-- dump date 20140619_124325 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 557436000001 SEQ_END SEQ_END NC_009513.1 1999618 1999618 DR NC_009513.1; contig end 1999618..1999618 Lactobacillus reuteri DSM 20016 YP_001270614.1 CDS dnaA NC_009513.1 381 1703 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 381..1703 Lactobacillus reuteri DSM 20016 5188277 YP_001270615.1 CDS Lreu_0002 NC_009513.1 1879 3021 D TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1879..3021 Lactobacillus reuteri DSM 20016 5189553 YP_001270616.1 CDS Lreu_0003 NC_009513.1 3268 3489 D TIGRFAM: S4 region, YaaA; S4 region, YaaA 3268..3489 Lactobacillus reuteri DSM 20016 5190076 YP_001270617.1 CDS recF NC_009513.1 3498 4622 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3498..4622 Lactobacillus reuteri DSM 20016 5188848 YP_001270618.1 CDS Lreu_0005 NC_009513.1 4619 6568 D TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 4619..6568 Lactobacillus reuteri DSM 20016 5188813 YP_001270619.1 CDS Lreu_0006 NC_009513.1 6611 9115 D TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; DNA gyrase subunit A 6611..9115 Lactobacillus reuteri DSM 20016 5189221 YP_001270620.1 CDS rpsF NC_009513.1 9318 9614 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 9318..9614 Lactobacillus reuteri DSM 20016 5188160 YP_001270621.1 CDS Lreu_0008 NC_009513.1 9652 10215 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding, OB-fold, tRNA/helicase-type; single-strand binding protein 9652..10215 Lactobacillus reuteri DSM 20016 5188894 YP_001270622.1 CDS rpsR NC_009513.1 10249 10485 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 10249..10485 Lactobacillus reuteri DSM 20016 5188535 YP_001270623.1 CDS Lreu_0010 NC_009513.1 10702 12720 D PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; phosphoesterase domain-containing protein 10702..12720 Lactobacillus reuteri DSM 20016 5189074 YP_001270624.1 CDS rplI NC_009513.1 12726 13178 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 12726..13178 Lactobacillus reuteri DSM 20016 5189247 YP_001270625.1 CDS Lreu_0012 NC_009513.1 13212 14603 D TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; primary replicative DNA helicase 13212..14603 Lactobacillus reuteri DSM 20016 5188304 YP_001270626.1 CDS Lreu_0013 NC_009513.1 14725 15927 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 14725..15927 Lactobacillus reuteri DSM 20016 5189914 YP_001270627.1 CDS Lreu_0014 NC_009513.1 15940 16266 D hypothetical protein 15940..16266 Lactobacillus reuteri DSM 20016 5190171 YP_001270628.1 CDS Lreu_0015 NC_009513.1 16371 17249 D PFAM: protein of unknown function DUF344; polyphosphate:AMP phosphotransferase 16371..17249 Lactobacillus reuteri DSM 20016 5188175 YP_001270629.1 CDS Lreu_0016 NC_009513.1 17279 17836 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(17279..17836) Lactobacillus reuteri DSM 20016 5188701 YP_001270630.1 CDS Lreu_0017 NC_009513.1 18438 18872 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 18438..18872 Lactobacillus reuteri DSM 20016 5189592 YP_001270631.1 CDS Lreu_0018 NC_009513.1 18960 20681 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 18960..20681 Lactobacillus reuteri DSM 20016 5189516 YP_001270632.1 CDS Lreu_0019 NC_009513.1 21025 21732 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 21025..21732 Lactobacillus reuteri DSM 20016 5189474 YP_001270633.1 CDS Lreu_0020 NC_009513.1 21746 23611 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 21746..23611 Lactobacillus reuteri DSM 20016 5188747 YP_001270634.1 CDS Lreu_0021 NC_009513.1 23589 24884 D PFAM: YycH family protein; hypothetical protein 23589..24884 Lactobacillus reuteri DSM 20016 5189922 YP_001270635.1 CDS Lreu_0022 NC_009513.1 24897 25739 D hypothetical protein 24897..25739 Lactobacillus reuteri DSM 20016 5190059 YP_001270636.1 CDS Lreu_0023 NC_009513.1 25757 26563 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 25757..26563 Lactobacillus reuteri DSM 20016 5188768 YP_001270637.1 CDS Lreu_0024 NC_009513.1 26665 27939 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; peptidase S1 and S6, chymotrypsin/Hap 26665..27939 Lactobacillus reuteri DSM 20016 5188795 YP_001270638.1 CDS Lreu_0025 NC_009513.1 28168 28665 D PFAM: phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 28168..28665 Lactobacillus reuteri DSM 20016 5189766 YP_001270639.1 CDS Lreu_0026 NC_009513.1 28974 29960 D PFAM: protein of unknown function DUF534; hypothetical protein 28974..29960 Lactobacillus reuteri DSM 20016 5189494 YP_001270640.1 CDS Lreu_0027 NC_009513.1 30429 30908 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 30429..30908 Lactobacillus reuteri DSM 20016 5189152 YP_001270641.1 CDS Lreu_0028 NC_009513.1 31051 31269 D hypothetical protein 31051..31269 Lactobacillus reuteri DSM 20016 5188898 YP_001270642.1 CDS Lreu_0029 NC_009513.1 31343 31879 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 31343..31879 Lactobacillus reuteri DSM 20016 5188794 YP_001270643.1 CDS Lreu_0030 NC_009513.1 32098 33270 D PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 32098..33270 Lactobacillus reuteri DSM 20016 5188789 YP_001270644.1 CDS Lreu_0031 NC_009513.1 33514 34377 D PFAM: sugar transport family protein; sugar transport family protein 33514..34377 Lactobacillus reuteri DSM 20016 5188841 YP_001270645.1 CDS Lreu_0032 NC_009513.1 34492 35268 R hypothetical protein complement(34492..35268) Lactobacillus reuteri DSM 20016 5188860 YP_001270646.1 CDS Lreu_0033 NC_009513.1 35270 36082 R PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(35270..36082) Lactobacillus reuteri DSM 20016 5189862 YP_001270647.1 CDS Lreu_0034 NC_009513.1 36383 37756 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 36383..37756 Lactobacillus reuteri DSM 20016 5188726 YP_001270648.1 CDS Lreu_0035 NC_009513.1 37932 39014 D TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 37932..39014 Lactobacillus reuteri DSM 20016 5189491 YP_001270649.1 CDS Lreu_0036 NC_009513.1 39016 39714 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 39016..39714 Lactobacillus reuteri DSM 20016 5188824 YP_001270650.1 CDS Lreu_0037 NC_009513.1 39701 40936 D PFAM: protein of unknown function DUF214; hypothetical protein 39701..40936 Lactobacillus reuteri DSM 20016 5188791 YP_001270651.1 CDS Lreu_0038 NC_009513.1 41186 41590 D hypothetical protein 41186..41590 Lactobacillus reuteri DSM 20016 5189370 YP_001270652.1 CDS Lreu_0039 NC_009513.1 41600 41737 D hypothetical protein 41600..41737 Lactobacillus reuteri DSM 20016 5189506 YP_001270653.1 CDS Lreu_0040 NC_009513.1 41926 43320 D hypothetical protein 41926..43320 Lactobacillus reuteri DSM 20016 5188728 YP_001270654.1 CDS Lreu_0041 NC_009513.1 43610 44086 D hypothetical protein 43610..44086 Lactobacillus reuteri DSM 20016 5188751 YP_001270655.1 CDS Lreu_0042 NC_009513.1 44169 44597 R PFAM: OsmC family protein; OsmC family protein complement(44169..44597) Lactobacillus reuteri DSM 20016 5188866 YP_001270656.1 CDS Lreu_0043 NC_009513.1 44665 45660 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(44665..45660) Lactobacillus reuteri DSM 20016 5189684 YP_001270657.1 CDS Lreu_0044 NC_009513.1 45662 46849 R PFAM: aminotransferase, class I and II; aromatic amino acid aminotransferase complement(45662..46849) Lactobacillus reuteri DSM 20016 5189670 YP_001270658.1 CDS Lreu_0045 NC_009513.1 47696 49933 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 47696..49933 Lactobacillus reuteri DSM 20016 5189536 YP_001270659.1 CDS Lreu_0046 NC_009513.1 50822 53677 D hypothetical protein 50822..53677 Lactobacillus reuteri DSM 20016 5188770 YP_001270660.1 CDS Lreu_0047 NC_009513.1 53759 54343 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(53759..54343) Lactobacillus reuteri DSM 20016 5189867 YP_001270661.1 CDS Lreu_0048 NC_009513.1 54483 55946 D PFAM: phospholipase D/Transphosphatidylase; cardiolipin synthetase 2 54483..55946 Lactobacillus reuteri DSM 20016 5189046 YP_001270662.1 CDS Lreu_0049 NC_009513.1 56075 59857 D DNA helicase/exodeoxyribonuclease V subunit B 56075..59857 Lactobacillus reuteri DSM 20016 5189386 YP_001270663.1 CDS Lreu_0050 NC_009513.1 59857 64035 D TIGRFAM: Recombination helicase AddA; PFAM: UvrD/REP helicase; recombination helicase AddA 59857..64035 Lactobacillus reuteri DSM 20016 5190144 YP_001270664.1 CDS Lreu_0051 NC_009513.1 64036 64971 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 64036..64971 Lactobacillus reuteri DSM 20016 5189904 YP_001270665.1 CDS Lreu_0052 NC_009513.1 65035 66213 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 65035..66213 Lactobacillus reuteri DSM 20016 5189875 YP_001270666.1 CDS Lreu_0053 NC_009513.1 66525 67874 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 66525..67874 Lactobacillus reuteri DSM 20016 5189003 YP_001270667.1 CDS Lreu_0054 NC_009513.1 67963 70215 D PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; maltose phosphorylase 67963..70215 Lactobacillus reuteri DSM 20016 5189672 YP_001270668.1 CDS Lreu_0055 NC_009513.1 70234 70896 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; beta-phosphoglucomutase 70234..70896 Lactobacillus reuteri DSM 20016 5189930 YP_001270669.1 CDS Lreu_0056 NC_009513.1 70973 71455 D hypothetical protein 70973..71455 Lactobacillus reuteri DSM 20016 5189439 YP_001270670.1 CDS Lreu_0058 NC_009513.1 72166 72831 D PFAM: response regulator receiver; two component transcriptional regulator 72166..72831 Lactobacillus reuteri DSM 20016 5188172 YP_001270671.1 CDS Lreu_0059 NC_009513.1 72843 74090 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 72843..74090 Lactobacillus reuteri DSM 20016 5189811 YP_001270672.1 CDS Lreu_0060 NC_009513.1 74093 75274 D hypothetical protein 74093..75274 Lactobacillus reuteri DSM 20016 5188771 YP_001270673.1 CDS Lreu_0061 NC_009513.1 75426 76766 D PFAM: glutamate--cysteine ligase; glutamate--cysteine ligase 75426..76766 Lactobacillus reuteri DSM 20016 5189547 YP_001270674.1 CDS Lreu_0062 NC_009513.1 77012 77470 D PFAM: transposase IS200-family protein; transposase IS200-family protein 77012..77470 Lactobacillus reuteri DSM 20016 5189671 YP_001270675.1 CDS Lreu_0063 NC_009513.1 77669 78397 R PFAM: glutamine amidotransferase class-I; peptidase C26; peptidase C26 complement(77669..78397) Lactobacillus reuteri DSM 20016 5190148 YP_001270676.1 CDS Lreu_0064 NC_009513.1 78516 79382 D PFAM: aldo/keto reductase; 2,5-didehydrogluconate reductase 78516..79382 Lactobacillus reuteri DSM 20016 5189571 YP_001270677.1 CDS Lreu_0065 NC_009513.1 79521 81308 D PFAM: glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 79521..81308 Lactobacillus reuteri DSM 20016 5189771 YP_001270678.1 CDS Lreu_0066 NC_009513.1 81361 81858 R hypothetical protein complement(81361..81858) Lactobacillus reuteri DSM 20016 5189484 YP_001270679.1 CDS Lreu_0067 NC_009513.1 82127 83476 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 82127..83476 Lactobacillus reuteri DSM 20016 5189747 YP_001270680.1 CDS Lreu_0068 NC_009513.1 83536 84510 R TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase complement(83536..84510) Lactobacillus reuteri DSM 20016 5190170 YP_001270681.1 CDS Lreu_0069 NC_009513.1 84706 86004 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 84706..86004 Lactobacillus reuteri DSM 20016 5188905 YP_001270682.1 CDS Lreu_0070 NC_009513.1 86115 86900 D hypothetical protein 86115..86900 Lactobacillus reuteri DSM 20016 5189469 YP_001270683.1 CDS Lreu_0071 NC_009513.1 87063 87602 D PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 87063..87602 Lactobacillus reuteri DSM 20016 5189653 YP_001270684.1 CDS Lreu_0072 NC_009513.1 87721 88107 R hypothetical protein complement(87721..88107) Lactobacillus reuteri DSM 20016 5189593 YP_001270685.1 CDS Lreu_0073 NC_009513.1 88356 89612 R TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; IS605 family transposase OrfB complement(88356..89612) Lactobacillus reuteri DSM 20016 5188995 YP_001270686.1 CDS Lreu_0074 NC_009513.1 89687 90142 D PFAM: transposase IS200-family protein; transposase IS200-family protein 89687..90142 Lactobacillus reuteri DSM 20016 5189818 YP_001270687.1 CDS Lreu_0075 NC_009513.1 90267 91001 D PFAM: glutamine amidotransferase class-I; peptidase C26; peptidase C26 90267..91001 Lactobacillus reuteri DSM 20016 5189479 YP_001270688.1 CDS Lreu_0076 NC_009513.1 91007 92401 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 91007..92401 Lactobacillus reuteri DSM 20016 5189560 YP_001270689.1 CDS Lreu_0077 NC_009513.1 92873 93070 D hypothetical protein 92873..93070 Lactobacillus reuteri DSM 20016 5189820 YP_001270690.1 CDS Lreu_0078 NC_009513.1 93058 93513 D hypothetical protein 93058..93513 Lactobacillus reuteri DSM 20016 5189442 YP_001270691.1 CDS Lreu_0079 NC_009513.1 93578 94021 R hypothetical protein complement(93578..94021) Lactobacillus reuteri DSM 20016 5189848 YP_001270692.1 CDS Lreu_0080 NC_009513.1 94121 95662 D PFAM: glycosyl transferase, group 1; Protein of unknown function DUF1975; hypothetical protein 94121..95662 Lactobacillus reuteri DSM 20016 5188758 YP_001270693.1 CDS Lreu_0081 NC_009513.1 95664 97166 D PFAM: glycosyl transferase, group 1; Protein of unknown function DUF1975; hypothetical protein 95664..97166 Lactobacillus reuteri DSM 20016 5189504 YP_001270694.1 CDS Lreu_0082 NC_009513.1 97278 99095 D hypothetical protein 97278..99095 Lactobacillus reuteri DSM 20016 5188981 YP_001270695.1 CDS Lreu_0083 NC_009513.1 99279 100961 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; alpha amylase 99279..100961 Lactobacillus reuteri DSM 20016 5189544 YP_001270696.1 CDS Lreu_0084 NC_009513.1 100979 102364 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 100979..102364 Lactobacillus reuteri DSM 20016 5188838 YP_001270697.1 CDS carB NC_009513.1 102442 105612 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(102442..105612) Lactobacillus reuteri DSM 20016 5189817 YP_001270698.1 CDS Lreu_0086 NC_009513.1 105605 106693 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(105605..106693) Lactobacillus reuteri DSM 20016 5189663 YP_001270699.1 CDS Lreu_0087 NC_009513.1 107075 108448 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(107075..108448) Lactobacillus reuteri DSM 20016 5188832 YP_001270700.1 CDS Lreu_0088 NC_009513.1 108608 109618 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator complement(108608..109618) Lactobacillus reuteri DSM 20016 5189732 YP_001270701.1 CDS Lreu_0089 NC_009513.1 109757 111163 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; RNA methyltransferase complement(109757..111163) Lactobacillus reuteri DSM 20016 5188807 YP_001270702.1 CDS Lreu_0090 NC_009513.1 111380 111991 D PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 111380..111991 Lactobacillus reuteri DSM 20016 5189486 YP_001270703.1 CDS Lreu_0091 NC_009513.1 111991 113241 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 111991..113241 Lactobacillus reuteri DSM 20016 5189723 YP_001270704.1 CDS Lreu_0092 NC_009513.1 113244 114170 D PFAM: ApbE family lipoprotein; ApbE family lipoprotein 113244..114170 Lactobacillus reuteri DSM 20016 5189788 YP_001270705.1 CDS Lreu_0093 NC_009513.1 114668 116050 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase 114668..116050 Lactobacillus reuteri DSM 20016 5189795 YP_001270706.1 CDS Lreu_0097 NC_009513.1 121729 123036 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 121729..123036 Lactobacillus reuteri DSM 20016 5190163 YP_001270707.1 CDS Lreu_0098 NC_009513.1 123305 124768 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; polar amino acid ABC transporter inner membrane protein 123305..124768 Lactobacillus reuteri DSM 20016 5189110 YP_001270708.1 CDS Lreu_0099 NC_009513.1 124770 125513 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 124770..125513 Lactobacillus reuteri DSM 20016 5188776 YP_001270709.1 CDS Lreu_0100 NC_009513.1 125817 127166 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 125817..127166 Lactobacillus reuteri DSM 20016 5189929 YP_001270710.1 CDS Lreu_0101 NC_009513.1 128117 129328 D PFAM: Na+ dependent nucleoside transporter; Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter 128117..129328 Lactobacillus reuteri DSM 20016 5189733 YP_001270711.1 CDS Lreu_0102 NC_009513.1 129409 130317 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 129409..130317 Lactobacillus reuteri DSM 20016 5189743 YP_001270712.1 CDS Lreu_0103 NC_009513.1 130420 131304 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 130420..131304 Lactobacillus reuteri DSM 20016 5189951 YP_001270713.1 CDS gidB NC_009513.1 131482 132207 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 131482..132207 Lactobacillus reuteri DSM 20016 5189774 YP_001270714.1 CDS Lreu_0105 NC_009513.1 132225 133193 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; effector of nucleoid occlusion Noc 132225..133193 Lactobacillus reuteri DSM 20016 5189570 YP_001270715.1 CDS Lreu_0106 NC_009513.1 133206 133976 D PFAM: Cobyrinic acid a,c-diamide synthase; chromosome segregation ATPase 133206..133976 Lactobacillus reuteri DSM 20016 5189669 YP_001270716.1 CDS Lreu_0107 NC_009513.1 133963 134847 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; chromosome segregation DNA-binding protein 133963..134847 Lactobacillus reuteri DSM 20016 5189366 YP_001270717.1 CDS Lreu_0108 NC_009513.1 134861 135058 D PFAM: protein of unknown function DUF951; hypothetical protein 134861..135058 Lactobacillus reuteri DSM 20016 5189423 YP_001270718.1 CDS ychF NC_009513.1 135142 136239 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 135142..136239 Lactobacillus reuteri DSM 20016 5189662 YP_001270719.1 CDS Lreu_0110 NC_009513.1 136272 137042 D PFAM: membrane protein of unknown function UCP033111; hypothetical protein 136272..137042 Lactobacillus reuteri DSM 20016 5189911 YP_001270720.1 CDS Lreu_0111 NC_009513.1 137255 137929 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 137255..137929 Lactobacillus reuteri DSM 20016 5189680 YP_001270721.1 CDS Lreu_0112 NC_009513.1 137982 139175 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 137982..139175 Lactobacillus reuteri DSM 20016 5189755 YP_001270722.1 CDS Lreu_0113 NC_009513.1 139204 140502 D TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase, family 3; Pyrimidine nucleoside phosphorylase, C-terminal domain; thymidine phosphorylase 139204..140502 Lactobacillus reuteri DSM 20016 5188745 YP_001270723.1 CDS Lreu_0114 NC_009513.1 140523 141233 D TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase, family 1; purine nucleoside phosphorylase 140523..141233 Lactobacillus reuteri DSM 20016 5189752 YP_001270724.1 CDS Lreu_0115 NC_009513.1 141343 142275 D PFAM: sugar-binding domain protein; DeoR family transcriptional regulator 141343..142275 Lactobacillus reuteri DSM 20016 5189782 YP_001270725.1 CDS Lreu_0116 NC_009513.1 142359 143501 D PFAM: IMP dehydrogenase/GMP reductase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; inosine-5'-monophosphate dehydrogenase 142359..143501 Lactobacillus reuteri DSM 20016 5189780 YP_001270726.1 CDS Lreu_0117 NC_009513.1 143682 144371 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 143682..144371 Lactobacillus reuteri DSM 20016 5189909 YP_001270727.1 CDS Lreu_0118 NC_009513.1 144403 145548 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 144403..145548 Lactobacillus reuteri DSM 20016 5189692 YP_001270728.1 CDS Lreu_0119 NC_009513.1 145684 146592 D PFAM: AzlC family protein; AzlC family protein 145684..146592 Lactobacillus reuteri DSM 20016 5189590 YP_001270729.1 CDS Lreu_0120 NC_009513.1 146595 146939 D PFAM: branched-chain amino acid transport; branched-chain amino acid transporter 146595..146939 Lactobacillus reuteri DSM 20016 5188923 YP_001270730.1 CDS Lreu_0121 NC_009513.1 147035 147766 D transcriptional regulator-like protein 147035..147766 Lactobacillus reuteri DSM 20016 5189460 YP_001270731.1 CDS Lreu_0122 NC_009513.1 147741 147908 D hypothetical protein 147741..147908 Lactobacillus reuteri DSM 20016 5189459 YP_001270732.1 CDS pyrB NC_009513.1 148253 149182 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 148253..149182 Lactobacillus reuteri DSM 20016 5188969 YP_001270733.1 CDS Lreu_0124 NC_009513.1 149196 150488 D TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase 149196..150488 Lactobacillus reuteri DSM 20016 5189517 YP_001270734.1 CDS Lreu_0125 NC_009513.1 150488 151414 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 150488..151414 Lactobacillus reuteri DSM 20016 5188778 YP_001270735.1 CDS Lreu_0126 NC_009513.1 151411 152142 D TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine-5'-phosphate decarboxylase 151411..152142 Lactobacillus reuteri DSM 20016 5189945 YP_001270736.1 CDS Lreu_0127 NC_009513.1 152139 152780 D TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 152139..152780 Lactobacillus reuteri DSM 20016 5189454 YP_001270737.1 CDS Lreu_0128 NC_009513.1 152852 153493 R phosphatase/phosphohexomutase-like protein complement(152852..153493) Lactobacillus reuteri DSM 20016 5188864 YP_001270738.1 CDS Lreu_0129 NC_009513.1 153636 154847 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase complement(153636..154847) Lactobacillus reuteri DSM 20016 5189652 YP_001270739.1 CDS Lreu_0130 NC_009513.1 154983 156008 D PFAM: protein of unknown function UPF0118; hypothetical protein 154983..156008 Lactobacillus reuteri DSM 20016 5189578 YP_001270740.1 CDS Lreu_0131 NC_009513.1 156185 157846 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 156185..157846 Lactobacillus reuteri DSM 20016 5189700 YP_001270741.1 CDS Lreu_0132 NC_009513.1 158040 159719 D catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 158040..159719 Lactobacillus reuteri DSM 20016 5189674 YP_001270742.1 CDS Lreu_0133 NC_009513.1 159736 160452 D PFAM: alpha-acetolactate decarboxylase; acetolactate decarboxylase 159736..160452 Lactobacillus reuteri DSM 20016 5188730 YP_001270743.1 CDS Lreu_0134 NC_009513.1 160637 161122 D TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 160637..161122 Lactobacillus reuteri DSM 20016 5189258 YP_001270744.1 CDS Lreu_0135 NC_009513.1 161178 162239 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 161178..162239 Lactobacillus reuteri DSM 20016 5189508 YP_001270745.1 CDS Lreu_0136 NC_009513.1 162311 163606 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 162311..163606 Lactobacillus reuteri DSM 20016 5189894 YP_001270746.1 CDS Lreu_0137 NC_009513.1 163830 164549 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 163830..164549 Lactobacillus reuteri DSM 20016 5190149 YP_001270747.1 CDS Lreu_0138 NC_009513.1 164550 164798 D TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; phosphoribosylformylglycinamidine synthase subunit PurS 164550..164798 Lactobacillus reuteri DSM 20016 5189984 YP_001270748.1 CDS Lreu_0139 NC_009513.1 164799 165479 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 164799..165479 Lactobacillus reuteri DSM 20016 5188980 YP_001270749.1 CDS Lreu_0140 NC_009513.1 165483 167711 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 165483..167711 Lactobacillus reuteri DSM 20016 5189635 YP_001270750.1 CDS Lreu_0141 NC_009513.1 167687 169141 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 167687..169141 Lactobacillus reuteri DSM 20016 5189588 YP_001270751.1 CDS Lreu_0142 NC_009513.1 169146 170183 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 169146..170183 Lactobacillus reuteri DSM 20016 5190126 YP_001270752.1 CDS Lreu_0143 NC_009513.1 170193 170765 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase 170193..170765 Lactobacillus reuteri DSM 20016 5189617 YP_001270753.1 CDS purH NC_009513.1 170769 172307 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 170769..172307 Lactobacillus reuteri DSM 20016 5189507 YP_001270754.1 CDS Lreu_0145 NC_009513.1 172323 173582 D TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine--glycine ligase 172323..173582 Lactobacillus reuteri DSM 20016 5189575 YP_001270755.1 CDS gpmA NC_009513.1 173678 174364 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 173678..174364 Lactobacillus reuteri DSM 20016 5189190 YP_001270756.1 CDS Lreu_0147 NC_009513.1 174532 175581 D hypothetical protein 174532..175581 Lactobacillus reuteri DSM 20016 5188973 YP_001270757.1 CDS Lreu_0148 NC_009513.1 175934 177184 D TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 175934..177184 Lactobacillus reuteri DSM 20016 5188788 YP_001270758.1 CDS Lreu_0149 NC_009513.1 182964 183152 D hypothetical protein 182964..183152 Lactobacillus reuteri DSM 20016 5189639 YP_001270759.1 CDS Lreu_0150 NC_009513.1 183142 183498 D PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 183142..183498 Lactobacillus reuteri DSM 20016 5189987 YP_001270760.1 CDS Lreu_0151 NC_009513.1 183565 185094 D PFAM: transposase IS66; transposase IS66 183565..185094 Lactobacillus reuteri DSM 20016 5189724 YP_001270761.1 CDS Lreu_0152 NC_009513.1 185377 185934 D transposase 185377..185934 Lactobacillus reuteri DSM 20016 5189521 YP_001270762.1 CDS Lreu_0153 NC_009513.1 186527 187495 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(186527..187495) Lactobacillus reuteri DSM 20016 5189011 YP_001270763.1 CDS Lreu_0154 NC_009513.1 187695 188411 D PFAM: NUDIX hydrolase; NUDIX hydrolase 187695..188411 Lactobacillus reuteri DSM 20016 5190003 YP_001270764.1 CDS Lreu_0155 NC_009513.1 188513 189946 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 188513..189946 Lactobacillus reuteri DSM 20016 5189934 YP_001270765.1 CDS Lreu_0156 NC_009513.1 189959 190507 D PFAM: isochorismatase hydrolase; isochorismatase hydrolase 189959..190507 Lactobacillus reuteri DSM 20016 5190154 YP_001270766.1 CDS Lreu_0157 NC_009513.1 190867 191952 D PFAM: ADP-ribosylation/Crystallin J1; ADP-ribosylation/crystallin J1 190867..191952 Lactobacillus reuteri DSM 20016 5189391 YP_001270767.1 CDS Lreu_0158 NC_009513.1 191972 193324 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 191972..193324 Lactobacillus reuteri DSM 20016 5189552 YP_001270768.1 CDS Lreu_0159 NC_009513.1 193330 194217 D PFAM: PfkB domain protein; ribokinase-like domain-containing protein 193330..194217 Lactobacillus reuteri DSM 20016 5190075 YP_001270769.1 CDS Lreu_0160 NC_009513.1 194345 194590 D PFAM: helix-turn-helix, HxlR type; HxlR family transcriptional regulator 194345..194590 Lactobacillus reuteri DSM 20016 5189668 YP_001270770.1 CDS Lreu_0161 NC_009513.1 195009 196331 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 195009..196331 Lactobacillus reuteri DSM 20016 5189712 YP_001270771.1 CDS Lreu_0162 NC_009513.1 196490 197230 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(196490..197230) Lactobacillus reuteri DSM 20016 5188936 YP_001270772.1 CDS Lreu_0163 NC_009513.1 197338 197565 D hypothetical protein 197338..197565 Lactobacillus reuteri DSM 20016 5189902 YP_001270773.1 CDS Lreu_0164 NC_009513.1 197644 198294 D PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 197644..198294 Lactobacillus reuteri DSM 20016 5189877 YP_001270774.1 CDS Lreu_0165 NC_009513.1 198360 198593 R PFAM: cytochrome b5; cytochrome b5 complement(198360..198593) Lactobacillus reuteri DSM 20016 5189754 YP_001270775.1 CDS Lreu_0166 NC_009513.1 198736 200154 R PFAM: Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(198736..200154) Lactobacillus reuteri DSM 20016 5188592 YP_001270776.1 CDS Lreu_0169 NC_009513.1 202132 202674 R PFAM: protein of unknown function DUF1234; hypothetical protein complement(202132..202674) Lactobacillus reuteri DSM 20016 5188802 YP_001270777.1 CDS Lreu_0170 NC_009513.1 202686 203087 R phosphate-starvation-inducible protein PsiE complement(202686..203087) Lactobacillus reuteri DSM 20016 5189013 YP_001270778.1 CDS Lreu_0171 NC_009513.1 203219 203989 D PFAM: triosephosphate isomerase; triosephosphate isomerase 203219..203989 Lactobacillus reuteri DSM 20016 5189396 YP_001270779.1 CDS Lreu_0172 NC_009513.1 204267 205220 D PFAM: aldo/keto reductase; aldo/keto reductase 204267..205220 Lactobacillus reuteri DSM 20016 5189679 YP_001270780.1 CDS Lreu_0173 NC_009513.1 205220 205720 D SMART: phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 205220..205720 Lactobacillus reuteri DSM 20016 5189689 YP_001270781.1 CDS Lreu_0174 NC_009513.1 205741 208590 D PFAM: helicase domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; type III restriction protein, res subunit 205741..208590 Lactobacillus reuteri DSM 20016 5188580 YP_001270782.1 CDS Lreu_0175 NC_009513.1 208652 208939 D hypothetical protein 208652..208939 Lactobacillus reuteri DSM 20016 5188965 YP_001270783.1 CDS Lreu_0176 NC_009513.1 209066 210421 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation subunit complement(209066..210421) Lactobacillus reuteri DSM 20016 5189616 YP_001270784.1 CDS Lreu_0177 NC_009513.1 210708 211028 D hypothetical protein 210708..211028 Lactobacillus reuteri DSM 20016 5188948 YP_001270785.1 CDS Lreu_0178 NC_009513.1 211137 211841 D hypothetical protein 211137..211841 Lactobacillus reuteri DSM 20016 5188753 YP_001270786.1 CDS Lreu_0179 NC_009513.1 211917 212651 D PFAM: peptidase M10A and M12B, matrixin and adamalysin; peptidase M10A and M12B, matrixin and adamalysin 211917..212651 Lactobacillus reuteri DSM 20016 5188986 YP_001270787.1 CDS Lreu_0180 NC_009513.1 212835 214643 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase complement(212835..214643) Lactobacillus reuteri DSM 20016 5189010 YP_001270788.1 CDS Lreu_0181 NC_009513.1 214747 215934 D PFAM: metalloenzyme domain protein; Phosphopentomutase N-terminal domain protein; phosphopentomutase 214747..215934 Lactobacillus reuteri DSM 20016 5189915 YP_001270789.1 CDS Lreu_0182 NC_009513.1 216153 217007 R PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase complement(216153..217007) Lactobacillus reuteri DSM 20016 5188876 YP_001270790.1 CDS Lreu_0183 NC_009513.1 217010 217330 R PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator complement(217010..217330) Lactobacillus reuteri DSM 20016 5189397 YP_001270791.1 CDS Lreu_0184 NC_009513.1 217613 218512 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 217613..218512 Lactobacillus reuteri DSM 20016 5190128 YP_001270792.1 CDS Lreu_0185 NC_009513.1 218579 219244 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 218579..219244 Lactobacillus reuteri DSM 20016 5188727 YP_001270793.1 CDS Lreu_0186 NC_009513.1 219219 219989 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 219219..219989 Lactobacillus reuteri DSM 20016 5189830 YP_001270794.1 CDS Lreu_0187 NC_009513.1 219982 220620 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 219982..220620 Lactobacillus reuteri DSM 20016 5188987 YP_001270795.1 CDS Lreu_0188 NC_009513.1 220692 221120 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 220692..221120 Lactobacillus reuteri DSM 20016 5188731 YP_001270796.1 CDS Lreu_0189 NC_009513.1 221184 222521 R PFAM: Chloride channel, core; chloride channel protein complement(221184..222521) Lactobacillus reuteri DSM 20016 5189886 YP_001270797.1 CDS Lreu_0190 NC_009513.1 222868 224013 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(222868..224013) Lactobacillus reuteri DSM 20016 5189845 YP_001270798.1 CDS Lreu_0191 NC_009513.1 224032 224721 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(224032..224721) Lactobacillus reuteri DSM 20016 5188809 YP_001270799.1 CDS Lreu_0192 NC_009513.1 224714 225778 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(224714..225778) Lactobacillus reuteri DSM 20016 5189111 YP_001270800.1 CDS Lreu_0193 NC_009513.1 225791 226642 R PFAM: NLPA lipoprotein; NLPA lipoprotein complement(225791..226642) Lactobacillus reuteri DSM 20016 5189476 YP_001270801.1 CDS Lreu_0194 NC_009513.1 227163 228095 D PFAM: Lactate/malate dehydrogenase; lactate dehydrogenase 227163..228095 Lactobacillus reuteri DSM 20016 5189615 YP_001270802.1 CDS Lreu_0195 NC_009513.1 228242 229438 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 228242..229438 Lactobacillus reuteri DSM 20016 5189624 YP_001270803.1 CDS Lreu_0196 NC_009513.1 229520 229813 R PFAM: FMN-binding domain protein; FMN-binding domain-containing protein complement(229520..229813) Lactobacillus reuteri DSM 20016 5189694 YP_001270804.1 CDS Lreu_0197 NC_009513.1 229825 230466 R TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; DNA-(apurinic or apyrimidinic site) lyase / endonuclease III complement(229825..230466) Lactobacillus reuteri DSM 20016 5189480 YP_001270805.1 CDS Lreu_0198 NC_009513.1 230764 232236 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 230764..232236 Lactobacillus reuteri DSM 20016 5188836 YP_001270806.1 CDS Lreu_0199 NC_009513.1 232199 233560 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 232199..233560 Lactobacillus reuteri DSM 20016 5188558 YP_001270807.1 CDS Lreu_0200 NC_009513.1 233843 235012 D PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 233843..235012 Lactobacillus reuteri DSM 20016 5189610 YP_001270808.1 CDS Lreu_0201 NC_009513.1 235025 237343 D superfamily I DNA/RNA helicase-like protein 235025..237343 Lactobacillus reuteri DSM 20016 5188971 YP_001270809.1 CDS Lreu_0202 NC_009513.1 237431 237874 D PFAM: nucleoside diphosphate kinase; nucleoside diphosphate kinase 237431..237874 Lactobacillus reuteri DSM 20016 5188825 YP_001270810.1 CDS Lreu_0203 NC_009513.1 237926 238885 R PFAM: DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein complement(237926..238885) Lactobacillus reuteri DSM 20016 5188803 YP_001270811.1 CDS Lreu_0204 NC_009513.1 239163 240185 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 239163..240185 Lactobacillus reuteri DSM 20016 5189696 YP_001270812.1 CDS Lreu_0205 NC_009513.1 240332 241270 D PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 240332..241270 Lactobacillus reuteri DSM 20016 5189009 YP_001270813.1 CDS Lreu_0206 NC_009513.1 241263 242525 D TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; 3-hydroxy-3-methylglutaryl-coenzyme A reductase 241263..242525 Lactobacillus reuteri DSM 20016 5188737 YP_001270814.1 CDS Lreu_0207 NC_009513.1 242518 243477 D hypothetical protein 242518..243477 Lactobacillus reuteri DSM 20016 5189836 YP_001270815.1 CDS Lreu_0208 NC_009513.1 243483 244181 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 243483..244181 Lactobacillus reuteri DSM 20016 5188814 YP_001270816.1 CDS Lreu_0209 NC_009513.1 244630 245478 D PFAM: protein of unknown function DUF72; hypothetical protein 244630..245478 Lactobacillus reuteri DSM 20016 5189128 YP_001270817.1 CDS Lreu_0210 NC_009513.1 245556 247583 D TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); methionyl-tRNA synthetase 245556..247583 Lactobacillus reuteri DSM 20016 5188883 YP_001270818.1 CDS Lreu_0211 NC_009513.1 247585 248394 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 247585..248394 Lactobacillus reuteri DSM 20016 5188798 YP_001270819.1 CDS Lreu_0212 NC_009513.1 248391 248957 D TIGRFAM: primase/topoisomerase like protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; ribonuclease M5 248391..248957 Lactobacillus reuteri DSM 20016 5189573 YP_001270820.1 CDS ksgA NC_009513.1 248950 249843 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 248950..249843 Lactobacillus reuteri DSM 20016 5189260 YP_001270821.1 CDS Lreu_0214 NC_009513.1 249934 250176 D PFAM: protein of unknown function DUF1021; hypothetical protein 249934..250176 Lactobacillus reuteri DSM 20016 5188880 YP_001270822.1 CDS ipk NC_009513.1 250362 251213 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 250362..251213 Lactobacillus reuteri DSM 20016 5189027 YP_001270823.1 CDS Lreu_0216 NC_009513.1 251353 252264 D PFAM: periplasmic solute binding protein; periplasmic solute binding protein 251353..252264 Lactobacillus reuteri DSM 20016 5189421 YP_001270824.1 CDS Lreu_0217 NC_009513.1 252272 252943 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 252272..252943 Lactobacillus reuteri DSM 20016 5188773 YP_001270825.1 CDS Lreu_0218 NC_009513.1 252943 253740 D PFAM: ABC-3 protein; ABC-3 protein 252943..253740 Lactobacillus reuteri DSM 20016 5188804 YP_001270826.1 CDS Lreu_0219 NC_009513.1 253972 254817 D TIGRFAM: pur operon repressor; PFAM: phosphoribosyltransferase; purine repressor-like; pur operon repressor 253972..254817 Lactobacillus reuteri DSM 20016 5189000 YP_001270827.1 CDS glmU NC_009513.1 254821 256188 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 254821..256188 Lactobacillus reuteri DSM 20016 5189327 YP_001270828.1 CDS Lreu_0221 NC_009513.1 256263 257252 D TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 256263..257252 Lactobacillus reuteri DSM 20016 5189021 YP_001270829.1 CDS Lreu_0222 NC_009513.1 257428 258165 D hypothetical protein 257428..258165 Lactobacillus reuteri DSM 20016 5188861 YP_001270830.1 CDS Lreu_0223 NC_009513.1 258244 259065 R TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; cof family hydrolase complement(258244..259065) Lactobacillus reuteri DSM 20016 5188972 YP_001270831.1 CDS Lreu_0224 NC_009513.1 259065 260432 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(259065..260432) Lactobacillus reuteri DSM 20016 5189407 YP_001270832.1 CDS Lreu_0225 NC_009513.1 260434 261258 R PFAM: biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase complement(260434..261258) Lactobacillus reuteri DSM 20016 5188740 YP_001270833.1 CDS Lreu_0226 NC_009513.1 261522 261866 D PFAM: transposase IS200-family protein; transposase IS200-family protein 261522..261866 Lactobacillus reuteri DSM 20016 5188865 YP_001270834.1 CDS Lreu_0227 NC_009513.1 261866 263041 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; IS605 family transposase OrfB 261866..263041 Lactobacillus reuteri DSM 20016 5188974 YP_001270835.1 CDS Lreu_0228 NC_009513.1 263268 263666 D PFAM: Domain of unknown function DUF1934; hypothetical protein 263268..263666 Lactobacillus reuteri DSM 20016 5189676 YP_001270836.1 CDS Lreu_0229 NC_009513.1 263712 264269 D participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 263712..264269 Lactobacillus reuteri DSM 20016 5188766 YP_001270837.1 CDS pyrG NC_009513.1 264445 266049 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 264445..266049 Lactobacillus reuteri DSM 20016 5189630 YP_001270838.1 CDS Lreu_0231 NC_009513.1 266562 267944 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase 266562..267944 Lactobacillus reuteri DSM 20016 5190105 YP_001270839.1 CDS Lreu_0232 NC_009513.1 268228 269505 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 268228..269505 Lactobacillus reuteri DSM 20016 5188920 YP_001270840.1 CDS rpmE2 NC_009513.1 269598 269843 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 269598..269843 Lactobacillus reuteri DSM 20016 5189806 YP_001270841.1 CDS Lreu_0234 NC_009513.1 270005 271321 D PTS system cellobiose-specific transporter subunit IIC-like protein 270005..271321 Lactobacillus reuteri DSM 20016 5189441 YP_001270842.1 CDS Lreu_0235 NC_009513.1 271305 272195 D PFAM: hydrolase family protein; hydrolase family protein 271305..272195 Lactobacillus reuteri DSM 20016 5189925 YP_001270843.1 CDS Lreu_0236 NC_009513.1 272245 272949 D TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; sortase family protein 272245..272949 Lactobacillus reuteri DSM 20016 5188853 YP_001270844.1 CDS Lreu_0237 NC_009513.1 273350 274129 D PFAM: triosephosphate isomerase; triosephosphate isomerase 273350..274129 Lactobacillus reuteri DSM 20016 5188895 YP_001270845.1 CDS Lreu_0238 NC_009513.1 274141 275007 D TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase 274141..275007 Lactobacillus reuteri DSM 20016 5189860 YP_001270846.1 CDS Lreu_0239 NC_009513.1 275027 275683 D PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 275027..275683 Lactobacillus reuteri DSM 20016 5189659 YP_001270847.1 CDS Lreu_0240 NC_009513.1 275722 276186 R PFAM: low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase complement(275722..276186) Lactobacillus reuteri DSM 20016 5188749 YP_001270848.1 CDS Lreu_0241 NC_009513.1 276316 276885 D PFAM: LemA family protein; LemA family protein 276316..276885 Lactobacillus reuteri DSM 20016 5189675 YP_001270849.1 CDS Lreu_0242 NC_009513.1 276888 277784 D metalloprotease; heat shock protein HtpX 276888..277784 Lactobacillus reuteri DSM 20016 5189646 YP_001270850.1 CDS Lreu_0243 NC_009513.1 277938 279317 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 277938..279317 Lactobacillus reuteri DSM 20016 5189765 YP_001270851.1 CDS Lreu_0244 NC_009513.1 279389 280885 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 279389..280885 Lactobacillus reuteri DSM 20016 5189382 YP_001270852.1 CDS Lreu_0245 NC_009513.1 280966 281802 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(280966..281802) Lactobacillus reuteri DSM 20016 5189426 YP_001270853.1 CDS Lreu_0246 NC_009513.1 282268 283209 D PFAM: glutaminase; glutaminase 282268..283209 Lactobacillus reuteri DSM 20016 5189655 YP_001270854.1 CDS Lreu_0247 NC_009513.1 283355 283813 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(283355..283813) Lactobacillus reuteri DSM 20016 5189569 YP_001270855.1 CDS Lreu_0248 NC_009513.1 284469 285851 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase 284469..285851 Lactobacillus reuteri DSM 20016 5189565 YP_001270856.1 CDS Lreu_0249 NC_009513.1 285935 287224 R PFAM: DltD, C-terminal domain protein; DltD, N-terminal domain protein; DltD, central domain protein; DltD C-terminal domain-containing protein complement(285935..287224) Lactobacillus reuteri DSM 20016 5189537 YP_001270857.1 CDS Lreu_0250 NC_009513.1 287217 287456 R TIGRFAM: D-alanyl carrier protein; PFAM: phosphopantetheine-binding; D-alanyl carrier protein complement(287217..287456) Lactobacillus reuteri DSM 20016 5189389 YP_001270858.1 CDS Lreu_0251 NC_009513.1 287476 288693 R PFAM: membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase, MBOAT family protein complement(287476..288693) Lactobacillus reuteri DSM 20016 5189691 YP_001270859.1 CDS Lreu_0252 NC_009513.1 288693 290219 R TIGRFAM: amino acid adenylation domain; D-alanine-activating enzyme; PFAM: AMP-dependent synthetase and ligase; D-alanine-activating enzyme complement(288693..290219) Lactobacillus reuteri DSM 20016 5189188 YP_001270860.1 CDS Lreu_0253 NC_009513.1 290241 290381 R hypothetical protein complement(290241..290381) Lactobacillus reuteri DSM 20016 5189542 YP_001270861.1 CDS acpS NC_009513.1 290712 291074 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 290712..291074 Lactobacillus reuteri DSM 20016 5189789 YP_001270862.1 CDS Lreu_0255 NC_009513.1 291074 292201 D TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 291074..292201 Lactobacillus reuteri DSM 20016 5189698 YP_001270863.1 CDS Lreu_0256 