194672.1 CDS LBA1839 NC_006814.3 1851387 1852448 R ABC transporter permease complement(1851387..1852448) Lactobacillus acidophilus NCFM 3251725 YP_194673.1 CDS LBA1840 NC_006814.3 1852449 1852976 R family; TetRAcrR; transcriptional regulator complement(1852449..1852976) Lactobacillus acidophilus NCFM 3251728 YP_194674.1 CDS LBA1841 NC_006814.3 1853095 1853694 R COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase complement(1853095..1853694) Lactobacillus acidophilus NCFM 3251729 YP_194675.1 CDS LBA1842 NC_006814.3 1853837 1854580 D alpha/beta hydrolase 1853837..1854580 Lactobacillus acidophilus NCFM 3251731 YP_194676.1 CDS LBA1843 NC_006814.3 1854577 1855338 R hypothetical protein complement(1854577..1855338) Lactobacillus acidophilus NCFM 3251732 YP_194677.1 CDS LBA1844 NC_006814.3 1855396 1856037 D hypothetical protein 1855396..1856037 Lactobacillus acidophilus NCFM 3251734 YP_194678.1 CDS LBA1845 NC_006814.3 1856066 1856860 R COG1085 Galactose-1-phosphate uridylyltransferase; di-tripeptide transporter complement(1856066..1856860) Lactobacillus acidophilus NCFM 3251736 YP_194679.1 CDS LBA1846 NC_006814.3 1857013 1858221 D hypothetical protein 1857013..1858221 Lactobacillus acidophilus NCFM 3251738 YP_194680.1 CDS LBA1847 NC_006814.3 1858310 1858507 D CG7497-PA; hypothetical protein 1858310..1858507 Lactobacillus acidophilus NCFM 3251739 YP_194681.1 CDS dtpT NC_006814.3 1858540 1860033 R di-tripeptide transport protein; di-tripeptide transporter complement(1858540..1860033) Lactobacillus acidophilus NCFM 3251742 YP_194682.1 CDS pepN NC_006814.3 1860145 1862679 R aminopeptidase complement(1860145..1862679) Lactobacillus acidophilus NCFM 3251744 YP_194683.1 CDS lysM NC_006814.3 1862891 1863253 D LysM; extracellular protein; aggregation promoting protein 1862891..1863253 Lactobacillus acidophilus NCFM 3251747 YP_194684.1 CDS LBA1851 NC_006814.3 1863331 1863426 R hypothetical protein complement(1863331..1863426) Lactobacillus acidophilus NCFM 3251749 YP_194685.1 CDS LBA1852 NC_006814.3 1863401 1864384 R d-ala,d-ala ligase complement(1863401..1864384) Lactobacillus acidophilus NCFM 3251748 YP_194688.1 CDS LBA1857 NC_006814.3 1866260 1867381 D integral membrane protein; hypothetical protein 1866260..1867381 Lactobacillus acidophilus NCFM 3251756 YP_194689.1 CDS LBA1858 NC_006814.3 1867402 1867908 R hypothetical protein complement(1867402..1867908) Lactobacillus acidophilus NCFM 3251758 YP_194690.1 CDS nisT NC_006814.3 1868004 1869767 R nisin transport protein complement(1868004..1869767) Lactobacillus acidophilus NCFM 3251760 YP_194691.1 CDS LBA1860 NC_006814.3 1869803 1870012 R UTP-glucose-1-phosphate uridyltransferase; hypothetical protein complement(1869803..1870012) Lactobacillus acidophilus NCFM 3251762 YP_194692.1 CDS LBA1861 NC_006814.3 1870301 1870426 R hypothetical protein complement(1870301..1870426) Lactobacillus acidophilus NCFM 3251763 YP_194693.1 CDS LBA1862 NC_006814.3 1870586 1871404 R COG1396 Predicted transcriptional regulators; hypothetical protein complement(1870586..1871404) Lactobacillus acidophilus NCFM 3251765 YP_194694.1 CDS LBA1863 NC_006814.3 1871837 1872328 R COG1396 Predicted transcriptional regulators; transcriptional regulator complement(1871837..1872328) Lactobacillus acidophilus NCFM 3251767 YP_194695.1 CDS LBA1864 NC_006814.3 1872452 1873309 R maltose ABC transporter permease complement(1872452..1873309) Lactobacillus acidophilus NCFM 3251771 YP_194696.1 CDS LBA1865 NC_006814.3 1873312 1874670 R maltose ABC transporter permease complement(1873312..1874670) Lactobacillus acidophilus NCFM 3251773 