-- dump date 20140619_130712 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_061214.1 50953926 2938735 225..1646 1 NC_006087.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 1646 dnaA 2938735 dnaA Leifsonia xyli subsp. xyli str. CTCB07 chromosome replication initiator DnaA YP_061214.1 225 D 281090 CDS YP_061215.1 50953927 2938305 2083..3228 1 NC_006087.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3228 dnaN 2938305 dnaN Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase III subunit beta YP_061215.1 2083 D 281090 CDS YP_061216.1 50953928 2940065 3266..4153 1 NC_006087.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 4153 gnd 2940065 gnd Leifsonia xyli subsp. xyli str. CTCB07 6-phosphogluconate dehydrogenase YP_061216.1 3266 D 281090 CDS YP_061217.1 50953929 2938609 4160..5317 1 NC_006087.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 5317 recF 2938609 recF Leifsonia xyli subsp. xyli str. CTCB07 recombination protein F YP_061217.1 4160 D 281090 CDS YP_061218.1 50953930 2939456 5314..5790 1 NC_006087.1 identified by sequence similarity; hypothetical protein 5790 2939456 Lxx00050 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061218.1 5314 D 281090 CDS YP_061219.1 50953931 2939052 5914..7905 1 NC_006087.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 7905 gyrB 2939052 gyrB Leifsonia xyli subsp. xyli str. CTCB07 DNA gyrase subunit B YP_061219.1 5914 D 281090 CDS YP_061220.1 50953932 2938465 7949..10525 1 NC_006087.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 10525 gyrA 2938465 gyrA Leifsonia xyli subsp. xyli str. CTCB07 DNA gyrase subunit A YP_061220.1 7949 D 281090 CDS YP_061221.1 50953933 2938431 10515..10928 1 NC_006087.1 identified by sequence similarity; hypothetical protein 10928 2938431 Lxx00080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061221.1 10515 D 281090 CDS YP_061222.1 50953934 2940265 complement(13624..14487) 1 NC_006087.1 identified by sequence similarity; formamidopyrimidine-DNA glycosylase 14487 mutM 2940265 mutM Leifsonia xyli subsp. xyli str. CTCB07 formamidopyrimidine-DNA glycosylase YP_061222.1 13624 R 281090 CDS YP_061223.1 50953935 2940170 14528..14959 1 NC_006087.1 identified by sequence similarity; MutT-like domain-containing protein 14959 2940170 Lxx00130 Leifsonia xyli subsp. xyli str. CTCB07 MutT-like domain-containing protein YP_061223.1 14528 D 281090 CDS YP_061224.1 50953936 2939899 complement(15163..15465) 1 NC_006087.1 hypothetical protein 15465 2939899 Lxx00150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061224.1 15163 R 281090 CDS YP_061225.1 50953937 2938629 15843..16382 1 NC_006087.1 identified by sequence similarity; peptidyl-prolyl cis-trans isomerase 16382 ppiB 2938629 ppiB Leifsonia xyli subsp. xyli str. CTCB07 peptidyl-prolyl cis-trans isomerase YP_061225.1 15843 D 281090 CDS YP_061226.1 50953938 2939416 16406..17263 1 NC_006087.1 identified by sequence similarity; rhomboid family membrane protein 17263 yggP 2939416 yggP Leifsonia xyli subsp. xyli str. CTCB07 rhomboid family membrane protein YP_061226.1 16406 D 281090 CDS YP_061227.1 50953939 2939477 complement(17482..17742) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 17742 whiP 2939477 whiP Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061227.1 17482 R 281090 CDS YP_061228.1 50953940 2938756 17919..18668 1 NC_006087.1 identified by sequence similarity; hypothetical protein 18668 2938756 Lxx00190 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061228.1 17919 D 281090 CDS YP_061229.1 50953941 2939427 18828..19466 1 NC_006087.1 identified by sequence similarity; anthranilate synthase component II 19466 trpG 2939427 trpG Leifsonia xyli subsp. xyli str. CTCB07 anthranilate synthase component II YP_061229.1 18828 D 281090 CDS YP_061230.1 50953942 2938776 complement(19497..21194) 1 NC_006087.1 identified by sequence similarity; serine/threonine kinase 21194 pknB 2938776 pknB Leifsonia xyli subsp. xyli str. CTCB07 serine/threonine kinase YP_061230.1 19497 R 281090 CDS YP_061231.1 50953943 2939031 complement(21267..22988) 1 NC_006087.1 identified by sequence similarity; serine/threonine kinase 22988 pknA 2939031 pknA Leifsonia xyli subsp. xyli str. CTCB07 serine/threonine kinase YP_061231.1 21267 R 281090 CDS YP_061232.1 50953944 2939166 complement(22985..24406) 1 NC_006087.1 identified by sequence similarity; penicillin binding protein transpeptidase domain-containing protein 24406 2939166 Lxx00230 Leifsonia xyli subsp. xyli str. CTCB07 penicillin binding protein transpeptidase domain-containing protein YP_061232.1 22985 R 281090 CDS YP_061233.1 50953945 2940302 complement(24441..25820) 1 NC_006087.1 identified by sequence similarity; cell division membrane protein 25820 ftsW 2940302 ftsW Leifsonia xyli subsp. xyli str. CTCB07 cell division membrane protein YP_061233.1 24441 R 281090 CDS YP_061234.1 50953946 2939180 complement(25822..27066) 1 NC_006087.1 identified by sequence similarity; protein phosphatase 27066 2939180 Lxx00250 Leifsonia xyli subsp. xyli str. CTCB07 protein phosphatase YP_061234.1 25822 R 281090 CDS YP_061235.1 50953947 2939976 complement(27070..27627) 1 NC_006087.1 identified by sequence similarity; secreted protein 27627 2939976 Lxx00260 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_061235.1 27070 R 281090 CDS YP_061236.1 50953948 2939158 complement(27624..28337) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 28337 2939158 Lxx00270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061236.1 27624 R 281090 CDS YP_061237.1 50953949 2938597 29067..29405 1 NC_006087.1 identified by sequence similarity; hypothetical protein 29405 2938597 Lxx00290 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061237.1 29067 D 281090 CDS YP_061238.1 50953950 2938943 complement(30026..30745) 1 NC_006087.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 30745 aroE 2938943 aroE Leifsonia xyli subsp. xyli str. CTCB07 shikimate 5-dehydrogenase YP_061238.1 30026 R 281090 CDS YP_061239.1 50953951 2938340 31125..32672 1 NC_006087.1 identified by sequence similarity; multiple sugar transporter 32672 2938340 Lxx00320 Leifsonia xyli subsp. xyli str. CTCB07 multiple sugar transporter YP_061239.1 31125 D 281090 CDS YP_061240.1 50953952 2939978 32675..34024 1 NC_006087.1 identified by sequence similarity; L-arabinose ABC transporter permease 34024 araH 2939978 araH Leifsonia xyli subsp. xyli str. CTCB07 L-arabinose ABC transporter permease YP_061240.1 32675 D 281090 CDS YP_061241.1 50953953 2939072 34092..35162 1 NC_006087.1 identified by sequence similarity; multiple sugar-binding periplasmic receptor 35162 2939072 Lxx00340 Leifsonia xyli subsp. xyli str. CTCB07 multiple sugar-binding periplasmic receptor YP_061241.1 34092 D 281090 CDS YP_061242.1 50953954 2938998 37296..38450 1 NC_006087.1 identified by sequence similarity; DNA-binding helix-turn-helix protein 38450 2938998 Lxx00370 Leifsonia xyli subsp. xyli str. CTCB07 DNA-binding helix-turn-helix protein YP_061242.1 37296 D 281090 CDS YP_061243.1 50953955 2938464 39767..40810 1 NC_006087.1 identified by sequence similarity; secreted hydrolase 40810 2938464 Lxx00380 Leifsonia xyli subsp. xyli str. CTCB07 secreted hydrolase YP_061243.1 39767 D 281090 CDS YP_061244.1 50953956 2938898 complement(41320..41652) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 41652 5 2938898 5 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061244.1 41320 R 281090 CDS YP_061245.1 50953957 2940542 complement(41660..42607) 1 NC_006087.1 identified by sequence similarity; phage-related lysozyme 42607 lysL 2940542 lysL Leifsonia xyli subsp. xyli str. CTCB07 phage-related lysozyme YP_061245.1 41660 R 281090 CDS YP_061246.1 50953958 2938707 complement(43317..43583) 1 NC_006087.1 hypothetical protein 43583 2938707 Lxx00410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061246.1 43317 R 281090 CDS YP_061247.1 50953959 2938725 43717..44178 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx4 44178 tnp 2938725 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx4 YP_061247.1 43717 D 281090 CDS YP_061248.1 50953960 2939063 46023..46373 1 NC_006087.1 identified by sequence similarity; MutT-like domain-containing protein 46373 mut 2939063 mut Leifsonia xyli subsp. xyli str. CTCB07 MutT-like domain-containing protein YP_061248.1 46023 D 281090 CDS YP_061249.1 50953961 2939790 complement(46604..47908) 1 NC_006087.1 identified by sequence similarity; phage-related integrase 47908 2939790 Lxx00450 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_061249.1 46604 R 281090 CDS YP_061250.1 50953962 2938920 complement(48277..48990) 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 48990 2938920 Lxx00460 Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_061250.1 48277 R 281090 CDS YP_061251.1 50953963 2939277 49110..49751 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 49751 2939277 Lxx00470 Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_061251.1 49110 D 281090 CDS YP_061252.1 50953964 2939524 complement(49911..51044) 1 NC_006087.1 identified by sequence similarity; serine protease 51044 2939524 Lxx00490 Leifsonia xyli subsp. xyli str. CTCB07 serine protease YP_061252.1 49911 R 281090 CDS YP_061253.1 50953965 2939334 complement(51177..51731) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 51731 2939334 Lxx00500 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061253.1 51177 R 281090 CDS YP_061254.1 50953966 2938475 51946..53229 1 NC_006087.1 identified by sequence similarity; ROK family transcriptional regulator 53229 2938475 Lxx00510 Leifsonia xyli subsp. xyli str. CTCB07 ROK family transcriptional regulator YP_061254.1 51946 D 281090 CDS YP_061255.1 50953967 2939101 54720..55652 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 55652 2939101 Lxx00540 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061255.1 54720 D 281090 CDS YP_061256.1 50953968 2939322 55649..56485 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 56485 2939322 Lxx00550 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061256.1 55649 D 281090 CDS YP_061257.1 50953969 2939208 57113..58324 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 58324 tnp 2939208 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_061257.1 57113 D 281090 CDS YP_061258.1 50953970 2938700 60277..60648 1 NC_006087.1 hypothetical protein 60648 2938700 Lxx00600 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061258.1 60277 D 281090 CDS YP_061259.1 50953971 2939285 61552..62598 1 NC_006087.1 identified by sequence similarity; 2-dehydro-3-deoxygluconokinase 62598 kdgK 2939285 kdgK Leifsonia xyli subsp. xyli str. CTCB07 2-dehydro-3-deoxygluconokinase YP_061259.1 61552 D 281090 CDS YP_061260.1 50953972 2938328 62595..63383 1 NC_006087.1 identified by sequence similarity; IclR family transcriptional regulator 63383 2938328 Lxx00620 Leifsonia xyli subsp. xyli str. CTCB07 IclR family transcriptional regulator YP_061260.1 62595 D 281090 CDS YP_061261.1 50953973 2938600 63395..63799 1 NC_006087.1 identified by sequence similarity; protein synthesis inhibitor 63799 2938600 Lxx00630 Leifsonia xyli subsp. xyli str. CTCB07 protein synthesis inhibitor YP_061261.1 63395 D 281090 CDS YP_061262.1 50953974 2940584 65549..66595 1 NC_006087.1 identified by sequence similarity; oxidoreductase 66595 2940584 Lxx00640 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_061262.1 65549 D 281090 CDS YP_061263.1 50953975 2938795 66911..67027 1 NC_006087.1 hypothetical protein 67027 2938795 Lxx00660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061263.1 66911 D 281090 CDS YP_061264.1 50953976 2939610 67113..67583 1 NC_006087.1 hypothetical protein 67583 2939610 Lxx00670 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061264.1 67113 D 281090 CDS YP_061265.1 50953977 2938927 complement(67552..67965) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 67965 crcB 2938927 crcB Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061265.1 67552 R 281090 CDS YP_061266.1 50953978 2940218 complement(67962..68399) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 68399 crcB 2940218 crcB Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061266.1 67962 R 281090 CDS YP_061267.1 50953979 2939182 complement(68492..69034) 1 NC_006087.1 hypothetical protein 69034 2939182 Lxx00710 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061267.1 68492 R 281090 CDS YP_061268.1 50953980 2939352 69024..69770 1 NC_006087.1 identified by sequence similarity; hypothetical protein 69770 2939352 Lxx00700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061268.1 69024 D 281090 CDS YP_061269.1 50953981 2940296 69767..70813 1 NC_006087.1 identified by sequence similarity; hypothetical protein 70813 2940296 Lxx00730 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061269.1 69767 D 281090 CDS YP_061270.1 50953982 2938430 complement(70810..71991) 1 NC_006087.1 hypothetical protein 71991 2938430 Lxx00740 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061270.1 70810 R 281090 CDS YP_061271.1 50953983 2939816 complement(72235..73395) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 73395 2939816 Lxx00750 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_061271.1 72235 R 281090 CDS YP_061272.1 50953984 2939134 complement(73920..74543) 1 NC_006087.1 identified by sequence similarity; two-component system response regulator 74543 2939134 Lxx00760 Leifsonia xyli subsp. xyli str. CTCB07 two-component system response regulator YP_061272.1 73920 R 281090 CDS YP_061273.1 50953985 2938322 complement(75783..76934) 1 NC_006087.1 identified by sequence similarity; mannitol-1-phosphate 5-dehydrogenase 76934 mtlD 2938322 mtlD Leifsonia xyli subsp. xyli str. CTCB07 mannitol-1-phosphate 5-dehydrogenase YP_061273.1 75783 R 281090 CDS YP_061274.1 50953986 2940145 complement(76947..77384) 1 NC_006087.1 identified by sequence similarity; PTS system, mannitol-specific enzyme II, A component 77384 2940145 Lxx00810 Leifsonia xyli subsp. xyli str. CTCB07 PTS system, mannitol-specific enzyme II, A component YP_061274.1 76947 R 281090 CDS YP_061275.1 50953987 2938467 complement(77381..78895) 1 NC_006087.1 identified by sequence similarity; PTS system, mannitol-specific IIBC component 78895 EIIBC-Mtl 2938467 EIIBC-Mtl Leifsonia xyli subsp. xyli str. CTCB07 PTS system, mannitol-specific IIBC component YP_061275.1 77381 R 281090 CDS YP_061276.1 50953988 2939047 complement(78892..80538) 1 NC_006087.1 identified by sequence similarity; PTS system, enzyme I 80538 ptsI 2939047 ptsI Leifsonia xyli subsp. xyli str. CTCB07 PTS system, enzyme I YP_061276.1 78892 R 281090 CDS YP_061277.1 50953989 2938992 complement(80598..80864) 1 NC_006087.1 identified by sequence similarity; phosphocarrier protein HPr 80864 ptsH 2938992 ptsH Leifsonia xyli