-- dump date 20140619_123823 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 257314000001 SEQ_END SEQ_END NC_005362.1 1992676 1992676 DR NC_005362.1; contig end 1992676..1992676 Lactobacillus johnsonii NCC 533 NP_964015.1 CDS dnaA NC_005362.1 1 1365 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1..1365 Lactobacillus johnsonii NCC 533 2743038 NP_964016.1 CDS LJ0002 NC_005362.1 1546 2676 D DNA polymerase III, beta chain 1546..2676 Lactobacillus johnsonii NCC 533 2743635 NP_964017.1 CDS LJ0002b NC_005362.1 2951 3100 D hypothetical protein 2951..3100 Lactobacillus johnsonii NCC 533 2742647 NP_964018.1 CDS recF NC_005362.1 3104 4228 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3104..4228 Lactobacillus johnsonii NCC 533 2742248 NP_964019.1 CDS LJ0004 NC_005362.1 4229 6196 D DNA gyrase subunit B 4229..6196 Lactobacillus johnsonii NCC 533 2743732 NP_964020.1 CDS LJ0005 NC_005362.1 6207 8696 D DNA gyrase subunit A 6207..8696 Lactobacillus johnsonii NCC 533 2741885 NP_964021.1 CDS rpsF NC_005362.1 8883 9179 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 8883..9179 Lactobacillus johnsonii NCC 533 2742439 NP_964022.1 CDS LJ0007 NC_005362.1 9213 9731 D single-strand binding protein 9213..9731 Lactobacillus johnsonii NCC 533 2743024 NP_964023.1 CDS rpsR NC_005362.1 9756 9992 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 9756..9992 Lactobacillus johnsonii NCC 533 2743696 NP_964024.1 CDS LJ0009 NC_005362.1 10086 11003 D contains Mg+ and Co2+ transporter domain; hypothetical protein 10086..11003 Lactobacillus johnsonii NCC 533 2743094 NP_964025.1 CDS LJ0010 NC_005362.1 11110 13128 D contains DHH phosphoesterase domain; hypothetical protein 11110..13128 Lactobacillus johnsonii NCC 533 2743243 NP_964026.1 CDS rplI NC_005362.1 13140 13595 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 13140..13595 Lactobacillus johnsonii NCC 533 2742867 NP_964027.1 CDS LJ0012 NC_005362.1 13598 14971 D replicative DNA helicase 13598..14971 Lactobacillus johnsonii NCC 533 2742791 NP_964028.1 CDS LJ0013 NC_005362.1 15069 15953 D fructokinase 15069..15953 Lactobacillus johnsonii NCC 533 2743065 NP_964029.1 CDS LJ0014 NC_005362.1 16017 17159 R hypothetical protein complement(16017..17159) Lactobacillus johnsonii NCC 533 2743161 NP_964030.1 CDS LJ0015 NC_005362.1 17277 19295 R hypothetical protein complement(17277..19295) Lactobacillus johnsonii NCC 533 2742638 NP_964031.1 CDS LJ0016 NC_005362.1 19628 20980 R contains amino acid permease domain; hypothetical protein complement(19628..20980) Lactobacillus johnsonii NCC 533 2743143 NP_964032.1 CDS LJ0017 NC_005362.1 21517 22680 D hypothetical protein 21517..22680 Lactobacillus johnsonii NCC 533 2742491 NP_964033.1 CDS LJ0018 NC_005362.1 22717 23577 R contains acyltransferase domain; hypothetical protein complement(22717..23577) Lactobacillus johnsonii NCC 533 2743479 NP_964034.1 CDS LJ0019 NC_005362.1 23719 24366 D hypothetical protein 23719..24366 Lactobacillus johnsonii NCC 533 2743666 NP_964035.1 CDS LJ0020 NC_005362.1 24563 25363 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(24563..25363) Lactobacillus johnsonii NCC 533 2743472 NP_964036.1 CDS LJ0021 NC_005362.1 25638 26702 D contains ThiF family domain; hypothetical protein 25638..26702 Lactobacillus johnsonii NCC 533 2743202 NP_964037.1 CDS LJ0022 NC_005362.1 26708 27913 D major facilitator superfamily permease 26708..27913 Lactobacillus johnsonii NCC 533 2743615 NP_964038.1 CDS LJ0023 NC_005362.1 28305 28994 R hypothetical protein complement(28305..28994) Lactobacillus johnsonii NCC 533 2742170 NP_964039.1 CDS LJ0024 NC_005362.1 29130 29837 D contains probable haloacid dehalogenase-like hydrolase domain; hypothetical protein 29130..29837 Lactobacillus johnsonii NCC 533 2742948 NP_964040.1 CDS LJ0025 NC_005362.1 29872 30711 R contains DUF194 domain; hypothetical protein complement(29872..30711) Lactobacillus johnsonii NCC 533 2743268 NP_964041.1 CDS LJ0026 NC_005362.1 31207 32814 D ABC transporter ATPase and permease components 31207..32814 Lactobacillus johnsonii NCC 533 2743555 NP_964042.1 CDS LJ0027 NC_005362.1 32837 33646 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(32837..33646) Lactobacillus johnsonii NCC 533 2741983 NP_964043.1 CDS LJ0028 NC_005362.1 33801 35720 D contains elongation factor Tu GTP binding domain; hypothetical protein 33801..35720 Lactobacillus johnsonii NCC 533 2742620 NP_964044.1 CDS LJ0029 NC_005362.1 35975 37309 R contains voltage gated chloride channel domain; hypothetical protein complement(35975..37309) Lactobacillus johnsonii NCC 533 2742767 NP_964045.1 CDS LJ0030 NC_005362.1 37838 39571 R endopeptidase O complement(37838..39571) Lactobacillus johnsonii NCC 533 2742924 NP_964046.1 CDS LJ0031 NC_005362.1 39672 40538 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 39672..40538 Lactobacillus johnsonii NCC 533 2743215 NP_964047.1 CDS LJ0032 NC_005362.1 40727 42001 D major facilitator superfamily permease 40727..42001 Lactobacillus johnsonii NCC 533 2742895 NP_964048.1 CDS LJ0033 NC_005362.1 42139 43164 R transposase complement(42139..43164) Lactobacillus johnsonii NCC 533 2743673 NP_964049.1 CDS LJ0034 NC_005362.1 43272 44198 R contains CorA-like Mg2+ transporter domain; hypothetical protein complement(43272..44198) Lactobacillus johnsonii NCC 533 2742502 NP_964050.1 CDS LJ0034b NC_005362.1 44502 44663 D hypothetical protein 44502..44663 Lactobacillus johnsonii NCC 533 2743493 NP_964051.1 CDS LJ0035 NC_005362.1 44703 44969 D hypothetical protein 44703..44969 Lactobacillus johnsonii NCC 533 2742936 NP_964052.1 CDS LJ0036 NC_005362.1 45106 45933 D exodeoxyribonuclease 45106..45933 Lactobacillus johnsonii NCC 533 2741957 NP_964053.1 CDS LJ0037 NC_005362.1 46005 48845 D contains helicase conserved C-terminal domain; hypothetical protein 46005..48845 Lactobacillus johnsonii NCC 533 2743213 NP_964054.1 CDS LJ0038 NC_005362.1 48935 49441 D hypothetical protein 48935..49441 Lactobacillus johnsonii NCC 533 2743361 NP_964055.1 CDS LJ0039 NC_005362.1 49555 49821 D hypothetical protein 49555..49821 Lactobacillus johnsonii NCC 533 2742362 NP_964056.1 CDS LJ0040 NC_005362.1 49857 50090 R hypothetical protein complement(49857..50090) Lactobacillus johnsonii NCC 533 2743450 NP_964057.1 CDS LJ0041 NC_005362.1 50221 51270 D contains DUF20 region; hypothetical protein 50221..51270 Lactobacillus johnsonii NCC 533 2742820 NP_964058.1 CDS LJ0042 NC_005362.1 51471 52805 D contains pyridine nucleotide-disulphide oxidoreductase domain; hypothetical protein 51471..52805 Lactobacillus johnsonii NCC 533 2741941 NP_964059.1 CDS LJ0043 NC_005362.1 52848 54002 R inosine-5-monophosphate dehydrogenase complement(52848..54002) Lactobacillus johnsonii NCC 533 2742558 NP_964060.1 CDS LJ0044 NC_005362.1 54076 54651 R hypothetical protein complement(54076..54651) Lactobacillus johnsonii NCC 533 2742661 NP_964061.1 CDS LJ0045 NC_005362.1 54728 55741 R D-lactate dehydrogenase complement(54728..55741) Lactobacillus johnsonii NCC 533 2742217 NP_964062.1 CDS LJ0046 NC_005362.1 55999 58611 D hypothetical protein 55999..58611 Lactobacillus johnsonii NCC 533 2742964 NP_964063.1 CDS LJ0047 NC_005362.1 59228 65647 D contains gram positive anchor domain; hypothetical protein 59228..65647 Lactobacillus johnsonii NCC 533 2742215 NP_964064.1 CDS LJ0048 NC_005362.1 65803 68754 D hypothetical protein 65803..68754 Lactobacillus johnsonii NCC 533 2743338 NP_964065.1 CDS LJ0049 NC_005362.1 68742 70337 D contains amino acid permease domain; hypothetical protein 68742..70337 Lactobacillus johnsonii NCC 533 2743380 NP_964066.1 CDS LJ0050 NC_005362.1 70490 71416 D contains transcriptional regulator helix-turn-helix domain, lysR family; hypothetical protein 70490..71416 Lactobacillus johnsonii NCC 533 2742957 NP_964067.1 CDS LJ0051 NC_005362.1 71548 73398 D contains FAD binding domain; hypothetical protein 71548..73398 Lactobacillus johnsonii NCC 533 2743056 NP_964068.1 CDS LJ0052 NC_005362.1 73489 74853 D branched-chain amino acid transporter 73489..74853 Lactobacillus johnsonii NCC 533 2743107 NP_964069.1 CDS ubiE NC_005362.1 74904 75638 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 74904..75638 Lactobacillus johnsonii NCC 533 2742113 NP_964070.1 CDS LJ0054 NC_005362.1 75671 76585 D prolinase PepPN 75671..76585 Lactobacillus johnsonii NCC 533 2743721 NP_964071.1 CDS LJ0055 NC_005362.1 76704 77315 D hypothetical protein 76704..77315 Lactobacillus johnsonii NCC 533 2743023 NP_964072.1 CDS LJ0056 NC_005362.1 77465 78415 R conjugated bile salt hydrolase complement(77465..78415) Lactobacillus johnsonii NCC 533 2743142 NP_964073.1 CDS LJ0057 NC_005362.1 78431 79786 R bile salt transporter complement(78431..79786) Lactobacillus johnsonii NCC 533 2743687 NP_964074.1 CDS LJ0058 NC_005362.1 79810 81168 R bile salt transporter complement(79810..81168) Lactobacillus johnsonii NCC 533 2742013 NP_964075.1 CDS LJ0059 NC_005362.1 81470 82330 R contains acyltransferase domain; hypothetical protein complement(81470..82330) Lactobacillus johnsonii NCC 533 2742479 NP_964076.1 CDS LJ0060 NC_005362.1 82327 83277 R contains glycosyl transferase family 8 domain; hypothetical protein complement(82327..83277) Lactobacillus johnsonii NCC 533 2743186 NP_964077.1 CDS LJ0061 NC_005362.1 83290 84240 R contains glycosyl transferase family 8 domain; hypothetical protein complement(83290..84240) Lactobacillus johnsonii NCC 533 2742562 NP_964078.1 CDS LJ0062 NC_005362.1 84266 85090 R contains glycosyl transferase family 8 domain; hypothetical protein complement(84266..85090) Lactobacillus johnsonii NCC 533 2743140 NP_964079.1 CDS LJ0063 NC_005362.1 85092 85868 R hypothetical protein complement(85092..85868) Lactobacillus johnsonii NCC 533 2742187 NP_964080.1 CDS LJ0064 NC_005362.1 86234 87511 D transposase 86234..87511 Lactobacillus johnsonii NCC 533 2742864 NP_964081.1 CDS LJ0065 NC_005362.1 87816 88523 D two-component regulatory system response regulator 87816..88523 Lactobacillus johnsonii NCC 533 2743332 NP_964082.1 CDS LJ0066 NC_005362.1 88570 90420 D two-component regulatory system histidine kinase 88570..90420 Lactobacillus johnsonii NCC 533 2743259 NP_964083.1 CDS LJ0067 NC_005362.1 90410 91738 D hypothetical protein 90410..91738 Lactobacillus johnsonii NCC 533 2742147 NP_964084.1 CDS LJ0068 NC_005362.1 91728 92549 D hypothetical protein 91728..92549 Lactobacillus johnsonii NCC 533 2743414 NP_964085.1 CDS LJ0069 NC_005362.1 92555 93352 D contains metallo-beta-lactamase superfamily region; hypothetical protein 92555..93352 Lactobacillus johnsonii NCC 533 2743008 NP_964086.1 CDS LJ0070 NC_005362.1 93436 94656 D serine protease do-like HtrA 93436..94656 Lactobacillus johnsonii NCC 533 2741926 NP_964087.1 CDS LJ0071 NC_005362.1 95167 95646 D contains DUF163 domain; SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 95167..95646 Lactobacillus johnsonii NCC 533 2742300 NP_964088.1 CDS LJ0072 NC_005362.1 95647 96300 R ABC transporter permease component complement(95647..96300) Lactobacillus johnsonii NCC 533 2742027 NP_964089.1 CDS LJ0073 NC_005362.1 96312 97658 R ABC transporter ATPase component complement(96312..97658) Lactobacillus johnsonii NCC 533 2743430 NP_964090.1 CDS LJ0074 NC_005362.1 97633 98196 R hypothetical protein complement(97633..98196) Lactobacillus johnsonii NCC 533 2742913 NP_964091.1 CDS LJ0075 NC_005362.1 98433 99359 D contains transcriptional regulator helix-turn-helix domain, araC family; hypothetical protein 98433..99359 Lactobacillus johnsonii NCC 533 2742899 NP_964092.1 CDS LJ0076 NC_005362.1 99394 100284 R putative metalloprotease; heat shock protein HtpX complement(99394..100284) Lactobacillus johnsonii NCC 533 2743070 NP_964093.1 CDS LJ0077 NC_005362.1 100293 100850 R LemA-like protein complement(100293..100850) Lactobacillus johnsonii NCC 533 2741970 NP_964094.1 CDS LJ0078 NC_005362.1 100966 102060 R hypothetical protein complement(100966..102060) Lactobacillus johnsonii NCC 533 2742269 NP_964095.1 CDS LJ0079 NC_005362.1 102236 102646 D hypothetical protein 102236..102646 Lactobacillus johnsonii NCC 533 2743763 NP_964096.1 CDS LJ0080 NC_005362.1 103041 103571 D hypothetical protein 103041..103571 Lactobacillus johnsonii NCC 533 2743330 NP_964097.1 CDS LJ0081 NC_005362.1 104036 105343 D contains glycosyl transferase family 2 region; hypothetical protein 104036..105343 Lactobacillus johnsonii NCC 533 2743270 NP_964098.1 CDS LJ0082 NC_005362.1 105353 106477 D contains glycosyl transferase family 8 region; hypothetical protein 105353..106477 Lactobacillus johnsonii NCC 533 2743487 NP_964099.1 CDS LJ0083 NC_005362.1 106592 107236 D hypothetical protein 106592..107236 Lactobacillus johnsonii NCC 533 2741876 NP_964100.1 CDS LJ0084 NC_005362.1 107238 108167 D contains HNH site-specific endonuclease domain; hypothetical protein 107238..108167 Lactobacillus johnsonii NCC 533 2742748 NP_964101.1 CDS LJ0085 NC_005362.1 108250 108516 R hypothetical protein complement(108250..108516) Lactobacillus johnsonii NCC 533 2742673 NP_964102.1 CDS LJ0086 NC_005362.1 108770 109528 R ABC transporter ATPase component complement(108770..109528) Lactobacillus johnsonii NCC 533 2742970 NP_964103.1 CDS LJ0087 NC_005362.1 109518 111131 R ABC transporter permease component complement(109518..111131) Lactobacillus johnsonii NCC 533 2743082 NP_964104.1 CDS LJ0088 NC_005362.1 111467 112093 R 3-methyladenine DNA glycosylase complement(111467..112093) Lactobacillus johnsonii NCC 533 2742464 NP_964105.1 CDS LJ0089 NC_005362.1 112170 112532 D hypothetical protein 112170..112532 Lactobacillus johnsonii NCC 533 2742375 NP_964106.1 CDS LJ0090 NC_005362.1 112529 113311 R contains membrane protein TerC domain; hypothetical protein complement(112529..113311) Lactobacillus johnsonii NCC 533 2743638 NP_964107.1 CDS LJ0091 NC_005362.1 113298 113534 R methylated DNA-protein cysteine methyltransferase DNA binding subunit complement(113298..113534) Lactobacillus johnsonii NCC 533 2742694 NP_964108.1 CDS LJ0092 NC_005362.1 113494 113829 R methylated DNA-protein cysteine methyltransferase ribonuclease-like subunit complement(113494..113829) Lactobacillus johnsonii NCC 533 2742225 NP_964109.1 CDS LJ0093 NC_005362.1 113946 114659 R contains SIR2 domain; Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(113946..114659) Lactobacillus johnsonii NCC 533 2743545 NP_964110.1 CDS LJ0094 NC_005362.1 114786 115262 D hypothetical protein 114786..115262 Lactobacillus johnsonii NCC 533 2743210 NP_964111.1 CDS LJ0095 NC_005362.1 115330 116799 R cardiolipinsynthetase complement(115330..116799) Lactobacillus johnsonii NCC 533 2742014 NP_964112.1 CDS LJ0096 NC_005362.1 116804 117511 R contains zinc protease domain; hypothetical protein complement(116804..117511) Lactobacillus johnsonii NCC 533 2743374 NP_964113.1 CDS LJ0097 NC_005362.1 117535 118461 R hypothetical protein complement(117535..118461) Lactobacillus johnsonii NCC 533 2742077 NP_964114.1 CDS LJ0098 NC_005362.1 118550 119281 D contains RNase H domain; hypothetical protein 118550..119281 Lactobacillus johnsonii NCC 533 2742623 NP_964115.1 CDS LJ0099 NC_005362.1 119742 120710 R hypothetical protein complement(119742..120710) Lactobacillus johnsonii NCC 533 2741866 NP_964116.1 CDS LJ0100 NC_005362.1 120833 121663 D contains glycosyl transferase family 2 region; hypothetical protein 120833..121663 Lactobacillus johnsonii NCC 533 2743098 NP_964117.1 CDS LJ0101 NC_005362.1 121688 122350 D contains alpha/beta hydrolase fold domain; hypothetical protein 121688..122350 Lactobacillus johnsonii NCC 533 2741910 NP_964118.1 CDS LJ0102 NC_005362.1 122437 122799 D hypothetical protein 122437..122799 Lactobacillus johnsonii NCC 533 2743628 NP_964119.1 CDS LJ0103 NC_005362.1 122882 123871 D phosphoribosylpyrophosphate synthetase 122882..123871 Lactobacillus johnsonii NCC 533 2743683 NP_964120.1 CDS LJ0104 NC_005362.1 124168 125523 D amino acid permease 124168..125523 Lactobacillus johnsonii NCC 533 2743692 NP_964121.1 CDS LJ0105 NC_005362.1 125688 126347 D contains bacterial regulatory protein tetR domain; hypothetical protein 125688..126347 Lactobacillus johnsonii NCC 533 2743286 NP_964122.1 CDS LJ0106 NC_005362.1 126670 127209 D hypothetical protein 126670..127209 Lactobacillus johnsonii NCC 533 2742779 NP_964123.1 CDS LJ0107 NC_005362.1 127496 129022 R hypothetical protein complement(127496..129022) Lactobacillus johnsonii NCC 533 2743367 NP_964124.1 CDS ddl NC_005362.1 129182 130267 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 129182..130267 Lactobacillus johnsonii NCC 533 2743323 NP_964125.1 CDS LJ0109 NC_005362.1 130297 131013 D contains chromosome segregation ATPase domain; hypothetical protein 130297..131013 Lactobacillus johnsonii NCC 533 2743301 NP_964126.1 CDS LJ0110 NC_005362.1 131046 132617 R contains sodium/hydrogen exchanger family domain; hypothetical protein complement(131046..132617) Lactobacillus johnsonii NCC 533 2743191 NP_964127.1 CDS LJ0111 NC_005362.1 132722 133390 D hypothetical protein 132722..133390 Lactobacillus johnsonii NCC 533 2742725 NP_964128.1 CDS LJ0112 NC_005362.1 133353 133829 D hypothetical protein 133353..133829 Lactobacillus johnsonii NCC 533 2741853 NP_964129.1 CDS LJ0113 NC_005362.1 133826 134587 D hypothetical protein 133826..134587 Lactobacillus johnsonii NCC 533 2742823 NP_964130.1 CDS LJ0114 NC_005362.1 134610 135428 D contains acetyl esterase domain; hypothetical protein 134610..135428 Lactobacillus johnsonii NCC 533 2742879 NP_964131.1 CDS LJ0115 NC_005362.1 135510 138569 R contains glycosyl hydrolases family 31 domain; hypothetical protein complement(135510..138569) Lactobacillus johnsonii NCC 533 2743194 NP_964132.1 CDS LJ0116 NC_005362.1 138729 139445 D contains bacterial regulatory gntR domain; hypothetical protein 138729..139445 Lactobacillus johnsonii NCC 533 2742483 NP_964133.1 CDS LJ0117 NC_005362.1 139466 140632 D putative tagatose-6-phosphate ketose/aldose isomerase 139466..140632 Lactobacillus johnsonii NCC 533 2742404 NP_964134.1 CDS LJ0118 NC_005362.1 140694 141851 D contains N-acetylglucosamine-6-phosphate deacetylase domain; hypothetical protein 140694..141851 Lactobacillus johnsonii NCC 533 2741852 NP_964135.1 CDS LJ0119 NC_005362.1 141989 142477 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, mannose specific 141989..142477 Lactobacillus johnsonii NCC 533 2742048 NP_964136.1 CDS LJ0120 NC_005362.1 142489 143406 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific 142489..143406 Lactobacillus johnsonii NCC 533 2742012 NP_964137.1 CDS LJ0121 NC_005362.1 143396 144211 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, mannose specific 143396..144211 Lactobacillus johnsonii NCC 533 2743452 NP_964138.1 CDS LJ0122 NC_005362.1 144235 144633 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific 144235..144633 Lactobacillus johnsonii NCC 533 2742193 NP_964139.1 CDS LJ0123 NC_005362.1 144789 145985 D hypothetical protein 144789..145985 Lactobacillus johnsonii NCC 533 2743566 NP_964140.1 CDS LJ0124 NC_005362.1 146032 146481 R nucleoside 2-deoxyribosyltransferase complement(146032..146481) Lactobacillus johnsonii NCC 533 2743002 NP_964141.1 CDS LJ0125 NC_005362.1 146508 147155 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, galactitol/fructose specific 146508..147155 Lactobacillus johnsonii NCC 533 2743212 NP_964142.1 CDS LJ0126 NC_005362.1 147200 147925 R contains bacterial regulatory gntR domain; hypothetical protein complement(147200..147925) Lactobacillus johnsonii NCC 533 2743060 NP_964143.1 CDS LJ0127 NC_005362.1 147934 148737 R contains protein tyrosine/serine phosphatase domain; hypothetical protein complement(147934..148737) Lactobacillus johnsonii NCC 533 2743643 NP_964144.1 CDS LJ0128 NC_005362.1 148911 149405 D universal stress protein family region; hypothetical protein 148911..149405 Lactobacillus johnsonii NCC 533 2743478 NP_964145.1 CDS LJ0129 NC_005362.1 149805 150737 D similar to phosphonates solute-binding protein; hypothetical protein 149805..150737 Lactobacillus johnsonii NCC 533 2743021 NP_964146.1 CDS LJ0130 NC_005362.1 150845 151630 D phosphate/phosphonate ABC transporter ATPase component 150845..151630 Lactobacillus johnsonii NCC 533 2742626 NP_964147.1 CDS LJ0131 NC_005362.1 151623 152426 D phosphate/phosphonate ABC transporter permease component 151623..152426 Lactobacillus johnsonii NCC 533 2741871 NP_964148.1 CDS LJ0132 NC_005362.1 152426 153238 D phosphate/phosphonate ABC transporter permease component 152426..153238 Lactobacillus johnsonii NCC 533 2742150 NP_964149.1 CDS LJ0133 NC_005362.1 153391 153873 D hypothetical protein 153391..153873 Lactobacillus johnsonii NCC 533 2743353 NP_964150.1 CDS LJ0134 NC_005362.1 153926 155320 D hypothetical protein 153926..155320 Lactobacillus johnsonii NCC 533 2742588 NP_964151.1 CDS LJ0135 NC_005362.1 155381 157330 D asparagine synthase 155381..157330 Lactobacillus johnsonii NCC 533 2743544 NP_964152.1 CDS LJ0136 NC_005362.1 157360 158691 D hypothetical protein 157360..158691 Lactobacillus johnsonii NCC 533 2742050 NP_964153.1 CDS LJ0137 NC_005362.1 158901 161111 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 158901..161111 Lactobacillus johnsonii NCC 533 2743610 NP_964154.1 CDS LJ0138 NC_005362.1 161111 161824 D anaerobic ribonucleoside-triphosphate reductase activating protein 161111..161824 Lactobacillus johnsonii NCC 533 2743415 NP_964155.1 CDS LJ0139 NC_005362.1 161879 162469 D contains DUF59 domain; hypothetical protein 161879..162469 Lactobacillus johnsonii NCC 533 2742406 NP_964156.1 CDS LJ0140 NC_005362.1 162469 163665 D hypothetical protein 162469..163665 Lactobacillus johnsonii NCC 533 2743634 NP_964157.1 CDS LJ0141 NC_005362.1 163769 164986 D major facilitator superfamily permease 163769..164986 Lactobacillus johnsonii NCC 533 2742069 NP_964158.1 CDS LJ0142 NC_005362.1 165105 166100 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 165105..166100 Lactobacillus johnsonii NCC 533 2741893 NP_964159.1 CDS LJ0143 NC_005362.1 166235 169183 D hypothetical protein 166235..169183 Lactobacillus johnsonii NCC 533 2743612 NP_964160.1 CDS LJ0144 NC_005362.1 169257 170015 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(169257..170015) Lactobacillus johnsonii NCC 533 2742821 NP_964161.1 CDS LJ0145 NC_005362.1 170137 171063 D fructose-1-phosphate kinase 170137..171063 Lactobacillus johnsonii NCC 533 2742405 NP_964162.1 CDS LJ0146 NC_005362.1 171081 173018 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, fructose specific 171081..173018 Lactobacillus johnsonii NCC 533 2743650 NP_964163.1 CDS LJ0147 NC_005362.1 173133 175082 D endopeptidase O 173133..175082 Lactobacillus johnsonii NCC 533 2742930 NP_964164.1 CDS LJ0148 NC_005362.1 175224 176930 D hypothetical protein 175224..176930 Lactobacillus johnsonii NCC 533 2743242 NP_964165.1 CDS LJ0149 NC_005362.1 177128 178786 D contains phosphoenolpyruvate carboxykinase domain; hypothetical protein 177128..178786 Lactobacillus johnsonii NCC 533 2742372 NP_964166.1 CDS LJ0150 NC_005362.1 178883 180934 R contains K+ potassium transporter domain; hypothetical protein complement(178883..180934) Lactobacillus johnsonii NCC 533 2742205 NP_964167.1 CDS LJ0151 NC_005362.1 181083 183080 R contains K+ potassium transporter domain; hypothetical protein complement(181083..183080) Lactobacillus johnsonii NCC 533 2743517 NP_964168.1 CDS LJ0152 NC_005362.1 183220 183639 R hypothetical protein complement(183220..183639) Lactobacillus johnsonii NCC 533 2742785 NP_964169.1 CDS LJ0153 NC_005362.1 183726 184790 R contains TPR-repeat domain; hypothetical protein complement(183726..184790) Lactobacillus johnsonii NCC 533 2743551 NP_964170.1 CDS LJ0154 NC_005362.1 185219 185458 D hypothetical protein 185219..185458 Lactobacillus johnsonii NCC 533 2742331 NP_964171.1 CDS LJ0155 NC_005362.1 185662 187758 D contains mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain; hypothetical protein 185662..187758 Lactobacillus johnsonii NCC 533 2742169 NP_964172.1 CDS LJ0156 NC_005362.1 187813 189360 D contains glycosyl hydrolases family 25 domain; hypothetical protein 187813..189360 Lactobacillus johnsonii NCC 533 2743012 NP_964173.1 CDS LJ0157 NC_005362.1 189311 189982 D hypothetical protein 189311..189982 Lactobacillus johnsonii NCC 533 2743018 NP_964174.1 CDS LJ0158 NC_005362.1 190093 190905 D contains pfkB family carbohydrate kinase domain; hypothetical protein 190093..190905 Lactobacillus johnsonii NCC 533 2743507 NP_964175.1 CDS LJ0159 NC_005362.1 190992 192818 D contains potassium channel domain; hypothetical protein 190992..192818 Lactobacillus johnsonii NCC 533 2742923 NP_964176.1 CDS LJ0160 NC_005362.1 192860 193822 R contains oxidoreductase family, NAD-binding Rossmann domain; hypothetical protein complement(192860..193822) Lactobacillus johnsonii NCC 533 2741859 NP_964177.1 CDS LJ0161 NC_005362.1 193836 194618 R hypothetical protein complement(193836..194618) Lactobacillus johnsonii NCC 533 2743366 NP_964178.1 CDS LJ0162 NC_005362.1 194639 195466 R hypothetical protein complement(194639..195466) Lactobacillus johnsonii NCC 533 2743729 NP_964179.1 CDS LJ0163 NC_005362.1 195552 195974 R hypothetical protein complement(195552..195974) Lactobacillus johnsonii NCC 533 2742819 NP_964180.1 CDS gpmA NC_005362.1 196136 196828 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 196136..196828 Lactobacillus johnsonii NCC 533 2742757 NP_964181.1 CDS LJ0165 NC_005362.1 196894 197175 D hypothetical protein 196894..197175 Lactobacillus johnsonii NCC 533 2741952 NP_964182.1 CDS LJ0166 NC_005362.1 197771 198028 R 30S ribosomal protein S14-3 complement(197771..198028) Lactobacillus johnsonii NCC 533 2742239 NP_964183.1 CDS LJ0167 NC_005362.1 198212 198649 D hypothetical protein 198212..198649 Lactobacillus johnsonii NCC 533 2741933 NP_964184.1 CDS LJ0168 NC_005362.1 198669 199601 D bactoprenol glucosyl transferase 198669..199601 Lactobacillus johnsonii NCC 533 2741950 NP_964185.1 CDS LJ0169 NC_005362.1 199839 200552 D hypothetical protein 199839..200552 Lactobacillus johnsonii NCC 533 2742388 NP_964186.1 CDS LJ0170 NC_005362.1 200624 201487 D contains integral membrane protein DUF6 domain; hypothetical protein 200624..201487 Lactobacillus johnsonii NCC 533 2742196 NP_964187.1 CDS LJ0171 NC_005362.1 201778 202659 D similar to uncharacterized enzymes related to aldose 1-epimerase; hypothetical protein 201778..202659 Lactobacillus johnsonii NCC 533 2741969 NP_964188.1 CDS LJ0172 NC_005362.1 202788 203897 D similar to transcriptional regulator lytR; hypothetical protein 202788..203897 Lactobacillus johnsonii NCC 533 2743627 NP_964189.1 CDS LJ0173 NC_005362.1 203897 204517 D contains DUF205 domain; membrane protein 203897..204517 Lactobacillus johnsonii NCC 533 2742106 NP_964190.1 CDS LJ0174 NC_005362.1 204514 207447 D hypothetical protein 204514..207447 Lactobacillus johnsonii NCC 533 2742123 NP_964191.1 CDS LJ0175 NC_005362.1 207687 208967 D tyrosyl-tRNA synthetase 207687..208967 Lactobacillus johnsonii NCC 533 2742997 NP_964192.1 CDS LJ0176 NC_005362.1 209216 210529 D aminopeptidase C 209216..210529 Lactobacillus johnsonii NCC 533 2743324 NP_964193.1 CDS LJ0177 NC_005362.1 210545 211198 D contains HD superfamily hydrolase domain; hypothetical protein 210545..211198 Lactobacillus johnsonii NCC 533 2743141 NP_964194.1 CDS LJ0178 NC_005362.1 211269 212579 R aminopeptidase C complement(211269..212579) Lactobacillus johnsonii NCC 533 2742687 NP_964195.1 CDS LJ0179 NC_005362.1 212742 213365 D hypothetical protein 212742..213365 Lactobacillus johnsonii NCC 533 2743216 NP_964196.1 CDS greA NC_005362.1 213365 213826 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 213365..213826 Lactobacillus johnsonii NCC 533 2743274 NP_964197.1 CDS LJ0181 NC_005362.1 213872 214321 R contains Hsp20/alpha crystallin domain; hypothetical protein complement(213872..214321) Lactobacillus johnsonii NCC 533 2743593 NP_964198.1 CDS LJ0182 NC_005362.1 214451 215899 R 6-phospho-beta-glucosidase complement(214451..215899) Lactobacillus johnsonii NCC 533 2743722 NP_964199.1 CDS LJ0183 NC_005362.1 216097 216594 D hypothetical protein 216097..216594 Lactobacillus johnsonii NCC 533 2742782 NP_964200.1 CDS celD NC_005362.1 216617 217969 D required for cellobiose uptake and metabolism; cellobiose phosphotransferase system IIC component 216617..217969 Lactobacillus johnsonii NCC 533 2743088 NP_964201.1 CDS LJ0185 NC_005362.1 218045 218743 D contains bacterial regulatory gntR domain; hypothetical protein 218045..218743 Lactobacillus johnsonii NCC 533 2743352 NP_964202.1 CDS LJ0186 NC_005362.1 218844 220121 R transposase complement(218844..220121) Lactobacillus johnsonii NCC 533 2743356 NP_964203.1 CDS LJ0187 NC_005362.1 220263 220670 R hypothetical protein complement(220263..220670) Lactobacillus johnsonii NCC 533 2743440 NP_964204.1 CDS LJ0188 NC_005362.1 220742 222235 R 6-phospho-beta-glucosidase complement(220742..222235) Lactobacillus johnsonii NCC 533 2742480 NP_964205.1 CDS LJ0189 NC_005362.1 222302 223027 R contains bacterial regulatory gntR domain; hypothetical protein complement(222302..223027) Lactobacillus johnsonii NCC 533 2742384 NP_964206.1 CDS LJ0190 NC_005362.1 223027 223353 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, cellobiose specific complement(223027..223353) Lactobacillus johnsonii NCC 533 2742854 NP_964207.1 CDS LJ0191 NC_005362.1 223447 223695 R hypothetical protein complement(223447..223695) Lactobacillus johnsonii NCC 533 2741894 NP_964208.1 CDS LJ0192 NC_005362.1 223700 224023 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, cellobiose specific complement(223700..224023) Lactobacillus johnsonii NCC 533 2743448 NP_964209.1 CDS LJ0193 NC_005362.1 224170 225600 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific complement(224170..225600) Lactobacillus johnsonii NCC 533 2743598 NP_964210.1 CDS LJ0194 NC_005362.1 225600 226979 R beta-glucosidase complement(225600..226979) Lactobacillus johnsonii NCC 533 2743569 NP_964211.1 CDS LJ0195 NC_005362.1 227182 228042 R contains bacterial regulatory ROK domain; hypothetical protein complement(227182..228042) Lactobacillus johnsonii NCC 533 2743429 NP_964212.1 CDS LJ0196 NC_005362.1 228185 228847 D hypothetical protein 228185..228847 Lactobacillus johnsonii NCC 533 2743547 NP_964213.1 CDS LJ0197 NC_005362.1 228988 229599 R contains DUF159 domain; hypothetical protein complement(228988..229599) Lactobacillus johnsonii NCC 533 2741984 NP_964214.1 CDS LJ0198 NC_005362.1 229734 230762 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 229734..230762 Lactobacillus johnsonii NCC 533 2742540 NP_964215.1 CDS LJ0199 NC_005362.1 230782 231270 D ComE operon protein 2. 230782..231270 Lactobacillus johnsonii NCC 533 2741921 NP_964216.1 CDS LJ0200 NC_005362.1 231260 231847 D hypothetical protein 231260..231847 Lactobacillus johnsonii NCC 533 2743698 NP_964217.1 CDS LJ0201 NC_005362.1 232146 233177 D contains E1-E2 ATPase domain; hypothetical protein 232146..233177 Lactobacillus johnsonii NCC 533 2742144 NP_964218.1 CDS LJ0202 NC_005362.1 233275 235251 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 233275..235251 Lactobacillus johnsonii NCC 533 2742206 NP_964219.1 CDS LJ0203 NC_005362.1 235251 236024 D contains TatD-related DNase domain; hypothetical protein 235251..236024 Lactobacillus johnsonii NCC 533 2743136 NP_964220.1 CDS LJ0204 NC_005362.1 236008 236571 D contains toprim domain; hypothetical protein 236008..236571 Lactobacillus johnsonii NCC 533 2742332 NP_964221.1 CDS ksgA NC_005362.1 236561 237451 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 236561..237451 Lactobacillus johnsonii NCC 533 2743134 NP_964222.1 CDS LJ0206 NC_005362.1 237527 237766 D veg protein 237527..237766 Lactobacillus johnsonii NCC 533 2742662 NP_964223.1 CDS LJ0207 NC_005362.1 237884 238720 D contains phosphoribosyl transferase domain; pur operon repressor 237884..238720 Lactobacillus johnsonii NCC 533 2743516 NP_964224.1 CDS glmU NC_005362.1 238768 240153 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 238768..240153 Lactobacillus johnsonii NCC 533 2742681 NP_964225.1 CDS LJ0209 NC_005362.1 240264 241235 D ribose-phosphate pyrophosphokinase 240264..241235 Lactobacillus johnsonii NCC 533 2742473 NP_964226.1 CDS LJ0210 NC_005362.1 241388 242332 D contains bacterial regulatory lacI domain; hypothetical protein 241388..242332 Lactobacillus johnsonii NCC 533 2743496 NP_964227.1 CDS LJ0211 NC_005362.1 242437 244092 D contains alpha amylase catalytic domain; hypothetical protein 242437..244092 Lactobacillus johnsonii NCC 533 2742842 NP_964228.1 CDS LJ0212 NC_005362.1 244112 245836 D maltogenic amylase or neopullulanase 244112..245836 Lactobacillus johnsonii NCC 533 2742827 NP_964229.1 CDS LJ0213 NC_005362.1 245988 248261 D maltose phosphorylase 245988..248261 Lactobacillus johnsonii NCC 533 2742023 NP_964230.1 CDS LJ0214 NC_005362.1 248246 248908 D beta-phosphoglucomutase 248246..248908 Lactobacillus johnsonii NCC 533 2742631 NP_964231.1 CDS LJ0215 NC_005362.1 248929 250032 D multiple sugar ABC transporter ATPase component 248929..250032 Lactobacillus johnsonii NCC 533 2742634 NP_964232.1 CDS LJ0216 NC_005362.1 250144 251361 D contains bacterial extracellular solute-binding domain; hypothetical protein 250144..251361 Lactobacillus johnsonii NCC 533 2743539 NP_964233.1 CDS LJ0217 NC_005362.1 251398 252753 D multiple sugar ABC transporter permease component 251398..252753 Lactobacillus johnsonii NCC 533 2742561 NP_964234.1 CDS LJ0219 NC_005362.1 252756 253613 D multiple sugar ABC transporter permease component 252756..253613 Lactobacillus johnsonii NCC 533 2742209 NP_964235.1 CDS LJ0220 NC_005362.1 253689 255305 D glucan 1,6-alpha-glucosidase 253689..255305 Lactobacillus johnsonii NCC 533 2742335 NP_964236.1 CDS LJ0221 NC_005362.1 255343 256707 R contains HD domain; hypothetical protein complement(255343..256707) Lactobacillus johnsonii NCC 533 2742750 NP_964237.1 CDS LJ0222 NC_005362.1 256802 257239 D hypothetical protein 256802..257239 Lactobacillus johnsonii NCC 533 2742751 NP_964238.1 CDS LJ0223 NC_005362.1 257288 257830 D participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 257288..257830 Lactobacillus johnsonii NCC 533 2741925 NP_964239.1 CDS pyrG NC_005362.1 257960 259582 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 257960..259582 Lactobacillus johnsonii NCC 533 2741936 NP_964240.1 CDS LJ0225 NC_005362.1 259714 260979 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 259714..260979 Lactobacillus johnsonii NCC 533 2742976 NP_964241.1 CDS LJ0226 NC_005362.1 261071 262399 R xanthine/uracil permease complement(261071..262399) Lactobacillus johnsonii NCC 533 2742868 NP_964242.1 CDS LJ0227 NC_005362.1 262400 262978 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(262400..262978) Lactobacillus johnsonii NCC 533 2742858 NP_964243.1 CDS LJ0228 NC_005362.1 263190 263966 R hypothetical protein complement(263190..263966) Lactobacillus johnsonii NCC 533 2741980 NP_964244.1 CDS guaA NC_005362.1 264154 265707 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 264154..265707 Lactobacillus johnsonii NCC 533 2743518 NP_964245.1 CDS LJ0230 NC_005362.1 265991 266290 D arsenical resistance operon repressor 265991..266290 Lactobacillus johnsonii NCC 533 2743590 NP_964246.1 CDS LJ0231 NC_005362.1 266364 267401 D contains sodium bile acid symporter domain; hypothetical protein 266364..267401 Lactobacillus johnsonii NCC 533 2742679 NP_964247.1 CDS LJ0232 NC_005362.1 267401 267802 D arsenate reductase 267401..267802 Lactobacillus johnsonii NCC 533 2743354 NP_964248.1 CDS LJ0233 NC_005362.1 268355 268588 D hypothetical protein 268355..268588 Lactobacillus johnsonii NCC 533 2742063 NP_964249.1 CDS LJ0234 NC_005362.1 268614 269132 D hypothetical protein 268614..269132 Lactobacillus johnsonii NCC 533 2742020 NP_964250.1 CDS LJ0234b NC_005362.1 269219 269422 D hypothetical protein 269219..269422 Lactobacillus johnsonii NCC 533 2742025 NP_964251.1 CDS LJ0235 NC_005362.1 269423 269806 D hypothetical protein 269423..269806 Lactobacillus johnsonii NCC 533 2742001 NP_964252.1 CDS LJ0236 NC_005362.1 269849 270670 D contains phage integrase domain; hypothetical protein 269849..270670 Lactobacillus johnsonii NCC 533 2742152 NP_964253.1 CDS LJ0237 NC_005362.1 270804 271196 R hypothetical protein complement(270804..271196) Lactobacillus johnsonii NCC 533 2742656 NP_964254.1 CDS LJ0238 NC_005362.1 271401 272033 D contains bacterial regulatory protein tetR domain; hypothetical protein 271401..272033 Lactobacillus johnsonii NCC 533 2741911 NP_964255.1 CDS LJ0239 NC_005362.1 272194 272703 D hypothetical protein 272194..272703 Lactobacillus johnsonii NCC 533 2742794 NP_964256.1 CDS LJ0240 NC_005362.1 273128 274153 