YP_194697.1 CDS LBA1866 NC_006814.3 1874741 1875967 R maltose ABC transporter permease complement(1874741..1875967) Lactobacillus acidophilus NCFM 3251775 YP_194698.1 CDS msmK NC_006814.3 1876054 1877160 R MsmK; multiple sugar-binding ABC transport system complement(1876054..1877160) Lactobacillus acidophilus NCFM 3251776 YP_194699.1 CDS LBA1868 NC_006814.3 1877209 1878591 D transposase 1877209..1878591 Lactobacillus acidophilus NCFM 3251778 YP_194700.1 CDS pgmB NC_006814.3 1878649 1879314 R COG0637 Predicted phosphatase-phosphohexomutase; beta-phosphoglucomutase complement(1878649..1879314) Lactobacillus acidophilus NCFM 3251780 YP_194701.1 CDS LBA1870 NC_006814.3 1879299 1881569 R maltose phosphorylase complement(1879299..1881569) Lactobacillus acidophilus NCFM 3251782 YP_194702.1 CDS LBA1871 NC_006814.3 1881740 1883461 R COG0366 Glycosidases; neopullulanase complement(1881740..1883461) Lactobacillus acidophilus NCFM 3251783 YP_194703.1 CDS LBA1872 NC_006814.3 1883465 1885120 R COG0366 Glycosidases; oligo-1,6-glucosidase complement(1883465..1885120) Lactobacillus acidophilus NCFM 3251785 YP_194704.1 CDS ackA NC_006814.3 1885232 1886407 R COG0282 Acetate kinase; acetate kinase complement(1885232..1886407) Lactobacillus acidophilus NCFM 3251787 YP_194705.1 CDS LBA1874 NC_006814.3 1886548 1887498 R LacI; COG1609 transcriptional regulators; transcriptional regulator family protein complement(1886548..1887498) Lactobacillus acidophilus NCFM 3251789 YP_194706.1 CDS LBA1875 NC_006814.3 1887507 1888280 R COG2365 protein tyrosine-serine phosphatase; protein-tyrosine-phosphatase complement(1887507..1888280) Lactobacillus acidophilus NCFM 3251791 YP_194707.1 CDS LBA1876 NC_006814.3 1888369 1889949 R ABC transporter ATP-binding protein complement(1888369..1889949) Lactobacillus acidophilus NCFM 3251792 YP_194708.1 CDS LBA1877 NC_006814.3 1890173 1890607 R COG1396 Predicted transcriptional regulators; hypothetical protein complement(1890173..1890607) Lactobacillus acidophilus NCFM 3251795 YP_194709.1 CDS glpK NC_006814.3 1890996 1892498 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(1890996..1892498) Lactobacillus acidophilus NCFM 3251798 YP_194710.1 CDS thiD NC_006814.3 1892629 1893447 D phosphomethylpyrimidine kinase 1892629..1893447 Lactobacillus acidophilus NCFM 3251801 YP_194711.1 CDS LBA1880 NC_006814.3 1893511 1893903 R hypothetical protein complement(1893511..1893903) Lactobacillus acidophilus NCFM 3251802 YP_194712.1 CDS LBA1881 NC_006814.3 1894064 1894957 D transposase 1894064..1894957 Lactobacillus acidophilus NCFM 3251805 YP_194713.1 CDS cobQ NC_006814.3 1895242 1895928 D CobQ; COG3442 Predicted glutamine amidotransferase; cobyric acid synthase 1895242..1895928 Lactobacillus acidophilus NCFM 3251807 YP_194714.1 CDS LBA1883 NC_006814.3 1895988 1896470 R conserved hypothetical protein; NLP-P60 family secreted protein complement(1895988..1896470) Lactobacillus acidophilus NCFM 3251809 YP_194715.1 CDS LBA1884 NC_006814.3 1896636 1897556 R permease complement(1896636..1897556) Lactobacillus acidophilus NCFM 3251810 YP_194716.1 CDS LBA1885 NC_006814.3 1897537 1898466 R permease complement(1897537..1898466) Lactobacillus acidophilus NCFM 3251812 YP_194717.1 CDS LBA1887 NC_006814.3 1898545 1899447 R transport protein; permease complement(1898545..1899447) Lactobacillus acidophilus NCFM 3251815 YP_194718.1 CDS LBA1889 NC_006814.3 1899519 1900160 R hypothetical protein complement(1899519..1900160) Lactobacillus acidophilus NCFM 3251816 YP_194719.1 CDS LBA1890 NC_006814.3 1900276 1900635 R COG0845 Membrane-fusion protein; hypothetical