subsp. xyli str. CTCB07 phosphocarrier protein HPr YP_061277.1 80598 R 281090 CDS YP_061278.1 50953990 2939018 complement(80857..81213) 1 NC_006087.1 identified by sequence similarity; PTS system, IIB component 81213 2939018 Lxx00850 Leifsonia xyli subsp. xyli str. CTCB07 PTS system, IIB component YP_061278.1 80857 R 281090 CDS YP_061279.1 50953991 2938284 84065..85180 1 NC_006087.1 identified by sequence similarity; acetyltransferase 85180 2938284 Lxx00880 Leifsonia xyli subsp. xyli str. CTCB07 acetyltransferase YP_061279.1 84065 D 281090 CDS YP_061280.1 50953992 2938833 85621..87519 1 NC_006087.1 identified by sequence similarity; BigG family transcription antiterminator 87519 2938833 Lxx00900 Leifsonia xyli subsp. xyli str. CTCB07 BigG family transcription antiterminator YP_061280.1 85621 D 281090 CDS YP_061281.1 50953993 2938881 complement(87549..88247) 1 NC_006087.1 identified by sequence similarity; HAD superfamily hydrolase 88247 2938881 Lxx00910 Leifsonia xyli subsp. xyli str. CTCB07 HAD superfamily hydrolase YP_061281.1 87549 R 281090 CDS YP_061282.1 50953994 2940077 complement(88285..88704) 1 NC_006087.1 hypothetical protein 88704 2940077 Lxx00920 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061282.1 88285 R 281090 CDS YP_061283.1 50953995 2938640 complement(88704..89399) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 89399 2938640 Lxx00930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061283.1 88704 R 281090 CDS YP_061284.1 50953996 2939145 89414..90487 1 NC_006087.1 identified by sequence similarity; secreted protein 90487 2939145 Lxx00940 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_061284.1 89414 D 281090 CDS YP_061285.1 50953997 2940465 complement(90531..91160) 1 NC_006087.1 hypothetical protein 91160 2940465 Lxx00950 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061285.1 90531 R 281090 CDS YP_061286.1 50953998 2938313 complement(92167..93552) 1 NC_006087.1 identified by sequence similarity; DNA-damage-inducible protein F 93552 dinF 2938313 dinF Leifsonia xyli subsp. xyli str. CTCB07 DNA-damage-inducible protein F YP_061286.1 92167 R 281090 CDS YP_061287.1 50953999 2938677 93566..94297 1 NC_006087.1 hypothetical protein 94297 2938677 Lxx00970 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061287.1 93566 D 281090 CDS YP_061288.1 50954000 2940236 94294..94611 1 NC_006087.1 hypothetical protein 94611 2940236 Lxx00980 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061288.1 94294 D 281090 CDS YP_061289.1 50954001 2939029 95288..95512 1 NC_006087.1 hypothetical protein 95512 2939029 Lxx00990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061289.1 95288 D 281090 CDS YP_061290.1 50954002 2939049 95597..96193 1 NC_006087.1 hypothetical protein 96193 2939049 Lxx01000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061290.1 95597 D 281090 CDS YP_061291.1 50954003 2938989 96210..98165 1 NC_006087.1 identified by sequence similarity; metallopeptidase 98165 2938989 Lxx01010 Leifsonia xyli subsp. xyli str. CTCB07 metallopeptidase YP_061291.1 96210 D 281090 CDS YP_061292.1 50954004 2940410 98366..99202 1 NC_006087.1 identified by sequence similarity; beta-lactamase-like protein 99202 2940410 Lxx01020 Leifsonia xyli subsp. xyli str. CTCB07 beta-lactamase-like protein YP_061292.1 98366 D 281090 CDS YP_061293.1 50954005 2939490 complement(99376..100767) 1 NC_006087.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 100767 glyS 2939490 glyS Leifsonia xyli subsp. xyli str. CTCB07 glycyl-tRNA synthetase YP_061293.1 99376 R 281090 CDS YP_061294.1 50954006 2938311 complement(100844..102142) 1 NC_006087.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 102142 hemA 2938311 hemA Leifsonia xyli subsp. xyli str. CTCB07 glutamyl-tRNA reductase YP_061294.1 100844 R 281090 CDS YP_061295.1 50954007 2940152 102252..103385 1 NC_006087.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 103385 hemE 2940152 hemE Leifsonia xyli subsp. xyli str. CTCB07 uroporphyrinogen decarboxylase YP_061295.1 102252 D 281090 CDS YP_061296.1 50954008 2939103 103382..105214 1 NC_006087.1 identified by sequence similarity; protoporphyrinogen oxidase 105214 hemG 2939103 hemG Leifsonia xyli subsp. xyli str. CTCB07 protoporphyrinogen oxidase YP_061296.1 103382 D 281090 CDS YP_061297.1 50954009 2938592 105650..105865 1 NC_006087.1 hypothetical protein 105865 2938592 Lxx01080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061297.1 105650 D 281090 CDS YP_061298.1 50954010 2938895 106682..107851 1 NC_006087.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 107851 hemH 2938895 hemH Leifsonia xyli subsp. xyli str. CTCB07 ferrochelatase YP_061298.1 106682 D 281090 CDS YP_061299.1 50954011 2938373 107848..108837 1 NC_006087.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 108837 hemC 2938373 hemC Leifsonia xyli subsp. xyli str. CTCB07 porphobilinogen deaminase YP_061299.1 107848 D 281090 CDS YP_061300.1 50954012 2939329 108834..109616 1 NC_006087.1 identified by sequence similarity; uroporphyrinogen-III synthase 109616 hemD 2939329 hemD Leifsonia xyli subsp. xyli str. CTCB07 uroporphyrinogen-III synthase YP_061300.1 108834 D 281090 CDS YP_061301.1 50954013 2939123 109644..110624 1 NC_006087.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 110624 hemB 2939123 hemB Leifsonia xyli subsp. xyli str. CTCB07 delta-aminolevulinic acid dehydratase YP_061301.1 109644 D 281090 CDS YP_061302.1 50954014 2940479 110645..111988 1 NC_006087.1 identified by sequence similarity; glutamate-1-semialdehyde 2,1-aminomutase 111988 hemL 2940479 hemL Leifsonia xyli subsp. xyli str. CTCB07 glutamate-1-semialdehyde 2,1-aminomutase YP_061302.1 110645 D 281090 CDS YP_061303.1 50954015 2938246 112143..112751 1 NC_006087.1 hypothetical protein 112751 2938246 Lxx01140 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061303.1 112143 D 281090 CDS YP_061304.1 50954016 2939658 113470..114183 1 NC_006087.1 hypothetical protein 114183 2939658 Lxx01150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061304.1 113470 D 281090 CDS YP_061305.1 50954017 2938995 114224..114649 1 NC_006087.1 hypothetical protein 114649 2938995 Lxx01160 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061305.1 114224 D 281090 CDS YP_061306.1 50954018 2939788 complement(116688..117068) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 117068 2939788 Lxx01180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061306.1 116688 R 281090 CDS YP_061307.1 50954019 2939330 complement(117132..118154) 1 NC_006087.1 identified by sequence similarity; alcohol dehydrogenase 118154 adhT 2939330 adhT Leifsonia xyli subsp. xyli str. CTCB07 alcohol dehydrogenase YP_061307.1 117132 R 281090 CDS YP_061308.1 50954020 2939053 118621..119262 1 NC_006087.1 identified by sequence similarity; hypothetical protein 119262 2939053 Lxx01200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061308.1 118621 D 281090 CDS YP_061309.1 50954021 2939066 119326..119421 1 NC_006087.1 hypothetical protein 119421 2939066 Lxx01210 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061309.1 119326 D 281090 CDS YP_061310.1 50954022 2939187 119421..119900 1 NC_006087.1 hypothetical protein 119900 2939187 Lxx01220 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061310.1 119421 D 281090 CDS YP_061311.1 50954023 2939321 120874..121749 1 NC_006087.1 identified by sequence similarity; glycosyltransferase 121749 2939321 Lxx01230 Leifsonia xyli subsp. xyli str. CTCB07 glycosyltransferase YP_061311.1 120874 D 281090 CDS YP_061312.1 50954024 2940103 121753..122289 1 NC_006087.1 identified by sequence similarity; hypothetical protein 122289 2940103 Lxx01250 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061312.1 121753 D 281090 CDS YP_061313.1 50954025 2938618 123941..124840 1 NC_006087.1 identified by sequence similarity; phosphonomutase 124840 prpB 2938618 prpB Leifsonia xyli subsp. xyli str. CTCB07 phosphonomutase YP_061313.1 123941 D 281090 CDS YP_061314.1 50954026 2938496 complement(126892..128169) 1 NC_006087.1 identified by sequence similarity; aspartyl-tRNA synthetase 128169 aspS 2938496 aspS Leifsonia xyli subsp. xyli str. CTCB07 aspartyl-tRNA synthetase YP_061314.1 126892 R 281090 CDS YP_061315.1 50954027 2939269 128327..129016 1 NC_006087.1 identified by sequence similarity; phosphoglycerate mutase 129016 gpm 2939269 gpm Leifsonia xyli subsp. xyli str. CTCB07 phosphoglycerate mutase YP_061315.1 128327 D 281090 CDS YP_061316.1 50954028 2940460 129013..129618 1 NC_006087.1 identified by sequence similarity; thiol:disulfide interchange protein 129618 dsbE 2940460 dsbE Leifsonia xyli subsp. xyli str. CTCB07 thiol:disulfide interchange protein YP_061316.1 129013 D 281090 CDS YP_061317.1 50954029 2938285 129620..130357 1 NC_006087.1 identified by sequence similarity; cytochrome C-type biogenesis protein 130357 ccdA 2938285 ccdA Leifsonia xyli subsp. xyli str. CTCB07 cytochrome C-type biogenesis protein YP_061317.1 129620 D 281090 CDS YP_061318.1 50954030 2940128 130341..131963 1 NC_006087.1 identified by sequence similarity; cytochrome C biosynthesis associated protein 131963 resB 2940128 resB Leifsonia xyli subsp. xyli str. CTCB07 cytochrome C biosynthesis associated protein YP_061318.1 130341 D 281090 CDS YP_061319.1 50954031 2939679 132162..133067 1 NC_006087.1 identified by sequence similarity; cytochrome C assembly protein 133067 ccsA 2939679 ccsA Leifsonia xyli subsp. xyli str. CTCB07 cytochrome C assembly protein YP_061319.1 132162 D 281090 CDS YP_061320.1 50954032 2939731 139277..140953 1 NC_006087.1 identified by sequence similarity; hypothetical protein 140953 2939731 Lxx01410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061320.1 139277 D 281090 CDS YP_061321.1 50954033 2938615 140937..141950 1 NC_006087.1 identified by sequence similarity; 4-nitrophenylphosphatase 141950 2938615 Lxx01420 Leifsonia xyli subsp. xyli str. CTCB07 4-nitrophenylphosphatase YP_061321.1 140937 D 281090 CDS YP_061322.1 50954034 2939046 complement(141955..142947) 1 NC_006087.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 142947 menC 2939046 menC Leifsonia xyli subsp. xyli str. CTCB07 O-succinylbenzoate synthase YP_061322.1 141955 R 281090 CDS YP_061323.1 50954035 2938606 143004..143915 1 NC_006087.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 143915 menB 2938606 menB Leifsonia xyli subsp. xyli str. CTCB07 naphthoate synthase YP_061323.1 143004 D 281090 CDS YP_061324.1 50954036 2939863 143928..145181 1 NC_006087.1 identified by sequence similarity; O-succinylbenzoate-CoA ligase 145181 menE 2939863 menE Leifsonia xyli subsp. xyli str. CTCB07 O-succinylbenzoate-CoA ligase YP_061324.1 143928 D 281090 CDS YP_061325.1 50954037 2938542 145307..146191 1 NC_006087.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 146191 menA 2938542 menA Leifsonia xyli subsp. xyli str. CTCB07 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_061325.1 145307 D 281090 CDS YP_061326.1 50954038 2939045 complement(146263..146586) 1 NC_006087.1 hypothetical protein 146586 2939045 Lxx01470 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061326.1 146263 R 281090 CDS YP_061327.1 50954039 2938367 146629..146985 1 NC_006087.1 identified by sequence similarity; hypothetical protein 146985 2938367 Lxx01480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061327.1 146629 D 281090 CDS YP_061328.1 50954040 2938844 146978..148756 1 NC_006087.1 identified by sequence similarity; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; 2-oxoglutarate decarboxylase 148756 menD 2938844 menD Leifsonia xyli subsp. xyli str. CTCB07 2-oxoglutarate decarboxylase YP_061328.1 146978 D 281090 CDS YP_061329.1 50954041 2939703 148962..149885 1 NC_006087.1 identified by sequence similarity; phage-related integrase 149885 2939703 Lxx01500 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_061329.1 148962 D 281090 CDS YP_061330.1 50954042 2939197 150188..151045 1 NC_006087.1 identified by sequence similarity; DNA methyltransferase 151045 xbaIM 2939197 xbaIM Leifsonia xyli subsp. xyli str. CTCB07 DNA methyltransferase YP_061330.1 150188 D 281090 CDS YP_061331.1 50954043 2939132 151081..151923 1 NC_006087.1 identified by sequence similarity; hypothetical protein 151923 2939132 Lxx01530 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061331.1 151081 D 281090 CDS YP_061332.1 50954044 2939146 151994..153379 1 NC_006087.1 identified by sequence similarity; Na+/H+ antiporter 153379 2939146 Lxx01540 Leifsonia xyli subsp. xyli str. CTCB07 Na+/H+ antiporter YP_061332.1 151994 D 281090 CDS YP_061333.1 50954045 2940515 156036..156497 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx4 156497 tnp 2940515 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx4 YP_061333.1 156036 D 281090 CDS YP_061334.1 50954046 2940319 complement(157358..158242) 1 NC_006087.1 identified by sequence similarity; fructokinase 158242 scrK 2940319 scrK Leifsonia xyli subsp. xyli str. CTCB07 fructokinase YP_061334.1 157358 R 281090 CDS YP_061335.1 50954047 2938505 complement(162235..162936) 1 NC_006087.1 identified by sequence similarity; transcriptional regulator 162936 2938505 Lxx01640 Leifsonia xyli subsp. xyli str. CTCB07 transcriptional regulator YP_061335.1 162235 R 281090 CDS YP_061336.1 50954048 2939749 complement(163344..163976) 1 NC_006087.