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(273128..274153) Lactobacillus johnsonii NCC 533 2742777 NP_964257.1 CDS LJ0241 NC_005362.1 274192 274788 R contains NAD(P)H dehydrogenase (quinone) domain; hypothetical protein complement(274192..274788) Lactobacillus johnsonii NCC 533 2743015 NP_964258.1 CDS LJ0242 NC_005362.1 274790 275323 R contains bacterial regulatory protein tetR domain; hypothetical protein complement(274790..275323) Lactobacillus johnsonii NCC 533 2743123 NP_964259.1 CDS LJ0243 NC_005362.1 275534 275947 D hypothetical protein 275534..275947 Lactobacillus johnsonii NCC 533 2743322 NP_964260.1 CDS LJ0244 NC_005362.1 276509 277663 D hypothetical protein 276509..277663 Lactobacillus johnsonii NCC 533 2743020 NP_964261.1 CDS LJ0245 NC_005362.1 277846 278691 D ABC transporter ATPase component 277846..278691 Lactobacillus johnsonii NCC 533 2743188 NP_964262.1 CDS LJ0246 NC_005362.1 278691 279557 D hypothetical protein 278691..279557 Lactobacillus johnsonii NCC 533 2743157 NP_964263.1 CDS LJ0247 NC_005362.1 279547 279996 D hypothetical protein 279547..279996 Lactobacillus johnsonii NCC 533 2743221 NP_964264.1 CDS LJ0248 NC_005362.1 279998 280387 D hypothetical protein 279998..280387 Lactobacillus johnsonii NCC 533 2742057 NP_964265.1 CDS LJ0249 NC_005362.1 280412 280915 D contains acetyltransferase (GNAT) domain; hypothetical protein 280412..280915 Lactobacillus johnsonii NCC 533 2742079 NP_964266.1 CDS LJ0249b NC_005362.1 280973 281113 D possible metallothionein; hypothetical protein 280973..281113 Lactobacillus johnsonii NCC 533 2743439 NP_964267.1 CDS LJ0250 NC_005362.1 281182 282180 R contains zinc-binding dehydrogenase domain; hypothetical protein complement(281182..282180) Lactobacillus johnsonii NCC 533 2742458 NP_964268.1 CDS LJ0251 NC_005362.1 282158 282607 R contains UPF0074 domain; hypothetical protein complement(282158..282607) Lactobacillus johnsonii NCC 533 2743433 NP_964269.1 CDS LJ0252 NC_005362.1 282916 283404 D methylated DNA-protein cysteine methyltransferase 282916..283404 Lactobacillus johnsonii NCC 533 2742619 NP_964270.1 CDS LJ0253 NC_005362.1 284067 284582 R hypothetical protein complement(284067..284582) Lactobacillus johnsonii NCC 533 2743349 NP_964271.1 CDS LJ0254 NC_005362.1 284895 285155 D hypothetical protein 284895..285155 Lactobacillus johnsonii NCC 533 2743520 NP_964272.1 CDS LJ0255 NC_005362.1 285202 285915 R hypothetical protein complement(285202..285915) Lactobacillus johnsonii NCC 533 2743091 NP_964273.1 CDS LJ0256 NC_005362.1 286002 286454 D hypothetical protein 286002..286454 Lactobacillus johnsonii NCC 533 2743567 NP_964274.1 CDS LJ0257 NC_005362.1 286574 287332 R nitro/flavin reductase complement(286574..287332) Lactobacillus johnsonii NCC 533 2743071 NP_964275.1 CDS LJ0258 NC_005362.1 287473 288888 R dipeptidase complement(287473..288888) Lactobacillus johnsonii NCC 533 2743205 NP_964276.1 CDS LJ0259 NC_005362.1 288966 289793 R raffinose operon transcriptional regulator complement(288966..289793) Lactobacillus johnsonii NCC 533 2743033 NP_964277.1 CDS LJ0260 NC_005362.1 290014 291975 D raffinose permease 290014..291975 Lactobacillus johnsonii NCC 533 2743193 NP_964278.1 CDS LJ0261 NC_005362.1 291959 294157 D alpha-galactosidase 291959..294157 Lactobacillus johnsonii NCC 533 2742754 NP_964279.1 CDS LJ0262 NC_005362.1 294169 295611 D sucrose phosphorylase 294169..295611 Lactobacillus johnsonii NCC 533 2742712 NP_964280.1 CDS glyA NC_005362.1 295759 296994 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 295759..296994 Lactobacillus johnsonii NCC 533 2742724 NP_964281.1 CDS LJ0264 NC_005362.1 297280 298272 D hypothetical protein 297280..298272 Lactobacillus johnsonii NCC 533 2742552 NP_964282.1 CDS LJ0265 NC_005362.1 298269 299168 D ABC transporter permease component 298269..299168 Lactobacillus johnsonii NCC 533 2742717 NP_964283.1 CDS LJ0266 NC_005362.1 299161 299925 D ABC transporter ATPase component 299161..299925 Lactobacillus johnsonii NCC 533 2743626 NP_964284.1 CDS LJ0267 NC_005362.1 300030 301628 D contains amino acid permease domain; hypothetical protein 300030..301628 Lactobacillus johnsonii NCC 533 2742641 NP_964285.1 CDS rpmE2 NC_005362.1 301745 301996 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 301745..301996 Lactobacillus johnsonii NCC 533 2742310 NP_964286.1 CDS LJ0269 NC_005362.1 302159 303526 D UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase 302159..303526 Lactobacillus johnsonii NCC 533 2743623 NP_964287.1 CDS LJ0270 NC_005362.1 303542 304996 D RNA helicase 303542..304996 Lactobacillus johnsonii NCC 533 2742528 NP_964288.1 CDS acpS NC_005362.1 305072 305431 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 305072..305431 Lactobacillus johnsonii NCC 533 2743064 NP_964289.1 CDS LJ0272 NC_005362.1 305431 306561 D alanine racemase 305431..306561 Lactobacillus johnsonii NCC 533 2741906 NP_964290.1 CDS LJ0273 NC_005362.1 306626 307306 R hypothetical protein complement(306626..307306) Lactobacillus johnsonii NCC 533 2742861 NP_964291.1 CDS LJ0274 NC_005362.1 307453 308424 R L-lactate dehydrogenase complement(307453..308424) Lactobacillus johnsonii NCC 533 2742935 NP_964292.1 CDS LJ0275 NC_005362.1 308537 309586 R transposase complement(308537..309586) Lactobacillus johnsonii NCC 533 2742943 NP_964293.1 CDS LJ0276 NC_005362.1 309811 310368 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 309811..310368 Lactobacillus johnsonii NCC 533 2743083 NP_964294.1 CDS LJ0277 NC_005362.1 310370 313867 D transcription-repair coupling factor 310370..313867 Lactobacillus johnsonii NCC 533 2742905 NP_964295.1 CDS LJ0278 NC_005362.1 313885 314127 D contains S4 domain; hypothetical protein 313885..314127 Lactobacillus johnsonii NCC 533 2742789 NP_964296.1 CDS LJ0279 NC_005362.1 314216 314593 D hypothetical protein 314216..314593 Lactobacillus johnsonii NCC 533 2742281 NP_964297.1 CDS LJ0280 NC_005362.1 314593 314949 D contains S1 RNA binding domain; hypothetical protein 314593..314949 Lactobacillus johnsonii NCC 533 2743648 NP_964298.1 CDS LJ0281 NC_005362.1 314972 316267 D contains single-strand binding domain; hypothetical protein 314972..316267 Lactobacillus johnsonii NCC 533 2743288 NP_964299.1 CDS LJ0282 NC_005362.1 316351 318477 D cell division protein FtsH-like protein 316351..318477 Lactobacillus johnsonii NCC 533 2743608 NP_964300.1 CDS LJ0283 NC_005362.1 318548 321235 D hypothetical protein 318548..321235 Lactobacillus johnsonii NCC 533 2742450 NP_964301.1 CDS LJ0284 NC_005362.1 321298 323940 D hypothetical protein 321298..323940 Lactobacillus johnsonii NCC 533 2743434 NP_964302.1 CDS hslO NC_005362.1 323994 324869 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 323994..324869 Lactobacillus johnsonii NCC 533 2743435 NP_964303.1 CDS LJ0286 NC_005362.1 324929 325936 D contains UPF0034 domain; hypothetical protein 324929..325936 Lactobacillus johnsonii NCC 533 2742837 NP_964304.1 CDS lysS NC_005362.1 325951 327492 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 325951..327492 Lactobacillus johnsonii NCC 533 2742697 NP_964305.1 CDS LJ0288 NC_005362.1 327894 329069 R Lj965 prophage integrase complement(327894..329069) Lactobacillus johnsonii NCC 533 2743672 NP_964306.1 CDS LJ0289 NC_005362.1 329225 329749 R Lj965 prophage superinfection immunity protein complement(329225..329749) Lactobacillus johnsonii NCC 533 2743277 NP_964307.1 CDS LJ0290 NC_005362.1 329842 330372 R Lj965 prophage protein complement(329842..330372) Lactobacillus johnsonii NCC 533 2742302 NP_964308.1 CDS LJ0291 NC_005362.1 330483 331268 R Lj965 prophage protein complement(330483..331268) Lactobacillus johnsonii NCC 533 2743548 NP_964309.1 CDS LJ0292 NC_005362.1 331240 331698 R Lj965 prophage protein complement(331240..331698) Lactobacillus johnsonii NCC 533 2743173 NP_964310.1 CDS LJ0293 NC_005362.1 331779 332201 R Lj965 prophage repressor complement(331779..332201) Lactobacillus johnsonii NCC 533 2742470 NP_964311.1 CDS LJ0294 NC_005362.1 332205 332558 R Lj965 prophage repressor complement(332205..332558) Lactobacillus johnsonii NCC 533 2742787 NP_964312.1 CDS LJ0294b NC_005362.1 332731 332934 D Lj965 prophage Cro-repressor 332731..332934 Lactobacillus johnsonii NCC 533 2742733 NP_964313.1 CDS LJ0295 NC_005362.1 332972 333721 D Lj965 prophage antirepressor 332972..333721 Lactobacillus johnsonii NCC 533 2742431 NP_964314.1 CDS LJ0296 NC_005362.1 333733 334011 D Lj928 prophage protein 333733..334011 Lactobacillus johnsonii NCC 533 2741967 NP_964315.1 CDS LJ1452b NC_005362.1 334136 334345 D Lj928 prophage protein 334136..334345 Lactobacillus johnsonii NCC 533 2742278 NP_964316.1 CDS LJ0296b NC_005362.1 334342 334491 D Lj965 prophage protein 334342..334491 Lactobacillus johnsonii NCC 533 2743661 NP_964317.1 CDS LJ0297 NC_005362.1 334860 335225 D Lj965 prophage protein 334860..335225 Lactobacillus johnsonii NCC 533 2742534 NP_964318.1 CDS LJ0298 NC_005362.1 335237 336136 D Lj965 prophage protein 335237..336136 Lactobacillus johnsonii NCC 533 2743027 NP_964319.1 CDS LJ0299 NC_005362.1 336139 336975 D Lj965 prophage replication protein 336139..336975 Lactobacillus johnsonii NCC 533 2742891 NP_964320.1 CDS LJ0300 NC_005362.1 336985 337719 D Lj965 prophage replication protein 336985..337719 Lactobacillus johnsonii NCC 533 2742007 NP_964321.1 CDS LJ0301 NC_005362.1 337709 337993 D Lj965 prophage protein 337709..337993 Lactobacillus johnsonii NCC 533 2742324 NP_964322.1 CDS LJ0302 NC_005362.1 338129 338965 D Lj965 prophage antirepressor 338129..338965 Lactobacillus johnsonii NCC 533 2743306 NP_964323.1 CDS LJ0303 NC_005362.1 339360 339842 D Lj965 prophage protein 339360..339842 Lactobacillus johnsonii NCC 533 2741857 NP_964324.1 CDS LJ0304 NC_005362.1 341279 342334 D Lj965 prophage protein 341279..342334 Lactobacillus johnsonii NCC 533 2743264 NP_964325.1 CDS LJ0305 NC_005362.1 342312 342692 D Lj965 prophage protein 342312..342692 Lactobacillus johnsonii NCC 533 2742958 NP_964326.1 CDS LJ0306 NC_005362.1 342714 343310 D Lj965 prophage protein 342714..343310 Lactobacillus johnsonii NCC 533 2742567 NP_964327.1 CDS LJ0307 NC_005362.1 343363 344217 D Lj965 prophage terminase small subunit 343363..344217 Lactobacillus johnsonii NCC 533 2742256 NP_964328.1 CDS LJ0308 NC_005362.1 344204 345478 D Lj965 prophage terminase large subunit 344204..345478 Lactobacillus johnsonii NCC 533 2741890 NP_964329.1 CDS LJ0309 NC_005362.1 345494 346993 D Lj965 prophage portal protein 345494..346993 Lactobacillus johnsonii NCC 533 2743384 NP_964330.1 CDS LJ0310 NC_005362.1 346923 347210 D Lj965 prophage protein 346923..347210 Lactobacillus johnsonii NCC 533 2742177 NP_964331.1 CDS LJ0311 NC_005362.1 347217 348299 D Lj965 prophage minor head protein 347217..348299 Lactobacillus johnsonii NCC 533 2742701 NP_964332.1 CDS LJ0312 NC_005362.1 348454 349098 D Lj965 prophage scaffold protein 348454..349098 Lactobacillus johnsonii NCC 533 2743483 NP_964333.1 CDS LJ0313 NC_005362.1 349111 349476 D Lj965 prophage protein 349111..349476 Lactobacillus johnsonii NCC 533 2743718 NP_964334.1 CDS LJ0314 NC_005362.1 349497 350546 D Lj965 prophage major head protein 349497..350546 Lactobacillus johnsonii NCC 533 2742572 NP_964335.1 CDS LJ0315 NC_005362.1 350556 350873 D Lj965 prophage protein 350556..350873 Lactobacillus johnsonii NCC 533 2742836 NP_964336.1 CDS LJ0316 NC_005362.1 350870 351223 D Lj965 prophage protein 350870..351223 Lactobacillus johnsonii NCC 533 2741938 NP_964337.1 CDS LJ0317 NC_005362.1 351216 351764 D Lj965 prophage protein 351216..351764 Lactobacillus johnsonii NCC 533 2742004 NP_964338.1 CDS LJ0318 NC_005362.1 351765 352133 D Lj965 prophage protein 351765..352133 Lactobacillus johnsonii NCC 533 2741981 NP_964339.1 CDS LJ0319 NC_005362.1 352136 352615 D Lj965 prophage major tail protein 352136..352615 Lactobacillus johnsonii NCC 533 2743181 NP_964340.1 CDS LJ0320 NC_005362.1 352693 353103 D Lj965 prophage protein 352693..353103 Lactobacillus johnsonii NCC 533 2743614 NP_964341.1 CDS LJ0321 NC_005362.1 353196 353489 D Lj965 prophage protein 353196..353489 Lactobacillus johnsonii NCC 533 2742420 NP_964342.1 CDS LJ0322 NC_005362.1 353489 359554 D Lj965 prophage putative minor tail protein 353489..359554 Lactobacillus johnsonii NCC 533 2742925 NP_964343.1 CDS LJ0323 NC_005362.1 359572 359928 D Lj965 prophage protein 359572..359928 Lactobacillus johnsonii NCC 533 2743422 NP_964344.1 CDS LJ0324 NC_005362.1 359942 364816 D Lj965 prophage protein 359942..364816 Lactobacillus johnsonii NCC 533 2743068 NP_964345.1 CDS LJ0325 NC_005362.1 364948 365208 D Lj965 prophage protein 364948..365208 Lactobacillus johnsonii NCC 533 2743039 NP_964346.1 CDS LJ0326 NC_005362.1 365208 365615 D Lj965 prophage protein 365208..365615 Lactobacillus johnsonii NCC 533 2741994 NP_964347.1 CDS LJ0327 NC_005362.1 365625 365882 D Lj965 prophage protein 365625..365882 Lactobacillus johnsonii NCC 533 2742343 NP_964348.1 CDS LJ0328 NC_005362.1 365875 366222 D Lj965 prophage holin 365875..366222 Lactobacillus johnsonii NCC 533 2742095 NP_964349.1 CDS LJ0329 NC_005362.1 366215 367147 D Lj965 prophage lysin 366215..367147 Lactobacillus johnsonii NCC 533 2743543 NP_964350.1 CDS LJ0330 NC_005362.1 367573 367791 D Lj965 prophage protein 367573..367791 Lactobacillus johnsonii NCC 533 2742305 NP_964351.1 CDS LJ0331 NC_005362.1 368143 370611 D ATP-dependent Clp protease ATP-binding subunit clpA-like protein 368143..370611 Lactobacillus johnsonii NCC 533 2741877 NP_964352.1 CDS rpoB NC_005362.1 370819 374448 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 370819..374448 Lactobacillus johnsonii NCC 533 2742920 NP_964353.1 CDS LJ0333 NC_005362.1 374466 378140 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 374466..378140 Lactobacillus johnsonii NCC 533 2741996 NP_964354.1 CDS LJ0334 NC_005362.1 378215 378886 R contains type III leader peptidase domain; hypothetical protein complement(378215..378886) Lactobacillus johnsonii NCC 533 2742705 NP_964355.1 CDS rpsL NC_005362.1 379053 379460 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 379053..379460 Lactobacillus johnsonii NCC 533 2742672 NP_964356.1 CDS LJ0336 NC_005362.1 379484 379954 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 379484..379954 Lactobacillus johnsonii NCC 533 2742807 NP_964357.1 CDS LJ0337 NC_005362.1 379984 382080 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 379984..382080 Lactobacillus johnsonii NCC 533 2742175 NP_964358.1 CDS rpsJ NC_005362.1 382351 382659 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 382351..382659 Lactobacillus johnsonii NCC 533 2742245 NP_964359.1 CDS rplC NC_005362.1 382686 383315 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 382686..383315 Lactobacillus johnsonii NCC 533 2742204 NP_964360.1 CDS rplD NC_005362.1 383330 383947 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 383330..383947 Lactobacillus johnsonii NCC 533 2743395 NP_964361.1 CDS rplW NC_005362.1 383947 384243 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 383947..384243 Lactobacillus johnsonii NCC 533 2743489 NP_964362.1 CDS rplB NC_005362.1 384263 385099 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 384263..385099 Lactobacillus johnsonii NCC 533 2742459 NP_964363.1 CDS rpsS NC_005362.1 385121 385408 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 385121..385408 Lactobacillus johnsonii NCC 533 2743337 NP_964364.1 CDS rplV NC_005362.1 385429 385782 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 385429..385782 Lactobacillus johnsonii NCC 533 2742919 NP_964365.1 CDS rpsC NC_005362.1 385797 386465 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 385797..386465 Lactobacillus johnsonii NCC 533 2742915 NP_964366.1 CDS rplP NC_005362.1 386468 386905 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 386468..386905 Lactobacillus johnsonii NCC 533 2743403 NP_964367.1 CDS rpmC NC_005362.1 386895 387092 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 386895..387092 Lactobacillus johnsonii NCC 533 2743425 NP_964368.1 CDS rpsQ NC_005362.1 387115 387381 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 387115..387381 Lactobacillus johnsonii NCC 533 2742763 NP_964369.1 CDS rplN NC_005362.1 387415 387783 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 387415..387783 Lactobacillus johnsonii NCC 533 2742432 NP_964370.1 CDS rplX NC_005362.1 387804 388043 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 387804..388043 Lactobacillus johnsonii NCC 533 2742142 NP_964371.1 CDS rplE NC_005362.1 388058 388600 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 388058..388600 Lactobacillus johnsonii NCC 533 2742625 NP_964372.1 CDS rpsN NC_005362.1 388615 388800 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 388615..388800 Lactobacillus johnsonii NCC 533 2742644 NP_964373.1 CDS rpsH NC_005362.1 388825 389223 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 388825..389223 Lactobacillus johnsonii NCC 533 2742566 NP_964374.1 CDS rplF NC_005362.1 389248 389778 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 389248..389778 Lactobacillus johnsonii NCC 533 2741899 NP_964375.1 CDS rplR NC_005362.1 389806 390165 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 389806..390165 Lactobacillus johnsonii NCC 533 2742506 NP_964376.1 CDS rpsE NC_005362.1 390183 390707 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 390183..390707 Lactobacillus johnsonii NCC 533 2742839 NP_964377.1 CDS rpmD NC_005362.1 390720 390902 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 390720..390902 Lactobacillus johnsonii NCC 533 2743317 NP_964378.1 CDS rplO NC_005362.1 390928 391368 D late assembly protein; 50S ribosomal protein L15 390928..391368 Lactobacillus johnsonii NCC 533 2743069 NP_964379.1 CDS secY NC_005362.1 391368 392663 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 391368..392663 Lactobacillus johnsonii NCC 533 2743359 NP_964380.1 CDS adk NC_005362.1 392675 393328 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 392675..393328 Lactobacillus johnsonii NCC 533 2743222 NP_964381.1 CDS infA NC_005362.1 393402 393623 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 393402..393623 Lactobacillus johnsonii NCC 533 2743667 NP_964382.1 CDS rpmJ NC_005362.1 393638 393754 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 393638..393754 Lactobacillus johnsonii NCC 533 2743640 NP_964383.1 CDS rpsM NC_005362.1 393788 394135 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 393788..394135 Lactobacillus johnsonii NCC 533 2743416 NP_964384.1 CDS LJ0360 NC_005362.1 394160 394549 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 394160..394549 Lactobacillus johnsonii NCC 533 2741867 NP_964385.1 CDS LJ0361 NC_005362.1 394595 395533 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 394595..395533 Lactobacillus johnsonii NCC 533 2743559 NP_964386.1 CDS rplQ NC_005362.1 395560 395943 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 395560..395943 Lactobacillus johnsonii NCC 533 2741932 NP_964387.1 CDS cbiO NC_005362.1 396129 396977 D with CbiNQ forms the ABC transporter for cobalt import; Lactobacillus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 396129..396977 Lactobacillus johnsonii NCC 533 2741915 NP_964388.1 CDS cbiO NC_005362.1 396953 397822 D with CbiNQ forms the ABC transporter for cobalt import; Lactobacillus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 396953..397822 Lactobacillus johnsonii NCC 533 2742236 NP_964389.1 CDS LJ0365 NC_005362.1 397815 398612 D ABC transporter permease component 397815..398612 Lactobacillus johnsonii NCC 533 2743573 NP_964390.1 CDS truA NC_005362.1 398616 399407 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 398616..399407 Lactobacillus johnsonii NCC 533 2743014 NP_964391.1 CDS rplM NC_005362.1 399510 399953 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 399510..399953 Lactobacillus johnsonii NCC 533 2743135 NP_964392.1 CDS rpsI NC_005362.1 399967 400362 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 399967..400362 Lactobacillus johnsonii NCC 533 2743753 NP_964393.1 CDS LJ0369 NC_005362.1 400937 402424 D ABC transporter permease component 400937..402424 Lactobacillus johnsonii NCC 533 2742059 NP_964394.1 CDS LJ0370 NC_005362.1 402425 403999 D ABC transporter ATPase and permease components 402425..403999 Lactobacillus johnsonii NCC 533 2743432 NP_964395.1 CDS LJ0371 NC_005362.1 404024 404410 D contains phosphoglycerate mutase domain; hypothetical protein 404024..404410 Lactobacillus johnsonii NCC 533 2742737 NP_964396.1 CDS LJ0372 NC_005362.1 404511 405560 D transposase 404511..405560 Lactobacillus johnsonii NCC 533 2742598 NP_964397.1 CDS LJ0373 NC_005362.1 405611 406129 D hypothetical protein 405611..406129 Lactobacillus johnsonii NCC 533 2742306 NP_964398.1 CDS LJ0374 NC_005362.1 406355 406939 R contains ThiJ/PfpI domain; hypothetical protein complement(406355..406939) Lactobacillus johnsonii NCC 533 2742074 NP_964399.1 CDS LJ0375 NC_005362.1 407201 407890 D contains phosphoglycerate mutase domain; hypothetical protein 407201..407890 Lactobacillus johnsonii NCC 533 2743163 NP_964400.1 CDS LJ0376 NC_005362.1 407917 408243 R contains bacterial regulatory arsR domain; hypothetical protein complement(407917..408243) Lactobacillus johnsonii NCC 533 2743313 NP_964401.1 CDS LJ0377 NC_005362.1 408336 409220 D contains cation efflux domain; hypothetical protein 408336..409220 Lactobacillus johnsonii NCC 533 2742096 NP_964402.1 CDS LJ0378 NC_005362.1 409285 409542 D hypothetical protein 409285..409542 Lactobacillus johnsonii NCC 533 2742130 NP_964403.1 CDS LJ0379 NC_005362.1 409545 409787 D hypothetical protein 409545..409787 Lactobacillus johnsonii NCC 533 2743195 NP_964404.1 CDS LJ0380 NC_005362.1 409797 410486 D phosphoglycerate mutase 409797..410486 Lactobacillus johnsonii NCC 533 2741990 NP_964405.1 CDS LJ0381 NC_005362.1 410595 411530 D hypothetical protein 410595..411530 Lactobacillus johnsonii NCC 533 2743579 NP_964406.1 CDS LJ0382 NC_005362.1 411766 422625 D contains gram positive anchor domain; hypothetical protein 411766..422625 Lactobacillus johnsonii NCC 533 2742425 NP_964407.1 CDS LJ0383 NC_005362.1 422908 424569 R contains amino acid permease domain; hypothetical protein complement(422908..424569) Lactobacillus johnsonii NCC 533 2742082 NP_964408.1 CDS LJ0384 NC_005362.1 425047 426234 D contains eubacterial secY domain; hypothetical protein 425047..426234 Lactobacillus johnsonii NCC 533 2742118 NP_964409.1 CDS LJ0385 NC_005362.1 426237 427745 D hypothetical protein 426237..427745 Lactobacillus johnsonii NCC 533 2743203 NP_964410.1 CDS LJ0386 NC_005362.1 427747 429291 D hypothetical protein 427747..429291 Lactobacillus johnsonii NCC 533 2743151 NP_964411.1 CDS LJ0387 NC_005362.1 429275 430135 D hypothetical protein 429275..430135 Lactobacillus johnsonii NCC 533 2742732 NP_964412.1 CDS LJ0388 NC_005362.1 430140 432506 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 430140..432506 Lactobacillus johnsonii NCC 533 2743710 NP_964413.1 CDS LJ0389 NC_005362.1 432519 434045 D contains glycosyl transferases group 1 domain; hypothetical protein 432519..434045 Lactobacillus johnsonii NCC 533 2742346 NP_964414.1 CDS LJ0390 NC_005362.1 434042 435370 D hypothetical protein 434042..435370 Lactobacillus johnsonii NCC 533 2741880 NP_964415.1 CDS LJ0391 NC_005362.1 435913 439203 D hypothetical protein 435913..439203 Lactobacillus johnsonii NCC 533 2742690 NP_964416.1 CDS LJ0393 NC_005362.1 439357 440235 D contains glycosyl transferase family 2 domain; hypothetical protein 439357..440235 Lactobacillus johnsonii NCC 533 2743576 NP_964417.1 CDS LJ0394 NC_005362.1 440291 441307 R hypothetical protein complement(440291..441307) Lactobacillus johnsonii NCC 533 2742726 NP_964418.1 CDS LJ0395 NC_005362.1 441590 442939 R aminopeptidase C complement(441590..442939) Lactobacillus johnsonii NCC 533 2742814 NP_964419.1 CDS LJ0396 NC_005362.1 443136 444170 D similar to transcriptional regulator lytR; hypothetical protein 443136..444170 Lactobacillus johnsonii NCC 533 2742629 NP_964420.1 CDS LJ0397 NC_005362.1 444288 444839 D deoxyuridine 5'-triphosphate nucleotidohydrolase 444288..444839 Lactobacillus johnsonii NCC 533 2742322 NP_964421.1 CDS LJ0398 NC_005362.1 444839 446218 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 444839..446218 Lactobacillus johnsonii NCC 533 2743747 NP_964422.1 CDS gltX NC_005362.1 446300 447799 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 446300..447799 Lactobacillus johnsonii NCC 533 2743684 NP_964423.1 CDS cysS NC_005362.1 447889 449301 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 447889..449301 Lactobacillus johnsonii NCC 533 2742569 NP_964424.1 CDS LJ0401 NC_005362.1 449294 449737 D contains uncharacterized BCR domain; hypothetical protein 449294..449737 Lactobacillus johnsonii NCC 533 2742443 NP_964425.1 CDS LJ0402 NC_005362.1 449724 450479 D contains SpoU rRNA methylase family domain; hypothetical protein 449724..450479 Lactobacillus johnsonii NCC 533 2741946 NP_964426.1 CDS LJ0403 NC_005362.1 451032 451250 D hypothetical protein 451032..451250 Lactobacillus johnsonii NCC 533 2742889 NP_964427.1 CDS LJ0404 NC_005362.1 451318 451536 D hypothetical protein 451318..451536 Lactobacillus johnsonii NCC 533 2742928 NP_964428.1 CDS LJ0405 NC_005362.1 451658 453166 D gluconokinase 451658..453166 Lactobacillus johnsonii NCC 533 2743290 NP_964429.1 CDS LJ0406 NC_005362.1 453232 454992 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(453232..454992) Lactobacillus johnsonii NCC 533 2742878 NP_964430.1 CDS LJ0407 NC_005362.1 455092 456339 R contains permease domain; hypothetical protein complement(455092..456339) Lactobacillus johnsonii NCC 533 2742832 NP_964431.1 CDS LJ0408 NC_005362.1 456437 457489 R contains polyprenyl synthetase domain; hypothetical protein complement(456437..457489) Lactobacillus johnsonii NCC 533 2742516 NP_964432.1 CDS rpmG NC_005362.1 457819 457968 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 457819..457968 Lactobacillus johnsonii NCC 533 2743084 NP_964433.1 CDS secE NC_005362.1 457976 458146 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 457976..458146 Lactobacillus johnsonii NCC 533 2742049 NP_964434.1 CDS LJ0409 NC_005362.1 458242 458793 D transcription antitermination protein NusG 458242..458793 Lactobacillus johnsonii NCC 533 2741924 NP_964435.1 CDS rplK NC_005362.1 458925 459350 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 458925..459350 Lactobacillus johnsonii NCC 533 2742066 NP_964436.1 CDS rplA NC_005362.1 459448 460140 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 459448..460140 Lactobacillus johnsonii NCC 533 2743318 NP_964437.1 CDS LJ0412 NC_005362.1 460271 460915 D ABC transporter permease component 460271..460915 Lactobacillus johnsonii NCC 533 2742831 NP_964438.1 CDS LJ0413 NC_005362.1 460902 461549 D ABC transporter ATPase component 460902..461549 Lactobacillus johnsonii NCC 533 2742653 NP_964439.1 CDS LJ0414 NC_005362.1 461549 462337 D ABC transporter solute-binding component 461549..462337 Lactobacillus johnsonii NCC 533 2742252 NP_964440.1 CDS rplJ NC_005362.1 462537 463037 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 462537..463037 Lactobacillus johnsonii NCC 533 2742991 NP_964441.1 CDS rplL NC_005362.1 463081 463443 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 463081..463443 Lactobacillus johnsonii NCC 533 2742844 NP_964442.1 CDS LJ0417 NC_005362.1 463521 464357 D contains ion transport domain; hypothetical protein 463521..464357 Lactobacillus johnsonii NCC 533 2742218 NP_964443.1 CDS LJ0418 NC_005362.1 464389 464613 R hypothetical protein complement(464389..464613) Lactobacillus johnsonii NCC 533 2741898 NP_964444.1 CDS LJ0419 NC_005362.1 464717 465328 D contains SAM-dependent methyltransferase domain; hypothetical protein 464717..465328 Lactobacillus johnsonii NCC 533 2743044 NP_964445.1 CDS LJ0420 NC_005362.1 465795 466616 D hypothetical protein 465795..466616 Lactobacillus johnsonii NCC 533 2742361 NP_964446.1 CDS LJ0421 NC_005362.1 466729 467055 D hypothetical protein 466729..467055 Lactobacillus johnsonii NCC 533 2741982 NP_964447.1 CDS LJ0422 NC_005362.1 467129 467611 D contains cytidine and deoxycytidylate deaminase domain; hypothetical protein 467129..467611 Lactobacillus johnsonii NCC 533 2743495 NP_964448.1 CDS LJ0423 NC_005362.1 467788 469596 D DNA polymerase III subunit gamma/tau 467788..469596 Lactobacillus johnsonii NCC 533 2742067 NP_964449.1 CDS LJ0424 NC_005362.1 469610 469939 D contains DUF149 domain; hypothetical protein 469610..469939 Lactobacillus johnsonii NCC 533 2742189 NP_964450.1 CDS recR NC_005362.1 469941 470540 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 469941..470540 Lactobacillus johnsonii NCC 533 2742855 NP_964451.1 CDS LJ0426 NC_005362.1 470537 470773 D hypothetical protein 470537..470773 Lactobacillus johnsonii NCC 533 2743720 NP_964452.1 CDS tmk NC_005362.1 470880 471521 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 470880..471521 Lactobacillus johnsonii NCC 533 2743708 NP_964453.1 CDS LJ0428 NC_005362.1 471535 471861 D hypothetical protein 471535..471861 Lactobacillus johnsonii NCC 533 2742659 NP_964454.1 CDS LJ0429 NC_005362.1 471861 472718 D contains ATPase involved in DNA replication domain; hypothetical protein 471861..472718 Lactobacillus johnsonii NCC 533 2743528 NP_964455.1 CDS LJ0430 NC_005362.1 472729 473073 D in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 472729..473073 Lactobacillus johnsonii NCC 533 2742589 NP_964456.1 CDS LJ0431 NC_005362.1 473079 473936 D contains tetrapyrrole (Corrin/Porphyrin) methylase domain; hypothetical protein 473079..473936 Lactobacillus johnsonii NCC 533 2742795 NP_964457.1 CDS LJ0432 NC_005362.1 473951 474685 D hypothetical protein 473951..474685 Lactobacillus johnsonii NCC 533 2742428 NP_964458.1 CDS LJ0433 NC_005362.1 474734 475255 D hypothetical protein 474734..475255 Lactobacillus johnsonii NCC 533 2743488 NP_964459.1 CDS LJ0434 NC_005362.1 475284 476009 D contains glycoprotease domain; hypothetical protein 475284..476009 Lactobacillus johnsonii NCC 533 2743585 NP_964460.1 CDS LJ0435 NC_005362.1 475993 476529 D contains acetyltransferase (GNAT) domain; hypothetical protein 475993..476529 Lactobacillus johnsonii NCC 533 2742596 NP_964461.1 CDS LJ0436 NC_005362.1 476547 477593 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 476547..477593 Lactobacillus johnsonii NCC 533 2742153 NP_964462.1 CDS LJ0437 NC_005362.1 477811 480813 D hypothetical protein 477811..480813 Lactobacillus johnsonii NCC 533 2741907 NP_964463.1 CDS LJ0438 NC_005362.1 480818 481699 D hypothetical protein 480818..481699 Lactobacillus johnsonii NCC 533 2742060 NP_964464.1 CDS LJ0439 NC_005362.1 481951 482574 D hypothetical protein 481951..482574 Lactobacillus johnsonii NCC 533 2742499 NP_964465.1 CDS LJ0440 NC_005362.1 482669 484024 R contains voltage gated chloride channel domain; hypothetical protein complement(482669..484024) Lactobacillus johnsonii NCC 533 2743530 NP_964466.1 CDS LJ0441 NC_005362.1 484157 485149 R contains IMP dehydrogenase/GMP reductase domains; guanosine 5'-monophosphate oxidoreductase complement(484157..485149) Lactobacillus johnsonii NCC 533 2742024 NP_964467.1 CDS LJ0442 NC_005362.1 485340 486629 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 485340..486629 Lactobacillus johnsonii NCC 533 2742075 NP_964468.1 CDS LJ0443 NC_005362.1 486633 487928 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 486633..487928 Lactobacillus johnsonii NCC 533 2743160 NP_964469.1 CDS LJ0444 NC_005362.1 488002 488745 D contains predicted EndoIII-related endonuclease domain; hypothetical protein 488002..488745 Lactobacillus johnsonii NCC 533 2742576 NP_964470.1 CDS LJ0445 NC_005362.1 488764 489216 D contains MutT-like domain; hypothetical protein 488764..489216 Lactobacillus johnsonii NCC 533 2741863 NP_964471.1 CDS LJ0446 NC_005362.1 489377 489625 D hypothetical protein 489377..489625 Lactobacillus johnsonii NCC 533 2743005 NP_964472.1 CDS LJ0447 NC_005362.1 489625 489978 D hypothetical protein 489625..489978 Lactobacillus johnsonii NCC 533 2743327 NP_964473.1 CDS LJ0448 NC_005362.1 490168 491427 D two-component system histidine kinase 490168..491427 Lactobacillus johnsonii NCC 533 2743115 NP_964474.1 CDS LJ0449 NC_005362.1 491428 492195 D two-component system response regulator 491428..492195 Lactobacillus johnsonii NCC 533 2742788 NP_964475.1 CDS LJ0450 NC_005362.1 492358 493116 D contains predicted acyl-CoA transferases/carnitine dehydratase domain; hypothetical protein 492358..493116 Lactobacillus johnsonii NCC 533 2741858 NP_964476.1 CDS LJ0451 NC_005362.1 493315 494133 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 493315..494133 Lactobacillus johnsonii NCC 533 2743078 NP_964477.1 CDS LJ0452 NC_005362.1 494251 494718 D hypothetical protein 494251..494718 Lactobacillus johnsonii NCC 533 2742005 NP_964478.1 CDS LJ0453 NC_005362.1 494812 496104 R contains bacterial extracellular solute-binding domain; hypothetical protein complement(494812..496104) Lactobacillus johnsonii NCC 533 2743233 NP_964479.1 CDS LJ0454 NC_005362.1 496215 498140 R ABC transporter ATPase component complement(496215..498140) Lactobacillus johnsonii NCC 533 2742563 NP_964480.1 CDS LJ0455 NC_005362.1 498306 498950 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 498306..498950 Lactobacillus johnsonii NCC 533 2742035 NP_964481.1 CDS LJ0456 NC_005362.1 499091 499657 D contains predicted Rossmann fold nucleotide-binding domain; hypothetical protein 499091..499657 Lactobacillus johnsonii NCC 533 2742515 NP_964482.1 CDS LJ0457 NC_005362.1 499599 499904 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC cellobiose specific 499599..499904 Lactobacillus johnsonii NCC 533 2742224 NP_964483.1 CDS LJ0458 NC_005362.1 500064 500522 D hypothetical protein 500064..500522 Lactobacillus johnsonii NCC 533 2742045 NP_964484.1 CDS LJ0459 NC_005362.1 500519 501277 D hypothetical protein 500519..501277 Lactobacillus johnsonii NCC 533 2742778 NP_964485.1 CDS LJ0459b NC_005362.1 501720 501872 R hypothetical protein complement(501720..501872) Lactobacillus johnsonii NCC 533 2742040 NP_964486.1 CDS groES NC_005362.1 502194 502478 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 502194..502478 Lactobacillus johnsonii NCC 533 2742856 NP_964487.1 CDS groEL NC_005362.1 502509 504140 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 502509..504140 Lactobacillus johnsonii NCC 533 2742759 NP_964488.1 CDS LJ0462 NC_005362.1 504280 504528 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 504280..504528 Lactobacillus johnsonii NCC 533 2742398 NP_964489.1 CDS LJ0463 NC_005362.1 504477 505115 D hypothetical protein 504477..505115 Lactobacillus johnsonii NCC 533 2743506 NP_964490.1 CDS LJ0464 NC_005362.1 505720 507483 D ABC transporter ATPase and permease components 505720..507483 Lactobacillus johnsonii NCC 533 2742427 NP_964491.1 CDS LJ0465 NC_005362.1 507610 510183 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 507610..510183 Lactobacillus johnsonii NCC 533 2742545 NP_964492.1 CDS mutL NC_005362.1 510189 512081 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 510189..512081 Lactobacillus johnsonii NCC 533 2742151 NP_964493.1 CDS ruvA NC_005362.1 512087 512665 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 512087..512665 Lactobacillus johnsonii NCC 533 2743326 NP_964494.1 CDS ruvB NC_005362.1 512694 513713 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 512694..513713 Lactobacillus johnsonii NCC 533 2742636 NP_964495.1 CDS LJ0469 NC_005362.1 513789 514229 D contains DUF219 domain; hypothetical protein 513789..514229 Lactobacillus johnsonii NCC 533 2743336 NP_964496.1 CDS LJ0470 NC_005362.1 514327 515775 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 514327..515775 Lactobacillus johnsonii NCC 533 2743398 NP_964497.1 CDS LJ0471 NC_005362.1 515775 516896 D DNA polymerase IV 515775..516896 Lactobacillus johnsonii NCC 533 2741931 NP_964498.1 CDS LJ0472 NC_005362.1 516934 517899 D contains DHH domain; hypothetical protein 516934..517899 Lactobacillus johnsonii NCC 533 2742738 NP_964499.1 CDS LJ0473 NC_005362.1 517883 519268 D RNA helicase 517883..519268 Lactobacillus johnsonii NCC 533 2742203 NP_964500.1 CDS alaS NC_005362.1 519500 522148 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 519500..522148 Lactobacillus johnsonii NCC 533 2742664 NP_964501.1 CDS LJ0475 NC_005362.1 522203 522460 D hypothetical protein 522203..522460 Lactobacillus johnsonii NCC 533 2743390 NP_964502.1 CDS LJ0476 NC_005362.1 522460 522891 D contains predicted endonuclease involved in recombination domain; similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 522460..522891 Lactobacillus johnsonii NCC 533 2743399 NP_964503.1 