protein complement(1900276..1900635) Lactobacillus acidophilus NCFM 3251818 YP_194720.1 CDS purB NC_006814.3 1900707 1902002 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1900707..1902002) Lactobacillus acidophilus NCFM 3251819 YP_194721.1 CDS purA NC_006814.3 1902006 1903295 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(1902006..1903295) Lactobacillus acidophilus NCFM 3251821 YP_194722.1 CDS LBA1893 NC_006814.3 1903494 1904486 D COG0516 IMP dehydrogenase-GMP reductase; guanosine 5'-monophosphate oxidoreductase 1903494..1904486 Lactobacillus acidophilus NCFM 3251822 YP_194723.1 CDS LBA1894 NC_006814.3 1904521 1904622 R hypothetical protein complement(1904521..1904622) Lactobacillus acidophilus NCFM 3251824 YP_194724.1 CDS LBA1895 NC_006814.3 1904930 1905988 R hypothetical protein complement(1904930..1905988) Lactobacillus acidophilus NCFM 3251829 YP_194725.1 CDS asnA NC_006814.3 1906422 1907432 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1906422..1907432 Lactobacillus acidophilus NCFM 3251832 YP_194726.1 CDS frnE NC_006814.3 1907591 1908244 R FrnE; protein-disulfide isomerase complement(1907591..1908244) Lactobacillus acidophilus NCFM 3251834 YP_194727.1 CDS trxR NC_006814.3 1908267 1909199 R thioredoxin reductase complement(1908267..1909199) Lactobacillus acidophilus NCFM 3251836 YP_194728.1 CDS LBA1899 NC_006814.3 1909222 1909884 R family; ArsR; COG0607 Rhodanese-related sulfurtransferase; transcriptional regulator complement(1909222..1909884) Lactobacillus acidophilus NCFM 3251838 YP_194729.1 CDS LBA1900 NC_006814.3 1909868 1910011 R hypothetical protein complement(1909868..1910011) Lactobacillus acidophilus NCFM 3251839 YP_194730.1 CDS LBA1901 NC_006814.3 1910004 1910315 R thioredoxin 2; thioredoxin complement(1910004..1910315) Lactobacillus acidophilus NCFM 3251841 YP_194731.1 CDS LBA1902 NC_006814.3 1910472 1911863 R COG0531 Amino acid transporters; amino acid permease complement(1910472..1911863) Lactobacillus acidophilus NCFM 3251842 YP_194732.1 CDS LBA1903 NC_006814.3 1911877 1912605 R COG2071 Predicted glutamine amidotransferases; glutamine amidotransferase complement(1911877..1912605) Lactobacillus acidophilus NCFM 3251844 YP_194733.1 CDS yifK NC_006814.3 1912824 1914197 R YifK; amino acid permease complement(1912824..1914197) Lactobacillus acidophilus NCFM 3251846 YP_194734.1 CDS aapA NC_006814.3 1914241 1915590 R AapA; amino acid permease complement(1914241..1915590) Lactobacillus acidophilus NCFM 3251847 YP_194735.1 CDS LBA1906 NC_006814.3 1915704 1916570 R hypothetical protein complement(1915704..1916570) Lactobacillus acidophilus NCFM 3251849 YP_194736.1 CDS LBA1907 NC_006814.3 1916650 1918158 D transposase 1916650..1918158 Lactobacillus acidophilus NCFM 3251851 YP_194737.1 CDS LBA1908 NC_006814.3 1918204 1918314 D hypothetical protein 1918204..1918314 Lactobacillus acidophilus NCFM 3251852 YP_194738.1 CDS LBA1909 NC_006814.3 1918337 1918969 R COG0681 Signal peptidase I; signal peptidase I complement(1918337..1918969) Lactobacillus acidophilus NCFM 3251854 YP_194739.1 CDS clpE NC_006814.3 1919088 1921217 R ClpE; ATP-dependent protease complement(1919088..1921217) Lactobacillus acidophilus NCFM 3251855 YP_194740.1 CDS LBA1911 NC_006814.3 1921535 1922446 R cell surface hydrolase complement(1921535..1922446) Lactobacillus acidophilus NCFM 3251857 YP_194741.1 CDS LBA1912 NC_006814.3 1922427 1923737 R PTS system cellobiose-specific transporter subunit IIC complement(1922427..1923737) Lactobacillus acidophilus NCFM 3251859 YP_194742.1 CDS LBA1913 NC_006814.3 1923826 1924527 D ABC transporter ATPase 