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 163976 upp 2939749 upp Leifsonia xyli subsp. xyli str. CTCB07 uracil phosphoribosyltransferase YP_061336.1 163344 R 281090 CDS YP_061337.1 50954049 2940057 164051..164482 1 NC_006087.1 identified by sequence similarity; cytosine/adenosine deaminase 164482 2940057 Lxx01660 Leifsonia xyli subsp. xyli str. CTCB07 cytosine/adenosine deaminase YP_061337.1 164051 D 281090 CDS YP_061338.1 50954050 2940484 complement(164847..165659) 1 NC_006087.1 hypothetical protein 165659 2940484 Lxx01680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061338.1 164847 R 281090 CDS YP_061339.1 50954051 2939051 complement(165822..165974) 1 NC_006087.1 hypothetical protein 165974 2939051 Lxx01690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061339.1 165822 R 281090 CDS YP_061340.1 50954052 2938804 complement(166133..166438) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 166438 2938804 Lxx01700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061340.1 166133 R 281090 CDS YP_061341.1 50954053 2939015 complement(166435..167397) 1 NC_006087.1 identified by sequence similarity; cation transporter 167397 2939015 Lxx01710 Leifsonia xyli subsp. xyli str. CTCB07 cation transporter YP_061341.1 166435 R 281090 CDS YP_061342.1 50954054 2939266 167459..168268 1 NC_006087.1 identified by sequence similarity; pyrroline-5-carboxylate reductase 168268 proC 2939266 proC Leifsonia xyli subsp. xyli str. CTCB07 pyrroline-5-carboxylate reductase YP_061342.1 167459 D 281090 CDS YP_061343.1 50954055 2939341 complement(169145..169816) 1 NC_006087.1 identified by sequence similarity; potassium uptake protein 169816 trkA 2939341 trkA Leifsonia xyli subsp. xyli str. CTCB07 potassium uptake protein YP_061343.1 169145 R 281090 CDS YP_061344.1 50954056 2938887 complement(169809..171203) 1 NC_006087.1 identified by sequence similarity; potassium uptake protein 171203 trkH 2938887 trkH Leifsonia xyli subsp. xyli str. CTCB07 potassium uptake protein YP_061344.1 169809 R 281090 CDS YP_061345.1 50954057 2938761 171313..171735 1 NC_006087.1 identified by sequence similarity; ArsR family transcriptional regulator 171735 arsR 2938761 arsR Leifsonia xyli subsp. xyli str. CTCB07 ArsR family transcriptional regulator YP_061345.1 171313 D 281090 CDS YP_061346.1 50954058 2940150 171831..172040 1 NC_006087.1 identified by sequence similarity; excisionase 172040 2940150 Lxx01760 Leifsonia xyli subsp. xyli str. CTCB07 excisionase YP_061346.1 171831 D 281090 CDS YP_061347.1 50954059 2938950 172325..172594 1 NC_006087.1 identified by sequence similarity; redoxin 172594 2938950 Lxx01770 Leifsonia xyli subsp. xyli str. CTCB07 redoxin YP_061347.1 172325 D 281090 CDS YP_061348.1 50954060 2939845 172591..172893 1 NC_006087.1 identified by sequence similarity; hypothetical protein 172893 2939845 Lxx01780 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061348.1 172591 D 281090 CDS YP_061349.1 50954061 2938778 complement(172964..173653) 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 173653 gntR 2938778 gntR Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_061349.1 172964 R 281090 CDS YP_061350.1 50954062 2938620 complement(173665..174339) 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 174339 gntR 2938620 gntR Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_061350.1 173665 R 281090 CDS YP_061351.1 50954063 2939082 complement(174841..176115) 1 NC_006087.1 identified by sequence similarity; isochorismate mutase 176115 menF 2939082 menF Leifsonia xyli subsp. xyli str. CTCB07 isochorismate mutase YP_061351.1 174841 R 281090 CDS YP_061352.1 50954064 2938603 176260..177357 1 NC_006087.1 catalyzes the formation of menaquinol or 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol from S-adenosyl-L-methionine and demethylmenaquinol or 2-polyprenyl-6-methoxy-1,4-benzoquinol; ubiquinone/menaquinone biosynthesis methyltransferase 177357 ubiE 2938603 ubiE Leifsonia xyli subsp. xyli str. CTCB07 ubiquinone/menaquinone biosynthesis methyltransferase YP_061352.1 176260 D 281090 CDS YP_061353.1 50954065 2939393 177375..178436 1 NC_006087.1 identified by sequence similarity; trans-hexaprenyltranstransferase 178436 hepB 2939393 hepB Leifsonia xyli subsp. xyli str. CTCB07 trans-hexaprenyltranstransferase YP_061353.1 177375 D 281090 CDS YP_061354.1 50954066 2940005 178455..179825 1 NC_006087.1 identified by sequence similarity; ferredoxin/ferredoxin-NADP reductase 179825 frp 2940005 frp Leifsonia xyli subsp. xyli str. CTCB07 ferredoxin/ferredoxin-NADP reductase YP_061354.1 178455 D 281090 CDS YP_061355.1 50954067 2939880 complement(182471..182917) 1 NC_006087.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 182917 2939880 Lxx01880 Leifsonia xyli subsp. xyli str. CTCB07 nucleotide-binding protein YP_061355.1 182471 R 281090 CDS YP_061356.1 50954068 2939306 188236..190275 1 NC_006087.1 identified by sequence similarity; acetyltransferase 190275 2939306 Lxx01930 Leifsonia xyli subsp. xyli str. CTCB07 acetyltransferase YP_061356.1 188236 D 281090 CDS YP_061357.1 50954069 2939428 190687..191265 1 NC_006087.1 hypothetical protein 191265 2939428 Lxx01940 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061357.1 190687 D 281090 CDS YP_061358.1 50954070 2939039 191262..191387 1 NC_006087.1 hypothetical protein 191387 2939039 Lxx01950 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061358.1 191262 D 281090 CDS YP_061359.1 50954071 2940430 192255..192611 1 NC_006087.1 hypothetical protein 192611 2940430 Lxx01970 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061359.1 192255 D 281090 CDS YP_061360.1 50954072 2940597 192608..193273 1 NC_006087.1 hypothetical protein 193273 2940597 Lxx01980 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061360.1 192608 D 281090 CDS YP_061361.1 50954073 2938860 193961..194074 1 NC_006087.1 hypothetical protein 194074 2938860 Lxx01990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061361.1 193961 D 281090 CDS YP_061362.1 50954074 2939135 194200..194265 1 NC_006087.1 hypothetical protein 194265 2939135 Lxx02000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061362.1 194200 D 281090 CDS YP_061363.1 50954075 2939537 complement(195480..196355) 1 NC_006087.1 hypothetical protein 196355 2939537 Lxx02020 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061363.1 195480 R 281090 CDS YP_061364.1 50954076 2939834 196797..197480 1 NC_006087.1 identified by sequence similarity; inositol monophosphatase 197480 suhB 2939834 suhB Leifsonia xyli subsp. xyli str. CTCB07 inositol monophosphatase YP_061364.1 196797 D 281090 CDS YP_061365.1 50954077 2939474 complement(198580..200076) 1 NC_006087.1 identified by sequence similarity; dolichyl-phosphate mannose synthase 200076 2939474 Lxx02040 Leifsonia xyli subsp. xyli str. CTCB07 dolichyl-phosphate mannose synthase YP_061365.1 198580 R 281090 CDS YP_061366.1 50954078 2940422 complement(200073..202058) 1 NC_006087.1 hypothetical protein 202058 2940422 Lxx02050 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061366.1 200073 R 281090 CDS YP_061367.1 50954079 2938422 complement(202209..202781) 1 NC_006087.1 identified by sequence similarity; hydrolase 202781 2938422 Lxx02060 Leifsonia xyli subsp. xyli str. CTCB07 hydrolase YP_061367.1 202209 R 281090 CDS YP_061368.1 50954080 2939095 complement(202859..203245) 1 NC_006087.1 hypothetical protein 203245 2939095 Lxx02070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061368.1 202859 R 281090 CDS YP_061369.1 50954081 2940381 203671..204117 1 NC_006087.1 identified by sequence similarity; MarR family transcriptional regulator 204117 2940381 Lxx02080 Leifsonia xyli subsp. xyli str. CTCB07 MarR family transcriptional regulator YP_061369.1 203671 D 281090 CDS YP_061370.1 50954082 2939270 204175..206487 1 NC_006087.1 identified by sequence similarity; penicillin-binding protein 206487 ponA 2939270 ponA Leifsonia xyli subsp. xyli str. CTCB07 penicillin-binding protein YP_061370.1 204175 D 281090 CDS YP_061371.1 50954083 2938873 206573..207166 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 207166 2938873 Lxx02100 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_061371.1 206573 D 281090 CDS YP_061372.1 50954084 2938832 207416..209572 1 NC_006087.1 identified by sequence similarity; oligopeptidase B 209572 ptrB 2938832 ptrB Leifsonia xyli subsp. xyli str. CTCB07 oligopeptidase B YP_061372.1 207416 D 281090 CDS YP_061373.1 50954085 2938858 complement(210003..211859) 1 NC_006087.1 identified by sequence similarity; ABC transporter NBP/MSD fusion protein (pimaricin) 211859 pimB 2938858 pimB Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter NBP/MSD fusion protein (pimaricin) YP_061373.1 210003 R 281090 CDS YP_061374.1 50954086 2939259 complement(211984..213714) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 213714 pimA 2939259 pimA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_061374.1 211984 R 281090 CDS YP_061375.1 50954087 2938812 complement(213852..214391) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 214391 2938812 Lxx02142 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061375.1 213852 R 281090 CDS YP_061376.1 50954088 2939137 complement(216681..217394) 1 NC_006087.1 identified by sequence similarity; phosphatase 217394 2939137 Lxx02170 Leifsonia xyli subsp. xyli str. CTCB07 phosphatase YP_061376.1 216681 R 281090 CDS YP_061377.1 50954089 2938888 complement(217562..217735) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 217735 2938888 Lxx02180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061377.1 217562 R 281090 CDS YP_061378.1 50954090 2938676 217889..220195 1 NC_006087.1 identified by sequence similarity; malto-oligosyltrehalose synthase 220195 treY 2938676 treY Leifsonia xyli subsp. xyli str. CTCB07 malto-oligosyltrehalose synthase YP_061378.1 217889 D 281090 CDS YP_061379.1 50954091 2939156 220192..221874 1 NC_006087.1 identified by sequence similarity; malto-oligosyltrehalose trehalohydrolase 221874 treZ 2939156 treZ Leifsonia xyli subsp. xyli str. CTCB07 malto-oligosyltrehalose trehalohydrolase YP_061379.1 220192 D 281090 CDS YP_061380.1 50954092 2939159 221954..223999 1 NC_006087.1 identified by sequence similarity; glycogen debranching protein 223999 treX 2939159 treX Leifsonia xyli subsp. xyli str. CTCB07 glycogen debranching protein YP_061380.1 221954 D 281090 CDS YP_061381.1 50954093 2939531 complement(224122..225033) 1 NC_006087.1 hypothetical protein 225033 2939531 Lxx02220 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061381.1 224122 R 281090 CDS YP_061382.1 50954094 2939030 225245..225868 1 NC_006087.1 identified by sequence similarity; phosphatidylglycerophosphatase B-like protein 225868 2939030 Lxx02230 Leifsonia xyli subsp. xyli str. CTCB07 phosphatidylglycerophosphatase B-like protein YP_061382.1 225245 D 281090 CDS YP_061384.1 50954096 2938255 complement(229533..229697) 1 NC_006087.1 hypothetical protein 229697 2938255 Lxx02300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061384.1 229533 R 281090 CDS YP_061385.1 50954097 2940245 complement(230645..231259) 1 NC_006087.1 hypothetical protein 231259 2940245 Lxx02310 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061385.1 230645 R 281090 CDS YP_061386.1 50954098 2939209 complement(232592..233836) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 233836 2939209 Lxx02340 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061386.1 232592 R 281090 CDS YP_061387.1 50954099 2939056 complement(233968..235221) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 235221 2939056 Lxx02350 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061387.1 233968 R 281090 CDS YP_061388.1 50954100 2938323 complement(235329..236141) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 236141 2938323 Lxx02360 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061388.1 235329 R 281090 CDS YP_061389.1 50954101 2938591 complement(236138..237403) 1 NC_006087.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 237403 serS 2938591 serS Leifsonia xyli subsp. xyli str. CTCB07 seryl-tRNA synthetase YP_061389.1 236138 R 281090 CDS YP_061390.1 50954102 2939207 complement(237687..238670) 1 NC_006087.1 identified by sequence similarity; prephenate dehydratase 238670 pheA 2939207 pheA Leifsonia xyli subsp. xyli str. CTCB07 prephenate dehydratase YP_061390.1 237687 R 281090 CDS YP_061391.1 50954103 2938970 238740..240389 1 NC_006087.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 240389 pgm 2938970 pgm Leifsonia xyli subsp. xyli str. CTCB07 phosphoglucomutase YP_061391.1 238740 D 281090 CDS YP_061392.1 50954104 2938900 240436..240831 1 NC_006087.1 identified by sequence similarity; transposase 240831 2938900 Lxx02410 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_061392.1 240436 D 281090 CDS YP_061393.1 50954105 2939302 complement(242155..243000) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 243000 2939302 Lxx02440 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061393.1 242155 R 281090 CDS YP_061394.1 50954106 2938406 244342..244611 1 NC_006087.1 hypothetical protein 244611 2938406 Lxx02460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061394.1 244342 D 281090 CDS YP_061395.1 50954107 2938502 245320..246267 1 NC_006087.1 identified by sequence similarity; phage-related lysozyme 246267 2938502 Lxx02470 Leifsonia xyli subsp. xyli str. CTCB07 phage-related lysozyme YP_061395.1 245320 D 281090 CDS YP_061396.1 50954108 2939120 246275..246607 1 NC_006087.1 identified by sequence similarity; hypothetical protein 246607 5 2939120 5 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061396.1 246275 D 281090 CDS YP_061397.1 50954109 2938613 248725..249201 1 NC_006087.1 identified by sequence similarity; hypothetical protein 249201 2938613 Lxx02495 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061397.1 248725 D 281090 CDS YP_061398.1 50954110 2939998 250083..251306 1 NC_006087.1 identified by sequence similarity; DNA methyltransferase 251306 2939998 Lxx02510 Leifsonia xyli subsp. xyli str. CTCB07 DNA methyltransferase YP_061398.1 250083 D 281090 CDS YP_061399.1 50954111 2938315 complement(251772..251945) 1 NC_006087.1 hypothetical protein 251945 2938315 Lxx02520 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061399.1 251772 R 281090 CDS YP_061400.1 50954112 2938574 complement(252391..253980) 1 NC_006087.1 identified by sequence similarity; phytoene dehydrogenase 253980 2938574 Lxx02540 Leifsonia xyli subsp. xyli str. CTCB07 phytoene dehydrogenase YP_061400.1 252391 R 281090 CDS YP_061401.1 50954113 2939364 complement(254029..254919) 1 NC_006087.1 identified by sequence similarity; LysR family transcriptional regulator 254919 2939364 Lxx02550 Leifsonia xyli subsp. xyli str. CTCB07 LysR family transcriptional regulator YP_061401.1 254029 R 281090 CDS YP_061402.1 50954114 2939147 255026..258733 1 NC_006087.1 identified by sequence similarity; proline dehydrogenase 258733 poaA 2939147 poaA Leifsonia xyli subsp. xyli str. CTCB07 proline dehydrogenase YP_061402.1 255026 D 281090 CDS YP_061403.1 50954115 2938466 complement(258746..260179) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 260179 2938466 Lxx02560 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_061403.1 258746 R 281090 CDS YP_061404.1 50954116 2939057 complement(260176..260898) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 260898 tcrA 2939057 tcrA Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_061404.1 260176 R 281090 CDS YP_061405.1 50954117 2939043 261436..262929 1 NC_006087.1 identified by sequence similarity; PTR family peptide transport protein 262929 2939043 Lxx02570 Leifsonia xyli subsp. xyli str. CTCB07 PTR family peptide transport protein YP_061405.1 261436 D 281090 CDS YP_061406.1 50954118 2939118 263460..264629 1 NC_006087.1 identified by sequence similarity; maltose/trehalose porter 264629 malE 2939118 malE Leifsonia xyli subsp. xyli str. CTCB07 maltose/trehalose porter YP_061406.1 263460 D 281090 CDS YP_061407.1 50954119 2939813 264689..265612 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 265612 palF 2939813 palF Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061407.1 264689 D 281090 CDS YP_061408.1 50954120 2938616 265609..266436 