CDS LJ0477 NC_005362.1 522893 523207 D hypothetical protein 522893..523207 Lactobacillus johnsonii NCC 533 2743400 NP_964504.1 CDS LJ0478 NC_005362.1 523265 523807 D hypothetical protein 523265..523807 Lactobacillus johnsonii NCC 533 2742894 NP_964505.1 CDS LJ0479 NC_005362.1 523849 526215 D DNA mismatch repair protein MutS 523849..526215 Lactobacillus johnsonii NCC 533 2742524 NP_964506.1 CDS LJ0480 NC_005362.1 526294 526605 D thioredoxin 526294..526605 Lactobacillus johnsonii NCC 533 2742090 NP_964507.1 CDS LJ0481 NC_005362.1 526688 527083 R hypothetical protein complement(526688..527083) Lactobacillus johnsonii NCC 533 2742965 NP_964508.1 CDS LJ0482 NC_005362.1 527180 527980 D glutamate racemase 527180..527980 Lactobacillus johnsonii NCC 533 2743127 NP_964509.1 CDS LJ0483 NC_005362.1 527983 528606 D contains Ham1 domain; hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 527983..528606 Lactobacillus johnsonii NCC 533 2741937 NP_964510.1 CDS LJ0484 NC_005362.1 528762 540875 D contains gram positive anchor domain; hypothetical protein 528762..540875 Lactobacillus johnsonii NCC 533 2743235 NP_964511.1 CDS LJ0485 NC_005362.1 541051 542229 D acetate kinase 541051..542229 Lactobacillus johnsonii NCC 533 2742549 NP_964512.1 CDS LJ0486 NC_005362.1 542275 542808 R contains mechanosensitive ion channel domain; hypothetical protein complement(542275..542808) Lactobacillus johnsonii NCC 533 2743575 NP_964513.1 CDS LJ0487 NC_005362.1 542790 543170 R hypothetical protein complement(542790..543170) Lactobacillus johnsonii NCC 533 2743089 NP_964514.1 CDS LJ0488 NC_005362.1 543293 543724 D contains methyl-accepting chemotaxis domain; hypothetical protein 543293..543724 Lactobacillus johnsonii NCC 533 2743040 NP_964515.1 CDS LJ0489 NC_005362.1 543747 544079 D hypothetical protein 543747..544079 Lactobacillus johnsonii NCC 533 2743335 NP_964516.1 CDS LJ0490 NC_005362.1 544173 545279 R Xaa-Pro dipeptidase complement(544173..545279) Lactobacillus johnsonii NCC 533 2743438 NP_964517.1 CDS LJ0491 NC_005362.1 545423 546418 D catabolite control protein A 545423..546418 Lactobacillus johnsonii NCC 533 2742285 NP_964518.1 CDS LJ0492 NC_005362.1 546491 549307 R contains penicillin binding protein transpeptidase and transglycosylase domains; hypothetical protein complement(546491..549307) Lactobacillus johnsonii NCC 533 2742412 NP_964519.1 CDS LJ0493 NC_005362.1 549406 550803 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(549406..550803) Lactobacillus johnsonii NCC 533 2743099 NP_964520.1 CDS LJ0494 NC_005362.1 550823 552205 R contains glycerophosphoryl diester phosphodiesterase domain; hypothetical protein complement(550823..552205) Lactobacillus johnsonii NCC 533 2742293 NP_964521.1 CDS LJ0495 NC_005362.1 552305 552631 D hypothetical protein 552305..552631 Lactobacillus johnsonii NCC 533 2742870 NP_964522.1 CDS LJ0496 NC_005362.1 552644 554023 D contains 5'-nucleotidase catalytic domain; hypothetical protein 552644..554023 Lactobacillus johnsonii NCC 533 2742348 NP_964523.1 CDS LJ0497 NC_005362.1 554023 554562 D hypothetical protein 554023..554562 Lactobacillus johnsonii NCC 533 2742833 NP_964524.1 CDS LJ0498 NC_005362.1 554565 555347 D contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 554565..555347 Lactobacillus johnsonii NCC 533 2743348 NP_964525.1 CDS LJ0499 NC_005362.1 555344 555952 D hypothetical protein 555344..555952 Lactobacillus johnsonii NCC 533 2742770 NP_964526.1 CDS LJ0500 NC_005362.1 555960 556610 R hypothetical protein complement(555960..556610) Lactobacillus johnsonii NCC 533 2742783 NP_964527.1 CDS LJ0501 NC_005362.1 556637 557593 R contains pyridine nucleotide-disulphide oxidoreductase domain; hypothetical protein complement(556637..557593) Lactobacillus johnsonii NCC 533 2742812 NP_964528.1 CDS LJ0502 NC_005362.1 557693 558064 D contains S1 RNA binding domain; hypothetical protein 557693..558064 Lactobacillus johnsonii NCC 533 2742667 NP_964529.1 CDS LJ0677 NC_005362.1 564086 565294 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 564086..565294 Lactobacillus johnsonii NCC 533 2743431 NP_964530.1 CDS LJ0678 NC_005362.1 565284 566741 D major facilitator superfamily permease 565284..566741 Lactobacillus johnsonii NCC 533 2743058 NP_964531.1 CDS LJ0679 NC_005362.1 566784 567434 R contains PAP2 superfamily domain; hypothetical protein complement(566784..567434) Lactobacillus johnsonii NCC 533 2743282 NP_964532.1 CDS leuS NC_005362.1 567734 570148 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 567734..570148 Lactobacillus johnsonii NCC 533 2742268 NP_964533.1 CDS LJ0681 NC_005362.1 570250 571908 D export protein for polysaccharides and teichoic acids 570250..571908 Lactobacillus johnsonii NCC 533 2742811 NP_964534.1 CDS LJ0682 NC_005362.1 572015 573151 D hypothetical protein 572015..573151 Lactobacillus johnsonii NCC 533 2742380 NP_964535.1 CDS LJ0683 NC_005362.1 573239 573985 D hypothetical protein 573239..573985 Lactobacillus johnsonii NCC 533 2743549 NP_964536.1 CDS LJ0684 NC_005362.1 574029 574874 D contains UPF0031 domain; hypothetical protein 574029..574874 Lactobacillus johnsonii NCC 533 2743716 NP_964537.1 CDS LJ0685 NC_005362.1 574927 575853 D D-alanyl-D-alanine carboxypeptidase 574927..575853 Lactobacillus johnsonii NCC 533 2742838 NP_964538.1 CDS argS NC_005362.1 576133 577809 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 576133..577809 Lactobacillus johnsonii NCC 533 2742414 NP_964539.1 CDS LJ0687 NC_005362.1 577921 578838 D fructose-bisphosphate aldolase 577921..578838 Lactobacillus johnsonii NCC 533 2742781 NP_964540.1 CDS LJ0688 NC_005362.1 578905 579216 D hypothetical protein 578905..579216 Lactobacillus johnsonii NCC 533 2743291 NP_964541.1 CDS LJ0689 NC_005362.1 579725 580261 D hypoxanthine-guanine phosphoribosyltransferase 579725..580261 Lactobacillus johnsonii NCC 533 2742550 NP_964542.1 CDS LJ0690 NC_005362.1 580273 580944 D contains glutamine amidotransferase class-I domain; hypothetical protein 580273..580944 Lactobacillus johnsonii NCC 533 2742942 NP_964543.1 CDS LJ0691 NC_005362.1 581016 581648 D contains predicted nucleoside-diphosphate-sugar epimerase domain; hypothetical protein 581016..581648 Lactobacillus johnsonii NCC 533 2742422 NP_964544.1 CDS LJ0692 NC_005362.1 581866 583203 R transposase complement(581866..583203) Lactobacillus johnsonii NCC 533 2742292 NP_964545.1 CDS LJ0693 NC_005362.1 583303 583767 D transposase 583303..583767 Lactobacillus johnsonii NCC 533 2742518 NP_964546.1 CDS LJ0694 NC_005362.1 583810 584268 R contains GAF domain; hypothetical protein complement(583810..584268) Lactobacillus johnsonii NCC 533 2743063 NP_964547.1 CDS LJ0695 NC_005362.1 584316 585527 R hypothetical protein complement(584316..585527) Lactobacillus johnsonii NCC 533 2741897 NP_964548.1 CDS LJ0696 NC_005362.1 585654 586649 D hypothetical protein 585654..586649 Lactobacillus johnsonii NCC 533 2743189 NP_964549.1 CDS LJ0697 NC_005362.1 586717 587283 D 3-methyladenine DNA glycosylase 586717..587283 Lactobacillus johnsonii NCC 533 2742366 NP_964550.1 CDS LJ0698 NC_005362.1 587283 588221 D contains permease domain; hypothetical protein 587283..588221 Lactobacillus johnsonii NCC 533 2743237 NP_964551.1 CDS LJ0699 NC_005362.1 588237 589022 D contains CAAX amino terminal protease domain; hypothetical protein 588237..589022 Lactobacillus johnsonii NCC 533 2743706 NP_964552.1 CDS LJ0700 NC_005362.1 589061 589813 R glycerol uptake facilitator protein complement(589061..589813) Lactobacillus johnsonii NCC 533 2743276 NP_964553.1 CDS LJ0701 NC_005362.1 590018 591496 D major facilitator superfamily permease 590018..591496 Lactobacillus johnsonii NCC 533 2743111 NP_964554.1 CDS LJ0702 NC_005362.1 591603 593054 D major facilitator superfamily permease 591603..593054 Lactobacillus johnsonii NCC 533 2741929 NP_964555.1 CDS LJ0703 NC_005362.1 593283 593711 D contains acetyltransferase (GNAT) domain; hypothetical protein 593283..593711 Lactobacillus johnsonii NCC 533 2743526 NP_964556.1 CDS LJ0704 NC_005362.1 593837 594922 D ATPase involved in DNA replication initiation domain; hypothetical protein 593837..594922 Lactobacillus johnsonii NCC 533 2743404 NP_964557.1 CDS LJ0705 NC_005362.1 594967 595755 R contains haloacid dehalogenase-like hydrolase domain; hypothetical protein complement(594967..595755) Lactobacillus johnsonii NCC 533 2742298 NP_964558.1 CDS LJ0706 NC_005362.1 595937 596410 D hypothetical protein 595937..596410 Lactobacillus johnsonii NCC 533 2743133 NP_964559.1 CDS LJ0707 NC_005362.1 596451 597257 R contains haloacid dehalogenase-like hydrolase domain; hypothetical protein complement(596451..597257) Lactobacillus johnsonii NCC 533 2741850 NP_964560.1 CDS LJ0708 NC_005362.1 597362 598195 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 597362..598195 Lactobacillus johnsonii NCC 533 2742235 NP_964561.1 CDS LJ0709 NC_005362.1 598304 599638 R uracil permease complement(598304..599638) Lactobacillus johnsonii NCC 533 2742536 NP_964562.1 CDS LJ0710 NC_005362.1 599886 600326 D truncated 6-phospho-beta-galactosidase 599886..600326 Lactobacillus johnsonii NCC 533 2742937 NP_964563.1 CDS LJ0711 NC_005362.1 600466 601554 D contains adenylylsulfate kinase and related kinase domain; hypothetical protein 600466..601554 Lactobacillus johnsonii NCC 533 2743467 NP_964564.1 CDS LJ0712 NC_005362.1 601590 602096 D contains phosphoglycerate mutase domain; hypothetical protein 601590..602096 Lactobacillus johnsonii NCC 533 2743122 NP_964565.1 CDS LJ0713 NC_005362.1 602185 603105 D glutaminase 602185..603105 Lactobacillus johnsonii NCC 533 2743668 NP_964566.1 CDS LJ0714 NC_005362.1 603246 603866 D contains PAP2 superfamily domain; hypothetical protein 603246..603866 Lactobacillus johnsonii NCC 533 2742575 NP_964567.1 CDS LJ0715 NC_005362.1 603956 605311 R hypothetical protein complement(603956..605311) Lactobacillus johnsonii NCC 533 2742487 NP_964568.1 CDS LJ0716 NC_005362.1 605345 606670 R aminopeptidase C complement(605345..606670) Lactobacillus johnsonii NCC 533 2742143 NP_964569.1 CDS LJ0717 NC_005362.1 606697 608364 R contains amino acid permease domain; hypothetical protein complement(606697..608364) Lactobacillus johnsonii NCC 533 2741985 NP_964570.1 CDS LJ0718 NC_005362.1 608429 609853 R dipeptidase complement(608429..609853) Lactobacillus johnsonii NCC 533 2742843 NP_964571.1 CDS LJ0719 NC_005362.1 609887 611212 R aminopeptidase C complement(609887..611212) Lactobacillus johnsonii NCC 533 2742485 NP_964572.1 CDS LJ0720 NC_005362.1 611246 612895 R contains amino acid permease domain; hypothetical protein complement(611246..612895) Lactobacillus johnsonii NCC 533 2741878 NP_964573.1 CDS LJ0721 NC_005362.1 613419 614795 D contains amino acid permease domain; hypothetical protein 613419..614795 Lactobacillus johnsonii NCC 533 2743442 NP_964574.1 CDS LJ0722 NC_005362.1 614888 616105 R major facilitator superfamily permease complement(614888..616105) Lactobacillus johnsonii NCC 533 2742311 NP_964575.1 CDS LJ0723 NC_005362.1 616080 616310 R hypothetical protein complement(616080..616310) Lactobacillus johnsonii NCC 533 2742665 NP_964576.1 CDS LJ0724 NC_005362.1 616325 616735 R contains bacterial regulatory marR domain; hypothetical protein complement(616325..616735) Lactobacillus johnsonii NCC 533 2741848 NP_964577.1 CDS LJ0725 NC_005362.1 616816 617385 R hypothetical protein complement(616816..617385) Lactobacillus johnsonii NCC 533 2743631 NP_964578.1 CDS LJ0726 NC_005362.1 617495 617725 R hypothetical protein complement(617495..617725) Lactobacillus johnsonii NCC 533 2742599 NP_964579.1 CDS LJ0727 NC_005362.1 618138 619220 D contains cellulase M domain; hypothetical protein 618138..619220 Lactobacillus johnsonii NCC 533 2741963 NP_964580.1 CDS LJ0728 NC_005362.1 619517 620170 D ABC transporter ATPase component 619517..620170 Lactobacillus johnsonii NCC 533 2743572 NP_964581.1 CDS LJ0729 NC_005362.1 620148 620909 D contains uncharacterized ACR domain; hypothetical protein 620148..620909 Lactobacillus johnsonii NCC 533 2743200 NP_964582.1 CDS LJ0730 NC_005362.1 620979 622265 R contains phosphatidylserine decarboxylase domain; hypothetical protein complement(620979..622265) Lactobacillus johnsonii NCC 533 2742094 NP_964583.1 CDS LJ0731 NC_005362.1 622293 623726 R arginine/ornithine antiporter complement(622293..623726) Lactobacillus johnsonii NCC 533 2742009 NP_964584.1 CDS LJ0732 NC_005362.1 623762 625048 R contains phosphatidylserine decarboxylase domain; hypothetical protein complement(623762..625048) Lactobacillus johnsonii NCC 533 2743533 NP_964585.1 CDS LJ0733 NC_005362.1 625243 626532 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific complement(625243..626532) Lactobacillus johnsonii NCC 533 2742689 NP_964586.1 CDS LJ0734 NC_005362.1 626665 627810 R contains bacterial regulatory protein ROK domain; hypothetical protein complement(626665..627810) Lactobacillus johnsonii NCC 533 2742148 NP_964587.1 CDS LJ0735 NC_005362.1 627951 628838 D contains bacterial regulatory protein ROK domain; hypothetical protein 627951..628838 Lactobacillus johnsonii NCC 533 2743223 NP_964588.1 CDS LJ0736 NC_005362.1 628828 630321 D beta-glucosidase 628828..630321 Lactobacillus johnsonii NCC 533 2742250 NP_964589.1 CDS LJ0737 NC_005362.1 630318 632591 D contains glycosyl hydrolases family 31 domain; catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase YicI 630318..632591 Lactobacillus johnsonii NCC 533 2741949 NP_964590.1 CDS LJ0738 NC_005362.1 632667 634703 D contains beta-galactosidase domain; hypothetical protein 632667..634703 Lactobacillus johnsonii NCC 533 2743617 NP_964591.1 CDS LJ0739 NC_005362.1 635013 635507 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, sorbose specific 635013..635507 Lactobacillus johnsonii NCC 533 2743702 NP_964592.1 CDS LJ0740 NC_005362.1 635510 636307 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, sorbose specific 635510..636307 Lactobacillus johnsonii NCC 533 2742771 NP_964593.1 CDS LJ0741 NC_005362.1 636300 637133 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, fructose specific 636300..637133 Lactobacillus johnsonii NCC 533 2742449 NP_964594.1 CDS LJ0742 NC_005362.1 637151 637582 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific 637151..637582 Lactobacillus johnsonii NCC 533 2742736 NP_964595.1 CDS LJ0743 NC_005362.1 637575 639242 D oligo-1,6-glucosidase 637575..639242 Lactobacillus johnsonii NCC 533 2742342 NP_964596.1 CDS LJ0744 NC_005362.1 639235 640215 D contains bacterial regulatory lacI domain; hypothetical protein 639235..640215 Lactobacillus johnsonii NCC 533 2743529 NP_964597.1 CDS LJ0745 NC_005362.1 640439 641932 D dipeptide/tripeptide permease 640439..641932 Lactobacillus johnsonii NCC 533 2742734 NP_964598.1 CDS LJ0746 NC_005362.1 642114 643520 D hypothetical protein 642114..643520 Lactobacillus johnsonii NCC 533 2743382 NP_964599.1 CDS LJ0747 NC_005362.1 643611 644849 D major facilitator superfamily permease 643611..644849 Lactobacillus johnsonii NCC 533 2743731 NP_964600.1 CDS LJ0748 NC_005362.1 644949 645803 D hypothetical protein 644949..645803 Lactobacillus johnsonii NCC 533 2743563 NP_964601.1 CDS LJ0749 NC_005362.1 645841 646212 D contains bacterial regulatory protein marR domain; hypothetical protein 645841..646212 Lactobacillus johnsonii NCC 533 2743739 NP_964602.1 CDS LJ0750 NC_005362.1 646282 648015 D ABC transporter ATPase and permease components 646282..648015 Lactobacillus johnsonii NCC 533 2743678 NP_964603.1 CDS LJ0751 NC_005362.1 648008 649777 D ABC transporter ATPase and permease components 648008..649777 Lactobacillus johnsonii NCC 533 2743760 NP_964604.1 CDS LJ0752 NC_005362.1 649841 650662 D glutamine ABC transporter solute-binding component 649841..650662 Lactobacillus johnsonii NCC 533 2743537 NP_964605.1 CDS LJ0753 NC_005362.1 651106 651855 D glutamine ABC transporter ATPase component 651106..651855 Lactobacillus johnsonii NCC 533 2742961 NP_964606.1 CDS LJ0754 NC_005362.1 651857 652681 D glutamine ABC transporter solute-binding component 651857..652681 Lactobacillus johnsonii NCC 533 2742460 NP_964607.1 CDS LJ0755 NC_005362.1 652678 653316 D glutamine ABC transporter permease component 652678..653316 Lactobacillus johnsonii NCC 533 2742591 NP_964608.1 CDS LJ0756 NC_005362.1 653330 653980 D glutamine ABC transporter permease component 653330..653980 Lactobacillus johnsonii NCC 533 2741964 NP_964609.1 CDS LJ0757 NC_005362.1 654165 654554 D hypothetical protein 654165..654554 Lactobacillus johnsonii NCC 533 2742393 NP_964610.1 CDS LJ0758 NC_005362.1 654614 656272 R trehalose-6-phosphate hydrolase complement(654614..656272) Lactobacillus johnsonii NCC 533 2742137 NP_964611.1 CDS LJ0759 NC_005362.1 656288 657190 R trehalose operon repressor complement(656288..657190) Lactobacillus johnsonii NCC 533 2742210 NP_964612.1 CDS LJ0760 NC_005362.1 657207 659135 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, trhalose specific 657207..659135 Lactobacillus johnsonii NCC 533 2743011 NP_964613.1 CDS LJ0761 NC_005362.1 659335 660129 D hypothetical protein 659335..660129 Lactobacillus johnsonii NCC 533 2742246 NP_964614.1 CDS LJ0762 NC_005362.1 660137 660364 D hypothetical protein 660137..660364 Lactobacillus johnsonii NCC 533 2743164 NP_964615.1 CDS LJ0763 NC_005362.1 660391 661026 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(660391..661026) Lactobacillus johnsonii NCC 533 2742676 NP_964616.1 CDS LJ0763b NC_005362.1 661355 661507 D lactacin F two-component system inducer peptide precursor 661355..661507 Lactobacillus johnsonii NCC 533 2743244 NP_964617.1 CDS LJ0764 NC_005362.1 661510 662817 D lactacin F two-component system histidine kinase 661510..662817 Lactobacillus johnsonii NCC 533 2742496 NP_964618.1 CDS LJ0765 NC_005362.1 662960 664117 D transposase 662960..664117 Lactobacillus johnsonii NCC 533 2743034 NP_964619.1 CDS LJ0766 NC_005362.1 664315 665112 D lactacin F two-component system response regulator 664315..665112 Lactobacillus johnsonii NCC 533 2743325 NP_964620.1 CDS LJ0767 NC_005362.1 665125 667284 D lactacin F ABC transporter permease component 665125..667284 Lactobacillus johnsonii NCC 533 2743582 NP_964621.1 CDS LJ0768 NC_005362.1 667295 667888 D lactacin F transporter auxillary protein 667295..667888 Lactobacillus johnsonii NCC 533 2742604 NP_964622.1 CDS LJ0769 NC_005362.1 668015 668242 D bacteriocin lactacin F, subunit LafA precursor 668015..668242 Lactobacillus johnsonii NCC 533 2743693 NP_964623.1 CDS LJ0769b NC_005362.1 668253 668441 D bacteriocin lactacin F, subunit LafX precursor 668253..668441 Lactobacillus johnsonii NCC 533 2742888 NP_964624.1 CDS LJ0770 NC_005362.1 668528 668902 D lactacin F immunity protein 668528..668902 Lactobacillus johnsonii NCC 533 2743159 NP_964625.1 CDS LJ0771 NC_005362.1 669022 669237 R hypothetical protein complement(669022..669237) Lactobacillus johnsonii NCC 533 2743351 NP_964626.1 CDS LJ0772 NC_005362.1 669262 670311 D transposase 669262..670311 Lactobacillus johnsonii NCC 533 2742104 NP_964627.1 CDS LJ0773 NC_005362.1 670446 670853 D lactacin F two-component system response regulator fragment 670446..670853 Lactobacillus johnsonii NCC 533 2742632 NP_964628.1 CDS LJ0774 NC_005362.1 670866 673025 D lactacin F ABC transporter permease component 670866..673025 Lactobacillus johnsonii NCC 533 2743355 NP_964629.1 CDS LJ0775 NC_005362.1 673036 673629 D lactacin F transporter auxillary protein 673036..673629 Lactobacillus johnsonii NCC 533 2742849 NP_964630.1 CDS LJ0775b NC_005362.1 673779 673973 D hypothetical protein 673779..673973 Lactobacillus johnsonii NCC 533 2743632 NP_964631.1 CDS LJ0776 NC_005362.1 674086 674376 D hypothetical protein 674086..674376 Lactobacillus johnsonii NCC 533 2743475 NP_964632.1 CDS LJ0777 NC_005362.1 674461 675693 D contains CAAX amino terminal protease domain; hypothetical protein 674461..675693 Lactobacillus johnsonii NCC 533 2742902 NP_964633.1 CDS LJ0778 NC_005362.1 675702 676064 D hypothetical protein 675702..676064 Lactobacillus johnsonii NCC 533 2742100 NP_964634.1 CDS LJ0779 NC_005362.1 676064 676282 D hypothetical protein 676064..676282 Lactobacillus johnsonii NCC 533 2742513 NP_964635.1 CDS LJ0780 NC_005362.1 676269 676499 D hypothetical protein 676269..676499 Lactobacillus johnsonii NCC 533 2741914 NP_964636.1 CDS LJ0781 NC_005362.1 676622 676936 D hypothetical protein 676622..676936 Lactobacillus johnsonii NCC 533 2742994 NP_964637.1 CDS LJ0782 NC_005362.1 676939 677223 D hypothetical protein 676939..677223 Lactobacillus johnsonii NCC 533 2743289 NP_964638.1 CDS LJ0783 NC_005362.1 677311 679011 D contains E1-E2 ATPase domain; hypothetical protein 677311..679011 Lactobacillus johnsonii NCC 533 2742618 NP_964639.1 CDS LJ0784 NC_005362.1 678983 680119 D contains E1-E2 ATPase domain; hypothetical protein 678983..680119 Lactobacillus johnsonii NCC 533 2742988 NP_964640.1 CDS LJ0785 NC_005362.1 680190 681038 D contains UPF0028 domain; hypothetical protein 680190..681038 Lactobacillus johnsonii NCC 533 2742370 NP_964641.1 CDS LJ0786 NC_005362.1 681139 682632 D ABC transporter permease component 681139..682632 Lactobacillus johnsonii NCC 533 2743257 NP_964642.1 CDS LJ0787 NC_005362.1 682619 683350 D ABC transporter ATPase component 682619..683350 Lactobacillus johnsonii NCC 533 2742138 NP_964643.1 CDS LJ0788 NC_005362.1 683395 683967 D contains acetyltransferase (GNAT) domain; hypothetical protein 683395..683967 Lactobacillus johnsonii NCC 533 2741927 NP_964644.1 CDS LJ0789 NC_005362.1 684085 684954 D ABC transporter solute-binding component 684085..684954 Lactobacillus johnsonii NCC 533 2742212 NP_964645.1 CDS LJ0790 NC_005362.1 684971 685963 D ABC transporter permease component 684971..685963 Lactobacillus johnsonii NCC 533 2742336 NP_964646.1 CDS LJ0791 NC_005362.1 685963 686853 D ABC transporter permease component 685963..686853 Lactobacillus johnsonii NCC 533 2742592 NP_964647.1 CDS LJ0792 NC_005362.1 686864 687664 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 686864..687664 Lactobacillus johnsonii NCC 533 2742742 NP_964648.1 CDS LJ0793 NC_005362.1 687675 688430 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 687675..688430 Lactobacillus johnsonii NCC 533 2742698 NP_964649.1 CDS LJ0794 NC_005362.1 688447 689130 D phosphate uptake regulator 688447..689130 Lactobacillus johnsonii NCC 533 2743481 NP_964650.1 CDS LJ0795 NC_005362.1 689342 690880 D contains short chain fatty acid transporter domain; hypothetical protein 689342..690880 Lactobacillus johnsonii NCC 533 2742884 NP_964651.1 CDS LJ0796 NC_005362.1 690964 691431 D ferritin-like protein; non-heme iron-containing ferritin 690964..691431 Lactobacillus johnsonii NCC 533 2743412 NP_964652.1 CDS LJ0797 NC_005362.1 691521 692447 D ribokinase 691521..692447 Lactobacillus johnsonii NCC 533 2741971 NP_964653.1 CDS LJ0798 NC_005362.1 692447 693145 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 692447..693145 Lactobacillus johnsonii NCC 533 2742774 NP_964654.1 CDS LJ0799 NC_005362.1 693262 694185 D contains inosine-uridine nucleoside N-ribohydrolase domain; hypothetical protein 693262..694185 Lactobacillus johnsonii NCC 533 2743581 NP_964655.1 CDS LJ0800 NC_005362.1 694185 694913 D contains bacterial regulatory gntR domain; hypothetical protein 694185..694913 Lactobacillus johnsonii NCC 533 2743578 NP_964656.1 CDS LJ0801 NC_005362.1 694979 695305 R contains inosine-uridine preferring nucleoside domain; hypothetical protein complement(694979..695305) Lactobacillus johnsonii NCC 533 2742489 NP_964657.1 CDS LJ0802 NC_005362.1 695570 696355 D contains bacterial regulatory deoR domain; hypothetical protein 695570..696355 Lactobacillus johnsonii NCC 533 2743736 NP_964658.1 CDS LJ0803 NC_005362.1 696462 698867 D putative phosphoketolase 696462..698867 Lactobacillus johnsonii NCC 533 2743703 NP_964659.1 CDS LJ0804 NC_005362.1 699028 699684 D contains nitroreductase domain; hypothetical protein 699028..699684 Lactobacillus johnsonii NCC 533 2743418 NP_964660.1 CDS LJ0805 NC_005362.1 699815 700507 D hypothetical protein 699815..700507 Lactobacillus johnsonii NCC 533 2742825 NP_964661.1 CDS LJ0806 NC_005362.1 700558 700878 D contains CBS domain; hypothetical protein 700558..700878 Lactobacillus johnsonii NCC 533 2742486 NP_964662.1 CDS LJ0807 NC_005362.1 700850 701941 D contains CBS domain; hypothetical protein 700850..701941 Lactobacillus johnsonii NCC 533 2742749 NP_964663.1 CDS LJ0808 NC_005362.1 702039 702608 D hypoxanthine-guanine phosphoribosyltransferase 702039..702608 Lactobacillus johnsonii NCC 533 2742998 NP_964664.1 CDS LJ0809 NC_005362.1 702699 704009 R amino acid permease complement(702699..704009) Lactobacillus johnsonii NCC 533 2743727 NP_964665.1 CDS LJ0810 NC_005362.1 704130 704840 D hypothetical protein 704130..704840 Lactobacillus johnsonii NCC 533 2743480 NP_964666.1 CDS LJ0811 NC_005362.1 704851 706080 D contains DEAD/DEAH box helicase domain; hypothetical protein 704851..706080 Lactobacillus johnsonii NCC 533 2742519 NP_964667.1 CDS LJ0812 NC_005362.1 706080 707411 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific 706080..707411 Lactobacillus johnsonii NCC 533 2742581 NP_964668.1 CDS LJ0813 NC_005362.1 707627 708904 R transposase complement(707627..708904) Lactobacillus johnsonii NCC 533 2743560 NP_964669.1 CDS LJ0814 NC_005362.1 709084 709455 R hypothetical protein complement(709084..709455) Lactobacillus johnsonii NCC 533 2742369 NP_964670.1 CDS LJ0815 NC_005362.1 709488 711656 R ATP-dependent Clp protease ATP-binding subunit clpE complement(709488..711656) Lactobacillus johnsonii NCC 533 2743728 NP_964671.1 CDS LJ0816 NC_005362.1 712163 712429 D phosphocarrier protein HPr 712163..712429 Lactobacillus johnsonii NCC 533 2743730 NP_964672.1 CDS LJ0817 NC_005362.1 712429 714168 D phosphoenolpyruvate-protein phosphotransferase (enzyme I) 712429..714168 Lactobacillus johnsonii NCC 533 2742657 NP_964673.1 CDS LJ0818 NC_005362.1 714364 714756 D contains arsenate reductase domain; hypothetical protein 714364..714756 Lactobacillus johnsonii NCC 533 2742110 NP_964674.1 CDS LJ0819 NC_005362.1 714859 715512 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 714859..715512 Lactobacillus johnsonii NCC 533 2742703 NP_964675.1 CDS LJ0820 NC_005362.1 715569 716450 D hypothetical protein 715569..716450 Lactobacillus johnsonii NCC 533 2741945 NP_964676.1 CDS LJ0821 NC_005362.1 716456 717154 R hypothetical protein complement(716456..717154) Lactobacillus johnsonii NCC 533 2741958 NP_964677.1 CDS LJ0822 NC_005362.1 717132 717755 R hypothetical protein complement(717132..717755) Lactobacillus johnsonii NCC 533 2742946 NP_964678.1 CDS LJ0823 NC_005362.1 717833 718459 D contains guanosine polyphosphate pyrophosphohydrolase/synthetase domain; hypothetical protein 717833..718459 Lactobacillus johnsonii NCC 533 2743401 NP_964679.1 CDS ppnK NC_005362.1 718459 719271 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 718459..719271 Lactobacillus johnsonii NCC 533 2742061 NP_964680.1 CDS LJ0825 NC_005362.1 719271 720170 D contains RNA pseudouridylate synthase domain; hypothetical protein 719271..720170 Lactobacillus johnsonii NCC 533 2743246 NP_964681.1 CDS LJ0826 NC_005362.1 720270 722045 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 720270..722045 Lactobacillus johnsonii NCC 533 2743639 NP_964682.1 CDS LJ0827 NC_005362.1 722113 723342 R contains ATPase involved in DNA replication initiation domain; hypothetical protein complement(722113..723342) Lactobacillus johnsonii NCC 533 2741855 NP_964683.1 CDS LJ0828 NC_005362.1 723412 724434 R hypothetical protein complement(723412..724434) Lactobacillus johnsonii NCC 533 2742474 NP_964684.1 CDS LJ0829 NC_005362.1 724574 724954 D hypothetical protein 724574..724954 Lactobacillus johnsonii NCC 533 2743725 NP_964685.1 CDS LJ0830 NC_005362.1 724966 726147 D contains DUF20 domain; hypothetical protein 724966..726147 Lactobacillus johnsonii NCC 533 2742897 NP_964686.1 CDS LJ0831 NC_005362.1 726220 726777 D contains SpoU rRNA methylase domain; hypothetical protein 726220..726777 Lactobacillus johnsonii NCC 533 2742982 NP_964687.1 CDS LJ0832 NC_005362.1 726779 727213 D hypothetical protein 726779..727213 Lactobacillus johnsonii NCC 533 2743334 NP_964688.1 CDS LJ0833 NC_005362.1 727235 729658 D stage III sporulation protein E 727235..729658 Lactobacillus johnsonii NCC 533 2742511 NP_964689.1 CDS LJ0834 NC_005362.1 729661 730875 D contains predicted Zn-dependent peptidase domain; hypothetical protein 729661..730875 Lactobacillus johnsonii NCC 533 2742840 NP_964690.1 CDS LJ0835 NC_005362.1 730872 732107 D contains peptidase family M16 domain; hypothetical protein 730872..732107 Lactobacillus johnsonii NCC 533 2742934 NP_964691.1 CDS LJ0836 NC_005362.1 732108 732836 D contains short chain dehydrogenase domain; hypothetical protein 732108..732836 Lactobacillus johnsonii NCC 533 2743217 NP_964692.1 CDS LJ0837 NC_005362.1 732895 733944 D hypothetical protein 732895..733944 Lactobacillus johnsonii NCC 533 2742786 NP_964693.1 CDS LJ0838 NC_005362.1 733944 734507 D CDP-diacylglycerol--glycerol-3-phosphate3- phosphatidyltransferase 733944..734507 Lactobacillus johnsonii NCC 533 2742234 NP_964694.1 CDS recA NC_005362.1 734670 735752 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 734670..735752 Lactobacillus johnsonii NCC 533 2743017 NP_964695.1 CDS LJ0840 NC_005362.1 735879 737501 D contains HD domain; protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 735879..737501 Lactobacillus johnsonii NCC 533 2743397 NP_964696.1 CDS LJ0841 NC_005362.1 737603 738745 D contains glycosyl transferase domain; hypothetical protein 737603..738745 Lactobacillus johnsonii NCC 533 2743169 NP_964697.1 CDS LJ0842 NC_005362.1 738763 739428 R contains UPF0029 domain; hypothetical protein complement(738763..739428) Lactobacillus johnsonii NCC 533 2743746 NP_964698.1 CDS LJ0843 NC_005362.1 739552 740739 D COMF operon protein 1 739552..740739 Lactobacillus johnsonii NCC 533 2741873 NP_964699.1 CDS LJ0844 NC_005362.1 740736 741407 D COMF operon protein 3 740736..741407 Lactobacillus johnsonii NCC 533 2742350 NP_964700.1 CDS LJ0845 NC_005362.1 741489 742034 D contains sigma 54 modulation domain; hypothetical protein 741489..742034 Lactobacillus johnsonii NCC 533 2741988 NP_964701.1 CDS secA NC_005362.1 742192 744591 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 742192..744591 Lactobacillus johnsonii NCC 533 2742762 NP_964702.1 CDS LJ0847 NC_005362.1 744791 745789 D peptide chain release factor 2 744791..745789 Lactobacillus johnsonii NCC 533 2743052 NP_964703.1 CDS LJ0848 NC_005362.1 745808 746086 D hypothetical protein 745808..746086 Lactobacillus johnsonii NCC 533 2743670 NP_964704.1 CDS LJ0849 NC_005362.1 746079 747038 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 746079..747038 Lactobacillus johnsonii NCC 533 2743553 NP_964705.1 CDS LJ0850 NC_005362.1 747035 747871 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 747035..747871 Lactobacillus johnsonii NCC 533 2741943 NP_964706.1 CDS gpsA NC_005362.1 747908 748927 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 747908..748927 Lactobacillus johnsonii NCC 533 2743066 NP_964707.1 CDS LJ0852 NC_005362.1 748999 749934 D thioredoxin reductase 748999..749934 Lactobacillus johnsonii NCC 533 2742984 NP_964708.1 CDS LJ0853 NC_005362.1 750021 751013 R UDP-glucose 4-epimerase complement(750021..751013) Lactobacillus johnsonii NCC 533 2741903 NP_964709.1 CDS LJ0854 NC_005362.1 751045 751998 R beta-galactosidase small subunit complement(751045..751998) Lactobacillus johnsonii NCC 533 2742746 NP_964710.1 CDS LJ0855 NC_005362.1 751982 753862 R beta-galactosidase large subunit complement(751982..753862) Lactobacillus johnsonii NCC 533 2742410 NP_964711.1 CDS LJ0856 NC_005362.1 754076 755086 D lactose operon repressor 754076..755086 Lactobacillus johnsonii NCC 533 2742463 NP_964712.1 CDS LJ0857 NC_005362.1 755272 757236 D lactose permease 755272..757236 Lactobacillus johnsonii NCC 533 2742065 NP_964713.1 CDS LJ0858 NC_005362.1 757248 759254 D beta-galactosidase 757248..759254 Lactobacillus johnsonii NCC 533 2743501 NP_964714.1 CDS LJ0859 NC_005362.1 759382 760551 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 759382..760551 Lactobacillus johnsonii NCC 533 2742333 NP_964715.1 CDS LJ0860 NC_005362.1 760570 762057 D catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 760570..762057 Lactobacillus johnsonii NCC 533 2743600 NP_964716.1 CDS LJ0861 NC_005362.1 762041 763027 D aldose 1-epimerase 762041..763027 Lactobacillus johnsonii NCC 533 2742085 NP_964717.1 CDS LJ0862 NC_005362.1 763174 764898 D phosphomannomutase 763174..764898 Lactobacillus johnsonii NCC 533 2742140 NP_964718.1 CDS LJ0863 NC_005362.1 764997 767012 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 764997..767012 Lactobacillus johnsonii NCC 533 2742053 NP_964719.1 CDS LJ0864 NC_005362.1 767027 769894 D excinuclease ABC subunit A 767027..769894 Lactobacillus johnsonii NCC 533 2742026 NP_964720.1 CDS LJ0865 NC_005362.1 769944 770483 D hypothetical protein 769944..770483 Lactobacillus johnsonii NCC 533 2743131 NP_964721.1 CDS LJ0866 NC_005362.1 770592 771467 D contains uncharacterized BCR domain; hypothetical protein 770592..771467 Lactobacillus johnsonii NCC 533 2743280 NP_964722.1 CDS LJ0867 NC_005362.1 771478 772515 D contains UPF0052 region; hypothetical protein 771478..772515 Lactobacillus johnsonii NCC 533 2742683 NP_964723.1 CDS LJ0868 NC_005362.1 772519 773460 D contains DUF199 region; hypothetical protein 772519..773460 Lactobacillus johnsonii NCC 533 2742841 NP_964724.1 CDS clpP NC_005362.1 773513 774100 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(773513..774100) Lactobacillus johnsonii NCC 533 2741888 NP_964725.1 CDS LJ0870 NC_005362.1 774242 775690 R amino acid permease complement(774242..775690) Lactobacillus johnsonii NCC 533 2742260 NP_964726.1 CDS LJ0871 NC_005362.1 776127 777158 D hypothetical protein 776127..777158 Lactobacillus johnsonii NCC 533 2743503 NP_964727.1 CDS LJ0872 NC_005362.1 777213 778229 D glyceraldehyde 3-phosphate dehydrogenase 777213..778229 Lactobacillus johnsonii NCC 533 2742727 NP_964728.1 CDS pgk NC_005362.1 778336 779547 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 778336..779547 Lactobacillus johnsonii NCC 533 2742692 NP_964729.1 CDS tpiA NC_005362.1 779566 780321 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 779566..780321 Lactobacillus johnsonii NCC 533 2742648 NP_964730.1 CDS eno NC_005362.1 780368 781666 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 780368..781666 Lactobacillus johnsonii NCC 533 2742817 NP_964731.1 CDS secG NC_005362.1 781790 782023 D preprotein translocase subunit SecG 781790..782023 Lactobacillus johnsonii NCC 533 2742556 NP_964732.1 CDS LJ0877 NC_005362.1 782107 784449 D ribonuclease R 782107..784449 Lactobacillus johnsonii NCC 533 2743542 NP_964733.1 CDS smpB NC_005362.1 784464 784919 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 784464..784919 Lactobacillus johnsonii NCC 533 2743591 NP_964734.1 CDS LJ0879 NC_005362.1 784932 785501 D contains acetyltransferase (GNAT) domain; hypothetical protein 784932..785501 Lactobacillus johnsonii NCC 533 2742921 NP_964735.1 CDS LJ0880 NC_005362.1 785688 786257 D contains transcriptional regulator helix-turn-helix domain, AraR family; hypothetical protein 785688..786257 Lactobacillus johnsonii NCC 533 2743685 NP_964736.1 CDS LJ0881 NC_005362.1 786254 786769 R hypothetical protein complement(786254..786769) Lactobacillus johnsonii NCC 533 2742397 NP_964737.1 CDS LJ0882 NC_005362.1 786793 787659 R contains haloacid dehalogenase-like hydrolase domain; hypothetical protein complement(786793..787659) Lactobacillus johnsonii NCC 533 2742167 NP_964738.1 CDS LJ0883 NC_005362.1 787736 788431 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 787736..788431 Lactobacillus johnsonii NCC 533 2743712 NP_964739.1 CDS eutD NC_005362.1 788505 789482 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 788505..789482 Lactobacillus johnsonii NCC 533 2742678 NP_964740.1 CDS LJ0885 NC_005362.1 789484 789960 D contains uncharacterized P-loop hydrolase UPF0079 domain; hypothetical protein 789484..789960 Lactobacillus johnsonii NCC 533 2742433 NP_964741.1 CDS LJ0886 NC_005362.1 789977 790510 R contains exonuclease domain; hypothetical protein complement(789977..790510) Lactobacillus johnsonii NCC 533 2742949 NP_964742.1 CDS murB NC_005362.1 790628 791533 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 790628..791533 Lactobacillus johnsonii NCC 533 2742847 NP_964743.1 CDS LJ0888 NC_005362.1 791599 792690 D spermidine/putrescine ABC transporter ATPase 791599..792690 Lactobacillus johnsonii NCC 533 2742720 NP_964744.1 CDS LJ0889 NC_005362.1 792694 793506 D