1923826..1924527 Lactobacillus acidophilus NCFM 3251861 YP_194743.1 CDS LBA1914 NC_006814.3 1924528 1927068 D ABC transporter permease 1924528..1927068 Lactobacillus acidophilus NCFM 3251863 YP_194744.1 CDS LBA1915 NC_006814.3 1927105 1927341 D hypothetical protein 1927105..1927341 Lactobacillus acidophilus NCFM 3251865 YP_194745.1 CDS LBA1917 NC_006814.3 1927385 1929001 R polysaccharide biosynthesis family protein; polysaccharide transporter complement(1927385..1929001) Lactobacillus acidophilus NCFM 3251867 YP_194746.1 CDS lysA NC_006814.3 1929296 1930267 D LysA; lysin; lysin 1929296..1930267 Lactobacillus acidophilus NCFM 3251869 YP_194747.1 CDS LBA1919 NC_006814.3 1930324 1931001 R hypothetical protein complement(1930324..1931001) Lactobacillus acidophilus NCFM 3251871 YP_194748.1 CDS LBA1920 NC_006814.3 1931444 1931632 R hypothetical protein complement(1931444..1931632) Lactobacillus acidophilus NCFM 3251874 YP_194749.1 CDS LBA1921 NC_006814.3 1931692 1932063 R COG3247 Uncharacterized conserved protein; hypothetical protein complement(1931692..1932063) Lactobacillus acidophilus NCFM 3251875 YP_194750.1 CDS LBA1922 NC_006814.3 1932187 1933128 R penicillin-binding protein complement(1932187..1933128) Lactobacillus acidophilus NCFM 3251877 YP_194751.1 CDS dltD NC_006814.3 1933128 1934414 R DltD; COG3966 protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid; hypothetical protein complement(1933128..1934414) Lactobacillus acidophilus NCFM 3251878 YP_194752.1 CDS dltC NC_006814.3 1934407 1934646 R D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 complement(1934407..1934646) Lactobacillus acidophilus NCFM 3251879 YP_194753.1 CDS dltB NC_006814.3 1934681 1935919 R DltB; membrane protein complement(1934681..1935919) Lactobacillus acidophilus NCFM 3251314 YP_194754.1 CDS dltA NC_006814.3 1935919 1937433 R transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 complement(1935919..1937433) Lactobacillus acidophilus NCFM 3251316 YP_194755.1 CDS LBA1927 NC_006814.3 1938062 1939198 R hypothetical protein complement(1938062..1939198) Lactobacillus acidophilus NCFM 3251317 YP_194756.1 CDS LBA1928 NC_006814.3 1939798 1940274 D COG0517 FOG CBS domain; hypothetical protein 1939798..1940274 Lactobacillus acidophilus NCFM 3251881 YP_194757.1 CDS LBA1929 NC_006814.3 1940395 1942251 D COG2217 Cation transport ATPase; cadmium efflux ATPase 1940395..1942251 Lactobacillus acidophilus NCFM 3251883 YP_194758.1 CDS LBA1931 NC_006814.3 1942398 1943567 D Na-H antiporter 1942398..1943567 Lactobacillus acidophilus NCFM 3251885 YP_194759.1 CDS LBA1932 NC_006814.3 1943856 1944503 R COG3595 Uncharacterized conserved protein; hypothetical protein complement(1943856..1944503) Lactobacillus acidophilus NCFM 3251886 YP_194760.1 CDS mutT NC_006814.3 1944559 1946121 R MutT; ABC transporter ATP-binding protein/permease complement(1944559..1946121) Lactobacillus acidophilus NCFM 3251887 YP_194761.1 CDS mutR NC_006814.3 1946226 1947074 D MutR; hypothetical protein; transcriptional regulator 1946226..1947074 Lactobacillus acidophilus NCFM 3251890 YP_194762.1 CDS LBA1935 NC_006814.3 1947131 1947745 D phage capsid protein 1947131..1947745 Lactobacillus acidophilus NCFM 3251892 YP_194763.1 CDS LBA1936 NC_006814.3 1947726 1948250 D COG1396 Predicted transcriptional regulators; hypothetical protein 1947726..1948250 Lactobacillus acidophilus NCFM 3251893 YP_194764.1 CDS LBA1937 NC_006814.3 1948290 1948943 R hypothetical protein complement(1948290..1948943) Lactobacillus acidophilus NCFM 3251894 YP_194765.1 CDS LBA1938 NC_006814.3 1949031 1950134 D COG1434 