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 266436 palG 2938616 palG Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061408.1 265609 D 281090 CDS YP_061409.1 50954121 2940111 268033..268902 1 NC_006087.1 identified by sequence similarity; RpiR family transcriptional regulator 268902 2940111 Lxx02630 Leifsonia xyli subsp. xyli str. CTCB07 RpiR family transcriptional regulator YP_061409.1 268033 D 281090 CDS YP_061410.1 50954122 2938617 272869..273273 1 NC_006087.1 hypothetical protein 273273 2938617 Lxx02690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061410.1 272869 D 281090 CDS YP_061411.1 50954123 2938586 complement(273655..274962) 1 NC_006087.1 identified by sequence similarity; integral membrane efflux protein 274962 pimH 2938586 pimH Leifsonia xyli subsp. xyli str. CTCB07 integral membrane efflux protein YP_061411.1 273655 R 281090 CDS YP_061412.1 50954124 2939609 complement(274959..275246) 1 NC_006087.1 identified by sequence similarity; MarR family transcriptional regulator 275246 marR 2939609 marR Leifsonia xyli subsp. xyli str. CTCB07 MarR family transcriptional regulator YP_061412.1 274959 R 281090 CDS YP_061413.1 50954125 2939803 275496..276077 1 NC_006087.1 identified by sequence similarity; lysophospholipase 276077 2939803 Lxx02720 Leifsonia xyli subsp. xyli str. CTCB07 lysophospholipase YP_061413.1 275496 D 281090 CDS YP_061414.1 50954126 2938809 278621..279850 1 NC_006087.1 identified by sequence similarity; hemagglutinin/hemolysin-like protein 279850 2938809 Lxx02770 Leifsonia xyli subsp. xyli str. CTCB07 hemagglutinin/hemolysin-like protein YP_061414.1 278621 D 281090 CDS YP_061415.1 50954127 2939038 complement(280254..281747) 1 NC_006087.1 identified by sequence similarity; catalase 281747 katA 2939038 katA Leifsonia xyli subsp. xyli str. CTCB07 catalase YP_061415.1 280254 R 281090 CDS YP_061416.1 50954128 2938850 complement(281761..282204) 1 NC_006087.1 identified by sequence similarity; ferric uptake regulator family protein 282204 fur 2938850 fur Leifsonia xyli subsp. xyli str. CTCB07 ferric uptake regulator family protein YP_061416.1 281761 R 281090 CDS YP_061417.1 50954129 2939202 complement(282371..284077) 1 NC_006087.1 identified by sequence similarity; Na+/H+ antiporter 284077 2939202 Lxx02800 Leifsonia xyli subsp. xyli str. CTCB07 Na+/H+ antiporter YP_061417.1 282371 R 281090 CDS YP_061418.1 50954130 2939779 284701..285150 1 NC_006087.1 identified by sequence similarity; hypothetical protein 285150 2939779 Lxx02810 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061418.1 284701 D 281090 CDS YP_061419.1 50954131 2939360 285147..285575 1 NC_006087.1 identified by sequence similarity; hypothetical protein 285575 2939360 Lxx02820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061419.1 285147 D 281090 CDS YP_061420.1 50954132 2938628 285610..286746 1 NC_006087.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 286746 murB 2938628 murB Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylenolpyruvoylglucosamine reductase YP_061420.1 285610 D 281090 CDS YP_061421.1 50954133 2940616 286803..287531 1 NC_006087.1 identified by sequence similarity; hypothetical protein 287531 2940616 Lxx02840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061421.1 286803 D 281090 CDS YP_061422.1 50954134 2938879 290173..290445 1 NC_006087.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 290445 secE 2938879 secE Leifsonia xyli subsp. xyli str. CTCB07 preprotein translocase subunit SecE YP_061422.1 290173 D 281090 CDS YP_061423.1 50954135 2940392 290489..291436 1 NC_006087.1 identified by sequence similarity; transcription antitermination factor 291436 nusG 2940392 nusG Leifsonia xyli subsp. xyli str. CTCB07 transcription antitermination factor YP_061423.1 290489 D 281090 CDS YP_061424.1 50954136 2938588 291557..291988 1 NC_006087.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 291988 rplK 2938588 rplK Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L11 YP_061424.1 291557 D 281090 CDS YP_061425.1 50954137 2939373 292063..292752 1 NC_006087.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 292752 rplA 2939373 rplA Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L1 YP_061425.1 292063 D 281090 CDS YP_061426.1 50954138 2938453 293327..293701 1 NC_006087.1 hypothetical protein 293701 2938453 Lxx02930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061426.1 293327 D 281090 CDS YP_061427.1 50954139 2939745 complement(295048..296016) 1 NC_006087.1 identified by sequence similarity; zinc-binding oxidoreductase 296016 2939745 Lxx02950 Leifsonia xyli subsp. xyli str. CTCB07 zinc-binding oxidoreductase YP_061427.1 295048 R 281090 CDS YP_061428.1 50954140 2939001 complement(296219..296980) 1 NC_006087.1 hypothetical protein 296980 2939001 Lxx02960 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061428.1 296219 R 281090 CDS YP_061429.1 50954141 2938877 complement(300486..301214) 1 NC_006087.1 identified by sequence similarity; ThuA protein 301214 thuA 2938877 thuA Leifsonia xyli subsp. xyli str. CTCB07 ThuA protein YP_061429.1 300486 R 281090 CDS YP_061430.1 50954142 2940546 complement(301218..302366) 1 NC_006087.1 identified by sequence similarity; NADH-dependent dehydrogenase 302366 2940546 Lxx03020 Leifsonia xyli subsp. xyli str. CTCB07 NADH-dependent dehydrogenase YP_061430.1 301218 R 281090 CDS YP_061431.1 50954143 2939022 complement(302466..303659) 1 NC_006087.1 identified by sequence similarity; ROK family transcriptional regulator 303659 2939022 Lxx03030 Leifsonia xyli subsp. xyli str. CTCB07 ROK family transcriptional regulator YP_061431.1 302466 R 281090 CDS YP_061432.1 50954144 2938482 303809..304552 1 NC_006087.1 identified by sequence similarity; sugar phosphate isomerase/epimerase 304552 2938482 Lxx03040 Leifsonia xyli subsp. xyli str. CTCB07 sugar phosphate isomerase/epimerase YP_061432.1 303809 D 281090 CDS YP_061433.1 50954145 2938931 304549..305646 1 NC_006087.1 identified by sequence similarity; NADH-dependent dehydrogenase 305646 2938931 Lxx03050 Leifsonia xyli subsp. xyli str. CTCB07 NADH-dependent dehydrogenase YP_061433.1 304549 D 281090 CDS YP_061434.1 50954146 2939204 complement(308269..308940) 1 NC_006087.1 identified by sequence similarity; lipoprotein translocation system 308940 2939204 Lxx03100 Leifsonia xyli subsp. xyli str. CTCB07 lipoprotein translocation system YP_061434.1 308269 R 281090 CDS YP_061435.1 50954147 2939507 complement(308958..310502) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 310502 2939507 Lxx03110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061435.1 308958 R 281090 CDS YP_061436.1 50954148 2938847 310610..311425 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 311425 2938847 Lxx03120 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_061436.1 310610 D 281090 CDS YP_061437.1 50954149 2939485 311464..313062 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 313062 2939485 Lxx03130 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_061437.1 311464 D 281090 CDS YP_061438.1 50954150 2939023 313059..313844 1 NC_006087.1 identified by sequence similarity; hypothetical protein 313844 2939023 Lxx03140 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061438.1 313059 D 281090 CDS YP_061439.1 50954151 2939836 314078..314596 1 NC_006087.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 314596 rplJ 2939836 rplJ Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L10 YP_061439.1 314078 D 281090 CDS YP_061440.1 50954152 2940007 314619..315017 1 NC_006087.1 identified by sequence similarity; 50S ribosomal protein L7/L12 315017 rplL 2940007 rplL Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L7/L12 YP_061440.1 314619 D 281090 CDS YP_061441.1 50954153 2938329 complement(315454..315567) 1 NC_006087.1 hypothetical protein 315567 2938329 Lxx03170 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061441.1 315454 R 281090 CDS YP_061442.1 50954154 2938587 316073..316264 1 NC_006087.1 hypothetical protein 316264 2938587 Lxx03180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061442.1 316073 D 281090 CDS YP_061443.1 50954155 2938743 316261..317946 1 NC_006087.1 identified by sequence similarity; ABC transporter NBP/MSD fusion protein 317946 novA 2938743 novA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter NBP/MSD fusion protein YP_061443.1 316261 D 281090 CDS YP_061444.1 50954156 2939040 complement(318051..318509) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 318509 2939040 Lxx03200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061444.1 318051 R 281090 CDS YP_061445.1 50954157 2938414 complement(318947..319615) 1 NC_006087.1 identified by sequence similarity; DtxR family iron dependent repressor 319615 sirR 2938414 sirR Leifsonia xyli subsp. xyli str. CTCB07 DtxR family iron dependent repressor YP_061445.1 318947 R 281090 CDS YP_061446.1 50954158 2939996 complement(319649..320683) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 320683 2939996 Lxx03220 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061446.1 319649 R 281090 CDS YP_061447.1 50954159 2939611 320962..322116 1 NC_006087.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 322116 metB 2939611 metB Leifsonia xyli subsp. xyli str. CTCB07 cystathionine gamma-synthase YP_061447.1 320962 D 281090 CDS YP_061448.1 50954160 2940586 complement(322239..322343) 1 NC_006087.1 hypothetical protein 322343 2940586 Lxx03240 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061448.1 322239 R 281090 CDS YP_061449.1 50954161 2938849 complement(322611..322910) 1 NC_006087.1 hypothetical protein 322910 2938849 Lxx03250 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061449.1 322611 R 281090 CDS YP_061450.1 50954162 2938907 complement(322940..323620) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 323620 2938907 Lxx03260 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061450.1 322940 R 281090 CDS YP_061451.1 50954163 2938922 324068..325381 1 NC_006087.1 identified by sequence similarity; glycosyl transferase 325381 2938922 Lxx03270 Leifsonia xyli subsp. xyli str. CTCB07 glycosyl transferase YP_061451.1 324068 D 281090 CDS YP_061452.1 50954164 2938481 complement(327746..328087) 1 NC_006087.1 hypothetical protein 328087 2938481 Lxx03300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061452.1 327746 R 281090 CDS YP_061453.1 50954165 2938634 complement(328084..328215) 1 NC_006087.1 hypothetical protein 328215 2938634 Lxx03310 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061453.1 328084 R 281090 CDS YP_061454.1 50954166 2938859 complement(328747..329193) 1 NC_006087.1 hypothetical protein 329193 2938859 Lxx03320 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061454.1 328747 R 281090 CDS YP_061455.1 50954167 2938990 complement(329958..330176) 1 NC_006087.1 hypothetical protein 330176 2938990 Lxx03330 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061455.1 329958 R 281090 CDS YP_061456.1 50954168 2938840 330609..330827 1 NC_006087.1 hypothetical protein 330827 2938840 Lxx03340 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061456.1 330609 D 281090 CDS YP_061457.1 50954169 2940464 330858..330950 1 NC_006087.1 hypothetical protein 330950 2940464 Lxx03350 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061457.1 330858 D 281090 CDS YP_061458.1 50954170 2939469 complement(331041..332474) 1 NC_006087.1 identified by sequence similarity; xylulose kinase 332474 xylB 2939469 xylB Leifsonia xyli subsp. xyli str. CTCB07 xylulose kinase YP_061458.1 331041 R 281090 CDS YP_061459.1 50954171 2938805 complement(332485..333639) 1 NC_006087.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 333639 xylA 2938805 xylA Leifsonia xyli subsp. xyli str. CTCB07 xylose isomerase YP_061459.1 332485 R 281090 CDS YP_061460.1 50954172 2938624 complement(333606..334457) 1 NC_006087.1 hypothetical protein 334457 2938624 Lxx03380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061460.1 333606 R 281090 CDS YP_061461.1 50954173 2938941 334899..335126 1 NC_006087.1 hypothetical protein 335126 2938941 Lxx03400 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061461.1 334899 D 281090 CDS YP_061462.1 50954174 2938874 335128..337257 1 NC_006087.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 337257 pta 2938874 pta Leifsonia xyli subsp. xyli str. CTCB07 phosphate acetyltransferase YP_061462.1 335128 D 281090 CDS YP_061463.1 50954175 2940075 337254..338447 1 NC_006087.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 338447 ackA 2940075 ackA Leifsonia xyli subsp. xyli str. CTCB07 acetate kinase YP_061463.1 337254 D 281090 CDS YP_061464.1 50954176 2938926 338721..341090 1 NC_006087.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 341090 dnaZ 2938926 dnaZ Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase III subunits gamma and tau YP_061464.1 338721 D 281090 CDS YP_061465.1 50954177 2938642 341094..341690 1 NC_006087.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 341690 recR 2938642 recR Leifsonia xyli subsp. xyli str. CTCB07 recombination protein RecR YP_061465.1 341094 D 281090 CDS YP_061466.1 50954178 2939404 341764..343050 1 NC_006087.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 343050 lysC 2939404 lysC Leifsonia xyli subsp. xyli str. CTCB07 aspartate kinase YP_061466.1 341764 D 281090 CDS YP_061467.1 50954179 2938610 343125..344195 1 NC_006087.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 344195 asd 2938610 asd Leifsonia xyli subsp. xyli str. CTCB07 aspartate-semialdehyde dehydrogenase YP_061467.1 343125 D 281090 CDS YP_061468.1 50954180 2939437 344343..345818 1 NC_006087.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 345818 mqoA 2939437 mqoA Leifsonia xyli subsp. xyli str. CTCB07 malate:quinone oxidoreductase YP_061468.1 344343 D 281090 CDS YP_061469.1 50954181 2939950 345976..347019 1 NC_006087.1 identified by sequence similarity; hypothetical protein 347019 2939950 Lxx03480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061469.1 345976 D 281090 CDS YP_061470.1 50954182 2939198 347270..347515 1 NC_006087.1 hypothetical protein 347515 2939198 Lxx03490 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061470.1 347270 D 281090 CDS YP_061471.1 50954183 2938671 348253..348855 1 NC_006087.