spermidine/putrescine ABC transporter permease 792694..793506 Lactobacillus johnsonii NCC 533 2742885 NP_964745.1 CDS LJ0890 NC_005362.1 793503 794300 D spermidine/putrescine ABC transporter permease 793503..794300 Lactobacillus johnsonii NCC 533 2743523 NP_964746.1 CDS LJ0891 NC_005362.1 794297 795370 D spermidine/putrescine ABC transporter solute-binding component 794297..795370 Lactobacillus johnsonii NCC 533 2742718 NP_964747.1 CDS LJ0892 NC_005362.1 795411 796259 D contains DUF147 domain; hypothetical protein 795411..796259 Lactobacillus johnsonii NCC 533 2742264 NP_964748.1 CDS LJ0893 NC_005362.1 796256 797224 D hypothetical protein 796256..797224 Lactobacillus johnsonii NCC 533 2742906 NP_964749.1 CDS glmM NC_005362.1 797237 798604 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 797237..798604 Lactobacillus johnsonii NCC 533 2742017 NP_964750.1 CDS LJ0895 NC_005362.1 798784 799599 D contains predicted hydrolases of the HAD superfamily domain; hypothetical protein 798784..799599 Lactobacillus johnsonii NCC 533 2742228 NP_964751.1 CDS LJ0896 NC_005362.1 799592 799981 D contains CrcB-like domain; hypothetical protein 799592..799981 Lactobacillus johnsonii NCC 533 2743413 NP_964752.1 CDS LJ0897 NC_005362.1 799978 800337 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 799978..800337 Lactobacillus johnsonii NCC 533 2742954 NP_964753.1 CDS LJ0898 NC_005362.1 800392 801609 R hypothetical protein complement(800392..801609) Lactobacillus johnsonii NCC 533 2742010 NP_964754.1 CDS LJ0899 NC_005362.1 801721 802428 D hypothetical protein 801721..802428 Lactobacillus johnsonii NCC 533 2742907 NP_964755.1 CDS LJ0900 NC_005362.1 802431 803207 D contains alpha/beta hydrolase fold domain; hypothetical protein 802431..803207 Lactobacillus johnsonii NCC 533 2743466 NP_964756.1 CDS LJ0901 NC_005362.1 803252 804142 R contains lipoprotein domain; hypothetical protein complement(803252..804142) Lactobacillus johnsonii NCC 533 2743393 NP_964757.1 CDS LJ0902 NC_005362.1 804306 805514 D DNA/pantothenate metabolism flavoprotein 804306..805514 Lactobacillus johnsonii NCC 533 2742863 NP_964758.1 CDS LJ0903 NC_005362.1 805511 806026 D hypothetical protein 805511..806026 Lactobacillus johnsonii NCC 533 2743423 NP_964759.1 CDS LJ0904 NC_005362.1 806100 806831 D contains DUF28 domain; hypothetical protein 806100..806831 Lactobacillus johnsonii NCC 533 2742500 NP_964760.1 CDS LJ0905 NC_005362.1 806989 807966 D contains bacterial type II secretion system protein domain; hypothetical protein 806989..807966 Lactobacillus johnsonii NCC 533 2743309 NP_964761.1 CDS LJ0906 NC_005362.1 807932 808933 D contains general secretion pathway protein F domain; hypothetical protein 807932..808933 Lactobacillus johnsonii NCC 533 2742468 NP_964762.1 CDS LJ0907 NC_005362.1 808946 809242 D hypothetical protein 808946..809242 Lactobacillus johnsonii NCC 533 2743647 NP_964763.1 CDS LJ0908 NC_005362.1 809354 809656 D hypothetical protein 809354..809656 Lactobacillus johnsonii NCC 533 2742435 NP_964764.1 CDS LJ0909 NC_005362.1 809646 809864 D hypothetical protein 809646..809864 Lactobacillus johnsonii NCC 533 2743676 NP_964765.1 CDS LJ0910 NC_005362.1 809870 810379 D hypothetical protein 809870..810379 Lactobacillus johnsonii NCC 533 2742086 NP_964766.1 CDS LJ0911 NC_005362.1 810585 811586 D contains type I restriction-modification system methyltransferase domain; hypothetical protein 810585..811586 Lactobacillus johnsonii NCC 533 2742621 NP_964767.1 CDS LJ0912 NC_005362.1 811612 812820 D acetate kinase 811612..812820 Lactobacillus johnsonii NCC 533 2742313 NP_964768.1 CDS LJ0913 NC_005362.1 813481 815874 D levansucrase precursor 813481..815874 Lactobacillus johnsonii NCC 533 2742544 NP_964769.1 CDS LJ0914 NC_005362.1 816113 817003 D hypothetical protein 816113..817003 Lactobacillus johnsonii NCC 533 2742423 NP_964770.1 CDS LJ0915 NC_005362.1 817006 818172 D contains aminotransferase class I and II domain; hypothetical protein 817006..818172 Lactobacillus johnsonii NCC 533 2742330 NP_964771.1 CDS LJ0916 NC_005362.1 818233 819198 D mannose-6-phosphate isomerase 818233..819198 Lactobacillus johnsonii NCC 533 2742314 NP_964772.1 CDS LJ0917 NC_005362.1 819223 819615 D hypothetical protein 819223..819615 Lactobacillus johnsonii NCC 533 2743409 NP_964773.1 CDS LJ0918 NC_005362.1 819615 820325 D two-component system response regulator 819615..820325 Lactobacillus johnsonii NCC 533 2743761 NP_964774.1 CDS LJ0919 NC_005362.1 820329 821780 D two-component system histidine kinase 820329..821780 Lactobacillus johnsonii NCC 533 2743239 NP_964775.1 CDS LJ0920 NC_005362.1 821822 822460 R contains alkaline phosphatase superfamily domain; hypothetical protein complement(821822..822460) Lactobacillus johnsonii NCC 533 2742194 NP_964776.1 CDS LJ0921 NC_005362.1 822457 823203 R contains alkaline phosphatase superfamily domain; hypothetical protein complement(822457..823203) Lactobacillus johnsonii NCC 533 2743707 NP_964777.1 CDS LJ0922 NC_005362.1 823175 824014 R contains alkaline phosphatase superfamily domain; hypothetical protein complement(823175..824014) Lactobacillus johnsonii NCC 533 2743087 NP_964778.1 CDS LJ0923 NC_005362.1 824174 824776 D hypothetical protein 824174..824776 Lactobacillus johnsonii NCC 533 2743077 NP_964779.1 CDS pgi NC_005362.1 824860 826203 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 824860..826203 Lactobacillus johnsonii NCC 533 2742521 NP_964780.1 CDS LJ0925 NC_005362.1 826278 827720 D contains permease domain; hypothetical protein 826278..827720 Lactobacillus johnsonii NCC 533 2743150 NP_964781.1 CDS LJ0926 NC_005362.1 827713 828153 D hypothetical protein 827713..828153 Lactobacillus johnsonii NCC 533 2743279 NP_964782.1 CDS LJ0927 NC_005362.1 828512 829531 D contains penicillin binding protein domain; hypothetical protein 828512..829531 Lactobacillus johnsonii NCC 533 2742052 NP_964783.1 CDS LJ0928 NC_005362.1 829568 830920 R contains Mur ligase family, catalytic domain; hypothetical protein complement(829568..830920) Lactobacillus johnsonii NCC 533 2743492 NP_964784.1 CDS LJ0929 NC_005362.1 831079 831678 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 831079..831678 Lactobacillus johnsonii NCC 533 2742371 NP_964785.1 CDS prfA NC_005362.1 831710 832798 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 831710..832798 Lactobacillus johnsonii NCC 533 2743266 NP_964786.1 CDS LJ0931 NC_005362.1 832791 833633 D contains SAM-dependent methyltransferase domain; hypothetical protein 832791..833633 Lactobacillus johnsonii NCC 533 2743258 NP_964787.1 CDS LJ0932 NC_005362.1 833633 834625 D contains yrdC domain; hypothetical protein 833633..834625 Lactobacillus johnsonii NCC 533 2742364 NP_964788.1 CDS upp NC_005362.1 834739 835350 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 834739..835350 Lactobacillus johnsonii NCC 533 2742541 NP_964789.1 CDS LJ0934 NC_005362.1 835461 836177 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 835461..836177 Lactobacillus johnsonii NCC 533 2743010 NP_964790.1 CDS LJ0935 NC_005362.1 836196 836408 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 836196..836408 Lactobacillus johnsonii NCC 533 2743009 NP_964791.1 CDS LJ0936 NC_005362.1 836458 836958 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 836458..836958 Lactobacillus johnsonii NCC 533 2743726 NP_964792.1 CDS LJ0937 NC_005362.1 836958 837506 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 836958..837506 Lactobacillus johnsonii NCC 533 2743032 NP_964793.1 CDS LJ0938 NC_005362.1 837521 839032 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 837521..839032 Lactobacillus johnsonii NCC 533 2743663 NP_964794.1 CDS LJ0939 NC_005362.1 839050 840006 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 839050..840006 Lactobacillus johnsonii NCC 533 2741916 NP_964795.1 CDS LJ0940 NC_005362.1 840029 841471 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 840029..841471 Lactobacillus johnsonii NCC 533 2742015 NP_964796.1 CDS atpC NC_005362.1 841483 841923 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 841483..841923 Lactobacillus johnsonii NCC 533 2743229 NP_964797.1 CDS LJ0942 NC_005362.1 841926 842207 D hypothetical protein 841926..842207 Lactobacillus johnsonii NCC 533 2742387 NP_964798.1 CDS LJ0943 NC_005362.1 842315 843304 D rod shape-determining protein MreB 842315..843304 Lactobacillus johnsonii NCC 533 2743121 NP_964799.1 CDS LJ0944 NC_005362.1 843494 843787 D contains DUF37 domain; hypothetical protein 843494..843787 Lactobacillus johnsonii NCC 533 2742107 NP_964800.1 CDS LJ0945 NC_005362.1 843798 844025 D hypothetical protein 843798..844025 Lactobacillus johnsonii NCC 533 2743312 NP_964801.1 CDS LJ0946 NC_005362.1 844044 845240 D contains cellcycle protein domain; hypothetical protein 844044..845240 Lactobacillus johnsonii NCC 533 2743283 NP_964802.1 CDS LJ0947 NC_005362.1 845289 845768 R contains universal stress protein domain; hypothetical protein complement(845289..845768) Lactobacillus johnsonii NCC 533 2743125 NP_964803.1 CDS LJ0948 NC_005362.1 845829 846113 R hypothetical protein complement(845829..846113) Lactobacillus johnsonii NCC 533 2743307 NP_964804.1 CDS LJ0949 NC_005362.1 846398 847693 R ATPase family associated contains various cellular activities domain; recombination factor protein RarA complement(846398..847693) Lactobacillus johnsonii NCC 533 2743117 NP_964805.1 CDS LJ0950 NC_005362.1 847696 848160 R hypothetical protein complement(847696..848160) Lactobacillus johnsonii NCC 533 2743043 NP_964806.1 CDS rpsD NC_005362.1 848277 848888 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(848277..848888) Lactobacillus johnsonii NCC 533 2743051 NP_964807.1 CDS LJ0952 NC_005362.1 849168 850892 D contains chromosome segregation ATPase domain; acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 849168..850892 Lactobacillus johnsonii NCC 533 2743057 NP_964808.1 CDS LJ0953 NC_005362.1 850983 852137 D NifS/IcsS protein-like protein 850983..852137 Lactobacillus johnsonii NCC 533 2743408 NP_964809.1 CDS LJ0954 NC_005362.1 852147 853364 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 852147..853364 Lactobacillus johnsonii NCC 533 2742873 NP_964810.1 CDS LJ0955 NC_005362.1 853415 854116 D ribosomal large subunit pseudouridine synthase B 853415..854116 Lactobacillus johnsonii NCC 533 2743388 NP_964811.1 CDS LJ0956 NC_005362.1 854120 855232 D contains glycerophosphoryl diester phosphodiesterase domain; hypothetical protein 854120..855232 Lactobacillus johnsonii NCC 533 2742503 NP_964812.1 CDS LJ0957 NC_005362.1 855444 858071 D cation-transporting ATPase PacL 855444..858071 Lactobacillus johnsonii NCC 533 2743613 NP_964813.1 CDS valS NC_005362.1 858364 861003 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 858364..861003 Lactobacillus johnsonii NCC 533 2742555 NP_964814.1 CDS LJ0959 NC_005362.1 861006 862271 D similar to folylpolyglutamate synthase; hypothetical protein 861006..862271 Lactobacillus johnsonii NCC 533 2742877 NP_964815.1 CDS LJ0960 NC_005362.1 862261 862941 D contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 862261..862941 Lactobacillus johnsonii NCC 533 2743006 NP_964816.1 CDS LJ0961 NC_005362.1 862980 863591 D DNA repair protein RadC 862980..863591 Lactobacillus johnsonii NCC 533 2742034 NP_964817.1 CDS LJ0962 NC_005362.1 863729 864730 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 863729..864730 Lactobacillus johnsonii NCC 533 2742959 NP_964818.1 CDS LJ0963 NC_005362.1 864795 865646 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 864795..865646 Lactobacillus johnsonii NCC 533 2742802 NP_964819.1 CDS LJ0964 NC_005362.1 865646 866179 D rod shape-determining protein MreD 865646..866179 Lactobacillus johnsonii NCC 533 2742828 NP_964820.1 CDS LJ0965 NC_005362.1 866453 866788 D hypothetical protein 866453..866788 Lactobacillus johnsonii NCC 533 2742944 NP_964821.1 CDS LJ0966 NC_005362.1 866969 867400 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 866969..867400 Lactobacillus johnsonii NCC 533 2742798 NP_964822.1 CDS mraW NC_005362.1 867384 868352 D S-adenosyl-methyltransferase MraW 867384..868352 Lactobacillus johnsonii NCC 533 2742952 NP_964823.1 CDS LJ0968 NC_005362.1 868381 868743 D hypothetical protein 868381..868743 Lactobacillus johnsonii NCC 533 2742883 NP_964824.1 CDS LJ0969 NC_005362.1 868743 870893 D penicillin-binding protein 2B 868743..870893 Lactobacillus johnsonii NCC 533 2742927 NP_964825.1 CDS mraY NC_005362.1 870918 871877 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 870918..871877 Lactobacillus johnsonii NCC 533 2743411 NP_964826.1 CDS murD NC_005362.1 871885 873267 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 871885..873267 Lactobacillus johnsonii NCC 533 2743003 NP_964827.1 CDS murG NC_005362.1 873270 874382 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 873270..874382 Lactobacillus johnsonii NCC 533 2742912 NP_964828.1 CDS LJ0973 NC_005362.1 874401 875249 D Div1B-like protein 874401..875249 Lactobacillus johnsonii NCC 533 2742933 NP_964829.1 CDS LJ0974 NC_005362.1 875314 876684 D cell division protein FtsA 875314..876684 Lactobacillus johnsonii NCC 533 2742941 NP_964830.1 CDS LJ0975 NC_005362.1 876702 878078 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 876702..878078 Lactobacillus johnsonii NCC 533 2743389 NP_964831.1 CDS LJ0976 NC_005362.1 878097 878531 D contains uncharacterized BCR domain; hypothetical protein 878097..878531 Lactobacillus johnsonii NCC 533 2742950 NP_964832.1 CDS LJ0977 NC_005362.1 878531 878827 D contains YGGT family domain; hypothetical protein 878531..878827 Lactobacillus johnsonii NCC 533 2743341 NP_964833.1 CDS LJ0978 NC_005362.1 878829 879626 D contains S4 domain; hypothetical protein 878829..879626 Lactobacillus johnsonii NCC 533 2742971 NP_964834.1 CDS LJ0979 NC_005362.1 879631 880419 D possible cell-division initiation protein (divIVA); hypothetical protein 879631..880419 Lactobacillus johnsonii NCC 533 2742033 NP_964835.1 CDS ileS NC_005362.1 880626 883433 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 880626..883433 Lactobacillus johnsonii NCC 533 2742127 NP_964836.1 CDS LJ0980b NC_005362.1 883433 883642 D cold shock protein 883433..883642 Lactobacillus johnsonii NCC 533 2742116 NP_964837.1 CDS LJ0981 NC_005362.1 883656 884219 D ADP-ribose pyrophosphatase 883656..884219 Lactobacillus johnsonii NCC 533 2743031 NP_964838.1 CDS LJ0982 NC_005362.1 884212 884502 D hypothetical protein 884212..884502 Lactobacillus johnsonii NCC 533 2742114 NP_964839.1 CDS LJ0983 NC_005362.1 884518 885219 D nucleoside phosphorylase 884518..885219 Lactobacillus johnsonii NCC 533 2742845 NP_964840.1 CDS LJ0984 NC_005362.1 885321 886475 D cysteine desulfurase NifS 885321..886475 Lactobacillus johnsonii NCC 533 2742501 NP_964841.1 CDS LJ0985 NC_005362.1 886579 886914 D hypothetical protein 886579..886914 Lactobacillus johnsonii NCC 533 2742092 NP_964842.1 CDS mnmA NC_005362.1 886932 888059 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 886932..888059 Lactobacillus johnsonii NCC 533 2742514 NP_964843.1 CDS LJ0987 NC_005362.1 888163 888822 D contains phosphoglycerate mutase family domain; hypothetical protein 888163..888822 Lactobacillus johnsonii NCC 533 2743294 NP_964844.1 CDS LJ0988 NC_005362.1 888824 889468 D contains TPR-repeat domain; hypothetical protein 888824..889468 Lactobacillus johnsonii NCC 533 2743669 NP_964845.1 CDS LJ0989 NC_005362.1 889455 891830 D contains ATP-dependent exoDNAse alpha chain domain; hypothetical protein 889455..891830 Lactobacillus johnsonii NCC 533 2742862 NP_964846.1 CDS LJ0990 NC_005362.1 891869 892804 R contains diacylglycerol kinase catalytic domain; hypothetical protein complement(891869..892804) Lactobacillus johnsonii NCC 533 2742608 NP_964847.1 CDS LJ0991 NC_005362.1 892854 894533 R contains UPF0036 domain; hypothetical protein complement(892854..894533) Lactobacillus johnsonii NCC 533 2742624 NP_964848.1 CDS LJ0992 NC_005362.1 894539 894766 R hypothetical protein complement(894539..894766) Lactobacillus johnsonii NCC 533 2743455 NP_964849.1 CDS def NC_005362.1 894952 895506 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(894952..895506) Lactobacillus johnsonii NCC 533 2743557 NP_964850.1 CDS LJ0994 NC_005362.1 895519 895743 R hypothetical protein complement(895519..895743) Lactobacillus johnsonii NCC 533 2743558 NP_964851.1 CDS LJ0995 NC_005362.1 895777 897609 D GTP-binding protein typA/bipA-like protein 895777..897609 Lactobacillus johnsonii NCC 533 2743445 NP_964852.1 CDS LJ0996 NC_005362.1 897723 898907 D contains cellcycle protein domain; hypothetical protein 897723..898907 Lactobacillus johnsonii NCC 533 2743609 NP_964853.1 CDS LJ0997 NC_005362.1 898910 899239 D hypothetical protein 898910..899239 Lactobacillus johnsonii NCC 533 2742037 NP_964854.1 CDS LJ0998 NC_005362.1 899236 899784 D contains N6-adenine-specific methylase domain; hypothetical protein 899236..899784 Lactobacillus johnsonii NCC 533 2743482 NP_964855.1 CDS coaD NC_005362.1 899786 900286 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 899786..900286 Lactobacillus johnsonii NCC 533 2743502 NP_964856.1 CDS LJ1000 NC_005362.1 900273 901283 D contains PDZ domain; hypothetical protein 900273..901283 Lactobacillus johnsonii NCC 533 2743675 NP_964857.1 CDS LJ1001 NC_005362.1 901340 902023 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 901340..902023 Lactobacillus johnsonii NCC 533 2743426 NP_964858.1 CDS LJ1002 NC_005362.1 901980 902927 D hypothetical protein 901980..902927 Lactobacillus johnsonii NCC 533 2743473 NP_964859.1 CDS LJ1003 NC_005362.1 902893 904263 D contains metallo-beta-lactamase domain; hypothetical protein 902893..904263 Lactobacillus johnsonii NCC 533 2743474 NP_964860.1 CDS LJ1004 NC_005362.1 904260 905249 D hypothetical protein 904260..905249 Lactobacillus johnsonii NCC 533 2742295 NP_964861.1 CDS rpsT NC_005362.1 905318 905575 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(905318..905575) Lactobacillus johnsonii NCC 533 2743477 NP_964862.1 CDS rpsO NC_005362.1 905770 906039 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 905770..906039 Lactobacillus johnsonii NCC 533 2742272 NP_964863.1 CDS LJ1007 NC_005362.1 906200 907975 D contains metallo-beta-lactamase superfamily and uncharacterized protein family UPF0036 domains; hypothetical protein 906200..907975 Lactobacillus johnsonii NCC 533 2742254 NP_964864.1 CDS LJ1008 NC_005362.1 907975 908832 D hypothetical protein 907975..908832 Lactobacillus johnsonii NCC 533 2743075 NP_964865.1 CDS tuf NC_005362.1 909010 910200 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 909010..910200 Lactobacillus johnsonii NCC 533 2742321 NP_964866.1 CDS tig NC_005362.1 910359 911708 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 910359..911708 Lactobacillus johnsonii NCC 533 2742271 NP_964867.1 CDS clpX NC_005362.1 911853 913118 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 911853..913118 Lactobacillus johnsonii NCC 533 2742416 NP_964868.1 CDS engB NC_005362.1 913118 913702 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 913118..913702 Lactobacillus johnsonii NCC 533 2741942 NP_964869.1 CDS LJ1013 NC_005362.1 913915 914391 D contains low molecular weight phosphotyrosine protein phosphatase domain; hypothetical protein 913915..914391 Lactobacillus johnsonii NCC 533 2742685 NP_964870.1 CDS LJ1014 NC_005362.1 914391 914906 D hypothetical protein 914391..914906 Lactobacillus johnsonii NCC 533 2743514 NP_964871.1 CDS LJ1015 NC_005362.1 915216 915866 D contains 2-hydroxychromene-2-carboxylate isomerase family domain; hypothetical protein 915216..915866 Lactobacillus johnsonii NCC 533 2742233 NP_964872.1 CDS LJ1016 NC_005362.1 916006 916539 D hypothetical protein 916006..916539 Lactobacillus johnsonii NCC 533 2742247 NP_964873.1 CDS LJ1017 NC_005362.1 916636 917904 D hypothetical protein 916636..917904 Lactobacillus johnsonii NCC 533 2742989 NP_964874.1 CDS LJ1018 NC_005362.1 917972 918637 D contains protein-disulfide isomerase domain; hypothetical protein 917972..918637 Lactobacillus johnsonii NCC 533 2742434 NP_964875.1 CDS LJ1019 NC_005362.1 918758 919609 D hypothetical protein 918758..919609 Lactobacillus johnsonii NCC 533 2742068 NP_964876.1 CDS LJ1020 NC_005362.1 919815 920297 D hypothetical protein 919815..920297 Lactobacillus johnsonii NCC 533 2743102 NP_964877.1 CDS LJ1021 NC_005362.1 920537 921541 D similar to transcriptional regulator lytR; hypothetical protein 920537..921541 Lactobacillus johnsonii NCC 533 2742702 NP_964878.1 CDS LJ1022 NC_005362.1 921548 922411 D hypothetical protein 921548..922411 Lactobacillus johnsonii NCC 533 2743178 NP_964879.1 CDS LJ1023 NC_005362.1 922422 923183 D putative tyrosine-protein kinase 922422..923183 Lactobacillus johnsonii NCC 533 2743535 NP_964880.1 CDS LJ1024 NC_005362.1 923190 923960 D hypothetical protein 923190..923960 Lactobacillus johnsonii NCC 533 2743376 NP_964881.1 CDS LJ1025 NC_005362.1 923988 924647 D undecaprenyl-phosphate galactosephosphotransferase 923988..924647 Lactobacillus johnsonii NCC 533 2743182 NP_964882.1 CDS LJ1026 NC_005362.1 924658 925434 D hypothetical protein 924658..925434 Lactobacillus johnsonii NCC 533 2743124 NP_964883.1 CDS LJ1027 NC_005362.1 925461 926561 D contains glycosyl transferases group 1 domain; hypothetical protein 925461..926561 Lactobacillus johnsonii NCC 533 2742166 NP_964884.1 CDS LJ1028 NC_005362.1 926558 927679 D contains glycosyl transferases group 1 domain; hypothetical protein 926558..927679 Lactobacillus johnsonii NCC 533 2742670 NP_964885.1 CDS LJ1029 NC_005362.1 927686 928780 D contains glycosyl transferases group 1 domain; hypothetical protein 927686..928780 Lactobacillus johnsonii NCC 533 2743253 NP_964886.1 CDS LJ1030 NC_005362.1 928798 929721 D contains glycosyl transferases group 2 domain; hypothetical protein 928798..929721 Lactobacillus johnsonii NCC 533 2742966 NP_964887.1 CDS LJ1031 NC_005362.1 929787 931022 D hypothetical protein 929787..931022 Lactobacillus johnsonii NCC 533 2742221 NP_964888.1 CDS LJ1032 NC_005362.1 931047 932165 D UDP-galactopyranose mutase 931047..932165 Lactobacillus johnsonii NCC 533 2743577 NP_964889.1 CDS LJ1033 NC_005362.1 932155 933057 D hypothetical protein 932155..933057 Lactobacillus johnsonii NCC 533 2743067 NP_964890.1 CDS LJ1034 NC_005362.1 933059 934486 D contains polysaccharide biosynthesis protein domain; hypothetical protein 933059..934486 Lactobacillus johnsonii NCC 533 2743081 NP_964891.1 CDS LJ1035 NC_005362.1 934533 935504 D hypothetical protein 934533..935504 Lactobacillus johnsonii NCC 533 2743175 NP_964892.1 CDS LJ1036 NC_005362.1 935671 935928 D hypothetical protein 935671..935928 Lactobacillus johnsonii NCC 533 2743370 NP_964893.1 CDS LJ1037 NC_005362.1 935886 936125 D hypothetical protein 935886..936125 Lactobacillus johnsonii NCC 533 2741948 NP_964894.1 CDS LJ1038 NC_005362.1 936107 936499 D hypothetical protein 936107..936499 Lactobacillus johnsonii NCC 533 2743621 NP_964895.1 CDS LJ1039 NC_005362.1 936757 937131 R hypothetical protein complement(936757..937131) Lactobacillus johnsonii NCC 533 2741966 NP_964896.1 CDS LJ1040 NC_005362.1 937890 938375 R putative transposase complement(937890..938375) Lactobacillus johnsonii NCC 533 2741917 NP_964897.1 CDS LJ1041 NC_005362.1 938753 939097 R putative transposase complement(938753..939097) Lactobacillus johnsonii NCC 533 2743035 NP_964898.1 CDS LJ1042 NC_005362.1 939602 940363 D hypothetical protein 939602..940363 Lactobacillus johnsonii NCC 533 2743303 NP_964899.1 CDS LJ1043 NC_005362.1 941004 941675 D hypothetical protein 941004..941675 Lactobacillus johnsonii NCC 533 2743618 NP_964900.1 CDS LJ1045 NC_005362.1 942219 943394 D hypothetical protein 942219..943394 Lactobacillus johnsonii NCC 533 2743490 NP_964901.1 CDS LJ1046 NC_005362.1 943391 943942 D hypothetical protein 943391..943942 Lactobacillus johnsonii NCC 533 2743583 NP_964902.1 CDS LJ1047 NC_005362.1 944377 946899 D hypothetical protein 944377..946899 Lactobacillus johnsonii NCC 533 2743624 NP_964903.1 CDS LJ1048 NC_005362.1 946936 948108 D contains bacterial regulatory proteins, merR family domain; hypothetical protein 946936..948108 Lactobacillus johnsonii NCC 533 2743470 NP_964904.1 CDS LJ1049 NC_005362.1 948239 949276 D dTDP-D-glucose 4,6-dehydratase 948239..949276 Lactobacillus johnsonii NCC 533 2743156 NP_964905.1 CDS LJ1050 NC_005362.1 949283 950167 D glucose-1-phosphate thymidylyltransferase 949283..950167 Lactobacillus johnsonii NCC 533 2742686 NP_964906.1 CDS LJ1051 NC_005362.1 950198 950806 D dTDP-4-dehydrorhamnose 3,5-epimerase 950198..950806 Lactobacillus johnsonii NCC 533 2743308 NP_964907.1 CDS LJ1052 NC_005362.1 950823 951809 D dTDP-4-dehydrorhamnose reductase 950823..951809 Lactobacillus johnsonii NCC 533 2741904 NP_964908.1 CDS LJ1053 NC_005362.1 952342 953091 D hypothetical protein 952342..953091 Lactobacillus johnsonii NCC 533 2742743 NP_964909.1 CDS LJ1054 NC_005362.1 953112 954290 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 953112..954290 Lactobacillus johnsonii NCC 533 2742419 NP_964910.1 CDS LJ1055 NC_005362.1 954498 956234 D contains SMC domain N terminal domain; hypothetical protein 954498..956234 Lactobacillus johnsonii NCC 533 2742154 NP_964911.1 CDS LJ1056 NC_005362.1 956224 957819 D contains UvrD/REP helicase domain; hypothetical protein 956224..957819 Lactobacillus johnsonii NCC 533 2742394 NP_964912.1 CDS LJ1057 NC_005362.1 958447 959364 D protease HtpX-like protein 958447..959364 Lactobacillus johnsonii NCC 533 2743231 NP_964913.1 CDS LJ1058 NC_005362.1 960072 960848 D hypothetical protein 960072..960848 Lactobacillus johnsonii NCC 533 2743250 NP_964914.1 CDS LJ1059 NC_005362.1 960914 961759 R hypothetical protein complement(960914..961759) Lactobacillus johnsonii NCC 533 2743740 NP_964915.1 CDS LJ1060 NC_005362.1 961911 962351 D contains NUDIX domain; hypothetical protein 961911..962351 Lactobacillus johnsonii NCC 533 2743045 NP_964916.1 CDS LJ1061 NC_005362.1 962380 963039 R hypothetical protein complement(962380..963039) Lactobacillus johnsonii NCC 533 2742996 NP_964917.1 CDS LJ1062 NC_005362.1 963244 963645 D hypothetical protein 963244..963645 Lactobacillus johnsonii NCC 533 2741998 NP_964918.1 CDS LJ1063 NC_005362.1 963734 964114 D hypothetical protein 963734..964114 Lactobacillus johnsonii NCC 533 2742440 NP_964919.1 CDS LJ1064 NC_005362.1 964337 965188 D hypothetical protein 964337..965188 Lactobacillus johnsonii NCC 533 2743491 NP_964920.1 CDS LJ1065 NC_005362.1 965459 966811 R contains amino acid permease domain; hypothetical protein complement(965459..966811) Lactobacillus johnsonii NCC 533 2743715 NP_964921.1 CDS LJ1066 NC_005362.1 967079 967720 D contains predicted nucleoside-diphosphate-sugar epimerase domain; hypothetical protein 967079..967720 Lactobacillus johnsonii NCC 533 2743571 NP_964922.1 CDS LJ1067 NC_005362.1 967749 968546 R contains phage integrase, N-terminal SAM-like domain; hypothetical protein complement(967749..968546) Lactobacillus johnsonii NCC 533 2742674 NP_964923.1 CDS LJ1068 NC_005362.1 968653 969264 R alkaline phosphatase like protein complement(968653..969264) Lactobacillus johnsonii NCC 533 2742441 NP_964924.1 CDS LJ1069 NC_005362.1 969273 970199 R contains inosine-uridine preferring nucleoside hydrolase domain; hypothetical protein complement(969273..970199) Lactobacillus johnsonii NCC 533 2742721 NP_964925.1 CDS uvrC NC_005362.1 970341 972143 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 970341..972143 Lactobacillus johnsonii NCC 533 2742401 NP_964926.1 CDS obgE NC_005362.1 972251 973537 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 972251..973537 Lactobacillus johnsonii NCC 533 2742713 NP_964927.1 CDS LJ1072 NC_005362.1 973567 975492 D contains DUF33 family domain; hypothetical protein 973567..975492 Lactobacillus johnsonii NCC 533 2742699 NP_964928.1 CDS LJ1073 NC_005362.1 975506 976435 D hypothetical protein 975506..976435 Lactobacillus johnsonii NCC 533 2742740 NP_964929.1 CDS LJ1074 NC_005362.1 976440 977234 D contains short chain dehydrogenase domain; hypothetical protein 976440..977234 Lactobacillus johnsonii NCC 533 2742199 NP_964930.1 CDS LJ1075 NC_005362.1 977241 977570 D hypothetical protein 977241..977570 Lactobacillus johnsonii NCC 533 2742645 NP_964931.1 CDS rpmF NC_005362.1 977687 977878 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 977687..977878 Lactobacillus johnsonii NCC 533 2742347 NP_964932.1 CDS LJ1076 NC_005362.1 977938 979503 D contains 5'-nucleotidase, catalytic and C-terminal domains; hypothetical protein 977938..979503 Lactobacillus johnsonii NCC 533 2742707 NP_964933.1 CDS LJ1077 NC_005362.1 979865 982981 D DNA polymerase III alpha subunit 979865..982981 Lactobacillus johnsonii NCC 533 2741881 NP_964934.1 CDS LJ1078 NC_005362.1 982911 983123 D hypothetical protein 982911..983123 Lactobacillus johnsonii NCC 533 2742635 NP_964935.1 CDS LJ1079 NC_005362.1 983155 984114 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 983155..984114 Lactobacillus johnsonii NCC 533 2742374 NP_964936.1 CDS LJ1080 NC_005362.1 984149 985918 D pyruvate kinase 984149..985918 Lactobacillus johnsonii NCC 533 2742197 NP_964937.1 CDS LJ1081 NC_005362.1 986031 986924 D hypothetical protein 986031..986924 Lactobacillus johnsonii NCC 533 2742284 NP_964938.1 CDS LJ1082 NC_005362.1 986914 987804 D integrase/recombinase XerD 986914..987804 Lactobacillus johnsonii NCC 533 2741951 NP_964939.1 CDS LJ1083 NC_005362.1 987810 988172 D hypothetical protein 987810..988172 Lactobacillus johnsonii NCC 533 2741968 NP_964940.1 CDS LJ1084 NC_005362.1 988165 988908 D contains uncharacterized ACR, COG1354 domain; hypothetical protein 988165..988908 Lactobacillus johnsonii NCC 533 2743328 NP_964941.1 CDS LJ1085 NC_005362.1 988898 989488 D contains uncharacterized ACR domain; hypothetical protein 988898..989488 Lactobacillus johnsonii NCC 533 2743419 NP_964942.1 CDS LJ1086 NC_005362.1 989490 990209 D ribosomal large subunit pseudouridine synthase B 989490..990209 Lactobacillus johnsonii NCC 533 2743457 NP_964943.1 CDS LJ1087 NC_005362.1 990270 991037 D contains LysM domain; hypothetical protein 990270..991037 Lactobacillus johnsonii NCC 533 2743586 NP_964944.1 CDS LJ1088 NC_005362.1 991302 991895 D hypothetical protein 991302..991895 Lactobacillus johnsonii NCC 533 2743723 NP_964945.1 CDS cmk NC_005362.1 991976 992668 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 991976..992668 Lactobacillus johnsonii NCC 533 2743459 NP_964946.1 CDS rpsA NC_005362.1 992731 993933 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 992731..993933 Lactobacillus johnsonii NCC 533 2743468 NP_964947.1 CDS engA NC_005362.1 994008 995315 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 994008..995315 Lactobacillus johnsonii NCC 533 2743587 NP_964948.1 CDS LJ1092 NC_005362.1 995481 995756 D DNA-binding protein HU 995481..995756 Lactobacillus johnsonii NCC 533 2743471 NP_964949.1 CDS LJ1093 NC_005362.1 995815 997119 D contains TPR Domain; hypothetical protein 995815..997119 Lactobacillus johnsonii NCC 533 2743691 NP_964950.1 CDS LJ1094 NC_005362.1 997285 999105 D hypothetical protein 997285..999105 Lactobacillus johnsonii NCC 533 2743622 NP_964951.1 CDS LJ1095 NC_005362.1 999125 1000192 D hypothetical protein 999125..1000192 Lactobacillus johnsonii NCC 533 2742461 NP_964952.1 CDS LJ1096 NC_005362.1 1000180 1002423 D hypothetical protein 1000180..1002423 Lactobacillus johnsonii NCC 533 2743580 NP_964953.1 CDS LJ1097 NC_005362.1 1002714 1003616 D hypothetical protein 1002714..1003616 Lactobacillus johnsonii NCC 533 2743428 NP_964954.1 CDS LJ1098 NC_005362.1 1003799 1004545 D contains ion transport protein domain; hypothetical protein 1003799..1004545 Lactobacillus johnsonii NCC 533 2742438 NP_964955.1 CDS LJ1099 NC_005362.1 1004626 1005516 R contains DUF161 family domain; hypothetical protein complement(1004626..1005516) Lactobacillus johnsonii NCC 533 2742797 NP_964956.1 CDS LJ1100 NC_005362.1 1005574 1006770 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 1005574..1006770 Lactobacillus johnsonii NCC 533 2742772 NP_964957.1 CDS LJ1101 NC_005362.1 1006819 1007484 R hemolysin-like protein complement(1006819..1007484) Lactobacillus johnsonii NCC 533 2742482 NP_964958.1 CDS LJ1102 NC_005362.1 1007629 1008486 D contains DUF194 family domain; hypothetical protein 1007629..1008486 Lactobacillus johnsonii NCC 533 2743437 NP_964959.1 CDS LJ1103 NC_005362.1 1008486 1008713 D hypothetical protein 1008486..1008713 Lactobacillus johnsonii NCC 533 2742391 NP_964960.1 CDS LJ1104 NC_005362.1 1008721 1010172 D hypothetical protein 1008721..1010172 Lactobacillus johnsonii NCC 533 2743596 NP_964961.1 CDS LJ1105 NC_005362.1 1010175 1011014 D contains GTPase domain; hypothetical protein 1010175..1011014 Lactobacillus johnsonii NCC 533 2742495 NP_964962.1 CDS rnhB NC_005362.1 1011011 1011763 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1011011..1011763 Lactobacillus johnsonii NCC 533 2742508 NP_964963.1 CDS LJ1107 NC_005362.1 1011816 1012661 D SMF protein 1011816..1012661 Lactobacillus johnsonii NCC 533 2741847 NP_964964.1 CDS LJ1108 NC_005362.1 1012727 1014808 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1012727..1014808 Lactobacillus johnsonii NCC 533 2742866 NP_964965.1 CDS LJ1109 NC_005362.1 1014906 1016222 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1014906..1016222 Lactobacillus johnsonii NCC 533 2743499 NP_964966.1 CDS LJ1110 NC_005362.1 1016225 1017148 D integrase/recombinase CodV 1016225..1017148 Lactobacillus johnsonii NCC 533 2742766 NP_964967.1 CDS LJ1111 NC_005362.1 1017153 1017677 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1017153..1017677 Lactobacillus johnsonii NCC 533 2742857 NP_964968.1 CDS hslU NC_005362.1 1017688 1019082 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1017688..1019082 Lactobacillus johnsonii NCC 533 2742381 NP_964969.1 CDS LJ1113 NC_005362.1 1019110 1019997 D hypothetical protein 1019110..1019997 Lactobacillus johnsonii NCC 533 2742853 NP_964970.1 CDS LJ1114 NC_005362.1 1020019 1020660 D hypothetical protein 1020019..1020660 Lactobacillus johnsonii NCC 533 2742848 NP_964971.1 CDS LJ1115 NC_005362.1 1020812 1021375 D contains predicted membrane-bound metal-dependent hydrolase domain; hypothetical protein 1020812..1021375 Lactobacillus johnsonii NCC 533 2742850 NP_964972.1 CDS LJ1116 NC_005362.1 1021642 1022103 D hypothetical protein 1021642..1022103 Lactobacillus johnsonii NCC 533 2743454 NP_964973.1 CDS LJ1117 NC_005362.1 1022300 1023331 D hypothetical protein 1022300..1023331 Lactobacillus johnsonii NCC 533 2742846 NP_964974.1 CDS LJ1118 NC_005362.1 1023378 1024247 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(1023378..1024247) Lactobacillus johnsonii NCC 533 2743616 NP_964975.1 CDS LJ1119 NC_005362.1 1024371 1024721 D hypothetical protein 1024371..1024721 Lactobacillus johnsonii NCC 533 2742600 NP_964976.1 CDS LJ1120 NC_005362.1 1024927 1025967 D contains zinc-binding dehydrogenase domain; hypothetical protein 1024927..1025967 Lactobacillus johnsonii NCC 533 2742677 NP_964977.1 CDS LJ1121 NC_005362.1 1026360 1027211 D hypothetical protein 1026360..1027211 Lactobacillus johnsonii NCC 533 2742851 NP_964978.1 CDS LJ1122 NC_005362.1 1027888 1029393 D ABC transporter ATPase component 1027888..1029393 Lactobacillus johnsonii NCC 533 2742105 NP_964979.1 CDS LJ1123 NC_005362.1 1029474 1029932 R hypothetical protein complement(1029474..1029932) Lactobacillus johnsonii NCC 533 2742064 NP_964980.1 CDS LJ1124 NC_005362.1 1030121 1031800 D catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 1030121..1031800 Lactobacillus johnsonii NCC 533 2742056 NP_964981.1 CDS LJ1125 NC_005362.1 1031800 1032534 D alpha-acetolactate decarboxylase 1031800..1032534 Lactobacillus johnsonii NCC 533 2742054 NP_964982.1 CDS LJ1126 NC_005362.1 1032580 1032993 R hypothetical protein complement(1032580..1032993) Lactobacillus johnsonii NCC 533 2742097 NP_964983.1 CDS LJ1127 NC_005362.1 1032995 1033429 R hypothetical protein complement(1032995..1033429) Lactobacillus johnsonii NCC 533 2742080 NP_964984.1 CDS LJ1128 NC_005362.1 1033906 1048110 D contains gram positive anchor domain; hypothetical protein 1033906..1048110 Lactobacillus johnsonii NCC 533 2742071 NP_964985.1 CDS LJ1129 NC_005362.1 1048219 1048905 R hypothetical protein complement(1048219..1048905) Lactobacillus johnsonii NCC 533 2742076 NP_964986.1 CDS LJ1130 NC_005362.1 1049630 1050229 D contains haloacid dehalogenase-like domain; hypothetical protein 1049630..1050229 Lactobacillus johnsonii NCC 533 2743109 NP_964987.1 CDS LJ1131 NC_005362.1 1050252 1050875 D contains MutT-like domain; hypothetical protein 1050252..1050875 Lactobacillus