-- dump date 20240506_001631 -- class Genbank::Contig -- table contig_comment -- id comment NC_013203.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001721.1.REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: ProdigalREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavityREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiensREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: OralREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevicesREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45CREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microfloraREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4 Pseudo Genes (internal stop) :: 0 of 4REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4 Pseudo Genes (internal stop) :: 0 of 4 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001721.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083308 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Atopobium parvulum IPP 1246, DSM 20469 Culture Collection ID :: DSM 20469, ATCC 33793, JCM 10300 GOLD Stamp ID :: Gi02317 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Gingival crevices of the human oral cavity Collection Date :: before 1937 Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Gingival crevices Oxygen Requirement :: Obligate anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37 - 45C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Human airways, Oral microflora ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:13:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,408 CDSs (total) :: 1,357 Genes (coding) :: 1,353 CDSs (with protein) :: 1,353 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4 Pseudo Genes (internal stop) :: 0 of 4 ##Genome-Annotation-Data-END## COMPLETENESS: full length.