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 348855 tdk 2938671 tdk Leifsonia xyli subsp. xyli str. CTCB07 thymidine kinase YP_061471.1 348253 D 281090 CDS YP_061472.1 50954184 2938868 348959..350266 1 NC_006087.1 identified by sequence similarity; UDP-glucose 6-dehydrogenase 350266 udgA 2938868 udgA Leifsonia xyli subsp. xyli str. CTCB07 UDP-glucose 6-dehydrogenase YP_061472.1 348959 D 281090 CDS YP_061473.1 50954185 2938886 351527..352138 1 NC_006087.1 identified by sequence similarity; NADH-dependent FMN reductase 352138 msuE 2938886 msuE Leifsonia xyli subsp. xyli str. CTCB07 NADH-dependent FMN reductase YP_061473.1 351527 D 281090 CDS YP_061474.1 50954186 2939817 complement(354949..355218) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 355218 2939817 Lxx03555 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061474.1 354949 R 281090 CDS YP_061475.1 50954187 2939164 complement(355564..356760) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 356760 2939164 Lxx03560 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061475.1 355564 R 281090 CDS YP_061476.1 50954188 2938337 complement(357623..358060) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 358060 2938337 Lxx03565 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061476.1 357623 R 281090 CDS YP_061477.1 50954189 2939506 complement(358429..359733) 1 NC_006087.1 identified by sequence similarity; phage-related integrase 359733 2939506 Lxx03570 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_061477.1 358429 R 281090 CDS YP_061478.1 50954190 2938997 complement(361078..362058) 1 NC_006087.1 identified by sequence similarity; phosphohydrolase 362058 2938997 Lxx03590 Leifsonia xyli subsp. xyli str. CTCB07 phosphohydrolase YP_061478.1 361078 R 281090 CDS YP_061479.1 50954191 2940379 complement(362055..364613) 1 NC_006087.1 identified by sequence similarity; penicillin-binding protein 364613 ponA 2940379 ponA Leifsonia xyli subsp. xyli str. CTCB07 penicillin-binding protein YP_061479.1 362055 R 281090 CDS YP_061480.1 50954192 2938307 364686..364853 1 NC_006087.1 identified by sequence similarity; hypothetical protein 364853 2938307 Lxx03620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061480.1 364686 D 281090 CDS YP_061481.1 50954193 2938830 364853..365323 1 NC_006087.1 identified by sequence similarity; translation initiation inhibitor 365323 2938830 Lxx03610 Leifsonia xyli subsp. xyli str. CTCB07 translation initiation inhibitor YP_061481.1 364853 D 281090 CDS YP_061482.1 50954194 2938845 370583..370669 1 NC_006087.1 hypothetical protein 370669 2938845 Lxx03670 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061482.1 370583 D 281090 CDS YP_061483.1 50954195 2938713 370771..371061 1 NC_006087.1 hypothetical protein 371061 2938713 Lxx03680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061483.1 370771 D 281090 CDS YP_061484.1 50954196 2939664 375552..375857 1 NC_006087.1 identified by sequence similarity; transposase 375857 2939664 Lxx03690 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_061484.1 375552 D 281090 CDS YP_061485.1 50954197 2939003 376712..377821 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx2 377821 tpase 2939003 tpase Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx2 YP_061485.1 376712 D 281090 CDS YP_061486.1 50954198 2938854 complement(379735..380019) 1 NC_006087.1 hypothetical protein 380019 2938854 Lxx03720 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061486.1 379735 R 281090 CDS YP_061487.1 50954199 2940527 380148..380603 1 NC_006087.1 hypothetical protein 380603 2940527 Lxx03730 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061487.1 380148 D 281090 CDS YP_061488.1 50954200 2939032 complement(380600..381547) 1 NC_006087.1 identified by sequence similarity; phage-related lysozyme 381547 lysL 2939032 lysL Leifsonia xyli subsp. xyli str. CTCB07 phage-related lysozyme YP_061488.1 380600 R 281090 CDS YP_061489.1 50954201 2939059 complement(381558..382043) 1 NC_006087.1 hypothetical protein 382043 2939059 Lxx03760 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061489.1 381558 R 281090 CDS YP_061490.1 50954202 2939383 complement(383000..383269) 1 NC_006087.1 hypothetical protein 383269 2939383 Lxx03770 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061490.1 383000 R 281090 CDS YP_061491.1 50954203 2938798 complement(383269..384372) 1 NC_006087.1 hypothetical protein 384372 2938798 Lxx03780 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061491.1 383269 R 281090 CDS YP_061492.1 50954204 2939060 complement(386201..386503) 1 NC_006087.1 hypothetical protein 386503 2939060 Lxx03800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061492.1 386201 R 281090 CDS YP_061493.1 50954205 2939065 complement(386503..388065) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 388065 26 2939065 26 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061493.1 386503 R 281090 CDS YP_061494.1 50954206 2938878 complement(388107..389075) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 389075 2938878 Lxx03830 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061494.1 388107 R 281090 CDS YP_061495.1 50954207 2938890 complement(389463..389849) 1 NC_006087.1 hypothetical protein 389849 2938890 Lxx03840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061495.1 389463 R 281090 CDS YP_061496.1 50954208 2939037 complement(390183..390878) 1 NC_006087.1 identified by sequence similarity; structural phage protein 390878 2939037 Lxx03850 Leifsonia xyli subsp. xyli str. CTCB07 structural phage protein YP_061496.1 390183 R 281090 CDS YP_061497.1 50954209 2940076 complement(391742..392080) 1 NC_006087.1 hypothetical protein 392080 2940076 Lxx03860 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061497.1 391742 R 281090 CDS YP_061498.1 50954210 2938882 complement(392077..392511) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 392511 2938882 Lxx03865 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061498.1 392077 R 281090 CDS YP_061499.1 50954211 2938631 complement(392794..393567) 1 NC_006087.1 hypothetical protein 393567 2938631 Lxx03880 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061499.1 392794 R 281090 CDS YP_061500.1 50954212 2940155 complement(393751..394119) 1 NC_006087.1 hypothetical protein 394119 2940155 Lxx03890 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061500.1 393751 R 281090 CDS YP_061501.1 50954213 2938259 complement(394141..394698) 1 NC_006087.1 hypothetical protein 394698 2938259 Lxx03900 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061501.1 394141 R 281090 CDS YP_061502.1 50954214 2938585 complement(394881..395309) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 395309 2938585 Lxx03905 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061502.1 394881 R 281090 CDS YP_061503.1 50954215 2939034 complement(395410..396117) 1 NC_006087.1 identified by sequence similarity; phage-related portal protein 396117 5 2939034 5 Leifsonia xyli subsp. xyli str. CTCB07 phage-related portal protein YP_061503.1 395410 R 281090 CDS YP_061504.1 50954216 2938924 complement(396180..396866) 1 NC_006087.1 identified by sequence similarity; phage-related portal protein 396866 5 2938924 5 Leifsonia xyli subsp. xyli str. CTCB07 phage-related portal protein YP_061504.1 396180 R 281090 CDS YP_061505.1 50954217 2939071 complement(399503..400588) 1 NC_006087.1 identified by sequence similarity; phage-related terminase 400588 4 2939071 4 Leifsonia xyli subsp. xyli str. CTCB07 phage-related terminase YP_061505.1 399503 R 281090 CDS YP_061506.1 50954218 2938521 complement(401956..402609) 1 NC_006087.1 hypothetical protein 402609 2938521 Lxx03970 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061506.1 401956 R 281090 CDS YP_061507.1 50954219 2939184 complement(403074..403262) 1 NC_006087.1 hypothetical protein 403262 2939184 Lxx03980 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061507.1 403074 R 281090 CDS YP_061508.1 50954220 2938889 complement(403622..403984) 1 NC_006087.1 hypothetical protein 403984 2938889 Lxx03990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061508.1 403622 R 281090 CDS YP_061509.1 50954221 2939340 404648..405418 1 NC_006087.1 identified by sequence similarity; hypothetical protein 405418 2939340 Lxx04010 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061509.1 404648 D 281090 CDS YP_061510.1 50954222 2938715 405500..405679 1 NC_006087.1 identified by sequence similarity; hypothetical protein 405679 2938715 Lxx04020 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061510.1 405500 D 281090 CDS YP_061511.1 50954223 2939535 405696..406004 1 NC_006087.1 hypothetical protein 406004 2939535 Lxx04030 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061511.1 405696 D 281090 CDS YP_061512.1 50954224 2939584 406190..406480 1 NC_006087.1 identified by sequence similarity; membrane-spanning protein 406480 2939584 Lxx04040 Leifsonia xyli subsp. xyli str. CTCB07 membrane-spanning protein YP_061512.1 406190 D 281090 CDS YP_061513.1 50954225 2938975 complement(406514..406765) 1 NC_006087.1 hypothetical protein 406765 2938975 Lxx04050 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061513.1 406514 R 281090 CDS YP_061514.1 50954226 2940335 406905..409847 1 NC_006087.1 identified by sequence similarity; DNA topoisomerase I 409847 topA 2940335 topA Leifsonia xyli subsp. xyli str. CTCB07 DNA topoisomerase I YP_061514.1 406905 D 281090 CDS YP_061515.1 50954227 2939174 409844..410476 1 NC_006087.1 identified by sequence similarity; thymidylate kinase 410476 tmk 2939174 tmk Leifsonia xyli subsp. xyli str. CTCB07 thymidylate kinase YP_061515.1 409844 D 281090 CDS YP_061516.1 50954228 2938843 410517..411707 1 NC_006087.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 411707 2938843 Lxx04080 Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase III subunit delta' YP_061516.1 410517 D 281090 CDS YP_061517.1 50954229 2939013 411704..413260 1 NC_006087.1 identified by sequence similarity; peptidase 413260 slpE 2939013 slpE Leifsonia xyli subsp. xyli str. CTCB07 peptidase YP_061517.1 411704 D 281090 CDS YP_061518.1 50954230 2938625 413324..414064 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 414064 2938625 Lxx04100 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_061518.1 413324 D 281090 CDS YP_061519.1 50954231 2938353 414343..414510 1 NC_006087.1 identified by sequence similarity; hypothetical protein 414510 2938353 Lxx04115 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061519.1 414343 D 281090 CDS YP_061520.1 50954232 2938942 complement(414958..415230) 1 NC_006087.1 hypothetical protein 415230 2938942 Lxx04120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061520.1 414958 R 281090 CDS YP_061521.1 50954233 2938614 complement(415311..415604) 1 NC_006087.1 hypothetical protein 415604 2938614 Lxx04130 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061521.1 415311 R 281090 CDS YP_061522.1 50954234 2939168 416091..417509 1 NC_006087.1 penicillin binding protein; identified by sequence similarity; D-alanyl-D-alanine carboxypeptidase 417509 pbp 2939168 pbp Leifsonia xyli subsp. xyli str. CTCB07 D-alanyl-D-alanine carboxypeptidase YP_061522.1 416091 D 281090 CDS YP_061523.1 50954235 2938875 422447..423208 1 NC_006087.1 identified by sequence similarity; 3-hydroxyacyl-CoA dehydrogenase 423208 fadB 2938875 fadB Leifsonia xyli subsp. xyli str. CTCB07 3-hydroxyacyl-CoA dehydrogenase YP_061523.1 422447 D 281090 CDS YP_061524.1 50954236 2938691 423269..424231 1 NC_006087.1 hypothetical protein 424231 2938691 Lxx04220 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061524.1 423269 D 281090 CDS YP_061525.1 50954237 2938712 complement(424253..425707) 1 NC_006087.1 identified by sequence similarity; transcriptional regulator 425707 hipB 2938712 hipB Leifsonia xyli subsp. xyli str. CTCB07 transcriptional regulator YP_061525.1 424253 R 281090 CDS YP_061526.1 50954238 2939161 425887..427725 1 NC_006087.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 427725 pckG 2939161 pckG Leifsonia xyli subsp. xyli str. CTCB07 phosphoenolpyruvate carboxykinase YP_061526.1 425887 D 281090 CDS YP_061527.1 50954239 2939058 complement(427870..429792) 1 NC_006087.1 identified by sequence similarity; ABC transporter NBP/MSD fusion protein 429792 2939058 Lxx04250 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter NBP/MSD fusion protein YP_061527.1 427870 R 281090 CDS YP_061528.1 50954240 2939552 431664..432101 1 NC_006087.1 identified by sequence similarity; photopigment and puc expression activator 432101 2939552 Lxx04275 Leifsonia xyli subsp. xyli str. CTCB07 photopigment and puc expression activator YP_061528.1 431664 D 281090 CDS YP_061529.1 50954241 2938352 complement(432251..432490) 1 NC_006087.1 identified by sequence similarity; transcription regulator 432490 2938352 Lxx04290 Leifsonia xyli subsp. xyli str. CTCB07 transcription regulator YP_061529.1 432251 R 281090 CDS YP_061530.1 50954242 2939170 432431..433111 1 NC_006087.1 identified by sequence similarity; transposase, undefined 433111 tnp 2939170 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, undefined YP_061530.1 432431 D 281090 CDS YP_061531.1 50954243 2939172 434868..436079 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 436079 tnp 2939172 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_061531.1 434868 D 281090 CDS YP_061532.1 50954244 2939838 436310..436738 1 NC_006087.1 hypothetical protein 436738 2939838 Lxx04330 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061532.1 436310 D 281090 CDS YP_061533.1 50954245 2939176 complement(436851..437327) 1 NC_006087.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 437327 ribH 2939176 ribH Leifsonia xyli subsp. xyli str. CTCB07 6,7-dimethyl-8-ribityllumazine synthase YP_061533.1 436851 R 281090 CDS YP_061534.1 50954246 2939011 complement(437324..438601) 1 NC_006087.1 identified by sequence similarity; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phosphate synthase 438601 ribA 2939011 ribA Leifsonia xyli subsp. xyli str. CTCB07 3,4-dihydroxy-2-butanone-4-phosphate synthase YP_061534.1 437324 R 281090 CDS YP_061535.1 50954247 2939190 complement(438598..439221) 1 NC_006087.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 439221 ribC 2939190 ribC Leifsonia xyli subsp. xyli str. CTCB07 riboflavin synthase subunit alpha YP_061535.1 438598 R 281090 CDS YP_061536.1 50954248 2940246 complement(439223..440248) 1 NC_006087.1 bifunctional; identified by sequence similarity; riboflavin-specific reductase; riboflavin-specific deaminase 440248 ribD 2940246 ribD Leifsonia xyli subsp. xyli str. CTCB07 riboflavin-specific deaminase YP_061536.1 439223 R 281090 CDS YP_061537.1 50954249 2938341 440589..441209 1 NC_006087.1 hypothetical protein 441209 2938341 Lxx04380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061537.1 440589 D 281090 CDS YP_061538.1 50954250 2938325 441929..442225 1 NC_006087.1 hypothetical protein 442225 2938325 Lxx04400 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061538.1 441929 D 281090 CDS YP_061539.1 50954251 2938885 442841..443617 1 NC_006087.1 identified by sequence similarity; glycerol uptake facilitator protein 443617 glpF 2938885 glpF Leifsonia xyli subsp. xyli str. CTCB07 glycerol uptake facilitator protein YP_061539.1 442841 D 281090 CDS YP_061540.1 50954252 2939235 443702..445222 1 NC_006087.1 identified by sequence similarity; glycerol kinase 445222 glpk 2939235 glpk Leifsonia xyli subsp. xyli str. CTCB07 glycerol kinase YP_061540.1 443702 D 281090 CDS YP_061541.1 50954253 2938829 445353..445802 1 NC_006087.1 hypothetical protein 445802 2938829 Lxx04430 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061541.1 445353 D 281090 CDS YP_061542.1 50954254 2938522 complement(445852..446448) 1 NC_006087.1 identified by sequence similarity; acetyltransferase 446448 2938522 Lxx04440 Leifsonia xyli subsp. xyli str. CTCB07 acetyltransferase YP_061542.1 445852 R 281090 CDS YP_061543.1 50954255 2939368 complement(446445..447458) 1 NC_006087.