johnsonii NCC 533 2742084 NP_964988.1 CDS LJ1132 NC_005362.1 1051015 1051710 D two-component system response regulator 1051015..1051710 Lactobacillus johnsonii NCC 533 2742108 NP_964989.1 CDS LJ1133 NC_005362.1 1051703 1053055 D two-component system histidine kinase 1051703..1053055 Lactobacillus johnsonii NCC 533 2741860 NP_964990.1 CDS LJ1134 NC_005362.1 1053186 1053806 D hypothetical protein 1053186..1053806 Lactobacillus johnsonii NCC 533 2741851 NP_964991.1 CDS LJ1135 NC_005362.1 1053844 1054461 D contains zinc-binding dehydrogenase domain; hypothetical protein 1053844..1054461 Lactobacillus johnsonii NCC 533 2743041 NP_964992.1 CDS LJ1136 NC_005362.1 1054623 1055369 D hypothetical protein 1054623..1055369 Lactobacillus johnsonii NCC 533 2742121 NP_964993.1 CDS LJ1137 NC_005362.1 1055642 1057150 D branched-chain amino acid transport system carrier protein 1055642..1057150 Lactobacillus johnsonii NCC 533 2743314 NP_964994.1 CDS LJ1138 NC_005362.1 1057350 1058144 D ABC transporter ATPase component 1057350..1058144 Lactobacillus johnsonii NCC 533 2743100 NP_964995.1 CDS LJ1139 NC_005362.1 1058153 1059358 D contains UPF0051 domain; hypothetical protein 1058153..1059358 Lactobacillus johnsonii NCC 533 2742101 NP_964996.1 CDS LJ1140 NC_005362.1 1059339 1060577 D selenocysteine lyase 1059339..1060577 Lactobacillus johnsonii NCC 533 2743072 NP_964997.1 CDS LJ1141 NC_005362.1 1060564 1061022 D NifU-like protein 1060564..1061022 Lactobacillus johnsonii NCC 533 2742112 NP_964998.1 CDS LJ1142 NC_005362.1 1061015 1062418 D contains UPF0051 domain; hypothetical protein 1061015..1062418 Lactobacillus johnsonii NCC 533 2743154 NP_964999.1 CDS LJ1143 NC_005362.1 1062418 1062741 D contains DUF59 domain; hypothetical protein 1062418..1062741 Lactobacillus johnsonii NCC 533 2741862 NP_965000.1 CDS LJ1144 NC_005362.1 1062750 1064249 D manganese transport protein MntH2 1062750..1064249 Lactobacillus johnsonii NCC 533 2743108 NP_965001.1 CDS LJ1145 NC_005362.1 1064318 1065058 D contains SAM-dependent methyltransferase domain; hypothetical protein 1064318..1065058 Lactobacillus johnsonii NCC 533 2743104 NP_965002.1 CDS LJ1146 NC_005362.1 1065441 1065680 R hypothetical protein complement(1065441..1065680) Lactobacillus johnsonii NCC 533 2743158 NP_965003.1 CDS LJ1147 NC_005362.1 1065946 1066923 D conjugated bile salt hydrolase 1065946..1066923 Lactobacillus johnsonii NCC 533 2743183 NP_965004.1 CDS LJ1148 NC_005362.1 1067068 1067841 R hypothetical protein complement(1067068..1067841) Lactobacillus johnsonii NCC 533 2743192 NP_965005.1 CDS LJ1149 NC_005362.1 1067865 1068167 R hypothetical protein complement(1067865..1068167) Lactobacillus johnsonii NCC 533 2743214 NP_965006.1 CDS LJ1150 NC_005362.1 1068391 1070913 D excinuclease ATPase subunit 1068391..1070913 Lactobacillus johnsonii NCC 533 2743180 NP_965007.1 CDS LJ1151 NC_005362.1 1071123 1071575 D hypothetical protein 1071123..1071575 Lactobacillus johnsonii NCC 533 2743201 NP_965008.1 CDS LJ1152 NC_005362.1 1071642 1071974 R contains DUF174 domain; hypothetical protein complement(1071642..1071974) Lactobacillus johnsonii NCC 533 2743218 NP_965009.1 CDS LJ1153 NC_005362.1 1072108 1072602 R thiol peroxidase complement(1072108..1072602) Lactobacillus johnsonii NCC 533 2743292 NP_965010.1 CDS LJ1154 NC_005362.1 1072763 1073212 D hypothetical protein 1072763..1073212 Lactobacillus johnsonii NCC 533 2743119 NP_965011.1 CDS LJ1155 NC_005362.1 1073605 1076343 D Mg(2+) transport ATPase, P-type 2 1073605..1076343 Lactobacillus johnsonii NCC 533 2743252 NP_965012.1 CDS LJ1156 NC_005362.1 1076475 1076912 D contains bacterial regulatory proteins, marR family domain; hypothetical protein 1076475..1076912 Lactobacillus johnsonii NCC 533 2742985 NP_965013.1 CDS LJ1157 NC_005362.1 1076997 1078748 D ABC transporter ATPase and permease components 1076997..1078748 Lactobacillus johnsonii NCC 533 2742960 NP_965014.1 CDS LJ1158 NC_005362.1 1078872 1079693 D reductase 1078872..1079693 Lactobacillus johnsonii NCC 533 2742616 NP_965015.1 CDS LJ1159 NC_005362.1 1079774 1080037 R hypothetical protein complement(1079774..1080037) Lactobacillus johnsonii NCC 533 2742586 NP_965016.1 CDS LJ1160 NC_005362.1 1080153 1081415 D contains ATPase family associated with various cellular activities domain; recombination factor protein RarA 1080153..1081415 Lactobacillus johnsonii NCC 533 2742675 NP_965017.1 CDS LJ1161 NC_005362.1 1081467 1082381 D hypothetical protein 1081467..1082381 Lactobacillus johnsonii NCC 533 2742573 NP_965018.1 CDS LJ1162 NC_005362.1 1082399 1082629 D hypothetical protein 1082399..1082629 Lactobacillus johnsonii NCC 533 2742824 NP_965019.1 CDS LJ1163 NC_005362.1 1082760 1083476 D contains UPF0005 domain; hypothetical protein 1082760..1083476 Lactobacillus johnsonii NCC 533 2742835 NP_965020.1 CDS LJ1164 NC_005362.1 1083774 1084883 D hypothetical protein 1083774..1084883 Lactobacillus johnsonii NCC 533 2742826 NP_965021.1 CDS LJ1165 NC_005362.1 1084880 1086133 D hypothetical protein 1084880..1086133 Lactobacillus johnsonii NCC 533 2743360 NP_965022.1 CDS LJ1166 NC_005362.1 1086140 1087009 D ABC transporter ATPase component 1086140..1087009 Lactobacillus johnsonii NCC 533 2742968 NP_965023.1 CDS LJ1167 NC_005362.1 1087128 1088003 D reductase 1087128..1088003 Lactobacillus johnsonii NCC 533 2743004 NP_965024.1 CDS LJ1168 NC_005362.1 1088139 1088753 D galactoside O-acetyltransferase 1088139..1088753 Lactobacillus johnsonii NCC 533 2743241 NP_965025.1 CDS LJ1169 NC_005362.1 1088856 1089512 R contains DUF205 domain; hypothetical protein complement(1088856..1089512) Lactobacillus johnsonii NCC 533 2743025 NP_965026.1 CDS LJ1170 NC_005362.1 1089612 1091570 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1089612..1091570 Lactobacillus johnsonii NCC 533 2743371 NP_965027.1 CDS LJ1171 NC_005362.1 1091587 1094067 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1091587..1094067 Lactobacillus johnsonii NCC 533 2743079 NP_965028.1 CDS LJ1172 NC_005362.1 1094310 1095263 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1094310..1095263 Lactobacillus johnsonii NCC 533 2742538 NP_965029.1 CDS LJ1173 NC_005362.1 1095382 1096317 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 1095382..1096317 Lactobacillus johnsonii NCC 533 2742241 NP_965030.1 CDS LJ1174 NC_005362.1 1096388 1098184 D ATP-dependent DNA helicase RecQ 1096388..1098184 Lactobacillus johnsonii NCC 533 2743534 NP_965031.1 CDS LJ1175 NC_005362.1 1098246 1098833 D contains cyclophilin type peptidyl-prolyl cis-trans isomerase domain; hypothetical protein 1098246..1098833 Lactobacillus johnsonii NCC 533 2743396 NP_965032.1 CDS LJ1176 NC_005362.1 1098900 1099595 D hypothetical protein 1098900..1099595 Lactobacillus johnsonii NCC 533 2742945 NP_965033.1 CDS xerS NC_005362.1 1100907 1101977 D contains phage integrase domain; site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1100907..1101977 Lactobacillus johnsonii NCC 533 2743340 NP_965034.1 CDS LJ1178 NC_005362.1 1102048 1102929 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1102048..1102929 Lactobacillus johnsonii NCC 533 2743383 NP_965035.1 CDS LJ1179 NC_005362.1 1102986 1104098 R hypothetical protein complement(1102986..1104098) Lactobacillus johnsonii NCC 533 2743377 NP_965036.1 CDS LJ1180 NC_005362.1 1104183 1105070 R contains DUF194 domain; hypothetical protein complement(1104183..1105070) Lactobacillus johnsonii NCC 533 2742908 NP_965037.1 CDS LJ1181 NC_005362.1 1105186 1105608 R contains bacterial regulatory marR domain; hypothetical protein complement(1105186..1105608) Lactobacillus johnsonii NCC 533 2743357 NP_965038.1 CDS LJ1182 NC_005362.1 1105784 1107475 D hypothetical protein 1105784..1107475 Lactobacillus johnsonii NCC 533 2742497 NP_965039.1 CDS carB NC_005362.1 1107548 1110712 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1107548..1110712) Lactobacillus johnsonii NCC 533 2742956 NP_965040.1 CDS LJ1185 NC_005362.1 1110716 1111771 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1110716..1111771) Lactobacillus johnsonii NCC 533 2742809 NP_965041.1 CDS LJ1186 NC_005362.1 1111775 1112689 R ribosomal large subunit pseudouridine synthase D complement(1111775..1112689) Lactobacillus johnsonii NCC 533 2742810 NP_965042.1 CDS LJ1187 NC_005362.1 1112704 1113168 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1112704..1113168) Lactobacillus johnsonii NCC 533 2742804 NP_965043.1 CDS LJ1188 NC_005362.1 1113168 1114841 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1113168..1114841) Lactobacillus johnsonii NCC 533 2742818 NP_965044.1 CDS LJ1189 NC_005362.1 1114844 1115188 R hypothetical protein complement(1114844..1115188) Lactobacillus johnsonii NCC 533 2743584 NP_965045.1 CDS LJ1190 NC_005362.1 1115321 1116244 D contains DUF194 domain; hypothetical protein 1115321..1116244 Lactobacillus johnsonii NCC 533 2741872 NP_965046.1 CDS LJ1191 NC_005362.1 1116331 1117458 D hypothetical protein 1116331..1117458 Lactobacillus johnsonii NCC 533 2742570 NP_965047.1 CDS LJ1192 NC_005362.1 1117507 1118739 R contains predicted phosphohydrolase domain; hypothetical protein complement(1117507..1118739) Lactobacillus johnsonii NCC 533 2742185 NP_965048.1 CDS LJ1193 NC_005362.1 1118745 1119869 R contains UPF0020 domain; hypothetical protein complement(1118745..1119869) Lactobacillus johnsonii NCC 533 2742208 NP_965049.1 CDS LJ1194 NC_005362.1 1120335 1120772 R hypothetical protein complement(1120335..1120772) Lactobacillus johnsonii NCC 533 2742192 NP_965050.1 CDS LJ1195 NC_005362.1 1120978 1121541 R hypothetical protein complement(1120978..1121541) Lactobacillus johnsonii NCC 533 2742355 NP_965051.1 CDS recU NC_005362.1 1121603 1122220 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1121603..1122220 Lactobacillus johnsonii NCC 533 2742646 NP_965052.1 CDS LJ1197 NC_005362.1 1122231 1124618 D penicillin-binding protein 1A 1122231..1124618 Lactobacillus johnsonii NCC 533 2742327 NP_965053.1 CDS LJ1198 NC_005362.1 1124690 1125319 R endonuclease III complement(1124690..1125319) Lactobacillus johnsonii NCC 533 2742341 NP_965054.1 CDS LJ1199 NC_005362.1 1125329 1125973 R similar to DNA replication protein DnaD; hypothetical protein complement(1125329..1125973) Lactobacillus johnsonii NCC 533 2742560 NP_965055.1 CDS asnC NC_005362.1 1126045 1127343 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1126045..1127343) Lactobacillus johnsonii NCC 533 2742535 NP_965056.1 CDS LJ1201 NC_005362.1 1127412 1127906 R hypothetical protein complement(1127412..1127906) Lactobacillus johnsonii NCC 533 2742282 NP_965057.1 CDS LJ1202 NC_005362.1 1127899 1130715 R contains exonuclease domain; hypothetical protein complement(1127899..1130715) Lactobacillus johnsonii NCC 533 2742691 NP_965058.1 CDS LJ1203 NC_005362.1 1130740 1134354 R contains UvrD/REP helicase domain; hypothetical protein complement(1130740..1134354) Lactobacillus johnsonii NCC 533 2742385 NP_965059.1 CDS LJ1204 NC_005362.1 1134355 1137831 R hypothetical protein complement(1134355..1137831) Lactobacillus johnsonii NCC 533 2742426 NP_965060.1 CDS LJ1205 NC_005362.1 1137918 1138835 D mevalonate kinase 1137918..1138835 Lactobacillus johnsonii NCC 533 2743427 NP_965061.1 CDS LJ1206 NC_005362.1 1138835 1139800 D mevalonate pyrophosphate decarboxylase 1138835..1139800 Lactobacillus johnsonii NCC 533 2742583 NP_965062.1 CDS LJ1207 NC_005362.1 1139835 1140908 D mevalonate kinase 1139835..1140908 Lactobacillus johnsonii NCC 533 2742609 NP_965063.1 CDS LJ1208 NC_005362.1 1140920 1141945 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1140920..1141945 Lactobacillus johnsonii NCC 533 2742768 NP_965064.1 CDS LJ1209 NC_005362.1 1142139 1143722 R ABC transporter ATPase and permease components complement(1142139..1143722) Lactobacillus johnsonii NCC 533 2742512 NP_965065.1 CDS LJ1210 NC_005362.1 1143722 1145302 R ABC transporter ATPase and permease components complement(1143722..1145302) Lactobacillus johnsonii NCC 533 2742962 NP_965066.1 CDS LJ1211 NC_005362.1 1145652 1146866 D major facilitator superfamily permease 1145652..1146866 Lactobacillus johnsonii NCC 533 2742916 NP_965067.1 CDS LJ1212 NC_005362.1 1146994 1147800 D contains aminoglycoside 3-N-acetyltransferase domain; hypothetical protein 1146994..1147800 Lactobacillus johnsonii NCC 533 2743026 NP_965068.1 CDS LJ1213 NC_005362.1 1147870 1148760 R hypothetical protein complement(1147870..1148760) Lactobacillus johnsonii NCC 533 2741961 NP_965069.1 CDS LJ1214 NC_005362.1 1148836 1149231 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(1148836..1149231) Lactobacillus johnsonii NCC 533 2743394 NP_965070.1 CDS LJ1215 NC_005362.1 1149843 1150694 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1149843..1150694 Lactobacillus johnsonii NCC 533 2743234 NP_965071.1 CDS LJ1216 NC_005362.1 1150835 1151284 R hypothetical protein complement(1150835..1151284) Lactobacillus johnsonii NCC 533 2743347 NP_965072.1 CDS LJ1217 NC_005362.1 1151277 1152059 R contains phosphorylase domain; hypothetical protein complement(1151277..1152059) Lactobacillus johnsonii NCC 533 2742492 NP_965073.1 CDS LJ1218 NC_005362.1 1152072 1152851 R contains phosphorylase domain; hypothetical protein complement(1152072..1152851) Lactobacillus johnsonii NCC 533 2743700 NP_965074.1 CDS LJ1219 NC_005362.1 1153008 1153472 R contains MutT-like domain; hypothetical protein complement(1153008..1153472) Lactobacillus johnsonii NCC 533 2742383 NP_965075.1 CDS LJ1220 NC_005362.1 1153473 1154294 R hypothetical protein complement(1153473..1154294) Lactobacillus johnsonii NCC 533 2742979 NP_965076.1 CDS LJ1221 NC_005362.1 1154278 1154790 R contains phosphoribulokinase / uridine kinase domain; hypothetical protein complement(1154278..1154790) Lactobacillus johnsonii NCC 533 2741959 NP_965077.1 CDS LJ1222 NC_005362.1 1154818 1155339 R hypothetical protein complement(1154818..1155339) Lactobacillus johnsonii NCC 533 2741978 NP_965078.1 CDS LJ1223 NC_005362.1 1155330 1156001 R hypothetical protein complement(1155330..1156001) Lactobacillus johnsonii NCC 533 2741960 NP_965079.1 CDS LJ1224 NC_005362.1 1156024 1156797 R contains predicted hydrolase or acyltransferase domain; hypothetical protein complement(1156024..1156797) Lactobacillus johnsonii NCC 533 2741986 NP_965080.1 CDS LJ1225 NC_005362.1 1156812 1157426 R contains MutT-like domain; hypothetical protein complement(1156812..1157426) Lactobacillus johnsonii NCC 533 2741995 NP_965081.1 CDS LJ1226 NC_005362.1 1157416 1157913 R contains acetyltransferase (GNAT) domain; hypothetical protein complement(1157416..1157913) Lactobacillus johnsonii NCC 533 2743541 NP_965082.1 CDS LJ1227 NC_005362.1 1157931 1158452 R contains acetyltransferase (GNAT) domain; hypothetical protein complement(1157931..1158452) Lactobacillus johnsonii NCC 533 2741997 NP_965083.1 CDS LJ1228 NC_005362.1 1158601 1159347 R contains alpha/beta hydrolase domain; hypothetical protein complement(1158601..1159347) Lactobacillus johnsonii NCC 533 2742006 NP_965084.1 CDS LJ1229 NC_005362.1 1159399 1160607 R hypothetical protein complement(1159399..1160607) Lactobacillus johnsonii NCC 533 2741999 NP_965085.1 CDS LJ1230 NC_005362.1 1160977 1161606 R hypothetical protein complement(1160977..1161606) Lactobacillus johnsonii NCC 533 2742031 NP_965086.1 CDS LJ1231 NC_005362.1 1161750 1162043 R hypothetical protein complement(1161750..1162043) Lactobacillus johnsonii NCC 533 2742038 NP_965087.1 CDS LJ1232 NC_005362.1 1162251 1162943 R hypothetical protein complement(1162251..1162943) Lactobacillus johnsonii NCC 533 2743172 NP_965088.1 CDS LJ1233 NC_005362.1 1162940 1163302 R hypothetical protein complement(1162940..1163302) Lactobacillus johnsonii NCC 533 2742016 NP_965089.1 CDS LJ1234 NC_005362.1 1163306 1163602 R hypothetical protein complement(1163306..1163602) Lactobacillus johnsonii NCC 533 2742018 NP_965090.1 CDS LJ1235 NC_005362.1 1163613 1164074 R contains HIT family hydrolase domain; hypothetical protein complement(1163613..1164074) Lactobacillus johnsonii NCC 533 2742055 NP_965091.1 CDS LJ1236 NC_005362.1 1164095 1164547 R contains acetyltransferase (GNAT) domain; hypothetical protein complement(1164095..1164547) Lactobacillus johnsonii NCC 533 2742446 NP_965092.1 CDS LJ1237 NC_005362.1 1164643 1165110 D hypothetical protein 1164643..1165110 Lactobacillus johnsonii NCC 533 2743603 NP_965093.1 CDS LJ1238 NC_005362.1 1165163 1165621 D hypothetical protein 1165163..1165621 Lactobacillus johnsonii NCC 533 2743444 NP_965094.1 CDS LJ1239 NC_005362.1 1165605 1166150 D contains acetyltransferase domain; hypothetical protein 1165605..1166150 Lactobacillus johnsonii NCC 533 2743682 NP_965095.1 CDS LJ1240 NC_005362.1 1166334 1166609 D DNA-damage-inducible protein J 1166334..1166609 Lactobacillus johnsonii NCC 533 2742860 NP_965096.1 CDS LJ1241 NC_005362.1 1166609 1166914 D hypothetical protein 1166609..1166914 Lactobacillus johnsonii NCC 533 2743456 NP_965097.1 CDS LJ1242 NC_005362.1 1167126 1167461 R hypothetical protein complement(1167126..1167461) Lactobacillus johnsonii NCC 533 2743298 NP_965098.1 CDS LJ1243 NC_005362.1 1167635 1169212 D ABC transporter ATPase and permease components 1167635..1169212 Lactobacillus johnsonii NCC 533 2743284 NP_965099.1 CDS LJ1244 NC_005362.1 1169277 1169759 R contains nitroreductase domain; hypothetical protein complement(1169277..1169759) Lactobacillus johnsonii NCC 533 2743190 NP_965100.1 CDS LJ1245 NC_005362.1 1169938 1171119 D major facilitator superfamily permease 1169938..1171119 Lactobacillus johnsonii NCC 533 2743319 NP_965101.1 CDS eno NC_005362.1 1171209 1172495 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1171209..1172495) Lactobacillus johnsonii NCC 533 2742995 NP_965102.1 CDS LJ1247 NC_005362.1 1172700 1174283 R ABC transporter ATPase and permease components complement(1172700..1174283) Lactobacillus johnsonii NCC 533 2743315 NP_965103.1 CDS LJ1248 NC_005362.1 1174286 1174747 R ABC transporter ATPase component complement(1174286..1174747) Lactobacillus johnsonii NCC 533 2742542 NP_965104.1 CDS LJ1249 NC_005362.1 1174836 1175876 R ABC transporter ATPase and permease components complement(1174836..1175876) Lactobacillus johnsonii NCC 533 2742207 NP_965105.1 CDS LJ1250 NC_005362.1 1176180 1177046 D contains SPFH domain / Band 7 domain; hypothetical protein 1176180..1177046 Lactobacillus johnsonii NCC 533 2742660 NP_965106.1 CDS LJ1251 NC_005362.1 1177308 1178438 R glycerate kinase complement(1177308..1178438) Lactobacillus johnsonii NCC 533 2742358 NP_965107.1 CDS LJ1252 NC_005362.1 1178542 1179039 D hypothetical protein 1178542..1179039 Lactobacillus johnsonii NCC 533 2741883 NP_965108.1 CDS LJ1253 NC_005362.1 1179193 1179585 R hypothetical protein complement(1179193..1179585) Lactobacillus johnsonii NCC 533 2742307 NP_965109.1 CDS LJ1254 NC_005362.1 1179659 1180582 R contains NADH:flavin oxidoreductase / NADH oxidase domain; hypothetical protein complement(1179659..1180582) Lactobacillus johnsonii NCC 533 2742334 NP_965110.1 CDS LJ1255 NC_005362.1 1180563 1180823 R hypothetical protein complement(1180563..1180823) Lactobacillus johnsonii NCC 533 2742735 NP_965111.1 CDS LJ1256 NC_005362.1 1180916 1181560 R contains nitroreductase domain; hypothetical protein complement(1180916..1181560) Lactobacillus johnsonii NCC 533 2742752 NP_965112.1 CDS LJ1257 NC_005362.1 1181672 1183204 R hypothetical protein complement(1181672..1183204) Lactobacillus johnsonii NCC 533 2742299 NP_965113.1 CDS LJ1258 NC_005362.1 1183219 1184217 R hypothetical protein complement(1183219..1184217) Lactobacillus johnsonii NCC 533 2743652 NP_965114.1 CDS LJ1259 NC_005362.1 1184144 1184446 R hypothetical protein complement(1184144..1184446) Lactobacillus johnsonii NCC 533 2742731 NP_965115.1 CDS LJ1260 NC_005362.1 1184615 1185571 D contains bacterial regulatory lacI domain; hypothetical protein 1184615..1185571 Lactobacillus johnsonii NCC 533 2742530 NP_965116.1 CDS LJ1261 NC_005362.1 1185633 1187825 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucoside-specific complement(1185633..1187825) Lactobacillus johnsonii NCC 533 2742357 NP_965117.1 CDS LJ1262 NC_005362.1 1187831 1188673 R contains transcriptional antiterminator bglG domain; hypothetical protein complement(1187831..1188673) Lactobacillus johnsonii NCC 533 2742158 NP_965118.1 CDS LJ1263 NC_005362.1 1188838 1190136 R hypothetical protein complement(1188838..1190136) Lactobacillus johnsonii NCC 533 2742163 NP_965119.1 CDS LJ1264 NC_005362.1 1190165 1191625 R hypothetical protein complement(1190165..1191625) Lactobacillus johnsonii NCC 533 2742178 NP_965120.1 CDS LJ1265 NC_005362.1 1191726 1192745 R contains bacterial regulatory lacI domain; hypothetical protein complement(1191726..1192745) Lactobacillus johnsonii NCC 533 2742729 NP_965121.1 CDS LJ1266 NC_005362.1 1192879 1193712 D transketolase 1192879..1193712 Lactobacillus johnsonii NCC 533 2741930 NP_965122.1 CDS LJ1267 NC_005362.1 1193705 1194646 D transketolase 1193705..1194646 Lactobacillus johnsonii NCC 533 2742287 NP_965123.1 CDS LJ1268 NC_005362.1 1194657 1196108 D glycerol kinase 1194657..1196108 Lactobacillus johnsonii NCC 533 2742525 NP_965124.1 CDS LJ1269 NC_005362.1 1196160 1198103 R neutral endopeptidase complement(1196160..1198103) Lactobacillus johnsonii NCC 533 2742276 NP_965125.1 CDS LJ1270 NC_005362.1 1198318 1198992 R hypothetical protein complement(1198318..1198992) Lactobacillus johnsonii NCC 533 2742396 NP_965126.1 CDS LJ1271 NC_005362.1 1199047 1200171 D contains glycosyl transferase group 1 domain; hypothetical protein 1199047..1200171 Lactobacillus johnsonii NCC 533 2743637 NP_965127.1 CDS LJ1272 NC_005362.1 1200239 1201816 D phosphoenolpyruvate carboxylase 1200239..1201816 Lactobacillus johnsonii NCC 533 2742377 NP_965128.1 CDS LJ1273 NC_005362.1 1201820 1202977 D phosphoenolpyruvate carboxylase 1201820..1202977 Lactobacillus johnsonii NCC 533 2743605 NP_965129.1 CDS LJ1274 NC_005362.1 1203000 1203548 D contains isochorismatase domain; hypothetical protein 1203000..1203548 Lactobacillus johnsonii NCC 533 2743681 NP_965130.1 CDS LJ1275 NC_005362.1 1203599 1204135 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase complement(1203599..1204135) Lactobacillus johnsonii NCC 533 2743689 NP_965131.1 CDS carB NC_005362.1 1204168 1207356 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1204168..1207356) Lactobacillus johnsonii NCC 533 2742469 NP_965132.1 CDS LJ1277 NC_005362.1 1207349 1208437 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1207349..1208437) Lactobacillus johnsonii NCC 533 2743546 NP_965133.1 CDS pyrC NC_005362.1 1208434 1209711 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1208434..1209711) Lactobacillus johnsonii NCC 533 2743536 NP_965134.1 CDS pyrB NC_005362.1 1209711 1210667 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(1209711..1210667) Lactobacillus johnsonii NCC 533 2741913 NP_965135.1 CDS LJ1280 NC_005362.1 1210815 1211381 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase complement(1210815..1211381) Lactobacillus johnsonii NCC 533 2742602 NP_965136.1 CDS LJ1281 NC_005362.1 1211524 1212447 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1211524..1212447) Lactobacillus johnsonii NCC 533 2741886 NP_965137.1 CDS LJ1282 NC_005362.1 1212697 1213404 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1212697..1213404 Lactobacillus johnsonii NCC 533 2742202 NP_965138.1 CDS pyrE NC_005362.1 1213406 1214044 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1213406..1214044 Lactobacillus johnsonii NCC 533 2742606 NP_965139.1 CDS LJ1284 NC_005362.1 1214341 1215936 D hypothetical protein 1214341..1215936 Lactobacillus johnsonii NCC 533 2742633 NP_965140.1 CDS LJ1285 NC_005362.1 1215986 1216798 R contains haloacid dehalogenase-like hydrolase domain; hypothetical protein complement(1215986..1216798) Lactobacillus johnsonii NCC 533 2742546 NP_965141.1 CDS LJ1286 NC_005362.1 1216795 1217835 R contains DUF218 domain; hypothetical protein complement(1216795..1217835) Lactobacillus johnsonii NCC 533 2742554 NP_965142.1 CDS LJ1287 NC_005362.1 1217963 1218289 D contains DUF74 domain; hypothetical protein 1217963..1218289 Lactobacillus johnsonii NCC 533 2742548 NP_965143.1 CDS LJ1288 NC_005362.1 1218320 1219711 R contains NOL1/NOP2/sun domain; hypothetical protein complement(1218320..1219711) Lactobacillus johnsonii NCC 533 2742613 NP_965144.1 CDS LJ1289 NC_005362.1 1219711 1220688 R hypothetical protein complement(1219711..1220688) Lactobacillus johnsonii NCC 533 2742141 NP_965145.1 CDS LJ1290 NC_005362.1 1220688 1221416 R hypothetical protein complement(1220688..1221416) Lactobacillus johnsonii NCC 533 2742161 NP_965146.1 CDS LJ1291 NC_005362.1 1221506 1222075 D signal peptidase I 1221506..1222075 Lactobacillus johnsonii NCC 533 2742195 NP_965147.1 CDS LJ1292 NC_005362.1 1222381 1222875 D hypothetical protein 1222381..1222875 Lactobacillus johnsonii NCC 533 2742145 NP_965148.1 CDS LJ1293 NC_005362.1 1222872 1223120 D hypothetical protein 1222872..1223120 Lactobacillus johnsonii NCC 533 2741953 NP_965149.1 CDS LJ1294 NC_005362.1 1223240 1223611 R hypothetical protein complement(1223240..1223611) Lactobacillus johnsonii NCC 533 2742179 NP_965150.1 CDS LJ1295 NC_005362.1 1223581 1223952 R hypothetical protein complement(1223581..1223952) Lactobacillus johnsonii NCC 533 2741928 NP_965151.1 CDS LJ1296 NC_005362.1 1223930 1225549 R ABC transporter ATPase and permease components complement(1223930..1225549) Lactobacillus johnsonii NCC 533 2742527 NP_965152.1 CDS LJ1297 NC_005362.1 1225918 1226733 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(1225918..1226733) Lactobacillus johnsonii NCC 533 2741955 NP_965153.1 CDS LJ1298 NC_005362.1 1227014 1227241 D putative transposase 1227014..1227241 Lactobacillus johnsonii NCC 533 2742251 NP_965154.1 CDS LJ1299 NC_005362.1 1227296 1228132 R hypothetical protein complement(1227296..1228132) Lactobacillus johnsonii NCC 533 2742974 NP_965155.1 CDS LJ1300 NC_005362.1 1228139 1228954 R hypothetical protein complement(1228139..1228954) Lactobacillus johnsonii NCC 533 2742520 NP_965156.1 CDS LJ1301 NC_005362.1 1228957 1229664 R ABC transporter ATPase component complement(1228957..1229664) Lactobacillus johnsonii NCC 533 2743375 NP_965157.1 CDS LJ1302 NC_005362.1 1229666 1230034 R contains bacterial regulatory gntR domain; hypothetical protein complement(1229666..1230034) Lactobacillus johnsonii NCC 533 2743055 NP_965158.1 CDS LJ1303 NC_005362.1 1230345 1231592 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(1230345..1231592) Lactobacillus johnsonii NCC 533 2742392 NP_965159.1 CDS LJ1304 NC_005362.1 1231604 1232401 R contains DUF34 domain; hypothetical protein complement(1231604..1232401) Lactobacillus johnsonii NCC 533 2743756 NP_965160.1 CDS LJ1305 NC_005362.1 1232398 1233111 R hypothetical protein complement(1232398..1233111) Lactobacillus johnsonii NCC 533 2743226 NP_965161.1 CDS LJ1306 NC_005362.1 1233280 1234557 D transposase 1233280..1234557 Lactobacillus johnsonii NCC 533 2742021 NP_965162.1 CDS LJ1307 NC_005362.1 1234673 1235527 R ABC transporter solute-binding component complement(1234673..1235527) Lactobacillus johnsonii NCC 533 2741973 NP_965163.1 CDS LJ1309 NC_005362.1 1235540 1236280 R ABC transporter ATPase component complement(1235540..1236280) Lactobacillus johnsonii NCC 533 2742002 NP_965164.1 CDS LJ1310 NC_005362.1 1236284 1236961 R ABC transporter permease component complement(1236284..1236961) Lactobacillus johnsonii NCC 533 2741977 NP_965165.1 CDS LJ1311 NC_005362.1 1236942 1237601 R ABC transporter permease component complement(1236942..1237601) Lactobacillus johnsonii NCC 533 2741965 NP_965166.1 CDS LJ1312 NC_005362.1 1237816 1238673 R hypothetical protein complement(1237816..1238673) Lactobacillus johnsonii NCC 533 2741918 NP_965167.1 CDS LJ1313 NC_005362.1 1238782 1240311 R hypothetical protein complement(1238782..1240311) Lactobacillus johnsonii NCC 533 2741956 NP_965168.1 CDS LJ1314 NC_005362.1 1240392 1240997 R hypothetical protein complement(1240392..1240997) Lactobacillus johnsonii NCC 533 2742564 NP_965169.1 CDS LJ1315 NC_005362.1 1241016 1241528 R hypothetical protein complement(1241016..1241528) Lactobacillus johnsonii NCC 533 2741992 NP_965170.1 CDS LJ1316 NC_005362.1 1241541 1242428 R hypothetical protein complement(1241541..1242428) Lactobacillus johnsonii NCC 533 2742253 NP_965171.1 CDS LJ1317 NC_005362.1 1242786 1243904 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1242786..1243904) Lactobacillus johnsonii NCC 533 2742237 NP_965172.1 CDS LJ1318 NC_005362.1 1243920 1245731 R DNA primase complement(1243920..1245731) Lactobacillus johnsonii NCC 533 2742522 NP_965173.1 CDS glyS NC_005362.1 1245755 1247827 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(1245755..1247827) Lactobacillus johnsonii NCC 533 2742529 NP_965174.1 CDS glyQ NC_005362.1 1247820 1248737 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1247820..1248737) Lactobacillus johnsonii NCC 533 2742214 NP_965175.1 CDS LJ1321 NC_005362.1 1249032 1249784 R DNA repair protein RecO complement(1249032..1249784) Lactobacillus johnsonii NCC 533 2742165 NP_965176.1 CDS era NC_005362.1 1249785 1250696 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1249785..1250696) Lactobacillus johnsonii NCC 533 2742181 NP_965177.1 CDS LJ1323 NC_005362.1 1250721 1251248 R contains UPF0054 domain; hypothetical protein complement(1250721..1251248) Lactobacillus johnsonii NCC 533 2742168 NP_965178.1 CDS LJ1324 NC_005362.1 1251252 1252214 R PHOH-like protein complement(1251252..1252214) Lactobacillus johnsonii NCC 533 2742630 NP_965179.1 CDS LJ1324b NC_005362.1 1252242 1252685 R 30S ribosomal protein S21 complement(1252242..1252685) Lactobacillus johnsonii NCC 533 2742590 NP_965180.1 CDS rpsU NC_005362.1 1252792 1252968 R contains DUF186 domain; a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1252792..1252968) Lactobacillus johnsonii NCC 533 2742601 NP_965181.1 CDS LJ1326 NC_005362.1 1253119 1253961 D hypothetical protein 1253119..1253961 Lactobacillus johnsonii NCC 533 2742582 NP_965182.1 CDS LJ1327 NC_005362.1 1254027 1254347 R contains DUF59 domain; hypothetical protein complement(1254027..1254347) Lactobacillus johnsonii NCC 533 2742593 NP_965183.1 CDS LJ1328 NC_005362.1 1254349 1255230 R L-serine dehydratase alpha subunit complement(1254349..1255230) Lactobacillus johnsonii NCC 533 2742565 NP_965184.1 CDS LJ1329 NC_005362.1 1255243 1255905 R L-serine dehydratase, beta chain complement(1255243..1255905) Lactobacillus johnsonii NCC 533 2742243 NP_965185.1 CDS LJ1330 NC_005362.1 1255994 1256872 R contains DUF161 domain; hypothetical protein complement(1255994..1256872) Lactobacillus johnsonii NCC 533 2742579 NP_965186.1 CDS LJ1331 NC_005362.1 1256938 1257495 R peptide methionine sulfoxide reductase MsrA complement(1256938..1257495) Lactobacillus johnsonii NCC 533 2741882 NP_965187.1 CDS LJ1387b NC_005362.1 1257659 1257850 R hypothetical protein complement(1257659..1257850) Lactobacillus johnsonii NCC 533 2742651 NP_965188.1 CDS LJ1388 NC_005362.1 1258132 1258893 R hypothetical protein complement(1258132..1258893) Lactobacillus johnsonii NCC 533 2742219 NP_965189.1 CDS LJ1389 NC_005362.1 1258898 1259326 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1258898..1259326) Lactobacillus johnsonii NCC 533 2742557 NP_965190.1 CDS LJ1390 NC_005362.1 1259431 1260615 D aspartate aminotransferase 1259431..1260615 Lactobacillus johnsonii NCC 533 2742223 NP_965191.1 CDS aspS NC_005362.1 1260691 1262544 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1260691..1262544) Lactobacillus johnsonii NCC 533 2742940 NP_965192.1 CDS hisS NC_005362.1 1262546 1263832 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1262546..1263832) Lactobacillus johnsonii NCC 533 2742816 NP_965193.1 CDS LJ1393 NC_005362.1 1264115 1264552 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1264115..1264552) Lactobacillus johnsonii NCC 533 2742834 NP_965194.1 CDS LJ1394 NC_005362.1 1264552 1266801 R GTP pyrophosphokinase complement(1264552..1266801) Lactobacillus johnsonii NCC 533 2742938 NP_965195.1 CDS LJ1395 NC_005362.1 1266819 1267199 R hypothetical protein complement(1266819..1267199) Lactobacillus johnsonii NCC 533 2742953 NP_965196.1 CDS prmA NC_005362.1 1267232 1268179 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(1267232..1268179) Lactobacillus johnsonii NCC 533 2742417 NP_965197.1 CDS LJ1397 NC_005362.1 1268242 1268745 D hypothetical protein 1268242..1268745 Lactobacillus johnsonii NCC 533 2742367 NP_965198.1 CDS LJ1398 NC_005362.1 1268868 1270490 R hypothetical protein complement(1268868..1270490) Lactobacillus johnsonii NCC 533 2742402 NP_965199.1 CDS LJ1399 NC_005362.1 1270656 1272347 R hypothetical protein complement(1270656..1272347) Lactobacillus johnsonii NCC 533 2742408 NP_965200.1 CDS LJ1400 NC_005362.1 1272427 1274856 R contains cation-transporting ATPase domain; hypothetical protein complement(1272427..1274856) Lactobacillus johnsonii NCC 533 2742277 NP_965201.1 CDS LJ1401 NC_005362.1 1274873 1275898 R L-asparaginase complement(1274873..1275898) Lactobacillus johnsonii NCC 533 2742274 NP_965202.1 CDS LJ1402 NC_005362.1 1275989 1277371 R hypothetical protein complement(1275989..1277371) Lactobacillus johnsonii NCC 533 2742776 NP_965203.1 CDS ldh NC_005362.1 1277480 1278406 R Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase complement(1277480..1278406) Lactobacillus johnsonii NCC 533 2742261 NP_965204.1 CDS LJ1404 NC_005362.1 1278486 1279859 R fumarate reductase flavoprotein subunit complement(1278486..1279859) Lactobacillus johnsonii NCC 533 2743449 NP_965205.1 CDS fumC NC_005362.1 1279874 1281280 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1279874..1281280) Lactobacillus johnsonii NCC 533 2743538 NP_965206.1 CDS LJ1406 NC_005362.1 1281418 1282119 R ABC transporter permease component complement(1281418..1282119) Lactobacillus johnsonii NCC 533 2743145 NP_965207.1 CDS LJ1407 NC_005362.1 1282112 1283161 R ABC transporter ATPase component complement(1282112..1283161) Lactobacillus johnsonii NCC 533 2743511 NP_965208.1 CDS LJ1408 NC_005362.1 1283178 1284032 R D-methionine-binding lipoprotein MetQ precursor complement(1283178..1284032) Lactobacillus johnsonii NCC 533 2743441 NP_965209.1 CDS LJ1409 NC_005362.1 1284450 1285154 D hypothetical protein 1284450..1285154 Lactobacillus johnsonii NCC 533 2742275 NP_965210.1 CDS LJ1410 NC_005362.1 1285154 1286005 D hypothetical protein 1285154..1286005 Lactobacillus johnsonii NCC 533 2743486 NP_965211.1 CDS LJ1411 NC_005362.1 1286234 1286623 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1286234..1286623 Lactobacillus johnsonii NCC 533 2742400 NP_965212.1 CDS LJ1412 NC_005362.1 1286673 1287653 R conjugated bile salt hydrolase complement(1286673..1287653) Lactobacillus johnsonii NCC 533 2743525 NP_965213.1 CDS LJ1413 NC_005362.1 1287749 1288708 R ABC transporter ATPase component complement(1287749..1288708) Lactobacillus johnsonii NCC 533 2743550 NP_965214.1 CDS LJ1414 NC_005362.1 1288701 1289372 R ABC transporter ATPase component complement(1288701..1289372) Lactobacillus johnsonii NCC 533 2743565 NP_965215.1 CDS LJ1415 NC_005362.1 1289440 1289721 R hypothetical protein complement(1289440..1289721) Lactobacillus johnsonii NCC 533 2743465 NP_965216.1 CDS eno NC_005362.1 1289835 1291121 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1289835..1291121) Lactobacillus johnsonii NCC 533 2743679 NP_965217.1 CDS LJ1417 NC_005362.1 1291299 1291883 R contains PAP2 superfamily domain; hypothetical protein complement(1291299..1291883) Lactobacillus johnsonii NCC 533 2743510 NP_965218.1 CDS LJ1418 NC_005362.1 1292553 1293500 R Lj928 prophage lysin complement(1292553..1293500) Lactobacillus johnsonii NCC 533 2743750 NP_965219.1 CDS LJ1419 NC_005362.1 1293512 1293910 R Lj928 prophage holin complement(1293512..1293910) Lactobacillus johnsonii NCC 533 2742547 NP_965220.1 CDS LJ1420 NC_005362.1 1293910 1294122 R Lj928 prophage protein complement(1293910..1294122) Lactobacillus johnsonii NCC 533 2743564 NP_965221.1 CDS LJ1421 NC_005362.1 1294097 1294318 R Lj928 prophage protein complement(1294097..1294318) Lactobacillus johnsonii NCC 533 2743240 NP_965222.1 CDS LJ1422 NC_005362.1 1294386 1294787 R Lj928 prophage protein complement(1294386..1294787) Lactobacillus johnsonii NCC 533 2742914 NP_965223.1 CDS LJ1423 NC_005362.1 1294789 1297467 R Lj928 prophage protein complement(1294789..1297467) Lactobacillus johnsonii NCC 533 2743321 NP_965224.1 CDS LJ1424 NC_005362.1 1297448 1297840 R Lj928 prophage protein complement(1297448..1297840) Lactobacillus johnsonii NCC 533 2743320 NP_965225.1 CDS LJ1425 NC_005362.1 1297833 1300223 R Lj928 prophage protein