NC_009513.1 292220 292594 D PFAM: PemK family protein; transcriptional modulator of MazE/toxin MazF 292220..292594 Lactobacillus reuteri DSM 20016 5189821 YP_001270864.1 CDS Lreu_0257 NC_009513.1 292785 294161 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 292785..294161 Lactobacillus reuteri DSM 20016 5189360 YP_001270865.1 CDS Lreu_0258 NC_009513.1 294152 295390 D PFAM: amidohydrolase; Amidohydrolase 3; N-isopropylammelide isopropylaminohydrolase 294152..295390 Lactobacillus reuteri DSM 20016 5188820 YP_001270866.1 CDS Lreu_0259 NC_009513.1 295775 296566 D PFAM: Hydratase/decarboxylase; hydratase/decarboxylase 295775..296566 Lactobacillus reuteri DSM 20016 5188851 YP_001270867.1 CDS Lreu_0260 NC_009513.1 296675 297313 R PFAM: CBS domain containing protein; hypothetical protein complement(296675..297313) Lactobacillus reuteri DSM 20016 5188888 YP_001270868.1 CDS Lreu_0261 NC_009513.1 297519 298079 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 297519..298079 Lactobacillus reuteri DSM 20016 5189338 YP_001270869.1 CDS Lreu_0262 NC_009513.1 298098 301637 D TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 298098..301637 Lactobacillus reuteri DSM 20016 5188946 YP_001270870.1 CDS Lreu_0263 NC_009513.1 301634 301906 D PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 301634..301906 Lactobacillus reuteri DSM 20016 5188837 YP_001270871.1 CDS Lreu_0264 NC_009513.1 302007 302363 D PFAM: Septum formation initiator; septum formation initiator 302007..302363 Lactobacillus reuteri DSM 20016 5189633 YP_001270872.1 CDS Lreu_0265 NC_009513.1 302547 303041 D PFAM: RNA binding S1 domain protein; RNA-binding S1 domain-containing protein 302547..303041 Lactobacillus reuteri DSM 20016 5189409 YP_001270873.1 CDS Lreu_0266 NC_009513.1 303043 304437 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase 303043..304437 Lactobacillus reuteri DSM 20016 5189122 YP_001270874.1 CDS Lreu_0267 NC_009513.1 304430 304972 D TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 304430..304972 Lactobacillus reuteri DSM 20016 5189837 YP_001270875.1 CDS Lreu_0268 NC_009513.1 305206 307314 D TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 305206..307314 Lactobacillus reuteri DSM 20016 5189944 YP_001270876.1 CDS hslO NC_009513.1 307405 308325 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 307405..308325 Lactobacillus reuteri DSM 20016 5189939 YP_001270877.1 CDS Lreu_0270 NC_009513.1 308433 309434 D TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; nifR3 family TIM-barrel protein 308433..309434 Lactobacillus reuteri DSM 20016 5188917 YP_001270878.1 CDS Lreu_0271 NC_009513.1 309455 310981 D TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; lysyl-tRNA synthetase 309455..310981 Lactobacillus reuteri DSM 20016 5189844 YP_001270879.1 CDS Lreu_0272 NC_009513.1 311107 311640 D hypothetical protein 311107..311640 Lactobacillus reuteri DSM 20016 5189748 YP_001270880.1 CDS Lreu_0273 NC_009513.1 317731 317919 D hypothetical protein 317731..317919 Lactobacillus reuteri DSM 20016 5189611 YP_001270881.1 CDS Lreu_0274 NC_009513.1 317909 318265 D PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 317909..318265 Lactobacillus reuteri DSM 20016 5189917 YP_001270882.1 CDS Lreu_0275 NC_009513.1 318336 319880 D PFAM: transposase IS66; transposase IS66 318336..319880 Lactobacillus reuteri DSM 20016 5188790 YP_001270883.1 CDS Lreu_0276 NC_009513.1 320936 321634 D hypothetical protein 320936..321634 Lactobacillus reuteri DSM 20016 5189453 YP_001270884.1 CDS Lreu_0277 NC_009513.1 321847 323346 D TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; amino acid/peptide transporter 321847..323346 Lactobacillus reuteri DSM 20016 5189787 YP_001270885.1 CDS Lreu_0278 NC_009513.1 323403 324233 D PFAM: metallophosphoesterase; metallophosphoesterase 323403..324233 Lactobacillus reuteri DSM 20016 5189483 YP_001270886.1 CDS Lreu_0279 NC_009513.1 324592 325236 D hypothetical protein 324592..325236 Lactobacillus reuteri DSM 20016 5189149 YP_001270887.1 CDS Lreu_0280 NC_009513.1 325354 326754 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 325354..326754 Lactobacillus reuteri DSM 20016 5189856 YP_001270888.1 CDS Lreu_0281 NC_009513.1 326845 328494 D TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; YidE/YbjL duplication 326845..328494 Lactobacillus reuteri DSM 20016 5189012 YP_001270889.1 CDS Lreu_0282 NC_009513.1 328527 329237 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; aspartate racemase 328527..329237 Lactobacillus reuteri DSM 20016 5188777 YP_001270890.1 CDS Lreu_0283 NC_009513.1 329403 330104 D PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 329403..330104 Lactobacillus reuteri DSM 20016 5188843 YP_001270891.1 CDS Lreu_0284 NC_009513.1 330166 331632 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 330166..331632 Lactobacillus reuteri DSM 20016 5189793 YP_001270892.1 CDS nadE NC_009513.1 331645 332472 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 331645..332472 Lactobacillus reuteri DSM 20016 5190006 YP_001270893.1 CDS Lreu_0286 NC_009513.1 332535 334715 D PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; RNA-binding S1 domain-containing protein 332535..334715 Lactobacillus reuteri DSM 20016 5188782 YP_001270894.1 CDS Lreu_0287 NC_009513.1 334708 335160 D PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; hypothetical protein 334708..335160 Lactobacillus reuteri DSM 20016 5189937 YP_001270895.1 CDS Lreu_0288 NC_009513.1 335463 337349 D PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; glycoside hydrolase 335463..337349 Lactobacillus reuteri DSM 20016 5188991 YP_001270896.1 CDS Lreu_0289 NC_009513.1 337333 338292 D PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 42 337333..338292 Lactobacillus reuteri DSM 20016 5190155 YP_001270897.1 CDS Lreu_0290 NC_009513.1 338390 340159 R hypothetical protein complement(338390..340159) Lactobacillus reuteri DSM 20016 5190060 YP_001270898.1 CDS Lreu_0291 NC_009513.1 340329 341039 D TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 340329..341039 Lactobacillus reuteri DSM 20016 5188746 YP_001270899.1 CDS Lreu_0292 NC_009513.1 341014 341880 D esterase/lipase-like protein 341014..341880 Lactobacillus reuteri DSM 20016 5188811 YP_001270900.1 CDS Lreu_0293 NC_009513.1 342146 343288 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; cystathionine gamma-lyase 342146..343288 Lactobacillus reuteri DSM 20016 5188817 YP_001270901.1 CDS Lreu_0294 NC_009513.1 343315 344016 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane protein 343315..344016 Lactobacillus reuteri DSM 20016 5190071 YP_001270902.1 CDS Lreu_0295 NC_009513.1 344022 344771 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 344022..344771 Lactobacillus reuteri DSM 20016 5190023 YP_001270903.1 CDS Lreu_0296 NC_009513.1 344787 345578 D PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 344787..345578 Lactobacillus reuteri DSM 20016 5190051 YP_001270904.1 CDS Lreu_0297 NC_009513.1 345686 347026 R PFAM: peptidase C1B, bleomycin hydrolase; Bleomycin hydrolase complement(345686..347026) Lactobacillus reuteri DSM 20016 5189470 YP_001270905.1 CDS Lreu_0298 NC_009513.1 347055 347738 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(347055..347738) Lactobacillus reuteri DSM 20016 5189757 YP_001270906.1 CDS Lreu_0299 NC_009513.1 347750 348046 R hypothetical protein complement(347750..348046) Lactobacillus reuteri DSM 20016 5190079 YP_001270907.1 CDS Lreu_0300 NC_009513.1 348185 348721 D PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase 348185..348721 Lactobacillus reuteri DSM 20016 5190004 YP_001270908.1 CDS Lreu_0301 NC_009513.1 348746 350119 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 348746..350119 Lactobacillus reuteri DSM 20016 5189376 YP_001270909.1 CDS Lreu_0302 NC_009513.1 350147 351289 D PFAM: PilT protein domain protein; SMART: Nucleotide binding protein, PINc; PilT domain-containing protein 350147..351289 Lactobacillus reuteri DSM 20016 5189734 YP_001270910.1 CDS cysS NC_009513.1 351664 353076 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 351664..353076 Lactobacillus reuteri DSM 20016 5189701 YP_001270911.1 CDS Lreu_0304 NC_009513.1 353088 353501 D PFAM: ribonuclease III; ribonuclease III 353088..353501 Lactobacillus reuteri DSM 20016 5188332 YP_001270912.1 CDS Lreu_0305 NC_009513.1 353491 354240 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; RNA methyltransferase 353491..354240 Lactobacillus reuteri DSM 20016 5189699 YP_001270913.1 CDS secE NC_009513.1 354455 354643 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 354455..354643 Lactobacillus reuteri DSM 20016 5190089 YP_001270914.1 CDS Lreu_0307 NC_009513.1 354762 355304 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; transcription antitermination protein nusG 354762..355304 Lactobacillus reuteri DSM 20016 5188799 YP_001270915.1 CDS rplK NC_009513.1 355444 355869 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 355444..355869 Lactobacillus reuteri DSM 20016 5189447 YP_001270916.1 CDS rplA NC_009513.1 355892 356653 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 355892..356653 Lactobacillus reuteri DSM 20016 5188842 YP_001270917.1 CDS Lreu_0310 NC_009513.1 356831 358024 D PFAM: aminotransferase, class I and II; GntR family transcriptional regulator 356831..358024 Lactobacillus reuteri DSM 20016 5189759 YP_001270918.1 CDS Lreu_0311 NC_009513.1 358500 359804 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 358500..359804 Lactobacillus reuteri DSM 20016 5189983 YP_001270919.1 CDS Lreu_0312 NC_009513.1 359817 360938 D PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 359817..360938 Lactobacillus reuteri DSM 20016 5189085 YP_001270920.1 CDS rplJ NC_009513.1 361136 361636 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 361136..361636 Lactobacillus reuteri DSM 20016 5189750 YP_001270921.1 CDS rplL NC_009513.1 361699 362064 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 361699..362064 Lactobacillus reuteri DSM 20016 5189851 YP_001270922.1 CDS Lreu_0315 NC_009513.1 362252 362536 R hypothetical protein complement(362252..362536) Lactobacillus reuteri DSM 20016 5189609 YP_001270923.1 CDS Lreu_0316 NC_009513.1 362669 362899 R hypothetical protein complement(362669..362899) Lactobacillus reuteri DSM 20016 5188775 YP_001270924.1 CDS Lreu_0317 NC_009513.1 363033 363404 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein complement(363033..363404) Lactobacillus reuteri DSM 20016 5189704 YP_001270925.1 CDS Lreu_0318 NC_009513.1 363594 363926 D PFAM: transcriptional regulator PadR family protein; PadR family transcriptional regulator 363594..363926 Lactobacillus reuteri DSM 20016 5189018 YP_001270926.1 CDS Lreu_0319 NC_009513.1 363919 364530 D hypothetical protein 363919..364530 Lactobacillus reuteri DSM 20016 5188733 YP_001270927.1 CDS Lreu_0320 NC_009513.1 364531 365286 D hypothetical protein 364531..365286 Lactobacillus reuteri DSM 20016 5190046 YP_001270928.1 CDS Lreu_0321 NC_009513.1 365374 368010 R PFAM: iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(365374..368010) Lactobacillus reuteri DSM 20016 5189831 YP_001270929.1 CDS nrdF NC_009513.1 368368 369387 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(368368..369387) Lactobacillus reuteri DSM 20016 5188369 YP_001270930.1 CDS Lreu_0323 NC_009513.1 369502 371673 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(369502..371673) Lactobacillus reuteri DSM 20016 5189380 YP_001270931.1 CDS Lreu_0324 NC_009513.1 371773 371994 R TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit complement(371773..371994) Lactobacillus reuteri DSM 20016 5188801 YP_001270932.1 CDS Lreu_0325 NC_009513.1 372252 372764 D PFAM: CMP/dCMP deaminase, zinc-binding; tRNA-adenosine deaminase 372252..372764 Lactobacillus reuteri DSM 20016 5189613 YP_001270933.1 CDS Lreu_0326 NC_009513.1 373037 374872 D TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 373037..374872 Lactobacillus reuteri DSM 20016 5188258 YP_001270934.1 CDS Lreu_0327 NC_009513.1 374893 375201 D PFAM: conserved hypothetical protein 103; hypothetical protein 374893..375201 Lactobacillus reuteri DSM 20016 5189495 YP_001270935.1 CDS recR NC_009513.1 375205 375807 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 375205..375807 Lactobacillus reuteri DSM 20016 5190038 YP_001270936.1 CDS Lreu_0329 NC_009513.1 375812 376060 D hypothetical protein 375812..376060 Lactobacillus reuteri DSM 20016 5190099 YP_001270937.1 CDS tmk NC_009513.1 376070 376711 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 376070..376711 Lactobacillus reuteri DSM 20016 5189072 YP_001270938.1 CDS Lreu_0331 NC_009513.1 376731 377054 D PFAM: protein of unknown function DUF970; hypothetical protein 376731..377054 Lactobacillus reuteri DSM 20016 5189378 YP_001270939.1 CDS Lreu_0332 NC_009513.1 377069 378082 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 377069..378082 Lactobacillus reuteri DSM 20016 5189924 YP_001270940.1 CDS Lreu_0333 NC_009513.1 378093 378443 D PFAM: protein of unknown function DUF972; hypothetical protein 378093..378443 Lactobacillus reuteri DSM 20016 5188881 YP_001270941.1 CDS Lreu_0334 NC_009513.1 378452 379318 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 378452..379318 Lactobacillus reuteri DSM 20016 5188996 YP_001270942.1 CDS Lreu_0335 NC_009513.1 379328 380089 D PFAM: acyl-ACP thioesterase; acyl-ACP thioesterase 379328..380089 Lactobacillus reuteri DSM 20016 5188833 YP_001270943.1 CDS Lreu_0336 NC_009513.1 380254 381768 D exopolyphosphatase-like protein 380254..381768 Lactobacillus reuteri DSM 20016 5189618 YP_001270944.1 CDS Lreu_0337 NC_009513.1 381770 384013 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 381770..384013 Lactobacillus reuteri DSM 20016 5188847 YP_001270945.1 CDS Lreu_0338 NC_009513.1 384017 384988 D PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 384017..384988 Lactobacillus reuteri DSM 20016 5189626 YP_001270946.1 CDS Lreu_0339 NC_009513.1 385100 386095 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; UDP-galactose 4-epimerase 385100..386095 Lactobacillus reuteri DSM 20016 5189589 YP_001270947.1 CDS Lreu_0341 NC_009513.1 387728 388453 D PFAM: peptidase M22, glycoprotease; peptidase M22, glycoprotease 387728..388453 Lactobacillus reuteri DSM 20016 5189910 YP_001270948.1 CDS Lreu_0342 NC_009513.1 388437 388991 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 388437..388991 Lactobacillus reuteri DSM 20016 5189259 YP_001270949.1 CDS Lreu_0343 NC_009513.1 389010 390041 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 389010..390041 Lactobacillus reuteri DSM 20016 5189931 YP_001270950.1 CDS Lreu_0344 NC_009513.1 390158 390931 R TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(390158..390931) Lactobacillus reuteri DSM 20016 5189810 YP_001270951.1 CDS proA NC_009513.1 390949 392193 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(390949..392193) Lactobacillus reuteri DSM 20016 5188822 YP_001270952.1 CDS Lreu_0346 NC_009513.1 392205 392993 R TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; glutamate 5-kinase complement(392205..392993) Lactobacillus reuteri DSM 20016 5189368 YP_001270953.1 CDS Lreu_0347 NC_009513.1 393587 394372 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 393587..394372 Lactobacillus reuteri DSM 20016 5188335 YP_001270954.1 CDS Lreu_0348 NC_009513.1 394386 395564 D produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 394386..395564 Lactobacillus reuteri DSM 20016 5188330 YP_001270955.1 CDS Lreu_0349 NC_009513.1 395578 396543 D TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 395578..396543 Lactobacillus reuteri DSM 20016 5189487 YP_001270956.1 CDS Lreu_0350 NC_009513.1 396620 398230 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(396620..398230) Lactobacillus reuteri DSM 20016 5188587 YP_001270957.1 CDS Lreu_0351 NC_009513.1 398374 400311 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(398374..400311) Lactobacillus reuteri DSM 20016 5188585 YP_001270958.1 CDS Lreu_0352 NC_009513.1 400552 401196 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 400552..401196 Lactobacillus reuteri DSM 20016 5189775 YP_001270959.1 CDS groES NC_009513.1 401431 401715 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 401431..401715 Lactobacillus reuteri DSM 20016 5189776 YP_001270960.1 CDS groEL NC_009513.1 401807 403435 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 401807..403435 Lactobacillus reuteri DSM 20016 5189364 YP_001270961.1 CDS Lreu_0355 NC_009513.1 403529 404017 D PFAM: YbaK/prolyl-tRNA synthetase associated region; Ala-tRNA(Pro) hydrolase 403529..404017 Lactobacillus reuteri DSM 20016 5189456 YP_001270962.1 CDS Lreu_0356 NC_009513.1 404099 405709 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 404099..405709 Lactobacillus reuteri DSM 20016 5188752 YP_001270963.1 CDS Lreu_0357 NC_009513.1 405794 407632 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 405794..407632 Lactobacillus reuteri DSM 20016 5189451 YP_001270964.1 CDS Lreu_0358 NC_009513.1 407659 407919 D hypothetical protein 407659..407919 Lactobacillus reuteri DSM 20016 5189731 YP_001270965.1 CDS Lreu_0359 NC_009513.1 408038 408448 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 408038..408448 Lactobacillus reuteri DSM 20016 5188256 YP_001270966.1 CDS Lreu_0360 NC_009513.1 408448 409833 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 408448..409833 Lactobacillus reuteri DSM 20016 5188785 YP_001270967.1 CDS Lreu_0361 NC_009513.1 409876 410508 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; hypothetical protein complement(409876..410508) Lactobacillus reuteri DSM 20016 5190069 YP_001270968.1 CDS Lreu_0362 NC_009513.1 410570 411901 D PFAM: helicase domain protein; type III restriction protein, res subunit; SMART: DEAD-like helicases-like; helicase domain-containing protein 410570..411901 Lactobacillus reuteri DSM 20016 5189450 YP_001270969.1 CDS Lreu_0363 NC_009513.1 411882 412562 D amidophosphoribosyltransferase-like protein 411882..412562 Lactobacillus reuteri DSM 20016 5188797 YP_001270970.1 CDS Lreu_0364 NC_009513.1 412694 413242 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30P 412694..413242 Lactobacillus reuteri DSM 20016 5189658 YP_001270971.1 CDS Lreu_0365 NC_009513.1 413454 415817 D TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; protein translocase subunit secA 413454..415817 Lactobacillus reuteri DSM 20016 5189949 YP_001270972.1 CDS Lreu_0366 NC_009513.1 416017 417015 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 2 416017..417015 Lactobacillus reuteri DSM 20016 5188919 YP_001270973.1 CDS Lreu_0367 NC_009513.1 417045 417380 D PFAM: PspC domain protein; phage shock protein C 417045..417380 Lactobacillus reuteri DSM 20016 5188921 YP_001270974.1 CDS Lreu_0368 NC_009513.1 417377 417736 D PFAM: membrane protein of unknown function; hypothetical protein 417377..417736 Lactobacillus reuteri DSM 20016 5188858 YP_001270975.1 CDS Lreu_0369 NC_009513.1 417751 418713 D TIGRFAM: HPr(Ser) kinase/phosphatase; PFAM: HPr serine kinase domain protein; HPr kinase 417751..418713 Lactobacillus reuteri DSM 20016 5189436 YP_001270976.1 CDS Lreu_0370 NC_009513.1 418714 419541 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 418714..419541 Lactobacillus reuteri DSM 20016 5189834 YP_001270977.1 CDS gpsA NC_009513.1 419567 420583 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 419567..420583 Lactobacillus reuteri DSM 20016 5189746 YP_001270978.1 CDS Lreu_0372 NC_009513.1 420648 421562 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UDP-glucose pyrophosphorylase 420648..421562 Lactobacillus reuteri DSM 20016 5189647 YP_001270979.1 CDS Lreu_0373 NC_009513.1 421634 422368 R PFAM: protein of unknown function DUF162; hypothetical protein complement(421634..422368) Lactobacillus reuteri DSM 20016 5189581 YP_001270980.1 CDS Lreu_0374 NC_009513.1 422361 423848 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF162; iron-sulfur cluster binding protein complement(422361..423848) Lactobacillus reuteri DSM 20016 5189742 YP_001270981.1 CDS Lreu_0375 NC_009513.1 423849 424718 R PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein complement(423849..424718) Lactobacillus reuteri DSM 20016 5188815 YP_001270982.1 CDS Lreu_0376 NC_009513.1 424915 425847 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; thioredoxin reductase 424915..425847 Lactobacillus reuteri DSM 20016 5188949 YP_001270983.1 CDS Lreu_0377 NC_009513.1 425941 427110 D TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 425941..427110 Lactobacillus reuteri DSM 20016 5189717 YP_001270984.1 CDS Lreu_0378 NC_009513.1 427369 428253 D PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 427369..428253 Lactobacillus reuteri DSM 20016 5188808 YP_001270985.1 CDS Lreu_0379 NC_009513.1 428299 428805 D PFAM: thioesterase superfamily protein; thioesterase superfamily protein 428299..428805 Lactobacillus reuteri DSM 20016 5189532 YP_001270986.1 CDS Lreu_0380 NC_009513.1 428895 430619 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; alpha-phosphoglucomutase 428895..430619 Lactobacillus reuteri DSM 20016 5189513 YP_001270987.1 CDS Lreu_0381 NC_009513.1 430786 431424 D HD superfamily hydrolase-like protein 430786..431424 Lactobacillus reuteri DSM 20016 5189425 YP_001270988.1 CDS Lreu_0382 NC_009513.1 431529 431801 D hypothetical protein 431529..431801 Lactobacillus reuteri DSM 20016 5188852 YP_001270989.1 CDS Lreu_0383 NC_009513.1 431966 434038 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 431966..434038 Lactobacillus reuteri DSM 20016 5189457 YP_001270990.1 CDS Lreu_0384 NC_009513.1 434054 436918 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 434054..436918 Lactobacillus reuteri DSM 20016 5189420 YP_001270991.1 CDS Lreu_0385 NC_009513.1 437157 438518 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 437157..438518 Lactobacillus reuteri DSM 20016 5189628 YP_001270992.1 CDS Lreu_0386 NC_009513.1 438605 439498 D PFAM: uncharacterised P-loop ATPase protein UPF0042; hypothetical protein 438605..439498 Lactobacillus reuteri DSM 20016 5189888 YP_001270993.1 CDS Lreu_0387 NC_009513.1 439514 440500 D PFAM: CofD; CofD protein 439514..440500 Lactobacillus reuteri DSM 20016 5190124 YP_001270994.1 CDS Lreu_0388 NC_009513.1 440519 441460 D PFAM: protein of unknown function DUF199; hypothetical protein 440519..441460 Lactobacillus reuteri DSM 20016 5190157 YP_001270995.1 CDS clpP NC_009513.1 442357 442950 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 442357..442950 Lactobacillus reuteri DSM 20016 5189710 YP_001270996.1 CDS Lreu_0390 NC_009513.1 443355 444737 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 443355..444737 Lactobacillus reuteri DSM 20016 5189809 YP_001270997.1 CDS Lreu_0391 NC_009513.1 444855 446405 D PFAM: TrkA-C domain protein; Chloride channel, core; chloride channel protein 444855..446405 Lactobacillus reuteri DSM 20016 5189502 YP_001270998.1 CDS Lreu_0392 NC_009513.1 446472 446711 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 446472..446711 Lactobacillus reuteri DSM 20016 5189524 YP_001270999.1 CDS Lreu_0393 NC_009513.1 446790 447566 D esterase/lipase-like protein 446790..447566 Lactobacillus reuteri DSM 20016 5190135 YP_001271000.1 CDS Lreu_0394 NC_009513.1 447553 449958 D TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; ribonuclease R 447553..449958 Lactobacillus reuteri DSM 20016 5189490 YP_001271001.1 CDS smpB NC_009513.1 449976 450449 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 449976..450449 Lactobacillus reuteri DSM 20016 5189485 YP_001271002.1 CDS Lreu_0396 NC_009513.1 450506 451090 R hypothetical protein complement(450506..451090) Lactobacillus reuteri DSM 20016 5189416 YP_001271003.1 CDS Lreu_0397 NC_009513.1 451241 451930 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 451241..451930 Lactobacillus reuteri DSM 20016 5189688 YP_001271004.1 CDS eutD NC_009513.1 451991 452965 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 451991..452965 Lactobacillus reuteri DSM 20016 5189417 YP_001271005.1 CDS Lreu_0399 NC_009513.1 453085 453543 D PFAM: protein of unknown function UPF0079; hypothetical protein 453085..453543 Lactobacillus reuteri DSM 20016 5189496 YP_001271006.1 CDS Lreu_0400 NC_009513.1 453543 454052 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 453543..454052 Lactobacillus reuteri DSM 20016 5189017 YP_001271007.1 CDS Lreu_0401 NC_009513.1 454085 454507 R hypothetical protein complement(454085..454507) Lactobacillus reuteri DSM 20016 5189884 YP_001271008.1 CDS Lreu_0402 NC_009513.1 454519 455058 R PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; exonuclease complement(454519..455058) Lactobacillus reuteri DSM 20016 5189561 YP_001271009.1 CDS murB NC_009513.1 455183 456079 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 455183..456079 Lactobacillus reuteri DSM 20016 5189400 YP_001271010.1 CDS Lreu_0404 NC_009513.1 456412 457335 D TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; ribokinase 456412..457335 Lactobacillus reuteri DSM 20016 5188903 YP_001271011.1 CDS Lreu_0405 NC_009513.1 457347 457742 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 457347..457742 Lactobacillus reuteri DSM 20016 5189868 YP_001271012.1 CDS Lreu_0406 NC_009513.1 457761 459116 D TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1; L-fucose transporter 457761..459116 Lactobacillus reuteri DSM 20016 5188967 YP_001271013.1 CDS Lreu_0407 NC_009513.1 459276 460127 D PFAM: protein of unknown function DUF147; hypothetical protein 459276..460127 Lactobacillus reuteri DSM 20016 5189649 YP_001271014.1 CDS Lreu_0408 NC_009513.1 460111 461010 D PFAM: YbbR family protein; hypothetical protein 460111..461010 Lactobacillus reuteri DSM 20016 5189402 YP_001271015.1 CDS glmM NC_009513.1 461038 462393 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 461038..462393 Lactobacillus reuteri DSM 20016 5189419 YP_001271016.1 CDS Lreu_0410 NC_009513.1 462602 464422 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 462602..464422 Lactobacillus reuteri DSM 20016 5188772 YP_001271017.1 CDS Lreu_0411 NC_009513.1 464683 464994 D hypothetical protein 464683..464994 Lactobacillus reuteri DSM 20016 5188945 YP_001271018.1 CDS Lreu_0412 NC_009513.1 465056 466921 D PFAM: acyltransferase 3; acyltransferase 3 465056..466921 Lactobacillus reuteri DSM 20016 5189414 YP_001271019.1 CDS Lreu_0413 NC_009513.1 466932 467387 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 466932..467387 Lactobacillus reuteri DSM 20016 5189912 YP_001271020.1 CDS Lreu_0414 NC_009513.1 467392 468198 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; cof family hydrolase 467392..468198 Lactobacillus reuteri DSM 20016 5190168 YP_001271021.1 CDS Lreu_0415 NC_009513.1 468521 469132 D PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM 468521..469132 Lactobacillus reuteri DSM 20016 5188856 YP_001271022.1 CDS Lreu_0416 NC_009513.1 469742 470461 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 469742..470461 Lactobacillus reuteri DSM 20016 5189002 YP_001271023.1 CDS Lreu_0417 NC_009513.1 470461 471948 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 470461..471948 Lactobacillus reuteri DSM 20016 5189535 YP_001271024.1 CDS Lreu_0418 NC_009513.1 472117 472977 D PFAM: sugar transport family protein; sugar transport family protein 472117..472977 Lactobacillus reuteri DSM 20016 5190068 YP_001271025.1 CDS Lreu_0419 NC_009513.1 473052 473666 R PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(473052..473666) Lactobacillus reuteri DSM 20016 5189770 YP_001271026.1 CDS pgi NC_009513.1 473847 475205 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 473847..475205 Lactobacillus reuteri DSM 20016 5189737 YP_001271027.1 CDS Lreu_0421 NC_009513.1 475692 475991 R hypothetical protein complement(475692..475991) Lactobacillus reuteri DSM 20016 5189354 YP_001271028.1 CDS Lreu_0422 NC_009513.1 476129 476335 D sugar (pentulose and hexulose) kinase-like protein 476129..476335 Lactobacillus reuteri DSM 20016 5189388 YP_001271029.1 CDS Lreu_0423 NC_009513.1 476481 476939 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(476481..476939) Lactobacillus reuteri DSM 20016 5188754 YP_001271030.1 CDS Lreu_0424 NC_009513.1 477160 477999 R PFAM: response regulator receiver; YcbB domain; response regulator receiver protein complement(477160..477999) Lactobacillus reuteri DSM 20016 5189403 YP_001271031.1 CDS Lreu_0425 NC_009513.1 478252 479259 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 478252..479259 Lactobacillus reuteri DSM 20016 5188926 YP_001271032.1 CDS Lreu_0426 NC_009513.1 479276 480208 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 479276..480208 Lactobacillus reuteri DSM 20016 5189431 YP_001271033.1 CDS Lreu_0427 NC_009513.1 480252 481166 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(480252..481166) Lactobacillus reuteri DSM 20016 5189357 YP_001271034.1 CDS Lreu_0428 NC_009513.1 481250 481831 R PFAM: peptidase M10A and M12B, matrixin and adamalysin; peptidase M10A and M12B, matrixin and adamalysin complement(481250..481831) Lactobacillus reuteri DSM 20016 5189362 YP_001271035.1 CDS Lreu_0429 NC_009513.1 482107 482475 D hypothetical protein 482107..482475 Lactobacillus reuteri DSM 20016 5189807 YP_001271036.1 CDS Lreu_0430 NC_009513.1 482475 482762 D hypothetical protein 482475..482762 Lactobacillus reuteri DSM 20016 5189871 YP_001271037.1 CDS Lreu_0431 NC_009513.1 482762 484699 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase, type 3; copper-translocating P-type ATPase 482762..484699 Lactobacillus reuteri DSM 20016 5189556 YP_001271038.1 CDS Lreu_0432 NC_009513.1 484818 485294 D hypothetical protein 484818..485294 Lactobacillus reuteri DSM 20016 5189534 YP_001271039.1 CDS Lreu_0433 NC_009513.1 485523 485852 D hypothetical protein 485523..485852 Lactobacillus reuteri DSM 20016 5189473 YP_001271040.1 CDS Lreu_0435 NC_009513.1 488117 488326 R hypothetical protein complement(488117..488326) Lactobacillus reuteri DSM 20016 5189850 YP_001271041.1 CDS Lreu_0436 NC_009513.1 488749 489996 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(488749..489996) Lactobacillus reuteri DSM 20016 5189384 YP_001271042.1 CDS Lreu_0437 NC_009513.1 491172 491537 R hypothetical protein complement(491172..491537) Lactobacillus reuteri DSM 20016 5189433 YP_001271043.1 CDS Lreu_0438 NC_009513.1 492089 492490 R hypothetical protein complement(492089..492490) Lactobacillus reuteri DSM 20016 5188886 YP_001271044.1 CDS Lreu_0439 NC_009513.1 492957 493916 R hypothetical protein complement(492957..493916) Lactobacillus reuteri DSM 20016 5189449 YP_001271045.1 CDS Lreu_0440 NC_009513.1 494157 494627 R hypothetical protein complement(494157..494627) Lactobacillus reuteri DSM 20016 5189946 YP_001271046.1 CDS Lreu_0441 NC_009513.1 494784 495548 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(494784..495548) Lactobacillus reuteri DSM 20016 5189607 YP_001271047.1 CDS Lreu_0442 NC_009513.1 495545 496144 R hypothetical protein complement(495545..496144) Lactobacillus reuteri DSM 20016 5189482 YP_001271048.1 CDS Lreu_0443 NC_009513.1 496370 496963 R hypothetical protein complement(496370..496963) Lactobacillus reuteri DSM 20016 5188975 YP_001271049.1 CDS Lreu_0444 NC_009513.1 497154 498173 D PFAM: beta-lactamase; beta-lactamase 497154..498173 Lactobacillus reuteri DSM 20016 5188990 YP_001271050.1 CDS Lreu_0445 NC_009513.1 498381 499613 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 498381..499613 Lactobacillus reuteri DSM 20016 5188997 YP_001271051.1 CDS Lreu_0446 NC_009513.1 499724 500185 D PFAM: arginine repressor; ArgR family transcriptional regulator 499724..500185 Lactobacillus reuteri DSM 20016 5189566 YP_001271052.1 CDS Lreu_0447 NC_009513.1 500206 501627 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 500206..501627 Lactobacillus reuteri DSM 20016 5190050 YP_001271053.1 CDS Lreu_0448 NC_009513.1 501685 503082 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 501685..503082 Lactobacillus reuteri DSM 20016 5189993 YP_001271054.1 CDS Lreu_0449 NC_009513.1 503465 504172 R PFAM: CobB/CobQ domain protein glutamine amidotransferase; glutamine amidotransferase complement(503465..504172) Lactobacillus reuteri DSM 20016 5189839 YP_001271055.1 CDS Lreu_0450 NC_009513.1 504172 505509 R PFAM: Mur ligase, middle domain protein; domain of unknown function DUF1727; hypothetical protein complement(504172..505509) Lactobacillus reuteri DSM 20016 5189497 YP_001271056.1 CDS Lreu_0451 NC_009513.1 505739 506314 D PFAM: thymidine kinase; thymidine kinase 505739..506314 Lactobacillus reuteri DSM 20016 5188855 YP_001271057.1 CDS prfA NC_009513.1 506330 507418 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 506330..507418 Lactobacillus reuteri DSM 20016 5189415 YP_001271058.1 CDS Lreu_0453 NC_009513.1 507411 508277 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; HemK family modification methylase 507411..508277 Lactobacillus reuteri DSM 20016 5189512 YP_001271059.1 CDS Lreu_0454 NC_009513.1 508283 509311 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; translation factor SUA5 508283..509311 Lactobacillus reuteri DSM 20016 5189707 YP_001271060.1 CDS glyA NC_009513.1 509425 510660 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 509425..510660 Lactobacillus reuteri DSM 20016 5189900 YP_001271061.1 CDS upp NC_009513.1 510753 511388 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 510753..511388 Lactobacillus reuteri DSM 20016 5189304 YP_001271062.1 CDS Lreu_0457 NC_009513.1 511519 513246 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein, mobile region; PEP-utilising protein domain protein; phosphoenolpyruvate--protein phosphotransferase 511519..513246 Lactobacillus reuteri DSM 20016 5189493 YP_001271063.1 CDS Lreu_0458 NC_009513.1 513348 514463 D PFAM: YibE/F family protein; hypothetical protein 513348..514463 Lactobacillus reuteri DSM 20016 5189631 YP_001271064.1 CDS Lreu_0459 NC_009513.1 514460 515233 D PFAM: YibE/F family protein; hypothetical protein 514460..515233 Lactobacillus reuteri DSM 20016 5189359 YP_001271065.1 CDS Lreu_0460 NC_009513.1 515393 516664 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 515393..516664 Lactobacillus reuteri DSM 20016 5189619 YP_001271066.1 CDS Lreu_0461 NC_009513.1 516979 517686 D TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; ATP synthase F0 subunit A 516979..517686 Lactobacillus reuteri DSM 20016 5189814 YP_001271067.1 CDS Lreu_0462 NC_009513.1 517711 517929 D TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; ATP synthase F0 subunit C 517711..517929 Lactobacillus reuteri DSM 20016 5188958 YP_001271068.1 CDS Lreu_0463 NC_009513.1 517975 518493 D TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; ATP synthase F0 subunit B 517975..518493 Lactobacillus reuteri DSM 20016 5188932 YP_001271069.1 CDS Lreu_0464 NC_009513.1 518483 519025 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 518483..519025 Lactobacillus reuteri DSM 20016 5189519 YP_001271070.1 CDS Lreu_0465 NC_009513.1 519057 520586 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 519057..520586 Lactobacillus reuteri DSM 20016 5188458 YP_001271071.1 CDS Lreu_0466 NC_009513.1 520622 521566 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 520622..521566 Lactobacillus reuteri DSM 20016 5189228 YP_001271072.1 CDS Lreu_0467 NC_009513.1 521593 523020 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 521593..523020 Lactobacillus reuteri DSM 20016 5188536 YP_001271073.1 CDS atpC NC_009513.1 523032 523463 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 523032..523463 Lactobacillus reuteri DSM 20016 5188554 YP_001271074.1 CDS Lreu_0469 NC_009513.1 523699 523929 D TIGRFAM: conserved hypothetical integral membrane protein; PFAM: conserved hypothetical protein, integral membrane YwzB; hypothetical protein 523699..523929 Lactobacillus reuteri DSM 20016 5189514 YP_001271075.1 CDS Lreu_0470 NC_009513.1 523948 525264 D TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); UDP-N-acetylglucosamine 1-carboxyvinyltransferase 523948..525264 Lactobacillus reuteri DSM 20016 5188769 YP_001271076.1 CDS Lreu_0471 NC_009513.1 525371 526363 D TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; rod shape-determining protein MreB 525371..526363 Lactobacillus reuteri DSM 20016 5189722 YP_001271077.1 CDS Lreu_0472 NC_009513.1 526369 526605 D PFAM: protein of unknown function DUF37; hypothetical protein 526369..526605 Lactobacillus reuteri DSM 20016 5189641 YP_001271078.1 CDS Lreu_0473 NC_009513.1 526629 526853 D hypothetical protein 526629..526853 Lactobacillus reuteri DSM 20016 5189604 YP_001271079.1 CDS Lreu_0474 NC_009513.1 526902 528095 D PFAM: cell cycle protein; cell cycle protein 526902..528095 Lactobacillus reuteri DSM 20016 5189661 YP_001271080.1 CDS Lreu_0475 NC_009513.1 528108 528401 D PFAM: glycine cleavage H-protein; glycine cleavage H-protein 528108..528401 Lactobacillus reuteri DSM 20016 5188774 YP_001271081.1 CDS Lreu_0476 NC_009513.1 528593 529975 D hypothetical protein 528593..529975 Lactobacillus reuteri DSM 20016 5188764 YP_001271082.1 CDS ddl NC_009513.1 530114 531250 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 530114..531250 Lactobacillus reuteri DSM 20016 5188977 YP_001271083.1 CDS Lreu_0478 NC_009513.1 531685 532530 D PFAM: helix-turn-helix domain protein; SMART: Tetratricopeptide domain protein; helix-turn-helix domain-containing protein 531685..532530 Lactobacillus reuteri DSM 20016 5189023 YP_001271084.1 CDS Lreu_0479 NC_009513.1 532927 534342 D TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 532927..534342 Lactobacillus reuteri DSM 20016 5190005 YP_001271085.1 CDS Lreu_0480 NC_009513.1 534355 535977 D PFAM: carbohydrate kinase, FGGY; carbohydrate kinase FGGY 534355..535977 Lactobacillus reuteri DSM 20016 5190036 YP_001271086.1 CDS araD NC_009513.1 535981 536709 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 535981..536709 Lactobacillus reuteri DSM 20016 5189833 YP_001271087.1 CDS Lreu_0482 NC_009513.1 536763 538184 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 536763..538184 Lactobacillus reuteri DSM 20016 5189863 YP_001271088.1 CDS Lreu_0483 NC_009513.1 538270 538839 D PFAM: transferase hexapeptide repeat containing protein; maltose O-acetyltransferase 538270..538839 Lactobacillus reuteri DSM 20016 5189458 YP_001271089.1 CDS Lreu_0484 NC_009513.1 538928 539770 R PFAM: aldo/keto reductase; aldo/keto reductase complement(538928..539770) Lactobacillus reuteri DSM 20016 5190096 YP_001271090.1 CDS Lreu_0485 NC_009513.1 539763 540860 R PFAM: regulatory protein GntR, HTH; periplasmic binding protein/LacI transcriptional regulator; GntR family transcriptional regulator complement(539763..540860) Lactobacillus reuteri DSM 20016 5188830 YP_001271091.1 CDS Lreu_0486 NC_009513.1 540972 541460 R PFAM: UspA domain protein; UspA domain-containing protein complement(540972..541460) Lactobacillus reuteri DSM 20016 5188915 YP_001271092.1 CDS Lreu_0487 NC_009513.1 541544 541840 R hypothetical protein complement(541544..541840) Lactobacillus reuteri DSM 20016 5189591 YP_001271093.1 CDS Lreu_0488 NC_009513.1 542146 543450 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; recombination factor protein RarA complement(542146..543450) Lactobacillus reuteri DSM 20016 5189948 YP_001271094.1 CDS Lreu_0489 NC_009513.1 543454 543942 R PFAM: protein of unknown function DUF1694; hypothetical protein complement(543454..543942) Lactobacillus reuteri DSM 20016 5189466 YP_001271095.1 CDS Lreu_0490 NC_009513.1 544068 544349 D hypothetical protein 544068..544349 Lactobacillus reuteri DSM 20016 5188816 YP_001271096.1 CDS Lreu_0491 NC_009513.1 544407 544814 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(544407..544814) Lactobacillus reuteri DSM 20016 5189505 YP_001271097.1 CDS Lreu_0492 NC_009513.1 544839 545582 R hypothetical protein complement(544839..545582) Lactobacillus reuteri DSM 20016 5188787 YP_001271098.1 CDS Lreu_0493 NC_009513.1 545835 546584 D PFAM: protein of unknown function DUF328; hypothetical protein 545835..546584 Lactobacillus reuteri DSM 20016 5188736 YP_001271099.1 CDS Lreu_0494 NC_009513.1 546700 548430 D catalyzes the formation of formyl-CoA from oxalyl-CoA; oxalyl-CoA decarboxylase 546700..548430 Lactobacillus reuteri DSM 20016 5189001 YP_001271100.1 CDS Lreu_0495 NC_009513.1 548423 549277 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 548423..549277 Lactobacillus reuteri DSM 20016 5188955 YP_001271101.1 CDS Lreu_0496 NC_009513.1 549420 549878 D PFAM: transposase IS200-family protein; transposase IS200-family protein 549420..549878 Lactobacillus reuteri DSM 20016 5190165 YP_001271102.1 CDS Lreu_0497 NC_009513.1 550020 550523 D acyl-CoA transferase/carnitine dehydratase-like protein 550020..550523 Lactobacillus reuteri DSM 20016 5189897 YP_001271103.1 CDS Lreu_0498 NC_009513.1 551030 552412 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase 551030..552412 Lactobacillus reuteri DSM 20016 5189437 YP_001271104.1 CDS Lreu_0499 NC_009513.1 552661 553995 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; xanthine/uracil/vitamin C permease 552661..553995 Lactobacillus reuteri DSM 20016 5189418 YP_001271105.1 CDS rpsD NC_009513.1 554127 554732 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(554127..554732) Lactobacillus reuteri DSM 20016 5189779 YP_001271106.1 CDS Lreu_0501 NC_009513.1 555123 556826 D acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 555123..556826 Lactobacillus reuteri DSM 20016 5188846 YP_001271107.1 CDS Lreu_0502 NC_009513.1 557050 558198 D PFAM: aminotransferase, class V; class V aminotransferase 557050..558198 Lactobacillus reuteri DSM 20016 5189559 YP_001271108.1 CDS Lreu_0503 NC_009513.1 558220 559440 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 558220..559440 Lactobacillus reuteri DSM 20016 5188954 YP_001271109.1 CDS valS NC_009513.1 559767 562421 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 559767..562421 Lactobacillus reuteri DSM 20016 5189693 YP_001271110.1 CDS Lreu_0505 NC_009513.1 562804 564222 D PFAM: cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 562804..564222 Lactobacillus reuteri DSM 20016 5188845 YP_001271111.1 CDS Lreu_0506 NC_009513.1 564223 565239 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 564223..565239 Lactobacillus reuteri DSM 20016 5189768 YP_001271112.1 CDS Lreu_0507 NC_009513.1 565291 566976 D TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein 565291..566976 Lactobacillus reuteri DSM 20016 5189227 YP_001271113.1 CDS Lreu_0508 NC_009513.1 566969 568714 D TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein 566969..568714 Lactobacillus reuteri DSM 20016 5188756 YP_001271114.1 CDS Lreu_0509 NC_009513.1 568769 569983 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 568769..569983 Lactobacillus reuteri DSM 20016 5188844 YP_001271115.1 CDS Lreu_0510 NC_009513.1 570086 571399 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 570086..571399 Lactobacillus reuteri DSM 20016 5189540 YP_001271116.1 CDS Lreu_0511 NC_009513.1 571466 572098 D PFAM: DNA repair protein RadC; DNA repair protein RadC 571466..572098 Lactobacillus reuteri DSM 20016 5189741 YP_001271117.1 CDS Lreu_0512 NC_009513.1 572234 573235 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 572234..573235 Lactobacillus reuteri DSM 20016 5189683 YP_001271118.1 CDS Lreu_0513 NC_009513.1 573369 574226 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 573369..574226 Lactobacillus reuteri DSM 20016 5188950 YP_001271119.1 CDS Lreu_0514 NC_009513.1 574233 574769 D rod shape-determining protein MreD 574233..574769 Lactobacillus reuteri DSM 20016 5188951 YP_001271120.1 CDS Lreu_0515 NC_009513.1 575238 575885 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane protein 575238..575885 Lactobacillus reuteri DSM 20016 5189015 YP_001271121.1 CDS Lreu_0516 NC_009513.1 575900 576550 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 575900..576550 Lactobacillus reuteri DSM 20016 5188738 YP_001271122.1 CDS Lreu_0517 NC_009513.1 576568 577419 D PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 576568..577419 Lactobacillus reuteri DSM 20016 5188947 YP_001271123.1 CDS Lreu_0518 NC_009513.1 577623 578870 D PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 577623..578870 Lactobacillus reuteri DSM 20016 5189548 YP_001271124.1 CDS Lreu_0519 NC_009513.1 578875 580173 D PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 578875..580173 Lactobacillus reuteri DSM 20016 5188849 YP_001271125.1 CDS Lreu_0520 NC_009513.1 580272 581309 D hypothetical protein 580272..581309 Lactobacillus reuteri DSM 20016 5189257 YP_001271126.1 CDS Lreu_0521 NC_009513.1 581337 581924 D TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 581337..581924 Lactobacillus reuteri DSM 20016 5188759 YP_001271127.1 CDS Lreu_0522 NC_009513.1 582049 583296 D TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; competence/damage-inducible protein CinA 582049..583296 Lactobacillus reuteri DSM 20016 5188755 YP_001271128.1 CDS recA NC_009513.1 583386 584474 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 583386..584474 Lactobacillus reuteri DSM 20016 5189467 YP_001271129.1 CDS Lreu_0524 NC_009513.1 584710 586251 D TIGRFAM: metal dependent phophohydrolase; PFAM: KH, type 1, domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KH domain protein; metal dependent phosphohydrolase 584710..586251 Lactobacillus reuteri DSM 20016 5188897 YP_001271130.1 CDS Lreu_0525 NC_009513.1 586413 589058 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 586413..589058 Lactobacillus reuteri DSM 20016 5190102 YP_001271131.1 CDS mutL NC_009513.1 589070 591076 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 589070..591076 Lactobacillus reuteri DSM 20016 5188393 YP_001271132.1 CDS ruvA NC_009513.1 591089 591688 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 591089..591688 Lactobacillus reuteri DSM 20016 5188879 YP_001271133.1 CDS ruvB NC_009513.1 591703 592719 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 591703..592719 Lactobacillus reuteri DSM 20016 5189906 YP_001271134.1 CDS Lreu_0529 NC_009513.1 592732 593820 D TIGRFAM: tRNA-guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase; tRNA-guanine transglycosylase 592732..593820 Lactobacillus reuteri DSM 20016 5188540 YP_001271135.1 CDS Lreu_0530 NC_009513.1 593892 594356 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; protein translocase subunit yajC 593892..594356 Lactobacillus reuteri DSM 20016 5189654 YP_001271136.1 CDS Lreu_0531 NC_009513.1 594483 595442 D PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; phosphoesterase domain-containing protein 594483..595442 Lactobacillus reuteri DSM 20016 5188741 YP_001271137.1 CDS Lreu_0532 NC_009513.1 595456 596829 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 595456..596829 Lactobacillus reuteri DSM 20016 5190152 YP_001271138.1 CDS Lreu_0533 NC_009513.1 597088 599742 D TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase, class IIc; phosphoesterase, DHHA1; Threonyl/alanyl tRNA synthetase, SAD; alanyl-tRNA synthetase 597088..599742 Lactobacillus reuteri DSM 20016 5188742 YP_001271139.1 CDS Lreu_0534 NC_009513.1 600012 600278 D PFAM: protein of unknown function DUF965; hypothetical protein 600012..600278 Lactobacillus reuteri DSM 20016 5188468 YP_001271140.1 CDS Lreu_0535 NC_009513.1 600275 600718 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 600275..600718 Lactobacillus reuteri DSM 20016 5189189 YP_001271141.1 CDS Lreu_0536 NC_009513.1 600728 601024 D PFAM: protein of unknown function DUF1292; hypothetical protein 600728..601024 Lactobacillus reuteri DSM 20016 5188734 YP_001271142.1 CDS Lreu_0537 NC_009513.1 601123 601659 D PFAM: Colicin V production protein; colicin V production protein 601123..601659 Lactobacillus reuteri DSM 20016 5189861 YP_001271143.1 CDS Lreu_0538 NC_009513.1 601661 604036 D TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; MutS2 family protein 601661..604036 Lactobacillus reuteri DSM 20016 5189468 YP_001271144.1 CDS Lreu_0539 NC_009513.1 604127 604441 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 604127..604441 Lactobacillus reuteri DSM 20016 5188177 YP_001271145.1 CDS Lreu_0540 NC_009513.1 604496 605050 R hypothetical protein complement(604496..605050) Lactobacillus reuteri DSM 20016 5188522 YP_001271146.1 CDS Lreu_0541 NC_009513.1 605205 606008 D TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 605205..606008 Lactobacillus reuteri DSM 20016 5188459 YP_001271147.1 CDS Lreu_0542 NC_009513.1 606010 606597 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 606010..606597 Lactobacillus reuteri DSM 20016 5188347 YP_001271148.1 CDS Lreu_0543 NC_009513.1 606603 607121 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; phosphodiesterase 606603..607121 Lactobacillus reuteri DSM 20016 5188541 YP_001271149.1 CDS Lreu_0544 NC_009513.1 607142 607585 D PFAM: CBS domain containing protein; hypothetical protein 607142..607585 Lactobacillus reuteri DSM 20016 5188274 YP_001271150.1 CDS Lreu_0545 NC_009513.1 607691 608527 R PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; hydrolase complement(607691..608527) Lactobacillus reuteri DSM 20016 5188384 YP_001271151.1 CDS Lreu_0546 NC_009513.1 608517 609392 R PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(608517..609392) Lactobacillus reuteri DSM 20016 5189594 YP_001271152.1 CDS Lreu_0547 NC_009513.1 609535 609975 D PFAM: protein of unknown function DUF948; hypothetical protein 609535..609975 Lactobacillus reuteri DSM 20016 5188552 YP_001271153.1 CDS Lreu_0548 NC_009513.1 609968 610426 D hypothetical protein 609968..610426 Lactobacillus reuteri DSM 20016 5189092 YP_001271154.1 CDS Lreu_0549 NC_009513.1 610467 611576 R PFAM: creatinase; peptidase M24; peptidase M24 complement(610467..611576) Lactobacillus reuteri DSM 20016 5188569 YP_001271155.1 CDS Lreu_0550 NC_009513.1 611728 612738 D TIGRFAM: catabolite control protein A; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 611728..612738 Lactobacillus reuteri DSM 20016 5188638 YP_001271156.1 CDS Lreu_0551 NC_009513.1 612752 613597 D hypothetical protein 612752..613597 Lactobacillus reuteri DSM 20016 5188500 YP_001271157.1 CDS Lreu_0552 NC_009513.1 613672 614418 D PFAM: protein of unknown function DUF28; hypothetical protein 613672..614418 Lactobacillus reuteri DSM 20016 5188699 YP_001271158.1 CDS Lreu_0553 NC_009513.1 614539 615516 D PFAM: type II secretion system protein E; SMART: AAA ATPase; type II secretion system protein E 614539..615516 Lactobacillus reuteri DSM 20016 5188976 YP_001271159.1 CDS Lreu_0554 NC_009513.1 615470 616504 D PFAM: type II secretion system protein; type II secretion system protein 615470..616504 Lactobacillus reuteri DSM 20016 5188857 YP_001271160.1 CDS Lreu_0555 NC_009513.1 616504 616815 D competence protein ComGC-like protein 616504..616815 Lactobacillus reuteri DSM 20016 5189745 YP_001271161.1 CDS Lreu_0556 NC_009513.1 616812 617246 D hypothetical protein 616812..617246 Lactobacillus reuteri DSM 20016 5188993 YP_001271162.1 CDS Lreu_0557 NC_009513.1 617233 617523 D hypothetical protein 617233..617523 Lactobacillus reuteri DSM 20016 5190169 YP_001271163.1 CDS Lreu_0558 NC_009513.1 617520 617951 D hypothetical protein 617520..617951 Lactobacillus reuteri DSM 20016 5189874 YP_001271164.1 CDS Lreu_0559 NC_009513.1 618366 619199 D adenine-specific DNA methylase-like protein 618366..619199 Lactobacillus reuteri DSM 20016 5189721 YP_001271165.1 CDS Lreu_0560 NC_009513.1 619213 620409 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 619213..620409 Lactobacillus reuteri DSM 20016 5189605 YP_001271166.1 CDS Lreu_0561 NC_009513.1 620524 621132 D phosphoesterase or phosphohydrolase-like protein 620524..621132 Lactobacillus reuteri DSM 20016 5189525 YP_001271167.1 CDS Lreu_0562 NC_009513.1 621153 621698 D PFAM: protein of unknown function DUF1027; hypothetical protein 621153..621698 Lactobacillus reuteri DSM 20016 5188725 YP_001271168.1 CDS Lreu_0563 NC_009513.1 621707 622477 D TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 621707..622477 Lactobacillus reuteri DSM 20016 5189936 YP_001271169.1 CDS Lreu_0564 NC_009513.1 622461 623114 D TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; hypothetical protein 622461..623114 Lactobacillus reuteri DSM 20016 5189940 YP_001271170.1 CDS Lreu_0565 NC_009513.1 623082 623729 R PFAM: SNARE associated Golgi protein; hypothetical protein complement(623082..623729) Lactobacillus reuteri DSM 20016 5189390 YP_001271171.1 CDS Lreu_0566 NC_009513.1 631363 631854 R hypothetical protein complement(631363..631854) Lactobacillus reuteri DSM 20016 5189781 YP_001271172.1 CDS Lreu_0567 NC_009513.1 632102 632503 D PFAM: arsenate reductase and related; arsenate reductase-like protein 632102..632503 Lactobacillus reuteri DSM 20016 5189828 YP_001271173.1 CDS Lreu_0568 NC_009513.1 632629 633300 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 632629..633300 Lactobacillus reuteri DSM 20016 5188792 YP_001271174.1 CDS Lreu_0569 NC_009513.1 633384 634418 D PFAM: Competence CoiA family protein; competence CoiA family protein 633384..634418 Lactobacillus reuteri DSM 20016 5189824 YP_001271175.1 CDS Lreu_0570 NC_009513.1 634420 635796 D PFAM: peptidase U34, dipeptidase; peptidase U34, dipeptidase 634420..635796 Lactobacillus reuteri DSM 20016 5189555 YP_001271176.1 CDS Lreu_0571 NC_009513.1 635868 636506 R hypothetical protein complement(635868..636506) Lactobacillus reuteri DSM 20016 5188964 YP_001271177.1 CDS Lreu_0572 NC_009513.1 636671 637324 D PFAM: RelA/SpoT domain protein; RelA/SpoT domain-containing protein 636671..637324 Lactobacillus reuteri DSM 20016 5189596 YP_001271178.1 CDS ppnK NC_009513.1 637328 638140 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 637328..638140 Lactobacillus reuteri DSM 20016 5189908 YP_001271179.1 CDS Lreu_0574 NC_009513.1 638140 639045 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RluA family pseudouridine synthase 638140..639045 Lactobacillus reuteri DSM 20016 5189218 YP_001271180.1 CDS Lreu_0576 NC_009513.1 646444 646800 R PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein complement(646444..646800) Lactobacillus reuteri DSM 20016 5189579 YP_001271181.1 CDS Lreu_0577 NC_009513.1 646790 646978 R hypothetical protein complement(646790..646978) Lactobacillus reuteri DSM 20016 5188660 YP_001271182.1 CDS Lreu_0578 NC_009513.1 647399 648427 R 6-phosphogluconolactonase complement(647399..648427) Lactobacillus reuteri DSM 20016 5190103 YP_001271183.1 CDS Lreu_0579 NC_009513.1 648542 649399 D PFAM: Methyltransferase type 11; type 11 methyltransferase 648542..649399 Lactobacillus reuteri DSM 20016 5189687 YP_001271184.1 CDS Lreu_0580 NC_009513.1 649571 650080 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase 649571..650080 Lactobacillus reuteri DSM 20016 5189773 YP_001271185.1 CDS Lreu_0581 NC_009513.1 650102 652432 D PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; cell division protein FtsK 650102..652432 Lactobacillus reuteri DSM 20016 5188863 YP_001271186.1 CDS Lreu_0582 NC_009513.1 652494 652640 R hypothetical protein complement(652494..652640) Lactobacillus reuteri DSM 20016 5188962 YP_001271187.1 CDS Lreu_0583 NC_009513.1 652715 653095 D hypothetical protein 652715..653095 Lactobacillus reuteri DSM 20016 5189500 YP_001271188.1 CDS Lreu_0584 NC_009513.1 653384 653812 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 653384..653812 Lactobacillus reuteri DSM 20016 5189539 YP_001271189.1 CDS mraW NC_009513.1 653828 654784 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 653828..654784 Lactobacillus reuteri DSM 20016 5188800 YP_001271190.1 CDS Lreu_0586 NC_009513.1 654792 655163 D TIGRFAM: cell division protein FtsL; PFAM: Septum formation initiator; cell division protein FtsL 654792..655163 Lactobacillus reuteri DSM 20016 5189819 YP_001271191.1 CDS Lreu_0587 NC_009513.1 655163 657322 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein; peptidoglycan glycosyltransferase 655163..657322 Lactobacillus reuteri DSM 20016 5189422 YP_001271192.1 CDS mraY NC_009513.1 657347 658318 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 657347..658318 Lactobacillus reuteri DSM 20016 5189950 YP_001271193.1 CDS murD NC_009513.1 658331 659701 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 658331..659701 Lactobacillus reuteri DSM 20016 5189943 YP_001271194.1 CDS murG NC_009513.1 659703 660815 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 659703..660815 Lactobacillus reuteri DSM 20016 5188531 YP_001271195.1 CDS Lreu_0591 NC_009513.1 660843 661691 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; cell division protein FtsQ 660843..661691 Lactobacillus reuteri DSM 20016 5189518 YP_001271196.1 CDS Lreu_0592 NC_009513.1 661812 663185 D PFAM: cell division protein FtsA; cell division protein FtsA 661812..663185 Lactobacillus reuteri DSM 20016 5190158 YP_001271197.1 CDS Lreu_0593 NC_009513.1 663203 664450 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; cell division protein FtsZ 663203..664450 Lactobacillus reuteri DSM 20016 5189582 YP_001271198.1 CDS Lreu_0594 NC_009513.1 664520 664936 D PFAM: protein of unknown function DUF552; hypothetical protein 664520..664936 Lactobacillus reuteri DSM 20016 5190045 YP_001271199.1 CDS Lreu_0595 NC_009513.1 664955 665215 D PFAM: hypothetical protein; hypothetical protein 664955..665215 Lactobacillus reuteri DSM 20016 5189887 YP_001271200.1 CDS Lreu_0596 NC_009513.1 665238 666023 D PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 665238..666023 Lactobacillus reuteri DSM 20016 5189538 YP_001271201.1 CDS Lreu_0597 NC_009513.1 666045 666785 D PFAM: DivIVA family protein; DivIVA family protein 666045..666785 Lactobacillus reuteri DSM 20016 5189014 YP_001271202.1 CDS ileS NC_009513.1 666996 669878 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 666996..669878 Lactobacillus reuteri DSM 20016 5189657 YP_001271203.1 CDS Lreu_0599 NC_009513.1 669991 670194 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding protein family protein 669991..670194 Lactobacillus reuteri DSM 20016 5189764 YP_001271204.1 CDS Lreu_0600 NC_009513.1 670207 670758 D PFAM: NUDIX hydrolase; NUDIX hydrolase 670207..670758 Lactobacillus reuteri DSM 20016 5189926 YP_001271205.1 CDS Lreu_0601 NC_009513.1 670751 671020 D hypothetical protein 670751..671020 Lactobacillus reuteri DSM 20016 5188887 YP_001271206.1 CDS Lreu_0602 NC_009513.1 671036 671731 D PFAM: purine or other phosphorylase, family 1; methylthioadenosine nucleosidase 671036..671731 Lactobacillus reuteri DSM 20016 5189367 YP_001271207.1 CDS Lreu_0603 NC_009513.1 671751 672905 D PFAM: aminotransferase, class V; class V aminotransferase 671751..672905 Lactobacillus reuteri DSM 20016 5189648 YP_001271208.1 CDS Lreu_0604 NC_009513.1 672907 673245 D hypothetical protein 672907..673245 Lactobacillus reuteri DSM 20016 5189308 YP_001271209.1 CDS mnmA NC_009513.1 673353 674486 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 673353..674486 Lactobacillus reuteri DSM 20016 5189784 YP_001271210.1 CDS Lreu_0606 NC_009513.1 674623 675279 D PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 674623..675279 Lactobacillus reuteri DSM 20016 5189803 YP_001271211.1 CDS Lreu_0607 NC_009513.1 675292 675975 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 675292..675975 Lactobacillus reuteri DSM 20016 5188984 YP_001271212.1 CDS Lreu_0608 NC_009513.1 675997 678474 D TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; ATP-dependent RecD/TraA family DNA helicase 675997..678474 Lactobacillus reuteri DSM 20016 5189213 YP_001271213.1 CDS Lreu_0609 NC_009513.1 678544 679518 D TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 678544..679518 Lactobacillus reuteri DSM 20016 5188767 YP_001271214.1 CDS dapF NC_009513.1 679585 680586 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(679585..680586) Lactobacillus reuteri DSM 20016 5188985 YP_001271215.1 CDS Lreu_0611 NC_009513.1 680599 681957 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(680599..681957) Lactobacillus reuteri DSM 20016 5188819 YP_001271216.1 CDS Lreu_0612 NC_009513.1 682438 683748 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 682438..683748 Lactobacillus reuteri DSM 20016 5188944 YP_001271217.1 CDS Lreu_0613 NC_009513.1 683785 684495 D PFAM: transferase hexapeptide repeat containing protein; Tetrahydrodipicolinate succinyltransferase N-terminal domain protein; tetrahydrodipicolinate succinyltransferase domain-containing protein 683785..684495 Lactobacillus reuteri DSM 20016 5188779 YP_001271218.1 CDS Lreu_0614 NC_009513.1 684508 685653 D TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 684508..685653 Lactobacillus reuteri DSM 20016 5189880 YP_001271219.1 CDS Lreu_0615 NC_009513.1 685681 686604 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 685681..686604 Lactobacillus reuteri DSM 20016 5189395 YP_001271220.1 CDS Lreu_0616 NC_009513.1 686608 687387 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 686608..687387 Lactobacillus reuteri DSM 20016 5189533 YP_001271221.1 CDS Lreu_0617 NC_009513.1 687400 688584 D PFAM: aminotransferase, class I and II; aminotransferase 687400..688584 Lactobacillus reuteri DSM 20016 5190092 YP_001271222.1 CDS Lreu_0618 NC_009513.1 688604 689662 D TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate semialdehyde dehydrogenase 688604..689662 Lactobacillus reuteri DSM 20016 5190166 YP_001271223.1 CDS Lreu_0621 NC_009513.1 690969 692264 D PFAM: Gluconate transporter; Citrate transporter; citrate transporter 690969..692264 Lactobacillus reuteri DSM 20016 5188545 YP_001271224.1 CDS Lreu_0622 NC_009513.1 692283 693434 D PFAM: glycerate kinase; glycerate kinase 692283..693434 Lactobacillus reuteri DSM 20016 5189568 YP_001271225.1 CDS Lreu_0623 NC_009513.1 693823 694173 D hypothetical protein 693823..694173 Lactobacillus reuteri DSM 20016 5189583 YP_001271226.1 CDS Lreu_0624 NC_009513.1 694166 694462 D hypothetical protein 694166..694462 Lactobacillus reuteri DSM 20016 5189576 YP_001271227.1 CDS Lreu_0625 NC_009513.1 694632 696032 D PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; NLP/P60 protein 694632..696032 Lactobacillus reuteri DSM 20016 5189076 YP_001271228.1 CDS Lreu_0626 NC_009513.1 696185 696388 D hypothetical protein 696185..696388 Lactobacillus reuteri DSM 20016 5189554 YP_001271229.1 CDS Lreu_0627 NC_009513.1 696461 697408 R PFAM: diacylglycerol kinase, catalytic region; diacylglycerol kinase catalytic protein complement(696461..697408) Lactobacillus reuteri DSM 20016 5189859 YP_001271230.1 CDS Lreu_0628 NC_009513.1 697542 697754 R PFAM: protein of unknown function DUF1447; hypothetical protein complement(697542..697754) Lactobacillus reuteri DSM 20016 5190037 YP_001271231.1 CDS Lreu_0629 NC_009513.1 697890 698366 D hypothetical protein 697890..698366 Lactobacillus reuteri DSM 20016 5189489 YP_001271232.1 CDS def NC_009513.1 698419 698979 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(698419..698979) Lactobacillus reuteri DSM 20016 5189677 YP_001271233.1 CDS Lreu_0631 NC_009513.1 699235 700341 D PFAM: dehydrogenase, E1 component; pyruvate dehydrogenase 699235..700341 Lactobacillus reuteri DSM 20016 5189580 YP_001271234.1 CDS Lreu_0632 NC_009513.1 700344 701321 D PFAM: Transketolase, central region; Transketolase domain protein; transketolase domain-containing protein 700344..701321 Lactobacillus reuteri DSM 20016 5188968 YP_001271235.1 CDS Lreu_0633 NC_009513.1 701353 702687 D PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoyllysine-residue succinyltransferase 701353..702687 Lactobacillus reuteri DSM 20016 5189864 YP_001271236.1 CDS Lreu_0634 NC_009513.1 702691 704118 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 702691..704118 Lactobacillus reuteri DSM 20016 5188859 YP_001271237.1 CDS Lreu_0635 NC_009513.1 704260 704568 D PFAM: protein of unknown function UPF0223; hypothetical protein 704260..704568 Lactobacillus reuteri DSM 20016 5189620 YP_001271238.1 CDS Lreu_0636 NC_009513.1 704561 705334 D PFAM: inositol monophosphatase; inositol-phosphate phosphatase 704561..705334 Lactobacillus reuteri DSM 20016 5189916 YP_001271239.1 CDS Lreu_0637 NC_009513.1 705441 707285 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; GTP-binding protein, HSR1-related; elongation factor Tu, domain 2 protein; GTP-binding protein TypA 705441..707285 Lactobacillus reuteri DSM 20016 5189942 YP_001271240.1 CDS Lreu_0638 NC_009513.1 707379 708602 D PFAM: cell cycle protein; cell cycle protein 707379..708602 Lactobacillus reuteri DSM 20016 5188326 YP_001271241.1 CDS Lreu_0639 NC_009513.1 708595 708879 D hypothetical protein 708595..708879 Lactobacillus reuteri DSM 20016 5188805 YP_001271242.1 CDS Lreu_0640 NC_009513.1 708876 709439 D TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein 95; methyltransferase 708876..709439 Lactobacillus reuteri DSM 20016 5189549 YP_001271243.1 CDS coaD NC_009513.1 709439 709960 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 709439..709960 Lactobacillus reuteri DSM 20016 5188183 YP_001271244.1 CDS Lreu_0642 NC_009513.1 709944 710996 D PDZ domain-containing protein 709944..710996 Lactobacillus reuteri DSM 20016 5188826 YP_001271245.1 CDS Lreu_0643 NC_009513.1 711090 711722 D TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA 711090..711722 Lactobacillus reuteri DSM 20016 5189385 YP_001271246.1 CDS Lreu_0644 NC_009513.1 711786 712271 D TIGRFAM: ComE operon protein 2; PFAM: CMP/dCMP deaminase, zinc-binding; ComE operon protein 2 711786..712271 Lactobacillus reuteri DSM 20016 5188732 YP_001271247.1 CDS Lreu_0645 NC_009513.1 712419 714548 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 712419..714548 Lactobacillus reuteri DSM 20016 5189262 YP_001271248.1 CDS Lreu_0646 NC_009513.1 714518 715549 D TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 714518..715549 Lactobacillus reuteri DSM 20016 5189461 YP_001271249.1 CDS rpsT NC_009513.1 715644 715898 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(715644..715898) Lactobacillus reuteri DSM 20016 5189634 YP_001271250.1 CDS rpsO NC_009513.1 716160 716429 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 716160..716429 Lactobacillus reuteri DSM 20016 5188331 YP_001271251.1 CDS Lreu_0649 NC_009513.1 716610 718391 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein 716610..718391 Lactobacillus reuteri DSM 20016 5189612 YP_001271252.1 CDS Lreu_0650 NC_009513.1 718508 719413 D hypothetical protein 718508..719413 Lactobacillus reuteri DSM 20016 5189923 YP_001271253.1 CDS tuf NC_009513.1 719592 720782 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 719592..720782 Lactobacillus reuteri DSM 20016 5188704 YP_001271254.1 CDS tig NC_009513.1 720978 722288 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 720978..722288 Lactobacillus reuteri DSM 20016 5189175 YP_001271255.1 CDS clpX NC_009513.1 722464 723714 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 722464..723714 Lactobacillus reuteri DSM 20016 5188199 YP_001271256.1 CDS engB NC_009513.1 723732 724322 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 723732..724322 Lactobacillus reuteri DSM 20016 5188812 YP_001271257.1 CDS Lreu_0655 NC_009513.1 724324 724623 D PFAM: MazG nucleotide pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase 724324..724623 Lactobacillus reuteri DSM 20016 5190083 YP_001271258.1 CDS Lreu_0656 NC_009513.1 724667 724804 R hypothetical protein complement(724667..724804) Lactobacillus reuteri DSM 20016 5189511 YP_001271259.1 CDS uvrC NC_009513.1 724948 726759 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 724948..726759 Lactobacillus reuteri DSM 20016 5189028 YP_001271260.1 CDS Lreu_0658 NC_009513.1 726824 728140 D TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; GTP1/OBG-like; GTP-binding protein Obg/CgtA 726824..728140 Lactobacillus reuteri DSM 20016 5189056 YP_001271261.1 CDS Lreu_0659 NC_009513.1 728173 729102 D TIGRFAM: ribonuclease Z; PFAM: beta-lactamase domain protein; ribonuclease Z 728173..729102 Lactobacillus reuteri DSM 20016 5189558 YP_001271262.1 CDS Lreu_0660 NC_009513.1 729099 729953 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 729099..729953 Lactobacillus reuteri DSM 20016 5189804 YP_001271263.1 CDS Lreu_0661 NC_009513.1 730093 730560 D PFAM: phosphoesterase, RecJ domain protein; phosphoesterase domain-containing protein 730093..730560 Lactobacillus reuteri DSM 20016 5189522 YP_001271264.1 CDS Lreu_0662 NC_009513.1 730574 730894 D hypothetical protein 730574..730894 Lactobacillus reuteri DSM 20016 5189947 YP_001271265.1 CDS Lreu_0663 NC_009513.1 731014 731286 D hypothetical protein 731014..731286 Lactobacillus reuteri DSM 20016 5189711 YP_001271266.1 CDS Lreu_0664 NC_009513.1 731304 731804 D hypothetical protein 731304..731804 Lactobacillus reuteri DSM 20016 5188784 YP_001271267.1 CDS Lreu_0665 NC_009513.1 731830 733221 D TIGRFAM: phage/plasmid primase, P4 family; P4 family phage/plasmid primase 731830..733221 Lactobacillus reuteri DSM 20016 5188145 YP_001271268.1 CDS Lreu_0666 NC_009513.1 733651 734010 D TIGRFAM: phage head-tail adaptor, putative; phage head-tail adaptor 733651..734010 Lactobacillus reuteri DSM 20016 5189408 YP_001271269.1 CDS Lreu_0667 NC_009513.1 734025 734432 D hypothetical protein 734025..734432 Lactobacillus reuteri DSM 20016 5189595 YP_001271270.1 CDS Lreu_0668 NC_009513.1 734436 734960 D PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 734436..734960 Lactobacillus reuteri DSM 20016 5189465 YP_001271271.1 CDS Lreu_0669 NC_009513.1 735307 735771 D TIGRFAM: phage terminase, small subunit, putative, P27 family; PFAM: phage terminase, small subunit, putative, P27; P27 family phage terminase small subunit 735307..735771 Lactobacillus reuteri DSM 20016 5188829 YP_001271272.1 CDS Lreu_0670 NC_009513.1 735771 737480 D PFAM: phage Terminase; phage terminase 735771..737480 Lactobacillus reuteri DSM 20016 5189843 YP_001271273.1 CDS Lreu_0671 NC_009513.1 737645 738763 D TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; HK97 family phage portal protein 737645..738763 Lactobacillus reuteri DSM 20016 5189608 YP_001271274.1 CDS Lreu_0672 NC_009513.1 738741 740261 D TIGRFAM: phage prohead protease, HK97 family; phage major capsid protein, HK97 family; PFAM: peptidase U35, phage prohead HK97; phage major capsid protein, HK97; HK97 family phage major capsid protein 738741..740261 Lactobacillus reuteri DSM 20016 5188324 YP_001271275.1 CDS Lreu_0673 NC_009513.1 740318 740740 D TIGRFAM: phage transcriptional regulator, RinA family; RinA family phage transcriptional regulator 740318..740740 Lactobacillus reuteri DSM 20016 5188739 YP_001271276.1 CDS Lreu_0674 NC_009513.1 740756 741034 D TIGRFAM: uncharacterized phage protein (possible DNA packaging); PFAM: Uncharacterized phage protein (possible DNA packaging); phage protein DNA packaging protein 740756..741034 Lactobacillus reuteri DSM 20016 5190039 YP_001271277.1 CDS Lreu_0675 NC_009513.1 742062 742730 D PFAM: ribonuclease H; RNase HI 742062..742730 Lactobacillus reuteri DSM 20016 5189708 YP_001271278.1 CDS Lreu_0676 NC_009513.1 742756 743913 D TIGRFAM: hydroxymethylglutaryl-CoA synthase; PFAM: Hydroxymethylglutaryl-coenzyme A synthase, N-terminal domain; Hydroxymethylglutaryl-coenzyme A synthase C terminal domain protein; hydroxymethylglutaryl-CoA synthase 742756..743913 Lactobacillus reuteri DSM 20016 5189557 YP_001271279.1 CDS Lreu_0677 NC_009513.1 743954 744580 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(743954..744580) Lactobacillus reuteri DSM 20016 5188992 YP_001271280.1 CDS Lreu_0678 NC_009513.1 744709 744960 D PFAM: protein of unknown function DUF896; hypothetical protein 744709..744960 Lactobacillus reuteri DSM 20016 5189941 YP_001271281.1 CDS Lreu_0679 NC_009513.1 745049 745261 D PFAM: protein of unknown function UPF0154; hypothetical protein 745049..745261 Lactobacillus reuteri DSM 20016 5188918 YP_001271282.1 CDS Lreu_0680 NC_009513.1 745305 745943 R PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(745305..745943) Lactobacillus reuteri DSM 20016 5189528 YP_001271283.1 CDS Lreu_0681 NC_009513.1 746038 746793 D O-methyltransferase-like protein 746038..746793 Lactobacillus reuteri DSM 20016 5189825 YP_001271284.1 CDS Lreu_0682 NC_009513.1 746783 747073 D PFAM: Excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 746783..747073 Lactobacillus reuteri DSM 20016 5189927 YP_001271285.1 CDS Lreu_0683 NC_009513.1 747075 748067 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 747075..748067 Lactobacillus reuteri DSM 20016 5189932 YP_001271286.1 CDS rpsB NC_009513.1 748230 749018 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 748230..749018 Lactobacillus reuteri DSM 20016 5188783 YP_001271287.1 CDS tsf NC_009513.1 749117 749992 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 749117..749992 Lactobacillus reuteri DSM 20016 5189756 YP_001271288.1 CDS pyrH NC_009513.1 750074 750796 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 750074..750796 Lactobacillus reuteri DSM 20016 5189808 YP_001271289.1 CDS frr NC_009513.1 750801 751364 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 750801..751364 Lactobacillus reuteri DSM 20016 5188387 YP_001271290.1 CDS Lreu_0688 NC_009513.1 751860 753032 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase 751860..753032 Lactobacillus reuteri DSM 20016 5189543 YP_001271291.1 CDS Lreu_0689 NC_009513.1 753491 753949 D PFAM: transposase IS200-family protein; transposase IS200-family protein 753491..753949 Lactobacillus reuteri DSM 20016 5189602 YP_001271292.1 CDS Lreu_0690 NC_009513.1 754218 755030 D TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 754218..755030 Lactobacillus reuteri DSM 20016 5188862 YP_001271293.1 CDS Lreu_0691 NC_009513.1 755050 755835 D PFAM: phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 755050..755835 Lactobacillus reuteri DSM 20016 5188927 YP_001271294.1 CDS Lreu_0692 NC_009513.1 755858 757132 D TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; membrane-associated zinc metalloprotease 755858..757132 Lactobacillus reuteri DSM 20016 5189424 YP_001271295.1 CDS Lreu_0693 NC_009513.1 757161 758894 D TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; prolyl-tRNA synthetase 757161..758894 Lactobacillus reuteri DSM 20016 5188806 YP_001271296.1 CDS polC NC_009513.1 758970 763301 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 758970..763301 Lactobacillus reuteri DSM 20016 5189546 YP_001271297.1 CDS Lreu_0695 NC_009513.1 763435 763908 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 763435..763908 Lactobacillus reuteri DSM 20016 5189644 YP_001271298.1 CDS Lreu_0696 NC_009513.1 763929 765116 D TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA N-terminal domain protein; SMART: KH domain protein; NusA antitermination factor 763929..765116 Lactobacillus reuteri DSM 20016 5188645 YP_001271299.1 CDS Lreu_0697 NC_009513.1 765145 765447 D PFAM: protein of unknown function DUF448; hypothetical protein 765145..765447 Lactobacillus reuteri DSM 20016 5188265 YP_001271300.1 CDS Lreu_0698 NC_009513.1 765434 765745 D PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; 50S ribosomal protein L7AE 765434..765745 Lactobacillus reuteri DSM 20016 5188707 YP_001271301.1 CDS infB NC_009513.1 765759 768017 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 765759..768017 Lactobacillus reuteri DSM 20016 5189299 YP_001271302.1 CDS rbfA NC_009513.1 768037 768396 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 768037..768396 Lactobacillus reuteri DSM 20016 5188671 YP_001271303.1 CDS truB NC_009513.1 768594 769499 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 768594..769499 Lactobacillus reuteri DSM 20016 5188325 YP_001271304.1 CDS Lreu_0702 NC_009513.1 769512 770459 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; riboflavin kinase/FMN adenylyltransferase 769512..770459 Lactobacillus reuteri DSM 20016 5189069 YP_001271305.1 CDS Lreu_0703 NC_009513.1 770520 770891 R hypothetical protein complement(770520..770891) Lactobacillus reuteri DSM 20016 5189098 YP_001271306.1 CDS hrcA NC_009513.1 771012 772064 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 771012..772064 Lactobacillus reuteri DSM 20016 5189045 YP_001271307.1 CDS Lreu_0705 NC_009513.1 772077 772649 D PFAM: GrpE protein; GrpE protein HSP-70 cofactor 772077..772649 Lactobacillus reuteri DSM 20016 5189387 YP_001271308.1 CDS dnaK NC_009513.1 772674 774539 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 772674..774539 Lactobacillus reuteri DSM 20016 5189643 YP_001271309.1 CDS Lreu_0707 NC_009513.1 774668 775819 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 774668..775819 Lactobacillus reuteri DSM 20016 5188261 YP_001271310.1 CDS Lreu_0708 NC_009513.1 775950 777785 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 775950..777785 Lactobacillus reuteri DSM 20016 5189084 YP_001271311.1 CDS Lreu_0709 NC_009513.1 777936 779096 R PFAM: phage integrase family protein; phage integrase family protein complement(777936..779096) Lactobacillus reuteri DSM 20016 5189293 YP_001271312.1 CDS Lreu_0710 NC_009513.1 779220 779954 R hypothetical protein complement(779220..779954) Lactobacillus reuteri DSM 20016 5188685 YP_001271313.1 CDS Lreu_0711 NC_009513.1 780247 780696 R hypothetical protein complement(780247..780696) Lactobacillus reuteri DSM 20016 5188392 YP_001271314.1 CDS Lreu_0712 NC_009513.1 780795 781253 R hypothetical protein complement(780795..781253) Lactobacillus reuteri DSM 20016 5189144 YP_001271315.1 CDS Lreu_0714 NC_009513.1 782298 783713 D PFAM: peptidase U34, dipeptidase; peptidase U34, dipeptidase 782298..783713 Lactobacillus reuteri DSM 20016 5189603 YP_001271316.1 CDS Lreu_0715 NC_009513.1 783786 784862 D PFAM: Malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase 783786..784862 Lactobacillus reuteri DSM 20016 5189311 YP_001271317.1 CDS Lreu_0716 NC_009513.1 785096 786055 R TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; malate dehydrogenase (NAD) complement(785096..786055) Lactobacillus reuteri DSM 20016 5189326 YP_001271318.1 CDS Lreu_0717 NC_009513.1 786505 786843 D hypothetical protein 786505..786843 Lactobacillus reuteri DSM 20016 5189269 YP_001271319.1 CDS prmA NC_009513.1 786921 787880 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 786921..787880 Lactobacillus reuteri DSM 20016 5189223 YP_001271320.1 CDS Lreu_0719 NC_009513.1 787881 788621 D PFAM: protein of unknown function DUF558; hypothetical protein 787881..788621 Lactobacillus reuteri DSM 20016 5189279 YP_001271321.1 CDS Lreu_0720 NC_009513.1 788700 789035 D hypothetical protein 788700..789035 Lactobacillus reuteri DSM 20016 5188605 YP_001271322.1 CDS Lreu_0721 NC_009513.1 789054 791291 D TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 789054..791291 Lactobacillus reuteri DSM 20016 5189601 YP_001271323.1 CDS Lreu_0722 NC_009513.1 791302 791739 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 791302..791739 Lactobacillus reuteri DSM 20016 5189312 YP_001271324.1 CDS Lreu_0723 NC_009513.1 791897 792745 R PFAM: aminoglycoside phosphotransferase; fructosamine kinase; aminoglycoside phosphotransferase complement(791897..792745) Lactobacillus reuteri DSM 20016 5189812 YP_001271325.1 CDS aspS NC_009513.1 793127 794929 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 793127..794929 Lactobacillus reuteri DSM 20016 5189907 YP_001271326.1 CDS Lreu_0725 NC_009513.1 795158 795616 D PFAM: transposase IS200-family protein; transposase IS200-family protein 795158..795616 Lactobacillus reuteri DSM 20016 5189088 YP_001271327.1 CDS Lreu_0726 NC_009513.1 795756 796499 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(795756..796499) Lactobacillus reuteri DSM 20016 5189276 YP_001271328.1 CDS Lreu_0727 NC_009513.1 796489 798000 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; extracellular solute-binding protein, family 3; polar amino acid ABC transporter inner membrane protein complement(796489..798000) Lactobacillus reuteri DSM 20016 5189219 YP_001271329.1 CDS rpsU NC_009513.1 798300 798491 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 798300..798491 Lactobacillus reuteri DSM 20016 5188345 YP_001271330.1 CDS Lreu_0729 NC_009513.1 798551 798997 D PFAM: GatB/Yqey domain protein; GatB/Yqey domain-containing protein 798551..798997 Lactobacillus reuteri DSM 20016 5189283 YP_001271331.1 CDS Lreu_0730 NC_009513.1 799117 800094 D PFAM: Choloylglycine hydrolase; choloylglycine hydrolase 799117..800094 Lactobacillus reuteri DSM 20016 5189358 YP_001271332.1 CDS Lreu_0731 NC_009513.1 800254 801486 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 800254..801486 Lactobacillus reuteri DSM 20016 5189344 YP_001271333.1 CDS Lreu_0732 NC_009513.1 801476 802861 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 801476..802861 Lactobacillus reuteri DSM 20016 5189935 YP_001271334.1 CDS Lreu_0733 NC_009513.1 802990 803562 D PFAM: BioY protein; BioY protein 802990..803562 Lactobacillus reuteri DSM 20016 5189230 YP_001271335.1 CDS Lreu_0734 NC_009513.1 803568 804539 D TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; biotin--acetyl-CoA-carboxylase ligase 803568..804539 Lactobacillus reuteri DSM 20016 5189158 YP_001271336.1 CDS Lreu_0735 NC_009513.1 804639 805646 D PFAM: PhoH family protein; PhoH family protein 804639..805646 Lactobacillus reuteri DSM 20016 5188162 YP_001271337.1 CDS Lreu_0736 NC_009513.1 805646 806125 D PFAM: protein of unknown function UPF0054; hypothetical protein 805646..806125 Lactobacillus reuteri DSM 20016 5189177 YP_001271338.1 CDS Lreu_0737 NC_009513.1 806109 806504 D PFAM: diacylglycerol kinase; diacylglycerol kinase 806109..806504 Lactobacillus reuteri DSM 20016 5188299 YP_001271339.1 CDS Lreu_0738 NC_009513.1 806516 807421 D TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; Miro domain protein; GTP-binding protein Era 806516..807421 Lactobacillus reuteri DSM 20016 5189226 YP_001271340.1 CDS Lreu_0739 NC_009513.1 807437 808222 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; DNA replication and repair protein RecO 807437..808222 Lactobacillus reuteri DSM 20016 5190086 YP_001271341.1 CDS glyQ NC_009513.1 808483 809469 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 808483..809469 Lactobacillus reuteri DSM 20016 5188485 YP_001271342.1 CDS glyS NC_009513.1 809471 811546 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 809471..811546 Lactobacillus reuteri DSM 20016 5188839 YP_001271343.1 CDS Lreu_0742 NC_009513.1 811681 813546 D TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 811681..813546 Lactobacillus reuteri DSM 20016 5189778 YP_001271344.1 CDS Lreu_0743 NC_009513.1 813548 814690 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 813548..814690 Lactobacillus reuteri DSM 20016 5189913 YP_001271345.1 CDS Lreu_0744 NC_009513.1 814888 816072 D PFAM: aminotransferase, class I and II; aminotransferase 814888..816072 Lactobacillus reuteri DSM 20016 5189777 YP_001271346.1 CDS Lreu_0745 NC_009513.1 816142 817524 R hypothetical protein complement(816142..817524) Lactobacillus reuteri DSM 20016 5189841 YP_001271347.1 CDS Lreu_0746 NC_009513.1 817749 818456 D PFAM: protein of unknown function DUF633; hypothetical protein 817749..818456 Lactobacillus reuteri DSM 20016 5189100 YP_001271348.1 CDS Lreu_0747 NC_009513.1 818443 819267 D PFAM: protein of unknown function DUF34; hypothetical protein 818443..819267 Lactobacillus reuteri DSM 20016 5188368 YP_001271349.1 CDS Lreu_0748 NC_009513.1 819292 820542 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 819292..820542 Lactobacillus reuteri DSM 20016 5188689 YP_001271350.1 CDS Lreu_0749 NC_009513.1 820584 820826 R hypothetical protein complement(820584..820826) Lactobacillus reuteri DSM 20016 5189317 YP_001271351.1 CDS Lreu_0750 NC_009513.1 820909 824256 D TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III catalytic subunit, DnaE type 820909..824256 Lactobacillus reuteri DSM 20016 5188621 YP_001271352.1 CDS Lreu_0751 NC_009513.1 824442 825863 D TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; pyruvate kinase 824442..825863 Lactobacillus reuteri DSM 20016 5188644 YP_001271353.1 CDS Lreu_0752 NC_009513.1 826005 826886 D hypothetical protein 826005..826886 Lactobacillus reuteri DSM 20016 5188994 YP_001271354.1 CDS Lreu_0753 NC_009513.1 826886 827779 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; tyrosine recombinase XerD subunit 826886..827779 Lactobacillus reuteri DSM 20016 5188159 YP_001271355.1 CDS Lreu_0754 NC_009513.1 827793 828149 D hypothetical protein 827793..828149 Lactobacillus reuteri DSM 20016 5188998 YP_001271356.1 CDS Lreu_0755 NC_009513.1 828142 828933 D PFAM: chromosome segregation and condensation protein ScpA; condensin subunit ScpA 828142..828933 Lactobacillus reuteri DSM 20016 5188743 YP_001271357.1 CDS Lreu_0756 NC_009513.1 828896 829501 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; condensin subunit ScpB 828896..829501 Lactobacillus reuteri DSM 20016 5188850 YP_001271358.1 CDS Lreu_0757 NC_009513.1 829501 830217 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase B 829501..830217 Lactobacillus reuteri DSM 20016 5188878 YP_001271359.1 CDS Lreu_0758 