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 447458 trpS 2939368 trpS Leifsonia xyli subsp. xyli str. CTCB07 tryptophanyl-tRNA synthetase YP_061543.1 446445 R 281090 CDS YP_061544.1 50954256 2939805 complement(447490..448326) 1 NC_006087.1 identified by sequence similarity; exodeoxyribonuclease III 448326 2939805 Lxx04460 Leifsonia xyli subsp. xyli str. CTCB07 exodeoxyribonuclease III YP_061544.1 447490 R 281090 CDS YP_061545.1 50954257 2938775 complement(449594..449773) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 449773 2938775 Lxx04490 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061545.1 449594 R 281090 CDS YP_061546.1 50954258 2938901 complement(449936..450229) 1 NC_006087.1 hypothetical protein 450229 2938901 Lxx04500 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061546.1 449936 R 281090 CDS YP_061547.1 50954259 2939201 complement(450475..451236) 1 NC_006087.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 451236 sdhB 2939201 sdhB Leifsonia xyli subsp. xyli str. CTCB07 succinate dehydrogenase iron-sulfur subunit YP_061547.1 450475 R 281090 CDS YP_061548.1 50954260 2939200 complement(451236..453038) 1 NC_006087.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 453038 sdhA 2939200 sdhA Leifsonia xyli subsp. xyli str. CTCB07 succinate dehydrogenase flavoprotein subunit YP_061548.1 451236 R 281090 CDS YP_061549.1 50954261 2939086 complement(453061..453504) 1 NC_006087.1 identified by sequence similarity; succinate dehydrogenase, membrane subunit 453504 sdhD 2939086 sdhD Leifsonia xyli subsp. xyli str. CTCB07 succinate dehydrogenase, membrane subunit YP_061549.1 453061 R 281090 CDS YP_061550.1 50954262 2940211 complement(453506..453844) 1 NC_006087.1 identified by sequence similarity; succinate dehydrogenase, cytochrome b-556 subunit 453844 sdhC 2940211 sdhC Leifsonia xyli subsp. xyli str. CTCB07 succinate dehydrogenase, cytochrome b-556 subunit YP_061550.1 453506 R 281090 CDS YP_061551.1 50954263 2938815 454092..454316 1 NC_006087.1 hypothetical protein 454316 2938815 Lxx04550 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061551.1 454092 D 281090 CDS YP_061552.1 50954264 2938604 complement(454351..455499) 1 NC_006087.1 identified by sequence similarity; mannose-1-phosphate guanylyltransferase 455499 manC 2938604 manC Leifsonia xyli subsp. xyli str. CTCB07 mannose-1-phosphate guanylyltransferase YP_061552.1 454351 R 281090 CDS YP_061553.1 50954265 2938773 456896..457864 1 NC_006087.1 identified by sequence similarity; metal ion transport protein 457864 corA 2938773 corA Leifsonia xyli subsp. xyli str. CTCB07 metal ion transport protein YP_061553.1 456896 D 281090 CDS YP_061554.1 50954266 2938503 458160..459245 1 NC_006087.1 identified by sequence similarity; surface lipoprotein 459245 2938503 Lxx04600 Leifsonia xyli subsp. xyli str. CTCB07 surface lipoprotein YP_061554.1 458160 D 281090 CDS YP_061555.1 50954267 2938605 459328..460866 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 460866 rbsA 2938605 rbsA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_061555.1 459328 D 281090 CDS YP_061556.1 50954268 2938376 461103..462188 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 462188 2938376 Lxx04620 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061556.1 461103 D 281090 CDS YP_061557.1 50954269 2938801 462563..463480 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 463480 2938801 Lxx04630 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061557.1 462563 D 281090 CDS YP_061558.1 50954270 2938993 463477..463887 1 NC_006087.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 463887 cdd 2938993 cdd Leifsonia xyli subsp. xyli str. CTCB07 cytidine deaminase YP_061558.1 463477 D 281090 CDS YP_061559.1 50954271 2938842 463900..465216 1 NC_006087.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 465216 deoA 2938842 deoA Leifsonia xyli subsp. xyli str. CTCB07 thymidine phosphorylase YP_061559.1 463900 D 281090 CDS YP_061560.1 50954272 2940147 465218..466342 1 NC_006087.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 466342 add 2940147 add Leifsonia xyli subsp. xyli str. CTCB07 adenosine deaminase YP_061560.1 465218 D 281090 CDS YP_061561.1 50954273 2938491 466367..466828 1 NC_006087.1 identified by sequence similarity; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein 466828 2938491 Lxx04670 Leifsonia xyli subsp. xyli str. CTCB07 phosphotransferase system mannitol/fructose-specific IIA domain-containing protein YP_061561.1 466367 D 281090 CDS YP_061562.1 50954274 2940242 466825..467097 1 NC_006087.1 identified by sequence similarity; phosphotransferase IIB component 467097 2940242 Lxx04680 Leifsonia xyli subsp. xyli str. CTCB07 phosphotransferase IIB component YP_061562.1 466825 D 281090 CDS YP_061563.1 50954275 2939010 complement(467194..468873) 1 NC_006087.1 identified by sequence similarity; phosphomannomutase 468873 cpsG 2939010 cpsG Leifsonia xyli subsp. xyli str. CTCB07 phosphomannomutase YP_061563.1 467194 R 281090 CDS YP_061564.1 50954276 2939698 complement(468870..469700) 1 NC_006087.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 469700 deoD 2939698 deoD Leifsonia xyli subsp. xyli str. CTCB07 purine nucleoside phosphorylase YP_061564.1 468870 R 281090 CDS YP_061565.1 50954277 2939299 469785..471221 1 NC_006087.1 catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity; flavoprotein disulfide reductase 471221 lpdA 2939299 lpdA Leifsonia xyli subsp. xyli str. CTCB07 flavoprotein disulfide reductase YP_061565.1 469785 D 281090 CDS YP_061566.1 50954278 2938963 complement(473131..474891) 1 NC_006087.1 identified by sequence similarity; biotin carboxylase 474891 accC 2938963 accC Leifsonia xyli subsp. xyli str. CTCB07 biotin carboxylase YP_061566.1 473131 R 281090 CDS YP_061567.1 50954279 2938841 complement(474971..475618) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 475618 2938841 Lxx04750 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061567.1 474971 R 281090 CDS YP_061568.1 50954280 2938627 477610..478884 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 478884 2938627 Lxx04770 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_061568.1 477610 D 281090 CDS YP_061569.1 50954281 2940608 478881..479906 1 NC_006087.1 hypothetical protein 479906 2940608 Lxx04780 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061569.1 478881 D 281090 CDS YP_061570.1 50954282 2939729 complement(480799..481026) 1 NC_006087.1 hypothetical protein 481026 2939729 Lxx04790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061570.1 480799 R 281090 CDS YP_061571.1 50954283 2939294 complement(481023..482645) 1 NC_006087.1 identified by sequence similarity; propionyl-CoA carboxylase subunit beta 482645 pccB 2939294 pccB Leifsonia xyli subsp. xyli str. CTCB07 propionyl-CoA carboxylase subunit beta YP_061571.1 481023 R 281090 CDS YP_061572.1 50954284 2939898 482683..483495 1 NC_006087.1 identified by sequence similarity; biotin acetyl-CoA-carboxylase synthetase 483495 birA 2939898 birA Leifsonia xyli subsp. xyli str. CTCB07 biotin acetyl-CoA-carboxylase synthetase YP_061572.1 482683 D 281090 CDS YP_061573.1 50954285 2940051 complement(484014..484613) 1 NC_006087.1 identified by sequence similarity; integral membrane protein 484613 2940051 Lxx04815 Leifsonia xyli subsp. xyli str. CTCB07 integral membrane protein YP_061573.1 484014 R 281090 CDS YP_061574.1 50954286 2939020 484638..485807 1 NC_006087.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 485807 purK 2939020 purK Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_061574.1 484638 D 281090 CDS YP_061575.1 50954287 2939017 485874..486377 1 NC_006087.1 identified by sequence similarity; phosphoribosylaminoimidazole carboxylase, catalytic subunit protein 486377 purE 2939017 purE Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylaminoimidazole carboxylase, catalytic subunit protein YP_061575.1 485874 D 281090 CDS YP_061576.1 50954288 2939131 486374..486769 1 NC_006087.1 hypothetical protein 486769 2939131 Lxx04860 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061576.1 486374 D 281090 CDS YP_061577.1 50954289 2940316 complement(487782..488915) 1 NC_006087.1 identified by sequence similarity; mannosyltransferase 488915 2940316 Lxx04890 Leifsonia xyli subsp. xyli str. CTCB07 mannosyltransferase YP_061577.1 487782 R 281090 CDS YP_061578.1 50954290 2938720 complement(488902..489789) 1 NC_006087.1 identified by sequence similarity; dTDP-4-dehydrorhamnose reductase 489789 strL 2938720 strL Leifsonia xyli subsp. xyli str. CTCB07 dTDP-4-dehydrorhamnose reductase YP_061578.1 488902 R 281090 CDS YP_061579.1 50954291 2940496 complement(489801..490790) 1 NC_006087.1 identified by sequence similarity; thymidine diphosphoglucose 4,6-dehydratase 490790 2940496 Lxx04910 Leifsonia xyli subsp. xyli str. CTCB07 thymidine diphosphoglucose 4,6-dehydratase YP_061579.1 489801 R 281090 CDS YP_061580.1 50954292 2940124 490878..491483 1 NC_006087.1 identified by sequence similarity; dTDP-4-dehydrorhamnose 3,5-epimerase 491483 rmlC 2940124 rmlC Leifsonia xyli subsp. xyli str. CTCB07 dTDP-4-dehydrorhamnose 3,5-epimerase YP_061580.1 490878 D 281090 CDS YP_061581.1 50954293 2938497 491500..492363 1 NC_006087.1 identified by sequence similarity; glucose-1-phosphate thymidylyltransferase 492363 rmlA 2938497 rmlA Leifsonia xyli subsp. xyli str. CTCB07 glucose-1-phosphate thymidylyltransferase YP_061581.1 491500 D 281090 CDS YP_061582.1 50954294 2939064 complement(492370..493224) 1 NC_006087.1 identified by sequence similarity; dTDP-rhamnosyl transferase 493224 wbbL 2939064 wbbL Leifsonia xyli subsp. xyli str. CTCB07 dTDP-rhamnosyl transferase YP_061582.1 492370 R 281090 CDS YP_061583.1 50954295 2938590 493413..494645 1 NC_006087.1 identified by sequence similarity; glycosyl transferase 494645 wbbX 2938590 wbbX Leifsonia xyli subsp. xyli str. CTCB07 glycosyl transferase YP_061583.1 493413 D 281090 CDS YP_061584.1 50954296 2938662 494638..495564 1 NC_006087.1 identified by sequence similarity; UDP-glucose 4-epimerase 495564 galE 2938662 galE Leifsonia xyli subsp. xyli str. CTCB07 UDP-glucose 4-epimerase YP_061584.1 494638 D 281090 CDS YP_061585.1 50954297 2939016 495575..496540 1 NC_006087.1 identified by sequence similarity; rhamnosyltransferase 496540 2939016 Lxx04970 Leifsonia xyli subsp. xyli str. CTCB07 rhamnosyltransferase YP_061585.1 495575 D 281090 CDS YP_061586.1 50954298 2939171 496898..497902 1 NC_006087.1 identified by sequence similarity; hypothetical protein 497902 2939171 Lxx04980 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061586.1 496898 D 281090 CDS YP_061587.1 50954299 2939642 complement(498823..500025) 1 NC_006087.1 identified by sequence similarity; lipopolysaccharide exporter 500025 rfbB 2939642 rfbB Leifsonia xyli subsp. xyli str. CTCB07 lipopolysaccharide exporter YP_061587.1 498823 R 281090 CDS YP_061588.1 50954300 2938436 complement(500036..500971) 1 NC_006087.1 identified by sequence similarity; lipopolysaccharide exporter 500971 rfbA 2938436 rfbA Leifsonia xyli subsp. xyli str. CTCB07 lipopolysaccharide exporter YP_061588.1 500036 R 281090 CDS YP_061589.1 50954301 2939260 complement(501087..503402) 1 NC_006087.1 identified by sequence similarity; lysozyme 503402 2939260 Lxx05030 Leifsonia xyli subsp. xyli str. CTCB07 lysozyme YP_061589.1 501087 R 281090 CDS YP_061590.1 50954302 2938608 504120..506528 1 NC_006087.1 identified by sequence similarity; hemagglutinin-like protein 506528 2938608 Lxx05050 Leifsonia xyli subsp. xyli str. CTCB07 hemagglutinin-like protein YP_061590.1 504120 D 281090 CDS YP_061591.1 50954303 2938846 506614..508110 1 NC_006087.1 hypothetical protein 508110 2938846 Lxx05060 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061591.1 506614 D 281090 CDS YP_061592.1 50954304 2939271 complement(508317..509441) 1 NC_006087.1 identified by sequence similarity; O-antigen biosynthesis protein 509441 wbjD 2939271 wbjD Leifsonia xyli subsp. xyli str. CTCB07 O-antigen biosynthesis protein YP_061592.1 508317 R 281090 CDS YP_061593.1 50954305 2938594 complement(509438..510469) 1 NC_006087.1 identified by sequence similarity; polysaccharide biosynthesis protein 510469 wbjB 2938594 wbjB Leifsonia xyli subsp. xyli str. CTCB07 polysaccharide biosynthesis protein YP_061593.1 509438 R 281090 CDS YP_061594.1 50954306 2938295 complement(510466..511371) 1 NC_006087.1 identified by sequence similarity; dTDP-4-dehydrorhamnose reductase 511371 rfbD 2938295 rfbD Leifsonia xyli subsp. xyli str. CTCB07 dTDP-4-dehydrorhamnose reductase YP_061594.1 510466 R 281090 CDS YP_061595.1 50954307 2940098 complement(511383..512564) 1 NC_006087.1 identified by sequence similarity; glycosyltransferase 512564 bplE 2940098 bplE Leifsonia xyli subsp. xyli str. CTCB07 glycosyltransferase YP_061595.1 511383 R 281090 CDS YP_061596.1 50954308 2939495 complement(512542..513315) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 513315 2939495 Lxx05110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061596.1 512542 R 281090 CDS YP_061597.1 50954309 2940483 complement(513804..514172) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 514172 2940483 Lxx05120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061597.1 513804 R 281090 CDS YP_061598.1 50954310 2939369 complement(514172..514909) 1 NC_006087.1 identified by sequence similarity; dolichyl-phosphate mannose synthase 514909 ycbB 2939369 ycbB Leifsonia xyli subsp. xyli str. CTCB07 dolichyl-phosphate mannose synthase YP_061598.1 514172 R 281090 CDS YP_061599.1 50954311 2938880 514972..515958 1 NC_006087.1 identified by sequence similarity; rhamnosyltransferase 515958 rgpB 2938880 rgpB Leifsonia xyli subsp. xyli str. CTCB07 rhamnosyltransferase YP_061599.1 514972 D 281090 CDS YP_061600.1 50954312 2939937 complement(515955..517205) 1 NC_006087.1 identified by sequence similarity; exopolysaccharide production protein 517205 exoQ 2939937 exoQ Leifsonia xyli subsp. xyli str. CTCB07 exopolysaccharide production protein YP_061600.1 515955 R 281090 CDS YP_061601.1 50954313 2938622 complement(517251..518600) 