complement(1297833..1300223) Lactobacillus johnsonii NCC 533 2743296 NP_965226.1 CDS LJ1425c NC_005362.1 1300223 1301032 R Lj928 prophage protein complement(1300223..1301032) Lactobacillus johnsonii NCC 533 2743299 NP_965227.1 CDS LJ1425d NC_005362.1 1301032 1305666 R Lj928 prophage protein complement(1301032..1305666) Lactobacillus johnsonii NCC 533 2743263 NP_965228.1 CDS LJ1426 NC_005362.1 1305666 1306007 R Lj928 prophage protein complement(1305666..1306007) Lactobacillus johnsonii NCC 533 2743249 NP_965229.1 CDS LJ1427 NC_005362.1 1306031 1306411 R Lj928 prophage minor tail protein complement(1306031..1306411) Lactobacillus johnsonii NCC 533 2743295 NP_965230.1 CDS LJ1428 NC_005362.1 1306469 1307038 R Lj928 prophage protein complement(1306469..1307038) Lactobacillus johnsonii NCC 533 2743074 NP_965231.1 CDS LJ1429 NC_005362.1 1307052 1307429 R Lj928 prophage protein complement(1307052..1307429) Lactobacillus johnsonii NCC 533 2743116 NP_965232.1 CDS LJ1430 NC_005362.1 1307499 1307777 R Lj928 prophage major tail protein complement(1307499..1307777) Lactobacillus johnsonii NCC 533 2743184 NP_965233.1 CDS LJ1431 NC_005362.1 1307764 1308042 R Lj928 prophage protein complement(1307764..1308042) Lactobacillus johnsonii NCC 533 2743153 NP_965234.1 CDS LJ1432 NC_005362.1 1308011 1308385 R Lj928 prophage protein complement(1308011..1308385) Lactobacillus johnsonii NCC 533 2743211 NP_965235.1 CDS LJ1433 NC_005362.1 1308443 1309378 R Lj928 prophage protein complement(1308443..1309378) Lactobacillus johnsonii NCC 533 2743165 NP_965236.1 CDS LJ1434 NC_005362.1 1309394 1309960 R Lj928 prophage protein complement(1309394..1309960) Lactobacillus johnsonii NCC 533 2743220 NP_965237.1 CDS LJ1435 NC_005362.1 1310095 1310430 R Lj928 prophage major head protein complement(1310095..1310430) Lactobacillus johnsonii NCC 533 2743120 NP_965238.1 CDS LJ1436 NC_005362.1 1310443 1310676 R Lj928 prophage minor head protein complement(1310443..1310676) Lactobacillus johnsonii NCC 533 2743132 NP_965239.1 CDS LJ1437 NC_005362.1 1310669 1312108 R Lj928 prophage protein complement(1310669..1312108) Lactobacillus johnsonii NCC 533 2742764 NP_965240.1 CDS LJ1438 NC_005362.1 1312092 1313504 R Lj928 prophage protein complement(1312092..1313504) Lactobacillus johnsonii NCC 533 2743599 NP_965241.1 CDS LJ1439 NC_005362.1 1313516 1314784 R Lj928 prophage protein complement(1313516..1314784) Lactobacillus johnsonii NCC 533 2742465 NP_965242.1 CDS LJ1440 NC_005362.1 1314777 1315232 R Lj928 prophage portal protein complement(1314777..1315232) Lactobacillus johnsonii NCC 533 2743469 NP_965243.1 CDS LJ1441 NC_005362.1 1315289 1315945 R Lj928 prophage terminase large subunit complement(1315289..1315945) Lactobacillus johnsonii NCC 533 2742451 NP_965244.1 CDS LJ1442 NC_005362.1 1316127 1316651 R Lj928 prophage terminase small subunit complement(1316127..1316651) Lactobacillus johnsonii NCC 533 2742429 NP_965245.1 CDS LJ1443 NC_005362.1 1317695 1318135 R Lj928 prophage protein complement(1317695..1318135) Lactobacillus johnsonii NCC 533 2742711 NP_965246.1 CDS LJ1444 NC_005362.1 1318224 1318445 R Lj928 prophage protein complement(1318224..1318445) Lactobacillus johnsonii NCC 533 2742756 NP_965247.1 CDS LJ1445 NC_005362.1 1318465 1319019 R Lj928 prophage protein complement(1318465..1319019) Lactobacillus johnsonii NCC 533 2741874 NP_965248.1 CDS LJ1446 NC_005362.1 1319021 1319419 R Lj928 prophage protein complement(1319021..1319419) Lactobacillus johnsonii NCC 533 2741908 NP_965249.1 CDS LJ1447 NC_005362.1 1319420 1319635 R Lj928 prophage protein complement(1319420..1319635) Lactobacillus johnsonii NCC 533 2741895 NP_965250.1 CDS LJ1448 NC_005362.1 1319795 1320685 R Lj928 prophage protein complement(1319795..1320685) Lactobacillus johnsonii NCC 533 2742345 NP_965251.1 CDS LJ1449 NC_005362.1 1320698 1321483 R Lj928 prophage protein complement(1320698..1321483) Lactobacillus johnsonii NCC 533 2742716 NP_965252.1 CDS LJ1450 NC_005362.1 1321485 1322378 R Lj928 prophage replication protein complement(1321485..1322378) Lactobacillus johnsonii NCC 533 2742715 NP_965253.1 CDS LJ1451 NC_005362.1 1322415 1322561 R Lj928 prophage recombination protein complement(1322415..1322561) Lactobacillus johnsonii NCC 533 2742714 NP_965254.1 CDS LJ1452 NC_005362.1 1322575 1322724 R Lj928 prophage protein complement(1322575..1322724) Lactobacillus johnsonii NCC 533 2742316 NP_965255.1 CDS LJ1453 NC_005362.1 1323055 1323270 R Lj928 prophage protein complement(1323055..1323270) Lactobacillus johnsonii NCC 533 2742457 NP_965256.1 CDS LJ1454 NC_005362.1 1323348 1323824 D Lj928 prophage protein 1323348..1323824 Lactobacillus johnsonii NCC 533 2743230 NP_965257.1 CDS LJ1455 NC_005362.1 1323975 1324736 R Lj928 prophage antirepressor complement(1323975..1324736) Lactobacillus johnsonii NCC 533 2742760 NP_965258.1 CDS LJ1456 NC_005362.1 1324764 1324985 R Lj928 prophage Cro-repressor complement(1324764..1324985) Lactobacillus johnsonii NCC 533 2742129 NP_965259.1 CDS LJ1457 NC_005362.1 1325165 1325602 D Lj928 prophage repressor protein 1325165..1325602 Lactobacillus johnsonii NCC 533 2743385 NP_965260.1 CDS LJ1458 NC_005362.1 1325592 1325996 D Lj928 prophage protein 1325592..1325996 Lactobacillus johnsonii NCC 533 2743037 NP_965261.1 CDS LJ1459 NC_005362.1 1326052 1326624 D Lj928 prophage protein 1326052..1326624 Lactobacillus johnsonii NCC 533 2743346 NP_965262.1 CDS LJ1460 NC_005362.1 1326641 1326940 D Lj928 prophage protein 1326641..1326940 Lactobacillus johnsonii NCC 533 2743381 NP_965263.1 CDS LJ1461 NC_005362.1 1326949 1327245 D Lj928 prophage protein 1326949..1327245 Lactobacillus johnsonii NCC 533 2743062 NP_965264.1 CDS LJ1462 NC_005362.1 1327270 1327725 D Lj928 prophage protein 1327270..1327725 Lactobacillus johnsonii NCC 533 2743402 NP_965265.1 CDS LJ1463 NC_005362.1 1327718 1328095 D Lj928 prophage protein 1327718..1328095 Lactobacillus johnsonii NCC 533 2743050 NP_965266.1 CDS LJ1464 NC_005362.1 1328158 1329033 D Lj928 prophage protein 1328158..1329033 Lactobacillus johnsonii NCC 533 2743076 NP_965267.1 CDS LJ1465 NC_005362.1 1329202 1330377 D Lj928 prophage integrase 1329202..1330377 Lactobacillus johnsonii NCC 533 2743387 NP_965268.1 CDS LJ1466 NC_005362.1 1330838 1331686 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(1330838..1331686) Lactobacillus johnsonii NCC 533 2743713 NP_965269.1 CDS LJ1467 NC_005362.1 1331810 1332469 D P-type proton motive membrane ATPase-like protein 1331810..1332469 Lactobacillus johnsonii NCC 533 2743694 NP_965270.1 CDS LJ1468 NC_005362.1 1332561 1333721 D P-type proton motive membrane ATPase-like protein 1332561..1333721 Lactobacillus johnsonii NCC 533 2742390 NP_965271.1 CDS LJ1469 NC_005362.1 1333795 1335138 R major facilitator superfamily permease complement(1333795..1335138) Lactobacillus johnsonii NCC 533 2742456 NP_965272.1 CDS LJ1470 NC_005362.1 1335313 1335816 R dihydrofolate reductase complement(1335313..1335816) Lactobacillus johnsonii NCC 533 2742898 NP_965273.1 CDS thyA NC_005362.1 1335834 1336790 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1335834..1336790) Lactobacillus johnsonii NCC 533 2743407 NP_965274.1 CDS LJ1472 NC_005362.1 1336925 1338412 D cardiolipinsynthetase 1336925..1338412 Lactobacillus johnsonii NCC 533 2743013 NP_965275.1 CDS LJ1473 NC_005362.1 1338461 1339969 R amino acid transporter complement(1338461..1339969) Lactobacillus johnsonii NCC 533 2742929 NP_965276.1 CDS LJ1474 NC_005362.1 1340094 1340621 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1340094..1340621) Lactobacillus johnsonii NCC 533 2742126 NP_965277.1 CDS LJ1475 NC_005362.1 1340756 1343026 R contains recJ exonuclease domain; hypothetical protein complement(1340756..1343026) Lactobacillus johnsonii NCC 533 2742115 NP_965278.1 CDS LJ1476 NC_005362.1 1343125 1343814 R hypothetical protein complement(1343125..1343814) Lactobacillus johnsonii NCC 533 2742051 NP_965279.1 CDS LJ1477 NC_005362.1 1343952 1345790 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1343952..1345790) Lactobacillus johnsonii NCC 533 2743369 NP_965280.1 CDS LJ1478 NC_005362.1 1345934 1347100 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1345934..1347100) Lactobacillus johnsonii NCC 533 2743386 NP_965281.1 CDS dnaK NC_005362.1 1347180 1349054 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1347180..1349054) Lactobacillus johnsonii NCC 533 2742135 NP_965282.1 CDS LJ1480 NC_005362.1 1349072 1349650 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1349072..1349650) Lactobacillus johnsonii NCC 533 2742240 NP_965283.1 CDS hrcA NC_005362.1 1349662 1350720 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(1349662..1350720) Lactobacillus johnsonii NCC 533 2742019 NP_965284.1 CDS LJ1482 NC_005362.1 1351132 1351488 R hypothetical protein complement(1351132..1351488) Lactobacillus johnsonii NCC 533 2742445 NP_965285.1 CDS LJ1483 NC_005362.1 1351504 1353015 R ABC transporter ATPase component complement(1351504..1353015) Lactobacillus johnsonii NCC 533 2742455 NP_965286.1 CDS LJ1484 NC_005362.1 1353274 1354212 R riboflavin kinase/FMN adenylyltransferase complement(1353274..1354212) Lactobacillus johnsonii NCC 533 2741896 NP_965287.1 CDS truB NC_005362.1 1354225 1355118 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1354225..1355118) Lactobacillus johnsonii NCC 533 2742453 NP_965288.1 CDS LJ1486 NC_005362.1 1355164 1355535 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1355164..1355535) Lactobacillus johnsonii NCC 533 2742363 NP_965289.1 CDS infB NC_005362.1 1355566 1358208 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1355566..1358208) Lactobacillus johnsonii NCC 533 2743204 NP_965290.1 CDS LJ1488 NC_005362.1 1358213 1358524 R contains ribosomal protein L7Ae/L30e/S12e/Gadd4 domain; hypothetical protein complement(1358213..1358524) Lactobacillus johnsonii NCC 533 2743595 NP_965291.1 CDS LJ1489 NC_005362.1 1358527 1358823 R hypothetical protein complement(1358527..1358823) Lactobacillus johnsonii NCC 533 2742430 NP_965292.1 CDS nusA NC_005362.1 1358834 1360054 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1358834..1360054) Lactobacillus johnsonii NCC 533 2742182 NP_965293.1 CDS LJ1491 NC_005362.1 1360074 1360550 R contains DUF150 domain; in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1360074..1360550) Lactobacillus johnsonii NCC 533 2742551 NP_965294.1 CDS LJ1492 NC_005362.1 1360658 1364956 R DNA polymerase III alpha subunit complement(1360658..1364956) Lactobacillus johnsonii NCC 533 2742323 NP_965295.1 CDS LJ1493 NC_005362.1 1364962 1366659 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1364962..1366659) Lactobacillus johnsonii NCC 533 2742318 NP_965296.1 CDS LJ1494 NC_005362.1 1366676 1367932 R protease eep complement(1366676..1367932) Lactobacillus johnsonii NCC 533 2741993 NP_965297.1 CDS LJ1495 NC_005362.1 1367945 1368736 R phosphatidate cytidylyltransferase complement(1367945..1368736) Lactobacillus johnsonii NCC 533 2742395 NP_965298.1 CDS LJ1496 NC_005362.1 1368763 1369482 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(1368763..1369482) Lactobacillus johnsonii NCC 533 2742967 NP_965299.1 CDS frr NC_005362.1 1369501 1370058 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1369501..1370058) Lactobacillus johnsonii NCC 533 2742029 NP_965300.1 CDS pyrH NC_005362.1 1370058 1370783 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1370058..1370783) Lactobacillus johnsonii NCC 533 2743170 NP_965301.1 CDS tsf NC_005362.1 1370893 1371918 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1370893..1371918) Lactobacillus johnsonii NCC 533 2743271 NP_965302.1 CDS rpsB NC_005362.1 1371956 1372741 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1371956..1372741) Lactobacillus johnsonii NCC 533 2742070 NP_965303.1 CDS LJ1501 NC_005362.1 1372895 1373917 R contains SAM-dependent methyltransferase domain; hypothetical protein complement(1372895..1373917) Lactobacillus johnsonii NCC 533 2743743 NP_965304.1 CDS LJ1502 NC_005362.1 1373986 1374600 D contains acyltransferase domain; hypothetical protein 1373986..1374600 Lactobacillus johnsonii NCC 533 2743171 NP_965305.1 CDS LJ1503 NC_005362.1 1374668 1375849 D contains cyclopropane-fatty-acyl-phospholipid domain; hypothetical protein 1374668..1375849 Lactobacillus johnsonii NCC 533 2743110 NP_965306.1 CDS LJ1504 NC_005362.1 1375893 1377575 R ABC transporter ATPase and permease components complement(1375893..1377575) Lactobacillus johnsonii NCC 533 2742986 NP_965307.1 CDS LJ1505 NC_005362.1 1377672 1379441 R ABC transporter ATPase and permease components complement(1377672..1379441) Lactobacillus johnsonii NCC 533 2742294 NP_965308.1 CDS LJ1506 NC_005362.1 1379518 1379739 R hypothetical protein complement(1379518..1379739) Lactobacillus johnsonii NCC 533 2743705 NP_965309.1 CDS LJ1507 NC_005362.1 1379812 1380060 R hypothetical protein complement(1379812..1380060) Lactobacillus johnsonii NCC 533 2743112 NP_965310.1 CDS LJ1508 NC_005362.1 1380198 1380821 D Represses a number of genes involved in the response to DNA damage; LexA repressor 1380198..1380821 Lactobacillus johnsonii NCC 533 2743287 NP_965311.1 CDS LJ1509 NC_005362.1 1380858 1381496 R contains uracil-DNA glycosylase domain; hypothetical protein complement(1380858..1381496) Lactobacillus johnsonii NCC 533 2742531 NP_965312.1 CDS LJ1510 NC_005362.1 1381480 1381899 R contains MutT-like domain; hypothetical protein complement(1381480..1381899) Lactobacillus johnsonii NCC 533 2742134 NP_965313.1 CDS LJ1511 NC_005362.1 1382095 1382736 D signal peptidase I 1382095..1382736 Lactobacillus johnsonii NCC 533 2741869 NP_965314.1 CDS rplS NC_005362.1 1382830 1383180 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1382830..1383180) Lactobacillus johnsonii NCC 533 2742265 NP_965315.1 CDS trmD NC_005362.1 1383294 1384016 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1383294..1384016) Lactobacillus johnsonii NCC 533 2743748 NP_965316.1 CDS rimM NC_005362.1 1384006 1384527 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1384006..1384527) Lactobacillus johnsonii NCC 533 2743745 NP_965317.1 CDS rpsP NC_005362.1 1384596 1384868 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1384596..1384868) Lactobacillus johnsonii NCC 533 2742288 NP_965318.1 CDS LJ1516 NC_005362.1 1384955 1386385 R signal recognition particle protein complement(1384955..1386385) Lactobacillus johnsonii NCC 533 2743498 NP_965319.1 CDS LJ1517 NC_005362.1 1386387 1386728 R contains uncharacterized BCR domain; hypothetical protein complement(1386387..1386728) Lactobacillus johnsonii NCC 533 2742978 NP_965320.1 CDS LJ1518 NC_005362.1 1386872 1388296 R dipeptidase complement(1386872..1388296) Lactobacillus johnsonii NCC 533 2743101 NP_965321.1 CDS LJ1519 NC_005362.1 1388336 1389667 R signal recognition particle receptor FtsY complement(1388336..1389667) Lactobacillus johnsonii NCC 533 2742532 NP_965322.1 CDS LJ1520 NC_005362.1 1389670 1393230 R chromosome partitioning protein Smc complement(1389670..1393230) Lactobacillus johnsonii NCC 533 2743764 NP_965323.1 CDS rnc NC_005362.1 1393245 1393925 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1393245..1393925) Lactobacillus johnsonii NCC 533 2743657 NP_965324.1 CDS LJ1522 NC_005362.1 1394033 1395793 R oligopeptide ABC transporter solute-binding component complement(1394033..1395793) Lactobacillus johnsonii NCC 533 2743738 NP_965325.1 CDS LJ1523 NC_005362.1 1395921 1397675 R oligopeptide ABC transporter solute-binding component complement(1395921..1397675) Lactobacillus johnsonii NCC 533 2742610 NP_965326.1 CDS LJ1524 NC_005362.1 1397968 1398882 R oligopeptide ABC transporter permease component complement(1397968..1398882) Lactobacillus johnsonii NCC 533 2742669 NP_965327.1 CDS LJ1525 NC_005362.1 1398899 1399861 R oligopeptide ABC transporter permease component complement(1398899..1399861) Lactobacillus johnsonii NCC 533 2742242 NP_965328.1 CDS LJ1526 NC_005362.1 1399864 1400832 R oligopeptide ABC transporter ATPase component complement(1399864..1400832) Lactobacillus johnsonii NCC 533 2743592 NP_965329.1 CDS LJ1527 NC_005362.1 1400839 1401849 R oligopeptide ABC transporter ATPase component complement(1400839..1401849) Lactobacillus johnsonii NCC 533 2742796 NP_965330.1 CDS acpP NC_005362.1 1402007 1402249 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1402007..1402249) Lactobacillus johnsonii NCC 533 2742875 NP_965331.1 CDS LJ1529 NC_005362.1 1402304 1403305 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(1402304..1403305) Lactobacillus johnsonii NCC 533 2742488 NP_965332.1 CDS LJ1530 NC_005362.1 1403323 1405362 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1403323..1405362) Lactobacillus johnsonii NCC 533 2743048 NP_965333.1 CDS LJ1531 NC_005362.1 1405366 1407030 R contains DAK2 domain; hypothetical protein complement(1405366..1407030) Lactobacillus johnsonii NCC 533 2742980 NP_965334.1 CDS LJ1532 NC_005362.1 1407052 1407414 R contains uncharacterized BCR domain; hypothetical protein complement(1407052..1407414) Lactobacillus johnsonii NCC 533 2742149 NP_965335.1 CDS rpmB NC_005362.1 1407585 1407770 D required for 70S ribosome assembly; 50S ribosomal protein L28 1407585..1407770 Lactobacillus johnsonii NCC 533 2742008 NP_965336.1 CDS LJ1534 NC_005362.1 1407818 1408486 R contains predicted nucleotide-binding domain; hypothetical protein complement(1407818..1408486) Lactobacillus johnsonii NCC 533 2741901 NP_965337.1 CDS LJ1535 NC_005362.1 1408483 1409133 R ribulose-phosphate 3-epimerase complement(1408483..1409133) Lactobacillus johnsonii NCC 533 2743664 NP_965338.1 CDS LJ1536 NC_005362.1 1409142 1410035 R contains predicted GTPase domain; hypothetical protein complement(1409142..1410035) Lactobacillus johnsonii NCC 533 2743105 NP_965339.1 CDS LJ1537 NC_005362.1 1410035 1412023 R contains protein kinase domain; hypothetical protein complement(1410035..1412023) Lactobacillus johnsonii NCC 533 2743054 NP_965340.1 CDS LJ1538 NC_005362.1 1412026 1412778 R contains protein phosphatase 2C domain; hypothetical protein complement(1412026..1412778) Lactobacillus johnsonii NCC 533 2743611 NP_965341.1 CDS LJ1539 NC_005362.1 1412785 1414101 R SUN protein complement(1412785..1414101) Lactobacillus johnsonii NCC 533 2743420 NP_965342.1 CDS LJ1540 NC_005362.1 1414094 1415038 R methionyl-tRNA formyltransferase complement(1414094..1415038) Lactobacillus johnsonii NCC 533 2743392 NP_965343.1 CDS LJ1541 NC_005362.1 1415060 1417456 R primosomal protein N' complement(1415060..1417456) Lactobacillus johnsonii NCC 533 2742452 NP_965344.1 CDS LJ1542 NC_005362.1 1417511 1417729 R DNA-directed RNA polymerase omega subunit complement(1417511..1417729) Lactobacillus johnsonii NCC 533 2743138 NP_965345.1 CDS gmk NC_005362.1 1417733 1418347 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1417733..1418347) Lactobacillus johnsonii NCC 533 2743758 NP_965346.1 CDS LJ1544 NC_005362.1 1418508 1418801 D hypothetical protein 1418508..1418801 Lactobacillus johnsonii NCC 533 2742922 NP_965347.1 CDS LJ1545 NC_005362.1 1418861 1420540 R DNA repair protein RecN complement(1418861..1420540) Lactobacillus johnsonii NCC 533 2742918 NP_965348.1 CDS LJ1546 NC_005362.1 1420551 1421363 R hemolysin-like protein complement(1420551..1421363) Lactobacillus johnsonii NCC 533 2742663 NP_965349.1 CDS LJ1547 NC_005362.1 1421367 1422233 R farnesyl-diphosphate synthase; geranyltranstransferase complement(1421367..1422233) Lactobacillus johnsonii NCC 533 2742903 NP_965350.1 CDS LJ1548 NC_005362.1 1422234 1422479 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1422234..1422479) Lactobacillus johnsonii NCC 533 2743224 NP_965351.1 CDS xseA NC_005362.1 1422460 1423830 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1422460..1423830) Lactobacillus johnsonii NCC 533 2742643 NP_965352.1 CDS LJ1550 NC_005362.1 1423820 1424668 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1423820..1424668) Lactobacillus johnsonii NCC 533 2742981 NP_965353.1 CDS LJ1551 NC_005362.1 1424715 1425116 R contains NusB domain; hypothetical protein complement(1424715..1425116) Lactobacillus johnsonii NCC 533 2743285 NP_965354.1 CDS LJ1552 NC_005362.1 1425117 1425557 R contains uncharacterized BCR domain; hypothetical protein complement(1425117..1425557) Lactobacillus johnsonii NCC 533 2743305 NP_965355.1 CDS LJ1553 NC_005362.1 1425575 1426144 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1425575..1426144) Lactobacillus johnsonii NCC 533 2743316 NP_965356.1 CDS LJ1554 NC_005362.1 1426229 1427338 R Xaa-Pro aminopeptidase complement(1426229..1427338) Lactobacillus johnsonii NCC 533 2743515 NP_965357.1 CDS rpmA NC_005362.1 1427411 1427710 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1427411..1427710) Lactobacillus johnsonii NCC 533 2742180 NP_965358.1 CDS rplU NC_005362.1 1427730 1428041 R 50S ribosomal protein L21 complement(1427730..1428041) Lactobacillus johnsonii NCC 533 2742654 NP_965359.1 CDS LJ1556b NC_005362.1 1428255 1428611 D contains arsenate reductase ArsG and related proteins, glutaredoxin family domain; hypothetical protein 1428255..1428611 Lactobacillus johnsonii NCC 533 2743642 NP_965360.1 CDS LJ1557 NC_005362.1 1428606 1429445 R contains DUF161 domain; hypothetical protein complement(1428606..1429445) Lactobacillus johnsonii NCC 533 2743562 NP_965361.1 CDS LJ1558 NC_005362.1 1429523 1430221 R hypothetical protein complement(1429523..1430221) Lactobacillus johnsonii NCC 533 2743588 NP_965362.1 CDS LJ1559 NC_005362.1 1430199 1430843 R hypothetical protein complement(1430199..1430843) Lactobacillus johnsonii NCC 533 2743714 NP_965363.1 CDS LJ1560 NC_005362.1 1431135 1431536 R hypothetical protein complement(1431135..1431536) Lactobacillus johnsonii NCC 533 2742462 NP_965364.1 CDS LJ1560b NC_005362.1 1431540 1431719 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(1431540..1431719) Lactobacillus johnsonii NCC 533 2742376 NP_965365.1 CDS LJ1561 NC_005362.1 1431772 1432329 R hypothetical protein complement(1431772..1432329) Lactobacillus johnsonii NCC 533 2743568 NP_965366.1 CDS LJ1562 NC_005362.1 1432333 1433166 R contains pyridoxal/pyridoxine/pyridoxamine kinase domain; hypothetical protein complement(1432333..1433166) Lactobacillus johnsonii NCC 533 2742973 NP_965367.1 CDS LJ1563 NC_005362.1 1433163 1433624 R hypothetical protein complement(1433163..1433624) Lactobacillus johnsonii NCC 533 2742188 NP_965368.1 CDS LJ1564 NC_005362.1 1433645 1434298 R hypothetical protein complement(1433645..1434298) Lactobacillus johnsonii NCC 533 2742131 NP_965369.1 CDS LJ1565 NC_005362.1 1434321 1436117 R hypothetical protein complement(1434321..1436117) Lactobacillus johnsonii NCC 533 2742584 NP_965370.1 CDS LJ1566 NC_005362.1 1436315 1437214 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(1436315..1437214) Lactobacillus johnsonii NCC 533 2742315 NP_965371.1 CDS LJ1567 NC_005362.1 1437229 1437621 R contains transcriptional regulator helix-turn-helix domain, AraC family; hypothetical protein complement(1437229..1437621) Lactobacillus johnsonii NCC 533 2743350 NP_965372.1 CDS LJ1568 NC_005362.1 1437764 1438105 R hypothetical protein complement(1437764..1438105) Lactobacillus johnsonii NCC 533 2743463 NP_965373.1 CDS LJ1569 NC_005362.1 1438105 1438833 R contains bacterial regulatory ROK domain; hypothetical protein complement(1438105..1438833) Lactobacillus johnsonii NCC 533 2743744 NP_965374.1 CDS LJ1570 NC_005362.1 1439198 1439677 R hypothetical protein complement(1439198..1439677) Lactobacillus johnsonii NCC 533 2743646 NP_965375.1 CDS LJ1571 NC_005362.1 1440688 1441077 D hypothetical protein 1440688..1441077 Lactobacillus johnsonii NCC 533 2742475 NP_965376.1 CDS LJ1572 NC_005362.1 1441258 1442574 R aminopeptidase C complement(1441258..1442574) Lactobacillus johnsonii NCC 533 2743752 NP_965377.1 CDS LJ1573 NC_005362.1 1442734 1443099 R hypothetical protein complement(1442734..1443099) Lactobacillus johnsonii NCC 533 2743704 NP_965378.1 CDS LJ1574 NC_005362.1 1443781 1445535 D ABC transporter solute-binding component 1443781..1445535 Lactobacillus johnsonii NCC 533 2742658 NP_965379.1 CDS LJ1575 NC_005362.1 1445622 1446059 R contains bacterial regulatory merR domain; hypothetical protein complement(1445622..1446059) Lactobacillus johnsonii NCC 533 2743167 NP_965380.1 CDS LJ1576 NC_005362.1 1446236 1447708 D major facilitator superfamily permease 1446236..1447708 Lactobacillus johnsonii NCC 533 2743197 NP_965381.1 CDS LJ1577 NC_005362.1 1447708 1448268 D hypothetical protein 1447708..1448268 Lactobacillus johnsonii NCC 533 2742580 NP_965382.1 CDS LJ1578 NC_005362.1 1448318 1449106 R hypothetical protein complement(1448318..1449106) Lactobacillus johnsonii NCC 533 2743302 NP_965383.1 CDS LJ1579 NC_005362.1 1449391 1449978 R contains fic protein domain; hypothetical protein complement(1449391..1449978) Lactobacillus johnsonii NCC 533 2742133 NP_965384.1 CDS LJ1580 NC_005362.1 1449971 1450390 R hypothetical protein complement(1449971..1450390) Lactobacillus johnsonii NCC 533 2743260 NP_965385.1 CDS LJ1581 NC_005362.1 1450536 1452347 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1450536..1452347) Lactobacillus johnsonii NCC 533 2743139 NP_965386.1 CDS LJ1582 NC_005362.1 1452614 1454230 R ABC transporter ATPase and permease components complement(1452614..1454230) Lactobacillus johnsonii NCC 533 2742688 NP_965387.1 CDS LJ1583 NC_005362.1 1454906 1455676 R contains haloacid dehalogenase-like hydrolase domain; hypothetical protein complement(1454906..1455676) Lactobacillus johnsonii NCC 533 2741900 NP_965388.1 CDS LJ1584 NC_005362.1 1455763 1458297 R aminopeptidase N complement(1455763..1458297) Lactobacillus johnsonii NCC 533 2741870 NP_965389.1 CDS LJ1585 NC_005362.1 1458495 1460879 D catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 1458495..1460879 Lactobacillus johnsonii NCC 533 2743255 NP_965390.1 CDS LJ1586 NC_005362.1 1461048 1462289 R two-component system histidine kinase complement(1461048..1462289) Lactobacillus johnsonii NCC 533 2743362 NP_965391.1 CDS LJ1587 NC_005362.1 1462333 1462998 R two-component system response regulator complement(1462333..1462998) Lactobacillus johnsonii NCC 533 2743644 NP_965392.1 CDS LJ1588 NC_005362.1 1463003 1463614 R hypothetical protein complement(1463003..1463614) Lactobacillus johnsonii NCC 533 2743512 NP_965393.1 CDS LJ1589 NC_005362.1 1463682 1464614 R hypothetical protein complement(1463682..1464614) Lactobacillus johnsonii NCC 533 2742467 NP_965394.1 CDS LJ1590 NC_005362.1 1464876 1465286 R hypothetical protein complement(1464876..1465286) Lactobacillus johnsonii NCC 533 2742091 NP_965395.1 CDS LJ1591 NC_005362.1 1465299 1466846 R possible glycine betaine/carnitine/choline; ABC transporter permease component complement(1465299..1466846) Lactobacillus johnsonii NCC 533 2743446 NP_965396.1 CDS LJ1592 NC_005362.1 1466839 1467801 R possible glycine betaine/carnitine/choline; ABC transporter ATPase component complement(1466839..1467801) Lactobacillus johnsonii NCC 533 2742448 NP_965397.1 CDS LJ1593 NC_005362.1 1467932 1468837 R UTP--glucose-1-phosphate uridylyltransferase complement(1467932..1468837) Lactobacillus johnsonii NCC 533 2742628 NP_965398.1 CDS LJ1594 NC_005362.1 1468911 1469819 R contains tRNA-processing ribonuclease BN domain; hypothetical protein complement(1468911..1469819) Lactobacillus johnsonii NCC 533 2743677 NP_965399.1 CDS LJ1595 NC_005362.1 1469834 1470658 R methionine aminopeptidase complement(1469834..1470658) Lactobacillus johnsonii NCC 533 2743633 NP_965400.1 CDS LJ1596 NC_005362.1 1470844 1471290 D contains flavodoxin domain; hypothetical protein 1470844..1471290 Lactobacillus johnsonii NCC 533 2743053 NP_965401.1 CDS LJ1597 NC_005362.1 1471283 1471792 D hypothetical protein 1471283..1471792 Lactobacillus johnsonii NCC 533 2743372 NP_965402.1 CDS LJ1598 NC_005362.1 1471825 1472967 R putative UDP-N-acetylglucosamine 2-epimerase complement(1471825..1472967) Lactobacillus johnsonii NCC 533 2742758 NP_965403.1 CDS LJ1599 NC_005362.1 1473424 1474701 D transposase 1473424..1474701 Lactobacillus johnsonii NCC 533 2743007 NP_965404.1 CDS prfC NC_005362.1 1474757 1476325 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(1474757..1476325) Lactobacillus johnsonii NCC 533 2743080 NP_965405.1 CDS LJ1601 NC_005362.1 1476325 1477191 R contains CBS domain; hypothetical protein complement(1476325..1477191) Lactobacillus johnsonii NCC 533 2742987 NP_965406.1 CDS LJ1602 NC_005362.1 1477307 1477768 D hypothetical protein 1477307..1477768 Lactobacillus johnsonii NCC 533 2742806 NP_965407.1 CDS LJ1603 NC_005362.1 1477769 1478266 R hypothetical protein complement(1477769..1478266) Lactobacillus johnsonii NCC 533 2743570 NP_965408.1 CDS LJ1604 NC_005362.1 1478238 1478828 R hypothetical protein complement(1478238..1478828) Lactobacillus johnsonii NCC 533 2742730 NP_965409.1 CDS recX NC_005362.1 1478865 1479680 R contains recX domain; binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1478865..1479680) Lactobacillus johnsonii NCC 533 2742198 NP_965410.1 CDS LJ1606 NC_005362.1 1479809 1481188 D contains TRAM domain; hypothetical protein 1479809..1481188 Lactobacillus johnsonii NCC 533 2743228 NP_965411.1 CDS LJ1607 NC_005362.1 1481498 1482661 R hydroxymethylglutaryl-CoA synthase complement(1481498..1482661) Lactobacillus johnsonii NCC 533 2742174 NP_965412.1 CDS LJ1608 NC_005362.1 1482663 1483898 R hydroxymethylglutaryl-CoA reductase complement(1482663..1483898) Lactobacillus johnsonii NCC 533 2742117 NP_965413.1 CDS LJ1609 NC_005362.1 1483876 1485042 R acetyl-CoA acetyltransferase complement(1483876..1485042) Lactobacillus johnsonii NCC 533 2742088 NP_965414.1 CDS LJ1610 NC_005362.1 1485166 1486110 R contains alpha/beta hydrolases domain; hypothetical protein complement(1485166..1486110) Lactobacillus johnsonii NCC 533 2742226 NP_965415.1 CDS LJ1611 NC_005362.1 1486185 1486481 D hypothetical protein 1486185..1486481 Lactobacillus johnsonii NCC 533 2742220 NP_965416.1 CDS LJ1612 NC_005362.1 1486530 1487342 R contains predicted hydrolases of the HAD superfamily domain; hypothetical protein complement(1486530..1487342) Lactobacillus johnsonii NCC 533 2742230 NP_965417.1 CDS LJ1613 NC_005362.1 1487356 1488525 R major facilitator superfamily permease complement(1487356..1488525) Lactobacillus johnsonii NCC 533 2742231 NP_965418.1 CDS LJ1614 NC_005362.1 1488633 1489970 R glutamine synthetase complement(1488633..1489970) Lactobacillus johnsonii NCC 533 2743022 NP_965419.1 CDS miaA NC_005362.1 1490175 1491095 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1490175..1491095) Lactobacillus johnsonii NCC 533 2742761 NP_965420.1 CDS LJ1615b NC_005362.1 1491236 1491415 D hypothetical protein 1491236..1491415 Lactobacillus johnsonii NCC 533 2742587 NP_965421.1 CDS LJ1616 NC_005362.1 1491463 1491861 R contains rhodanese-like domain; hypothetical protein complement(1491463..1491861) Lactobacillus johnsonii NCC 533 2743000 NP_965422.1 CDS LJ1617 NC_005362.1 1491897 1492127 R hypothetical protein complement(1491897..1492127) Lactobacillus johnsonii NCC 533 2742577 NP_965423.1 CDS LJ1618 NC_005362.1 1492130 1492816 R contains rhomboid family domain; hypothetical protein complement(1492130..1492816) Lactobacillus johnsonii NCC 533 2742668 NP_965424.1 CDS LJ1619 NC_005362.1 1492832 1493389 R contains 5-formyltetrahydrofolate cyclo-ligase domain; hypothetical protein complement(1492832..1493389) Lactobacillus johnsonii NCC 533 2743168 NP_965425.1 CDS rpmG NC_005362.1 1493444 1493593 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1493444..1493593) Lactobacillus johnsonii NCC 533 2743410 NP_965426.1 CDS LJ1620 NC_005362.1 1493666 1495765 R penicillin-binding protein 2B complement(1493666..1495765) Lactobacillus johnsonii NCC 533 2743686 NP_965427.1 CDS LJ1621 NC_005362.1 1495881 1498457 D hypothetical protein 1495881..1498457 Lactobacillus johnsonii NCC 533 2742972 NP_965428.1 CDS LJ1622 NC_005362.1 1498508 1498990 R transcription elongation factor GreA complement(1498508..1498990) Lactobacillus johnsonii NCC 533 2742872 NP_965429.1 CDS LJ1623 NC_005362.1 1499071 1500165 R contains DUF175 domain; hypothetical protein complement(1499071..1500165) Lactobacillus johnsonii NCC 533 2742881 NP_965430.1 CDS pheT NC_005362.1 1500229 1502643 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1500229..1502643) Lactobacillus johnsonii NCC 533 2742865 NP_965431.1 CDS pheS NC_005362.1 1502643 1503692 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1502643..1503692) Lactobacillus johnsonii NCC 533 2741912 NP_965432.1 CDS LJ1626 NC_005362.1 1503982 1504338 R contains DUF24 domain; hypothetical protein complement(1503982..1504338) Lactobacillus johnsonii NCC 533 2742871 NP_965433.1 CDS LJ1627 NC_005362.1 1504426 1505187 R contains SpoU rRNA methylase domain; hypothetical protein complement(1504426..1505187) Lactobacillus johnsonii NCC 533 2742349 NP_965434.1 CDS LJ1628 NC_005362.1 1505285 1505560 D putative acylphosphatase 1505285..1505560 Lactobacillus johnsonii NCC 533 2742352 NP_965435.1 CDS LJ1629 NC_005362.1 1505624 1506607 D hypothetical protein 1505624..1506607 Lactobacillus johnsonii NCC 533 2742876 NP_965436.1 CDS LJ1630 NC_005362.1 1506647 1508179 R two-component system histidine kinase complement(1506647..1508179) Lactobacillus johnsonii NCC 533 2741920 NP_965437.1 CDS LJ1631 NC_005362.1 1508151 1508879 R two-component regulatory system response regulator complement(1508151..1508879) Lactobacillus johnsonii NCC 533 2742359 NP_965438.1 CDS LJ1632 NC_005362.1 1508966 1509511 R hypothetical protein complement(1508966..1509511) Lactobacillus johnsonii NCC 533 2743208 NP_965439.1 CDS LJ1633 NC_005362.1 1509511 1510668 R contains uncharacterized ACR domain; hypothetical protein complement(1509511..1510668) Lactobacillus johnsonii NCC 533 2743589 NP_965440.1 CDS LJ1634 NC_005362.1 1510679 1511044 R contains DUF143 domain; hypothetical protein complement(1510679..1511044) Lactobacillus johnsonii NCC 533 2743500 NP_965441.1 CDS LJ1635 NC_005362.1 1511049 1511645 R contains HD domain; hypothetical protein complement(1511049..1511645) Lactobacillus johnsonii NCC 533 2742418 NP_965442.1 CDS LJ1636 NC_005362.1 1511638 1512264 R nicotinate-nucleotide adenylyltransferase complement(1511638..1512264) Lactobacillus johnsonii NCC 533 2742559 NP_965443.1 CDS LJ1637 NC_005362.1 1512264 1513373 R contains GTPase of unknown function domain; in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1512264..1513373) Lactobacillus johnsonii NCC 533 2742709 NP_965444.1 CDS LJ1638 NC_005362.1 1513386 1513889 R contains HAD superfamily domain; hypothetical protein complement(1513386..1513889) Lactobacillus johnsonii NCC 533 2742739 NP_965445.1 CDS LJ1639 NC_005362.1 1514051 1515052 D contains adenosine/AMP deaminase domain; catalyzes the formation of inosine from adenosine; adenosine deaminase 1514051..1515052 Lactobacillus johnsonii NCC 533 2743030 NP_965446.1 CDS rplT NC_005362.1 1515100 1515456 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1515100..1515456) Lactobacillus johnsonii NCC 533 2742216 NP_965447.1 CDS rpmI NC_005362.1 1515489 1515689 R 50S ribosomal protein L35 complement(1515489..1515689) Lactobacillus johnsonii NCC 533 2743604 NP_965448.1 CDS infC NC_005362.1 1515708 1516226 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1515708..1516226) Lactobacillus johnsonii NCC 533 2743749 NP_965449.1 CDS LJ1642 NC_005362.1 1516441 1517682 R hypothetical protein complement(1516441..1517682) Lactobacillus johnsonii NCC 533 2743742 NP_965450.1 CDS LJ1643 NC_005362.1 1517890 1518321 R hypothetical protein complement(1517890..1518321) Lactobacillus johnsonii NCC 533 2743368 NP_965451.1 CDS LJ1644 NC_005362.1 1518318 1518752 R hypothetical protein complement(1518318..1518752) Lactobacillus johnsonii NCC 533 2743343 NP_965452.1 CDS thrS NC_005362.1 1518923 1520854 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1518923..1520854) Lactobacillus johnsonii NCC 533 2743378 NP_965453.1 CDS LJ1646 NC_005362.1 1521136 1522035 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(1521136..1522035) Lactobacillus johnsonii NCC 533 2742909 NP_965454.1 CDS LJ1647 NC_005362.1 1522050 1523390 R similar to DnaB; hypothetical protein complement(1522050..1523390) Lactobacillus johnsonii NCC 533 2742533 NP_965455.1 CDS nrdR NC_005362.1 1523398 1523862 R contains DUF193 domain; transcriptional regulator NrdR complement(1523398..1523862) Lactobacillus johnsonii NCC 533 2743331 NP_965456.1 CDS coaE NC_005362.1 1523867 1524463 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1523867..1524463) Lactobacillus johnsonii NCC 533 2742093 NP_965457.1 CDS LJ1650 NC_005362.1 1524460 1525290 