Uncharacterized conserved protein; hypothetical protein 1949031..1950134 Lactobacillus acidophilus NCFM 3251896 YP_194766.1 CDS LBA1939 NC_006814.3 1950153 1952492 D ABC transporter ATP-binding protein 1950153..1952492 Lactobacillus acidophilus NCFM 3251897 YP_194767.1 CDS LBA1940 NC_006814.3 1952531 1953136 R COG4684 Predicted membrane protein; hypothetical protein complement(1952531..1953136) Lactobacillus acidophilus NCFM 3251899 YP_194768.1 CDS LBA1942 NC_006814.3 1953232 1954293 D hypothetical protein 1953232..1954293 Lactobacillus acidophilus NCFM 3251901 YP_194769.1 CDS LBA1943 NC_006814.3 1954506 1955591 D lipoprotein 1954506..1955591 Lactobacillus acidophilus NCFM 3251903 YP_194770.1 CDS LBA1944 NC_006814.3 1955658 1957196 D sugar ABC transporter ATP binding protein 1955658..1957196 Lactobacillus acidophilus NCFM 3251906 YP_194771.1 CDS LBA1945 NC_006814.3 1957189 1958340 D sugar ABC transporter permease 1957189..1958340 Lactobacillus acidophilus NCFM 3251907 YP_194772.1 CDS LBA1946 NC_006814.3 1958341 1959297 D sugar ABC transporter permease 1958341..1959297 Lactobacillus acidophilus NCFM 3251908 YP_194773.1 CDS LBA1947 NC_006814.3 1959404 1960231 R aldehyde reductase complement(1959404..1960231) Lactobacillus acidophilus NCFM 3251910 YP_194774.1 CDS LBA1948 NC_006814.3 1960351 1961070 D glucosamine-6-phosphate isomerase 1960351..1961070 Lactobacillus acidophilus NCFM 3251912 YP_194775.1 CDS LBA1949 NC_006814.3 1961249 1961896 D COG1428 Deoxynucleoside kinases; deoxyadenosine kinase 1961249..1961896 Lactobacillus acidophilus NCFM 3251913 YP_194776.1 CDS LBA1950 NC_006814.3 1961922 1962608 D COG1428 Deoxynucleoside kinases; deoxyguanosine kinase 1961922..1962608 Lactobacillus acidophilus NCFM 3251915 YP_194777.1 CDS LBA1951 NC_006814.3 1962667 1963467 R hypothetical protein complement(1962667..1963467) Lactobacillus acidophilus NCFM 3251917 YP_194778.1 CDS LBA1952 NC_006814.3 1963692 1964999 D xanthine-uracil permeases family protein; xanthine-uracil permeases 1963692..1964999 Lactobacillus acidophilus NCFM 3251919 YP_194779.1 CDS LBA1954 NC_006814.3 1965072 1966097 D transposase 1965072..1966097 Lactobacillus acidophilus NCFM 3251921 YP_194780.1 CDS LBA1955 NC_006814.3 1966662 1967393 R MerR; transcriptional activator; transcriptional regulator family protein complement(1966662..1967393) Lactobacillus acidophilus NCFM 3251922 YP_194781.1 CDS LBA1956 NC_006814.3 1967573 1968829 D COG2252 Permeases; xanthine-uracil permeases family protein 1967573..1968829 Lactobacillus acidophilus NCFM 3251924 YP_194782.1 CDS pepL NC_006814.3 1969365 1970264 D prolyl aminopeptidase 1969365..1970264 Lactobacillus acidophilus NCFM 3251925 YP_194783.1 CDS oppA NC_006814.3 1970268 1971893 D OppA; oligopeptide ABC transporter substrate binding protein 1970268..1971893 Lactobacillus acidophilus NCFM 3251927 YP_194786.1 CDS oppA NC_006814.3 1974129 1975757 D oligopeptide ABC transporter substrate binding protein 1974129..1975757 Lactobacillus acidophilus NCFM 3251932 YP_194787.1 CDS atkY NC_006814.3 1975860 1976300 D the negative regulator of copYZAB operon 1975860..1976300 Lactobacillus acidophilus NCFM 3251935 YP_194788.1 CDS LBA1964 NC_006814.3 1976310 1976687 D hypothetical protein 1976310..1976687 Lactobacillus acidophilus NCFM 3251936 YP_194789.1 CDS LBA1965 NC_006814.3 1976687 1976974 D COG4633 Uncharacterized protein conserved in bacteria; hypothetical protein 1976687..1976974 Lactobacillus acidophilus NCFM 3251938 YP_194790.1 CDS copA NC_006814.3 1976974 1978899 D COG2217 Cation transport ATPase; copper-transporting ATPase 1976974..1978899 