1 NC_006087.1 identified by sequence similarity; exopolysaccharide production protein 518600 exoQ 2938622 exoQ Leifsonia xyli subsp. xyli str. CTCB07 exopolysaccharide production protein YP_061601.1 517251 R 281090 CDS YP_061602.1 50954314 2938621 complement(518597..519748) 1 NC_006087.1 identified by sequence similarity; mannose-6-phosphate isomerase 519748 manA 2938621 manA Leifsonia xyli subsp. xyli str. CTCB07 mannose-6-phosphate isomerase YP_061602.1 518597 R 281090 CDS YP_061603.1 50954315 2939033 complement(521212..521769) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 521769 2939033 Lxx05200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061603.1 521212 R 281090 CDS YP_061604.1 50954316 2938852 521864..522826 1 NC_006087.1 identified by sequence similarity; UDP-glucose 4-epimerase 522826 exoB 2938852 exoB Leifsonia xyli subsp. xyli str. CTCB07 UDP-glucose 4-epimerase YP_061604.1 521864 D 281090 CDS YP_061605.1 50954317 2938493 523071..523337 1 NC_006087.1 identified by sequence similarity; regulatory protein 523337 whiB 2938493 whiB Leifsonia xyli subsp. xyli str. CTCB07 regulatory protein YP_061605.1 523071 D 281090 CDS YP_061606.1 50954318 2939317 529392..530453 1 NC_006087.1 hypothetical protein 530453 2939317 Lxx05260 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061606.1 529392 D 281090 CDS YP_061607.1 50954319 2938682 complement(530631..531080) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 531080 2938682 Lxx05270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061607.1 530631 R 281090 CDS YP_061608.1 50954320 2940357 531122..531334 1 NC_006087.1 identified by sequence similarity; hypothetical protein 531334 2940357 Lxx05280 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061608.1 531122 D 281090 CDS YP_061609.1 50954321 2938596 531360..532787 1 NC_006087.1 converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; phosphomannomutase/phosphoglucomutase 532787 manB 2938596 manB Leifsonia xyli subsp. xyli str. CTCB07 phosphomannomutase/phosphoglucomutase YP_061609.1 531360 D 281090 CDS YP_061610.1 50954322 2938317 complement(534059..535063) 1 NC_006087.1 identified by sequence similarity; secreted protein 535063 2938317 Lxx05320 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_061610.1 534059 R 281090 CDS YP_061611.1 50954323 2939041 complement(535269..535907) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 535907 2939041 Lxx05330 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061611.1 535269 R 281090 CDS YP_061612.1 50954324 2938673 complement(535912..537390) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 537390 2938673 Lxx05340 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061612.1 535912 R 281090 CDS YP_061613.1 50954325 2938668 537390..538073 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 538073 mtrA 2938668 mtrA Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_061613.1 537390 D 281090 CDS YP_061614.1 50954326 2939014 538090..539748 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 539748 2939014 Lxx05360 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_061614.1 538090 D 281090 CDS YP_061615.1 50954327 2938698 539784..541457 1 NC_006087.1 identified by sequence similarity; lipoprotein LpqB 541457 lpqB 2938698 lpqB Leifsonia xyli subsp. xyli str. CTCB07 lipoprotein LpqB YP_061615.1 539784 D 281090 CDS YP_061616.1 50954328 2939099 541647..542396 1 NC_006087.1 identified by sequence similarity; competence protein F 542396 comF 2939099 comF Leifsonia xyli subsp. xyli str. CTCB07 competence protein F YP_061616.1 541647 D 281090 CDS YP_061617.1 50954329 2938413 542635..543333 1 NC_006087.1 identified by sequence similarity; sigma-54 modulation protein 543333 2938413 Lxx05390 Leifsonia xyli subsp. xyli str. CTCB07 sigma-54 modulation protein YP_061617.1 542635 D 281090 CDS YP_061618.1 50954330 2940590 543545..546352 1 NC_006087.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 546352 secA 2940590 secA Leifsonia xyli subsp. xyli str. CTCB07 preprotein translocase subunit SecA YP_061618.1 543545 D 281090 CDS YP_061619.1 50954331 2939026 546476..546916 1 NC_006087.1 identified by sequence similarity; hypothetical protein 546916 2939026 Lxx05410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061619.1 546476 D 281090 CDS YP_061620.1 50954332 2940332 547250..548461 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 548461 tnp 2940332 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_061620.1 547250 D 281090 CDS YP_061621.1 50954333 2938779 548467..549378 1 NC_006087.1 identified by sequence similarity; hypothetical protein 549378 2938779 Lxx05440 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061621.1 548467 D 281090 CDS YP_061622.1 50954334 2940275 549673..552174 1 NC_006087.1 identified by sequence similarity; penicillin-binding protein 552174 pon1 2940275 pon1 Leifsonia xyli subsp. xyli str. CTCB07 penicillin-binding protein YP_061622.1 549673 D 281090 CDS YP_061623.1 50954335 2938814 552594..552728 1 NC_006087.1 hypothetical protein 552728 2938814 Lxx05460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061623.1 552594 D 281090 CDS YP_061624.1 50954336 2939002 555976..556524 1 NC_006087.1 identified by sequence similarity; hypothetical protein 556524 2939002 Lxx05500 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061624.1 555976 D 281090 CDS YP_061625.1 50954337 2939246 complement(556773..557090) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 557090 2939246 Lxx05505 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061625.1 556773 R 281090 CDS YP_061626.1 50954338 2940256 557322..557684 1 NC_006087.1 hypothetical protein 557684 2940256 Lxx05510 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061626.1 557322 D 281090 CDS YP_061627.1 50954339 2939508 557698..558378 1 NC_006087.1 identified by sequence similarity; hypothetical protein 558378 2939508 Lxx05520 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061627.1 557698 D 281090 CDS YP_061628.1 50954340 2938948 complement(559248..560057) 1 NC_006087.1 identified by sequence similarity; transposase 560057 tpase2 2938948 tpase2 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_061628.1 559248 R 281090 CDS YP_061629.1 50954341 2939210 complement(561497..561982) 1 NC_006087.1 hypothetical protein 561982 2939210 Lxx05560 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061629.1 561497 R 281090 CDS YP_061630.1 50954342 2939870 563132..563236 1 NC_006087.1 hypothetical protein 563236 2939870 Lxx05580 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061630.1 563132 D 281090 CDS YP_061631.1 50954343 2938394 564186..564614 1 NC_006087.1 hypothetical protein 564614 2938394 Lxx05600 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061631.1 564186 D 281090 CDS YP_061632.1 50954344 2938872 complement(567651..568451) 1 NC_006087.1 identified by sequence similarity; oxidoreductase 568451 2938872 Lxx05610 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_061632.1 567651 R 281090 CDS YP_061633.1 50954345 2940129 569759..570673 1 NC_006087.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 570673 ppnK 2940129 ppnK Leifsonia xyli subsp. xyli str. CTCB07 inorganic polyphosphate/ATP-NAD kinase YP_061633.1 569759 D 281090 CDS YP_061634.1 50954346 2939264 570666..572405 1 NC_006087.1 identified by sequence similarity; DNA repair protein RecN 572405 recN 2939264 recN Leifsonia xyli subsp. xyli str. CTCB07 DNA repair protein RecN YP_061634.1 570666 D 281090 CDS YP_061635.1 50954347 2938876 575315..577036 1 NC_006087.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 577036 pyrG 2938876 pyrG Leifsonia xyli subsp. xyli str. CTCB07 CTP synthetase YP_061635.1 575315 D 281090 CDS YP_061636.1 50954348 2940096 577036..577680 1 NC_006087.1 identified by sequence similarity; NUDIX hydrolase 577680 mutT 2940096 mutT Leifsonia xyli subsp. xyli str. CTCB07 NUDIX hydrolase YP_061636.1 577036 D 281090 CDS YP_061637.1 50954349 2940566 577677..578582 1 NC_006087.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 578582 xerD 2940566 xerD Leifsonia xyli subsp. xyli str. CTCB07 site-specific tyrosine recombinase XerD YP_061637.1 577677 D 281090 CDS YP_061638.1 50954350 2938744 578731..579630 1 NC_006087.1 identified by sequence similarity; chromosome partitioning protein 579630 parA 2938744 parA Leifsonia xyli subsp. xyli str. CTCB07 chromosome partitioning protein YP_061638.1 578731 D 281090 CDS YP_061639.1 50954351 2940518 579614..580453 1 NC_006087.1 identified by sequence similarity; hypothetical protein 580453 2940518 Lxx05690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061639.1 579614 D 281090 CDS YP_061640.1 50954352 2939247 580443..581057 1 NC_006087.1 identified by sequence similarity; hypothetical protein 581057 2939247 Lxx05700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061640.1 580443 D 281090 CDS YP_061641.1 50954353 2938314 581047..581829 1 NC_006087.1 identified by sequence similarity; RNA pseudouridine synthase 581829 rsuA 2938314 rsuA Leifsonia xyli subsp. xyli str. CTCB07 RNA pseudouridine synthase YP_061641.1 581047 D 281090 CDS YP_061642.1 50954354 2938250 581839..582927 1 NC_006087.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 582927 tyrA 2938250 tyrA Leifsonia xyli subsp. xyli str. CTCB07 prephenate dehydrogenase YP_061642.1 581839 D 281090 CDS YP_061643.1 50954355 2939332 582924..583607 1 NC_006087.1 identified by sequence similarity; cytidylate kinase 583607 cmk 2939332 cmk Leifsonia xyli subsp. xyli str. CTCB07 cytidylate kinase YP_061643.1 582924 D 281090 CDS YP_061644.1 50954356 2938680 583660..585105 1 NC_006087.1 synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 585105 engA 2938680 engA Leifsonia xyli subsp. xyli str. CTCB07 GTP-binding protein EngA YP_061644.1 583660 D 281090 CDS YP_061645.1 50954357 2939527 585124..585603 1 NC_006087.1 hypothetical protein 585603 2939527 Lxx05750 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061645.1 585124 D 281090 CDS YP_061646.1 50954358 2939181 complement(586105..586299) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 586299 2939181 Lxx05765 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061646.1 586105 R 281090 CDS YP_061647.1 50954359 2939375 complement(586550..586888) 1 NC_006087.1 identified by sequence similarity; phage-related integrase 586888 2939375 Lxx05770 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_061647.1 586550 R 281090 CDS YP_061648.1 50954360 2939606 complement(586937..587290) 1 NC_006087.1 identified by sequence similarity; phage-related integrase 587290 2939606 Lxx05780 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_061648.1 586937 R 281090 CDS YP_061649.1 50954361 2938516 589905..590750 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 590750 malG 2938516 malG Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061649.1 589905 D 281090 CDS YP_061650.1 50954362 2938694 590805..591869 1 NC_006087.1 identified by sequence similarity; glycerol-3-phosphate ABC transporter receptor protein 591869 2938694 Lxx05830 Leifsonia xyli subsp. xyli str. CTCB07 glycerol-3-phosphate ABC transporter receptor protein YP_061650.1 590805 D 281090 CDS YP_061651.1 50954363 2939062 complement(592255..592455) 1 NC_006087.1 hypothetical protein 592455 2939062 Lxx05840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061651.1 592255 R 281090 CDS YP_061652.1 50954364 2939900 complement(592704..593531) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 593531 2939900 Lxx05860 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061652.1 592704 R 281090 CDS YP_061653.1 50954365 2939365 595222..599037 1 NC_006087.1 identified by sequence similarity; hypothetical protein 599037 2939365 Lxx05870 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061653.1 595222 D 281090 CDS YP_061654.1 50954366 2939219 complement(599276..599713) 1 NC_006087.1 identified by sequence similarity; large-conductance mechanosensitive channel 599713 mscL 2939219 mscL Leifsonia xyli subsp. xyli str. CTCB07 large-conductance mechanosensitive channel YP_061654.1 599276 R 281090 CDS YP_061655.1 50954367 2938523 complement(599746..600039) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 600039 2938523 Lxx05895 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061655.1 599746 R 281090 CDS YP_061656.1 50954368 2939825 complement(600059..600643) 1 NC_006087.1 identified by sequence similarity; 5-formyltetrahydrofolate cyclo-ligase 600643 2939825 Lxx05900 Leifsonia xyli subsp. xyli str. CTCB07 5-formyltetrahydrofolate cyclo-ligase YP_061656.1 600059 R 281090 CDS YP_061657.1 50954369 2939339 600703..601674 1 NC_006087.1 identified by sequence similarity; UTP-glucose-1-phosphate uridylyltransferase 601674 galU 2939339 galU Leifsonia xyli subsp. xyli str. CTCB07 UTP-glucose-1-phosphate uridylyltransferase YP_061657.1 600703 D 281090 CDS YP_061658.1 50954370 2940266 601697..602359 1 NC_006087.1 identified by sequence similarity; ribosomal-protein-alanine N-acetyltransferase 602359 rimJ 2940266 rimJ Leifsonia xyli subsp. xyli str. CTCB07 ribosomal-protein-alanine N-acetyltransferase YP_061658.1 601697 D 281090 CDS YP_061659.1 50954371 2939942 602442..603491 1 NC_006087.1 identified by sequence similarity; hypothetical protein 603491 2939942 Lxx05930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061659.1 602442 D 281090 CDS YP_061660.1 50954372 2939238 complement(603865..605076) 1 NC_006087.1 identified by sequence similarity; ArsR family transcriptional regulator 605076 2939238 Lxx05935 Leifsonia xyli subsp. xyli str. CTCB07 ArsR family transcriptional regulator YP_061660.1 603865 R 281090 CDS YP_061661.1 50954373 2939519 605571..606782 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 606782 tnp 2939519 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_061661.1 605571 D 281090 CDS YP_061662.1 50954374 2938857 607367..608200 1 NC_006087.1 identified by sequence similarity; rRNA methyltransferase 608200 2938857 Lxx05970 Leifsonia xyli subsp. xyli str. CTCB07 rRNA methyltransferase YP_061662.1 607367 D 281090 CDS YP_061663.1 50954375 2938643 608282..609322 1 NC_006087.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 609322 pheS 2938643 pheS Leifsonia xyli subsp. xyli str. CTCB07 phenylalanyl-tRNA synthetase subunit alpha YP_061663.1 608282 D 281090 CDS YP_061664.1 50954376 2939196 609322..611865 1 NC_006087.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 611865 pheT 2939196 pheT Leifsonia xyli subsp. xyli str. CTCB07 phenylalanyl-tRNA synthetase subunit beta YP_061664.1 609322 D 281090 CDS YP_061665.1 50954377 2938623 complement(611874..612443) 1 NC_006087.1 hypothetical protein 612443 2938623 Lxx06000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061665.1 611874 R 281090 CDS YP_061666.1 50954378 2939798 complement(614352..614543) 1 NC_006087.1 hypothetical protein 614543 2939798 Lxx06010 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061666.1 614352 R 281090 CDS YP_061667.1 50954379 2938721 614898..615941 1 NC_006087.