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(1524460..1525290) Lactobacillus johnsonii NCC 533 2742963 NP_965458.1 CDS LJ1651 NC_005362.1 1525310 1527970 R DNA polymerase I complement(1525310..1527970) Lactobacillus johnsonii NCC 533 2743373 NP_965459.1 CDS LJ1652 NC_005362.1 1528177 1528485 R hypothetical protein complement(1528177..1528485) Lactobacillus johnsonii NCC 533 2742190 NP_965460.1 CDS LJ1653 NC_005362.1 1528511 1529344 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, mannose specific complement(1528511..1529344) Lactobacillus johnsonii NCC 533 2742160 NP_965461.1 CDS LJ1654 NC_005362.1 1529347 1530204 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific complement(1529347..1530204) Lactobacillus johnsonii NCC 533 2742046 NP_965462.1 CDS LJ1655 NC_005362.1 1530242 1530745 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, mannose specific complement(1530242..1530745) Lactobacillus johnsonii NCC 533 2742911 NP_965463.1 CDS LJ1656 NC_005362.1 1530758 1531201 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific complement(1530758..1531201) Lactobacillus johnsonii NCC 533 2743251 NP_965464.1 CDS LJ1657 NC_005362.1 1531395 1532357 D contains periplasmic sugar-binding domain; hypothetical protein 1531395..1532357 Lactobacillus johnsonii NCC 533 2743225 NP_965465.1 CDS LJ1658 NC_005362.1 1532357 1533661 D two-component system histidine kinase 1532357..1533661 Lactobacillus johnsonii NCC 533 2742704 NP_965466.1 CDS LJ1659 NC_005362.1 1533663 1534337 D two-component system response regulator 1533663..1534337 Lactobacillus johnsonii NCC 533 2742745 NP_965467.1 CDS LJ1660 NC_005362.1 1534315 1535595 D contains periplasmic sugar-binding domain; hypothetical protein 1534315..1535595 Lactobacillus johnsonii NCC 533 2742183 NP_965468.1 CDS LJ1661 NC_005362.1 1535709 1536422 D deoxyribose-phosphate aldolase 1535709..1536422 Lactobacillus johnsonii NCC 533 2742155 NP_965469.1 CDS LJ1662 NC_005362.1 1536423 1537136 D contains bacterial regulatory gntR domain; hypothetical protein 1536423..1537136 Lactobacillus johnsonii NCC 533 2742595 NP_965470.1 CDS murC NC_005362.1 1537210 1538523 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1537210..1538523) Lactobacillus johnsonii NCC 533 2742614 NP_965471.1 CDS LJ1664 NC_005362.1 1539182 1539829 R phenylalanyl-tRNA synthetase beta chain complement(1539182..1539829) Lactobacillus johnsonii NCC 533 2742801 NP_965472.1 CDS LJ1665 NC_005362.1 1539854 1540174 R thioredoxin complement(1539854..1540174) Lactobacillus johnsonii NCC 533 2743607 NP_965473.1 CDS LJ1666 NC_005362.1 1540304 1540687 D hypothetical protein 1540304..1540687 Lactobacillus johnsonii NCC 533 2742939 NP_965474.1 CDS trmB NC_005362.1 1540760 1541416 R contains putative methyltransferase domain; tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1540760..1541416) Lactobacillus johnsonii NCC 533 2742184 NP_965475.1 CDS LJ1668 NC_005362.1 1541428 1542639 R hypothetical protein complement(1541428..1542639) Lactobacillus johnsonii NCC 533 2743261 NP_965476.1 CDS LJ1669 NC_005362.1 1542632 1543378 R ABC transporter ATPase component complement(1542632..1543378) Lactobacillus johnsonii NCC 533 2743114 NP_965477.1 CDS LJ1670 NC_005362.1 1543474 1543908 D hit protein 1543474..1543908 Lactobacillus johnsonii NCC 533 2743278 NP_965478.1 CDS LJ1671 NC_005362.1 1543991 1544482 D hypothetical protein 1543991..1544482 Lactobacillus johnsonii NCC 533 2742800 NP_965479.1 CDS LJ1672 NC_005362.1 1544482 1544832 D hypothetical protein 1544482..1544832 Lactobacillus johnsonii NCC 533 2743028 NP_965480.1 CDS prsA NC_005362.1 1544954 1545850 D cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidylprolyl isomerase 1544954..1545850 Lactobacillus johnsonii NCC 533 2742517 NP_965481.1 CDS LJ1674 NC_005362.1 1545908 1546885 R hypothetical protein complement(1545908..1546885) Lactobacillus johnsonii NCC 533 2741991 NP_965482.1 CDS LJ1675 NC_005362.1 1546885 1549323 R contains ATPase involved in DNA repair domain; hypothetical protein complement(1546885..1549323) Lactobacillus johnsonii NCC 533 2742078 NP_965483.1 CDS LJ1676 NC_005362.1 1549304 1550527 R contains DNA repair exonuclease domain; hypothetical protein complement(1549304..1550527) Lactobacillus johnsonii NCC 533 2742073 NP_965484.1 CDS LJ1677 NC_005362.1 1550533 1550886 R hypothetical protein complement(1550533..1550886) Lactobacillus johnsonii NCC 533 2742799 NP_965485.1 CDS LJ1678 NC_005362.1 1550906 1552963 R penicillin-binding protein 1F complement(1550906..1552963) Lactobacillus johnsonii NCC 533 2742484 NP_965486.1 CDS LJ1679 NC_005362.1 1553069 1553917 D contains RNA pseudouridylate synthase domain; hypothetical protein 1553069..1553917 Lactobacillus johnsonii NCC 533 2743176 NP_965487.1 CDS LJ1680 NC_005362.1 1554179 1557883 R contains gram positive anchor domain and similarity to IgA proteases; hypothetical protein complement(1554179..1557883) Lactobacillus johnsonii NCC 533 2743641 NP_965488.1 CDS LJ1681 NC_005362.1 1558828 1559115 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, galactitol specific complement(1558828..1559115) Lactobacillus johnsonii NCC 533 2742880 NP_965489.1 CDS LJ1682 NC_005362.1 1559143 1560492 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, galactitol specific complement(1559143..1560492) Lactobacillus johnsonii NCC 533 2742803 NP_965490.1 CDS LJ1683 NC_005362.1 1560505 1560966 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, galactitol specific complement(1560505..1560966) Lactobacillus johnsonii NCC 533 2743424 NP_965491.1 CDS LJ1684 NC_005362.1 1560956 1561381 R hypothetical protein complement(1560956..1561381) Lactobacillus johnsonii NCC 533 2742498 NP_965492.1 CDS LJ1685 NC_005362.1 1561353 1562852 R hypothetical protein complement(1561353..1562852) Lactobacillus johnsonii NCC 533 2741875 NP_965493.1 CDS LJ1686 NC_005362.1 1563028 1563582 R hypothetical protein complement(1563028..1563582) Lactobacillus johnsonii NCC 533 2742523 NP_965494.1 CDS LJ1687 NC_005362.1 1563606 1564457 R hypothetical protein complement(1563606..1564457) Lactobacillus johnsonii NCC 533 2741887 NP_965495.1 CDS LJ1688 NC_005362.1 1564542 1565327 R contains aminoglycoside phosphotransferase domain; hypothetical protein complement(1564542..1565327) Lactobacillus johnsonii NCC 533 2743267 NP_965496.1 CDS LJ1689 NC_005362.1 1565372 1566403 R contains penicillin binding protein domain; hypothetical protein complement(1565372..1566403) Lactobacillus johnsonii NCC 533 2743262 NP_965497.1 CDS LJ1690 NC_005362.1 1566825 1567055 R hypothetical protein complement(1566825..1567055) Lactobacillus johnsonii NCC 533 2742723 NP_965498.1 CDS LJ1691 NC_005362.1 1567057 1567506 R hypothetical protein complement(1567057..1567506) Lactobacillus johnsonii NCC 533 2742543 NP_965499.1 CDS LJ1692 NC_005362.1 1567493 1567738 R hypothetical protein complement(1567493..1567738) Lactobacillus johnsonii NCC 533 2742172 NP_965500.1 CDS LJ1693 NC_005362.1 1567820 1568464 R contains bacterial regulatory crp domain; hypothetical protein complement(1567820..1568464) Lactobacillus johnsonii NCC 533 2742109 NP_965501.1 CDS LJ1694 NC_005362.1 1568475 1568801 R hypothetical protein complement(1568475..1568801) Lactobacillus johnsonii NCC 533 2743737 NP_965502.1 CDS LJ1695 NC_005362.1 1569019 1569249 R contains heavy-metal-associated domain; hypothetical protein complement(1569019..1569249) Lactobacillus johnsonii NCC 533 2743660 NP_965503.1 CDS LJ1696 NC_005362.1 1569276 1571177 R cation-transporting ATPase complement(1569276..1571177) Lactobacillus johnsonii NCC 533 2743619 NP_965504.1 CDS LJ1697 NC_005362.1 1571401 1571985 R hypothetical protein complement(1571401..1571985) Lactobacillus johnsonii NCC 533 2743464 NP_965505.1 CDS LJ1698 NC_005362.1 1572152 1573504 R contains TRAM domain; hypothetical protein complement(1572152..1573504) Lactobacillus johnsonii NCC 533 2743759 NP_965506.1 CDS LJ1699 NC_005362.1 1573554 1574237 R major facilitator superfamily permease complement(1573554..1574237) Lactobacillus johnsonii NCC 533 2743735 NP_965507.1 CDS LJ1700 NC_005362.1 1574230 1574934 R ABC transporter ATPase component complement(1574230..1574934) Lactobacillus johnsonii NCC 533 2743757 NP_965508.1 CDS LJ1701 NC_005362.1 1575294 1576670 D Na+/H+ antiporter 1575294..1576670 Lactobacillus johnsonii NCC 533 2743751 NP_965509.1 CDS LJ1702 NC_005362.1 1576796 1577641 D contains DUF62 domain; hypothetical protein 1576796..1577641 Lactobacillus johnsonii NCC 533 2743741 NP_965510.1 CDS LJ1703 NC_005362.1 1577662 1578219 D hypothetical protein 1577662..1578219 Lactobacillus johnsonii NCC 533 2742200 NP_965511.1 CDS LJ1704 NC_005362.1 1578241 1579962 D ABC transporter ATPase component 1578241..1579962 Lactobacillus johnsonii NCC 533 2742258 NP_965512.1 CDS LJ1705 NC_005362.1 1579955 1580785 D ABC transporter permease component 1579955..1580785 Lactobacillus johnsonii NCC 533 2742159 NP_965513.1 CDS LJ1706 NC_005362.1 1580848 1581561 D contains UPF0005 domain; hypothetical protein 1580848..1581561 Lactobacillus johnsonii NCC 533 2743177 NP_965514.1 CDS LJ1707 NC_005362.1 1581636 1583660 R contains glycosyl transferase family 8 domain; hypothetical protein complement(1581636..1583660) Lactobacillus johnsonii NCC 533 2743269 NP_965515.1 CDS LJ1708 NC_005362.1 1583660 1585666 R contains glycosyl transferase family 8 domain; hypothetical protein complement(1583660..1585666) Lactobacillus johnsonii NCC 533 2742122 NP_965516.1 CDS LJ1709 NC_005362.1 1585941 1587125 R hypothetical protein complement(1585941..1587125) Lactobacillus johnsonii NCC 533 2742910 NP_965517.1 CDS LJ1710 NC_005362.1 1587298 1587720 R hypothetical protein complement(1587298..1587720) Lactobacillus johnsonii NCC 533 2741975 NP_965518.1 CDS LJ1711 NC_005362.1 1587777 1596896 R contains gram positive anchor domain; hypothetical protein complement(1587777..1596896) Lactobacillus johnsonii NCC 533 2742999 NP_965519.1 CDS LJ1714 NC_005362.1 1597235 1598050 R contains predicted HAD hydrolase domain; hypothetical protein complement(1597235..1598050) Lactobacillus johnsonii NCC 533 2743245 NP_965520.1 CDS LJ1715 NC_005362.1 1598310 1599218 R contains diacylglycerol kinase catalytic domain; similar to YegS from E. coli; putative lipid kinase complement(1598310..1599218) Lactobacillus johnsonii NCC 533 2743363 NP_965521.1 CDS gatB NC_005362.1 1599242 1600672 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1599242..1600672) Lactobacillus johnsonii NCC 533 2742319 NP_965522.1 CDS gatA NC_005362.1 1600676 1602115 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1600676..1602115) Lactobacillus johnsonii NCC 533 2743561 NP_965523.1 CDS LJ1718 NC_005362.1 1602115 1602417 R glutamyl-tRNA(Gln) amidotransferase subunit C complement(1602115..1602417) Lactobacillus johnsonii NCC 533 2742639 NP_965524.1 CDS LJ1719 NC_005362.1 1602428 1603567 R hypothetical protein complement(1602428..1603567) Lactobacillus johnsonii NCC 533 2743364 NP_965525.1 CDS LJ1720 NC_005362.1 1603589 1605595 R NAD-dependent DNA ligase complement(1603589..1605595) Lactobacillus johnsonii NCC 533 2743460 NP_965526.1 CDS LJ1721 NC_005362.1 1605634 1607880 R ATP-dependent DNA helicase PcrA complement(1605634..1607880) Lactobacillus johnsonii NCC 533 2742280 NP_965527.1 CDS LJ1722 NC_005362.1 1607978 1608604 R contains mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain; hypothetical protein complement(1607978..1608604) Lactobacillus johnsonii NCC 533 2743527 NP_965528.1 CDS LJ1723 NC_005362.1 1608606 1609223 R hypothetical protein complement(1608606..1609223) Lactobacillus johnsonii NCC 533 2742286 NP_965529.1 CDS LJ1724 NC_005362.1 1609442 1609900 R hypothetical protein complement(1609442..1609900) Lactobacillus johnsonii NCC 533 2742407 NP_965530.1 CDS LJ1725 NC_005362.1 1609900 1610601 R hypothetical protein complement(1609900..1610601) Lactobacillus johnsonii NCC 533 2742297 NP_965531.1 CDS LJ1726 NC_005362.1 1610727 1611776 D transposase 1610727..1611776 Lactobacillus johnsonii NCC 533 2742222 NP_965532.1 CDS LJ1727 NC_005362.1 1611773 1613242 R contains polysaccharide biosynthesis transport domain; hypothetical protein complement(1611773..1613242) Lactobacillus johnsonii NCC 533 2743128 NP_965533.1 CDS LJ1728 NC_005362.1 1613254 1614402 R contains putative glycosyl/glycerophosphate transferase domain involved in teichoic acid biosynthesis; hypothetical protein complement(1613254..1614402) Lactobacillus johnsonii NCC 533 2742337 NP_965534.1 CDS LJ1729 NC_005362.1 1614627 1615433 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1614627..1615433 Lactobacillus johnsonii NCC 533 2742249 NP_965535.1 CDS LJ1730 NC_005362.1 1615535 1617103 D ABC transporter ATPase and permease components 1615535..1617103 Lactobacillus johnsonii NCC 533 2742442 NP_965536.1 CDS LJ1731 NC_005362.1 1617192 1619885 R cation-transporting ATPase complement(1617192..1619885) Lactobacillus johnsonii NCC 533 2742571 NP_965537.1 CDS LJ1732 NC_005362.1 1620091 1622088 R contains AAA+ class ATPase domain; hypothetical protein complement(1620091..1622088) Lactobacillus johnsonii NCC 533 2742266 NP_965538.1 CDS nadE NC_005362.1 1622113 1622946 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1622113..1622946) Lactobacillus johnsonii NCC 533 2742378 NP_965539.1 CDS LJ1734 NC_005362.1 1622948 1624420 R contains nicotinic acid phosphoribosyltransferase domain; catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1622948..1624420) Lactobacillus johnsonii NCC 533 2742666 NP_965540.1 CDS LJ1735 NC_005362.1 1624530 1626524 R contains glycosyl transferase group 2 domain; hypothetical protein complement(1624530..1626524) Lactobacillus johnsonii NCC 533 2742574 NP_965541.1 CDS LJ1736 NC_005362.1 1626508 1627623 R contains glycosyl transferase group 1 domain; hypothetical protein complement(1626508..1627623) Lactobacillus johnsonii NCC 533 2742649 NP_965542.1 CDS LJ1737 NC_005362.1 1627628 1628368 R teichoic acid biosynthesis protein A complement(1627628..1628368) Lactobacillus johnsonii NCC 533 2742171 NP_965543.1 CDS LJ1738 NC_005362.1 1628512 1628898 D glycerol-3-phosphate cytidylyltransferase 1628512..1628898 Lactobacillus johnsonii NCC 533 2742594 NP_965544.1 CDS LJ1739 NC_005362.1 1628950 1629651 R contains bacterial regulatory gntR domain; hypothetical protein complement(1628950..1629651) Lactobacillus johnsonii NCC 533 2742176 NP_965545.1 CDS LJ1740 NC_005362.1 1629706 1630827 R hypothetical protein complement(1629706..1630827) Lactobacillus johnsonii NCC 533 2742612 NP_965546.1 CDS LJ1741 NC_005362.1 1630920 1631222 D contains rhodanese-related sulfurtransferase domain; hypothetical protein 1630920..1631222 Lactobacillus johnsonii NCC 533 2742585 NP_965547.1 CDS LJ1742 NC_005362.1 1631588 1632496 R L-2-hydroxyisocaproate dehydrogenase complement(1631588..1632496) Lactobacillus johnsonii NCC 533 2742490 NP_965548.1 CDS LJ1743 NC_005362.1 1632581 1632829 R hypothetical protein complement(1632581..1632829) Lactobacillus johnsonii NCC 533 2742951 NP_965549.1 CDS LJ1744 NC_005362.1 1632954 1633274 R hypothetical protein complement(1632954..1633274) Lactobacillus johnsonii NCC 533 2742301 NP_965550.1 CDS LJ1745 NC_005362.1 1633596 1634576 R surface protein, aggregation promoting factor complement(1633596..1634576) Lactobacillus johnsonii NCC 533 2742829 NP_965551.1 CDS LJ1746 NC_005362.1 1634938 1635741 R surface protein, aggregation promoting factor complement(1634938..1635741) Lactobacillus johnsonii NCC 533 2742955 NP_965552.1 CDS LJ1747 NC_005362.1 1635958 1636677 R hypothetical protein complement(1635958..1636677) Lactobacillus johnsonii NCC 533 2742900 NP_965553.1 CDS LJ1747b NC_005362.1 1636821 1637225 D phosphate-starvation-inducible protein PsiE 1636821..1637225 Lactobacillus johnsonii NCC 533 2743522 NP_965554.1 CDS LJ1748 NC_005362.1 1637220 1637741 R contains acetyltransferase (GNAT) domain; hypothetical protein complement(1637220..1637741) Lactobacillus johnsonii NCC 533 2743662 NP_965555.1 CDS LJ1749 NC_005362.1 1637990 1639192 R contains phage integrase domain; hypothetical protein complement(1637990..1639192) Lactobacillus johnsonii NCC 533 2743724 NP_965556.1 CDS LJ1750 NC_005362.1 1639454 1639840 R hypothetical protein complement(1639454..1639840) Lactobacillus johnsonii NCC 533 2742904 NP_965557.1 CDS LJ1751 NC_005362.1 1639830 1640636 R hypothetical protein complement(1639830..1640636) Lactobacillus johnsonii NCC 533 2743046 NP_965558.1 CDS LJ1752 NC_005362.1 1640744 1641538 R contains FtsK/SpoIIIE domain; hypothetical protein complement(1640744..1641538) Lactobacillus johnsonii NCC 533 2742780 NP_965559.1 CDS LJ1753 NC_005362.1 1641528 1642097 R hypothetical protein complement(1641528..1642097) Lactobacillus johnsonii NCC 533 2742932 NP_965560.1 CDS LJ1754 NC_005362.1 1642108 1642554 R hypothetical protein complement(1642108..1642554) Lactobacillus johnsonii NCC 533 2743059 NP_965561.1 CDS LJ1755 NC_005362.1 1642760 1643560 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1642760..1643560 Lactobacillus johnsonii NCC 533 2742977 NP_965562.1 CDS LJ1756 NC_005362.1 1643939 1644796 R reductase complement(1643939..1644796) Lactobacillus johnsonii NCC 533 2743029 NP_965563.1 CDS LJ1757 NC_005362.1 1644878 1646209 R pyridine nucleotide-disulfide oxidoreductase complement(1644878..1646209) Lactobacillus johnsonii NCC 533 2743086 NP_965564.1 CDS LJ1758 NC_005362.1 1646343 1647104 D hypothetical protein 1646343..1647104 Lactobacillus johnsonii NCC 533 2743207 NP_965565.1 CDS LJ1759 NC_005362.1 1647164 1648156 D UDP-glucose 4-epimerase 1647164..1648156 Lactobacillus johnsonii NCC 533 2743049 NP_965566.1 CDS LJ1760 NC_005362.1 1648199 1650421 R contains DEAD/DEAH box helicase domain; hypothetical protein complement(1648199..1650421) Lactobacillus johnsonii NCC 533 2743155 NP_965567.1 CDS LJ1761 NC_005362.1 1650429 1651763 R hypothetical protein complement(1650429..1651763) Lactobacillus johnsonii NCC 533 2743199 NP_965568.1 CDS LJ1762 NC_005362.1 1651767 1653647 R hypothetical protein complement(1651767..1653647) Lactobacillus johnsonii NCC 533 2743256 NP_965569.1 CDS LJ1763 NC_005362.1 1653760 1654008 R hypothetical protein complement(1653760..1654008) Lactobacillus johnsonii NCC 533 2743293 NP_965570.1 CDS LJ1764 NC_005362.1 1653963 1654445 R hypothetical protein complement(1653963..1654445) Lactobacillus johnsonii NCC 533 2743129 NP_965571.1 CDS LJ1765 NC_005362.1 1654662 1655087 D hypothetical protein 1654662..1655087 Lactobacillus johnsonii NCC 533 2741856 NP_965572.1 CDS LJ1766 NC_005362.1 1655304 1657913 R bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(1655304..1657913) Lactobacillus johnsonii NCC 533 2743187 NP_965573.1 CDS LJ1767 NC_005362.1 1658228 1659601 D contains amino acid permease domain; hypothetical protein 1658228..1659601 Lactobacillus johnsonii NCC 533 2743144 NP_965574.1 CDS LJ1768 NC_005362.1 1671938 1673929 R contains alkaline phosphatase superfamily domain; hypothetical protein complement(1671938..1673929) Lactobacillus johnsonii NCC 533 2741861 NP_965575.1 CDS LJ1770 NC_005362.1 1674014 1675030 R hypothetical protein complement(1674014..1675030) Lactobacillus johnsonii NCC 533 2743247 NP_965576.1 CDS LJ1771 NC_005362.1 1675030 1676073 R contains glycosyl transferases group 1 domain; hypothetical protein complement(1675030..1676073) Lactobacillus johnsonii NCC 533 2742719 NP_965577.1 CDS LJ1772 NC_005362.1 1676066 1677232 R contains glycosyl transferases group 1 domain; hypothetical protein complement(1676066..1677232) Lactobacillus johnsonii NCC 533 2742671 NP_965578.1 CDS LJ1773 NC_005362.1 1678542 1678901 D hypothetical protein 1678542..1678901 Lactobacillus johnsonii NCC 533 2742424 NP_965579.1 CDS LJ0676 NC_005362.1 1686282 1687592 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(1686282..1687592) Lactobacillus johnsonii NCC 533 2743476 NP_965580.1 CDS LJ0675 NC_005362.1 1687808 1688362 R contains acetyltransferase (GNAT) domain; hypothetical protein complement(1687808..1688362) Lactobacillus johnsonii NCC 533 2742510 NP_965581.1 CDS LJ0674 NC_005362.1 1688362 1688961 R contains uncharacterized ACR domain; hypothetical protein complement(1688362..1688961) Lactobacillus johnsonii NCC 533 2743497 NP_965582.1 CDS LJ0673 NC_005362.1 1689127 1689933 D contains acetyl esterase domain; hypothetical protein 1689127..1689933 Lactobacillus johnsonii NCC 533 2742338 NP_965583.1 CDS LJ0672 NC_005362.1 1689920 1690762 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1689920..1690762 Lactobacillus johnsonii NCC 533 2742325 NP_965584.1 CDS LJ0671 NC_005362.1 1690865 1692238 D succinate-semialdehyde dehydrogenase 1690865..1692238 Lactobacillus johnsonii NCC 533 2742309 NP_965585.1 CDS LJ0670 NC_005362.1 1692287 1693297 R hypothetical protein complement(1692287..1693297) Lactobacillus johnsonii NCC 533 2741923 NP_965586.1 CDS LJ0669 NC_005362.1 1693372 1694055 R contains uncharacterized ACR domain; hypothetical protein complement(1693372..1694055) Lactobacillus johnsonii NCC 533 2741905 NP_965587.1 CDS LJ0668 NC_005362.1 1694203 1695006 D contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 1694203..1695006 Lactobacillus johnsonii NCC 533 2742603 NP_965588.1 CDS LJ0667 NC_005362.1 1695079 1698735 R hypothetical protein complement(1695079..1698735) Lactobacillus johnsonii NCC 533 2742062 NP_965589.1 CDS LJ0666 NC_005362.1 1698755 1699318 R contains bacterial regulatory protein tetR domain; hypothetical protein complement(1698755..1699318) Lactobacillus johnsonii NCC 533 2741989 NP_965590.1 CDS LJ0665 NC_005362.1 1699445 1700389 R hypothetical protein complement(1699445..1700389) Lactobacillus johnsonii NCC 533 2742003 NP_965591.1 CDS LJ0664 NC_005362.1 1700581 1701504 D contains bacterial regulatory protein ROK domain; hypothetical protein 1700581..1701504 Lactobacillus johnsonii NCC 533 2742102 NP_965592.1 CDS LJ0663 NC_005362.1 1701554 1701994 R contains acetyltransferase (GNAT) domain; hypothetical protein complement(1701554..1701994) Lactobacillus johnsonii NCC 533 2743147 NP_965593.1 CDS LJ0662 NC_005362.1 1701994 1702518 R protease synthase and sporulation negative regulatory protein PAI 1 complement(1701994..1702518) Lactobacillus johnsonii NCC 533 2743093 NP_965594.1 CDS LJ0661 NC_005362.1 1702520 1702978 R contains bacterial regulatory protein marR domain; hypothetical protein complement(1702520..1702978) Lactobacillus johnsonii NCC 533 2743248 NP_965595.1 CDS LJ0660 NC_005362.1 1703129 1703497 D hypothetical protein 1703129..1703497 Lactobacillus johnsonii NCC 533 2743219 NP_965596.1 CDS LJ0659 NC_005362.1 1703563 1704867 R contains bacterial extracellular solute-binding domain; hypothetical protein complement(1703563..1704867) Lactobacillus johnsonii NCC 533 2743146 NP_965597.1 CDS LJ0658 NC_005362.1 1704912 1705913 R contains predicted metal-dependent hydrolase 3 domain; hypothetical protein complement(1704912..1705913) Lactobacillus johnsonii NCC 533 2742379 NP_965598.1 CDS LJ0657 NC_005362.1 1705948 1706214 R hypothetical protein complement(1705948..1706214) Lactobacillus johnsonii NCC 533 2742993 NP_965599.1 CDS LJ0656 NC_005362.1 1706198 1707028 R ABC transporter permease component complement(1706198..1707028) Lactobacillus johnsonii NCC 533 2743405 NP_965600.1 CDS LJ0655 NC_005362.1 1707030 1707893 R ABC transporter permease component complement(1707030..1707893) Lactobacillus johnsonii NCC 533 2742890 NP_965601.1 CDS LJ0654 NC_005362.1 1707893 1708978 R ABC transporter ATPase component complement(1707893..1708978) Lactobacillus johnsonii NCC 533 2743665 NP_965602.1 CDS LJ0653 NC_005362.1 1709286 1710719 R dipeptidase complement(1709286..1710719) Lactobacillus johnsonii NCC 533 2743236 NP_965603.1 CDS LJ0652 NC_005362.1 1710750 1711598 R hypothetical protein complement(1710750..1711598) Lactobacillus johnsonii NCC 533 2743238 NP_965604.1 CDS LJ0651 NC_005362.1 1711736 1712560 D 2,5-diketo-D-gluconate reductase 1711736..1712560 Lactobacillus johnsonii NCC 533 2741849 NP_965605.1 CDS LJ0650 NC_005362.1 1712577 1713701 D contains permease domain; hypothetical protein 1712577..1713701 Lactobacillus johnsonii NCC 533 2742617 NP_965606.1 CDS LJ0649 NC_005362.1 1713728 1714690 R contains exonuclease domain; hypothetical protein complement(1713728..1714690) Lactobacillus johnsonii NCC 533 2742509 NP_965607.1 CDS LJ0648 NC_005362.1 1714704 1715510 R hypothetical protein complement(1714704..1715510) Lactobacillus johnsonii NCC 533 2742156 NP_965608.1 CDS LJ0647 NC_005362.1 1715520 1716155 R hypothetical protein complement(1715520..1716155) Lactobacillus johnsonii NCC 533 2741940 NP_965609.1 CDS LJ0646 NC_005362.1 1716163 1716612 R hypothetical protein complement(1716163..1716612) Lactobacillus johnsonii NCC 533 2742146 NP_965610.1 CDS LJ0645 NC_005362.1 1716619 1717893 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(1716619..1717893) Lactobacillus johnsonii NCC 533 2741919 NP_965611.1 CDS LJ0644 NC_005362.1 1717956 1718492 R hypothetical protein complement(1717956..1718492) Lactobacillus johnsonii NCC 533 2742627 NP_965612.1 CDS LJ0643 NC_005362.1 1718562 1719332 R contains permease domain; hypothetical protein complement(1718562..1719332) Lactobacillus johnsonii NCC 533 2742136 NP_965613.1 CDS LJ0642 NC_005362.1 1719813 1720862 R transposase complement(1719813..1720862) Lactobacillus johnsonii NCC 533 2742605 NP_965614.1 CDS LJ0641 NC_005362.1 1721279 1725970 D contains gram positive anchor domain; hypothetical protein 1721279..1725970 Lactobacillus johnsonii NCC 533 2742607 NP_965615.1 CDS mscL NC_005362.1 1726093 1726467 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 1726093..1726467 Lactobacillus johnsonii NCC 533 2742611 NP_965616.1 CDS LJ0639 NC_005362.1 1726563 1727054 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, glucose specific complement(1726563..1727054) Lactobacillus johnsonii NCC 533 2742696 NP_965617.1 CDS LJ0638 NC_005362.1 1727059 1727568 R hypothetical protein complement(1727059..1727568) Lactobacillus johnsonii NCC 533 2742257 NP_965618.1 CDS LJ0637 NC_005362.1 1727546 1728352 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(1727546..1728352) Lactobacillus johnsonii NCC 533 2742296 NP_965619.1 CDS LJ0636 NC_005362.1 1728441 1730327 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIBC, arbutin specific complement(1728441..1730327) Lactobacillus johnsonii NCC 533 2742291 NP_965620.1 CDS LJ0635 NC_005362.1 1730413 1731756 R 6-phospho-alpha-glucosidase (maltose-6'-phosphate hydrolase) complement(1730413..1731756) Lactobacillus johnsonii NCC 533 2742289 NP_965621.1 CDS LJ0634 NC_005362.1 1732175 1732909 R hypothetical protein complement(1732175..1732909) Lactobacillus johnsonii NCC 533 2742353 NP_965622.1 CDS LJ0633 NC_005362.1 1733320 1734708 D contains sodium/dicarboxylate symporter domain; hypothetical protein 1733320..1734708 Lactobacillus johnsonii NCC 533 2742415 NP_965623.1 CDS LJ0632 NC_005362.1 1735232 1736341 D contains methionine synthase, vitamin-B12 independent domain; hypothetical protein 1735232..1736341 Lactobacillus johnsonii NCC 533 2742290 NP_965624.1 CDS LJ0631 NC_005362.1 1736356 1736832 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1736356..1736832 Lactobacillus johnsonii NCC 533 2743085 NP_965625.1 CDS LJ0630 NC_005362.1 1736894 1737289 R hypothetical protein complement(1736894..1737289) Lactobacillus johnsonii NCC 533 2742755 NP_965626.1 CDS LJ0629 NC_005362.1 1737376 1738179 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, N-acetylgalactosamine specific complement(1737376..1738179) Lactobacillus johnsonii NCC 533 2743594 NP_965627.1 CDS LJ0628 NC_005362.1 1738169 1738978 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, N-acetylgalactosamine specific complement(1738169..1738978) Lactobacillus johnsonii NCC 533 2742947 NP_965628.1 CDS LJ0627 NC_005362.1 1738994 1739914 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, mannose specific complement(1738994..1739914) Lactobacillus johnsonii NCC 533 2743654 NP_965629.1 CDS LJ0626 NC_005362.1 1740199 1741953 R oligopeptide ABC transporter ABC transporter solute-binding component complement(1740199..1741953) Lactobacillus johnsonii NCC 533 2743659 NP_965630.1 CDS LJ0625 NC_005362.1 1742205 1743116 R drug/metabolite transporter superfamily; DMT permease complement(1742205..1743116) Lactobacillus johnsonii NCC 533 2743344 NP_965631.1 CDS LJ0624 NC_005362.1 1743410 1743673 R hypothetical protein complement(1743410..1743673) Lactobacillus johnsonii NCC 533 2742773 NP_965632.1 CDS LJ0623 NC_005362.1 1744077 1744745 R contains transcriptional antiterminator bglG domain; hypothetical protein complement(1744077..1744745) Lactobacillus johnsonii NCC 533 2743333 NP_965633.1 CDS LJ0622 NC_005362.1 1745031 1746080 D transposase 1745031..1746080 Lactobacillus johnsonii NCC 533 2742893 NP_965634.1 CDS LJ0621 NC_005362.1 1746202 1754571 R contains gram positive anchor domain; hypothetical protein complement(1746202..1754571) Lactobacillus johnsonii NCC 533 2743345 NP_965635.1 CDS LJ0620 NC_005362.1 1754879 1755451 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1754879..1755451) Lactobacillus johnsonii NCC 533 2743339 NP_965636.1 CDS LJ0619 NC_005362.1 1755464 1756315 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(1755464..1756315) Lactobacillus johnsonii NCC 533 2743073 NP_965637.1 CDS LJ0618 NC_005362.1 1756405 1756977 D contains lipase/acylhydrolase with GDSL-like motif domain; hypothetical protein 1756405..1756977 Lactobacillus johnsonii NCC 533 2743019 NP_965638.1 CDS LJ0617 NC_005362.1 1757013 1757672 R hypothetical protein complement(1757013..1757672) Lactobacillus johnsonii NCC 533 2743179 NP_965639.1 CDS LJ0616 NC_005362.1 1757870 1760164 R contains superfamily I DNA and RNA helicase domain; hypothetical protein complement(1757870..1760164) Lactobacillus johnsonii NCC 533 2742808 NP_965640.1 CDS LJ0615 NC_005362.1 1760333 1760977 D hypothetical protein 1760333..1760977 Lactobacillus johnsonii NCC 533 2742505 NP_965641.1 CDS LJ0614 NC_005362.1 1761379 1762665 D cation-transporting ATPase 1761379..1762665 Lactobacillus johnsonii NCC 533 2742790 NP_965642.1 CDS LJ0613 NC_005362.1 1762550 1764064 D cation-transporting ATPase 1762550..1764064 Lactobacillus johnsonii NCC 533 2742504 NP_965643.1 CDS LJ0612 NC_005362.1 1764285 1765103 R contains transcriptional regulator helix-turn-helix domain; hypothetical protein complement(1764285..1765103) Lactobacillus johnsonii NCC 533 2743711 NP_965644.1 CDS LJ0611 NC_005362.1 1765232 1765924 D possible N-acetylmannosamine-6-phosphate epimerase; Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1765232..1765924 Lactobacillus johnsonii NCC 533 2742852 NP_965645.1 CDS LJ0610 NC_005362.1 1765952 1768018 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, glucose specific 1765952..1768018 Lactobacillus johnsonii NCC 533 2742494 NP_965646.1 CDS LJ0609 NC_005362.1 1768093 1768878 R ExoA; exodeoxyribonuclease A complement(1768093..1768878) Lactobacillus johnsonii NCC 533 2743272 NP_965647.1 CDS LJ0608 NC_005362.1 1768984 1769328 R hypothetical protein complement(1768984..1769328) Lactobacillus johnsonii NCC 533 2743265 NP_965648.1 CDS LJ0607 NC_005362.1 1769432 1769647 D hypothetical protein 1769432..1769647 Lactobacillus johnsonii NCC 533 2743297 NP_965649.1 CDS LJ0606 NC_005362.1 1769690 1770340 D phosphoglycerate mutase 1769690..1770340 Lactobacillus johnsonii NCC 533 2743001 NP_965650.1 CDS LJ0605 NC_005362.1 1770375 1772237 R hypothetical protein complement(1770375..1772237) Lactobacillus johnsonii NCC 533 2743137 NP_965651.1 CDS LJ0604 NC_005362.1 1772257 1773003 R ABC transporter ATPase component complement(1772257..1773003) Lactobacillus johnsonii NCC 533 2743697 NP_965652.1 CDS LJ0603 NC_005362.1 1773243 1774685 D contains amino acid permease domain; hypothetical protein 1773243..1774685 Lactobacillus johnsonii NCC 533 2743629 NP_965653.1 CDS LJ0602 NC_005362.1 1774761 1775480 R hypothetical protein complement(1774761..1775480) Lactobacillus johnsonii NCC 533 2743436 NP_965654.1 CDS LJ0601 NC_005362.1 1775477 1776211 R hypothetical protein complement(1775477..1776211) Lactobacillus johnsonii NCC 533 2743671 NP_965655.1 CDS LJ0600 NC_005362.1 1776213 1776983 R ABC transporter ATPase component complement(1776213..1776983) Lactobacillus johnsonii NCC 533 2743453 NP_965656.1 CDS LJ0599 NC_005362.1 1777904 1779184 D contains GTPase domain; hypothetical protein 1777904..1779184 Lactobacillus johnsonii NCC 533 2743674 NP_965657.1 CDS LJ0598 NC_005362.1 1779228 1780436 R contains uncharacterized ACR domain; hypothetical protein complement(1779228..1780436) Lactobacillus johnsonii NCC 533 2742340 NP_965658.1 CDS LJ0597 NC_005362.1 1780540 1781745 R contains NLP/P60 family domain; hypothetical protein complement(1780540..1781745) Lactobacillus johnsonii NCC 533 2742227 NP_965659.1 CDS LJ0596 NC_005362.1 1781939 1782496 R guanylate kinase complement(1781939..1782496) Lactobacillus johnsonii NCC 533 2742273 NP_965660.1 CDS LJ0595 NC_005362.1 1782587 1782880 D hypothetical protein 1782587..1782880 Lactobacillus johnsonii NCC 533 2742329 NP_965661.1 CDS LJ0594 NC_005362.1 1782929 1784458 D hypothetical protein 1782929..1784458 Lactobacillus johnsonii NCC 533 2742267 NP_965662.1 CDS LJ0593 NC_005362.1 1784528 1785154 R hypothetical protein complement(1784528..1785154) Lactobacillus johnsonii NCC 533 2742413 NP_965663.1 CDS nrdI NC_005362.1 1785296 1785757 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 1785296..1785757 Lactobacillus johnsonii NCC 533 2742270 NP_965664.1 CDS nrdF NC_005362.1 1785750 1786691 D contains ribonucleotide reductase, small chain domain; B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1785750..1786691 Lactobacillus johnsonii NCC 533 2742328 NP_965665.1 CDS LJ0590 NC_005362.1 1786716 1787201 R hypothetical protein complement(1786716..1787201) Lactobacillus johnsonii NCC 533 2742728 NP_965666.1 CDS LJ0589 NC_005362.1 1787287 1787628 R contains PemK-like protein domain; hypothetical protein complement(1787287..1787628) Lactobacillus johnsonii NCC 533 2742706 NP_965667.1 CDS LJ0588 NC_005362.1 1787615 1787866 R hypothetical protein complement(1787615..1787866) Lactobacillus johnsonii NCC 533 2742708 NP_965668.1 CDS LJ0587 NC_005362.1 1788097 1788567 R hypothetical protein complement(1788097..1788567) Lactobacillus johnsonii NCC 533 2742326 NP_965669.1 CDS LJ0586 NC_005362.1 1788567 1789349 R contains permease domain; hypothetical protein complement(1788567..1789349) Lactobacillus johnsonii NCC 533 2741864 NP_965670.1 CDS LJ0585 NC_005362.1 1789366 1790913 R ABC transporter ATPase component complement(1789366..1790913) Lactobacillus johnsonii NCC 533 2743754 NP_965671.1 CDS LJ0584 NC_005362.1 1790913 1791296 R hypothetical protein complement(1790913..1791296) Lactobacillus johnsonii NCC 533 2742830 NP_965672.1 CDS LJ0583 NC_005362.1 1791521 1791793 D hypothetical protein 1791521..1791793 Lactobacillus johnsonii NCC 533 2743417 NP_965673.1 CDS LJ0582 NC_005362.1 1791898 1793022 R similar to transcriptional regulator lytR; hypothetical protein complement(1791898..1793022) Lactobacillus johnsonii NCC 533 2743391 NP_965674.1 CDS LJ0581 NC_005362.1 1793186 1794994 D oligoendopeptidase F 1793186..1794994 Lactobacillus johnsonii NCC 533 2743379 NP_965675.1 CDS LJ0580 NC_005362.1 1795063 1796574 R L-lactate permease complement(1795063..1796574) Lactobacillus johnsonii NCC 533 2742975 NP_965676.1 CDS LJ0579 NC_005362.1 1796696 1797487 R possibly for Mn/Zn; ABC transporter permease component complement(1796696..1797487) Lactobacillus johnsonii NCC 533 2743358 NP_965677.1 CDS LJ0578 NC_005362.1 1797487 1798146 R possibly for Mn/Zn; ABC transporter ATPase component complement(1797487..1798146) Lactobacillus johnsonii NCC 533 2742992 NP_965678.1 CDS LJ0577 NC_005362.1 1798183 1799082 R possibly for Mn/Zn; ABC transporter solute-binding component complement(1798183..1799082) Lactobacillus johnsonii NCC 533 2743061 NP_965679.1 CDS LJ0576 NC_005362.1 1799383 1799661 R contains transcriptional regulator helix-turn-helix domain, arsR family; hypothetical protein complement(1799383..1799661) Lactobacillus johnsonii NCC 533 2743281 NP_965680.1 CDS LJ0575 NC_005362.1 1799691 1800476 R contains predicted hydrolases of the HAD superfamily domain; hypothetical protein complement(1799691..1800476) Lactobacillus johnsonii NCC 533 2743185 NP_965681.1 CDS LJ0574 NC_005362.1 1800576 1805291 R hypothetical protein complement(1800576..1805291) Lactobacillus johnsonii NCC 533 2743311 NP_965682.1 CDS LJ0573 NC_005362.1 1805547 1806014 R hypothetical protein complement(1805547..1806014) Lactobacillus johnsonii NCC 533 2743254 NP_965683.1 CDS LJ0572 NC_005362.1 1806355 1808340 