NC_009513.1 830610 831188 D hypothetical protein 830610..831188 Lactobacillus reuteri DSM 20016 5188780 YP_001271360.1 CDS Lreu_0759 NC_009513.1 831289 832314 D hypothetical protein 831289..832314 Lactobacillus reuteri DSM 20016 5189405 YP_001271361.1 CDS Lreu_0760 NC_009513.1 832304 833743 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 832304..833743 Lactobacillus reuteri DSM 20016 5189797 YP_001271362.1 CDS Lreu_0761 NC_009513.1 833828 834400 D hypothetical protein 833828..834400 Lactobacillus reuteri DSM 20016 5189406 YP_001271363.1 CDS Lreu_0762 NC_009513.1 834474 835160 D TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 834474..835160 Lactobacillus reuteri DSM 20016 5189165 YP_001271364.1 CDS rpsA NC_009513.1 835233 836483 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 835233..836483 Lactobacillus reuteri DSM 20016 5188828 YP_001271365.1 CDS engA NC_009513.1 836713 838026 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 836713..838026 Lactobacillus reuteri DSM 20016 5188835 YP_001271366.1 CDS Lreu_0765 NC_009513.1 838236 838511 D PFAM: histone family protein DNA-binding protein; nucleoid protein Hbs 838236..838511 Lactobacillus reuteri DSM 20016 5188786 YP_001271367.1 CDS Lreu_0766 NC_009513.1 838647 839912 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; hypothetical protein 838647..839912 Lactobacillus reuteri DSM 20016 5188925 YP_001271368.1 CDS Lreu_0767 NC_009513.1 840038 841249 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 840038..841249 Lactobacillus reuteri DSM 20016 5188952 YP_001271369.1 CDS Lreu_0768 NC_009513.1 841251 843161 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 841251..843161 Lactobacillus reuteri DSM 20016 5188834 YP_001271370.1 CDS thyA NC_009513.1 843180 844142 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 843180..844142 Lactobacillus reuteri DSM 20016 5188966 YP_001271371.1 CDS Lreu_0770 NC_009513.1 844158 844646 D PFAM: dihydrofolate reductase region; dihydrofolate reductase 844158..844646 Lactobacillus reuteri DSM 20016 5189798 YP_001271372.1 CDS Lreu_0771 NC_009513.1 844635 845279 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; hemolysin III family channel protein complement(844635..845279) Lactobacillus reuteri DSM 20016 5189805 YP_001271373.1 CDS Lreu_0772 NC_009513.1 845458 846300 D TIGRFAM: degV family protein; PFAM: DegV family protein; degV family protein 845458..846300 Lactobacillus reuteri DSM 20016 5190012 YP_001271374.1 CDS Lreu_0773 NC_009513.1 846393 847319 D PFAM: lipolytic protein, G-D-S-L family; GDSL family lipase 846393..847319 Lactobacillus reuteri DSM 20016 5190074 YP_001271375.1 CDS Lreu_0774 NC_009513.1 847322 847924 D hypothetical protein 847322..847924 Lactobacillus reuteri DSM 20016 5190056 YP_001271376.1 CDS Lreu_0775 NC_009513.1 847943 848164 D PFAM: protein of unknown function DUF1250; hypothetical protein 847943..848164 Lactobacillus reuteri DSM 20016 5189498 YP_001271377.1 CDS Lreu_0776 NC_009513.1 848185 849057 D PFAM: GTP-binding protein, HSR1-related; GTP-binding protein YlqF 848185..849057 Lactobacillus reuteri DSM 20016 5189730 YP_001271378.1 CDS rnhB NC_009513.1 849050 849820 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 849050..849820 Lactobacillus reuteri DSM 20016 5189651 YP_001271379.1 CDS Lreu_0778 NC_009513.1 849871 850746 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA 849871..850746 Lactobacillus reuteri DSM 20016 5189642 YP_001271380.1 CDS Lreu_0779 NC_009513.1 850868 852988 D TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase I 850868..852988 Lactobacillus reuteri DSM 20016 5189822 YP_001271381.1 CDS Lreu_0780 NC_009513.1 853123 854001 D PFAM: Aldose 1-epimerase; aldose 1-epimerase 853123..854001 Lactobacillus reuteri DSM 20016 5189753 YP_001271382.1 CDS Lreu_0781 NC_009513.1 854043 854672 R PFAM: protein of unknown function DUF205; membrane protein complement(854043..854672) Lactobacillus reuteri DSM 20016 5190141 YP_001271383.1 CDS Lreu_0782 NC_009513.1 854883 856907 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 854883..856907 Lactobacillus reuteri DSM 20016 5190142 YP_001271384.1 CDS Lreu_0783 NC_009513.1 856926 859391 D TIGRFAM: DNA topoisomerase IV, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; DNA topoisomerase IV subunit A 856926..859391 Lactobacillus reuteri DSM 20016 5189827 YP_001271385.1 CDS Lreu_0784 NC_009513.1 859408 859875 D PFAM: NUDIX hydrolase; NUDIX hydrolase 859408..859875 Lactobacillus reuteri DSM 20016 5189678 YP_001271386.1 CDS Lreu_0785 NC_009513.1 859984 860919 D PFAM: phosphoesterase, RecJ domain protein; DHHA2 domain protein; inorganic diphosphatase 859984..860919 Lactobacillus reuteri DSM 20016 5190130 YP_001271387.1 CDS Lreu_0786 NC_009513.1 860952 861920 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(860952..861920) Lactobacillus reuteri DSM 20016 5189705 YP_001271388.1 CDS Lreu_0787 NC_009513.1 862129 862518 D hypothetical protein 862129..862518 Lactobacillus reuteri DSM 20016 5189998 YP_001271389.1 CDS Lreu_0789 NC_009513.1 863202 863696 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 863202..863696 Lactobacillus reuteri DSM 20016 5188810 YP_001271390.1 CDS Lreu_0790 NC_009513.1 863851 864234 R PFAM: protein of unknown function DUF322; hypothetical protein complement(863851..864234) Lactobacillus reuteri DSM 20016 5189813 YP_001271391.1 CDS Lreu_0791 NC_009513.1 864252 864443 R hypothetical protein complement(864252..864443) Lactobacillus reuteri DSM 20016 5190052 YP_001271392.1 CDS Lreu_0792 NC_009513.1 864458 865003 R hypothetical protein complement(864458..865003) Lactobacillus reuteri DSM 20016 5189373 YP_001271393.1 CDS Lreu_0793 NC_009513.1 865183 866712 R PFAM: carbohydrate kinase, FGGY; carbohydrate kinase FGGY complement(865183..866712) Lactobacillus reuteri DSM 20016 5190094 YP_001271394.1 CDS Lreu_0794 NC_009513.1 866763 867782 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator complement(866763..867782) Lactobacillus reuteri DSM 20016 5190077 YP_001271395.1 CDS Lreu_0795 NC_009513.1 867862 868998 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; gluconate transporter complement(867862..868998) Lactobacillus reuteri DSM 20016 5189823 YP_001271396.1 CDS Lreu_0796 NC_009513.1 869104 870369 R PFAM: Resolvase, N-terminal domain; Recombinase; recombinase complement(869104..870369) Lactobacillus reuteri DSM 20016 5189891 YP_001271397.1 CDS Lreu_0797 NC_009513.1 870837 871694 R hypothetical protein complement(870837..871694) Lactobacillus reuteri DSM 20016 5190146 YP_001271398.1 CDS Lreu_0798 NC_009513.1 871715 872236 R hypothetical protein complement(871715..872236) Lactobacillus reuteri DSM 20016 5189840 YP_001271399.1 CDS Lreu_0799 NC_009513.1 872250 872654 R hypothetical protein complement(872250..872654) Lactobacillus reuteri DSM 20016 5189564 YP_001271400.1 CDS Lreu_0800 NC_009513.1 872708 873112 R hypothetical protein complement(872708..873112) Lactobacillus reuteri DSM 20016 5189853 YP_001271401.1 CDS Lreu_0801 NC_009513.1 873129 873464 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(873129..873464) Lactobacillus reuteri DSM 20016 5189713 YP_001271402.1 CDS Lreu_0802 NC_009513.1 873625 873840 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 873625..873840 Lactobacillus reuteri DSM 20016 5189849 YP_001271403.1 CDS Lreu_0803 NC_009513.1 873859 874632 D PFAM: BRO domain protein domain protein; phage antirepressor protein; prophage antirepressor 873859..874632 Lactobacillus reuteri DSM 20016 5189530 YP_001271404.1 CDS Lreu_0804 NC_009513.1 874644 874772 D hypothetical protein 874644..874772 Lactobacillus reuteri DSM 20016 5188884 YP_001271405.1 CDS Lreu_0805 NC_009513.1 874792 874911 D hypothetical protein 874792..874911 Lactobacillus reuteri DSM 20016 5190011 YP_001271406.1 CDS Lreu_0806 NC_009513.1 874908 875111 D hypothetical protein 874908..875111 Lactobacillus reuteri DSM 20016 5188934 YP_001271407.1 CDS Lreu_0807 NC_009513.1 875108 875356 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 875108..875356 Lactobacillus reuteri DSM 20016 5189878 YP_001271408.1 CDS Lreu_0808 NC_009513.1 875334 875537 D hypothetical protein 875334..875537 Lactobacillus reuteri DSM 20016 5189873 YP_001271409.1 CDS Lreu_0809 NC_009513.1 875552 875728 D hypothetical protein 875552..875728 Lactobacillus reuteri DSM 20016 5190167 YP_001271410.1 CDS Lreu_0810 NC_009513.1 875728 876000 D SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 875728..876000 Lactobacillus reuteri DSM 20016 5190010 YP_001271411.1 CDS Lreu_0811 NC_009513.1 875993 876922 D PFAM: RecT protein; RecT protein 875993..876922 Lactobacillus reuteri DSM 20016 5190159 YP_001271412.1 CDS Lreu_0812 NC_009513.1 876906 877730 D hypothetical protein 876906..877730 Lactobacillus reuteri DSM 20016 5189883 YP_001271413.1 CDS Lreu_0813 NC_009513.1 877735 878592 D TIGRFAM: primosome, DnaD subunit; primosome subunit DnaD 877735..878592 Lactobacillus reuteri DSM 20016 5189361 YP_001271414.1 CDS Lreu_0814 NC_009513.1 878585 878914 D hypothetical protein 878585..878914 Lactobacillus reuteri DSM 20016 5189791 YP_001271415.1 CDS Lreu_0815 NC_009513.1 878911 879282 D hypothetical protein 878911..879282 Lactobacillus reuteri DSM 20016 5190097 YP_001271416.1 CDS Lreu_0816 NC_009513.1 879358 879636 D hypothetical protein 879358..879636 Lactobacillus reuteri DSM 20016 5189991 YP_001271417.1 CDS Lreu_0817 NC_009513.1 879633 879821 D hypothetical protein 879633..879821 Lactobacillus reuteri DSM 20016 5189898 YP_001271418.1 CDS Lreu_0818 NC_009513.1 879821 879973 D hypothetical protein 879821..879973 Lactobacillus reuteri DSM 20016 5189829 YP_001271419.1 CDS Lreu_0819 NC_009513.1 880017 880211 D hypothetical protein 880017..880211 Lactobacillus reuteri DSM 20016 5189606 YP_001271420.1 CDS Lreu_0820 NC_009513.1 880211 880471 D hypothetical protein 880211..880471 Lactobacillus reuteri DSM 20016 5188854 YP_001271421.1 CDS Lreu_0821 NC_009513.1 880471 880812 D hypothetical protein 880471..880812 Lactobacillus reuteri DSM 20016 5189586 YP_001271422.1 CDS Lreu_0822 NC_009513.1 880812 881000 D hypothetical protein 880812..881000 Lactobacillus reuteri DSM 20016 5189974 YP_001271423.1 CDS Lreu_0823 NC_009513.1 881008 881268 D hypothetical protein 881008..881268 Lactobacillus reuteri DSM 20016 5188978 YP_001271424.1 CDS Lreu_0824 NC_009513.1 881268 881579 D hypothetical protein 881268..881579 Lactobacillus reuteri DSM 20016 5189982 YP_001271425.1 CDS Lreu_0825 NC_009513.1 881554 881649 D hypothetical protein 881554..881649 Lactobacillus reuteri DSM 20016 5189986 YP_001271426.1 CDS Lreu_0826 NC_009513.1 881642 881785 D hypothetical protein 881642..881785 Lactobacillus reuteri DSM 20016 5189847 YP_001271427.1 CDS Lreu_0827 NC_009513.1 881867 882289 D hypothetical protein 881867..882289 Lactobacillus reuteri DSM 20016 5189826 YP_001271428.1 CDS Lreu_0828 NC_009513.1 883237 883443 D hypothetical protein 883237..883443 Lactobacillus reuteri DSM 20016 5190137 YP_001271429.1 CDS Lreu_0829 NC_009513.1 883531 884199 D PFAM: phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 883531..884199 Lactobacillus reuteri DSM 20016 5189869 YP_001271430.1 CDS Lreu_0830 NC_009513.1 884199 884624 D hypothetical protein 884199..884624 Lactobacillus reuteri DSM 20016 5189562 YP_001271431.1 CDS Lreu_0831 NC_009513.1 884638 885417 D SMART: ParB domain protein nuclease; nuclease 884638..885417 Lactobacillus reuteri DSM 20016 5189509 YP_001271432.1 CDS Lreu_0832 NC_009513.1 885434 885937 D hypothetical protein 885434..885937 Lactobacillus reuteri DSM 20016 5189600 YP_001271433.1 CDS Lreu_0833 NC_009513.1 885912 887207 D TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: phage terminase large subunit; protein of unknown function DUF1545; PBSX family phage terminase large subunit 885912..887207 Lactobacillus reuteri DSM 20016 5190122 YP_001271434.1 CDS Lreu_0834 NC_009513.1 887207 888868 D TIGRFAM: phage portal protein, SPP1 family; PFAM: phage portal protein, SPP1; SPP1 family phage portal protein 887207..888868 Lactobacillus reuteri DSM 20016 5189838 YP_001271435.1 CDS Lreu_0835 NC_009513.1 888868 889818 D TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; SPP1 family phage head morphogenesis protein 888868..889818 Lactobacillus reuteri DSM 20016 5190070 YP_001271436.1 CDS Lreu_0836 NC_009513.1 889829 890074 D hypothetical protein 889829..890074 Lactobacillus reuteri DSM 20016 5190161 YP_001271437.1 CDS Lreu_0837 NC_009513.1 890204 890857 D hypothetical protein 890204..890857 Lactobacillus reuteri DSM 20016 5189716 YP_001271438.1 CDS Lreu_0838 NC_009513.1 890872 891948 D hypothetical protein 890872..891948 Lactobacillus reuteri DSM 20016 5189905 YP_001271439.1 CDS Lreu_0839 NC_009513.1 891961 892326 D hypothetical protein 891961..892326 Lactobacillus reuteri DSM 20016 5189968 YP_001271440.1 CDS Lreu_0840 NC_009513.1 892326 892640 D hypothetical protein 892326..892640 Lactobacillus reuteri DSM 20016 5188960 YP_001271441.1 CDS Lreu_0841 NC_009513.1 892630 893190 D hypothetical protein 892630..893190 Lactobacillus reuteri DSM 20016 5190072 YP_001271442.1 CDS Lreu_0842 NC_009513.1 893199 893609 D hypothetical protein 893199..893609 Lactobacillus reuteri DSM 20016 5189918 YP_001271443.1 CDS Lreu_0843 NC_009513.1 893612 894259 D hypothetical protein 893612..894259 Lactobacillus reuteri DSM 20016 5190119 YP_001271444.1 CDS Lreu_0844 NC_009513.1 894279 894824 D hypothetical protein 894279..894824 Lactobacillus reuteri DSM 20016 5189166 YP_001271445.1 CDS Lreu_0845 NC_009513.1 894917 895096 D hypothetical protein 894917..895096 Lactobacillus reuteri DSM 20016 5190024 YP_001271446.1 CDS Lreu_0846 NC_009513.1 895100 898750 D PFAM: TMP repeat-containing protein; Lytic transglycosylase, catalytic; lytic transglycosylase 895100..898750 Lactobacillus reuteri DSM 20016 5189966 YP_001271447.1 CDS Lreu_0847 NC_009513.1 898747 899634 D PFAM: protein of unknown function DUF1306; hypothetical protein 898747..899634 Lactobacillus reuteri DSM 20016 5189336 YP_001271448.1 CDS Lreu_0848 NC_009513.1 899631 901862 D PFAM: peptidase M23B; peptidase M23B 899631..901862 Lactobacillus reuteri DSM 20016 5188872 YP_001271449.1 CDS Lreu_0849 NC_009513.1 901846 905427 D hypothetical protein 901846..905427 Lactobacillus reuteri DSM 20016 5190065 YP_001271450.1 CDS Lreu_0850 NC_009513.1 905420 905692 D hypothetical protein 905420..905692 Lactobacillus reuteri DSM 20016 5189882 YP_001271451.1 CDS Lreu_0851 NC_009513.1 905735 906007 D hypothetical protein 905735..906007 Lactobacillus reuteri DSM 20016 5189785 YP_001271452.1 CDS Lreu_0852 NC_009513.1 906020 907165 D PFAM: lipolytic protein, G-D-S-L family; GDSL family lipase 906020..907165 Lactobacillus reuteri DSM 20016 5190111 YP_001271453.1 CDS Lreu_0853 NC_009513.1 907168 908277 D hypothetical protein 907168..908277 Lactobacillus reuteri DSM 20016 5189955 YP_001271454.1 CDS Lreu_0854 NC_009513.1 908289 908693 D hypothetical protein 908289..908693 Lactobacillus reuteri DSM 20016 5189736 YP_001271455.1 CDS Lreu_0855 NC_009513.1 908686 908805 D hypothetical protein 908686..908805 Lactobacillus reuteri DSM 20016 5189933 YP_001271456.1 CDS Lreu_0856 NC_009513.1 908949 909395 D hypothetical protein 908949..909395 Lactobacillus reuteri DSM 20016 5189895 YP_001271457.1 CDS Lreu_0857 NC_009513.1 909434 910603 D hypothetical protein 909434..910603 Lactobacillus reuteri DSM 20016 5190162 YP_001271458.1 CDS Lreu_0858 NC_009513.1 910618 911067 D TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin, toxin secretion/phage lysis; toxin secretion/phage lysis holin 910618..911067 Lactobacillus reuteri DSM 20016 5189855 YP_001271459.1 CDS Lreu_0859 NC_009513.1 911057 912256 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase 911057..912256 Lactobacillus reuteri DSM 20016 5189637 YP_001271460.1 CDS Lreu_0860 NC_009513.1 912328 912495 R hypothetical protein complement(912328..912495) Lactobacillus reuteri DSM 20016 5189920 YP_001271461.1 CDS Lreu_0861 NC_009513.1 912508 914037 R PFAM: carbohydrate kinase, FGGY; carbohydrate kinase FGGY complement(912508..914037) Lactobacillus reuteri DSM 20016 5190101 YP_001271462.1 CDS Lreu_0862 NC_009513.1 914265 914798 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 914265..914798 Lactobacillus reuteri DSM 20016 5189786 YP_001271463.1 CDS Lreu_0863 NC_009513.1 914845 915111 R hypothetical protein complement(914845..915111) Lactobacillus reuteri DSM 20016 5189627 YP_001271464.1 CDS Lreu_0864 NC_009513.1 915306 915515 R hypothetical protein complement(915306..915515) Lactobacillus reuteri DSM 20016 5189462 YP_001271465.1 CDS Lreu_0865 NC_009513.1 915813 915935 D hypothetical protein 915813..915935 Lactobacillus reuteri DSM 20016 5189799 YP_001271466.1 CDS Lreu_0866 NC_009513.1 916309 918222 D TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: Amidase; surface protein from Gram-positive cocci, anchor region; cell wall anchor domain-containing protein 916309..918222 Lactobacillus reuteri DSM 20016 5190053 YP_001271467.1 CDS Lreu_0867 NC_009513.1 918304 918579 D hypothetical protein 918304..918579 Lactobacillus reuteri DSM 20016 5189854 YP_001271468.1 CDS Lreu_0868 NC_009513.1 918640 919131 R PFAM: protein of unknown function DUF805; hypothetical protein complement(918640..919131) Lactobacillus reuteri DSM 20016 5189959 YP_001271469.1 CDS Lreu_0869 NC_009513.1 919441 920973 D PFAM: N-6 DNA methylase; N-6 DNA methylase 919441..920973 Lactobacillus reuteri DSM 20016 5189901 YP_001271470.1 CDS Lreu_0870 NC_009513.1 920963 921550 D PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit 920963..921550 Lactobacillus reuteri DSM 20016 5190131 YP_001271471.1 CDS Lreu_0871 NC_009513.1 921471 922106 R PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit complement(921471..922106) Lactobacillus reuteri DSM 20016 5189792 YP_001271472.1 CDS Lreu_0872 NC_009513.1 922149 923123 D PFAM: phage integrase family protein; phage integrase family protein 922149..923123 Lactobacillus reuteri DSM 20016 5190073 YP_001271473.1 CDS Lreu_0873 NC_009513.1 923128 924255 D PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit 923128..924255 Lactobacillus reuteri DSM 20016 5189767 YP_001271474.1 CDS Lreu_0874 NC_009513.1 924309 927434 D TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 924309..927434 Lactobacillus reuteri DSM 20016 5189857 YP_001271475.1 CDS Lreu_0875 NC_009513.1 927491 927751 R XRE family plasmid maintenance system antidote protein complement(927491..927751) Lactobacillus reuteri DSM 20016 5189715 YP_001271476.1 CDS Lreu_0876 NC_009513.1 928086 930353 D hypothetical protein 928086..930353 Lactobacillus reuteri DSM 20016 5189995 YP_001271477.1 CDS rihA NC_009513.1 930805 931749 D Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 930805..931749 Lactobacillus reuteri DSM 20016 5190138 YP_001271478.1 CDS Lreu_0878 NC_009513.1 932095 933153 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 932095..933153 Lactobacillus reuteri DSM 20016 5188959 YP_001271479.1 CDS Lreu_0879 NC_009513.1 933146 933748 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 933146..933748 Lactobacillus reuteri DSM 20016 5190018 YP_001271480.1 CDS Lreu_0880 NC_009513.1 933748 934929 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; GTP cyclohydrolase II 933748..934929 Lactobacillus reuteri DSM 20016 5189150 YP_001271481.1 CDS ribH NC_009513.1 934932 935390 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 934932..935390 Lactobacillus reuteri DSM 20016 5188796 YP_001271482.1 CDS Lreu_0882 NC_009513.1 935436 936161 R PFAM: Ion transport protein; Ion transport 2 domain protein; Ion transport 2 domain-containing protein complement(935436..936161) Lactobacillus reuteri DSM 20016 5189769 YP_001271483.1 CDS Lreu_0883 NC_009513.1 936234 939122 R hypothetical protein complement(936234..939122) Lactobacillus reuteri DSM 20016 5189727 YP_001271484.1 CDS Lreu_0884 NC_009513.1 939291 940475 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 939291..940475 Lactobacillus reuteri DSM 20016 5190134 YP_001271485.1 CDS Lreu_0885 NC_009513.1 940542 941117 R TIGRFAM: RNA polymerase sigma-70; ECF subfamily RNA polymerase sigma-24 factor complement(940542..941117) Lactobacillus reuteri DSM 20016 5189726 YP_001271486.1 CDS Lreu_0886 NC_009513.1 941465 941839 R PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(941465..941839) Lactobacillus reuteri DSM 20016 5189444 YP_001271487.1 CDS Lreu_0887 NC_009513.1 941873 942694 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 941873..942694 Lactobacillus reuteri DSM 20016 5189151 YP_001271488.1 CDS Lreu_0888 NC_009513.1 942710 944131 D TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; o-succinylbenzoate--CoA ligase 942710..944131 Lactobacillus reuteri DSM 20016 5189709 YP_001271489.1 CDS Lreu_0889 NC_009513.1 944197 944355 R hypothetical protein complement(944197..944355) Lactobacillus reuteri DSM 20016 5189714 YP_001271490.1 CDS Lreu_0890 NC_009513.1 944362 946416 R TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; ferrous iron transport protein B complement(944362..946416) Lactobacillus reuteri DSM 20016 5190125 YP_001271491.1 CDS Lreu_0891 NC_009513.1 946785 947582 D TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 946785..947582 Lactobacillus reuteri DSM 20016 5189394 YP_001271492.1 CDS Lreu_0892 NC_009513.1 947594 948883 D TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; FeS assembly protein SufD 947594..948883 Lactobacillus reuteri DSM 20016 5189703 YP_001271493.1 CDS Lreu_0893 NC_009513.1 948864 950102 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; SufS subfamily cysteine desulfurase 948864..950102 Lactobacillus reuteri DSM 20016 5190081 YP_001271494.1 CDS Lreu_0894 NC_009513.1 950089 950550 D TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; NifU family SUF system FeS assembly protein 950089..950550 Lactobacillus reuteri DSM 20016 5190133 YP_001271495.1 CDS Lreu_0895 NC_009513.1 950543 951952 D TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; FeS assembly protein SufB 950543..951952 Lactobacillus reuteri DSM 20016 5190088 YP_001271496.1 CDS Lreu_0896 NC_009513.1 951985 952317 D PFAM: protein of unknown function DUF59; hypothetical protein 951985..952317 Lactobacillus reuteri DSM 20016 5190090 YP_001271497.1 CDS Lreu_0897 NC_009513.1 952334 953224 D PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 952334..953224 Lactobacillus reuteri DSM 20016 5189377 YP_001271498.1 CDS Lreu_0898 NC_009513.1 953276 953929 R PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator complement(953276..953929) Lactobacillus reuteri DSM 20016 5189980 YP_001271499.1 CDS Lreu_0899 NC_009513.1 954415 954651 D PFAM: cytochrome b5; cytochrome b5 954415..954651 Lactobacillus reuteri DSM 20016 5190100 YP_001271500.1 CDS Lreu_0900 NC_009513.1 954709 955521 R TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; cof family hydrolase complement(954709..955521) Lactobacillus reuteri DSM 20016 5189379 YP_001271501.1 CDS Lreu_0901 NC_009513.1 955666 957033 D PFAM: Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein 955666..957033 Lactobacillus reuteri DSM 20016 5189412 YP_001271502.1 CDS Lreu_0902 NC_009513.1 957052 957918 D PFAM: band 7 protein; hypothetical protein 957052..957918 Lactobacillus reuteri DSM 20016 5190062 YP_001271503.1 CDS Lreu_0903 NC_009513.1 957919 959682 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; signal transduction histidine kinase LytS 957919..959682 Lactobacillus reuteri DSM 20016 5190042 YP_001271504.1 CDS Lreu_0904 NC_009513.1 959663 960394 D PFAM: response regulator receiver; LytTr DNA-binding region; LytTR family two component transcriptional regulator 959663..960394 Lactobacillus reuteri DSM 20016 5190153 YP_001271505.1 CDS Lreu_0905 NC_009513.1 960599 961018 D PFAM: LrgA family protein; LrgA family protein 960599..961018 Lactobacillus reuteri DSM 20016 5190020 YP_001271506.1 CDS Lreu_0906 NC_009513.1 961011 961751 D PFAM: LrgB family protein; LrgB family protein 961011..961751 Lactobacillus reuteri DSM 20016 5190017 YP_001271507.1 CDS Lreu_0907 NC_009513.1 961779 962753 D TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; malate dehydrogenase (NAD) 961779..962753 Lactobacillus reuteri DSM 20016 5190120 YP_001271508.1 CDS Lreu_0909 NC_009513.1 963810 964829 R PFAM: regulatory protein, LacI; LacI family transcriptional regulator complement(963810..964829) Lactobacillus reuteri DSM 20016 5189049 YP_001271509.1 CDS Lreu_0910 NC_009513.1 964993 967182 D PFAM: glycoside hydrolase, clan GH-D; glycoside hydrolase 964993..967182 Lactobacillus reuteri DSM 20016 5189038 YP_001271510.1 CDS Lreu_0911 NC_009513.1 967358 967858 R PFAM: protein of unknown function DUF1440; hypothetical protein complement(967358..967858) Lactobacillus reuteri DSM 20016 5188695 YP_001271511.1 CDS Lreu_0912 NC_009513.1 967919 968965 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(967919..968965) Lactobacillus reuteri DSM 20016 5188589 YP_001271512.1 CDS Lreu_0913 NC_009513.1 968981 970108 R TIGRFAM: phosphomevalonate kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; phosphomevalonate kinase complement(968981..970108) Lactobacillus reuteri DSM 20016 5189572 YP_001271513.1 CDS Lreu_0914 NC_009513.1 970136 971107 R TIGRFAM: diphosphomevalonate decarboxylase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; diphosphomevalonate decarboxylase complement(970136..971107) Lactobacillus reuteri DSM 20016 5189963 YP_001271514.1 CDS Lreu_0915 NC_009513.1 971107 972057 R TIGRFAM: mevalonate kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; mevalonate kinase complement(971107..972057) Lactobacillus reuteri DSM 20016 5188481 YP_001271515.1 CDS Lreu_0916 NC_009513.1 972273 975137 D TIGRFAM: DNA polymerase III, epsilon subunit; DnaQ family exonuclease/DinG family helicase, putative; PFAM: helicase domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; helicase c2; DEAD-like helicases-like; DnaQ family exonuclease/DinG family helicase 972273..975137 Lactobacillus reuteri DSM 20016 5188474 YP_001271516.1 CDS Lreu_0917 NC_009513.1 975231 975749 D hypothetical protein 975231..975749 Lactobacillus reuteri DSM 20016 5188396 YP_001271517.1 CDS Lreu_0918 NC_009513.1 975833 976537 D TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; DNA replication protein DnaD 975833..976537 Lactobacillus reuteri DSM 20016 5188581 YP_001271518.1 CDS Lreu_0919 NC_009513.1 976560 977477 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 976560..977477 Lactobacillus reuteri DSM 20016 5189353 YP_001271519.1 CDS Lreu_0920 NC_009513.1 977554 979818 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein complement(977554..979818) Lactobacillus reuteri DSM 20016 5188267 YP_001271520.1 CDS recU NC_009513.1 979830 980444 R functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease complement(979830..980444) Lactobacillus reuteri DSM 20016 5189667 YP_001271521.1 CDS Lreu_0922 NC_009513.1 980563 981135 D PFAM: protein of unknown function DUF1273; hypothetical protein 980563..981135 Lactobacillus reuteri DSM 20016 5189284 YP_001271522.1 CDS Lreu_0923 NC_009513.1 981207 981569 D GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB 981207..981569 Lactobacillus reuteri DSM 20016 5189066 YP_001271523.1 CDS Lreu_0924 NC_009513.1 982281 982757 D PFAM: NrdI family protein; NrdI family protein 982281..982757 Lactobacillus reuteri DSM 20016 5188362 YP_001271524.1 CDS Lreu_0925 NC_009513.1 982908 984104 D PFAM: RNA methylase; RNA methylase 982908..984104 Lactobacillus reuteri DSM 20016 5188672 YP_001271525.1 CDS Lreu_0926 NC_009513.1 984238 984633 R RNase HI complement(984238..984633) Lactobacillus reuteri DSM 20016 5188402 YP_001271526.1 CDS Lreu_0927 NC_009513.1 984658 985065 D hypothetical protein 984658..985065 Lactobacillus reuteri DSM 20016 5188618 YP_001271527.1 CDS Lreu_0928 NC_009513.1 985066 985512 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 985066..985512 Lactobacillus reuteri DSM 20016 5188518 YP_001271528.1 CDS Lreu_0929 NC_009513.1 985516 986427 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase D 985516..986427 Lactobacillus reuteri DSM 20016 5188943 YP_001271529.1 CDS Lreu_0930 NC_009513.1 986504 987589 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 986504..987589 Lactobacillus reuteri DSM 20016 5188590 YP_001271530.1 CDS Lreu_0931 NC_009513.1 987589 990063 D PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; carbamoyl-phosphate synthase 987589..990063 Lactobacillus reuteri DSM 20016 5188469 YP_001271531.1 CDS Lreu_0932 NC_009513.1 990232 991914 R PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; fibronectin-binding A domain-containing protein complement(990232..991914) Lactobacillus reuteri DSM 20016 5188184 YP_001271532.1 CDS Lreu_0933 NC_009513.1 992131 993009 D TIGRFAM: degV family protein; PFAM: DegV family protein; degV family protein 992131..993009 Lactobacillus reuteri DSM 20016 5188555 YP_001271533.1 CDS Lreu_0934 NC_009513.1 993060 993650 D hypothetical protein 993060..993650 Lactobacillus reuteri DSM 20016 5188504 YP_001271534.1 CDS Lreu_0935 NC_009513.1 993714 994370 R PFAM: metal-dependent phosphohydrolase, HD sub domain; metal dependent phosphohydrolase complement(993714..994370) Lactobacillus reuteri DSM 20016 5188203 YP_001271535.1 CDS Lreu_0936 NC_009513.1 994469 995317 D PFAM: glycosyl transferase, family 8; glycosyl transferase family protein 994469..995317 Lactobacillus reuteri DSM 20016 5188413 YP_001271536.1 CDS Lreu_0937 NC_009513.1 995291 996136 R PFAM: hydrolase family protein; hydrolase family protein complement(995291..996136) Lactobacillus reuteri DSM 20016 5188246 YP_001271537.1 CDS Lreu_0938 NC_009513.1 996296 996820 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 996296..996820 Lactobacillus reuteri DSM 20016 5188303 YP_001271538.1 CDS Lreu_0939 NC_009513.1 996908 998290 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase complement(996908..998290) Lactobacillus reuteri DSM 20016 5188521 YP_001271539.1 CDS Lreu_0940 NC_009513.1 998785 1000128 R PFAM: protein of unknown function DUF711; hypothetical protein complement(998785..1000128) Lactobacillus reuteri DSM 20016 5188398 YP_001271540.1 CDS Lreu_0941 NC_009513.1 1000153 1000419 R PFAM: amino acid-binding ACT domain protein; ACT domain-containing protein complement(1000153..1000419) Lactobacillus reuteri DSM 20016 5188406 YP_001271541.1 CDS Lreu_0942 NC_009513.1 1000680 1001582 R PFAM: aldo/keto reductase; 2,5-didehydrogluconate reductase complement(1000680..1001582) Lactobacillus reuteri DSM 20016 5188323 YP_001271542.1 CDS Lreu_0943 NC_009513.1 1001628 1002512 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1001628..1002512) Lactobacillus reuteri DSM 20016 5188543 YP_001271543.1 CDS Lreu_0944 NC_009513.1 1002555 1003031 D hypothetical protein 1002555..1003031 Lactobacillus reuteri DSM 20016 5188527 YP_001271544.1 CDS Lreu_0945 NC_009513.1 1003126 1003461 D hypothetical protein 1003126..1003461 Lactobacillus reuteri DSM 20016 5188454 YP_001271545.1 CDS Lreu_0946 NC_009513.1 1003617 1004072 D PFAM: protein of unknown function DUF441; hypothetical protein 1003617..1004072 Lactobacillus reuteri DSM 20016 5188385 YP_001271546.1 CDS Lreu_0947 NC_009513.1 1004122 1005510 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter complement(1004122..1005510) Lactobacillus reuteri DSM 20016 5188230 YP_001271547.1 CDS Lreu_0948 NC_009513.1 1005665 1006093 D TIGRFAM: Copper transport repressor CopY/TcrY; PFAM: Penicillinase repressor; CopY family transcriptional regulator 1005665..1006093 Lactobacillus reuteri DSM 20016 5188611 YP_001271548.1 CDS Lreu_0949 NC_009513.1 1006153 1007514 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; hypothetical protein complement(1006153..1007514) Lactobacillus reuteri DSM 20016 5188410 YP_001271549.1 CDS Lreu_0950 NC_009513.1 1007654 1009390 D PFAM: ABC-1 domain protein; 2-octaprenylphenol hydroxylase 1007654..1009390 Lactobacillus reuteri DSM 20016 5188441 YP_001271550.1 CDS Lreu_0951 NC_009513.1 1009394 1010209 D PFAM: protein of unknown function DUF218; hypothetical protein 1009394..1010209 Lactobacillus reuteri DSM 20016 5188388 YP_001271551.1 CDS Lreu_0952 NC_009513.1 1010261 1010653 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1010261..1010653) Lactobacillus reuteri DSM 20016 5188479 YP_001271552.1 CDS Lreu_0953 NC_009513.1 1010761 1011138 D PFAM: Camphor resistance CrcB protein; camphor resistance protein CrcB 1010761..1011138 Lactobacillus reuteri DSM 20016 5188456 YP_001271553.1 CDS Lreu_0954 NC_009513.1 1011131 1011469 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; camphor resistance protein CrcB 1011131..1011469 Lactobacillus reuteri DSM 20016 5188476 YP_001271554.1 CDS Lreu_0955 NC_009513.1 1011485 1013998 D PFAM: ABC transporter related; ABC transporter-like protien 1011485..1013998 Lactobacillus reuteri DSM 20016 5188647 YP_001271555.1 CDS Lreu_0956 NC_009513.1 1014062 1014754 R PFAM: SNARE associated Golgi protein; hypothetical protein complement(1014062..1014754) Lactobacillus reuteri DSM 20016 5188182 YP_001271556.1 CDS Lreu_0957 NC_009513.1 1014757 1016007 R hypothetical protein complement(1014757..1016007) Lactobacillus reuteri DSM 20016 5188524 YP_001271557.1 CDS Lreu_0958 NC_009513.1 1016175 1017950 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1016175..1017950 Lactobacillus reuteri DSM 20016 5188530 YP_001271558.1 CDS Lreu_0959 NC_009513.1 1017990 1018895 D TIGRFAM: LPXTG-motif cell wall anchor domain; cell wall anchor domain-containing protein 1017990..1018895 Lactobacillus reuteri DSM 20016 5188266 YP_001271559.1 CDS Lreu_0960 NC_009513.1 1019181 1020572 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 1019181..1020572 Lactobacillus reuteri DSM 20016 5188567 YP_001271560.1 CDS Lreu_0961 NC_009513.1 1020682 1021536 D PFAM: DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 1020682..1021536 Lactobacillus reuteri DSM 20016 5188668 YP_001271561.1 CDS Lreu_0962 NC_009513.1 1021715 1024039 D hypothetical protein 1021715..1024039 Lactobacillus reuteri DSM 20016 5188546 YP_001271562.1 CDS Lreu_0963 NC_009513.1 1024123 1025505 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase complement(1024123..1025505) Lactobacillus reuteri DSM 20016 5188538 YP_001271563.1 CDS Lreu_0964 NC_009513.1 1025990 1026259 R hypothetical protein complement(1025990..1026259) Lactobacillus reuteri DSM 20016 5188609 YP_001271564.1 CDS Lreu_0965 NC_009513.1 1026376 1026621 D hypothetical protein 1026376..1026621 Lactobacillus reuteri DSM 20016 5188370 YP_001271565.1 CDS Lreu_0966 NC_009513.1 1026618 1026818 D hypothetical protein 1026618..1026818 Lactobacillus reuteri DSM 20016 5188252 YP_001271566.1 CDS Lreu_0967 NC_009513.1 1026828 1027466 D PFAM: protein of unknown function DUF421; hypothetical protein 1026828..1027466 Lactobacillus reuteri DSM 20016 5188349 YP_001271567.1 CDS Lreu_0968 NC_009513.1 1027542 1028405 D PFAM: hydrolase family protein; hydrolase family protein 1027542..1028405 Lactobacillus reuteri DSM 20016 5188409 YP_001271568.1 CDS Lreu_0969 NC_009513.1 1028407 1028562 D hypothetical protein 1028407..1028562 Lactobacillus reuteri DSM 20016 5188157 YP_001271569.1 CDS Lreu_0970 NC_009513.1 1028638 1029120 D PFAM: nucleoside 2-deoxyribosyltransferase; nucleotide deoxyribosyltransferase 1028638..1029120 Lactobacillus reuteri DSM 20016 5188639 YP_001271570.1 CDS Lreu_0971 NC_009513.1 1029165 1030001 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; HAD family hydrolase complement(1029165..1030001) Lactobacillus reuteri DSM 20016 5189042 YP_001271571.1 CDS Lreu_0972 NC_009513.1 1030022 1030384 R hypothetical protein complement(1030022..1030384) Lactobacillus reuteri DSM 20016 5188684 YP_001271572.1 CDS Lreu_0973 NC_009513.1 1030770 1031057 R hypothetical protein complement(1030770..1031057) Lactobacillus reuteri DSM 20016 5188642 YP_001271573.1 CDS Lreu_0975 NC_009513.1 1032334 1032477 D hypothetical protein 1032334..1032477 Lactobacillus reuteri DSM 20016 5189231 YP_001271574.1 CDS Lreu_0976 NC_009513.1 1032474 1032605 D hypothetical protein 1032474..1032605 Lactobacillus reuteri DSM 20016 5189215 YP_001271575.1 CDS Lreu_0977 NC_009513.1 1032872 1033330 D PFAM: transposase IS200-family protein; transposase IS200-family protein 1032872..1033330 Lactobacillus reuteri DSM 20016 5189298 YP_001271576.1 CDS Lreu_0978 NC_009513.1 1033558 1034496 R PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(1033558..1034496) Lactobacillus reuteri DSM 20016 5188706 YP_001271577.1 CDS Lreu_0979 NC_009513.1 1034721 1035368 D PFAM: DSBA oxidoreductase; DSBA oxidoreductase 1034721..1035368 Lactobacillus reuteri DSM 20016 5189179 YP_001271578.1 CDS Lreu_0980 NC_009513.1 1035501 1035854 D hypothetical protein 1035501..1035854 Lactobacillus reuteri DSM 20016 5189132 YP_001271579.1 CDS Lreu_0981 NC_009513.1 1037039 1037803 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(1037039..1037803) Lactobacillus reuteri DSM 20016 5189191 YP_001271580.1 CDS Lreu_0982 NC_009513.1 1037814 1038590 R PFAM: acetyl-CoA carboxylase, alpha subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha complement(1037814..1038590) Lactobacillus reuteri DSM 20016 5189305 YP_001271581.1 CDS Lreu_0983 NC_009513.1 1038583 1039347 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha complement(1038583..1039347) Lactobacillus reuteri DSM 20016 5189116 YP_001271582.1 CDS Lreu_0984 NC_009513.1 1039428 1040798 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; acetyl-CoA carboxylase, biotin carboxylase complement(1039428..1040798) Lactobacillus reuteri DSM 20016 5189296 YP_001271583.1 CDS fabZ NC_009513.1 1040807 1041241 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1040807..1041241) Lactobacillus reuteri DSM 20016 5189041 YP_001271584.1 CDS Lreu_0986 NC_009513.1 1041234 1041686 R PFAM: biotin/lipoyl attachment domain-containing protein; biotin carboxyl carrier protein complement(1041234..1041686) Lactobacillus reuteri DSM 20016 5189290 YP_001271585.1 CDS Lreu_0987 NC_009513.1 1041693 1042925 R PFAM: Beta-ketoacyl synthase-like; 3-oxoacyl-ACP synthase complement(1041693..1042925) Lactobacillus reuteri DSM 20016 5189168 YP_001271586.1 CDS Lreu_0988 NC_009513.1 1042936 1043670 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(1042936..1043670) Lactobacillus reuteri DSM 20016 5188681 YP_001271587.1 CDS Lreu_0989 NC_009513.1 1043654 1044541 R (acyl-carrier-protein) S-malonyltransferase-like protein complement(1043654..1044541) Lactobacillus reuteri DSM 20016 5188697 YP_001271588.1 CDS acpP NC_009513.1 1044604 1044852 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1044604..1044852) Lactobacillus reuteri DSM 20016 5189172 YP_001271589.1 CDS Lreu_0991 NC_009513.1 1044866 1045840 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase complement(1044866..1045840) Lactobacillus reuteri DSM 20016 5189070 YP_001271590.1 CDS Lreu_0992 NC_009513.1 1045860 1046306 R PFAM: regulatory protein, MarR; MarR family transcriptional regulator complement(1045860..1046306) Lactobacillus reuteri DSM 20016 5188662 YP_001271591.1 CDS Lreu_0993 NC_009513.1 1046393 1046839 R TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(ACP) dehydratase FabZ complement(1046393..1046839) Lactobacillus reuteri DSM 20016 5189114 YP_001271592.1 CDS xerS NC_009513.1 1047164 1048243 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1047164..1048243 Lactobacillus reuteri DSM 20016 5188215 YP_001271593.1 CDS Lreu_0995 NC_009513.1 1048597 1049208 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(1048597..1049208) Lactobacillus reuteri DSM 20016 5189253 YP_001271594.1 CDS Lreu_0996 NC_009513.1 1049298 1049972 R hypothetical protein complement(1049298..1049972) Lactobacillus reuteri DSM 20016 5189065 YP_001271595.1 CDS Lreu_0997 NC_009513.1 1050399 1051253 D PFAM: Patatin; patatin 1050399..1051253 Lactobacillus reuteri DSM 20016 5189324 YP_001271596.1 CDS Lreu_0998 NC_009513.1 1051270 1051917 D PFAM: phage integrase family protein; phage integrase family protein 1051270..1051917 Lactobacillus reuteri DSM 20016 5189170 YP_001271597.1 CDS Lreu_0999 NC_009513.1 1052026 1052916 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1052026..1052916 Lactobacillus reuteri DSM 20016 5188321 YP_001271598.1 CDS Lreu_1000 NC_009513.1 1053100 1054710 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 1053100..1054710 Lactobacillus reuteri DSM 20016 5189242 YP_001271599.1 CDS Lreu_1002 NC_009513.1 1055060 1055716 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(1055060..1055716) Lactobacillus reuteri DSM 20016 5189294 YP_001271600.1 CDS Lreu_1003 NC_009513.1 1055765 1056028 R hypothetical protein complement(1055765..1056028) Lactobacillus reuteri DSM 20016 5188419 YP_001271601.1 CDS Lreu_1004 NC_009513.1 1056290 1056748 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(1056290..1056748) Lactobacillus reuteri DSM 20016 5189086 YP_001271602.1 CDS Lreu_1005 NC_009513.1 1057001 1057960 D hypothetical protein 1057001..1057960 Lactobacillus reuteri DSM 20016 5188437 YP_001271603.1 CDS Lreu_1006 NC_009513.1 1057976 1058407 D hypothetical protein 1057976..1058407 Lactobacillus reuteri DSM 20016 5189077 YP_001271604.1 CDS Lreu_1007 NC_009513.1 1059466 1059960 D PFAM: regulatory protein, Crp; CRP/FNR family transcriptional regulator 1059466..1059960 Lactobacillus reuteri DSM 20016 5189193 YP_001271605.1 CDS Lreu_1008 NC_009513.1 1060152 1060340 D hypothetical protein 1060152..1060340 Lactobacillus reuteri DSM 20016 5188336 YP_001271606.1 CDS Lreu_1009 NC_009513.1 1060330 1060686 D PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 1060330..1060686 Lactobacillus reuteri DSM 20016 5188427 YP_001271607.1 CDS Lreu_1010 NC_009513.1 1060757 1062301 D PFAM: transposase IS66; transposase IS66 1060757..1062301 Lactobacillus reuteri DSM 20016 5188155 YP_001271608.1 CDS Lreu_1011 NC_009513.1 1062448 1064337 R hypothetical protein complement(1062448..1064337) Lactobacillus reuteri DSM 20016 5188463 YP_001271609.1 CDS Lreu_1012 NC_009513.1 1064338 1064643 R hypothetical protein complement(1064338..1064643) Lactobacillus reuteri DSM 20016 5188455 YP_001271610.1 CDS Lreu_1013 NC_009513.1 1064923 1065732 D PFAM: hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 1064923..1065732 Lactobacillus reuteri DSM 20016 5188508 YP_001271611.1 CDS Lreu_1014 NC_009513.1 1065704 1066543 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1065704..1066543 Lactobacillus reuteri DSM 20016 5188148 YP_001271612.1 CDS Lreu_1015 NC_009513.1 1066540 1067187 D TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 1066540..1067187 Lactobacillus