Lactobacillus acidophilus NCFM 3251939 YP_194791.1 CDS gdmH NC_006814.3 1978991 1980043 D COG1434 Uncharacterized conserved protein; hypothetical protein 1978991..1980043 Lactobacillus acidophilus NCFM 3251942 YP_194792.1 CDS LBA1968 NC_006814.3 1980045 1980758 R hypothetical protein complement(1980045..1980758) Lactobacillus acidophilus NCFM 3251943 YP_194793.1 CDS flpA NC_006814.3 1980774 1981427 R FlpA; COG0664 cAMP-binding protein -catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; FNR-like transcriptional regulator complement(1980774..1981427) Lactobacillus acidophilus NCFM 3251944 YP_194794.1 CDS LBA1970 NC_006814.3 1981490 1981639 R hypothetical protein complement(1981490..1981639) Lactobacillus acidophilus NCFM 3251946 YP_194795.1 CDS LBA1971 NC_006814.3 1981700 1982803 R COG0498 Threonine synthase; hypothetical protein complement(1981700..1982803) Lactobacillus acidophilus NCFM 3251948 YP_194796.1 CDS yadQ NC_006814.3 1982831 1984390 R voltage-gated chloride channel family protein complement(1982831..1984390) Lactobacillus acidophilus NCFM 3251949 YP_194797.1 CDS LBA1973 NC_006814.3 1984485 1985888 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(1984485..1985888) Lactobacillus acidophilus NCFM 3251952 YP_194798.1 CDS poxB NC_006814.3 1986105 1987910 R COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome); pyruvate oxidase complement(1986105..1987910) Lactobacillus acidophilus NCFM 3251954 YP_194799.1 CDS gidA NC_006814.3 1988269 1990167 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(1988269..1990167) Lactobacillus acidophilus NCFM 3251956 YP_194800.1 CDS trmE NC_006814.3 1990180 1991565 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(1990180..1991565) Lactobacillus acidophilus NCFM 3251958 YP_194801.1 CDS LBA1977 NC_006814.3 1991677 1992552 R stage III sporulation protein J complement(1991677..1992552) Lactobacillus acidophilus NCFM 3251960 YP_194802.1 CDS rnpA NC_006814.3 1992554 1992922 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(1992554..1992922) Lactobacillus acidophilus NCFM 3251962 YP_194803.1 CDS rpmH NC_006814.3 1992974 1993114 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1992974..1993114) Lactobacillus acidophilus NCFM 3251963 LBA2000 tRNA LBA2000 NC_006814.3 19474 19546 D tRNA-Thr 19474..19546 Lactobacillus acidophilus NCFM 3251965 LBA2004 tRNA LBA2004 NC_006814.3 64127 64199 D tRNA-Asn 64127..64199 Lactobacillus acidophilus NCFM 3251972 LBA2005 tRNA LBA2005 NC_006814.3 79456 79528 R tRNA-Lys complement(79456..79528) Lactobacillus acidophilus NCFM 3251974 LBA2006 tRNA LBA2006 NC_006814.3 79704 79776 R tRNA-Lys complement(79704..79776) Lactobacillus acidophilus NCFM 3251976 LBA2007 tRNA LBA2007 NC_006814.3 189006 189078 D tRNA-Thr 189006..189078 Lactobacillus acidophilus NCFM 3251977 LBA2008 tRNA LBA2008 NC_006814.3 203489 203559 R tRNA-Gly complement(203489..203559) Lactobacillus acidophilus NCFM 3251980 LBA2009 tRNA LBA2009 NC_006814.3 275354 275428 D tRNA-Gly 275354..275428 Lactobacillus acidophilus NCFM 3251981 LBA2010 tRNA LBA2010 NC_006814.3 275551 275625 D tRNA-Gly 275551..275625 Lactobacillus acidophilus NCFM 3251983 LBA2011 tRNA LBA2011 NC_006814.3 275660 275733 D tRNA-Pro 275660..275733 Lactobacillus acidophilus NCFM 3251985 LBA2013 tRNA LBA2013 NC_006814.3 415471 415545 D tRNA-Ile 415471..415545 Lactobacillus acidophilus NCFM 3251988 LBA2014 tRNA LBA2014 NC_006814.3 415602 415674 D tRNA-Ala 415602..415674 Lactobacillus acidophilus NCFM 3251990 LBA2017 tRNA LBA2017 NC_006814.3 418890 418962 D tRNA-Val 418890..418962 Lactobacillus acidophilus NCFM 3251996 LBA2018 