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, fructose specific complement(1806355..1808340) Lactobacillus johnsonii NCC 533 2743042 NP_965684.1 CDS LJ0571 NC_005362.1 1808381 1809295 R fructose-1-phosphate kinase complement(1808381..1809295) Lactobacillus johnsonii NCC 533 2743209 NP_965685.1 CDS LJ0570 NC_005362.1 1809292 1810050 R contains bacterial regulatory protein deoR domain; hypothetical protein complement(1809292..1810050) Lactobacillus johnsonii NCC 533 2742087 NP_965686.1 CDS LJ0569 NC_005362.1 1810227 1812533 R alpha-glucosidase complement(1810227..1812533) Lactobacillus johnsonii NCC 533 2743166 NP_965687.1 CDS LJ0568 NC_005362.1 1812618 1813844 R ABC transporter permease component complement(1812618..1813844) Lactobacillus johnsonii NCC 533 2743092 NP_965688.1 CDS LJ0567 NC_005362.1 1813837 1814733 R ABC transporter ATPase component complement(1813837..1814733) Lactobacillus johnsonii NCC 533 2743103 NP_965689.1 CDS LJ0566 NC_005362.1 1814858 1815607 R aspartate racemase complement(1814858..1815607) Lactobacillus johnsonii NCC 533 2742128 NP_965690.1 CDS murE NC_005362.1 1815610 1817181 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1815610..1817181) Lactobacillus johnsonii NCC 533 2742098 NP_965691.1 CDS LJ0564 NC_005362.1 1817218 1818375 R two-component system histidine kinase complement(1817218..1818375) Lactobacillus johnsonii NCC 533 2742041 NP_965692.1 CDS LJ0563 NC_005362.1 1818381 1819067 R two-component system response regulator complement(1818381..1819067) Lactobacillus johnsonii NCC 533 2742125 NP_965693.1 CDS LJ0562 NC_005362.1 1819218 1821074 R ABC transporter ATPase and permease components complement(1819218..1821074) Lactobacillus johnsonii NCC 533 2741962 NP_965694.1 CDS LJ0561 NC_005362.1 1821088 1822818 R ABC transporter ATPase and permease components complement(1821088..1822818) Lactobacillus johnsonii NCC 533 2742032 NP_965695.1 CDS LJ0560 NC_005362.1 1822954 1823787 R hypothetical protein complement(1822954..1823787) Lactobacillus johnsonii NCC 533 2741987 NP_965696.1 CDS LJ0559 NC_005362.1 1823799 1824899 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1823799..1824899) Lactobacillus johnsonii NCC 533 2742615 NP_965697.1 CDS LJ0558 NC_005362.1 1824922 1825170 R hypothetical protein complement(1824922..1825170) Lactobacillus johnsonii NCC 533 2742637 NP_965698.1 CDS LJ0557 NC_005362.1 1825190 1826071 R chromosome partitioning protein ParB complement(1825190..1826071) Lactobacillus johnsonii NCC 533 2743458 NP_965699.1 CDS LJ0556 NC_005362.1 1826055 1826828 R chromosome partitioning protein ParA complement(1826055..1826828) Lactobacillus johnsonii NCC 533 2742103 NP_965700.1 CDS LJ0555 NC_005362.1 1826844 1827725 R chromosome partitioning protein ParB complement(1826844..1827725) Lactobacillus johnsonii NCC 533 2743504 NP_965701.1 CDS gidB NC_005362.1 1827747 1828466 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(1827747..1828466) Lactobacillus johnsonii NCC 533 2742244 NP_965702.1 CDS LJ0553 NC_005362.1 1828665 1829201 D hypothetical protein 1828665..1829201 Lactobacillus johnsonii NCC 533 2742859 NP_965703.1 CDS LJ0552 NC_005362.1 1829246 1830172 R contains thiamine biosynthesis lipoprotein domain apbE; hypothetical protein complement(1829246..1830172) Lactobacillus johnsonii NCC 533 2743148 NP_965704.1 CDS LJ0551 NC_005362.1 1830169 1830972 R hypothetical protein complement(1830169..1830972) Lactobacillus johnsonii NCC 533 2743304 NP_965705.1 CDS LJ0550 NC_005362.1 1830983 1832020 R hypothetical protein complement(1830983..1832020) Lactobacillus johnsonii NCC 533 2743036 NP_965706.1 CDS LJ0549 NC_005362.1 1832151 1832705 R contains predicted flavoprotein domain; hypothetical protein complement(1832151..1832705) Lactobacillus johnsonii NCC 533 2742869 NP_965707.1 CDS LJ0548 NC_005362.1 1832718 1833254 R contains predicted flavoprotein domain; hypothetical protein complement(1832718..1833254) Lactobacillus johnsonii NCC 533 2743300 NP_965708.1 CDS LJ0547 NC_005362.1 1833390 1834013 R contains bacterial regulatory protein tetR domain; hypothetical protein complement(1833390..1834013) Lactobacillus johnsonii NCC 533 2742399 NP_965709.1 CDS LJ0546 NC_005362.1 1834159 1834401 R hypothetical protein complement(1834159..1834401) Lactobacillus johnsonii NCC 533 2742710 NP_965710.1 CDS LJ0545 NC_005362.1 1834479 1835891 D dipeptidase 1834479..1835891 Lactobacillus johnsonii NCC 533 2742354 NP_965711.1 CDS LJ0544 NC_005362.1 1835953 1837431 R 6-phospho-beta-glucosidase complement(1835953..1837431) Lactobacillus johnsonii NCC 533 2743597 NP_965712.1 CDS LJ0543 NC_005362.1 1837441 1839303 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucosides specific complement(1837441..1839303) Lactobacillus johnsonii NCC 533 2742477 NP_965713.1 CDS LJ0542 NC_005362.1 1839300 1840148 R contains transcriptional antiterminator bglG domain; hypothetical protein complement(1839300..1840148) Lactobacillus johnsonii NCC 533 2743620 NP_965714.1 CDS LJ0541 NC_005362.1 1840291 1840971 R ABC transporter ATPase component complement(1840291..1840971) Lactobacillus johnsonii NCC 533 2742444 NP_965715.1 CDS LJ0540 NC_005362.1 1840986 1842038 R ABC transporter permease component complement(1840986..1842038) Lactobacillus johnsonii NCC 533 2742232 NP_965716.1 CDS LJ0539 NC_005362.1 1842045 1842566 R contains bacterial regulatory protein tetR domain; hypothetical protein complement(1842045..1842566) Lactobacillus johnsonii NCC 533 2743524 NP_965717.1 CDS LJ0538 NC_005362.1 1842698 1843297 R contains phosphoglycerate mutase domain; hypothetical protein complement(1842698..1843297) Lactobacillus johnsonii NCC 533 2742083 NP_965718.1 CDS LJ0537 NC_005362.1 1843304 1843930 R contains phosphoglycerate mutase domain; hypothetical protein complement(1843304..1843930) Lactobacillus johnsonii NCC 533 2743227 NP_965719.1 CDS LJ0536 NC_005362.1 1844051 1844800 D contains alpha/beta hydrolase fold domain; hypothetical protein 1844051..1844800 Lactobacillus johnsonii NCC 533 2743198 NP_965720.1 CDS LJ0535 NC_005362.1 1844842 1845600 R hypothetical protein complement(1844842..1845600) Lactobacillus johnsonii NCC 533 2742983 NP_965721.1 CDS LJ0534 NC_005362.1 1845590 1845949 R hypothetical protein complement(1845590..1845949) Lactobacillus johnsonii NCC 533 2743275 NP_965722.1 CDS LJ0533 NC_005362.1 1846064 1846753 D hypothetical protein 1846064..1846753 Lactobacillus johnsonii NCC 533 2742990 NP_965723.1 CDS LJ0532 NC_005362.1 1846821 1847720 R hypothetical protein complement(1846821..1847720) Lactobacillus johnsonii NCC 533 2743342 NP_965724.1 CDS LJ0531 NC_005362.1 1847725 1849056 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific complement(1847725..1849056) Lactobacillus johnsonii NCC 533 2742926 NP_965725.1 CDS LJ0530 NC_005362.1 1849205 1850983 R contains glycerophosphoryl diester phosphodiester domain; hypothetical protein complement(1849205..1850983) Lactobacillus johnsonii NCC 533 2741922 NP_965726.1 CDS LJ0529 NC_005362.1 1851065 1851826 R hypothetical protein complement(1851065..1851826) Lactobacillus johnsonii NCC 533 2743680 NP_965727.1 CDS LJ0528 NC_005362.1 1852029 1852880 R contains transcriptional regulator helix-turn-helix domain, rpiR family; hypothetical protein complement(1852029..1852880) Lactobacillus johnsonii NCC 533 2742568 NP_965728.1 CDS LJ0527 NC_005362.1 1852929 1853705 R hypothetical protein complement(1852929..1853705) Lactobacillus johnsonii NCC 533 2743106 NP_965729.1 CDS LJ0526 NC_005362.1 1853857 1854279 R contains 3-dehydroquinate dehydratase domain; hypothetical protein complement(1853857..1854279) Lactobacillus johnsonii NCC 533 2742640 NP_965730.1 CDS LJ0525 NC_005362.1 1854340 1855206 R hypothetical protein complement(1854340..1855206) Lactobacillus johnsonii NCC 533 2742173 NP_965731.1 CDS LJ0524 NC_005362.1 1855382 1855813 D contains permease domain; hypothetical protein 1855382..1855813 Lactobacillus johnsonii NCC 533 2742622 NP_965732.1 CDS LJ0523 NC_005362.1 1855774 1856595 D contains permease domain; hypothetical protein 1855774..1856595 Lactobacillus johnsonii NCC 533 2742597 NP_965733.1 CDS LJ0522 NC_005362.1 1856618 1857301 D contains glutamine amidotransferase class-I domain; hypothetical protein 1856618..1857301 Lactobacillus johnsonii NCC 533 2743655 NP_965734.1 CDS LJ0521 NC_005362.1 1857344 1858954 R ABC transporter ATPase and permease components complement(1857344..1858954) Lactobacillus johnsonii NCC 533 2742036 NP_965735.1 CDS LJ0520 NC_005362.1 1858974 1859480 R contains appr-1'-p processing enzyme domain; hypothetical protein complement(1858974..1859480) Lactobacillus johnsonii NCC 533 2742356 NP_965736.1 CDS LJ0519 NC_005362.1 1859597 1861540 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific complement(1859597..1861540) Lactobacillus johnsonii NCC 533 2742320 NP_965737.1 CDS LJ0518 NC_005362.1 1861776 1863245 D sucrose-6-phosphate hydrolase 1861776..1863245 Lactobacillus johnsonii NCC 533 2743485 NP_965738.1 CDS LJ0517 NC_005362.1 1863256 1864242 D sucrose operon repressor 1863256..1864242 Lactobacillus johnsonii NCC 533 2742124 NP_965739.1 CDS LJ0516 NC_005362.1 1864280 1865056 R hypothetical protein complement(1864280..1865056) Lactobacillus johnsonii NCC 533 2742099 NP_965740.1 CDS LJ0515 NC_005362.1 1865259 1866074 D phosphomethylpyrimidine kinase (HMP-phosphate kinase) 1865259..1866074 Lactobacillus johnsonii NCC 533 2743096 NP_965741.1 CDS LJ0514 NC_005362.1 1866150 1866833 D hypothetical protein 1866150..1866833 Lactobacillus johnsonii NCC 533 2743016 NP_965742.1 CDS LJ0513 NC_005362.1 1866814 1868202 D contains amino acid permease domain; hypothetical protein 1866814..1868202 Lactobacillus johnsonii NCC 533 2743149 NP_965743.1 CDS LJ0512 NC_005362.1 1868240 1869142 R contains DUF6 domain; hypothetical protein complement(1868240..1869142) Lactobacillus johnsonii NCC 533 2743310 NP_965744.1 CDS LJ0511 NC_005362.1 1869563 1870573 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1869563..1870573 Lactobacillus johnsonii NCC 533 2742784 NP_965745.1 CDS LJ0510 NC_005362.1 1870620 1872020 R contains amino acid permease domain; hypothetical protein complement(1870620..1872020) Lactobacillus johnsonii NCC 533 2743406 NP_965746.1 CDS LJ0509 NC_005362.1 1872038 1872763 R contains glutamine amidotransferase class-I domain; hypothetical protein complement(1872038..1872763) Lactobacillus johnsonii NCC 533 2742896 NP_965747.1 CDS LJ0508 NC_005362.1 1872926 1874308 R contains amino acid permease domain; hypothetical protein complement(1872926..1874308) Lactobacillus johnsonii NCC 533 2743047 NP_965748.1 CDS LJ0507 NC_005362.1 1874298 1875692 R contains amino acid permease domain; hypothetical protein complement(1874298..1875692) Lactobacillus johnsonii NCC 533 2742969 NP_965749.1 CDS LJ0506 NC_005362.1 1875850 1876212 R hypothetical protein complement(1875850..1876212) Lactobacillus johnsonii NCC 533 2742507 NP_965750.1 CDS LJ0505 NC_005362.1 1876277 1877206 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIID mannose specific complement(1876277..1877206) Lactobacillus johnsonii NCC 533 2742882 NP_965751.1 CDS LJ0504 NC_005362.1 1877236 1878039 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific complement(1877236..1878039) Lactobacillus johnsonii NCC 533 2742874 NP_965752.1 CDS LJ0503 NC_005362.1 1878061 1879056 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, mannose specific complement(1878061..1879056) Lactobacillus johnsonii NCC 533 2742813 NP_965753.1 CDS LJ1774 NC_005362.1 1890385 1891782 R amino acid transporter complement(1890385..1891782) Lactobacillus johnsonii NCC 533 2742578 NP_965754.1 CDS LJ1775 NC_005362.1 1891909 1894023 R ATP-dependent Clp protease ATP-binding subunit clpE complement(1891909..1894023) Lactobacillus johnsonii NCC 533 2742022 NP_965755.1 CDS LJ1776 NC_005362.1 1894276 1895187 R hypothetical protein complement(1894276..1895187) Lactobacillus johnsonii NCC 533 2741935 NP_965756.1 CDS LJ1777 NC_005362.1 1895177 1896496 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific complement(1895177..1896496) Lactobacillus johnsonii NCC 533 2743206 NP_965757.1 CDS LJ1778 NC_005362.1 1896662 1896898 D hypothetical protein 1896662..1896898 Lactobacillus johnsonii NCC 533 2742211 NP_965758.1 CDS LJ1779 NC_005362.1 1897016 1898215 D major facilitator superfamily permease 1897016..1898215 Lactobacillus johnsonii NCC 533 2741909 NP_965759.1 CDS LJ1780 NC_005362.1 1898455 1899246 R contains penicillin binding protein domain; hypothetical protein complement(1898455..1899246) Lactobacillus johnsonii NCC 533 2742157 NP_965760.1 CDS LJ1781 NC_005362.1 1899408 1900709 R DltD precursor complement(1899408..1900709) Lactobacillus johnsonii NCC 533 2742308 NP_965761.1 CDS LJ1782 NC_005362.1 1900702 1900941 R D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 complement(1900702..1900941) Lactobacillus johnsonii NCC 533 2742680 NP_965762.1 CDS LJ1783 NC_005362.1 1900971 1902194 R DLTB protein complement(1900971..1902194) Lactobacillus johnsonii NCC 533 2742312 NP_965763.1 CDS LJ1784 NC_005362.1 1902191 1903699 R transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 complement(1902191..1903699) Lactobacillus johnsonii NCC 533 2742360 NP_965764.1 CDS LJ1785 NC_005362.1 1904013 1904303 R hypothetical protein complement(1904013..1904303) Lactobacillus johnsonii NCC 533 2742351 NP_965765.1 CDS LJ1786 NC_005362.1 1904306 1905457 R hypothetical protein complement(1904306..1905457) Lactobacillus johnsonii NCC 533 2742744 NP_965766.1 CDS LJ1787 NC_005362.1 1905813 1906124 R hypothetical protein complement(1905813..1906124) Lactobacillus johnsonii NCC 533 2743695 NP_965767.1 CDS LJ1788 NC_005362.1 1906129 1906473 R hypothetical protein complement(1906129..1906473) Lactobacillus johnsonii NCC 533 2742132 NP_965768.1 CDS LJ1789 NC_005362.1 1906475 1906762 R hypothetical protein complement(1906475..1906762) Lactobacillus johnsonii NCC 533 2742741 NP_965769.1 CDS LJ1790 NC_005362.1 1907049 1907333 D hypothetical protein 1907049..1907333 Lactobacillus johnsonii NCC 533 2742722 NP_965770.1 CDS LJ1791 NC_005362.1 1907660 1908154 D contains CBS domain; hypothetical protein 1907660..1908154 Lactobacillus johnsonii NCC 533 2742279 NP_965771.1 CDS LJ1792 NC_005362.1 1908225 1910096 D cation-transporting ATPase 1908225..1910096 Lactobacillus johnsonii NCC 533 2742283 NP_965772.1 CDS LJ1793 NC_005362.1 1910268 1911428 D Na+/H+ antiporter 1910268..1911428 Lactobacillus johnsonii NCC 533 2743625 NP_965773.1 CDS LJ1794 NC_005362.1 1911465 1912118 R hypothetical protein complement(1911465..1912118) Lactobacillus johnsonii NCC 533 2743601 NP_965774.1 CDS LJ1795 NC_005362.1 1912118 1913686 R ABC transporter ATPase and permease components complement(1912118..1913686) Lactobacillus johnsonii NCC 533 2743462 NP_965775.1 CDS LJ1796 NC_005362.1 1913791 1914654 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1913791..1914654 Lactobacillus johnsonii NCC 533 2743540 NP_965776.1 CDS LJ1797 NC_005362.1 1914679 1914909 R hypothetical protein complement(1914679..1914909) Lactobacillus johnsonii NCC 533 2743461 NP_965777.1 CDS LJ1798 NC_005362.1 1914926 1915573 R catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase complement(1914926..1915573) Lactobacillus johnsonii NCC 533 2742466 NP_965778.1 CDS LJ1799 NC_005362.1 1915593 1916516 R hypothetical protein complement(1915593..1916516) Lactobacillus johnsonii NCC 533 2743484 NP_965779.1 CDS LJ1800 NC_005362.1 1916518 1917192 R hypothetical protein complement(1916518..1917192) Lactobacillus johnsonii NCC 533 2742447 NP_965780.1 CDS LJ1801 NC_005362.1 1917306 1917794 R hypothetical protein complement(1917306..1917794) Lactobacillus johnsonii NCC 533 2743658 NP_965781.1 CDS LJ1802 NC_005362.1 1917817 1918239 R hypothetical protein complement(1917817..1918239) Lactobacillus johnsonii NCC 533 2743690 NP_965782.1 CDS LJ1803 NC_005362.1 1918304 1918828 R hypothetical protein complement(1918304..1918828) Lactobacillus johnsonii NCC 533 2742436 NP_965783.1 CDS LJ1804 NC_005362.1 1918971 1920425 D phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, galactitol specific 1918971..1920425 Lactobacillus johnsonii NCC 533 2742481 NP_965784.1 CDS LJ1805 NC_005362.1 1920476 1920985 D hypothetical protein 1920476..1920985 Lactobacillus johnsonii NCC 533 2742700 NP_965785.1 CDS LJ1806 NC_005362.1 1921002 1921649 R contains CAAX amino terminal protease domain; hypothetical protein complement(1921002..1921649) Lactobacillus johnsonii NCC 533 2742411 NP_965786.1 CDS LJ1807 NC_005362.1 1921729 1922850 D hypothetical protein 1921729..1922850 Lactobacillus johnsonii NCC 533 2742303 NP_965787.1 CDS LJ1808 NC_005362.1 1922863 1924755 D ABC transporter ATPase component 1922863..1924755 Lactobacillus johnsonii NCC 533 2742164 NP_965788.1 CDS LJ1809 NC_005362.1 1924757 1925203 D ABC transporter permease component 1924757..1925203 Lactobacillus johnsonii NCC 533 2742753 NP_965789.1 CDS LJ1810 NC_005362.1 1925368 1926759 D cytochrome d ubiquinol oxidase subunit I 1925368..1926759 Lactobacillus johnsonii NCC 533 2742201 NP_965790.1 CDS LJ1811 NC_005362.1 1926759 1927781 D cytochrome d ubiquinol oxidase subunit II 1926759..1927781 Lactobacillus johnsonii NCC 533 2741947 NP_965791.1 CDS LJ1812 NC_005362.1 1927800 1929617 D ABC transporter ATPase and permease components 1927800..1929617 Lactobacillus johnsonii NCC 533 2741944 NP_965792.1 CDS LJ1813 NC_005362.1 1929614 1931359 D ABC transporter ATPase and permease components 1929614..1931359 Lactobacillus johnsonii NCC 533 2742120 NP_965793.1 CDS LJ1814 NC_005362.1 1931379 1932455 D contains 1,4-dihydroxy-2-naphthoate octaprenyltransferase domain; hypothetical protein 1931379..1932455 Lactobacillus johnsonii NCC 533 2743651 NP_965794.1 CDS LJ1815 NC_005362.1 1932520 1933452 D contains putative phosphate/phosphonate-binding protein domain; hypothetical protein 1932520..1933452 Lactobacillus johnsonii NCC 533 2742793 NP_965795.1 CDS LJ1816 NC_005362.1 1933546 1934616 D similar to CD4+ T cell-stimulating antigen precursor; hypothetical protein 1933546..1934616 Lactobacillus johnsonii NCC 533 2742815 NP_965796.1 CDS LJ1817 NC_005362.1 1934639 1935499 R contains transcriptional regulator helix-turn-helix domain, rpiR family domain; hypothetical protein complement(1934639..1935499) Lactobacillus johnsonii NCC 533 2743701 NP_965797.1 CDS LJ1818 NC_005362.1 1935502 1936572 R hypothetical protein complement(1935502..1936572) Lactobacillus johnsonii NCC 533 2742072 NP_965798.1 CDS murQ NC_005362.1 1936629 1937525 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase complement(1936629..1937525) Lactobacillus johnsonii NCC 533 2742081 NP_965799.1 CDS LJ1820 NC_005362.1 1937534 1939537 R phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucoside specific complement(1937534..1939537) Lactobacillus johnsonii NCC 533 2742028 NP_965800.1 CDS LJ1821 NC_005362.1 1939856 1940611 D contains DUF81 domain; hypothetical protein 1939856..1940611 Lactobacillus johnsonii NCC 533 2742047 NP_965801.1 CDS LJ1822 NC_005362.1 1940696 1941535 R contains aldo/keto reductase domain; hypothetical protein complement(1940696..1941535) Lactobacillus johnsonii NCC 533 2741972 NP_965802.1 CDS LJ1823 NC_005362.1 1941662 1942381 D glucosamine-6-P isomerase 1941662..1942381 Lactobacillus johnsonii NCC 533 2741979 NP_965803.1 CDS LJ1824 NC_005362.1 1942591 1943238 D deoxyadenosine kinase 1942591..1943238 Lactobacillus johnsonii NCC 533 2742213 NP_965804.1 CDS LJ1825 NC_005362.1 1943260 1943934 D deoxyguanosine kinase 1943260..1943934 Lactobacillus johnsonii NCC 533 2742011 NP_965805.1 CDS LJ1826 NC_005362.1 1943988 1945226 R glycolate oxidase complement(1943988..1945226) Lactobacillus johnsonii NCC 533 2742684 NP_965806.1 CDS LJ1827 NC_005362.1 1945469 1946779 D contains uracil-xanthine permease domain; hypothetical protein 1945469..1946779 Lactobacillus johnsonii NCC 533 2741954 NP_965807.1 CDS LJ1828 NC_005362.1 1946864 1947598 R contains bacterial regulatory merR domain; hypothetical protein complement(1946864..1947598) Lactobacillus johnsonii NCC 533 2741865 NP_965808.1 CDS LJ1829 NC_005362.1 1947903 1949213 D contains uracil-xanthine permease domain; hypothetical protein 1947903..1949213 Lactobacillus johnsonii NCC 533 2742229 NP_965809.1 CDS LJ1830 NC_005362.1 1949566 1950879 D contains uracil-xanthine permease domain; hypothetical protein 1949566..1950879 Lactobacillus johnsonii NCC 533 2742191 NP_965810.1 CDS LJ1831 NC_005362.1 1950987 1951472 D contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1950987..1951472 Lactobacillus johnsonii NCC 533 2741884 NP_965811.1 CDS LJ1832 NC_005362.1 1951537 1951950 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1951537..1951950 Lactobacillus johnsonii NCC 533 2742553 NP_965812.1 CDS LJ1833 NC_005362.1 1952032 1952577 R hypothetical protein complement(1952032..1952577) Lactobacillus johnsonii NCC 533 2741879 NP_965813.1 CDS LJ1834 NC_005362.1 1952599 1953156 R hypothetical protein complement(1952599..1953156) Lactobacillus johnsonii NCC 533 2743688 NP_965814.1 CDS LJ1835 NC_005362.1 1953314 1953748 D CopAB ATPase metal-fist type repressor 1953314..1953748 Lactobacillus johnsonii NCC 533 2742344 NP_965815.1 CDS LJ1836 NC_005362.1 1953761 1954138 D hypothetical protein 1953761..1954138 Lactobacillus johnsonii NCC 533 2741868 NP_965816.1 CDS LJ1837 NC_005362.1 1954156 1954443 D hypothetical protein 1954156..1954443 Lactobacillus johnsonii NCC 533 2741902 NP_965817.1 CDS LJ1838 NC_005362.1 1954443 1956368 D cation-transporting ATPase PacS 1954443..1956368 Lactobacillus johnsonii NCC 533 2742642 NP_965818.1 CDS LJ1839 NC_005362.1 1956573 1962017 D contains gram positive anchor domain; hypothetical protein 1956573..1962017 Lactobacillus johnsonii NCC 533 2743505 NP_965819.1 CDS LJ1840 NC_005362.1 1962122 1968751 R cell wall-associated serine proteinase complement(1962122..1968751) Lactobacillus johnsonii NCC 533 2743645 NP_965820.1 CDS prsA NC_005362.1 1969039 1969935 D cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidylprolyl isomerase 1969039..1969935 Lactobacillus johnsonii NCC 533 2743532 NP_965821.1 CDS LJ1842 NC_005362.1 1970494 1971975 R amino acid transporter complement(1970494..1971975) Lactobacillus johnsonii NCC 533 2742386 NP_965822.1 CDS LJ1843 NC_005362.1 1972219 1974318 D ornithine decarboxylase 1972219..1974318 Lactobacillus johnsonii NCC 533 2743451 NP_965823.1 CDS LJ1844 NC_005362.1 1974321 1975589 D contains cystathionine beta-lyase/cystathionine gamma-synthase domain; hypothetical protein 1974321..1975589 Lactobacillus johnsonii NCC 533 2743556 NP_965824.1 CDS LJ1845 NC_005362.1 1975660 1976073 R contains acetyltransferase (GNAT) domain; hypothetical protein complement(1975660..1976073) Lactobacillus johnsonii NCC 533 2743552 NP_965825.1 CDS LJ1846 NC_005362.1 1976338 1977681 D major facilitator superfamily permease 1976338..1977681 Lactobacillus johnsonii NCC 533 2743509 NP_965826.1 CDS LJ1847 NC_005362.1 1977736 1978134 D hypothetical protein 1977736..1978134 Lactobacillus johnsonii NCC 533 2743447 NP_965827.1 CDS LJ1848 NC_005362.1 1978287 1979879 R ABC transporter ATPase component complement(1978287..1979879) Lactobacillus johnsonii NCC 533 2742389 NP_965828.1 CDS LJ1850 NC_005362.1 1980275 1982137 D contains DNA mutS mismatch repair domain; hypothetical protein 1980275..1982137 Lactobacillus johnsonii NCC 533 2743090 NP_965829.1 CDS LJ1851 NC_005362.1 1982223 1983776 R similar to chloride channel protein EriC; hypothetical protein complement(1982223..1983776) Lactobacillus johnsonii NCC 533 2742382 NP_965830.1 CDS LJ1852 NC_005362.1 1983876 1985264 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(1983876..1985264) Lactobacillus johnsonii NCC 533 2743095 NP_965831.1 CDS LJ1853 NC_005362.1 1985410 1987110 R pyruvate oxidase complement(1985410..1987110) Lactobacillus johnsonii NCC 533 2743574 NP_965832.1 CDS LJ1854 NC_005362.1 1987355 1989253 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(1987355..1989253) Lactobacillus johnsonii NCC 533 2743113 NP_965833.1 CDS trmE NC_005362.1 1989261 1990646 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(1989261..1990646) Lactobacillus johnsonii NCC 533 2743152 NP_965834.1 CDS LJ1856 NC_005362.1 1990757 1991632 R stage III sporulation protein J precursor complement(1990757..1991632) Lactobacillus johnsonii NCC 533 2743162 NP_965835.1 CDS rnpA NC_005362.1 1991634 1992002 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(1991634..1992002) Lactobacillus johnsonii NCC 533 2743126 LJT001 tRNA LJT001 NC_005362.1 19503 19578 D tRNA-Thr 19503..19578 Lactobacillus johnsonii NCC 533 2742792 LJT002 tRNA LJT002 NC_005362.1 21315 21390 D tRNA-Thr 21315..21390 Lactobacillus johnsonii NCC 533 2742931 LJT003 tRNA LJT003 NC_005362.1 85937 86009 R tRNA-Lys complement(85937..86009) Lactobacillus johnsonii NCC 533 2742652 LJT004 tRNA LJT004 NC_005362.1 87617 87689 R tRNA-Lys complement(87617..87689) Lactobacillus johnsonii NCC 533 2743508 LJT005 tRNA LJT005 NC_005362.1 209038 209110 D tRNA-Thr 209038..209110 Lactobacillus johnsonii NCC 533 2743118 LJT006 tRNA LJT006 NC_005362.1 228891 228961 R tRNA-Gly complement(228891..228961) Lactobacillus johnsonii NCC 533 2741892 LJT007 tRNA LJT007 NC_005362.1 327595 327669 D tRNA-Gly 327595..327669 Lactobacillus johnsonii NCC 533 2742539 LJT008 tRNA LJT008 NC_005362.1 327710 327783 D tRNA-Pro 327710..327783 Lactobacillus johnsonii NCC 533 2743531 LJT009 tRNA LJT009 NC_005362.1 340597 340667 D tRNA-Ser 340597..340667 Lactobacillus johnsonii NCC 533 2743130 LJT010 tRNA LJT010 NC_005362.1 340727 340798 D tRNA-Glu 340727..340798 Lactobacillus johnsonii NCC 533 2741976 LJT011 tRNA LJT011 NC_005362.1 340937 341018 D tRNA-Tyr 340937..341018 Lactobacillus johnsonii NCC 533 2741854 LJT012 tRNA LJT012 NC_005362.1 341099 341172 D tRNA-Phe 341099..341172 Lactobacillus johnsonii NCC 533 2743733 LJT013 tRNA LJT013 NC_005362.1 563466 563538 D tRNA-Asn 563466..563538 Lactobacillus johnsonii NCC 533 2741939 LJT014 tRNA LJT014 NC_005362.1 563561 563650 D tRNA-Ser 563561..563650 Lactobacillus johnsonii NCC 533 2743329 LJT015 tRNA LJT015 NC_005362.1 563769 563840 D tRNA-Glu 563769..563840 Lactobacillus johnsonii NCC 533 2742186 LJT016 tRNA LJT016 NC_005362.1 563864 563936 D tRNA-Val 563864..563936 Lactobacillus johnsonii NCC 533 2743653 LJT017 tRNA LJT017 NC_005362.1 707462 707534 D tRNA-Arg 707462..707534 Lactobacillus johnsonii NCC 533 2743734 LJT018 tRNA LJT018 NC_005362.1 775832 775903 R tRNA-OTHER complement(775832..775903) Lactobacillus johnsonii NCC 533 2742403 LJT019 tRNA LJT019 NC_005362.1 828305 828376 D tRNA-Glu 828305..828376 Lactobacillus johnsonii NCC 533 2742238 LJT020 tRNA LJT020 NC_005362.1 828382 828454 D tRNA-Gln 828382..828454 Lactobacillus johnsonii NCC 533 2743762 LJT021 tRNA LJT021 NC_005362.1 1316937 1317009 R tRNA-Glu complement(1316937..1317009) Lactobacillus johnsonii NCC 533 2742682 LJT022 tRNA LJT022 NC_005362.1 1330469 1330556 R tRNA-Ser complement(1330469..1330556) Lactobacillus johnsonii NCC 533 2742373 LJT023 tRNA LJT023 NC_005362.1 1454674 1454747 R tRNA-Arg complement(1454674..1454747) Lactobacillus johnsonii NCC 533 2743273 LJT024 tRNA LJT024 NC_005362.1 1553948 1554034 R tRNA-Leu complement(1553948..1554034) Lactobacillus johnsonii NCC 533 2742119 LJT025 tRNA LJT025 NC_005362.1 1609296 1609384 R tRNA-Leu complement(1609296..1609384) Lactobacillus johnsonii NCC 533 2742304 LJT026 tRNA LJT026 NC_005362.1 1631292 1631363 R tRNA-Gln complement(1631292..1631363) Lactobacillus johnsonii NCC 533 2742058 LJT027 tRNA LJT027 NC_005362.1 1631419 1631500 R tRNA-Tyr complement(1631419..1631500) Lactobacillus johnsonii NCC 533 2743521 LJT028 tRNA LJT028 NC_005362.1 1633336 1633407 R tRNA-Gln complement(1633336..1633407) Lactobacillus johnsonii NCC 533 2742537 LJT029 tRNA LJT029 NC_005362.1 1643767 1643839 R tRNA-Thr complement(1643767..1643839) Lactobacillus johnsonii NCC 533 2743365 LJT030 tRNA LJT030 NC_005362.1 1659716 1659788 R tRNA-Asn complement(1659716..1659788) Lactobacillus johnsonii NCC 533 2742030 LJT031 tRNA LJT031 NC_005362.1 1665073 1665162 R tRNA-Ser complement(1665073..1665162) Lactobacillus johnsonii NCC 533 2742471 LJT032 tRNA LJT032 NC_005362.1 1665165 1665238 R tRNA-Ile complement(1665165..1665238) Lactobacillus johnsonii NCC 533 2743649 LJT033 tRNA LJT033 NC_005362.1 1665247 1665320 R tRNA-Gly complement(1665247..1665320) Lactobacillus johnsonii NCC 533 2742263 LJT034 tRNA LJT034 NC_005362.1 1665338 1665410 R tRNA-Phe complement(1665338..1665410) Lactobacillus johnsonii NCC 533 2742365 LJT035 tRNA LJT035 NC_005362.1 1665415 1665487 R tRNA-Asp complement(1665415..1665487) Lactobacillus johnsonii NCC 533 2742472 LJT036 tRNA LJT036 NC_005362.1 1665491 1665564 R tRNA-Met complement(1665491..1665564) Lactobacillus johnsonii NCC 533 2743554 LJT037 tRNA LJT037 NC_005362.1 1665596 1665669 R tRNA-Met complement(1665596..1665669) Lactobacillus johnsonii NCC 533 2742454 LJT038 tRNA LJT038 NC_005362.1 1665683 1665756 R tRNA-Met complement(1665683..1665756) Lactobacillus johnsonii NCC 533 2743519 LJT039 tRNA LJT039 NC_005362.1 1665787 1665860 R tRNA-Pro complement(1665787..1665860) Lactobacillus johnsonii NCC 533 2743513 LJT040 tRNA LJT040 NC_005362.1 1665866 1665939 R tRNA-Arg complement(1665866..1665939) Lactobacillus johnsonii NCC 533 2743606 LJT041 tRNA LJT041 NC_005362.1 1665949 1666034 R tRNA-Leu complement(1665949..1666034) Lactobacillus johnsonii NCC 533 2743602 LJT042 tRNA LJT042 NC_005362.1 1666047 1666118 R tRNA-Gly complement(1666047..1666118) Lactobacillus johnsonii NCC 533 2743755 LJT043 tRNA LJT043 NC_005362.1 1666137 1666209 R tRNA-Thr complement(1666137..1666209) Lactobacillus johnsonii NCC 533 2743232 LJT044 tRNA LJT044 NC_005362.1 1666211 1666295 R tRNA-Leu complement(1666211..1666295) Lactobacillus johnsonii NCC 533 2742339 LJT045 tRNA LJT045 NC_005362.1 1666316 1666388 R tRNA-Lys complement(1666316..1666388) Lactobacillus johnsonii NCC 533 2742650 LJT046 tRNA LJT046 NC_005362.1 1666391 1666463 R tRNA-Val complement(1666391..1666463) Lactobacillus johnsonii NCC 533 2742693 LJT047 tRNA LJT047 NC_005362.1 1677348 1677431 R tRNA-Leu complement(1677348..1677431) Lactobacillus johnsonii NCC 533 2742887 LJT048 tRNA LJT048 NC_005362.1 1677463 1677533 R tRNA-Cys complement(1677463..1677533) Lactobacillus johnsonii NCC 533 2742917 LJT049 tRNA LJT049 NC_005362.1 1677554 1677625 R tRNA-Gln complement(1677554..1677625) Lactobacillus johnsonii NCC 533 2742892 LJT050 tRNA LJT050 NC_005362.1 1677630 1677705 R tRNA-His complement(1677630..1677705) Lactobacillus johnsonii NCC 533 2742000 LJT051 tRNA LJT051 NC_005362.1 1677720 1677790 R tRNA-Trp complement(1677720..1677790) Lactobacillus johnsonii NCC 533 2742162 LJT052 tRNA LJT052 NC_005362.1 1677798 1677879 R tRNA-Tyr complement(1677798..1677879) Lactobacillus johnsonii NCC 533 2742255 LJT053 tRNA LJT053 NC_005362.1 1677884 1677956 R tRNA-Phe complement(1677884..1677956) Lactobacillus johnsonii NCC 533 2741889 LJT054 tRNA LJT054 NC_005362.1 1677962 1678034 R tRNA-Asp complement(1677962..1678034) Lactobacillus johnsonii NCC 533 2742886 LJT055 tRNA LJT055 NC_005362.1 1678038 1678111 R tRNA-Met complement(1678038..1678111) Lactobacillus johnsonii NCC 533 2742822 LJT056 tRNA LJT056 NC_005362.1 1678119 1678209 R tRNA-Ser complement(1678119..1678209) Lactobacillus johnsonii NCC 533 2742765 LJT057 tRNA LJT057 NC_005362.1 1678236 1678307 R tRNA-Glu complement(1678236..1678307) Lactobacillus johnsonii NCC 533 2742747 LJT058 tRNA LJT058 NC_005362.1 1679522 1679611 R tRNA-Ser complement(1679522..1679611) Lactobacillus johnsonii NCC 533 2742262 LJT059 tRNA LJT059 NC_005362.1 1679614 1679687 R tRNA-Ile complement(1679614..1679687) Lactobacillus johnsonii NCC 533 2742478 LJT060 tRNA LJT060 NC_005362.1 1679696 1679769 R tRNA-Gly complement(1679696..1679769) Lactobacillus johnsonii NCC 533 2742368 LJT061 tRNA LJT061 NC_005362.1 1679787 1679859 R tRNA-Phe complement(1679787..1679859) Lactobacillus johnsonii NCC 533 2743717 LJT062 tRNA LJT062 NC_005362.1 1679864 1679936 R tRNA-Asp complement(1679864..1679936) Lactobacillus johnsonii NCC 533 2743656 LJT063 tRNA LJT063 NC_005362.1 1679940 1680013 R tRNA-Met complement(1679940..1680013) Lactobacillus johnsonii NCC 533 2743636 LJT064 tRNA LJT064 NC_005362.1 1680045 1680118 R tRNA-Met complement(1680045..1680118) Lactobacillus johnsonii NCC 533 2743494 LJT065 tRNA LJT065 NC_005362.1 1680132 1680205 R tRNA-Met complement(1680132..1680205) Lactobacillus johnsonii NCC 533 2742493 LJT066 tRNA LJT066 NC_005362.1 1680236 1680309 R tRNA-Pro complement(1680236..1680309) Lactobacillus johnsonii NCC 533 2742769 LJT067 tRNA LJT067 NC_005362.1 1680315 1680388 R tRNA-Arg complement(1680315..1680388) Lactobacillus johnsonii NCC 533 2743196 LJT068 tRNA LJT068 NC_005362.1 1680398 1680483 R tRNA-Leu complement(1680398..1680483) Lactobacillus johnsonii NCC 533 2743097 LJT069 tRNA LJT069 NC_005362.1 1680496 1680567 R tRNA-Gly complement(1680496..1680567) Lactobacillus johnsonii NCC 533 2743174 LJT070 tRNA LJT070 NC_005362.1 1680586 1680658 R tRNA-Thr complement(1680586..1680658) Lactobacillus johnsonii NCC 533 2742111 LJT071 tRNA LJT071 NC_005362.1 1680660 1680744 R tRNA-Leu complement(1680660..1680744) Lactobacillus johnsonii NCC 533 2742039 LJT072 tRNA LJT072 NC_005362.1 1680765 1680837 R tRNA-Lys complement(1680765..1680837) Lactobacillus johnsonii NCC 533 2742089 LJT073 tRNA LJT073 NC_005362.1 1680840 1680912 R tRNA-Val complement(1680840..1680912) Lactobacillus johnsonii NCC 533 2742043 LJT074 tRNA LJT074 NC_005362.1 1879252 1879324 R tRNA-Asn complement(1879252..1879324) Lactobacillus johnsonii NCC 533 2742139 LJT075 tRNA LJT075 NC_005362.1 1882545 1882617 R tRNA-Ala complement(1882545..1882617) Lactobacillus johnsonii NCC 533 2743719 LJT076 tRNA LJT076 NC_005362.1 1882653 1882726 R tRNA-Ile complement(1882653..1882726) Lactobacillus johnsonii NCC 533 2743699 LJT077 tRNA LJT077 NC_005362.1 1884764 1884839 R tRNA-Asn complement(1884764..1884839) Lactobacillus johnsonii NCC 533 2742437 LJT078 tRNA LJT078 NC_005362.1 1888060 1888132 R tRNA-Ala complement(1888060..1888132) Lactobacillus johnsonii NCC 533 2742655 LJT079 tRNA LJT079 NC_005362.1 1888168 1888241 R tRNA-Ile complement(1888168..1888241) Lactobacillus johnsonii NCC 533 2743443 LJR007 rRNA LJR007 NC_005362.1 558550 560200 D 16S ribosomal RNA 558550..560200 Lactobacillus johnsonii NCC 533 2742775 LJR013 rRNA LJR013 NC_005362.1 560300 563350 D 23S ribosomal RNA 560300..563350 Lactobacillus johnsonii NCC 533 2742805 LJR002 rRNA LJR002 NC_005362.1 563337 563453 D 5S ribosomal RNA 563337..563453 Lactobacillus johnsonii NCC 533 2742901 LJR003 rRNA LJR003 NC_005362.1 1659801 1659917 R 5S ribosomal RNA complement(1659801..1659917) Lactobacillus johnsonii NCC 533 2742044 LJR015 rRNA LJR015 NC_005362.1 1659904 1662954 R 23S ribosomal RNA complement(1659904..1662954) Lactobacillus johnsonii NCC 533 2742421 LJR008 rRNA LJR008 NC_005362.1 1663054 1664704 R 16S ribosomal RNA complement(1663054..1664704) Lactobacillus johnsonii NCC 533 2742409 LJR001 rRNA LJR001 NC_005362.1 1666468 1666584 R 5S ribosomal RNA complement(1666468..1666584) Lactobacillus johnsonii NCC 533 2742695 LJR014 rRNA LJR014 NC_005362.1 1666571 1669621 R 23S ribosomal RNA complement(1666571..1669621) Lactobacillus johnsonii NCC 533 2742317 LJR009 rRNA LJR009 NC_005362.1 1669721 1671371 R 16S ribosomal RNA complement(1669721..1671371) Lactobacillus johnsonii NCC 533 2743421 LJR004 rRNA LJR004 NC_005362.1 1680917 1681033 R 5S ribosomal RNA complement(1680917..1681033) Lactobacillus johnsonii NCC 533 2742042 LJR016 rRNA LJR016 NC_005362.1 1681020 1684070 R 23S ribosomal RNA complement(1681020..1684070) Lactobacillus johnsonii NCC 533 2742526 LJR010 rRNA LJR010 NC_005362.1 1684170 1685820 R 16S ribosomal RNA complement(1684170..1685820) Lactobacillus johnsonii NCC 533 2741974 LJR005 rRNA LJR005 NC_005362.1 1879337 1879453 R 5S ribosomal RNA complement(1879337..1879453) Lactobacillus johnsonii NCC 533 2742259 LJR017 rRNA LJR017 NC_005362.1 1879440 1882488 R 23S ribosomal RNA complement(1879440..1882488) Lactobacillus johnsonii NCC 533 2741891 LJR011 rRNA LJR011 NC_005362.1 1882821 1884471 R 16S ribosomal RNA complement(1882821..1884471) Lactobacillus johnsonii NCC 533 2743709 LJR006 rRNA LJR006 NC_005362.1 1884852 1884968 R 5S ribosomal RNA complement(1884852..1884968) Lactobacillus johnsonii NCC 533 2743630 LJR018 rRNA LJR018 NC_005362.1 1884955 1888003 R 23S ribosomal RNA complement(1884955..1888003) Lactobacillus johnsonii NCC 533 2742476 LJR012 rRNA LJR012 NC_005362.1 1888336 1889986 R 16S ribosomal RNA complement(1888336..1889986) Lactobacillus johnsonii NCC 533 2741934