reuteri DSM 20016 5188285 YP_001271613.1 CDS Lreu_1016 NC_009513.1 1067263 1068522 R PFAM: Chloride channel, core; chloride channel protein complement(1067263..1068522) Lactobacillus reuteri DSM 20016 5189872 YP_001271614.1 CDS Lreu_1017 NC_009513.1 1068680 1070986 R PFAM: glycoside hydrolase, family 31; Alpha-glucosidase complement(1068680..1070986) Lactobacillus reuteri DSM 20016 5188193 YP_001271615.1 CDS Lreu_1018 NC_009513.1 1071110 1071772 D PFAM: phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 1071110..1071772 Lactobacillus reuteri DSM 20016 5188415 YP_001271616.1 CDS Lreu_1019 NC_009513.1 1071945 1072133 D hypothetical protein 1071945..1072133 Lactobacillus reuteri DSM 20016 5188290 YP_001271617.1 CDS Lreu_1020 NC_009513.1 1072123 1072479 D PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 1072123..1072479 Lactobacillus reuteri DSM 20016 5188161 YP_001271618.1 CDS Lreu_1021 NC_009513.1 1072546 1074075 D PFAM: transposase IS66; transposase IS66 1072546..1074075 Lactobacillus reuteri DSM 20016 5189278 YP_001271619.1 CDS Lreu_1022 NC_009513.1 1079768 1080256 R hypothetical protein complement(1079768..1080256) Lactobacillus reuteri DSM 20016 5188911 YP_001271620.1 CDS Lreu_1023 NC_009513.1 1080287 1081294 R hypothetical protein complement(1080287..1081294) Lactobacillus reuteri DSM 20016 5188908 YP_001271621.1 CDS Lreu_1024 NC_009513.1 1081481 1081768 R hypothetical protein complement(1081481..1081768) Lactobacillus reuteri DSM 20016 5189026 YP_001271622.1 CDS Lreu_1025 NC_009513.1 1081877 1082713 R PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(1081877..1082713) Lactobacillus reuteri DSM 20016 5188914 YP_001271623.1 CDS Lreu_1026 NC_009513.1 1082877 1083581 D PFAM: glucosamine/galactosamine-6-phosphate isomerase; glucosamine/galactosamine-6-phosphate isomerase 1082877..1083581 Lactobacillus reuteri DSM 20016 5188906 YP_001271624.1 CDS Lreu_1027 NC_009513.1 1083578 1084138 R PFAM: filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(1083578..1084138) Lactobacillus reuteri DSM 20016 5188913 YP_001271625.1 CDS Lreu_1028 NC_009513.1 1084140 1084553 R hypothetical protein complement(1084140..1084553) Lactobacillus reuteri DSM 20016 5188889 YP_001271626.1 CDS Lreu_1029 NC_009513.1 1084663 1086921 R TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; cell wall anchor domain-containing protein complement(1084663..1086921) Lactobacillus reuteri DSM 20016 5188594 YP_001271627.1 CDS Lreu_1030 NC_009513.1 1087127 1087804 D hypothetical protein 1087127..1087804 Lactobacillus reuteri DSM 20016 5188340 YP_001271628.1 CDS Lreu_1031 NC_009513.1 1088444 1091545 R PFAM: SMC domain protein; SMC domain-containing protein complement(1088444..1091545) Lactobacillus reuteri DSM 20016 5189182 YP_001271629.1 CDS Lreu_1032 NC_009513.1 1091547 1092665 R TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; nuclease SbcCD subunit D complement(1091547..1092665) Lactobacillus reuteri DSM 20016 5188448 YP_001271630.1 CDS Lreu_1033 NC_009513.1 1092818 1092994 R hypothetical protein complement(1092818..1092994) Lactobacillus reuteri DSM 20016 5188152 YP_001271631.1 CDS Lreu_1034 NC_009513.1 1093013 1093789 R PFAM: PHP C-terminal domain protein; protein-tyrosine-phosphatase complement(1093013..1093789) Lactobacillus reuteri DSM 20016 5189428 YP_001271632.1 CDS Lreu_1035 NC_009513.1 1093886 1094761 R PFAM: helicase domain protein; helicase domain-containing protein complement(1093886..1094761) Lactobacillus reuteri DSM 20016 5188163 YP_001271633.1 CDS Lreu_1036 NC_009513.1 1094873 1097371 R PFAM: zinc finger, SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases-like; SNF2 helicase associated domain-containing protein complement(1094873..1097371) Lactobacillus reuteri DSM 20016 5188515 YP_001271634.1 CDS Lreu_1037 NC_009513.1 1097436 1099328 R hypothetical protein complement(1097436..1099328) Lactobacillus reuteri DSM 20016 5189241 YP_001271635.1 CDS Lreu_1038 NC_009513.1 1099638 1100429 R hypothetical protein complement(1099638..1100429) Lactobacillus reuteri DSM 20016 5189162 YP_001271636.1 CDS Lreu_1039 NC_009513.1 1100450 1101244 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(1100450..1101244) Lactobacillus reuteri DSM 20016 5189135 YP_001271637.1 CDS Lreu_1040 NC_009513.1 1101444 1101701 R hypothetical protein complement(1101444..1101701) Lactobacillus reuteri DSM 20016 5188723 YP_001271638.1 CDS Lreu_1041 NC_009513.1 1101780 1103183 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1101780..1103183) Lactobacillus reuteri DSM 20016 5189280 YP_001271639.1 CDS mmuM NC_009513.1 1103176 1104108 R converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase complement(1103176..1104108) Lactobacillus reuteri DSM 20016 5189060 YP_001271640.1 CDS Lreu_1043 NC_009513.1 1104553 1104978 R hypothetical protein complement(1104553..1104978) Lactobacillus reuteri DSM 20016 5188195 YP_001271641.1 CDS Lreu_1044 NC_009513.1 1105270 1106238 D PFAM: Integrase, catalytic region; integrase catalytic subunit 1105270..1106238 Lactobacillus reuteri DSM 20016 5189477 YP_001271642.1 CDS Lreu_1045 NC_009513.1 1106240 1107109 R hypothetical protein complement(1106240..1107109) Lactobacillus reuteri DSM 20016 5188414 YP_001271643.1 CDS Lreu_1046 NC_009513.1 1107246 1108004 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(1107246..1108004) Lactobacillus reuteri DSM 20016 5188553 YP_001271644.1 CDS Lreu_1047 NC_009513.1 1108009 1109220 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(1108009..1109220) Lactobacillus reuteri DSM 20016 5188269 YP_001271645.1 CDS Lreu_1048 NC_009513.1 1109397 1110488 R superfamily I DNA/RNA helicase-like protein complement(1109397..1110488) Lactobacillus reuteri DSM 20016 5188665 YP_001271646.1 CDS Lreu_1049 NC_009513.1 1110473 1112086 R SMART: AAA ATPase; ATPase AAA complement(1110473..1112086) Lactobacillus reuteri DSM 20016 5188186 YP_001271647.1 CDS Lreu_1050 NC_009513.1 1112544 1112765 R hypothetical protein complement(1112544..1112765) Lactobacillus reuteri DSM 20016 5189244 YP_001271648.1 CDS Lreu_1051 NC_009513.1 1113328 1115346 R PFAM: KAP P-loop domain protein; KAP P-loop domain-containing protein complement(1113328..1115346) Lactobacillus reuteri DSM 20016 5189896 YP_001271649.1 CDS Lreu_1053 NC_009513.1 1116757 1118340 R hypothetical protein complement(1116757..1118340) Lactobacillus reuteri DSM 20016 5188383 YP_001271650.1 CDS Lreu_1054 NC_009513.1 1118440 1119285 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-4-dehydrorhamnose reductase complement(1118440..1119285) Lactobacillus reuteri DSM 20016 5188249 YP_001271651.1 CDS Lreu_1055 NC_009513.1 1119432 1120319 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; dTDP-glucose 4,6-dehydratase complement(1119432..1120319) Lactobacillus reuteri DSM 20016 5188353 YP_001271652.1 CDS Lreu_1057 NC_009513.1 1120617 1121618 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator complement(1120617..1121618) Lactobacillus reuteri DSM 20016 5188649 YP_001271653.1 CDS Lreu_1058 NC_009513.1 1122015 1122413 R PFAM: helix-turn-helix, HxlR type; HxlR family transcriptional regulator complement(1122015..1122413) Lactobacillus reuteri DSM 20016 5188622 YP_001271654.1 CDS Lreu_1059 NC_009513.1 1122519 1123043 R hypothetical protein complement(1122519..1123043) Lactobacillus reuteri DSM 20016 5188703 YP_001271655.1 CDS Lreu_1061 NC_009513.1 1124352 1124696 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(1124352..1124696) Lactobacillus reuteri DSM 20016 5188629 YP_001271656.1 CDS Lreu_1062 NC_009513.1 1125301 1125876 D ECF subfamily RNA polymerase sigma-24 factor 1125301..1125876 Lactobacillus reuteri DSM 20016 5189155 YP_001271657.1 CDS Lreu_1063 NC_009513.1 1125886 1126122 D hypothetical protein 1125886..1126122 Lactobacillus reuteri DSM 20016 5188283 YP_001271658.1 CDS Lreu_1064 NC_009513.1 1126164 1126667 R hypothetical protein complement(1126164..1126667) Lactobacillus reuteri DSM 20016 5188428 YP_001271659.1 CDS Lreu_1065 NC_009513.1 1126723 1128225 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; glycerol kinase complement(1126723..1128225) Lactobacillus reuteri DSM 20016 5188503 YP_001271660.1 CDS Lreu_1066 NC_009513.1 1128360 1128545 R PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase complement(1128360..1128545) Lactobacillus reuteri DSM 20016 5190136 YP_001271661.1 CDS Lreu_1067 NC_009513.1 1128628 1130457 R PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(1128628..1130457) Lactobacillus reuteri DSM 20016 5189062 YP_001271662.1 CDS Lreu_1068 NC_009513.1 1130596 1131999 D PFAM: peptidase U34, dipeptidase; peptidase U34, dipeptidase 1130596..1131999 Lactobacillus reuteri DSM 20016 5188434 YP_001271663.1 CDS Lreu_1069 NC_009513.1 1132151 1132864 D hypothetical protein 1132151..1132864 Lactobacillus reuteri DSM 20016 5188405 YP_001271664.1 CDS Lreu_1070 NC_009513.1 1132861 1133712 D PFAM: Integrase, catalytic region; integrase catalytic subunit 1132861..1133712 Lactobacillus reuteri DSM 20016 5188510 YP_001271665.1 CDS Lreu_1071 NC_009513.1 1134250 1135917 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1134250..1135917) Lactobacillus reuteri DSM 20016 5188197 YP_001271666.1 CDS Lreu_1072 NC_009513.1 1135931 1136494 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxiredoxin complement(1135931..1136494) Lactobacillus reuteri DSM 20016 5188438 YP_001271667.1 CDS Lreu_1073 NC_009513.1 1136595 1137476 R TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; L-serine dehydratase, iron-sulfur-dependent subunit alpha complement(1136595..1137476) Lactobacillus reuteri DSM 20016 5188907 YP_001271668.1 CDS Lreu_1074 NC_009513.1 1137488 1138150 R PFAM: serine dehydratase beta chain; L-serine ammonia-lyase complement(1137488..1138150) Lactobacillus reuteri DSM 20016 5188170 YP_001271669.1 CDS Lreu_1075 NC_009513.1 1138222 1138449 R hypothetical protein complement(1138222..1138449) Lactobacillus reuteri DSM 20016 5189120 YP_001271670.1 CDS Lreu_1076 NC_009513.1 1138449 1138913 R hypothetical protein complement(1138449..1138913) Lactobacillus reuteri DSM 20016 5190117 YP_001271671.1 CDS rpsN NC_009513.1 1139282 1139551 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(1139282..1139551) Lactobacillus reuteri DSM 20016 5189121 YP_001271672.1 CDS Lreu_1078 NC_009513.1 1139697 1140548 R PFAM: metallophosphoesterase; metallophosphoesterase complement(1139697..1140548) Lactobacillus reuteri DSM 20016 5188280 YP_001271673.1 CDS Lreu_1079 NC_009513.1 1140706 1141929 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1140706..1141929 Lactobacillus reuteri DSM 20016 5188204 YP_001271674.1 CDS ubiE NC_009513.1 1141950 1142651 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1141950..1142651 Lactobacillus reuteri DSM 20016 5188400 YP_001271675.1 CDS Lreu_1081 NC_009513.1 1143076 1144215 D PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin-independent synthase MetE, N-terminal domain protein; methionine synthase, vitamin-B12 independent 1143076..1144215 Lactobacillus reuteri DSM 20016 5189404 YP_001271676.1 CDS Lreu_1082 NC_009513.1 1144233 1144976 D PFAM: cyclase family protein; cyclase family protein 1144233..1144976 Lactobacillus reuteri DSM 20016 5188528 YP_001271677.1 CDS Lreu_1083 NC_009513.1 1145038 1145937 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1145038..1145937) Lactobacillus reuteri DSM 20016 5188196 YP_001271678.1 CDS Lreu_1084 NC_009513.1 1146018 1146998 D PFAM: Polyprenyl synthetase; polyprenyl synthetase 1146018..1146998 Lactobacillus reuteri DSM 20016 5188289 YP_001271679.1 CDS Lreu_1085 NC_009513.1 1147045 1149063 R PFAM: Glycoside hydrolase, family 42, N-terminal domain protein; Beta-galactosidase trimerisation domain protein; beta-galactosidase complement(1147045..1149063) Lactobacillus reuteri DSM 20016 5188229 YP_001271680.1 CDS Lreu_1086 NC_009513.1 1149073 1150995 R TIGRFAM: PTS system, glucose subfamily, IIA subunit; sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: sugar-specific permease, EIIA 1 domain; sugar (glycoside-Pentoside-hexuronide) transporter complement(1149073..1150995) Lactobacillus reuteri DSM 20016 5188253 YP_001271681.1 CDS Lreu_1087 NC_009513.1 1151156 1152175 R PFAM: regulatory protein, LacI; LacI family transcriptional regulator complement(1151156..1152175) Lactobacillus reuteri DSM 20016 5188181 YP_001271682.1 CDS Lreu_1088 NC_009513.1 1152344 1152823 D hypothetical protein 1152344..1152823 Lactobacillus reuteri DSM 20016 5188582 YP_001271683.1 CDS Lreu_1089 NC_009513.1 1152907 1154289 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase complement(1152907..1154289) Lactobacillus reuteri DSM 20016 5188505 YP_001271684.1 CDS Lreu_1090 NC_009513.1 1154785 1155612 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(1154785..1155612) Lactobacillus reuteri DSM 20016 5188366 YP_001271685.1 CDS Lreu_1091 NC_009513.1 1155615 1155947 R hypothetical protein complement(1155615..1155947) Lactobacillus reuteri DSM 20016 5188651 YP_001271686.1 CDS Lreu_1092 NC_009513.1 1156088 1156321 D hypothetical protein 1156088..1156321 Lactobacillus reuteri DSM 20016 5188333 YP_001271687.1 CDS Lreu_1093 NC_009513.1 1156784 1157242 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(1156784..1157242) Lactobacillus reuteri DSM 20016 5188593 YP_001271688.1 CDS Lreu_1094 NC_009513.1 1158479 1159678 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase complement(1158479..1159678) Lactobacillus reuteri DSM 20016 5189029 YP_001271689.1 CDS Lreu_1095 NC_009513.1 1159668 1160039 R hypothetical protein complement(1159668..1160039) Lactobacillus reuteri DSM 20016 5189195 YP_001271690.1 CDS Lreu_1096 NC_009513.1 1160036 1160362 R hypothetical protein complement(1160036..1160362) Lactobacillus reuteri DSM 20016 5189057 YP_001271691.1 CDS Lreu_1097 NC_009513.1 1160377 1161465 R hypothetical protein complement(1160377..1161465) Lactobacillus reuteri DSM 20016 5188315 YP_001271692.1 CDS Lreu_1098 NC_009513.1 1161504 1161950 R hypothetical protein complement(1161504..1161950) Lactobacillus reuteri DSM 20016 5188435 YP_001271693.1 CDS Lreu_1099 NC_009513.1 1162206 1162610 R hypothetical protein complement(1162206..1162610) Lactobacillus reuteri DSM 20016 5189079 YP_001271694.1 CDS Lreu_1100 NC_009513.1 1162622 1163731 R hypothetical protein complement(1162622..1163731) Lactobacillus reuteri DSM 20016 5188652 YP_001271695.1 CDS Lreu_1101 NC_009513.1 1163734 1164879 R PFAM: lipolytic protein, G-D-S-L family; GDSL family lipase complement(1163734..1164879) Lactobacillus reuteri DSM 20016 5189119 YP_001271696.1 CDS Lreu_1102 NC_009513.1 1164892 1165161 R hypothetical protein complement(1164892..1165161) Lactobacillus reuteri DSM 20016 5189208 YP_001271697.1 CDS Lreu_1103 NC_009513.1 1165204 1165446 R hypothetical protein complement(1165204..1165446) Lactobacillus reuteri DSM 20016 5189205 YP_001271698.1 CDS Lreu_1104 NC_009513.1 1165439 1169518 R chromosome segregation ATPase-like protein complement(1165439..1169518) Lactobacillus reuteri DSM 20016 5188674 YP_001271699.1 CDS Lreu_1105 NC_009513.1 1169466 1171211 R PFAM: NLP/P60 protein; NLP/P60 protein complement(1169466..1171211) Lactobacillus reuteri DSM 20016 5188616 YP_001271700.1 CDS Lreu_1106 NC_009513.1 1171225 1172070 R PFAM: protein of unknown function DUF1306; hypothetical protein complement(1171225..1172070) Lactobacillus reuteri DSM 20016 5188190 YP_001271701.1 CDS Lreu_1107 NC_009513.1 1172085 1175915 R TIGRFAM: phage tape measure protein; PFAM: Lytic transglycosylase, catalytic; phage tape measure protein complement(1172085..1175915) Lactobacillus reuteri DSM 20016 5189234 YP_001271702.1 CDS Lreu_1108 NC_009513.1 1176141 1176527 R hypothetical protein complement(1176141..1176527) Lactobacillus reuteri DSM 20016 5188688 YP_001271703.1 CDS Lreu_1109 NC_009513.1 1176589 1177299 R PFAM: phage major tail protein; phage major tail protein complement(1176589..1177299) Lactobacillus reuteri DSM 20016 5189322 YP_001271704.1 CDS Lreu_1110 NC_009513.1 1177304 1177687 R PFAM: protein of unknown function DUF806; hypothetical protein complement(1177304..1177687) Lactobacillus reuteri DSM 20016 5189146 YP_001271705.1 CDS Lreu_1111 NC_009513.1 1177684 1178100 R TIGRFAM: phage protein, HK97 gp10 family; PFAM: protein of unknown function DUF646, phage head/tail component; HK97 family phage protein complement(1177684..1178100) Lactobacillus reuteri DSM 20016 5189233 YP_001271706.1 CDS Lreu_1112 NC_009513.1 1178102 1178452 R TIGRFAM: phage head-tail adaptor, putative; PFAM: phage head-tail joining family protein; phage head-tail adaptor complement(1178102..1178452) Lactobacillus reuteri DSM 20016 5189341 YP_001271707.1 CDS Lreu_1113 NC_009513.1 1178421 1178789 R TIGRFAM: uncharacterized phage protein (possible DNA packaging); PFAM: Uncharacterized phage protein (possible DNA packaging); phage protein DNA packaging protein complement(1178421..1178789) Lactobacillus reuteri DSM 20016 5189174 YP_001271708.1 CDS Lreu_1114 NC_009513.1 1178809 1179984 R TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; HK97 family phage major capsid protein complement(1178809..1179984) Lactobacillus reuteri DSM 20016 5188586 YP_001271709.1 CDS Lreu_1115 NC_009513.1 1179974 1180705 R PFAM: peptidase S14, ClpP; peptidase S14, ClpP complement(1179974..1180705) Lactobacillus reuteri DSM 20016 5189314 YP_001271710.1 CDS Lreu_1116 NC_009513.1 1180692 1181882 R TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; HK97 family phage portal protein complement(1180692..1181882) Lactobacillus reuteri DSM 20016 5189275 YP_001271711.1 CDS Lreu_1117 NC_009513.1 1182069 1183958 R PFAM: phage Terminase; phage terminase complement(1182069..1183958) Lactobacillus reuteri DSM 20016 5189355 YP_001271712.1 CDS Lreu_1118 NC_009513.1 1184024 1184197 D hypothetical protein 1184024..1184197 Lactobacillus reuteri DSM 20016 5189081 YP_001271713.1 CDS Lreu_1119 NC_009513.1 1184194 1184631 D hypothetical protein 1184194..1184631 Lactobacillus reuteri DSM 20016 5188705 YP_001271714.1 CDS Lreu_1120 NC_009513.1 1184654 1185127 R TIGRFAM: phage terminase, small subunit, putative, P27 family; PFAM: phage terminase, small subunit, putative, P27; P27 family phage terminase small subunit complement(1184654..1185127) Lactobacillus reuteri DSM 20016 5189145 YP_001271715.1 CDS Lreu_1121 NC_009513.1 1185272 1185808 R PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease complement(1185272..1185808) Lactobacillus reuteri DSM 20016 5189053 YP_001271716.1 CDS Lreu_1122 NC_009513.1 1185876 1186055 R hypothetical protein complement(1185876..1186055) Lactobacillus reuteri DSM 20016 5189202 YP_001271717.1 CDS Lreu_1123 NC_009513.1 1186715 1187173 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(1186715..1187173) Lactobacillus reuteri DSM 20016 5189343 YP_001271718.1 CDS Lreu_1124 NC_009513.1 1187446 1188288 R hypothetical protein complement(1187446..1188288) Lactobacillus reuteri DSM 20016 5189250 YP_001271719.1 CDS Lreu_1125 NC_009513.1 1189194 1189616 R hypothetical protein complement(1189194..1189616) Lactobacillus reuteri DSM 20016 5189286 YP_001271720.1 CDS Lreu_1126 NC_009513.1 1189698 1189841 R hypothetical protein complement(1189698..1189841) Lactobacillus reuteri DSM 20016 5189352 YP_001271721.1 CDS Lreu_1127 NC_009513.1 1189904 1190215 R hypothetical protein complement(1189904..1190215) Lactobacillus reuteri DSM 20016 5188641 YP_001271722.1 CDS Lreu_1128 NC_009513.1 1190215 1190475 R hypothetical protein complement(1190215..1190475) Lactobacillus reuteri DSM 20016 5188365 YP_001271723.1 CDS Lreu_1129 NC_009513.1 1190483 1190671 R hypothetical protein complement(1190483..1190671) Lactobacillus reuteri DSM 20016 5188192 YP_001271724.1 CDS Lreu_1130 NC_009513.1 1190671 1191012 R hypothetical protein complement(1190671..1191012) Lactobacillus reuteri DSM 20016 5188449 YP_001271725.1 CDS Lreu_1131 NC_009513.1 1191012 1191272 R hypothetical protein complement(1191012..1191272) Lactobacillus reuteri DSM 20016 5188475 YP_001271726.1 CDS Lreu_1132 NC_009513.1 1191272 1191466 R hypothetical protein complement(1191272..1191466) Lactobacillus reuteri DSM 20016 5188310 YP_001271727.1 CDS Lreu_1133 NC_009513.1 1191510 1191671 R hypothetical protein complement(1191510..1191671) Lactobacillus reuteri DSM 20016 5188498 YP_001271728.1 CDS Lreu_1134 NC_009513.1 1191847 1192125 R hypothetical protein complement(1191847..1192125) Lactobacillus reuteri DSM 20016 5189037 YP_001271729.1 CDS Lreu_1135 NC_009513.1 1192201 1192572 R hypothetical protein complement(1192201..1192572) Lactobacillus reuteri DSM 20016 5189099 YP_001271730.1 CDS Lreu_1136 NC_009513.1 1192569 1192898 R hypothetical protein complement(1192569..1192898) Lactobacillus reuteri DSM 20016 5189064 YP_001271731.1 CDS Lreu_1137 NC_009513.1 1192891 1193748 R TIGRFAM: primosome, DnaD subunit; primosome subunit DnaD complement(1192891..1193748) Lactobacillus reuteri DSM 20016 5189080 YP_001271732.1 CDS Lreu_1138 NC_009513.1 1193753 1194577 R hypothetical protein complement(1193753..1194577) Lactobacillus reuteri DSM 20016 5189106 YP_001271733.1 CDS Lreu_1139 NC_009513.1 1194561 1195550 R PFAM: RecT protein; RecT protein complement(1194561..1195550) Lactobacillus reuteri DSM 20016 5189153 YP_001271734.1 CDS Lreu_1140 NC_009513.1 1195543 1195773 R hypothetical protein complement(1195543..1195773) Lactobacillus reuteri DSM 20016 5189246 YP_001271735.1 CDS Lreu_1141 NC_009513.1 1196047 1196553 D hypothetical protein 1196047..1196553 Lactobacillus reuteri DSM 20016 5189350 YP_001271736.1 CDS Lreu_1142 NC_009513.1 1197123 1197926 R PFAM: BRO domain protein domain protein; phage antirepressor protein; phage antirepressor protein complement(1197123..1197926) Lactobacillus reuteri DSM 20016 5189204 YP_001271737.1 CDS Lreu_1143 NC_009513.1 1197945 1198148 R SMART: helix-turn-helix domain protein; XRE family transcriptional regulator complement(1197945..1198148) Lactobacillus reuteri DSM 20016 5189481 YP_001271738.1 CDS Lreu_1144 NC_009513.1 1198327 1198764 D PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1198327..1198764 Lactobacillus reuteri DSM 20016 5189239 YP_001271739.1 CDS Lreu_1145 NC_009513.1 1198777 1199217 D PFAM: protein of unknown function DUF955; hypothetical protein 1198777..1199217 Lactobacillus reuteri DSM 20016 5189048 YP_001271740.1 CDS Lreu_1146 NC_009513.1 1199346 1199855 D PFAM: protein of unknown function DUF1535; hypothetical protein 1199346..1199855 Lactobacillus reuteri DSM 20016 5189243 YP_001271741.1 CDS Lreu_1147 NC_009513.1 1200018 1200335 D hypothetical protein 1200018..1200335 Lactobacillus reuteri DSM 20016 5189108 YP_001271742.1 CDS Lreu_1148 NC_009513.1 1200338 1201468 D PFAM: phage integrase family protein; phage integrase family protein 1200338..1201468 Lactobacillus reuteri DSM 20016 5189030 YP_001271743.1 CDS rplS NC_009513.1 1201582 1201968 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1201582..1201968) Lactobacillus reuteri DSM 20016 5188563 YP_001271744.1 CDS Lreu_1150 NC_009513.1 1202064 1203494 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1202064..1203494) Lactobacillus reuteri DSM 20016 5189201 YP_001271745.1 CDS trmD NC_009513.1 1203505 1204263 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1203505..1204263) Lactobacillus reuteri DSM 20016 5189097 YP_001271746.1 CDS rimM NC_009513.1 1204263 1204769 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1204263..1204769) Lactobacillus reuteri DSM 20016 5188356 YP_001271747.1 CDS Lreu_1153 NC_009513.1 1204824 1205084 R hypothetical protein complement(1204824..1205084) Lactobacillus reuteri DSM 20016 5188292 YP_001271748.1 CDS rpsP NC_009513.1 1205097 1205372 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1205097..1205372) Lactobacillus reuteri DSM 20016 5188363 YP_001271749.1 CDS Lreu_1155 NC_009513.1 1205471 1206916 R TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle subunit FFH/SRP54 (srp54) complement(1205471..1206916) Lactobacillus reuteri DSM 20016 5188180 YP_001271750.1 CDS Lreu_1156 NC_009513.1 1206918 1207259 R PFAM: helix-turn-helix protein, YlxM/p13 family protein; DNA-binding protein complement(1206918..1207259) Lactobacillus reuteri DSM 20016 5188451 YP_001271751.1 CDS Lreu_1157 NC_009513.1 1207274 1208800 R TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(1207274..1208800) Lactobacillus reuteri DSM 20016 5188494 YP_001271752.1 CDS Lreu_1158 NC_009513.1 1208823 1212386 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; condensin subunit Smc complement(1208823..1212386) Lactobacillus reuteri DSM 20016 5188440 YP_001271753.1 CDS rnc NC_009513.1 1212403 1213104 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1212403..1213104) Lactobacillus reuteri DSM 20016 5188484 YP_001271754.1 CDS acpP NC_009513.1 1213281 1213535 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1213281..1213535) Lactobacillus reuteri DSM 20016 5188194 YP_001271755.1 CDS Lreu_1161 NC_009513.1 1213572 1214603 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(1213572..1214603) Lactobacillus reuteri DSM 20016 5188566 YP_001271756.1 CDS Lreu_1162 NC_009513.1 1214621 1216657 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1214621..1216657) Lactobacillus reuteri DSM 20016 5188412 YP_001271757.1 CDS Lreu_1163 NC_009513.1 1216760 1218469 R PFAM: Dak phosphatase; Dak phosphatase complement(1216760..1218469) Lactobacillus reuteri DSM 20016 5188341 YP_001271758.1 CDS Lreu_1164 NC_009513.1 1218495 1218857 R PFAM: protein of unknown function DUF322; hypothetical protein complement(1218495..1218857) Lactobacillus reuteri DSM 20016 5188298 YP_001271759.1 CDS rpmB NC_009513.1 1219052 1219237 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1219052..1219237) Lactobacillus reuteri DSM 20016 5188239 YP_001271760.1 CDS Lreu_1166 NC_009513.1 1219387 1220037 R TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; thiamine pyrophosphokinase complement(1219387..1220037) Lactobacillus reuteri DSM 20016 5188575 YP_001271761.1 CDS Lreu_1167 NC_009513.1 1220123 1220776 R PFAM: ribulose-phosphate 3-epimerase; ribulose-5-phosphate 3-epimerase complement(1220123..1220776) Lactobacillus reuteri DSM 20016 5188234 YP_001271762.1 CDS Lreu_1168 NC_009513.1 1220787 1221677 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; ribosome small subunit-dependent GTPase A complement(1220787..1221677) Lactobacillus reuteri DSM 20016 5188238 YP_001271763.1 CDS Lreu_1169 NC_009513.1 1221690 1223594 R PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; protein kinase complement(1221690..1223594) Lactobacillus reuteri DSM 20016 5188254 YP_001271764.1 CDS Lreu_1170 NC_009513.1 1223598 1224338 R PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; protein phosphatase 2C-like protein complement(1223598..1224338) Lactobacillus reuteri DSM 20016 5188318 YP_001271765.1 CDS Lreu_1171 NC_009513.1 1224346 1225695 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; sun protein complement(1224346..1225695) Lactobacillus reuteri DSM 20016 5188281 YP_001271766.1 CDS Lreu_1172 NC_009513.1 1225685 1226638 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase complement(1225685..1226638) Lactobacillus reuteri DSM 20016 5188247 YP_001271767.1 CDS Lreu_1173 NC_009513.1 1226656 1229085 R TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; replication restart DNA helicase PriA complement(1226656..1229085) Lactobacillus reuteri DSM 20016 5188185 YP_001271768.1 CDS Lreu_1174 NC_009513.1 1229086 1230291 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(1229086..1230291) Lactobacillus reuteri DSM 20016 5188549 YP_001271769.1 CDS Lreu_1175 NC_009513.1 1230402 1230620 R TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega complement(1230402..1230620) Lactobacillus reuteri DSM 20016 5190031 YP_001271770.1 CDS gmk NC_009513.1 1230617 1231237 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1230617..1231237) Lactobacillus reuteri DSM 20016 5188675 YP_001271771.1 CDS Lreu_1177 NC_009513.1 1231396 1231728 D hypothetical protein 1231396..1231728 Lactobacillus reuteri DSM 20016 5188316 YP_001271772.1 CDS Lreu_1178 NC_009513.1 1232004 1233683 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein RecN complement(1232004..1233683) Lactobacillus reuteri DSM 20016 5188666 YP_001271773.1 CDS Lreu_1179 NC_009513.1 1233699 1234151 R PFAM: arginine repressor; ArgR family transcriptional regulator complement(1233699..1234151) Lactobacillus reuteri DSM 20016 5188408 YP_001271774.1 CDS Lreu_1180 NC_009513.1 1234170 1234991 R TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; hemolysin A complement(1234170..1234991) Lactobacillus reuteri DSM 20016 5188146 YP_001271775.1 CDS Lreu_1181 NC_009513.1 1235003 1235875 R PFAM: Polyprenyl synthetase; farnesyl-diphosphate synthase complement(1235003..1235875) Lactobacillus reuteri DSM 20016 5188222 YP_001271776.1 CDS Lreu_1182 NC_009513.1 1235894 1236175 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1235894..1236175) Lactobacillus reuteri DSM 20016 5188164 YP_001271777.1 CDS xseA NC_009513.1 1236177 1237514 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1236177..1237514) Lactobacillus reuteri DSM 20016 5188237 YP_001271778.1 CDS Lreu_1184 NC_009513.1 1237507 1238367 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; methenyltetrahydrofolate cyclohydrolase complement(1237507..1238367) Lactobacillus reuteri DSM 20016 5188346 YP_001271779.1 CDS nusB NC_009513.1 1238496 1238912 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1238496..1238912) Lactobacillus reuteri DSM 20016 5188465 YP_001271780.1 CDS Lreu_1186 NC_009513.1 1238914 1239351 R PFAM: protein of unknown function DUF322; hypothetical protein complement(1238914..1239351) Lactobacillus reuteri DSM 20016 5188453 YP_001271781.1 CDS Lreu_1187 NC_009513.1 1239441 1240115 R hypothetical protein complement(1239441..1240115) Lactobacillus reuteri DSM 20016 5188430 YP_001271782.1 CDS Lreu_1188 NC_009513.1 1240117 1241193 R PFAM: creatinase; peptidase M24; peptidase M24 complement(1240117..1241193) Lactobacillus reuteri DSM 20016 5189801 YP_001271783.1 CDS Lreu_1189 NC_009513.1 1241206 1241913 R PFAM: alanine racemase domain protein; alanine racemase domain-containing protein complement(1241206..1241913) Lactobacillus reuteri DSM 20016 5188214 YP_001271784.1 CDS rpmA NC_009513.1 1242039 1242320 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1242039..1242320) Lactobacillus reuteri DSM 20016 5188610 YP_001271785.1 CDS Lreu_1191 NC_009513.1 1242346 1242669 R PFAM: protein of unknown function DUF464; hypothetical protein complement(1242346..1242669) Lactobacillus reuteri DSM 20016 5188171 YP_001271786.1 CDS rplU NC_009513.1 1242685 1242993 R PFAM: ribosomal protein L21; 50S ribosomal protein L21 complement(1242685..1242993) Lactobacillus reuteri DSM 20016 5188394 YP_001271787.1 CDS Lreu_1193 NC_009513.1 1243208 1243840 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(1243208..1243840) Lactobacillus reuteri DSM 20016 5189083 YP_001271788.1 CDS Lreu_1194 NC_009513.1 1244509 1245015 R hypothetical protein complement(1244509..1245015) Lactobacillus reuteri DSM 20016 5189163 YP_001271789.1 CDS Lreu_1195 NC_009513.1 1245045 1246073 R hypothetical protein complement(1245045..1246073) Lactobacillus reuteri DSM 20016 5188470 YP_001271790.1 CDS Lreu_1196 NC_009513.1 1246063 1246950 R hypothetical protein complement(1246063..1246950) Lactobacillus reuteri DSM 20016 5189141 YP_001271791.1 CDS Lreu_1197 NC_009513.1 1247279 1247593 R PFAM: protein of unknown function DUF59; hypothetical protein complement(1247279..1247593) Lactobacillus reuteri DSM 20016 5189270 YP_001271792.1 CDS Lreu_1198 NC_009513.1 1247596 1248123 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(1247596..1248123) Lactobacillus reuteri DSM 20016 5189032 YP_001271793.1 CDS Lreu_1199 NC_009513.1 1248140 1248991 R PFAM: NLPA lipoprotein; NLPA lipoprotein complement(1248140..1248991) Lactobacillus reuteri DSM 20016 5188213 YP_001271794.1 CDS Lreu_1200 NC_009513.1 1249675 1250856 R PFAM: aminotransferase, class I and II; aminotransferase complement(1249675..1250856) Lactobacillus reuteri DSM 20016 5188189 YP_001271795.1 CDS gltX NC_009513.1 1250971 1252476 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1250971..1252476) Lactobacillus reuteri DSM 20016 5189240 YP_001271796.1 CDS Lreu_1202 NC_009513.1 1252721 1254064 R TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; L-glutamine synthetase complement(1252721..1254064) Lactobacillus reuteri DSM 20016 5188250 YP_001271797.1 CDS miaA NC_009513.1 1254237 1255160 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1254237..1255160) Lactobacillus reuteri DSM 20016 5188257 YP_001271798.1 CDS Lreu_1204 NC_009513.1 1255275 1255451 D hypothetical protein 1255275..1255451 Lactobacillus reuteri DSM 20016 5188380 YP_001271799.1 CDS Lreu_1205 NC_009513.1 1255615 1256028 R PFAM: Rhodanese domain protein; rhodanese domain-containing protein complement(1255615..1256028) Lactobacillus reuteri DSM 20016 5188166 YP_001271800.1 CDS Lreu_1206 NC_009513.1 1256048 1257019 R TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; glucokinase complement(1256048..1257019) Lactobacillus reuteri DSM 20016 5189478 YP_001271801.1 CDS Lreu_1207 NC_009513.1 1257044 1257283 R PFAM: protein of unknown function DUF910; hypothetical protein complement(1257044..1257283) Lactobacillus reuteri DSM 20016 5189664 YP_001271802.1 CDS Lreu_1208 NC_009513.1 1257290 1257949 R PFAM: Rhomboid family protein; rhomboid family protein complement(1257290..1257949) Lactobacillus reuteri DSM 20016 5189040 YP_001271803.1 CDS Lreu_1209 NC_009513.1 1257953 1258507 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(1257953..1258507) Lactobacillus reuteri DSM 20016 5188679 YP_001271804.1 CDS rpmG NC_009513.1 1258645 1258794 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1258645..1258794) Lactobacillus reuteri DSM 20016 5188710 YP_001271805.1 CDS Lreu_1211 NC_009513.1 1258933 1261011 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; penicillin-binding protein, transpeptidase complement(1258933..1261011) Lactobacillus reuteri DSM 20016 5188762 YP_001271806.1 CDS Lreu_1212 NC_009513.1 1261242 1263857 D hypothetical protein 1261242..1263857 Lactobacillus reuteri DSM 20016 5190015 YP_001271807.1 CDS Lreu_1213 NC_009513.1 1263943 1264332 R PFAM: HesB/YadR/YfhF-family protein; HesB/YadR/YfhF-family protein complement(1263943..1264332) Lactobacillus reuteri DSM 20016 5188912 YP_001271808.1 CDS Lreu_1214 NC_009513.1 1264482 1264958 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; transcription elongation factor GreA complement(1264482..1264958) Lactobacillus reuteri DSM 20016 5190029 YP_001271809.1 CDS Lreu_1215 NC_009513.1 1265022 1265678 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1265022..1265678) Lactobacillus reuteri DSM 20016 5189979 YP_001271810.1 CDS Lreu_1216 NC_009513.1 1265791 1266429 R PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; NLP/P60 protein complement(1265791..1266429) Lactobacillus reuteri DSM 20016 5190027 YP_001271811.1 CDS pheT NC_009513.1 1266613 1269030 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1266613..1269030) Lactobacillus reuteri DSM 20016 5189427 YP_001271812.1 CDS pheS NC_009513.1 1269037 1270083 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1269037..1270083) Lactobacillus reuteri DSM 20016 5190066 YP_001271813.1 CDS Lreu_1219 NC_009513.1 1270378 1270716 R PFAM: helix-turn-helix, HxlR type; HxlR family transcriptional regulator complement(1270378..1270716) Lactobacillus reuteri DSM 20016 5189429 YP_001271814.1 CDS Lreu_1220 NC_009513.1 1270737 1271243 R PFAM: metal-dependent phosphohydrolase, HD sub domain; metal dependent phosphohydrolase complement(1270737..1271243) Lactobacillus reuteri DSM 20016 5190091 YP_001271815.1 CDS Lreu_1221 NC_009513.1 1271308 1272084 R PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; tRNA/rRNA methyltransferase SpoU complement(1271308..1272084) Lactobacillus reuteri DSM 20016 5190109 YP_001271816.1 CDS Lreu_1222 NC_009513.1 1272183 1272458 D PFAM: acylphosphatase; acylphosphatase 1272183..1272458 Lactobacillus reuteri DSM 20016 5189411 YP_001271817.1 CDS Lreu_1223 NC_009513.1 1272557 1273507 D PFAM: 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein 1272557..1273507 Lactobacillus reuteri DSM 20016 5189369 YP_001271818.1 CDS Lreu_1224 NC_009513.1 1273571 1273981 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1273571..1273981 Lactobacillus reuteri DSM 20016 5189597 YP_001271819.1 CDS Lreu_1225 NC_009513.1 1274120 1275439 D PFAM: multi antimicrobial extrusion protein MatE; multi anti extrusion protein MatE 1274120..1275439 Lactobacillus reuteri DSM 20016 5190082 YP_001271820.1 CDS Lreu_1226 NC_009513.1 1275521 1277014 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1275521..1277014) Lactobacillus reuteri DSM 20016 5189623 YP_001271821.1 CDS Lreu_1227 NC_009513.1 1277203 1278678 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(1277203..1278678) Lactobacillus reuteri DSM 20016 5189681 YP_001271822.1 CDS Lreu_1228 NC_009513.1 1278691 1279377 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(1278691..1279377) Lactobacillus reuteri DSM 20016 5190110 YP_001271823.1 CDS rpmF NC_009513.1 1279602 1279781 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1279602..1279781) Lactobacillus reuteri DSM 20016 5189614 YP_001271824.1 CDS Lreu_1230 NC_009513.1 1279836 1280393 R PFAM: protein of unknown function DUF177; hypothetical protein complement(1279836..1280393) Lactobacillus reuteri DSM 20016 5189660 YP_001271825.1 CDS Lreu_1231 NC_009513.1 1280523 1281656 R PFAM: protein of unknown function DUF795; hypothetical protein complement(1280523..1281656) Lactobacillus reuteri DSM 20016 5189796 YP_001271826.1 CDS Lreu_1232 NC_009513.1 1281668 1282408 R PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase complement(1281668..1282408) Lactobacillus reuteri DSM 20016 5189435 YP_001271827.1 CDS Lreu_1233 NC_009513.1 1282408 1282764 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein complement(1282408..1282764) Lactobacillus reuteri DSM 20016 5189761 YP_001271828.1 CDS Lreu_1234 NC_009513.1 1282764 1283378 R TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(1282764..1283378) Lactobacillus reuteri DSM 20016 5189245 YP_001271829.1 CDS Lreu_1235 NC_009513.1 1283371 1284015 R TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate-nucleotide adenylyltransferase complement(1283371..1284015) Lactobacillus reuteri DSM 20016 5188167 YP_001271830.1 CDS Lreu_1236 NC_009513.1 1284037 1284348 R PFAM: protein of unknown function UPF0044; hypothetical protein complement(1284037..1284348) Lactobacillus reuteri DSM 20016 5188344 YP_001271831.1 CDS Lreu_1237 NC_009513.1 1284372 1285499 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1284372..1285499) Lactobacillus reuteri DSM 20016 5189816 YP_001271832.1 CDS Lreu_1238 NC_009513.1 1285492 1286022 R TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; HAD family phosphatase complement(1285492..1286022) Lactobacillus reuteri DSM 20016 5189301 YP_001271833.1 CDS rplT NC_009513.1 1286176 1286529 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1286176..1286529) Lactobacillus reuteri DSM 20016 5188364 YP_001271834.1 CDS rpmI NC_009513.1 1286574 1286771 R PFAM: ribosomal protein L35; 50S ribosomal protein L35 complement(1286574..1286771) Lactobacillus reuteri DSM 20016 5189264 YP_001271835.1 CDS Lreu_1241 NC_009513.1 1286794 1287306 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; translation initiation factor 3 complement(1286794..1287306) Lactobacillus reuteri DSM 20016 5188509 YP_001271836.1 CDS Lreu_1242 NC_009513.1 1287532 1288473 R PFAM: Primosomal DnaI domain protein; replicative DNA helicase loader DnaI complement(1287532..1288473) Lactobacillus reuteri DSM 20016 5189313 YP_001271837.1 CDS Lreu_1243 NC_009513.1 1288494 1289849 R PFAM: replication initiation and membrane attachment family protein; replicative DNA helicase loader DnaB complement(1288494..1289849) Lactobacillus reuteri DSM 20016 5188650 YP_001271838.1 CDS nrdR NC_009513.1 1289867 1290331 R PFAM: ATP-cone domain protein; transcriptional regulator NrdR complement(1289867..1290331) Lactobacillus reuteri DSM 20016 5189340 YP_001271839.1 CDS Lreu_1245 NC_009513.1 1290377 1290976 R TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(1290377..1290976) Lactobacillus reuteri DSM 20016 5189184 YP_001271840.1 CDS Lreu_1246 NC_009513.1 1290980 1291810 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(1290980..1291810) Lactobacillus reuteri DSM 20016 5188382 YP_001271841.1 CDS Lreu_1247 NC_009513.1 1291825 1294491 R TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 3'-5' exonuclease; Helix-hairpin-helix domain protein, class 2; DNA polymerase I complement(1291825..1294491) Lactobacillus reuteri DSM 20016 5189274 YP_001271842.1 CDS Lreu_1248 NC_009513.1 1294614 1295288 D PFAM: protein of unknown function DUF1275; hypothetical protein 1294614..1295288 Lactobacillus reuteri DSM 20016 5189176 YP_001271843.1 CDS Lreu_1249 NC_009513.1 1295347 1296060 R PFAM: protein of unknown function UPF0005; hypothetical protein complement(1295347..1296060) Lactobacillus reuteri DSM 20016 5189349 YP_001271844.1 CDS murC NC_009513.1 1296152 1297456 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1296152..1297456) Lactobacillus reuteri DSM 20016 5189251 YP_001271845.1 CDS Lreu_1251 NC_009513.1 1297583 1298230 R PFAM: t-RNA-binding domain protein; tRNA-binding domain-containing protein complement(1297583..1298230) Lactobacillus reuteri DSM 20016 5189171 YP_001271846.1 CDS Lreu_1252 NC_009513.1 1298359 1298679 R PFAM: Thioredoxin domain; thioredoxin domain-containing protein complement(1298359..1298679) Lactobacillus reuteri DSM 20016 5189169 YP_001271847.1 CDS Lreu_1253 NC_009513.1 1298844 1299182 D small secreted protein-like protein 1298844..1299182 Lactobacillus reuteri DSM 20016 5189094 YP_001271848.1 CDS Lreu_1254 NC_009513.1 1299234 1300154 D PFAM: glutaminase; L-glutaminase 1299234..1300154 Lactobacillus reuteri DSM 20016 5188623 YP_001271849.1 CDS Lreu_1255 NC_009513.1 1300320 1301303 D PFAM: aldo/keto reductase; aldo/keto reductase 1300320..1301303 Lactobacillus reuteri DSM 20016 5188696 YP_001271850.1 CDS Lreu_1256 NC_009513.1 1301342 1302844 D PFAM: glycosyl transferase, group 1; Protein of unknown function DUF1975; hypothetical protein 1301342..1302844 Lactobacillus reuteri DSM 20016 5188232 YP_001271851.1 CDS Lreu_1257 NC_009513.1 1302909 1304291 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase complement(1302909..1304291) Lactobacillus reuteri DSM 20016 5188319 YP_001271852.1 CDS Lreu_1258 NC_009513.1 1304799 1307036 R TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: surface protein from Gram-positive cocci, anchor region; PT repeat-containing protein; cell wall anchor domain-containing protein complement(1304799..1307036) Lactobacillus reuteri DSM 20016 5188367 YP_001271853.1 CDS Lreu_1259 NC_009513.1 1307479 1308465 R PFAM: YSIRK Gram-positive signal peptide; hypothetical protein complement(1307479..1308465) Lactobacillus reuteri DSM 20016 5188597 YP_001271854.1 CDS trmB NC_009513.1 1308697 1309338 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1308697..1309338) Lactobacillus reuteri DSM 20016 5188634 YP_001271855.1 CDS Lreu_1261 NC_009513.1 1309351 1310553 R PFAM: ABC transporter EcsB; ABC transporter EcsB complement(1309351..1310553) Lactobacillus reuteri DSM 20016 5189154 YP_001271856.1 CDS Lreu_1262 NC_009513.1 1310546 1311283 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(1310546..1311283) Lactobacillus reuteri DSM 20016 5189059 YP_001271857.1 CDS Lreu_1263 NC_009513.1 1311420 1311854 D PFAM: histidine triad (HIT) protein; histidine triad (HIT) protein 1311420..1311854 Lactobacillus reuteri DSM 20016 5189104 YP_001271858.1 CDS Lreu_1264 NC_009513.1 1311857 1312087 D hypothetical protein 1311857..1312087 Lactobacillus reuteri DSM 20016 5189159 YP_001271859.1 CDS Lreu_1265 NC_009513.1 1312264 1313202 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1312264..1313202) Lactobacillus reuteri DSM 20016 5189281 YP_001271860.1 CDS Lreu_1266 NC_009513.1 1313317 1315809 R hypothetical protein complement(1313317..1315809) Lactobacillus reuteri DSM 20016 5189194 YP_001271861.1 CDS Lreu_1267 NC_009513.1 1315813 1316997 R PFAM: metallophosphoesterase; metallophosphoesterase complement(1315813..1316997) Lactobacillus reuteri DSM 20016 5189261 YP_001271862.1 CDS Lreu_1268 NC_009513.1 1317077 1317448 R PFAM: protein of unknown function DUF964; hypothetical protein complement(1317077..1317448) Lactobacillus reuteri DSM 20016 5190055 YP_001271863.1 CDS Lreu_1269 NC_009513.1 1317497 1319662 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein complement(1317497..1319662) Lactobacillus reuteri DSM 20016 5189044 YP_001271864.1 CDS argS NC_009513.1 1319830 1321518 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1319830..1321518) Lactobacillus reuteri DSM 20016 5189067 YP_001271865.1 CDS Lreu_1271 NC_009513.1 1321879 1322694 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1321879..1322694 Lactobacillus reuteri DSM 20016 5189248 YP_001271866.1 CDS Lreu_1272 NC_009513.1 1322707 1323645 D TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; malate dehydrogenase (NAD) 1322707..1323645 Lactobacillus reuteri DSM 20016 5188698 YP_001271867.1 CDS Lreu_1273 NC_009513.1 1323831 1324103 R hypothetical protein complement(1323831..1324103) Lactobacillus reuteri DSM 20016 5189157 YP_001271868.1 CDS Lreu_1274 NC_009513.1 1324245 1324580 D hypothetical protein 1324245..1324580 Lactobacillus reuteri DSM 20016 5188709 YP_001271869.1 CDS Lreu_1275 NC_009513.1 1324546 1325709 R TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(1324546..1325709) Lactobacillus reuteri DSM 20016 5188588 YP_001271870.1 CDS Lreu_1276 NC_009513.1 1325711 1326298 R PFAM: Ham1 family protein; Ham1 family protein complement(1325711..1326298) Lactobacillus reuteri DSM 20016 5188169 YP_001271871.1 CDS Lreu_1277 NC_009513.1 1326288 1327547 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(1326288..1327547) Lactobacillus reuteri DSM 20016 5188422 YP_001271872.1 CDS folE NC_009513.1 1327534 1328112 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(1327534..1328112) Lactobacillus reuteri DSM 20016 5189413 YP_001271873.1 CDS Lreu_1279 NC_009513.1 1328094 1328606 R TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1328094..1328606) Lactobacillus reuteri DSM 20016 5190150 YP_001271874.1 CDS Lreu_1280 NC_009513.1 1328609 1328944 R TIGRFAM: dihydroneopterin aldolase; dihydroneopterin aldolase complement(1328609..1328944) Lactobacillus reuteri DSM 20016 5188636 YP_001271875.1 CDS Lreu_1281 NC_009513.1 1329032 1329427 R hypothetical protein complement(1329032..1329427) Lactobacillus reuteri DSM 20016 5189866 YP_001271876.1 CDS Lreu_1282 NC_009513.1 1329670 1329948 R hypothetical protein complement(1329670..1329948) Lactobacillus reuteri DSM 20016 5188607 YP_001271877.1 CDS Lreu_1283 NC_009513.1 1330292 1330969 R PFAM: Abortive infection protein; abortive infection protein complement(1330292..1330969) Lactobacillus reuteri DSM 20016 5188156 YP_001271878.1 CDS Lreu_1284 NC_009513.1 1330953 1331198 R hypothetical protein complement(1330953..1331198) Lactobacillus reuteri DSM 20016 5188534 YP_001271879.1 CDS Lreu_1285 NC_009513.1 1331315 1332238 R TIGRFAM: ribokinase; PFAM: PfkB domain protein; ribokinase complement(1331315..1332238) Lactobacillus reuteri DSM 20016 5188663 YP_001271880.1 CDS Lreu_1286 NC_009513.1 1332295 1333311 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator complement(1332295..1333311) Lactobacillus reuteri DSM 20016 5188635 YP_001271881.1 CDS Lreu_1287 NC_009513.1 1333393 1334001 R hypothetical protein complement(1333393..1334001) Lactobacillus reuteri DSM 20016 5188223 YP_001271882.1 CDS Lreu_1288 NC_009513.1 1334217 1334849 D PFAM: deoxynucleoside kinase; deoxyadenosine kinase 1334217..1334849 Lactobacillus reuteri DSM 20016 5189903 YP_001271883.1 CDS Lreu_1289 NC_009513.1 1334884 1335930 R PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase complement(1334884..1335930) Lactobacillus reuteri DSM 20016 5188272 YP_001271884.1 CDS Lreu_1290 NC_009513.1 1336020 1336517 R PFAM: UspA domain protein; UspA domain-containing protein complement(1336020..1336517) Lactobacillus reuteri DSM 20016 5188297 YP_001271885.1 CDS Lreu_1291 NC_009513.1 1336558 1337961 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1336558..1337961) Lactobacillus reuteri DSM 20016 5188343 YP_001271886.1 CDS Lreu_1292 NC_009513.1 1338050 1338910 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; carbohydrate kinase 1338050..1338910 Lactobacillus reuteri DSM 20016 5188390 YP_001271887.1 CDS Lreu_1293 NC_009513.1 1338974 1340623 R PFAM: polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1338974..1340623) Lactobacillus reuteri DSM 20016 5188574 YP_001271888.1 CDS Lreu_1294 NC_009513.1 1340738 1341001 R PFAM: protein of unknown function UPF0150; hypothetical protein complement(1340738..1341001) Lactobacillus reuteri DSM 20016 5188350 YP_001271889.1 CDS leuS NC_009513.1 1341066 1343486 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1341066..1343486) Lactobacillus reuteri DSM 20016 5188374 YP_001271890.1 CDS Lreu_1296 NC_009513.1 1343808 1344995 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1343808..1344995) Lactobacillus reuteri DSM 20016 5188403 YP_001271891.1 CDS Lreu_1297 NC_009513.1 1345156 1345695 R PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I complement(1345156..1345695) Lactobacillus reuteri DSM 20016 5189656 YP_001271892.1 CDS Lreu_1298 NC_009513.1 1345718 1345915 R hypothetical protein complement(1345718..1345915) Lactobacillus reuteri DSM 20016 5188523 YP_001271893.1 CDS Lreu_1299 NC_009513.1 1346118 1347557 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1346118..1347557) Lactobacillus reuteri DSM 20016 5188423 YP_001271894.1 CDS Lreu_1300 NC_009513.1 1347681 1348136 D PFAM: ferric-uptake regulator; ferric uptake regulator family protein 1347681..1348136 Lactobacillus reuteri DSM 20016 5188444 YP_001271895.1 CDS Lreu_1301 NC_009513.1 1348168 1349514 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1348168..1349514) Lactobacillus reuteri DSM 20016 5188334 YP_001271896.1 CDS Lreu_1302 NC_009513.1 1349605 1350216 D PFAM: VanZ family protein; VanZ family protein 1349605..1350216 Lactobacillus reuteri DSM 20016 5188466 YP_001271897.1 CDS Lreu_1303 NC_009513.1 1350228 1350395 D hypothetical protein 1350228..1350395 Lactobacillus reuteri DSM 20016 5188282 YP_001271898.1 CDS Lreu_1304 NC_009513.1 1350563 1351087 D hypothetical protein 1350563..1351087 Lactobacillus reuteri DSM 20016 5188885 YP_001271899.1 CDS Lreu_1305 NC_009513.1 1351111 1351554 R hypothetical protein complement(1351111..1351554) Lactobacillus reuteri DSM 20016 5188617 YP_001271900.1 CDS Lreu_1306 NC_009513.1 1351554 1353056 R PFAM: UMUC domain protein DNA-repair protein; DNA-repair protein complement(1351554..1353056) Lactobacillus reuteri DSM 20016 5188544 YP_001271901.1 CDS Lreu_1307 NC_009513.1 1353183 1353614 R PFAM: heat shock protein Hsp20; heat shock protein Hsp20 complement(1353183..1353614) Lactobacillus reuteri DSM 20016 5189292 YP_001271902.1 CDS Lreu_1308 NC_009513.1 1353747 1354595 D PFAM: aldo/keto reductase; aldo/keto reductase 1353747..1354595 Lactobacillus reuteri DSM 20016 5189300 YP_001271903.1 CDS Lreu_1309 NC_009513.1 1354693 1355991 R catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase complement(1354693..1355991) Lactobacillus reuteri DSM 20016 5188208 YP_001271904.1 CDS Lreu_1310 NC_009513.1 1355984 1357225 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(1355984..1357225) Lactobacillus reuteri DSM 20016 5189101 YP_001271905.1 CDS Lreu_1311 NC_009513.1 1357521 1358282 D TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 1357521..1358282 Lactobacillus reuteri DSM 20016 5188677 YP_001271906.1 CDS Lreu_1312 NC_009513.1 1358404 1359111 R PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(1358404..1359111) Lactobacillus reuteri DSM 20016 5188614 YP_001271907.1 CDS Lreu_1313 NC_009513.1 1359440 1361140 R hypothetical protein complement(1359440..1361140) Lactobacillus reuteri DSM 20016 5188389 YP_001271908.1 CDS Lreu_1314 NC_009513.1 1361295 1362056 R PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(1361295..1362056) Lactobacillus reuteri DSM 20016 5188658 YP_001271909.1 CDS Lreu_1315 NC_009513.1 1362441 1363331 R hypothetical protein complement(1362441..1363331) Lactobacillus reuteri DSM 20016 5188179 YP_001271910.1 CDS Lreu_1316 NC_009513.1 1363343 1363921 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; ribonucleoside-triphosphate reductase class III activase subunit complement(1363343..1363921) Lactobacillus reuteri DSM 20016 5188664 YP_001271911.1 CDS Lreu_1317 NC_009513.1 1363987 1366221 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1363987..1366221) Lactobacillus reuteri DSM 20016 5188416 YP_001271912.1 CDS Lreu_1318 NC_009513.1 1366627 1368024 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 1366627..1368024 Lactobacillus reuteri DSM 20016 5188307 YP_001271913.1 CDS Lreu_1319 NC_009513.1 1368062 1368616 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1368062..1368616) Lactobacillus reuteri DSM 20016 5188625 YP_001271914.1 CDS Lreu_1320 NC_009513.1 1375411 1375659 R hypothetical protein complement(1375411..1375659) Lactobacillus reuteri DSM 20016 5190113 YP_001271915.1 CDS Lreu_1321 NC_009513.1 1375717 1376730 R PFAM: conserved hypothetical protein 374; hypothetical protein complement(1375717..1376730) Lactobacillus reuteri DSM 20016 5188354 YP_001271916.1 CDS Lreu_1322 NC_009513.1 1376730 1377758 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(1376730..1377758) Lactobacillus reuteri DSM 20016 5188150 YP_001271917.1 CDS Lreu_1323 NC_009513.1 1377761 1378978 R PFAM: glycosyl transferase, group 1; 1,2-diacylglycerol 3-glucosyltransferase complement(1377761..1378978) Lactobacillus reuteri DSM 20016 5189102 YP_001271918.1 CDS Lreu_1324 NC_009513.1 1379212 1380942 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein, mobile region; PEP-utilising protein domain protein; phosphoenolpyruvate--protein phosphotransferase complement(1379212..1380942) Lactobacillus reuteri DSM 20016 5188151 YP_001271919.1 CDS Lreu_1325 NC_009513.1 1380942 1381208 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; phosphocarrier protein HPr complement(1380942..1381208) Lactobacillus reuteri DSM 20016 5189235 YP_001271920.1 CDS Lreu_1326 NC_009513.1 1381330 1381515 R hypothetical protein complement(1381330..1381515) Lactobacillus reuteri DSM 20016 5188202 YP_001271921.1 CDS Lreu_1327 NC_009513.1 1381791 1383995 D PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 1381791..1383995 Lactobacillus reuteri DSM 20016 5188270 YP_001271922.1 CDS Lreu_1328 NC_009513.1 1384046 1384654 R hypothetical protein complement(1384046..1384654) Lactobacillus reuteri DSM 20016 5188512 YP_001271923.1 CDS Lreu_1329 NC_009513.1 1384804 1385529 D hypothetical protein 1384804..1385529 Lactobacillus reuteri DSM 20016 5188457 YP_001271924.1 CDS Lreu_1330 NC_009513.1 1385660 1386346 R hypothetical protein complement(1385660..1386346) Lactobacillus reuteri DSM 20016 5188244 YP_001271925.1 CDS Lreu_1331 NC_009513.1 1386346 1387209 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(1386346..1387209) Lactobacillus reuteri DSM 20016 5189178 YP_001271926.1 CDS Lreu_1332 NC_009513.1 1387190 1387573 R PFAM: regulatory protein GntR, HTH; GntR family transcriptional regulator complement(1387190..1387573) Lactobacillus reuteri DSM 20016 5189103 YP_001271927.1 CDS Lreu_1333 NC_009513.1 1387737 1388711 R hypothetical protein complement(1387737..1388711) Lactobacillus reuteri DSM 20016 5189196 YP_001271928.1 CDS Lreu_1334 NC_009513.1 1388645 1390087 R PFAM: glycosyl hydrolase 53 domain protein; glycosyl hydrolase 53 protein complement(1388645..1390087) Lactobacillus reuteri DSM 20016 5189143 YP_001271929.1 CDS Lreu_1336 NC_009513.1 1390653 1391207 R PFAM: cell wall binding repeat-containing protein; cell wall binding repeat-containing protein complement(1390653..1391207) Lactobacillus reuteri DSM 20016 5188226 YP_001271930.1 CDS Lreu_1339 NC_009513.1 1392265 1393116 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(1392265..1393116) Lactobacillus reuteri DSM 20016 5188174 YP_001271931.1 CDS Lreu_1342 NC_009513.1 1395628 1395975 R hypothetical protein complement(1395628..1395975) Lactobacillus reuteri DSM 20016 5188507 YP_001271932.1 CDS Lreu_1343 NC_009513.1 1395975 1396535 R PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1395975..1396535) Lactobacillus reuteri DSM 20016 5188497 YP_001271933.1 CDS Lreu_1344 NC_009513.1 1396605 1397234 D IS30 family transposase 1396605..1397234 Lactobacillus reuteri DSM 20016 5189330 YP_001271934.1 CDS Lreu_1346 NC_009513.1 1397706 1401797 R PFAM: cell wall binding repeat-containing protein; glycoside hydrolase, family 70; dextransucrase complement(1397706..1401797) Lactobacillus reuteri DSM 20016 5188643 YP_001271935.1 CDS Lreu_1348 NC_009513.1 1402329 1403210 R PFAM: NLP/P60 protein; cell wall binding repeat-containing protein; NLP/P60 protein complement(1402329..1403210) Lactobacillus reuteri DSM 20016 5189318 YP_001271936.1 CDS Lreu_1349 NC_009513.1 1403361 1404734 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase complement(1403361..1404734) Lactobacillus reuteri DSM 20016 5189058 YP_001271937.1 CDS Lreu_1350 NC_009513.1 1405386 1405844 D PFAM: transposase IS200-family protein; transposase IS200-family protein 1405386..1405844 Lactobacillus reuteri DSM 20016 5189078 YP_001271938.1 CDS prfC NC_009513.1 1406017 1407594 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(1406017..1407594) Lactobacillus reuteri DSM 20016 5188511 YP_001271939.1 CDS Lreu_1352 NC_009513.1 1407781 1409247 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1407781..1409247 Lactobacillus reuteri DSM 20016 5189181 YP_001271940.1 CDS Lreu_1353 NC_009513.1 1409291 1410859 R hypothetical protein complement(1409291..1410859) Lactobacillus reuteri DSM 20016 5189134 YP_001271941.1 CDS Lreu_1354 NC_009513.1 1410843 1411970 R PFAM: protein of unknown function UPF0118; hypothetical protein complement(1410843..1411970) Lactobacillus reuteri DSM 20016 5188338 YP_001271942.1 CDS Lreu_1355 NC_009513.1 1412079 1413677 R hypothetical protein complement(1412079..1413677) Lactobacillus reuteri DSM 20016 5188602 YP_001271943.1 CDS Lreu_1356 NC_009513.1 1413861 1415069 R hypothetical protein complement(1413861..1415069) Lactobacillus reuteri DSM 20016 5189005 YP_001271944.1 CDS Lreu_1357 NC_009513.1 1415299 1415931 D IS30 family transposase 1415299..1415931 Lactobacillus reuteri DSM 20016 5188259 YP_001271945.1 CDS Lreu_1358 NC_009513.1 1416319 1416918 D hypothetical protein 1416319..1416918 Lactobacillus reuteri DSM 20016 5188207 YP_001271946.1 CDS Lreu_1360 NC_009513.1 1417782 1418519 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(1417782..1418519) Lactobacillus reuteri DSM 20016 5188560 YP_001271947.1 CDS Lreu_1361 NC_009513.1 1418521 1419750 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(1418521..1419750) Lactobacillus reuteri DSM 20016 5188373 YP_001271948.1 CDS Lreu_1362 NC_009513.1 1420249 1421223 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(1420249..1421223) Lactobacillus reuteri DSM 20016 5188432 YP_001271949.1 CDS Lreu_1363 NC_009513.1 1421336 1421905 R hypothetical protein complement(1421336..1421905) Lactobacillus reuteri DSM 20016 5188371 YP_001271950.1 CDS Lreu_1364 NC_009513.1 1421973 1423235 R PFAM: NLP/P60 protein; NLP/P60 protein complement(1421973..1423235) Lactobacillus reuteri DSM 20016 5188191 YP_001271951.1 CDS Lreu_1365 NC_009513.1 1423515 1425059 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase complement(1423515..1425059) Lactobacillus reuteri DSM 20016 5188653 YP_001271952.1 CDS Lreu_1366 NC_009513.1 1425439 1425897 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(1425439..1425897) Lactobacillus reuteri DSM 20016 5188241 YP_001271953.1 CDS Lreu_1367 NC_009513.1 1426106 1427530 R PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase complement(1426106..1427530) Lactobacillus reuteri DSM 20016 5188327 YP_001271954.1 CDS Lreu_1368 NC_009513.1 1427696 1428763 R PFAM: acyltransferase 3; acyltransferase 3 complement(1427696..1428763) Lactobacillus reuteri DSM 20016 5189307 YP_001271955.1 CDS Lreu_1369 NC_009513.1 1428775 1429791 R hypothetical protein complement(1428775..1429791) Lactobacillus reuteri DSM 20016 5189266 YP_001271956.1 CDS Lreu_1370 NC_009513.1 1429806 1430855 R PFAM: glycosyl transferase, group 1; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(1429806..1430855) Lactobacillus reuteri DSM 20016 5188375 YP_001271957.1 CDS Lreu_1371 NC_009513.1 1430872 1432290 R PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; polysaccharide biosynthesis protein complement(1430872..1432290) Lactobacillus reuteri DSM 20016 5188377 YP_001271958.1 CDS Lreu_1372 NC_009513.1 1432493 1433122 R PFAM: lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein complement(1432493..1433122) Lactobacillus reuteri DSM 20016 5189334 YP_001271959.1 CDS Lreu_1373 NC_009513.1 1433119 1434315 R hypothetical protein complement(1433119..1434315) Lactobacillus reuteri DSM 20016 5188719 YP_001271960.1 CDS Lreu_1374 NC_009513.1 1434533 1435651 R PFAM: UDP-galactopyranose mutase; UDP-galactopyranose mutase complement(1434533..1435651) Lactobacillus reuteri DSM 20016 5189105 YP_001271961.1 CDS Lreu_1375 NC_009513.1 1435677 1436324 R PFAM: sugar transferase; undecaprenyl-phosphate galactose phosphotransferase complement(1435677..1436324) Lactobacillus reuteri DSM 20016 5188360 YP_001271962.1 CDS Lreu_1376 NC_009513.1 1436336 1437265 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(1436336..1437265) Lactobacillus reuteri DSM 20016 5189061 YP_001271963.1 CDS Lreu_1377 NC_009513.1 1437283 1438050 R hypothetical protein complement(1437283..1438050) Lactobacillus reuteri DSM 20016 5188216 YP_001271964.1 CDS recX NC_009513.1 1438125 1438919 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1438125..1438919) Lactobacillus reuteri DSM 20016 5188219 YP_001271965.1 CDS Lreu_1379 NC_009513.1 1439021 1439236 D hypothetical protein 1439021..1439236 Lactobacillus reuteri DSM 20016 5188236 YP_001271966.1 CDS Lreu_1380 NC_009513.1 1439258 1439485 D hypothetical protein 1439258..1439485 Lactobacillus reuteri DSM 20016 5188424 YP_001271967.1 CDS Lreu_1381 NC_009513.1 1439536 1440426 R TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; ribonuclease BN complement(1439536..1440426) Lactobacillus reuteri DSM 20016 5188656 YP_001271968.1 CDS Lreu_1382 NC_009513.1 1440758 1442263 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1440758..1442263) Lactobacillus reuteri DSM 20016 5189267 YP_001271969.1 CDS Lreu_1383 NC_009513.1 1442594 1444015 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 1442594..1444015 Lactobacillus reuteri DSM 20016 5188278 YP_001271970.1 CDS Lreu_1384 NC_009513.1 1444031 1445152 D associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 1444031..1445152 Lactobacillus reuteri DSM 20016 5190080 YP_001271971.1 CDS Lreu_1385 NC_009513.1 1445215 1446072 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1445215..1446072) Lactobacillus reuteri DSM 20016 5188670 YP_001271972.1 CDS Lreu_1386 NC_009513.1 1446186 1446644 D TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; flavodoxin 1446186..1446644 Lactobacillus reuteri DSM 20016 5190009 YP_001271973.1 CDS Lreu_1387 NC_009513.1 1446637 1447074 D PFAM: GtrA family protein; GtrA family protein 1446637..1447074 Lactobacillus reuteri DSM 20016 5189706 YP_001271974.1 CDS Lreu_1388 NC_009513.1 1447169 1447483 D hypothetical protein 1447169..1447483 Lactobacillus reuteri DSM 20016 5188421 YP_001271975.1 CDS Lreu_1389 NC_009513.1 1447681 1448802 R PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(1447681..1448802) Lactobacillus reuteri DSM 20016 5188495 YP_001271976.1 CDS Lreu_1390 NC_009513.1 1449014 1450315 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase complement(1449014..1450315) Lactobacillus reuteri DSM 20016 5188471 YP_001271977.1 CDS Lreu_1391 NC_009513.1 1450327 1451346 R PFAM: oxidoreductase domain protein; oxidoreductase domain-containing protein complement(1450327..1451346) Lactobacillus reuteri DSM 20016 5188255 YP_001271978.1 CDS Lreu_1392 NC_009513.1 1451507 1451869 D hypothetical protein 1451507..1451869 Lactobacillus reuteri DSM 20016 5189113 YP_001271979.1 CDS Lreu_1393 NC_009513.1 1451901 1452488 R PFAM: conserved hypothetical protein 730; hypothetical protein complement(1451901..1452488) Lactobacillus reuteri DSM 20016 5189186 YP_001271980.1 CDS Lreu_1394 NC_009513.1 1452493 1453416 R PFAM: Lactate/malate dehydrogenase; malate dehydrogenase (NAD) complement(1452493..1453416) Lactobacillus reuteri DSM 20016 5188657 YP_001271981.1 CDS Lreu_1395 NC_009513.1 1453523 1455052 R glutamate--cysteine ligase complement(1453523..1455052) Lactobacillus reuteri DSM 20016 5188565 YP_001271982.1 CDS Lreu_1396 NC_009513.1 1455189 1456220 R hypothetical protein complement(1455189..1456220) Lactobacillus reuteri DSM 20016 5188529 YP_001271983.1 CDS Lreu_1397 NC_009513.1 1456210 1456665 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1456210..1456665) Lactobacillus reuteri DSM 20016 5188205 YP_001271984.1 CDS Lreu_1398 NC_009513.1 1456802 1457509 D PFAM: protein of unknown function UPF0005; hypothetical protein 1456802..1457509 Lactobacillus reuteri DSM 20016 5188513 YP_001271985.1 CDS Lreu_1399 NC_009513.1 1457561 1458115 R hypothetical protein complement(1457561..1458115) Lactobacillus reuteri DSM 20016 5188357 YP_001271986.1 CDS Lreu_1400 NC_009513.1 1458176 1458688 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1458176..1458688) Lactobacillus reuteri DSM 20016 5188275 YP_001271987.1 CDS Lreu_1401 NC_009513.1 1458835 1459269 D PFAM: LytTr DNA-binding region; response regulator receiver protein 1458835..1459269 Lactobacillus reuteri DSM 20016 5188342 YP_001271988.1 CDS Lreu_1402 NC_009513.1 1459266 1459712 D hypothetical protein 1459266..1459712 Lactobacillus reuteri DSM 20016 5189291 YP_001271989.1 CDS Lreu_1403 NC_009513.1 1459721 1460644 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase complement(1459721..1460644) Lactobacillus reuteri DSM 20016 5188596 YP_001271990.1 CDS Lreu_1404 NC_009513.1 1460896 1461333 D coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein 1460896..1461333 Lactobacillus reuteri DSM 20016 5188686 YP_001271991.1 CDS Lreu_1405 NC_009513.1 1461474 1462199 R TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; IS605 family transposase OrfB complement(1461474..1462199) Lactobacillus reuteri DSM 20016 5189236 YP_001271992.1 CDS Lreu_1406 NC_009513.1 1462326 1462502 D hypothetical protein 1462326..1462502 Lactobacillus reuteri DSM 20016 5188718 YP_001271993.1 CDS Lreu_1407 NC_009513.1 1462557 1463015 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase complement(1462557..1463015) Lactobacillus reuteri DSM 20016 5189282 YP_001271994.1 CDS Lreu_1408 NC_009513.1 1463030 1463683 R PFAM: nitroreductase; nitroreductase complement(1463030..1463683) Lactobacillus reuteri DSM 20016 5189043 YP_001271995.1 CDS Lreu_1409 NC_009513.1 1463767 1464306 R hypothetical protein complement(1463767..1464306) Lactobacillus reuteri DSM 20016 5189183 YP_001271996.1 CDS Lreu_1410 NC_009513.1 1464377 1464859 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1464377..1464859) Lactobacillus reuteri DSM 20016 5188929 YP_001271997.1 CDS Lreu_1411 NC_009513.1 1465004 1466329 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1465004..1466329) Lactobacillus reuteri DSM 20016 5188539 YP_001271998.1 CDS Lreu_1412 NC_009513.1 1466561 1467742 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ammonium transporter 1466561..1467742 Lactobacillus reuteri DSM 20016 5188520 YP_001271999.1 CDS Lreu_1413 NC_009513.1 1467908 1468348 D hypothetical protein 1467908..1468348 Lactobacillus reuteri DSM 20016 5189115 YP_001272000.1 CDS Lreu_1414 NC_009513.1 1468872 1469318 R hypothetical protein complement(1468872..1469318) Lactobacillus reuteri DSM 20016 5188680 YP_001272001.1 CDS Lreu_1415 NC_009513.1 1469388 1469975 R hypothetical protein complement(1469388..1469975) Lactobacillus reuteri DSM 20016 5188537 YP_001272002.1 CDS Lreu_1416 NC_009513.1 1470158 1472920 R PFAM: type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; type III restriction protein, res subunit complement(1470158..1472920) Lactobacillus reuteri DSM 20016 5188525 YP_001272003.1 CDS Lreu_1417 NC_009513.1 1472991 1473305 R hypothetical protein complement(1472991..1473305) Lactobacillus reuteri DSM 20016 5189071 YP_001272004.1 CDS Lreu_1418 NC_009513.1 1473596 1474447 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 1473596..1474447 Lactobacillus reuteri DSM 20016 5188501 YP_001272005.1 CDS Lreu_1419 NC_009513.1 1474449 1475300 D hypothetical protein 1474449..1475300 Lactobacillus reuteri DSM 20016 5189310 YP_001272006.1 CDS Lreu_1420 NC_009513.1 1475303 1475755 D PFAM: LytTr DNA-binding region; response regulator receiver protein 1475303..1475755 Lactobacillus reuteri DSM 20016 5188395 YP_001272007.1 CDS Lreu_1421 NC_009513.1 1475757 1476143 D hypothetical protein 1475757..1476143 Lactobacillus reuteri DSM 20016 5188391 YP_001272008.1 CDS Lreu_1422 NC_009513.1 1476565 1477536 R PFAM: plasmid pRiA4b ORF-3 family protein; plasmid pRiA4b ORF-3 family protein complement(1476565..1477536) Lactobacillus reuteri DSM 20016 5189016 YP_001272009.1 CDS Lreu_1423 NC_009513.1 1477581 1478111 R hypothetical protein complement(1477581..1478111) Lactobacillus reuteri DSM 20016 5188464 YP_001272010.1 CDS Lreu_1425 NC_009513.1 1478989 1479627 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator complement(1478989..1479627) Lactobacillus reuteri DSM 20016 5188473 YP_001272011.1 CDS Lreu_1426 NC_009513.1 1479652 1480197 R hypothetical protein complement(1479652..1480197) Lactobacillus reuteri DSM 20016 5188372 YP_001272012.1 CDS Lreu_1427 NC_009513.1 1480190 1480426 R PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(1480190..1480426) Lactobacillus reuteri DSM 20016 5188608 YP_001272013.1 CDS Lreu_1430 NC_009513.1 1482944 1484326 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; RNA-directed DNA polymerase complement(1482944..1484326) Lactobacillus reuteri DSM 20016 5188433 YP_001272014.1 CDS Lreu_1431 NC_009513.1 1484849 1485343 R PFAM: isochorismatase hydrolase; isochorismatase hydrolase complement(1484849..1485343) Lactobacillus reuteri DSM 20016 5188735 YP_001272015.1 CDS Lreu_1432 NC_009513.1 1485569 1488895 R PFAM: helicase domain protein; type III restriction protein, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; type III restriction protein, res subunit complement(1485569..1488895) Lactobacillus reuteri DSM 20016 5188550 YP_001272016.1 CDS Lreu_1433 NC_009513.1 1488888 1490006 R PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit complement(1488888..1490006) Lactobacillus reuteri DSM 20016 5188404 YP_001272017.1 CDS Lreu_1434 NC_009513.1 1490032 1491000 R PFAM: phage integrase family protein; phage integrase family protein complement(1490032..1491000) Lactobacillus reuteri DSM 20016 5188999 YP_001272018.1 CDS Lreu_1435 NC_009513.1 1491046 1492068 R PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit complement(1491046..1492068) Lactobacillus reuteri DSM 20016 5188687 YP_001272019.1 CDS Lreu_1436 NC_009513.1 1492110 1493663 R PFAM: N-6 DNA methylase; N-6 DNA methylase complement(1492110..1493663) Lactobacillus reuteri DSM 20016 5189815 YP_001272020.1 CDS Lreu_1437 NC_009513.1 1494434 1495642 R hypothetical protein complement(1494434..1495642) Lactobacillus reuteri DSM 20016 5189351 YP_001272021.1 CDS Lreu_1438 NC_009513.1 1496226 1497605 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; protein of unknown function Met10; (Uracil-5)-methyltransferase; RNA methyltransferase complement(1496226..1497605) Lactobacillus reuteri DSM 20016 5188659 YP_001272022.1 CDS Lreu_1439 NC_009513.1 1498090 1499103 R similar to YegS from E. coli; lipid kinase complement(1498090..1499103) Lactobacillus reuteri DSM 20016 5189232 YP_001272023.1 CDS gatB NC_009513.1 1499115 1500539 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1499115..1500539) Lactobacillus reuteri DSM 20016 5188302 YP_001272024.1 CDS gatA NC_009513.1 1500541 1502013 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1500541..1502013) Lactobacillus reuteri DSM 20016 5189091 YP_001272025.1 CDS gatC NC_009513.1 1502013 1502330 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1502013..1502330) Lactobacillus reuteri DSM 20016 5189842 YP_001272026.1 CDS Lreu_1443 NC_009513.1 1502482 1503597 R PFAM: CamS sex pheromone cAM373 family protein; CamS sex pheromone cAM373 family protein complement(1502482..1503597) Lactobacillus reuteri DSM 20016 5188211 YP_001272027.1 CDS Lreu_1444 NC_009513.1 1503601 1505643 R TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like; NAD-dependent DNA ligase complement(1503601..1505643) Lactobacillus reuteri DSM 20016 5188720 YP_001272028.1 CDS Lreu_1445 NC_009513.1 1505662 1507935 R TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; ATP-dependent DNA helicase PcrA complement(1505662..1507935) Lactobacillus reuteri DSM 20016 5188713 YP_001272029.1 CDS Lreu_1446 NC_009513.1 1508092 1509225 R PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; phosphoribosylaminoimidazole carboxylase complement(1508092..1509225) Lactobacillus reuteri DSM 20016 5188646 YP_001272030.1 CDS Lreu_1447 NC_009513.1 1509242 1509817 R TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; xanthine phosphoribosyltransferase complement(1509242..1509817) Lactobacillus reuteri DSM 20016 5188598 YP_001272031.1 CDS Lreu_1448 NC_009513.1 1509835 1510461 R PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase complement(1509835..1510461) Lactobacillus reuteri DSM 20016 5188603 YP_001272032.1 CDS Lreu_1449 NC_009513.1 1510611 1511384 R TIGRFAM: acetoin reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; acetoin reductase complement(1510611..1511384) Lactobacillus reuteri DSM 20016 5188487 YP_001272033.1 CDS Lreu_1450 NC_009513.1 1511500 1511895 R PFAM: ribosomal protein S9; 30S ribosomal protein S9 complement(1511500..1511895) Lactobacillus reuteri DSM 20016 5188201 YP_001272034.1 CDS rplM NC_009513.1 1511909 1512352 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1511909..1512352) Lactobacillus reuteri DSM 20016 5189333 YP_001272035.1 CDS truA NC_009513.1 1512458 1513228 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1512458..1513228) Lactobacillus reuteri DSM 20016 5188242 YP_001272036.1 CDS Lreu_1453 NC_009513.1 1513248 1514051 R PFAM: cobalt transport protein; cobalt transport protein complement(1513248..1514051) Lactobacillus reuteri DSM 20016 5188467 YP_001272037.1 CDS Lreu_1454 NC_009513.1 1514044 1514910 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(1514044..1514910) Lactobacillus reuteri DSM 20016 5189220 YP_001272038.1 CDS Lreu_1455 NC_009513.1 1514886 1515713 R PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(1514886..1515713) Lactobacillus reuteri DSM 20016 5188225 YP_001272039.1 CDS rplQ NC_009513.1 1515933 1516316 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1515933..1516316) Lactobacillus reuteri DSM 20016 5189138 YP_001272040.1 CDS Lreu_1457 NC_009513.1 1516351 1517295 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1516351..1517295) Lactobacillus reuteri DSM 20016 5188443 YP_001272041.1 CDS Lreu_1458 NC_009513.1 1517381 1517770 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1517381..1517770) Lactobacillus reuteri DSM 20016 5188376 YP_001272042.1 CDS rpsM NC_009513.1 1517805 1518170 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1517805..1518170) Lactobacillus reuteri DSM 20016 5189953 YP_001272043.1 CDS rpmJ NC_009513.1 1518202 1518321 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(1518202..1518321) Lactobacillus reuteri DSM 20016 5188264 YP_001272044.1 CDS infA NC_009513.1 1518358 1518576 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1518358..1518576) Lactobacillus reuteri DSM 20016 5188218 YP_001272045.1 CDS adk NC_009513.1 1518710 1519369 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(1518710..1519369) Lactobacillus reuteri DSM 20016 5188212 YP_001272046.1 CDS Lreu_1463 NC_009513.1 1519369 1520685 R TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; protein translocase subunit SecY complement(1519369..1520685) Lactobacillus reuteri DSM 20016 5188351 YP_001272047.1 CDS rplO NC_009513.1 1520687 1521121 R late assembly protein; 50S ribosomal protein L15 complement(1520687..1521121) Lactobacillus reuteri DSM 20016 5188173 YP_001272048.1 CDS rpmD NC_009513.1 1521153 1521335 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1521153..1521335) Lactobacillus reuteri DSM 20016 5188561 YP_001272049.1 CDS rpsE NC_009513.1 1521351 1521860 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1521351..1521860) Lactobacillus reuteri DSM 20016 5188694 YP_001272050.1 CDS rplR NC_009513.1 1521882 1522238 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1521882..1522238) Lactobacillus reuteri DSM 20016 5189209 YP_001272051.1 CDS rplF NC_009513.1 1522301 1522837 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1522301..1522837) Lactobacillus reuteri DSM 20016 5189893 YP_001272052.1 CDS rpsH NC_009513.1 1522867 1523265 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1522867..1523265) Lactobacillus reuteri DSM 20016 5188568 YP_001272053.1 CDS rpsN NC_009513.1 1523298 1523483 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1523298..1523483) Lactobacillus reuteri DSM 20016 5189320 YP_001272054.1 CDS rplE NC_009513.1 1523499 1524041 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1523499..1524041) Lactobacillus reuteri DSM 20016 5189302 YP_001272055.1 CDS rplX NC_009513.1 1524070 1524378 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1524070..1524378) Lactobacillus reuteri DSM 20016 5189139 YP_001272056.1 CDS rplN NC_009513.1 1524414 1524782 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1524414..1524782) Lactobacillus reuteri DSM 20016 5189256 YP_001272057.1 CDS Lreu_1474 NC_009513.1 1524852 1525118 R PFAM: ribosomal protein S17; 30S ribosomal protein S17 complement(1524852..1525118) Lactobacillus reuteri DSM 20016 5188352 YP_001272058.1 CDS Lreu_1475 NC_009513.1 1525143 1525349 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1525143..1525349) Lactobacillus reuteri DSM 20016 5188358 YP_001272059.1 CDS rplP NC_009513.1 1525339 1525773 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1525339..1525773) Lactobacillus reuteri DSM 20016 5188224 YP_001272060.1 CDS rpsC NC_009513.1 1525777 1526442 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1525777..1526442) Lactobacillus reuteri DSM 20016 5188217 YP_001272061.1 CDS rplV NC_009513.1 1526455 1526802 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1526455..1526802) Lactobacillus reuteri DSM 20016 5188228 YP_001272062.1 CDS rpsS NC_009513.1 1526820 1527098 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1526820..1527098) Lactobacillus reuteri DSM 20016 5188493 YP_001272063.1 CDS rplB NC_009513.1 1527139 1527984 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1527139..1527984) Lactobacillus reuteri DSM 20016 5188198 YP_001272064.1 CDS rplW NC_009513.1 1528010 1528306 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1528010..1528306) Lactobacillus reuteri DSM 20016 5188542 YP_001272065.1 CDS rplD NC_009513.1 1528306 1528929 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1528306..1528929) Lactobacillus reuteri DSM 20016 5188248 YP_001272066.1 CDS rplC NC_009513.1 1528951 1529610 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1528951..1529610) Lactobacillus reuteri DSM 20016 5188492 YP_001272067.1 CDS rpsJ NC_009513.1 1529659 1529967 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1529659..1529967) Lactobacillus reuteri DSM 20016 5188570 YP_001272068.1 CDS Lreu_1485 NC_009513.1 1530684 1531715 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(1530684..1531715) Lactobacillus reuteri DSM 20016 5188502 YP_001272069.1 CDS fusA NC_009513.1 1531918 1534005 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1531918..1534005) Lactobacillus reuteri DSM 20016 5189876 YP_001272070.1 CDS Lreu_1487 NC_009513.1 1534144 1534614 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1534144..1534614) Lactobacillus reuteri DSM 20016 5188176 YP_001272071.1 CDS rpsL NC_009513.1 1534635 1535054 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1534635..1535054) Lactobacillus reuteri DSM 20016 5188446 YP_001272072.1 CDS Lreu_1489 NC_009513.1 1535322 1535996 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; peptidase A24A domain-containing protein 1535322..1535996 Lactobacillus reuteri DSM 20016 5188551 YP_001272073.1 CDS Lreu_1490 NC_009513.1 1536035 1537210 R hypothetical protein complement(1536035..1537210) Lactobacillus reuteri DSM 20016 5188486 YP_001272074.1 CDS Lreu_1491 NC_009513.1 1537280 1540915 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1537280..1540915) Lactobacillus reuteri DSM 20016 5188626 YP_001272075.1 CDS rpoB NC_009513.1 1540959 1544567 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1540959..1544567) Lactobacillus reuteri DSM 20016 5188381 YP_001272076.1 CDS Lreu_1493 NC_009513.1 1544804 1545406 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(1544804..1545406) Lactobacillus reuteri DSM 20016 5188633 YP_001272077.1 CDS Lreu_1494 NC_009513.1 1545692 1548184 R PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase complement(1545692..1548184) Lactobacillus reuteri DSM 20016 5188227 YP_001272078.1 CDS Lreu_1495 NC_009513.1 1548199 1548666 R PFAM: Firmicute transcriptional repressor of class III stress genes; transcriptional repressor CtsR complement(1548199..1548666) Lactobacillus reuteri DSM 20016 5188312 YP_001272079.1 CDS Lreu_1496 NC_009513.1 1548840 1549868 R similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase complement(1548840..1549868) Lactobacillus reuteri DSM 20016 5188526 YP_001272080.1 CDS Lreu_1498 NC_009513.1 1551822 1552463 R PFAM: deoxynucleoside kinase; deoxyadenosine kinase complement(1551822..1552463) Lactobacillus reuteri DSM 20016 5188615 YP_001272081.1 CDS Lreu_1499 NC_009513.1 1552723 1553181 D PFAM: transposase IS200-family protein; transposase IS200-family protein 1552723..1553181 Lactobacillus reuteri DSM 20016 5188871 YP_001272082.1 CDS Lreu_1500 NC_009513.1 1553332 1554807 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1553332..1554807) Lactobacillus reuteri DSM 20016 5188579 YP_001272083.1 CDS Lreu_1501 NC_009513.1 1555147 1555602 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1555147..1555602) Lactobacillus reuteri DSM 20016 5188619 YP_001272084.1 CDS Lreu_1502 NC_009513.1 1555673 1556347 R PFAM: phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(1555673..1556347) Lactobacillus reuteri DSM 20016 5188420 YP_001272085.1 CDS Lreu_1503 NC_009513.1 1556403 1556876 R hypothetical protein complement(1556403..1556876) Lactobacillus reuteri DSM 20016 5189137 YP_001272086.1 CDS Lreu_1504 NC_009513.1 1556888 1557643 R PFAM: protein of unknown function DUF1212; hypothetical protein complement(1556888..1557643) Lactobacillus reuteri DSM 20016 5189034 YP_001272087.1 CDS Lreu_1505 NC_009513.1 1557752 1557952 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding protein family protein complement(1557752..1557952) Lactobacillus reuteri DSM 20016 5189315 YP_001272088.1 CDS Lreu_1506 NC_009513.1 1558099 1558773 R PFAM: iron dependent repressor; FeoA family protein; iron dependent repressor complement(1558099..1558773) Lactobacillus reuteri DSM 20016 5189211 YP_001272089.1 CDS Lreu_1507 NC_009513.1 1558956 1559876 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1558956..1559876 Lactobacillus reuteri DSM 20016 5189255 YP_001272090.1 CDS Lreu_1508 NC_009513.1 1559942 1560634 R PFAM: protein of unknown function DUF125, transmembrane; hypothetical protein complement(1559942..1560634) Lactobacillus reuteri DSM 20016 5189173 YP_001272091.1 CDS Lreu_1509 NC_009513.1 1560649 1561332 R PFAM: protein of unknown function DUF125, transmembrane; hypothetical protein complement(1560649..1561332) Lactobacillus reuteri DSM 20016 5189156 YP_001272092.1 CDS Lreu_1510 NC_009513.1 1561504 1561980 R PFAM: UspA domain protein; UspA domain-containing protein complement(1561504..1561980) Lactobacillus reuteri DSM 20016 5189082 YP_001272093.1 CDS Lreu_1511 NC_009513.1 1562258 1562998 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 1562258..1562998 Lactobacillus reuteri DSM 20016 5188514 YP_001272094.1 CDS Lreu_1512 NC_009513.1 1563011 1563841 D PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; extracellular solute-binding protein 1563011..1563841 Lactobacillus reuteri DSM 20016 5189096 YP_001272095.1 CDS