tRNA LBA2018 NC_006814.3 418965 419037 D tRNA-Lys 418965..419037 Lactobacillus acidophilus NCFM 3251998 LBA2019 tRNA LBA2019 NC_006814.3 419050 419131 D tRNA-Leu 419050..419131 Lactobacillus acidophilus NCFM 3251999 LBA2020 tRNA LBA2020 NC_006814.3 419156 419228 D tRNA-Thr 419156..419228 Lactobacillus acidophilus NCFM 3252001 LBA2021 tRNA LBA2021 NC_006814.3 419239 419310 D tRNA-Gly 419239..419310 Lactobacillus acidophilus NCFM 3252003 LBA2022 tRNA LBA2022 NC_006814.3 419323 419408 D tRNA-Leu 419323..419408 Lactobacillus acidophilus NCFM 3252006 LBA2023 tRNA LBA2023 NC_006814.3 419417 419490 D tRNA-Arg 419417..419490 Lactobacillus acidophilus NCFM 3252007 LBA2024 tRNA LBA2024 NC_006814.3 419496 419569 D tRNA-Pro 419496..419569 Lactobacillus acidophilus NCFM 3252309 LBA2025 tRNA LBA2025 NC_006814.3 419600 419673 D tRNA-Met 419600..419673 Lactobacillus acidophilus NCFM 3252848 LBA2026 tRNA LBA2026 NC_006814.3 419686 419759 D tRNA-Met 419686..419759 Lactobacillus acidophilus NCFM 3252139 LBA2027 tRNA LBA2027 NC_006814.3 419776 419849 D tRNA-Met 419776..419849 Lactobacillus acidophilus NCFM 3252924 LBA2028 tRNA LBA2028 NC_006814.3 419853 419926 D tRNA-Asp 419853..419926 Lactobacillus acidophilus NCFM 3252559 LBA2029 tRNA LBA2029 NC_006814.3 419933 420005 D tRNA-Phe 419933..420005 Lactobacillus acidophilus NCFM 3252465 LBA2030 tRNA LBA2030 NC_006814.3 420025 420095 D tRNA-Gly 420025..420095 Lactobacillus acidophilus NCFM 3252963 LBA2031 tRNA LBA2031 NC_006814.3 420101 420175 D tRNA-Ile 420101..420175 Lactobacillus acidophilus NCFM 3252781 LBA2032 tRNA LBA2032 NC_006814.3 420178 420267 D tRNA-Ser 420178..420267 Lactobacillus acidophilus NCFM 3252281 LBA2033 tRNA LBA2033 NC_006814.3 423962 424033 D tRNA-Glu 423962..424033 Lactobacillus acidophilus NCFM 3252471 LBA2034 tRNA LBA2034 NC_006814.3 424071 424157 D tRNA-Ser 424071..424157 Lactobacillus acidophilus NCFM 3252291 LBA2035 tRNA LBA2035 NC_006814.3 424167 424240 D tRNA-Met 424167..424240 Lactobacillus acidophilus NCFM 3252911 LBA2036 tRNA LBA2036 NC_006814.3 424244 424317 D tRNA-Asp 424244..424317 Lactobacillus acidophilus NCFM 3252875 LBA2037 tRNA LBA2037 NC_006814.3 424324 424399 D tRNA-Phe 424324..424399 Lactobacillus acidophilus NCFM 3252581 LBA2038 tRNA LBA2038 NC_006814.3 424404 424485 D tRNA-Tyr 424404..424485 Lactobacillus acidophilus NCFM 3252967 LBA2039 tRNA LBA2039 NC_006814.3 424490 424560 D tRNA-Trp 424490..424560 Lactobacillus acidophilus NCFM 3252941 LBA2040 tRNA LBA2040 NC_006814.3 424573 424648 D tRNA-His 424573..424648 Lactobacillus acidophilus NCFM 3252459 LBA2041 tRNA LBA2041 NC_006814.3 424653 424724 D tRNA-Gln 424653..424724 Lactobacillus acidophilus NCFM 3252576 LBA2042 tRNA LBA2042 NC_006814.3 424748 424818 D tRNA-Cys 424748..424818 Lactobacillus acidophilus NCFM 3252303 LBA2043 tRNA LBA2043 NC_006814.3 424856 424940 D tRNA-Leu 424856..424940 Lactobacillus acidophilus NCFM 3252801 LBA2047 tRNA LBA2047 NC_006814.3 439119 439191 D tRNA-Asn 439119..439191 Lactobacillus acidophilus NCFM 3252995 LBA2048 tRNA LBA2048 NC_006814.3 463546 463618 D tRNA-Thr 463546..463618 Lactobacillus acidophilus NCFM 3252958 LBA2049 tRNA LBA2049 NC_006814.3 497137 497208 D tRNA-Gln 497137..497208 Lactobacillus acidophilus NCFM 3252919 LBA2050 tRNA LBA2050 NC_006814.3 500651 500732 D tRNA-Tyr 500651..500732 Lactobacillus acidophilus NCFM 3252860 LBA2051 tRNA LBA2051 NC_006814.3 500767 500838 D tRNA-Gln 500767..500838 Lactobacillus acidophilus NCFM 3252707 LBA2052 tRNA LBA2052 NC_006814.3 514446 514533 D tRNA-Leu 514446..514533 Lactobacillus acidophilus NCFM 3252484 LBA2053 tRNA LBA2053 