Lreu_1513 NC_009513.1 1563841 1564479 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane protein 1563841..1564479 Lactobacillus reuteri DSM 20016 5188717 YP_001272096.1 CDS Lreu_1514 NC_009513.1 1564492 1565145 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane protein 1564492..1565145 Lactobacillus reuteri DSM 20016 5189147 YP_001272097.1 CDS Lreu_1515 NC_009513.1 1565258 1566445 R PFAM: Abortive infection protein; abortive infection protein complement(1565258..1566445) Lactobacillus reuteri DSM 20016 5188506 YP_001272098.1 CDS Lreu_1516 NC_009513.1 1566593 1568449 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein complement(1566593..1568449) Lactobacillus reuteri DSM 20016 5188682 YP_001272099.1 CDS Lreu_1517 NC_009513.1 1568724 1569071 R hypothetical protein complement(1568724..1569071) Lactobacillus reuteri DSM 20016 5188295 YP_001272100.1 CDS Lreu_1518 NC_009513.1 1569150 1569596 R PFAM: regulatory protein, MerR; MerR family transcriptional regulator complement(1569150..1569596) Lactobacillus reuteri DSM 20016 5188691 YP_001272101.1 CDS Lreu_1519 NC_009513.1 1569729 1571237 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 1569729..1571237 Lactobacillus reuteri DSM 20016 5189309 YP_001272102.1 CDS Lreu_1520 NC_009513.1 1571237 1571965 D hypothetical protein 1571237..1571965 Lactobacillus reuteri DSM 20016 5189237 YP_001272103.1 CDS Lreu_1521 NC_009513.1 1572176 1573048 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RluA family pseudouridine synthase complement(1572176..1573048) Lactobacillus reuteri DSM 20016 5189222 YP_001272104.1 CDS Lreu_1522 NC_009513.1 1573355 1575940 D PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; hypothetical protein 1573355..1575940 Lactobacillus reuteri DSM 20016 5189136 YP_001272105.1 CDS Lreu_1523 NC_009513.1 1575999 1576571 R TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; DJ-1 family protein complement(1575999..1576571) Lactobacillus reuteri DSM 20016 5189263 YP_001272106.1 CDS Lreu_1524 NC_009513.1 1576584 1577567 R PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(1576584..1577567) Lactobacillus reuteri DSM 20016 5189328 YP_001272107.1 CDS Lreu_1525 NC_009513.1 1577616 1579175 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1577616..1579175) Lactobacillus reuteri DSM 20016 5189277 YP_001272108.1 CDS Lreu_1526 NC_009513.1 1579252 1579905 R PFAM: Uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily protein complement(1579252..1579905) Lactobacillus reuteri DSM 20016 5189217 YP_001272109.1 CDS Lreu_1527 NC_009513.1 1579918 1581285 R PFAM: protein of unknown function DUF1212; hypothetical protein complement(1579918..1581285) Lactobacillus reuteri DSM 20016 5189127 YP_001272110.1 CDS Lreu_1528 NC_009513.1 1581341 1582228 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1581341..1582228) Lactobacillus reuteri DSM 20016 5189035 YP_001272111.1 CDS Lreu_1529 NC_009513.1 1582394 1583815 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; TRAP C4-dicarboxylate transport system permease DctM subunit; anion transporter complement(1582394..1583815) Lactobacillus reuteri DSM 20016 5190032 YP_001272112.1 CDS Lreu_1530 NC_009513.1 1583888 1585282 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c complement(1583888..1585282) Lactobacillus reuteri DSM 20016 5189055 YP_001272113.1 CDS fumC NC_009513.1 1585401 1586789 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1585401..1586789) Lactobacillus reuteri DSM 20016 5188576 YP_001272114.1 CDS Lreu_1532 NC_009513.1 1587084 1588712 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(1587084..1588712) Lactobacillus reuteri DSM 20016 5188612 YP_001272115.1 CDS Lreu_1533 NC_009513.1 1588849 1589730 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1588849..1589730 Lactobacillus reuteri DSM 20016 5188220 YP_001272116.1 CDS Lreu_1534 NC_009513.1 1589930 1590523 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; peptidyl-prolyl isomerase complement(1589930..1590523) Lactobacillus reuteri DSM 20016 5188314 YP_001272117.1 CDS Lreu_1535 NC_009513.1 1590597 1591643 R TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; zinc-binding alcohol dehydrogenase complement(1590597..1591643) Lactobacillus reuteri DSM 20016 5188628 YP_001272118.1 CDS Lreu_1536 NC_009513.1 1591694 1593232 R PFAM: plasmid pRiA4b ORF-3 family protein; plasmid pRiA4b ORF-3 family protein complement(1591694..1593232) Lactobacillus reuteri DSM 20016 5188284 YP_001272119.1 CDS Lreu_1537 NC_009513.1 1593376 1594773 D hypothetical protein 1593376..1594773 Lactobacillus reuteri DSM 20016 5188154 YP_001272120.1 CDS Lreu_1538 NC_009513.1 1595155 1596192 D PFAM: Aldose 1-epimerase; aldose 1-epimerase 1595155..1596192 Lactobacillus reuteri DSM 20016 5189919 YP_001272121.1 CDS Lreu_1539 NC_009513.1 1596271 1596711 R hypothetical protein complement(1596271..1596711) Lactobacillus reuteri DSM 20016 5189118 YP_001272122.1 CDS Lreu_1540 NC_009513.1 1596889 1598133 R PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; serine-type D-Ala-D-Ala carboxypeptidase complement(1596889..1598133) Lactobacillus reuteri DSM 20016 5189198 YP_001272123.1 CDS Lreu_1541 NC_009513.1 1598327 1599124 D PFAM: penicillin-binding protein, transpeptidase; penicillin-binding protein, transpeptidase 1598327..1599124 Lactobacillus reuteri DSM 20016 5189858 YP_001272124.1 CDS Lreu_1542 NC_009513.1 1599277 1600734 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; sucrose phosphorylase complement(1599277..1600734) Lactobacillus reuteri DSM 20016 5189265 YP_001272125.1 CDS Lreu_1543 NC_009513.1 1600761 1601978 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1600761..1601978) Lactobacillus reuteri DSM 20016 5188447 YP_001272126.1 CDS Lreu_1544 NC_009513.1 1602275 1603609 R TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; hypothetical protein complement(1602275..1603609) Lactobacillus reuteri DSM 20016 5188425 YP_001272127.1 CDS Lreu_1545 NC_009513.1 1603622 1605139 R PFAM: C4-dicarboxylate anaerobic carrier; C4-dicarboxylate anaerobic carrier complement(1603622..1605139) Lactobacillus reuteri DSM 20016 5188692 YP_001272128.1 CDS Lreu_1546 NC_009513.1 1605274 1606218 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; Dyp-type peroxidase family protein 1605274..1606218 Lactobacillus reuteri DSM 20016 5188235 YP_001272129.1 CDS Lreu_1547 NC_009513.1 1606482 1607033 D PFAM: ABC transporter related; ABC transporter-like protien 1606482..1607033 Lactobacillus reuteri DSM 20016 5188700 YP_001272130.1 CDS Lreu_1548 NC_009513.1 1607033 1607950 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 1607033..1607950 Lactobacillus reuteri DSM 20016 5189210 YP_001272131.1 CDS Lreu_1549 NC_009513.1 1608177 1608893 R esterase/lipase-like protein complement(1608177..1608893) Lactobacillus reuteri DSM 20016 5188399 YP_001272132.1 CDS Lreu_1552 NC_009513.1 1610184 1610720 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) complement(1610184..1610720) Lactobacillus reuteri DSM 20016 5189051 YP_001272133.1 CDS Lreu_1553 NC_009513.1 1610918 1611832 R PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; cystathionine beta-synthase complement(1610918..1611832) Lactobacillus reuteri DSM 20016 5188348 YP_001272134.1 CDS Lreu_1554 NC_009513.1 1612282 1613214 D PFAM: ferrochelatase; ferrochelatase 1612282..1613214 Lactobacillus reuteri DSM 20016 5188273 YP_001272135.1 CDS Lreu_1555 NC_009513.1 1613217 1614521 D TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; Mn2+/Fe2+ transporter 1613217..1614521 Lactobacillus reuteri DSM 20016 5188188 YP_001272136.1 CDS Lreu_1556 NC_009513.1 1614788 1615333 R PFAM: Methyltransferase type 11; type 11 methyltransferase complement(1614788..1615333) Lactobacillus reuteri DSM 20016 5188462 YP_001272137.1 CDS Lreu_1557 NC_009513.1 1615351 1616019 R PFAM: TrkA-N domain protein; TrkA-C domain protein; TrkA domain-containing protein complement(1615351..1616019) Lactobacillus reuteri DSM 20016 5189303 YP_001272138.1 CDS Lreu_1558 NC_009513.1 1616012 1617355 R PFAM: cation transporter; H(+)-transporting two-sector ATPase complement(1616012..1617355) Lactobacillus reuteri DSM 20016 5189885 YP_001272139.1 CDS Lreu_1559 NC_009513.1 1617510 1619282 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 1617510..1619282 Lactobacillus reuteri DSM 20016 5189356 YP_001272140.1 CDS Lreu_1560 NC_009513.1 1619360 1620121 D PFAM: nitroreductase; nitroreductase 1619360..1620121 Lactobacillus reuteri DSM 20016 5189093 YP_001272141.1 CDS Lreu_1561 NC_009513.1 1620118 1621257 R PFAM: glycoside hydrolase, family 8; glycoside hydrolase complement(1620118..1621257) Lactobacillus reuteri DSM 20016 5188317 YP_001272142.1 CDS Lreu_1562 NC_009513.1 1621272 1622579 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(1621272..1622579) Lactobacillus reuteri DSM 20016 5188294 YP_001272143.1 CDS Lreu_1563 NC_009513.1 1622722 1623585 R hypothetical protein complement(1622722..1623585) Lactobacillus reuteri DSM 20016 5190057 YP_001272144.1 CDS Lreu_1564 NC_009513.1 1624758 1625462 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU complement(1624758..1625462) Lactobacillus reuteri DSM 20016 5188516 YP_001272145.1 CDS Lreu_1565 NC_009513.1 1625473 1626228 R TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(1625473..1626228) Lactobacillus reuteri DSM 20016 5190112 YP_001272146.1 CDS Lreu_1566 NC_009513.1 1626239 1627120 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease complement(1626239..1627120) Lactobacillus reuteri DSM 20016 5188411 YP_001272147.1 CDS Lreu_1567 NC_009513.1 1627120 1628019 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease complement(1627120..1628019) Lactobacillus reuteri DSM 20016 5188293 YP_001272148.1 CDS Lreu_1568 NC_009513.1 1628024 1628896 R TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; phosphate binding protein complement(1628024..1628896) Lactobacillus reuteri DSM 20016 5189295 YP_001272149.1 CDS Lreu_1569 NC_009513.1 1629022 1629732 D PFAM: transcriptional regulator domain protein; winged helix family two component response transcriptional regulator 1629022..1629732 Lactobacillus reuteri DSM 20016 5188401 YP_001272150.1 CDS Lreu_1571 NC_009513.1 1630646 1630957 D hypothetical protein 1630646..1630957 Lactobacillus reuteri DSM 20016 5188591 YP_001272151.1 CDS Lreu_1572 NC_009513.1 1630981 1631193 R hypothetical protein complement(1630981..1631193) Lactobacillus reuteri DSM 20016 5189192 YP_001272152.1 CDS Lreu_1573 NC_009513.1 1631357 1632370 R hypothetical protein complement(1631357..1632370) Lactobacillus reuteri DSM 20016 5189599 YP_001272153.1 CDS Lreu_1574 NC_009513.1 1632486 1633016 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1632486..1633016 Lactobacillus reuteri DSM 20016 5188301 YP_001272154.1 CDS Lreu_1575 NC_009513.1 1633201 1633788 D PFAM: mannose-6-phosphate isomerase, type I; mannose-6-phosphate isomerase 1633201..1633788 Lactobacillus reuteri DSM 20016 5189347 YP_001272155.1 CDS Lreu_1576 NC_009513.1 1633944 1634123 D hypothetical protein 1633944..1634123 Lactobacillus reuteri DSM 20016 5188178 YP_001272156.1 CDS Lreu_1577 NC_009513.1 1634120 1635013 R PFAM: regulatory protein, LysR; LysR family transcriptional regulator complement(1634120..1635013) Lactobacillus reuteri DSM 20016 5188271 YP_001272157.1 CDS Lreu_1578 NC_009513.1 1635142 1636248 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 1635142..1636248 Lactobacillus reuteri DSM 20016 5188655 YP_001272158.1 CDS Lreu_1579 NC_009513.1 1636334 1636654 D SMART: low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1636334..1636654 Lactobacillus reuteri DSM 20016 5188209 YP_001272159.1 CDS Lreu_1580 NC_009513.1 1636778 1637821 R hypothetical protein complement(1636778..1637821) Lactobacillus reuteri DSM 20016 5189287 YP_001272160.1 CDS Lreu_1581 NC_009513.1 1638013 1638570 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1638013..1638570) Lactobacillus reuteri DSM 20016 5188460 YP_001272161.1 CDS Lreu_1582 NC_009513.1 1638830 1639939 R membrane protein toxin regulator-like protein complement(1638830..1639939) Lactobacillus reuteri DSM 20016 5189835 YP_001272162.1 CDS Lreu_1584 NC_009513.1 1640654 1641289 D PFAM: Integrase, catalytic region; integrase catalytic subunit 1640654..1641289 Lactobacillus reuteri DSM 20016 5188916 YP_001272163.1 CDS Lreu_1585 NC_009513.1 1641813 1642676 R PFAM: NLPA lipoprotein; NLPA lipoprotein complement(1641813..1642676) Lactobacillus reuteri DSM 20016 5189039 YP_001272164.1 CDS Lreu_1586 NC_009513.1 1642792 1643268 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(1642792..1643268) Lactobacillus reuteri DSM 20016 5188910 YP_001272165.1 CDS Lreu_1587 NC_009513.1 1643656 1644342 R PFAM: peptidase M10A and M12B, matrixin and adamalysin; peptidase M10A and M12B, matrixin and adamalysin complement(1643656..1644342) Lactobacillus reuteri DSM 20016 5188426 YP_001272166.1 CDS Lreu_1588 NC_009513.1 1644366 1644980 R hypothetical protein complement(1644366..1644980) Lactobacillus reuteri DSM 20016 5190116 YP_001272167.1 CDS Lreu_1589 NC_009513.1 1645286 1646341 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(1645286..1646341) Lactobacillus reuteri DSM 20016 5189007 YP_001272168.1 CDS Lreu_1590 NC_009513.1 1646660 1647550 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 1646660..1647550 Lactobacillus reuteri DSM 20016 5188158 YP_001272169.1 CDS Lreu_1592 NC_009513.1 1648108 1649502 D PFAM: Integrase, catalytic region; integrase catalytic subunit 1648108..1649502 Lactobacillus reuteri DSM 20016 5188963 YP_001272170.1 CDS Lreu_1593 NC_009513.1 1649717 1650964 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 1649717..1650964 Lactobacillus reuteri DSM 20016 5189068 YP_001272171.1 CDS Lreu_1594 NC_009513.1 1651032 1651274 R PFAM: cytochrome b5; cytochrome b5 complement(1651032..1651274) Lactobacillus reuteri DSM 20016 5189329 YP_001272172.1 CDS Lreu_1595 NC_009513.1 1651366 1651836 R transposase complement(1651366..1651836) Lactobacillus reuteri DSM 20016 5188583 YP_001272173.1 CDS Lreu_1596 NC_009513.1 1652017 1652304 D hypothetical protein 1652017..1652304 Lactobacillus reuteri DSM 20016 5189272 YP_001272174.1 CDS Lreu_1597 NC_009513.1 1652484 1653071 R hypothetical protein complement(1652484..1653071) Lactobacillus reuteri DSM 20016 5188288 YP_001272175.1 CDS Lreu_1598 NC_009513.1 1653138 1653254 R hypothetical protein complement(1653138..1653254) Lactobacillus reuteri DSM 20016 5190160 YP_001272176.1 CDS Lreu_1599 NC_009513.1 1653567 1654736 D TIGRFAM: hydroxymethylpyrimidine transporter CytX; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; hydroxymethylpyrimidine transporter CytX 1653567..1654736 Lactobacillus reuteri DSM 20016 5188573 YP_001272177.1 CDS Lreu_1600 NC_009513.1 1654810 1655331 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1654810..1655331) Lactobacillus reuteri DSM 20016 5188761 YP_001272178.1 CDS Lreu_1601 NC_009513.1 1655547 1656011 R hypothetical protein complement(1655547..1656011) Lactobacillus reuteri DSM 20016 5188600 YP_001272179.1 CDS Lreu_1602 NC_009513.1 1656024 1657091 R PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(1656024..1657091) Lactobacillus reuteri DSM 20016 5188262 YP_001272180.1 CDS Lreu_1603 NC_009513.1 1657184 1658344 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1657184..1658344) Lactobacillus reuteri DSM 20016 5189112 YP_001272181.1 CDS Lreu_1604 NC_009513.1 1658408 1658899 D PFAM: conserved hypothetical protein 1440; hypothetical protein 1658408..1658899 Lactobacillus reuteri DSM 20016 5190145 YP_001272182.1 CDS Lreu_1605 NC_009513.1 1659091 1659963 R PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(1659091..1659963) Lactobacillus reuteri DSM 20016 5188489 YP_001272183.1 CDS Lreu_1606 NC_009513.1 1660034 1661272 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1660034..1661272) Lactobacillus reuteri DSM 20016 5189117 YP_001272184.1 CDS Lreu_1607 NC_009513.1 1661665 1662873 R PFAM: phage integrase family protein; phage integrase family protein complement(1661665..1662873) Lactobacillus reuteri DSM 20016 5189321 YP_001272185.1 CDS Lreu_1608 NC_009513.1 1662860 1663075 R hypothetical protein complement(1662860..1663075) Lactobacillus reuteri DSM 20016 5188604 YP_001272186.1 CDS Lreu_1609 NC_009513.1 1663077 1663325 R hypothetical protein complement(1663077..1663325) Lactobacillus reuteri DSM 20016 5189285 YP_001272187.1 CDS Lreu_1610 NC_009513.1 1663343 1665409 R hypothetical protein complement(1663343..1665409) Lactobacillus reuteri DSM 20016 5189316 YP_001272188.1 CDS Lreu_1611 NC_009513.1 1665376 1666281 R hypothetical protein complement(1665376..1666281) Lactobacillus reuteri DSM 20016 5188490 YP_001272189.1 CDS Lreu_1612 NC_009513.1 1666766 1667248 R IS30 family transposase complement(1666766..1667248) Lactobacillus reuteri DSM 20016 5188482 YP_001272190.1 CDS Lreu_1613 NC_009513.1 1667440 1669209 R PFAM: glycoside hydrolase, family 13 domain protein Ig domain protein region domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; alpha amylase complement(1667440..1669209) Lactobacillus reuteri DSM 20016 5188488 YP_001272191.1 CDS Lreu_1614 NC_009513.1 1669206 1670552 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1669206..1670552) Lactobacillus reuteri DSM 20016 5189342 YP_001272192.1 CDS Lreu_1615 NC_009513.1 1670820 1671113 R hypothetical protein complement(1670820..1671113) Lactobacillus reuteri DSM 20016 5188397 YP_001272193.1 CDS Lreu_1616 NC_009513.1 1671208 1671678 D hypothetical protein 1671208..1671678 Lactobacillus reuteri DSM 20016 5188291 YP_001272194.1 CDS guaA NC_009513.1 1672813 1674366 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1672813..1674366) Lactobacillus reuteri DSM 20016 5189063 YP_001272195.1 CDS Lreu_1618 NC_009513.1 1674881 1676071 D ATPase AAA 1674881..1676071 Lactobacillus reuteri DSM 20016 5188147 YP_001272196.1 CDS Lreu_1619 NC_009513.1 1676068 1676991 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(1676068..1676991) Lactobacillus reuteri DSM 20016 5188378 YP_001272197.1 CDS Lreu_1620 NC_009513.1 1677182 1679278 R PFAM: sulfatase; sulfatase complement(1677182..1679278) Lactobacillus reuteri DSM 20016 5189180 YP_001272198.1 CDS Lreu_1621 NC_009513.1 1679489 1680358 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1679489..1680358 Lactobacillus reuteri DSM 20016 5188882 YP_001272199.1 CDS Lreu_1622 NC_009513.1 1680398 1680634 R hypothetical protein complement(1680398..1680634) Lactobacillus reuteri DSM 20016 5188547 YP_001272200.1 CDS Lreu_1623 NC_009513.1 1680806 1681981 R TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; IS605 family transposase OrfB complement(1680806..1681981) Lactobacillus reuteri DSM 20016 5189212 YP_001272201.1 CDS Lreu_1624 NC_009513.1 1681981 1682325 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(1681981..1682325) Lactobacillus reuteri DSM 20016 5189126 YP_001272202.1 CDS Lreu_1625 NC_009513.1 1682533 1684839 R superfamily I DNA/RNA helicase-like protein complement(1682533..1684839) Lactobacillus reuteri DSM 20016 5188308 YP_001272203.1 CDS Lreu_1626 NC_009513.1 1685059 1685709 D PFAM: SNARE associated Golgi protein; hypothetical protein 1685059..1685709 Lactobacillus reuteri DSM 20016 5188601 YP_001272204.1 CDS Lreu_1627 NC_009513.1 1685783 1686436 D PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 1685783..1686436 Lactobacillus reuteri DSM 20016 5188708 YP_001272205.1 CDS Lreu_1628 NC_009513.1 1686466 1687743 D PFAM: GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 1686466..1687743 Lactobacillus reuteri DSM 20016 5188309 YP_001272206.1 CDS Lreu_1629 NC_009513.1 1687790 1688041 R PFAM: Transglycosylase-associated protein; transglycosylase-associated protein complement(1687790..1688041) Lactobacillus reuteri DSM 20016 5189225 YP_001272207.1 CDS Lreu_1630 NC_009513.1 1688044 1688241 R PFAM: CsbD family protein; CsbD family protein complement(1688044..1688241) Lactobacillus reuteri DSM 20016 5189325 YP_001272208.1 CDS Lreu_1631 NC_009513.1 1688460 1689452 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(1688460..1689452) Lactobacillus reuteri DSM 20016 5188210 YP_001272209.1 CDS Lreu_1632 NC_009513.1 1689584 1692451 R hypothetical protein complement(1689584..1692451) Lactobacillus reuteri DSM 20016 5189346 YP_001272210.1 CDS Lreu_1633 NC_009513.1 1692488 1693024 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(1692488..1693024) Lactobacillus reuteri DSM 20016 5189331 YP_001272211.1 CDS Lreu_1634 NC_009513.1 1693333 1693584 D PFAM: PspC domain protein; phage shock protein C 1693333..1693584 Lactobacillus reuteri DSM 20016 5188206 YP_001272212.1 CDS Lreu_1635 NC_009513.1 1693639 1694478 R hypothetical protein complement(1693639..1694478) Lactobacillus reuteri DSM 20016 5188306 YP_001272213.1 CDS Lreu_1636 NC_009513.1 1694497 1694976 R hypothetical protein complement(1694497..1694976) Lactobacillus reuteri DSM 20016 5188627 YP_001272214.1 CDS Lreu_1637 NC_009513.1 1695036 1695473 R PFAM: ferric-uptake regulator; ferric uptake regulator family protein complement(1695036..1695473) Lactobacillus reuteri DSM 20016 5189142 YP_001272215.1 CDS Lreu_1638 NC_009513.1 1695513 1696085 R PFAM: guanylate kinase; SMART: AAA ATPase; guanylate kinase/L-type calcium channel region; guanylate kinase complement(1695513..1696085) Lactobacillus reuteri DSM 20016 5188300 YP_001272216.1 CDS Lreu_1639 NC_009513.1 1696092 1696502 R PFAM: NUDIX hydrolase; NUDIX hydrolase complement(1696092..1696502) Lactobacillus reuteri DSM 20016 5188243 YP_001272217.1 CDS Lreu_1640 NC_009513.1 1696631 1698022 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 1696631..1698022 Lactobacillus reuteri DSM 20016 5188233 YP_001272218.1 CDS Lreu_1641 NC_009513.1 1698198 1699502 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 1698198..1699502 Lactobacillus reuteri DSM 20016 5188445 YP_001272219.1 CDS Lreu_1642 NC_009513.1 1699583 1700875 R hypothetical protein complement(1699583..1700875) Lactobacillus reuteri DSM 20016 5188519 YP_001272220.1 CDS Lreu_1643 NC_009513.1 1700993 1702066 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1700993..1702066) Lactobacillus reuteri DSM 20016 5188279 YP_001272221.1 CDS Lreu_1644 NC_009513.1 1702063 1702881 R PFAM: binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase complement(1702063..1702881) Lactobacillus reuteri DSM 20016 5188480 YP_001272222.1 CDS Lreu_1645 NC_009513.1 1702881 1703687 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1702881..1703687) Lactobacillus reuteri DSM 20016 5188557 YP_001272223.1 CDS Lreu_1646 NC_009513.1 1703687 1704778 R TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(1703687..1704778) Lactobacillus reuteri DSM 20016 5189271 YP_001272224.1 CDS Lreu_1647 NC_009513.1 1704918 1707320 D catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 1704918..1707320 Lactobacillus reuteri DSM 20016 5189206 YP_001272225.1 CDS Lreu_1648 NC_009513.1 1707421 1708332 D TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; proline-specific peptidase 1707421..1708332 Lactobacillus reuteri DSM 20016 5189107 YP_001272226.1 CDS Lreu_1649 NC_009513.1 1708568 1711231 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; P-type HAD superfamily ATPase 1708568..1711231 Lactobacillus reuteri DSM 20016 5189249 YP_001272227.1 CDS Lreu_1650 NC_009513.1 1711374 1711841 D PFAM: Ferritin, Dps family protein; Ferritin, Dps family protein 1711374..1711841 Lactobacillus reuteri DSM 20016 5188439 YP_001272228.1 CDS Lreu_1651 NC_009513.1 1711922 1713322 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1711922..1713322) Lactobacillus reuteri DSM 20016 5188200 YP_001272229.1 CDS Lreu_1652 NC_009513.1 1713463 1714110 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 1713463..1714110 Lactobacillus reuteri DSM 20016 5189348 YP_001272230.1 CDS Lreu_1653 NC_009513.1 1714342 1714566 R hypothetical protein complement(1714342..1714566) Lactobacillus reuteri DSM 20016 5189167 YP_001272231.1 CDS Lreu_1655 NC_009513.1 1715079 1715435 D hypothetical protein 1715079..1715435 Lactobacillus reuteri DSM 20016 5189124 YP_001272232.1 CDS Lreu_1656 NC_009513.1 1715612 1716283 D PFAM: Integrase, catalytic region; integrase catalytic subunit 1715612..1716283 Lactobacillus reuteri DSM 20016 5188606 YP_001272233.1 CDS Lreu_1657 NC_009513.1 1716553 1717551 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1716553..1717551) Lactobacillus reuteri DSM 20016 5189025 YP_001272234.1 CDS Lreu_1658 NC_009513.1 1717716 1718678 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 1717716..1718678 Lactobacillus reuteri DSM 20016 5188690 YP_001272235.1 CDS Lreu_1659 NC_009513.1 1718970 1719725 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1718970..1719725 Lactobacillus reuteri DSM 20016 5188483 YP_001272236.1 CDS Lreu_1660 NC_009513.1 1719778 1720563 R PFAM: protein of unknown function DUF81; hypothetical protein complement(1719778..1720563) Lactobacillus reuteri DSM 20016 5189200 YP_001272237.1 CDS Lreu_1661 NC_009513.1 1720830 1721390 D hypothetical protein 1720830..1721390 Lactobacillus reuteri DSM 20016 5188620 YP_001272238.1 CDS Lreu_1662 NC_009513.1 1721395 1722777 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 1721395..1722777 Lactobacillus reuteri DSM 20016 5189129 YP_001272239.1 CDS Lreu_1663 NC_009513.1 1722767 1723420 D PFAM: cobalt transport protein; cobalt transport protein 1722767..1723420 Lactobacillus reuteri DSM 20016 5189052 YP_001272240.1 CDS Lreu_1664 NC_009513.1 1723462 1723803 D hypothetical protein 1723462..1723803 Lactobacillus reuteri DSM 20016 5189185 YP_001272241.1 CDS Lreu_1665 NC_009513.1 1723893 1725854 D PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 1723893..1725854 Lactobacillus reuteri DSM 20016 5189020 YP_001272242.1 CDS Lreu_1666 NC_009513.1 1725902 1726258 R PFAM: protein of unknown function DUF1304; hypothetical protein complement(1725902..1726258) Lactobacillus reuteri DSM 20016 5189199 YP_001272243.1 CDS Lreu_1667 NC_009513.1 1726272 1727123 R alpha/beta fold family hydrolase-like protein complement(1726272..1727123) Lactobacillus reuteri DSM 20016 5189019 YP_001272244.1 CDS Lreu_1668 NC_009513.1 1727373 1727786 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1727373..1727786 Lactobacillus reuteri DSM 20016 5188793 YP_001272245.1 CDS Lreu_1669 NC_009513.1 1727797 1728654 D hypothetical protein 1727797..1728654 Lactobacillus reuteri DSM 20016 5189187 YP_001272246.1 CDS Lreu_1670 NC_009513.1 1728709 1729695 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(1728709..1729695) Lactobacillus reuteri DSM 20016 5188760 YP_001272247.1 CDS Lreu_1671 NC_009513.1 1729741 1731153 R PFAM: PTS system Galactitol-specific IIC component; PTS system galactitol-specific transporter subunit IIC complement(1729741..1731153) Lactobacillus reuteri DSM 20016 5188961 YP_001272248.1 CDS Lreu_1672 NC_009513.1 1731307 1732476 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 1731307..1732476 Lactobacillus reuteri DSM 20016 5188831 YP_001272249.1 CDS Lreu_1673 NC_009513.1 1732649 1733530 D PFAM: helix-turn-helix domain protein; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 1732649..1733530 Lactobacillus reuteri DSM 20016 5188355 YP_001272250.1 CDS Lreu_1674 NC_009513.1 1733541 1734251 D hypothetical protein 1733541..1734251 Lactobacillus reuteri DSM 20016 5189997 YP_001272251.1 CDS Lreu_1675 NC_009513.1 1734485 1734943 R hypothetical protein complement(1734485..1734943) Lactobacillus reuteri DSM 20016 5189832 YP_001272252.1 CDS Lreu_1676 NC_009513.1 1734940 1735347 R hypothetical protein complement(1734940..1735347) Lactobacillus reuteri DSM 20016 5189022 YP_001272253.1 CDS Lreu_1677 NC_009513.1 1735477 1736490 R TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase complement(1735477..1736490) Lactobacillus reuteri DSM 20016 5189988 YP_001272254.1 CDS Lreu_1678 NC_009513.1 1736691 1737158 D PFAM: UspA domain protein; UspA domain-containing protein 1736691..1737158 Lactobacillus reuteri DSM 20016 5188877 YP_001272255.1 CDS Lreu_1679 NC_009513.1 1737170 1739098 D TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; translation elongation factor 2 (EF-2/EF-G) 1737170..1739098 Lactobacillus reuteri DSM 20016 5189790 YP_001272256.1 CDS Lreu_1680 NC_009513.1 1739165 1740067 R PFAM: ROK family protein; transcriptional regulator complement(1739165..1740067) Lactobacillus reuteri DSM 20016 5188940 YP_001272257.1 CDS Lreu_1681 NC_009513.1 1740093 1741445 R PFAM: branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein complement(1740093..1741445) Lactobacillus reuteri DSM 20016 5188724 YP_001272258.1 CDS Lreu_1682 NC_009513.1 1741530 1741979 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(1741530..1741979) Lactobacillus reuteri DSM 20016 5189921 YP_001272259.1 CDS Lreu_1683 NC_009513.1 1742054 1743304 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; IS605 family transposase OrfB 1742054..1743304 Lactobacillus reuteri DSM 20016 5188765 YP_001272260.1 CDS Lreu_1684 NC_009513.1 1743710 1744456 R alpha/beta fold family hydrolase-like protein complement(1743710..1744456) Lactobacillus reuteri DSM 20016 5188763 YP_001272261.1 CDS Lreu_1685 NC_009513.1 1744491 1745846 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1744491..1745846) Lactobacillus reuteri DSM 20016 5188982 YP_001272262.1 CDS Lreu_1686 NC_009513.1 1746023 1748434 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; phosphoketolase complement(1746023..1748434) Lactobacillus reuteri DSM 20016 5188823 YP_001272263.1 CDS Lreu_1687 NC_009513.1 1748704 1749435 R PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator complement(1748704..1749435) Lactobacillus reuteri DSM 20016 5188900 YP_001272264.1 CDS Lreu_1688 NC_009513.1 1749567 1750073 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybaK/ebsC protein 1749567..1750073 Lactobacillus reuteri DSM 20016 5188902 YP_001272265.1 CDS Lreu_1689 NC_009513.1 1750161 1751597 D PFAM: peptidase U34, dipeptidase; peptidase U34, dipeptidase 1750161..1751597 Lactobacillus reuteri DSM 20016 5188922 YP_001272266.1 CDS Lreu_1690 NC_009513.1 1751656 1753479 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(1751656..1753479) Lactobacillus reuteri DSM 20016 5188744 YP_001272267.1 CDS Lreu_1691 NC_009513.1 1753472 1755214 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(1753472..1755214) Lactobacillus reuteri DSM 20016 5189006 YP_001272268.1 CDS Lreu_1692 NC_009513.1 1755384 1756388 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1755384..1756388 Lactobacillus reuteri DSM 20016 5189337 YP_001272269.1 CDS Lreu_1693 NC_009513.1 1756450 1756983 R hypothetical protein complement(1756450..1756983) Lactobacillus reuteri DSM 20016 5189960 YP_001272270.1 CDS Lreu_1694 NC_009513.1 1756985 1757365 R hypothetical protein complement(1756985..1757365) Lactobacillus reuteri DSM 20016 5188901 YP_001272271.1 CDS Lreu_1695 NC_009513.1 1757654 1758706 R PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(1757654..1758706) Lactobacillus reuteri DSM 20016 5189004 YP_001272272.1 CDS Lreu_1696 NC_009513.1 1758708 1759418 R hypothetical protein complement(1758708..1759418) Lactobacillus reuteri DSM 20016 5189967 YP_001272273.1 CDS Lreu_1697 NC_009513.1 1759455 1760045 R PFAM: Phosphoglycerate mutase; alpha-ribazole phosphatase complement(1759455..1760045) Lactobacillus reuteri DSM 20016 5189954 YP_001272274.1 CDS Lreu_1698 NC_009513.1 1760042 1760803 R PFAM: cobalamin-5-phosphate synthase CobS; cobalamin-5'-phosphate synthase complement(1760042..1760803) Lactobacillus reuteri DSM 20016 5189961 YP_001272275.1 CDS Lreu_1699 NC_009513.1 1760812 1761402 R PFAM: cobalbumin biosynthesis protein; adenosylcobinamide kinase complement(1760812..1761402) Lactobacillus reuteri DSM 20016 5189719 YP_001272276.1 CDS Lreu_1700 NC_009513.1 1761465 1762760 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1761465..1762760) Lactobacillus reuteri DSM 20016 5188957 YP_001272277.1 CDS Lreu_1701 NC_009513.1 1762780 1763751 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1762780..1763751) Lactobacillus reuteri DSM 20016 5190001 YP_001272278.1 CDS hemC NC_009513.1 1763757 1764674 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1763757..1764674) Lactobacillus reuteri DSM 20016 5189323 YP_001272279.1 CDS hemA NC_009513.1 1764664 1765929 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1764664..1765929) Lactobacillus reuteri DSM 20016 5189985 YP_001272280.1 CDS Lreu_1704 NC_009513.1 1765931 1766389 R siroheme synthase complement(1765931..1766389) Lactobacillus reuteri DSM 20016 5189718 YP_001272281.1 CDS Lreu_1705 NC_009513.1 1766404 1767909 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(1766404..1767909) Lactobacillus reuteri DSM 20016 5189994 YP_001272282.1 CDS Lreu_1706 NC_009513.1 1767984 1768787 R TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; cobalt ABC transporter ATPase complement(1767984..1768787) Lactobacillus reuteri DSM 20016 5188937 YP_001272283.1 CDS Lreu_1707 NC_009513.1 1768799 1769476 R TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; cobalt ABC transporter inner membrane protein CbiQ complement(1768799..1769476) Lactobacillus reuteri DSM 20016 5188873 YP_001272284.1 CDS Lreu_1708 NC_009513.1 1769497 1769808 R PFAM: Cobalt transport protein CbiN; cobalt transport protein CbiN complement(1769497..1769808) Lactobacillus reuteri DSM 20016 5189973 YP_001272285.1 CDS Lreu_1709 NC_009513.1 1769805 1770551 R TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin biosynthesis protein CbiM complement(1769805..1770551) Lactobacillus reuteri DSM 20016 5189971 YP_001272286.1 CDS Lreu_1710 NC_009513.1 1770535 1771248 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(1770535..1771248) Lactobacillus reuteri DSM 20016 5188875 YP_001272287.1 CDS Lreu_1711 NC_009513.1 1771250 1772029 R PFAM: anaerobic cobalt chelatase; anaerobic cobaltochelatase complement(1771250..1772029) Lactobacillus reuteri DSM 20016 5189335 YP_001272288.1 CDS Lreu_1712 NC_009513.1 1772022 1773416 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen-III C-methyltransferase complement(1772022..1773416) Lactobacillus reuteri DSM 20016 5189372 YP_001272289.1 CDS Lreu_1713 NC_009513.1 1773406 1774164 R TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; precorrin-6A reductase complement(1773406..1774164) Lactobacillus reuteri DSM 20016 5189999 YP_001272290.1 CDS Lreu_1714 NC_009513.1 1774161 1774886 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-3 methyltransferase complement(1774161..1774886) Lactobacillus reuteri DSM 20016 5190034 YP_001272291.1 CDS Lreu_1715 NC_009513.1 1774899 1775954 R PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis protein CbiG complement(1774899..1775954) Lactobacillus reuteri DSM 20016 5188429 YP_001272292.1 CDS Lreu_1716 NC_009513.1 1775957 1776718 R TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase complement(1775957..1776718) Lactobacillus reuteri DSM 20016 5189682 YP_001272293.1 CDS Lreu_1717 NC_009513.1 1776735 1777289 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(1776735..1777289) Lactobacillus reuteri DSM 20016 5189846 YP_001272294.1 CDS Lreu_1718 NC_009513.1 1777282 1777884 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(1777282..1777884) Lactobacillus reuteri DSM 20016 5189989 YP_001272295.1 CDS cbiD NC_009513.1 1777881 1779032 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(1777881..1779032) Lactobacillus reuteri DSM 20016 5190025 YP_001272296.1 CDS cbiC NC_009513.1 1779013 1779696 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase complement(1779013..1779696) Lactobacillus reuteri DSM 20016 5189962 YP_001272297.1 CDS Lreu_1721 NC_009513.1 1779702 1780661 R TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; adenosylcobinamide-phosphate synthase complement(1779702..1780661) Lactobacillus reuteri DSM 20016 5188933 YP_001272298.1 CDS Lreu_1722 NC_009513.1 1780658 1782022 R TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase complement(1780658..1782022) Lactobacillus reuteri DSM 20016 5188305 YP_001272299.1 CDS Lreu_1723 NC_009513.1 1782022 1783110 R TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase, class I and II; L-threonine O-3-phosphate decarboxylase complement(1782022..1783110) Lactobacillus reuteri DSM 20016 5189024 YP_001272300.1 CDS Lreu_1724 NC_009513.1 1783455 1784423 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(1783455..1784423) Lactobacillus reuteri DSM 20016 5188930 YP_001272301.1 CDS Lreu_1725 NC_009513.1 1784552 1785118 D TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP:cob(I)alamin adenosyltransferase 1784552..1785118 Lactobacillus reuteri DSM 20016 5188711 YP_001272302.1 CDS Lreu_1726 NC_009513.1 1785166 1786008 R PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1785166..1786008) Lactobacillus reuteri DSM 20016 5190147 YP_001272303.1 CDS Lreu_1727 NC_009513.1 1786030 1786479 R PFAM: flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase complement(1786030..1786479) Lactobacillus reuteri DSM 20016 5188729 YP_001272304.1 CDS Lreu_1728 NC_009513.1 1786586 1787014 D TIGRFAM: ethanolamine utilization protein, EutP; ethanolamine utilization protein, EutP 1786586..1787014 Lactobacillus reuteri DSM 20016 5188418 YP_001272305.1 CDS Lreu_1729 NC_009513.1 1787007 1787564 R hypothetical protein complement(1787007..1787564) Lactobacillus reuteri DSM 20016 5188624 YP_001272306.1 CDS Lreu_1730 NC_009513.1 1787561 1788205 R PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(1787561..1788205) Lactobacillus reuteri DSM 20016 5188379 YP_001272307.1 CDS Lreu_1731 NC_009513.1 1788302 1789096 R protein tyrosine phosphatase complement(1788302..1789096) Lactobacillus reuteri DSM 20016 5188632 YP_001272308.1 CDS Lreu_1732 NC_009513.1 1789169 1789516 R PFAM: microcompartments protein; microcompartments protein complement(1789169..1789516) Lactobacillus reuteri DSM 20016 5188329 YP_001272309.1 CDS Lreu_1733 NC_009513.1 1789532 1790716 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase complement(1789532..1790716) Lactobacillus reuteri DSM 20016 5188168 YP_001272310.1 CDS Lreu_1734 NC_009513.1 1790740 1791861 R PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1790740..1791861) Lactobacillus reuteri DSM 20016 5188472 YP_001272311.1 CDS Lreu_1735 NC_009513.1 1791879 1793312 R PFAM: aldehyde dehydrogenase; 50S ribosomal protein L29 complement(1791879..1793312) Lactobacillus reuteri DSM 20016 5188648 YP_001272312.1 CDS Lreu_1736 NC_009513.1 1793315 1793788 R PFAM: protein of unknown function DUF336; ATP:cob(I)alamin adenosyltransferase complement(1793315..1793788) Lactobacillus reuteri DSM 20016 5188499 YP_001272313.1 CDS Lreu_1737 NC_009513.1 1793791 1794378 R TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase complement(1793791..1794378) Lactobacillus reuteri DSM 20016 5189033 YP_001272314.1 CDS Lreu_1738 NC_009513.1 1794399 1794671 R PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; ethanolamine utilization protein EutN/carboxysome structural protein Ccml complement(1794399..1794671) Lactobacillus reuteri DSM 20016 5188245 YP_001272315.1 CDS Lreu_1739 NC_009513.1 1794659 1795162 R hypothetical protein complement(1794659..1795162) Lactobacillus reuteri DSM 20016 5189446 YP_001272316.1 CDS Lreu_1740 NC_009513.1 1795194 1795838 R PFAM: Propanediol utilization protein; propanediol utilization protein complement(1795194..1795838) Lactobacillus reuteri DSM 20016 5188149 YP_001272317.1 CDS Lreu_1741 NC_009513.1 1795867 1796157 R PFAM: microcompartments protein; microcompartments protein complement(1795867..1796157) Lactobacillus reuteri DSM 20016 5188637 YP_001272318.1 CDS Lreu_1742 NC_009513.1 1796170 1796739 R PFAM: microcompartments protein; microcompartments protein complement(1796170..1796739) Lactobacillus reuteri DSM 20016 5188564 YP_001272319.1 CDS Lreu_1743 NC_009513.1 1796747 1797106 R hypothetical protein complement(1796747..1797106) Lactobacillus reuteri DSM 20016 5188661 YP_001272320.1 CDS Lreu_1744 NC_009513.1 1797093 1798943 R PFAM: Diol/glycerol dehydratase reactivating factor, large subunit; diol/glycerol dehydratase reactivating factor, large subunit complement(1797093..1798943) Lactobacillus reuteri DSM 20016 5189289 YP_001272321.1 CDS Lreu_1745 NC_009513.1 1798974 1799492 R PFAM: dehydratase, small subunit; dehydratase, small subunit complement(1798974..1799492) Lactobacillus reuteri DSM 20016 5189054 YP_001272322.1 CDS Lreu_1746 NC_009513.1 1799502 1800212 R PFAM: dehydratase, medium subunit; dehydratase, medium subunit complement(1799502..1800212) Lactobacillus reuteri DSM 20016 5188296 YP_001272323.1 CDS Lreu_1747 NC_009513.1 1800230 1801906 R PFAM: dehydratase, large subunit; glycerol dehydratase complement(1800230..1801906) Lactobacillus reuteri DSM 20016 5189036 YP_001272324.1 CDS Lreu_1748 NC_009513.1 1801931 1802647 R PFAM: microcompartments protein; microcompartments protein complement(1801931..1802647) Lactobacillus reuteri DSM 20016 5188715 YP_001272325.1 CDS Lreu_1749 NC_009513.1 1802745 1803026 R PFAM: microcompartments protein; microcompartments protein complement(1802745..1803026) Lactobacillus reuteri DSM 20016 5188640 YP_001272326.1 CDS Lreu_1750 NC_009513.1 1803280 1804359 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 1803280..1804359 Lactobacillus reuteri DSM 20016 5188667 YP_001272327.1 CDS Lreu_1751 NC_009513.1 1804400 1805233 R TIGRFAM: ethanolamine utilization protein EutJ family protein; ethanolamine utilization protein EutJ family protein complement(1804400..1805233) Lactobacillus reuteri DSM 20016 5188613 YP_001272328.1 CDS Lreu_1752 NC_009513.1 1805318 1806025 R PFAM: major intrinsic protein; major intrinsic protein complement(1805318..1806025) Lactobacillus reuteri DSM 20016 5189319 YP_001272329.1 CDS Lreu_1753 NC_009513.1 1806195 1807139 R hypothetical protein complement(1806195..1807139) Lactobacillus reuteri DSM 20016 5188339 YP_001272330.1 CDS Lreu_1754 NC_009513.1 1807199 1808038 D PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 1807199..1808038 Lactobacillus reuteri DSM 20016 5188630 YP_001272331.1 CDS Lreu_1755 NC_009513.1 1808041 1809159 D PFAM: protein of unknown function UPF0118; hypothetical protein 1808041..1809159 Lactobacillus reuteri DSM 20016 5189125 YP_001272332.1 CDS Lreu_1756 NC_009513.1 1809309 1810034 R PFAM: B3/4 domain protein; B3/4 domain-containing protein complement(1809309..1810034) Lactobacillus reuteri DSM 20016 5188477 YP_001272333.1 CDS Lreu_1757 NC_009513.1 1810058 1810510 R PFAM: regulatory protein, MarR; MarR family transcriptional regulator complement(1810058..1810510) Lactobacillus reuteri DSM 20016 5189763 YP_001272334.1 CDS Lreu_1758 NC_009513.1 1810578 1811105 R PFAM: Domain of unknown function DUF1836; hypothetical protein complement(1810578..1811105) Lactobacillus reuteri DSM 20016 5188748 YP_001272335.1 CDS Lreu_1759 NC_009513.1 1811122 1811646 R hypothetical protein complement(1811122..1811646) Lactobacillus reuteri DSM 20016 5188631 YP_001272336.1 CDS Lreu_1760 NC_009513.1 1811664 1812527 R multidrug ABC transporter ATPase-like protein complement(1811664..1812527) Lactobacillus reuteri DSM 20016 5189095 YP_001272337.1 CDS Lreu_1761 NC_009513.1 1812685 1814028 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; hypothetical protein 1812685..1814028 Lactobacillus reuteri DSM 20016 5188311 YP_001272338.1 CDS Lreu_1762 NC_009513.1 1814140 1814607 D PFAM: NrdI family protein; NrdI family protein 1814140..1814607 Lactobacillus reuteri DSM 20016 5188673 YP_001272339.1 CDS Lreu_1763 NC_009513.1 1814657 1815082 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(1814657..1815082) Lactobacillus reuteri DSM 20016 5189216 YP_001272340.1 CDS Lreu_1764 NC_009513.1 1815321 1816427 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1815321..1816427 Lactobacillus reuteri DSM 20016 5189229 YP_001272341.1 CDS Lreu_1765 NC_009513.1 1816710 1818191 D TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1816710..1818191 Lactobacillus reuteri DSM 20016 5188461 YP_001272342.1 CDS Lreu_1766 NC_009513.1 1818335 1819771 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1818335..1819771 Lactobacillus reuteri DSM 20016 5188221 YP_001272343.1 CDS Lreu_1767 NC_009513.1 1819882 1820148 D hypothetical protein 1819882..1820148 Lactobacillus reuteri DSM 20016 5189892 YP_001272344.1 CDS Lreu_1768 NC_009513.1 1820271 1822223 D TIGRFAM: PTS system, glucose subfamily, IIA subunit; sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: sugar-specific permease, EIIA 1 domain; sugar (glycoside-Pentoside-hexuronide) transporter 1820271..1822223 Lactobacillus reuteri DSM 20016 5189224 YP_001272345.1 CDS Lreu_1769 NC_009513.1 1822453 1822917 R PFAM: UspA domain protein; UspA domain-containing protein complement(1822453..1822917) Lactobacillus reuteri DSM 20016 5189207 YP_001272346.1 CDS Lreu_1770 NC_009513.1 1823131 1823601 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 1823131..1823601 Lactobacillus reuteri DSM 20016 5189702 YP_001272347.1 CDS Lreu_1771 NC_009513.1 1823650 1824963 R PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1823650..1824963) Lactobacillus reuteri DSM 20016 5188359 YP_001272348.1 CDS Lreu_1772 NC_009513.1 1825213 1825839 D PFAM: SNARE associated Golgi protein; hypothetical protein 1825213..1825839 Lactobacillus reuteri DSM 20016 5189075 YP_001272349.1 CDS Lreu_1773 NC_009513.1 1825854 1826303 R IS30 family transposase complement(1825854..1826303) Lactobacillus reuteri DSM 20016 5188268 YP_001272350.1 CDS Lreu_1774 NC_009513.1 1826391 1826984 R IS30 family transposase complement(1826391..1826984) Lactobacillus reuteri DSM 20016 5189130 YP_001272351.1 CDS Lreu_1775 NC_009513.1 1827184 1828176 R PFAM: regulatory protein, LacI; LacI family transcriptional regulator complement(1827184..1828176) Lactobacillus reuteri DSM 20016 5189254 YP_001272352.1 CDS Lreu_1776 NC_009513.1 1828214 1829665 R catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase complement(1828214..1829665) Lactobacillus reuteri DSM 20016 5188417 YP_001272353.1 CDS Lreu_1777 NC_009513.1 1829692 1830870 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(1829692..1830870) Lactobacillus reuteri DSM 20016 5189339 YP_001272354.1 CDS Lreu_1778 NC_009513.1 1831065 1832033 D hypothetical protein 1831065..1832033 Lactobacillus reuteri DSM 20016 5189031 YP_001272355.1 CDS Lreu_1779 NC_009513.1 1832063 1832845 D protein tyrosine/serine phosphatase 1832063..1832845 Lactobacillus reuteri DSM 20016 5188320 YP_001272356.1 CDS Lreu_1780 NC_009513.1 1832882 1833388 D PFAM: PEBP family protein; PEBP family protein 1832882..1833388 Lactobacillus reuteri DSM 20016 5189148 YP_001272357.1 CDS Lreu_1781 NC_009513.1 1833402 1833626 D hypothetical protein 1833402..1833626 Lactobacillus reuteri DSM 20016 5188322 YP_001272358.1 CDS Lreu_1782 NC_009513.1 1833822 1834148 R hypothetical protein complement(1833822..1834148) Lactobacillus reuteri DSM 20016 5188702 YP_001272359.1 CDS Lreu_1783 NC_009513.1 1834172 1835293 R hypothetical protein complement(1834172..1835293) Lactobacillus reuteri DSM 20016 5188892 YP_001272360.1 CDS greA NC_009513.1 1835400 1835897 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1835400..1835897 Lactobacillus reuteri DSM 20016 5189273 YP_001272361.1 CDS Lreu_1785 NC_009513.1 1836149 1836901 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 1836149..1836901 Lactobacillus reuteri DSM 20016 5190000 YP_001272362.1 CDS Lreu_1786 NC_009513.1 1837095 1837937 R PFAM: aldo/keto reductase; aldo/keto reductase complement(1837095..1837937) Lactobacillus reuteri DSM 20016 5189410 YP_001272363.1 CDS Lreu_1787 NC_009513.1 1838056 1838736 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1838056..1838736 Lactobacillus reuteri DSM 20016 5189956 YP_001272364.1 CDS Lreu_1788 NC_009513.1 1838729 1839709 D PFAM: ATP-binding region, ATPase domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1838729..1839709 Lactobacillus reuteri DSM 20016 5188939 YP_001272365.1 CDS Lreu_1789 NC_009513.1 1839822 1840577 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 1839822..1840577 Lactobacillus reuteri DSM 20016 5189438 YP_001272366.1 CDS Lreu_1790 NC_009513.1 1840580 1842505 D hypothetical protein 1840580..1842505 Lactobacillus reuteri DSM 20016 5189645 YP_001272367.1 CDS Lreu_1791 NC_009513.1 1842746 1843573 D PFAM: homoserine O-succinyltransferase; homoserine O-succinyltransferase 1842746..1843573 Lactobacillus reuteri DSM 20016 5189501 YP_001272368.1 CDS Lreu_1792 NC_009513.1 1843579 1844502 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; cysteine synthase 1843579..1844502 Lactobacillus reuteri DSM 20016 5189472 YP_001272369.1 CDS Lreu_1793 NC_009513.1 1844719 1846212 R PFAM: phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase complement(1844719..1846212) Lactobacillus reuteri DSM 20016 5190108 YP_001272370.1 CDS Lreu_1794 NC_009513.1 1846288 1847448 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1846288..1847448) Lactobacillus reuteri DSM 20016 5190061 YP_001272371.1 CDS Lreu_1795 NC_009513.1 1847550 1848053 R PFAM: Appr-1-p processing domain protein; appr-1-p processing domain-containing protein complement(1847550..1848053) Lactobacillus reuteri DSM 20016 5189541 YP_001272372.1 CDS Lreu_1796 NC_009513.1 1848059 1848679 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(1848059..1848679) Lactobacillus reuteri DSM 20016 5190058 YP_001272373.1 CDS Lreu_1797 NC_009513.1 1848823 1850727 R PFAM: peptidase M13, neprilysin; peptidase M13; endothelin-converting protein 1 complement(1848823..1850727) Lactobacillus reuteri DSM 20016 5188941 YP_001272374.1 CDS Lreu_1798 NC_009513.1 1850801 1851094 R hypothetical protein complement(1850801..1851094) Lactobacillus reuteri DSM 20016 5189381 YP_001272375.1 CDS Lreu_1799 NC_009513.1 1851098 1852390 R hypothetical protein complement(1851098..1852390) Lactobacillus reuteri DSM 20016 5189455 YP_001272376.1 CDS Lreu_1800 NC_009513.1 1852387 1853532 R hypothetical protein complement(1852387..1853532) Lactobacillus reuteri DSM 20016 5190019 YP_001272377.1 CDS Lreu_1801 NC_009513.1 1853536 1854168 R TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); DNA-3-methyladenine glycosylase complement(1853536..1854168) Lactobacillus reuteri DSM 20016 5189392 YP_001272378.1 CDS Lreu_1802 NC_009513.1 1854228 1854602 D PFAM: protein of unknown function DUF488; hypothetical protein 1854228..1854602 Lactobacillus reuteri DSM 20016 5189928 YP_001272379.1 CDS Lreu_1803 NC_009513.1 1854894 1855067 R hypothetical protein complement(1854894..1855067) Lactobacillus reuteri DSM 20016 5189434 YP_001272380.1 CDS Lreu_1804 NC_009513.1 1855070 1855753 R PFAM: NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(1855070..1855753) Lactobacillus reuteri DSM 20016 5188869 YP_001272381.1 CDS Lreu_1805 NC_009513.1 1855759 1856079 R hypothetical protein complement(1855759..1856079) Lactobacillus reuteri DSM 20016 5189515 YP_001272382.1 CDS Lreu_1806 NC_009513.1 1856110 1857069 R hypothetical protein complement(1856110..1857069) Lactobacillus reuteri DSM 20016 5189550 YP_001272383.1 CDS Lreu_1807 NC_009513.1 1857174 1858166 R hypothetical protein complement(1857174..1858166) Lactobacillus reuteri DSM 20016 5189978 YP_001272384.1 CDS Lreu_1808 NC_009513.1 1858394 1858678 D hypothetical protein 1858394..1858678 Lactobacillus reuteri DSM 20016 5190115 YP_001272385.1 CDS Lreu_1809 NC_009513.1 1858865 1859944 R PFAM: phosphoesterase, DHHA1; phosphoesterase, DHHA1 complement(1858865..1859944) Lactobacillus reuteri DSM 20016 5188979 YP_001272386.1 CDS Lreu_1810 NC_009513.1 1860080 1861315 D hypothetical protein 1860080..1861315 Lactobacillus reuteri DSM 20016 5188935 YP_001272387.1 CDS Lreu_1811 NC_009513.1 1861670 1863055 D PFAM: branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 1861670..1863055 Lactobacillus reuteri DSM 20016 5189957 YP_001272388.1 CDS Lreu_1812 NC_009513.1 1863128 1863721 R PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase complement(1863128..1863721) Lactobacillus reuteri DSM 20016 5189526 YP_001272389.1 CDS Lreu_1813 NC_009513.1 1863798 1864577 R PFAM: protein of unknown function DUF1113; hypothetical protein complement(1863798..1864577) Lactobacillus reuteri DSM 20016 5189958 YP_001272390.1 CDS Lreu_1814 NC_009513.1 1864618 1866159 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(1864618..1866159) Lactobacillus reuteri DSM 20016 5190022 YP_001272391.1 CDS Lreu_1815 NC_009513.1 1867868 1868491 D hypothetical protein 1867868..1868491 Lactobacillus reuteri DSM 20016 5189622 YP_001272392.1 CDS Lreu_1816 NC_009513.1 1869393 1870385 D PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; NLP/P60 protein 1869393..1870385 Lactobacillus reuteri DSM 20016 5190067 YP_001272393.1 CDS Lreu_1817 NC_009513.1 1870760 1871755 D PFAM: protein of unknown function DUF534; hypothetical protein 1870760..1871755 Lactobacillus reuteri DSM 20016 5189625 YP_001272394.1 CDS Lreu_1818 NC_009513.1 1871752 1872651 D PFAM: inner-membrane translocator; inner-membrane translocator 1871752..1872651 Lactobacillus reuteri DSM 20016 5189744 YP_001272395.1 CDS Lreu_1819 NC_009513.1 1872644 1873408 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien 1872644..1873408 Lactobacillus reuteri DSM 20016 5189374 YP_001272396.1 CDS Lreu_1820 NC_009513.1 1873476 1874039 D permease cadmium resistance protein-like protein 1873476..1874039 Lactobacillus reuteri DSM 20016 5189574 YP_001272397.1 CDS Lreu_1821 NC_009513.1 1874087 1874419 D PFAM: regulatory protein, ArsR; ArsR family transcriptional regulator 1874087..1874419 Lactobacillus reuteri DSM 20016 5190008 YP_001272398.1 CDS Lreu_1822 NC_009513.1 1874648 1875970 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 1874648..1875970 Lactobacillus reuteri DSM 20016 5190107 YP_001272399.1 CDS Lreu_1823 NC_009513.1 1876041 1876358 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin complement(1876041..1876358) Lactobacillus reuteri DSM 20016 5189443 YP_001272400.1 CDS Lreu_1824 NC_009513.1 1876360 1877115 R PFAM: Integral membrane protein TerC; integral membrane protein TerC complement(1876360..1877115) Lactobacillus reuteri DSM 20016 5190132 YP_001272401.1 CDS Lreu_1825 NC_009513.1 1877134 1878054 R PFAM: pseudouridine synthase; pseudouridine synthase complement(1877134..1878054) Lactobacillus reuteri DSM 20016 5189638 YP_001272402.1 CDS Lreu_1826 NC_009513.1 1878201 1879118 D Mg2+ and Co2+ transporter-like protein 1878201..1879118 Lactobacillus reuteri DSM 20016 5190016 YP_001272403.1 CDS Lreu_1827 NC_009513.1 1879297 1880730 R PFAM: peptidase U34, dipeptidase; peptidase U34, dipeptidase complement(1879297..1880730) Lactobacillus reuteri DSM 20016 5189990 YP_001272404.1 CDS Lreu_1828 NC_009513.1 1881099 1882427 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; uracil-xanthine permease 1881099..1882427 Lactobacillus reuteri DSM 20016 5189587 YP_001272405.1 CDS Lreu_1829 NC_009513.1 1882739 1884124 D PFAM: Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1882739..1884124 Lactobacillus reuteri DSM 20016 5189970 YP_001272406.1 CDS Lreu_1830 NC_009513.1 1884405 1885706 R TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase complement(1884405..1885706) Lactobacillus reuteri DSM 20016 5189992 YP_001272407.1 CDS Lreu_1831 NC_009513.1 1886035 1886559 R hypothetical protein complement(1886035..1886559) Lactobacillus reuteri DSM 20016 5189725 YP_001272408.1 CDS Lreu_1832 NC_009513.1 1886800 1887735 R TIGRFAM: histidine decarboxylase, pyruvoyl type; PFAM: histidine carboxylase, PI chain; histidine decarboxylase, pyruvoyl type complement(1886800..1887735) Lactobacillus reuteri DSM 20016 5189585 YP_001272409.1 CDS Lreu_1833 NC_009513.1 1887992 1889446 R PFAM: amino acid permease-associated region; Amino acid transporter, transmembrane; amino acid permease-associated protein complement(1887992..1889446) Lactobacillus reuteri DSM 20016 5189685 YP_001272410.1 CDS Lreu_1834 NC_009513.1 1889595 1890011 R hypothetical protein complement(1889595..1890011) Lactobacillus reuteri DSM 20016 5189636 YP_001272411.1 CDS Lreu_1835 NC_009513.1 1890035 1890979 R hypothetical protein complement(1890035..1890979) Lactobacillus reuteri DSM 20016 5189488 YP_001272412.1 CDS Lreu_1836 NC_009513.1 1891394 1892947 R PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; C4-dicarboxylate anaerobic carrier complement(1891394..1892947) Lactobacillus reuteri DSM 20016 5189751 YP_001272413.1 CDS Lreu_1837 NC_009513.1 1893116 1893769 R PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(1893116..1893769) Lactobacillus reuteri DSM 20016 5189393 YP_001272414.1 CDS Lreu_1838 NC_009513.1 1893901 1894164 D hypothetical protein 1893901..1894164 Lactobacillus reuteri DSM 20016 5190084 YP_001272415.1 CDS Lreu_1839 NC_009513.1 1894290 1896419 D PFAM: sulfatase; sulfatase 1894290..1896419 Lactobacillus reuteri DSM 20016 5189510 YP_001272416.1 CDS Lreu_1840 NC_009513.1 1896578 1897699 D PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; iron-containing alcohol dehydrogenase 1896578..1897699 Lactobacillus reuteri DSM 20016 5189697 YP_001272417.1 CDS Lreu_1841 NC_009513.1 1897863 1898717 R PFAM: hydrolase family protein; hydrolase family protein complement(1897863..1898717) Lactobacillus reuteri DSM 20016 5189471 YP_001272418.1 CDS Lreu_1842 NC_009513.1 1898785 1899996 R PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; serine-type D-Ala-D-Ala carboxypeptidase complement(1898785..1899996) Lactobacillus reuteri DSM 20016 5188874 YP_001272419.1 CDS Lreu_1843 NC_009513.1 1900067 1900648 D hypothetical protein 1900067..1900648 Lactobacillus reuteri DSM 20016 5190002 YP_001272420.1 CDS Lreu_1844 NC_009513.1 1900847 1901503 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(1900847..1901503) Lactobacillus reuteri DSM 20016 5190098 YP_001272421.1 CDS Lreu_1846 NC_009513.1 1903672 1904310 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family N-terminal domain protein; carbohydrate kinase 1903672..1904310 Lactobacillus reuteri DSM 20016 5189728 YP_001272422.1 CDS Lreu_1847 NC_009513.1 1904414 1904908 D hypothetical protein 1904414..1904908 Lactobacillus reuteri DSM 20016 5189720 YP_001272423.1 CDS Lreu_1848 NC_009513.1 1905034 1906311 R TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase complement(1905034..1906311) Lactobacillus reuteri DSM 20016 5190085 YP_001272424.1 CDS Lreu_1849 NC_009513.1 1906633 1907829 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1906633..1907829) Lactobacillus reuteri DSM 20016 5189448 YP_001272425.1 CDS Lreu_1850 NC_009513.1 1907831 1908451 R hypothetical protein complement(1907831..1908451) Lactobacillus reuteri DSM 20016 5189977 YP_001272426.1 CDS Lreu_1851 NC_009513.1 1908676 1908861 D hypothetical protein 1908676..1908861 Lactobacillus reuteri DSM 20016 5189430 YP_001272427.1 CDS Lreu_1852 NC_009513.1 1908994 1909938 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator complement(1908994..1909938) Lactobacillus reuteri DSM 20016 5189972 YP_001272428.1 CDS Lreu_1853 NC_009513.1 1910366 1912072 D PFAM: Peptidoglycan-binding LysM; Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 1910366..1912072 Lactobacillus reuteri DSM 20016 5189952 YP_001272429.1 CDS Lreu_1854 NC_009513.1 1912240 1912554 D PFAM: regulatory protein, ArsR; ArsR family transcriptional regulator 1912240..1912554 Lactobacillus reuteri DSM 20016 5190087 YP_001272430.1 CDS Lreu_1855 NC_009513.1 1912659 1912895 R hypothetical protein complement(1912659..1912895) Lactobacillus reuteri DSM 20016 5190013 YP_001272431.1 CDS Lreu_1856 NC_009513.1 1912999 1914981 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; ABC transporter-like protien complement(1912999..1914981) Lactobacillus reuteri DSM 20016 5189964 YP_001272432.1 CDS Lreu_1857 NC_009513.1 1915079 1915768 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protien complement(1915079..1915768) Lactobacillus reuteri DSM 20016 5190035 YP_001272433.1 CDS Lreu_1858 NC_009513.1 1915786 1916844 R PFAM: protein of unknown function DUF214; hypothetical protein complement(1915786..1916844) Lactobacillus reuteri DSM 20016 5190014 YP_001272434.1 CDS Lreu_1859 NC_009513.1 1916855 1917394 R PFAM: regulatory protein, TetR; transcriptional regulator complement(1916855..1917394) Lactobacillus reuteri DSM 20016 5189749 YP_001272435.1 CDS Lreu_1860 NC_009513.1 1917630 1918640 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(1917630..1918640) Lactobacillus reuteri DSM 20016 5189738 YP_001272436.1 CDS Lreu_1861 NC_009513.1 1919211 1920803 D TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; Mn2+/Fe2+ transporter 1919211..1920803 Lactobacillus reuteri DSM 20016 5189762 YP_001272437.1 CDS Lreu_1862 NC_009513.1 1921069 1921746 D hypothetical protein 1921069..1921746 Lactobacillus reuteri DSM 20016 5189783 YP_001272438.1 CDS Lreu_1863 NC_009513.1 1922075 1923880 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase, SAD; threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase 1922075..1923880 Lactobacillus reuteri DSM 20016 5189665 YP_001272439.1 CDS Lreu_1865 NC_009513.1 1925702 1926994 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; type I phosphodiesterase/nucleotide pyrophosphatase complement(1925702..1926994) Lactobacillus reuteri DSM 20016 5190121 YP_001272440.1 CDS Lreu_1866 NC_009513.1 1927242 1928618 D PFAM: Spore germination protein; amino acid permease-associated region; amino acid permease-associated protein 1927242..1928618 Lactobacillus reuteri DSM 20016 5189650 YP_001272441.1 CDS Lreu_1867 NC_009513.1 1928683 1929639 R TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase complement(1928683..1929639) Lactobacillus reuteri DSM 20016 5189363 YP_001272442.1 CDS Lreu_1868 NC_009513.1 1930083 1930274 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1930083..1930274 Lactobacillus reuteri DSM 20016 5190054 YP_001272443.1 CDS Lreu_1869 NC_009513.1 1930274 1930801 D hypothetical protein 1930274..1930801 Lactobacillus reuteri DSM 20016 5189463 YP_001272444.1 CDS Lreu_1870 NC_009513.1 1931197 1932333 D PFAM: Methionine synthase, vitamin-B12 independent; methionine synthase, vitamin-B12 independent 1931197..1932333 Lactobacillus reuteri DSM 20016 5188956 YP_001272445.1 CDS Lreu_1871 NC_009513.1 1932386 1932631 R PFAM: cytochrome b5; cytochrome b5 complement(1932386..1932631) Lactobacillus reuteri DSM 20016 5188899 YP_001272446.1 CDS Lreu_1872 NC_009513.1 1932644 1932862 R PFAM: cytochrome b5; cytochrome b5 complement(1932644..1932862) Lactobacillus reuteri DSM 20016 5189640 YP_001272447.1 CDS Lreu_1873 NC_009513.1 1932997 1933230 R PFAM: cytochrome b5; cytochrome b5 complement(1932997..1933230) Lactobacillus reuteri DSM 20016 5189577 YP_001272448.1 CDS Lreu_1874 NC_009513.1 1933359 1933796 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1933359..1933796) Lactobacillus reuteri DSM 20016 5188942 YP_001272449.1 CDS Lreu_1875 NC_009513.1 1933975 1934631 R hypothetical protein complement(1933975..1934631) Lactobacillus reuteri DSM 20016 5190095 YP_001272450.1 CDS Lreu_1876 NC_009513.1 1934759 1935127 R PFAM: helix-turn-helix, HxlR type; HxlR family transcriptional regulator complement(1934759..1935127) Lactobacillus reuteri DSM 20016 5190078 YP_001272451.1 CDS Lreu_1877 NC_009513.1 1935168 1935770 D nitroreductase-like oxidoreductase 1935168..1935770 Lactobacillus reuteri DSM 20016 5189632 YP_001272452.1 CDS Lreu_1878 NC_009513.1 1935835 1936287 D PFAM: regulatory protein, ArsR; helix-turn-helix, HxlR type; HxlR family transcriptional regulator 1935835..1936287 Lactobacillus reuteri DSM 20016 5189520 YP_001272453.1 CDS Lreu_1879 NC_009513.1 1936280 1937593 R hypothetical protein complement(1936280..1937593) Lactobacillus reuteri DSM 20016 5189976 YP_001272454.1 CDS Lreu_1880 NC_009513.1 1937605 1938780 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1937605..1938780) Lactobacillus reuteri DSM 20016 5190114 YP_001272455.1 CDS Lreu_1881 NC_009513.1 1938930 1940252 R PFAM: peptidase C1B, bleomycin hydrolase; Bleomycin hydrolase complement(1938930..1940252) Lactobacillus reuteri DSM 20016 5189529 YP_001272456.1 CDS Lreu_1882 NC_009513.1 1940460 1941101 D PFAM: NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1940460..1941101 Lactobacillus reuteri DSM 20016 5189452 YP_001272457.1 CDS Lreu_1883 NC_009513.1 1941247 1943778 D PFAM: Peptidase M1, membrane alanine aminopeptidase-like; peptidase M1, membrane alanine aminopeptidase-like protein 1941247..1943778 Lactobacillus reuteri DSM 20016 5189499 YP_001272458.1 CDS Lreu_1884 NC_009513.1 1944001 1944561 D hypothetical protein 1944001..1944561 Lactobacillus reuteri DSM 20016 5189475 YP_001272459.1 CDS Lreu_1885 NC_009513.1 1944940 1945950 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1944940..1945950 Lactobacillus reuteri DSM 20016 5190139 YP_001272460.1 CDS asnC NC_009513.1 1945970 1947268 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1945970..1947268 Lactobacillus reuteri DSM 20016 5189464 YP_001272461.1 CDS Lreu_1887 NC_009513.1 1947462 1948142 R PFAM: EAL domain protein; diguanylate phosphodiesterase complement(1947462..1948142) Lactobacillus reuteri DSM 20016 5190151 YP_001272462.1 CDS Lreu_1888 NC_009513.1 1948158 1949267 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase complement(1948158..1949267) Lactobacillus reuteri DSM 20016 5190123 YP_001272463.1 CDS Lreu_1889 NC_009513.1 1949518 1950015 D hypothetical protein 1949518..1950015 Lactobacillus reuteri DSM 20016 5188970 YP_001272464.1 CDS Lreu_1890 NC_009513.1 1950005 1951336 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1950005..1951336 Lactobacillus reuteri DSM 20016 5189131 YP_001272465.1 CDS Lreu_1891 NC_009513.1 1951323 1952150 D diguanylate phosphodiesterase 1951323..1952150 Lactobacillus reuteri DSM 20016 5188517 YP_001272466.1 CDS Lreu_1892 NC_009513.1 1952253 1952711 R PFAM: transposase IS200-family protein; transposase IS200-family protein complement(1952253..1952711) Lactobacillus reuteri DSM 20016 5188442 YP_001272467.1 CDS Lreu_1893 NC_009513.1 1952965 1953636 R PFAM: glutamine amidotransferase class-I; glutamine amidotransferase complement(1952965..1953636) Lactobacillus reuteri DSM 20016 5188562 YP_001272468.1 CDS Lreu_1894 NC_009513.1 1953738 1954100 R hypothetical protein complement(1953738..1954100) Lactobacillus reuteri DSM 20016 5188533 YP_001272469.1 CDS Lreu_1895 NC_009513.1 1954215 1954859 R NADH-flavin reductase-like protein complement(1954215..1954859) Lactobacillus reuteri DSM 20016 5188571 YP_001272470.1 CDS Lreu_1896 NC_009513.1 1954859 1956001 R hypothetical protein complement(1954859..1956001) Lactobacillus reuteri DSM 20016 5188361 YP_001272471.1 CDS Lreu_1897 NC_009513.1 1956093 1956671 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1956093..1956671 Lactobacillus reuteri DSM 20016 5189050 YP_001272472.1 CDS Lreu_1898 NC_009513.1 1956772 1957650 R PFAM: aldo/keto reductase; 2,5-didehydrogluconate reductase complement(1956772..1957650) Lactobacillus reuteri DSM 20016 5188599 YP_001272473.1 CDS Lreu_1899 NC_009513.1 1957773 1958645 D PFAM: regulatory protein, LysR; LysR family transcriptional regulator 1957773..1958645 Lactobacillus reuteri DSM 20016 5189087 YP_001272474.1 CDS Lreu_1900 NC_009513.1 1958723 1959712 D TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; asparaginase 1958723..1959712 Lactobacillus reuteri DSM 20016 5189123 YP_001272475.1 CDS Lreu_1901 NC_009513.1 1959771 1960772 R PFAM: protein of unknown function DUF1002; hypothetical protein complement(1959771..1960772) Lactobacillus reuteri DSM 20016 5189800 YP_001272476.1 CDS Lreu_1902 NC_009513.1 1960930 1962123 R PFAM: aminotransferase, class I and II; aromatic amino acid aminotransferase/2-aminoadipate aminotransferase complement(1960930..1962123) Lactobacillus reuteri DSM 20016 5189527 YP_001272477.1 CDS Lreu_1903 NC_009513.1 1962169 1963119 R PFAM: Lactate/malate dehydrogenase; malate dehydrogenase (NAD) complement(1962169..1963119) Lactobacillus reuteri DSM 20016 5189371 YP_001272478.1 CDS Lreu_1904 NC_009513.1 1963170 1963982 R PFAM: Hydratase/decarboxylase; hydratase/decarboxylase complement(1963170..1963982) Lactobacillus reuteri DSM 20016 5190118 YP_001272479.1 CDS Lreu_1905 NC_009513.1 1964518 1965231 R PFAM: hydrolase family protein; hydrolase family protein complement(1964518..1965231) Lactobacillus reuteri DSM 20016 5189975 YP_001272480.1 CDS Lreu_1906 NC_009513.1 1965330 1965860 R PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(1965330..1965860) Lactobacillus reuteri DSM 20016 5189889 YP_001272481.1 CDS Lreu_1907 NC_009513.1 1965977 1966846 D PFAM: regulatory protein, LysR; LysR, substrate-binding; transcriptional regulator 1965977..1966846 Lactobacillus reuteri DSM 20016 5189695 YP_001272482.1 CDS Lreu_1908 NC_009513.1 1966905 1967390 R hypothetical protein complement(1966905..1967390) Lactobacillus reuteri DSM 20016 5189802 YP_001272483.1 CDS Lreu_1910 NC_009513.1 1967883 1968203 D PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 1967883..1968203 Lactobacillus reuteri DSM 20016 5189238 YP_001272484.1 CDS Lreu_1911 NC_009513.1 1968290 1969132 D hypothetical protein 1968290..1969132 Lactobacillus reuteri DSM 20016 5188714 YP_001272485.1 CDS Lreu_1912 NC_009513.1 1969147 1970307 D PFAM: aminotransferase, class I and II; class I and II aminotransferase 1969147..1970307 Lactobacillus reuteri DSM 20016 5188868 YP_001272486.1 CDS Lreu_1914 NC_009513.1 1970965 1971894 D PFAM: Auxin Efflux Carrier; auxin efflux carrier 1970965..1971894 Lactobacillus reuteri DSM 20016 5189398 YP_001272487.1 CDS Lreu_1915 NC_009513.1 1971996 1972673 D PFAM: bifunctional deaminase-reductase domain protein; deaminase-reductase domain-containing protein 1971996..1972673 Lactobacillus reuteri DSM 20016 5189401 YP_001272488.1 CDS Lreu_1916 NC_009513.1 1973501 1974469 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(1973501..1974469) Lactobacillus reuteri DSM 20016 5190041 YP_001272489.1 CDS Lreu_1918 NC_009513.1 1974992 1975159 D hypothetical protein 1974992..1975159 Lactobacillus reuteri DSM 20016 5190049 YP_001272490.1 CDS Lreu_1919 NC_009513.1 1975480 1975734 D hypothetical protein 1975480..1975734 Lactobacillus reuteri DSM 20016 5190048 YP_001272491.1 CDS Lreu_1922 NC_009513.1 1976673 1977167 D PFAM: YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 1976673..1977167 Lactobacillus reuteri DSM 20016 5190156 YP_001272492.1 CDS Lreu_1923 NC_009513.1 1977187 1977513 D PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1977187..1977513 Lactobacillus reuteri DSM 20016 5188890 YP_001272493.1 CDS Lreu_1924 NC_009513.1 1977587 1978609 R PFAM: beta-lactamase; beta-lactamase complement(1977587..1978609) Lactobacillus reuteri DSM 20016 5190044 YP_001272494.1 CDS Lreu_1925 NC_009513.1 1978823 1979359 D TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 1978823..1979359 Lactobacillus reuteri DSM 20016 5190040 YP_001272495.1 CDS Lreu_1926 NC_009513.1 1979517 1980167 D PFAM: MgtC/SapB transporter; MgtC/SapB transporter 1979517..1980167 Lactobacillus reuteri DSM 20016 5190028 YP_001272496.1 CDS Lreu_1927 NC_009513.1 1980187 1980819 D hypothetical protein 1980187..1980819 Lactobacillus reuteri DSM 20016 5189563 YP_001272497.1 CDS Lreu_1928 NC_009513.1 1981112 1981765 R hypothetical protein complement(1981112..1981765) Lactobacillus reuteri DSM 20016 5189375 YP_001272498.1 CDS Lreu_1929 NC_009513.1 1981839 1982162 R PFAM: branched-chain amino acid transport; branched-chain amino acid transporter complement(1981839..1982162) Lactobacillus reuteri DSM 20016 5190104 YP_001272499.1 CDS Lreu_1930 NC_009513.1 1982149 1982841 R PFAM: AzlC family protein; AzlC family protein complement(1982149..1982841) Lactobacillus reuteri DSM 20016 5189996 YP_001272500.1 CDS Lreu_1931 NC_009513.1 1982947 1984347 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 1982947..1984347 Lactobacillus reuteri DSM 20016 5188572 YP_001272501.1 CDS Lreu_1932 NC_009513.1 1984431 1985999 R PFAM: amidohydrolase; Amidohydrolase 3; amidohydrolase 3 complement(1984431..1985999) Lactobacillus reuteri DSM 20016 5188867 YP_001272502.1 CDS Lreu_1933 NC_009513.1 1986147 1987010 R PFAM: aldo/keto reductase; aldo/keto reductase complement(1986147..1987010) Lactobacillus reuteri DSM 20016 5190030 YP_001272503.1 CDS Lreu_1934 NC_009513.1 1987152 1987649 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1987152..1987649) Lactobacillus reuteri DSM 20016 5189164 YP_001272504.1 CDS Lreu_1935 NC_009513.1 1987687 1988292 R TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I complement(1987687..1988292) Lactobacillus reuteri DSM 20016 5188983 YP_001272505.1 CDS Lreu_1936 NC_009513.1 1988605 1989849 R ATP-grasp protein-like protein complement(1988605..1989849) Lactobacillus reuteri DSM 20016 5190093 YP_001272506.1 CDS murE NC_009513.1 1989867 1991417 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1989867..1991417) Lactobacillus reuteri DSM 20016 5189445 YP_001272507.1 CDS Lreu_1938 NC_009513.1 1991559 1993478 R TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase complement(1991559..1993478) Lactobacillus reuteri DSM 20016 5189503 YP_001272508.1 CDS gidA NC_009513.1 1993677 1995620 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(1993677..1995620) Lactobacillus reuteri DSM 20016 5190106 YP_001272509.1 CDS trmE NC_009513.1 1995632 1997020 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(1995632..1997020) Lactobacillus reuteri DSM 20016 5188893 YP_001272510.1 CDS Lreu_1941 NC_009513.1 1997177 1997944 R PFAM: single-stranded nucleic acid binding R3H domain protein; single-stranded nucleic acid binding R3H domain-containing protein complement(1997177..1997944) Lactobacillus reuteri DSM 20016 5188896 YP_001272511.1 CDS Lreu_1942 NC_009513.1 1998040 1998831 R PFAM: 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(1998040..1998831) Lactobacillus reuteri DSM 20016 5189545 YP_001272512.1 CDS rnpA NC_009513.1 1998877 1999230 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(1998877..1999230) Lactobacillus reuteri DSM 20016 5188578 YP_001272513.1 CDS rpmH NC_009513.1 1999369 1999503 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1999369..1999503) Lactobacillus reuteri DSM 20016 5189758 Lreu_R0001 tRNA Lreu_R0001 NC_009513.1 18213 18288 R tRNA-Lys complement(18213..18288) Lactobacillus reuteri DSM 20016 5190007 Lreu_R0002 tRNA Lreu_R0002 NC_009513.1 20774 20849 R tRNA-Lys complement(20774..20849) Lactobacillus reuteri DSM 20016 5189365 Lreu_R0006 tRNA Lreu_R0006 NC_009513.1 182702 182774 D tRNA-Thr 182702..182774 Lactobacillus reuteri DSM 20016 5190127 Lreu_R0007 tRNA Lreu_R0007 NC_009513.1 204045 204119 D tRNA-His 204045..204119 Lactobacillus reuteri DSM 20016 5189852 Lreu_R0008 tRNA Lreu_R0008 NC_009513.1 233600 233673 D tRNA-Thr 233600..233673 Lactobacillus reuteri DSM 20016 5189729 Lreu_R0012 tRNA Lreu_R0012 NC_009513.1 317289 317361 D tRNA-Asn 317289..317361 Lactobacillus reuteri DSM 20016 5188716 Lreu_R0013 tRNA Lreu_R0013 NC_009513.1 317408 317480 D tRNA-Thr 317408..317480 Lactobacillus reuteri DSM 20016 5189598 Lreu_R0014 tRNA Lreu_R0014 NC_009513.1 320661 320733 D tRNA-Asn 320661..320733 Lactobacillus reuteri DSM 20016 5189740 Lreu_R0015 tRNA Lreu_R0015 NC_009513.1 324334 324416 D tRNA-Tyr 324334..324416 Lactobacillus reuteri DSM 20016 5188818 Lreu_R0016 tRNA Lreu_R0016 NC_009513.1 324427 324498 D tRNA-Gln 324427..324498 Lactobacillus reuteri DSM 20016 5189621 Lreu_R0017 tRNA Lreu_R0017 NC_009513.1 335218 335306 D tRNA-Leu 335218..335306 Lactobacillus reuteri DSM 20016 5189399 Lreu_R0020 tRNA Lreu_R0020 NC_009513.1 485359 485431 D tRNA-Gln 485359..485431 Lactobacillus reuteri DSM 20016 5189440 Lreu_R0021 tRNA Lreu_R0021 NC_009513.1 487534 487606 D tRNA-Glu 487534..487606 Lactobacillus reuteri DSM 20016 5189432 Lreu_R0023 tRNA Lreu_R0023 NC_009513.1 626044 626118 D tRNA-Ile 626044..626118 Lactobacillus reuteri DSM 20016 5188750 Lreu_R0024 tRNA Lreu_R0024 NC_009513.1 626122 626194 D tRNA-Ala 626122..626194 Lactobacillus reuteri DSM 20016 5188781 Lreu_R0027 tRNA Lreu_R0027 NC_009513.1 629476 629548 D tRNA-Val 629476..629548 Lactobacillus reuteri DSM 20016 5188904 Lreu_R0028 tRNA Lreu_R0028 NC_009513.1 629567 629639 D tRNA-Lys 629567..629639 Lactobacillus reuteri DSM 20016 5189879 Lreu_R0029 tRNA Lreu_R0029 NC_009513.1 629683 629755 D tRNA-Thr 629683..629755 Lactobacillus reuteri DSM 20016 5188931 Lreu_R0030 tRNA Lreu_R0030 NC_009513.1 629765 629836 D tRNA-Gly 629765..629836 Lactobacillus reuteri DSM 20016 5188988 Lreu_R0031 tRNA Lreu_R0031 NC_009513.1 629853 629938 D tRNA-Leu 629853..629938 Lactobacillus reuteri DSM 20016 5188928 Lreu_R0032 tRNA Lreu_R0032 NC_009513.1 629947 630020 D tRNA-Arg 629947..630020 Lactobacillus reuteri DSM 20016 5189629 Lreu_R0033 tRNA Lreu_R0033 NC_009513.1 630026 630099 D tRNA-Pro 630026..630099 Lactobacillus reuteri DSM 20016 5190026 Lreu_R0034 tRNA Lreu_R0034 NC_009513.1 630130 630203 D tRNA-Met 630130..630203 Lactobacillus reuteri DSM 20016 5189870 Lreu_R0035 tRNA Lreu_R0035 NC_009513.1 630219 630295 D tRNA-Met 630219..630295 Lactobacillus reuteri DSM 20016 5189523 Lreu_R0036 tRNA Lreu_R0036 NC_009513.1 630345 630432 D tRNA-Ser 630345..630432 Lactobacillus reuteri DSM 20016 5190064 Lreu_R0037 tRNA Lreu_R0037 NC_009513.1 630441 630514 D tRNA-Met 630441..630514 Lactobacillus reuteri DSM 20016 5189794 Lreu_R0038 tRNA Lreu_R0038 NC_009513.1 630519 630593 D tRNA-Asp 630519..630593 Lactobacillus reuteri DSM 20016 5189969 Lreu_R0039 tRNA Lreu_R0039 NC_009513.1 630603 630675 D tRNA-Phe 630603..630675 Lactobacillus reuteri DSM 20016 5189881 Lreu_R0040 tRNA Lreu_R0040 NC_009513.1 630691 630761 D tRNA-Gly 630691..630761 Lactobacillus reuteri DSM 20016 5190047 Lreu_R0041 tRNA Lreu_R0041 NC_009513.1 630771 630845 D tRNA-Ile 630771..630845 Lactobacillus reuteri DSM 20016 5189567 Lreu_R0042 tRNA Lreu_R0042 NC_009513.1 630848 630935 D tRNA-Ser 630848..630935 Lactobacillus reuteri DSM 20016 5190164 Lreu_R0043 tRNA Lreu_R0043 NC_009513.1 630940 631011 D tRNA-Glu 630940..631011 Lactobacillus reuteri DSM 20016 5188821 Lreu_R0044 tRNA Lreu_R0044 NC_009513.1 631022 631095 D tRNA-Met 631022..631095 Lactobacillus reuteri DSM 20016 5189686 Lreu_R0045 tRNA Lreu_R0045 NC_009513.1 631100 631174 D tRNA-Asp 631100..631174 Lactobacillus reuteri DSM 20016 5190140 Lreu_R0047 tRNA Lreu_R0047 NC_009513.1 641225 641299 D tRNA-Ile 641225..641299 Lactobacillus reuteri DSM 20016 5188757 Lreu_R0048 tRNA Lreu_R0048 NC_009513.1 641303 641375 D tRNA-Ala 641303..641375 Lactobacillus reuteri DSM 20016 5188989 Lreu_R0051 tRNA Lreu_R0051 NC_009513.1 741822 741909 R tRNA-Ser complement(741822..741909) Lactobacillus reuteri DSM 20016 5189551 Lreu_R0052 tRNA Lreu_R0052 NC_009513.1 1030554 1030625 D tRNA-Arg 1030554..1030625 Lactobacillus reuteri DSM 20016 5189089 Lreu_R0053 tRNA Lreu_R0053 NC_009513.1 1035974 1036045 R tRNA-Gln complement(1035974..1036045) Lactobacillus reuteri DSM 20016 5189090 Lreu_R0054 tRNA Lreu_R0054 NC_009513.1 1036085 1036157 R tRNA-Val complement(1036085..1036157) Lactobacillus reuteri DSM 20016 5189073 Lreu_R0055 tRNA Lreu_R0055 NC_009513.1 1036163 1036234 R tRNA-Glu complement(1036163..1036234) Lactobacillus reuteri DSM 20016 5189160 Lreu_R0056 tRNA Lreu_R0056 NC_009513.1 1036252 1036322 R tRNA-Gly complement(1036252..1036322) Lactobacillus reuteri DSM 20016 5188337 Lreu_R0057 tRNA Lreu_R0057 NC_009513.1 1036507 1036580 R tRNA-Pro complement(1036507..1036580) Lactobacillus reuteri DSM 20016 5188231 Lreu_R0058 tRNA Lreu_R0058 NC_009513.1 1036584 1036672 R tRNA-Leu complement(1036584..1036672) Lactobacillus reuteri DSM 20016 5188386 Lreu_R0059 tRNA Lreu_R0059 NC_009513.1 1036689 1036760 R tRNA-Gly complement(1036689..1036760) Lactobacillus reuteri DSM 20016 5189332 Lreu_R0060 tRNA Lreu_R0060 NC_009513.1 1036766 1036837 R tRNA-Glu complement(1036766..1036837) Lactobacillus reuteri DSM 20016 5189288 Lreu_R0061 tRNA Lreu_R0061 NC_009513.1 1047022 1047095 D tRNA-Pro 1047022..1047095 Lactobacillus reuteri DSM 20016 5188431 Lreu_R0065 tRNA Lreu_R0065 NC_009513.1 1244027 1244100 D tRNA-Arg 1244027..1244100 Lactobacillus reuteri DSM 20016 5188595 Lreu_R0066 tRNA Lreu_R0066 NC_009513.1 1323697 1323767 R tRNA-Gly complement(1323697..1323767) Lactobacillus reuteri DSM 20016 5188678 Lreu_R0067 tRNA Lreu_R0067 NC_009513.1 1329501 1329587 R tRNA-Leu complement(1329501..1329587) Lactobacillus reuteri DSM 20016 5188276 Lreu_R0068 tRNA Lreu_R0068 NC_009513.1 1369035 1369119 R tRNA-Leu complement(1369035..1369119) Lactobacillus reuteri DSM 20016 5189899 Lreu_R0069 tRNA Lreu_R0069 NC_009513.1 1369134 1369204 R tRNA-Cys complement(1369134..1369204) Lactobacillus reuteri DSM 20016 5188165 Lreu_R0070 tRNA Lreu_R0070 NC_009513.1 1369241 1369315 R tRNA-His complement(1369241..1369315) Lactobacillus reuteri DSM 20016 5188556 Lreu_R0071 tRNA Lreu_R0071 NC_009513.1 1369333 1369403 R tRNA-Trp complement(1369333..1369403) Lactobacillus reuteri DSM 20016 5188240 Lreu_R0072 tRNA Lreu_R0072 NC_009513.1 1369410 1369492 R tRNA-Tyr complement(1369410..1369492) Lactobacillus reuteri DSM 20016 5188712 Lreu_R0073 tRNA Lreu_R0073 NC_009513.1 1369498 1369570 R tRNA-Phe complement(1369498..1369570) Lactobacillus reuteri DSM 20016 5188584 Lreu_R0074 tRNA Lreu_R0074 NC_009513.1 1369607 1369679 R tRNA-Val complement(1369607..1369679) Lactobacillus reuteri DSM 20016 5188260 Lreu_R0075 tRNA Lreu_R0075 NC_009513.1 1369685 1369756 R tRNA-Glu complement(1369685..1369756) Lactobacillus reuteri DSM 20016 5188251 Lreu_R0076 tRNA Lreu_R0076 NC_009513.1 1369764 1369855 R tRNA-Ser complement(1369764..1369855) Lactobacillus reuteri DSM 20016 5188683 Lreu_R0079 tRNA Lreu_R0079 NC_009513.1 1373183 1373255 R tRNA-Ala complement(1373183..1373255) Lactobacillus reuteri DSM 20016 5188577 Lreu_R0080 tRNA Lreu_R0080 NC_009513.1 1373259 1373333 R tRNA-Ile complement(1373259..1373333) Lactobacillus reuteri DSM 20016 5189197 Lreu_R0082 tRNA Lreu_R0082 NC_009513.1 1448882 1448954 R tRNA-Arg complement(1448882..1448954) Lactobacillus reuteri DSM 20016 5188669 Lreu_R0083 tRNA Lreu_R0083 NC_009513.1 1551234 1551307 R tRNA-Pro complement(1551234..1551307) Lactobacillus reuteri DSM 20016 5188693 Lreu_R0084 tRNA Lreu_R0084 NC_009513.1 1551350 1551426 R tRNA-Arg complement(1551350..1551426) Lactobacillus reuteri DSM 20016 5188676 Lreu_R0085 tRNA Lreu_R0085 NC_009513.1 1551432 1551503 R tRNA-Gly complement(1551432..1551503) Lactobacillus reuteri DSM 20016 5188532 Lreu_R0086 tRNA Lreu_R0086 NC_009513.1 1551594 1551676 R tRNA-Leu complement(1551594..1551676) Lactobacillus reuteri DSM 20016 5188436 Lreu_R0087 tRNA Lreu_R0087 NC_009513.1 1551684 1551756 R tRNA-Val complement(1551684..1551756) Lactobacillus reuteri DSM 20016 5188153 Lreu_R0088 tRNA Lreu_R0088 NC_009513.1 1573126 1573200 R tRNA-Asp complement(1573126..1573200) Lactobacillus reuteri DSM 20016 5189345 Lreu_R0003 rRNA Lreu_R0003 NC_009513.1 177719 179305 D 16S ribosomal RNA 177719..179305 Lactobacillus reuteri DSM 20016 5188654 Lreu_R0004 rRNA Lreu_R0004 NC_009513.1 179499 182423 D 23S ribosomal RNA 179499..182423 Lactobacillus reuteri DSM 20016 5189760 Lreu_R0005 rRNA Lreu_R0005 NC_009513.1 182502 182620 D 5S ribosomal RNA 182502..182620 Lactobacillus reuteri DSM 20016 5189008 Lreu_R0009 rRNA Lreu_R0009 NC_009513.1 312384 313970 D 16S ribosomal RNA 312384..313970 Lactobacillus reuteri DSM 20016 5189531 Lreu_R0010 rRNA Lreu_R0010 NC_009513.1 314164 317088 D 23S ribosomal RNA 314164..317088 Lactobacillus reuteri DSM 20016 5188924 Lreu_R0011 rRNA Lreu_R0011 NC_009513.1 317167 317286 D 5S ribosomal RNA 317167..317286 Lactobacillus reuteri DSM 20016 5188840 Lreu_R0022 rRNA Lreu_R0022 NC_009513.1 624373 625959 D 16S ribosomal RNA 624373..625959 Lactobacillus reuteri DSM 20016 5189383 Lreu_R0025 rRNA Lreu_R0025 NC_009513.1 626353 629277 D 23S ribosomal RNA 626353..629277 Lactobacillus reuteri DSM 20016 5188953 Lreu_R0026 rRNA Lreu_R0026 NC_009513.1 629355 629474 D 5S ribosomal RNA 629355..629474 Lactobacillus reuteri DSM 20016 5189666 Lreu_R0046 rRNA Lreu_R0046 NC_009513.1 639554 641140 D 16S ribosomal RNA 639554..641140 Lactobacillus reuteri DSM 20016 5188827 Lreu_R0049 rRNA Lreu_R0049 NC_009513.1 641534 644458 D 23S ribosomal RNA 641534..644458 Lactobacillus reuteri DSM 20016 5189690 Lreu_R0050 rRNA Lreu_R0050 NC_009513.1 644537 644656 D 5S ribosomal RNA 644537..644656 Lactobacillus reuteri DSM 20016 5190033 Lreu_R0062 rRNA Lreu_R0062 NC_009513.1 1074436 1074556 R 5S ribosomal RNA complement(1074436..1074556) Lactobacillus reuteri DSM 20016 5188491 Lreu_R0063 rRNA Lreu_R0063 NC_009513.1 1074635 1077558 R 23S ribosomal RNA complement(1074635..1077558) Lactobacillus reuteri DSM 20016 5188478 Lreu_R0064 rRNA Lreu_R0064 NC_009513.1 1077752 1079338 R 16S ribosomal RNA complement(1077752..1079338) Lactobacillus reuteri DSM 20016 5188891 Lreu_R0077 rRNA Lreu_R0077 NC_009513.1 1369902 1370022 R 5S ribosomal RNA complement(1369902..1370022) Lactobacillus reuteri DSM 20016 5188548 Lreu_R0078 rRNA Lreu_R0078 NC_009513.1 1370101 1373025 R 23S ribosomal RNA complement(1370101..1373025) Lactobacillus reuteri DSM 20016 5189297 Lreu_R0081 rRNA Lreu_R0081 NC_009513.1 1373419 1375005 R 16S ribosomal RNA complement(1373419..1375005) Lactobacillus reuteri DSM 20016 5189965