NC_006814.3 538938 539024 D tRNA-Ser 538938..539024 Lactobacillus acidophilus NCFM 3253015 LBA2054 tRNA LBA2054 NC_006814.3 539031 539104 D tRNA-Asp 539031..539104 Lactobacillus acidophilus NCFM 3252758 LBA2055 tRNA LBA2055 NC_006814.3 539111 539186 D tRNA-His 539111..539186 Lactobacillus acidophilus NCFM 3252154 LBA2056 tRNA LBA2056 NC_006814.3 539191 539263 D tRNA-Val 539191..539263 Lactobacillus acidophilus NCFM 3253013 LBA2057 tRNA LBA2057 NC_006814.3 606705 606777 D tRNA-Arg 606705..606777 Lactobacillus acidophilus NCFM 3252095 LBA2058 tRNA LBA2058 NC_006814.3 691550 691621 R tRNA-Arg complement(691550..691621) Lactobacillus acidophilus NCFM 3251292 LBA2059 tRNA LBA2059 NC_006814.3 743039 743110 D tRNA-Glu 743039..743110 Lactobacillus acidophilus NCFM 3251291 LBA2060 tRNA LBA2060 NC_006814.3 743116 743188 D tRNA-Gln 743116..743188 Lactobacillus acidophilus NCFM 3251466 LBA2061 tRNA LBA2061 NC_006814.3 870429 870517 D tRNA-Ser 870429..870517 Lactobacillus acidophilus NCFM 3251814 LBA2062 tRNA LBA2062 NC_006814.3 1326824 1326900 D tRNA-Arg 1326824..1326900 Lactobacillus acidophilus NCFM 3252603 LBA2063 tRNA LBA2063 NC_006814.3 1597743 1597826 D tRNA-Leu 1597743..1597826 Lactobacillus acidophilus NCFM 3251456 LBA2064 tRNA LBA2064 NC_006814.3 1626606 1626678 R tRNA-Val complement(1626606..1626678) Lactobacillus acidophilus NCFM 3251336 LBA2065 tRNA LBA2065 NC_006814.3 1626684 1626755 R tRNA-Glu complement(1626684..1626755) Lactobacillus acidophilus NCFM 3251335 LBA2066 tRNA LBA2066 NC_006814.3 1627661 1627751 R tRNA-Ser complement(1627661..1627751) Lactobacillus acidophilus NCFM 3251285 LBA2067 tRNA LBA2067 NC_006814.3 1627763 1627835 R tRNA-Asn complement(1627763..1627835) Lactobacillus acidophilus NCFM 3251284 LBA2072 tRNA LBA2072 NC_006814.3 1904686 1904759 D tRNA-Arg 1904686..1904759 Lactobacillus acidophilus NCFM 3251826 LBA2073 tRNA LBA2073 NC_006814.3 1904769 1904842 D tRNA-Pro 1904769..1904842 Lactobacillus acidophilus NCFM 3251828 LBA2001 rRNA LBA2001 NC_006814.3 59255 60826 D 16S ribosomal RNA 59255..60826 Lactobacillus acidophilus NCFM 3251967 LBA2002 rRNA LBA2002 NC_006814.3 60957 64007 D 23S ribosomal RNA 60957..64007 Lactobacillus acidophilus NCFM 3251969 LBA2003 rRNA LBA2003 NC_006814.3 63998 64114 D 5S ribosomal RNA 63998..64114 Lactobacillus acidophilus NCFM 3251970 LBA2012 rRNA LBA2012 NC_006814.3 413779 415350 D 16S ribosomal RNA 413779..415350 Lactobacillus acidophilus NCFM 3251986 LBA2015 rRNA LBA2015 NC_006814.3 415728 418779 D 23S ribosomal RNA 415728..418779 Lactobacillus acidophilus NCFM 3251992 LBA2016 rRNA LBA2016 NC_006814.3 418770 418886 D 5S ribosomal RNA 418770..418886 Lactobacillus acidophilus NCFM 3251994 LBA2044 rRNA LBA2044 NC_006814.3 434247 435818 D 16S ribosomal RNA 434247..435818 Lactobacillus acidophilus NCFM 3252052 LBA2045 rRNA LBA2045 NC_006814.3 435949 438999 D 23S ribosomal RNA 435949..438999 Lactobacillus acidophilus NCFM 3253006 LBA2046 rRNA LBA2046 NC_006814.3 438990 439106 D 5S ribosomal RNA 438990..439106 Lactobacillus acidophilus NCFM 3252859 LBA2068 rRNA LBA2068 NC_006814.3 1627848 1627964 R 5S ribosomal RNA complement(1627848..1627964) Lactobacillus acidophilus NCFM 3252405 LBA2069 rRNA LBA2069 NC_006814.3 1627955 1631003 R 23S ribosomal RNA complement(1627955..1631003) Lactobacillus acidophilus NCFM 3251286 LBA2070 rRNA LBA2070 NC_006814.3 1630739 1632556 R 23S ribosomal RNA complement(1630739..1632556) Lactobacillus acidophilus NCFM 3251460 LBA2071 rRNA LBA2071 NC_006814.3 1632689 1634260 R 16S ribosomal RNA complement(1632689..1634260) Lactobacillus acidophilus NCFM 3251459