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 615941 argC 2938721 argC Leifsonia xyli subsp. xyli str. CTCB07 N-acetyl-gamma-glutamyl-phosphate reductase YP_061667.1 614898 D 281090 CDS YP_061668.1 50954380 2940572 615938..617092 1 NC_006087.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 617092 argJ 2940572 argJ Leifsonia xyli subsp. xyli str. CTCB07 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_061668.1 615938 D 281090 CDS YP_061669.1 50954381 2940231 617094..618002 1 NC_006087.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 618002 argB 2940231 argB Leifsonia xyli subsp. xyli str. CTCB07 acetylglutamate kinase YP_061669.1 617094 D 281090 CDS YP_061670.1 50954382 2939028 617999..619210 1 NC_006087.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 619210 argD 2939028 argD Leifsonia xyli subsp. xyli str. CTCB07 acetylornithine aminotransferase YP_061670.1 617999 D 281090 CDS YP_061671.1 50954383 2940505 619232..620170 1 NC_006087.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 620170 argF 2940505 argF Leifsonia xyli subsp. xyli str. CTCB07 ornithine carbamoyltransferase YP_061671.1 619232 D 281090 CDS YP_061672.1 50954384 2939278 620203..621630 1 NC_006087.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 621630 argH 2939278 argH Leifsonia xyli subsp. xyli str. CTCB07 argininosuccinate lyase YP_061672.1 620203 D 281090 CDS YP_061673.1 50954385 2939179 621630..621740 1 NC_006087.1 hypothetical protein 621740 2939179 Lxx06090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061673.1 621630 D 281090 CDS YP_061674.1 50954386 2939192 621730..622371 1 NC_006087.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 622371 alkA 2939192 alkA Leifsonia xyli subsp. xyli str. CTCB07 3-methyladenine DNA glycosylase YP_061674.1 621730 D 281090 CDS YP_061675.1 50954387 2938321 complement(622773..623210) 1 NC_006087.1 hypothetical protein 623210 2938321 Lxx06110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061675.1 622773 R 281090 CDS YP_061676.1 50954388 2939358 complement(623235..623438) 1 NC_006087.1 hypothetical protein 623438 2939358 Lxx06120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061676.1 623235 R 281090 CDS YP_061677.1 50954389 2938818 complement(623435..624064) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 624064 2938818 Lxx06130 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061677.1 623435 R 281090 CDS YP_061678.1 50954390 2938855 624196..625524 1 NC_006087.1 identified by sequence similarity; tyrosyl-tRNA synthetase 625524 tyrS 2938855 tyrS Leifsonia xyli subsp. xyli str. CTCB07 tyrosyl-tRNA synthetase YP_061678.1 624196 D 281090 CDS YP_061679.1 50954391 2938576 625562..625711 1 NC_006087.1 hypothetical protein 625711 2938576 Lxx06150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061679.1 625562 D 281090 CDS YP_061680.1 50954392 2939730 625754..626809 1 NC_006087.1 identified by sequence similarity; galactosyltransferase 626809 2939730 Lxx06160 Leifsonia xyli subsp. xyli str. CTCB07 galactosyltransferase YP_061680.1 625754 D 281090 CDS YP_061681.1 50954393 2939036 626861..627634 1 NC_006087.1 identified by sequence similarity; hemolysin 627634 tlyA 2939036 tlyA Leifsonia xyli subsp. xyli str. CTCB07 hemolysin YP_061681.1 626861 D 281090 CDS YP_061682.1 50954394 2939185 complement(627651..627947) 1 NC_006087.1 hypothetical protein 627947 2939185 Lxx06180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061682.1 627651 R 281090 CDS YP_061683.1 50954395 2938399 complement(628007..628879) 1 NC_006087.1 identified by sequence similarity; flagellar hook-associated protein 3 628879 flgL 2938399 flgL Leifsonia xyli subsp. xyli str. CTCB07 flagellar hook-associated protein 3 YP_061683.1 628007 R 281090 CDS YP_061684.1 50954396 2939183 complement(630356..630694) 1 NC_006087.1 hypothetical protein 630694 2939183 Lxx06210 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061684.1 630356 R 281090 CDS YP_061685.1 50954397 2938724 632192..633010 1 NC_006087.1 identified by sequence similarity; RNA polymerase, sigma factor 633010 fliA 2938724 fliA Leifsonia xyli subsp. xyli str. CTCB07 RNA polymerase, sigma factor YP_061685.1 632192 D 281090 CDS YP_061686.1 50954398 2939055 633236..634069 1 NC_006087.1 identified by sequence similarity; flagellin-like protein 634069 fliC 2939055 fliC Leifsonia xyli subsp. xyli str. CTCB07 flagellin-like protein YP_061686.1 633236 D 281090 CDS YP_061687.1 50954399 2939954 635643..636077 1 NC_006087.1 identified by sequence similarity; flagellar-like protein 636077 fliS 2939954 fliS Leifsonia xyli subsp. xyli str. CTCB07 flagellar-like protein YP_061687.1 635643 D 281090 CDS YP_061688.1 50954400 2939007 636106..636345 1 NC_006087.1 hypothetical protein 636345 2939007 Lxx06290 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061688.1 636106 D 281090 CDS YP_061689.1 50954401 2939245 636509..636865 1 NC_006087.1 hypothetical protein 636865 2939245 Lxx06300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061689.1 636509 D 281090 CDS YP_061690.1 50954402 2938831 636862..637260 1 NC_006087.1 identified by sequence similarity; flagellar basal-body rod protein 637260 flgC 2938831 flgC Leifsonia xyli subsp. xyli str. CTCB07 flagellar basal-body rod protein YP_061690.1 636862 D 281090 CDS YP_061691.1 50954403 2940448 637260..637574 1 NC_006087.1 identified by sequence similarity; flagellar basal-body protein 637574 fliE 2940448 fliE Leifsonia xyli subsp. xyli str. CTCB07 flagellar basal-body protein YP_061691.1 637260 D 281090 CDS YP_061692.1 50954404 2939574 637574..638899 1 NC_006087.1 identified by sequence similarity; flagellar M-ring protein 638899 fliF 2939574 fliF Leifsonia xyli subsp. xyli str. CTCB07 flagellar M-ring protein YP_061692.1 637574 D 281090 CDS YP_061693.1 50954405 2938531 639129..640169 1 NC_006087.1 identified by sequence similarity; flagellar motor switch protein 640169 fliG 2938531 fliG Leifsonia xyli subsp. xyli str. CTCB07 flagellar motor switch protein YP_061693.1 639129 D 281090 CDS YP_061694.1 50954406 2938535 640159..640716 1 NC_006087.1 hypothetical protein 640716 2938535 Lxx06350 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061694.1 640159 D 281090 CDS YP_061695.1 50954407 2939448 640713..642038 1 NC_006087.1 identified by sequence similarity; flagellum-like ATP synthase 642038 fliI 2939448 fliI Leifsonia xyli subsp. xyli str. CTCB07 flagellum-like ATP synthase YP_061695.1 640713 D 281090 CDS YP_061696.1 50954408 2938686 644614..644886 1 NC_006087.1 identified by sequence similarity; flagellar hook assembly protein 644886 flgD 2938686 flgD Leifsonia xyli subsp. xyli str. CTCB07 flagellar hook assembly protein YP_061696.1 644614 D 281090 CDS YP_061697.1 50954409 2939645 644883..645041 1 NC_006087.1 hypothetical protein 645041 2939645 Lxx06410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061697.1 644883 D 281090 CDS YP_061698.1 50954410 2938316 645064..646236 1 NC_006087.1 identified by sequence similarity; flagellar hook protein 646236 flgE 2938316 flgE Leifsonia xyli subsp. xyli str. CTCB07 flagellar hook protein YP_061698.1 645064 D 281090 CDS YP_061699.1 50954411 2939810 646319..646549 1 NC_006087.1 identified by sequence similarity; motility protein 646549 fliO 2939810 fliO Leifsonia xyli subsp. xyli str. CTCB07 motility protein YP_061699.1 646319 D 281090 CDS YP_061700.1 50954412 2939525 646602..647489 1 NC_006087.1 identified by sequence similarity; chemotaxis protein MotA 647489 motA 2939525 motA Leifsonia xyli subsp. xyli str. CTCB07 chemotaxis protein MotA YP_061700.1 646602 D 281090 CDS YP_061701.1 50954413 2939677 648332..648589 1 NC_006087.1 identified by sequence similarity; carbon storage regulator CsrA 648589 csrA 2939677 csrA Leifsonia xyli subsp. xyli str. CTCB07 carbon storage regulator CsrA YP_061701.1 648332 D 281090 CDS YP_061702.1 50954414 2940195 complement(650730..651515) 1 NC_006087.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 651515 2940195 Lxx06510 Leifsonia xyli subsp. xyli str. CTCB07 enoyl-CoA hydratase YP_061702.1 650730 R 281090 CDS YP_061703.1 50954415 2939004 complement(651556..652500) 1 NC_006087.1 identified by sequence similarity; arginase 652500 arg1 2939004 arg1 Leifsonia xyli subsp. xyli str. CTCB07 arginase YP_061703.1 651556 R 281090 CDS YP_061704.1 50954416 2938870 complement(654210..655118) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 655118 2938870 Lxx06550 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061704.1 654210 R 281090 CDS YP_061705.1 50954417 2939796 655454..655921 1 NC_006087.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 655921 msrB 2939796 msrB Leifsonia xyli subsp. xyli str. CTCB07 methionine sulfoxide reductase B YP_061705.1 655454 D 281090 CDS YP_061706.1 50954418 2939157 655918..656427 1 NC_006087.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 656427 msrA 2939157 msrA Leifsonia xyli subsp. xyli str. CTCB07 methionine sulfoxide reductase A YP_061706.1 655918 D 281090 CDS YP_061707.1 50954419 2938864 656847..657632 1 NC_006087.1 identified by sequence similarity; DeoR family transcriptional regulator 657632 2938864 Lxx06590 Leifsonia xyli subsp. xyli str. CTCB07 DeoR family transcriptional regulator YP_061707.1 656847 D 281090 CDS YP_061708.1 50954420 2940125 657629..658576 1 NC_006087.1 identified by sequence similarity; 1-phosphofructokinase 658576 fruK 2940125 fruK Leifsonia xyli subsp. xyli str. CTCB07 1-phosphofructokinase YP_061708.1 657629 D 281090 CDS YP_061709.1 50954421 2938678 658609..660672 1 NC_006087.1 identified by sequence similarity; PTS system, fructose-specific permease, transmembrane protein 660672 2938678 Lxx06600 Leifsonia xyli subsp. xyli str. CTCB07 PTS system, fructose-specific permease, transmembrane protein YP_061709.1 658609 D 281090 CDS YP_061710.1 50954422 2938774 660701..661093 1 NC_006087.1 hypothetical protein 661093 2938774 Lxx06610 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061710.1 660701 D 281090 CDS YP_061711.1 50954423 2939708 661171..661854 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 661854 gntR 2939708 gntR Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_061711.1 661171 D 281090 CDS YP_061712.1 50954424 2939186 complement(663113..664255) 1 NC_006087.1 identified by sequence similarity; glycerate kinase 664255 pgk 2939186 pgk Leifsonia xyli subsp. xyli str. CTCB07 glycerate kinase YP_061712.1 663113 R 281090 CDS YP_061713.1 50954425 2939188 complement(665543..666343) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 666343 2939188 Lxx06680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061713.1 665543 R 281090 CDS YP_061714.1 50954426 2938994 complement(666340..666657) 1 NC_006087.1 identified by sequence similarity; oxidoreductase 666657 2938994 Lxx06690 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_061714.1 666340 R 281090 CDS YP_061715.1 50954427 2939142 668200..669117 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 669117 malF 2939142 malF Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061715.1 668200 D 281090 CDS YP_061716.1 50954428 2939203 669114..669977 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 669977 malG 2939203 malG Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061716.1 669114 D 281090 CDS YP_061717.1 50954429 2938952 670004..671191 1 NC_006087.1 identified by sequence similarity; ROK family transcriptional regulator 671191 2938952 Lxx06740 Leifsonia xyli subsp. xyli str. CTCB07 ROK family transcriptional regulator YP_061717.1 670004 D 281090 CDS YP_061718.1 50954430 2938362 672631..674400 1 NC_006087.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 674400 metG 2938362 metG Leifsonia xyli subsp. xyli str. CTCB07 methionyl-tRNA synthetase YP_061718.1 672631 D 281090 CDS YP_061719.1 50954431 2940204 676318..678006 1 NC_006087.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 678006 argS 2940204 argS Leifsonia xyli subsp. xyli str. CTCB07 arginyl-tRNA synthetase YP_061719.1 676318 D 281090 CDS YP_061720.1 50954432 2939861 678099..678797 1 NC_006087.1 hypothetical protein 678797 2939861 Lxx06820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061720.1 678099 D 281090 CDS YP_061721.1 50954433 2939595 complement(679374..680156) 1 NC_006087.1 identified by sequence similarity; glycosyltransferase 680156 2939595 Lxx06832 Leifsonia xyli subsp. xyli str. CTCB07 glycosyltransferase YP_061721.1 679374 R 281090 CDS YP_061722.1 50954434 2938912 complement(680157..681380) 1 NC_006087.1 identified by sequence similarity; major facilitator superfamily H(+) antiporter 681380 2938912 Lxx06835 Leifsonia xyli subsp. xyli str. CTCB07 major facilitator superfamily H(+) antiporter YP_061722.1 680157 R 281090 CDS YP_061723.1 50954435 2939283 complement(681377..682000) 1 NC_006087.1 identified by sequence similarity; iron-sulfur flavoprotein 682000 2939283 Lxx06840 Leifsonia xyli subsp. xyli str. CTCB07 iron-sulfur flavoprotein YP_061723.1 681377 R 281090 CDS YP_061724.1 50954436 2939837 685906..687321 1 NC_006087.1 identified by sequence similarity; diaminopimelate decarboxylase 687321 lysA 2939837 lysA Leifsonia xyli subsp. xyli str. CTCB07 diaminopimelate decarboxylase YP_061724.1 685906 D 281090 CDS YP_061725.1 50954437 2939000 687318..688673 1 NC_006087.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 688673 thrA 2939000 thrA Leifsonia xyli subsp. xyli str. CTCB07 homoserine dehydrogenase YP_061725.1 687318 D 281090 CDS YP_061726.1 50954438 2939191 688675..689787 1 NC_006087.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 689787 thrC 2939191 thrC Leifsonia xyli subsp. xyli str. CTCB07 threonine synthase YP_061726.1 688675 D 281090 CDS YP_061727.1 50954439 2939143 689787..690758 1 NC_006087.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 690758 thrB 2939143 thrB Leifsonia xyli subsp. xyli str. CTCB07 homoserine kinase YP_061727.1 689787 D 281090 CDS YP_061728.1 50954440 2939009 690967..693105 1 NC_006087.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 693105 rho 2939009 rho Leifsonia xyli subsp. xyli str. CTCB07 transcription termination factor Rho YP_061728.1 690967 D 281090 CDS YP_061729.1 50954441 2939035 693192..694268 1 NC_006087.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 694268 prfA 2939035 prfA Leifsonia xyli subsp. xyli str. CTCB07 peptide chain release factor 1 YP_061729.1 693192 D 281090 CDS YP_061730.1 50954442 2938999 complement(694435..694998) 1 NC_006087.1 identified by sequence similarity; serine O-acetyltransferase 694998 cysE 2938999 cysE Leifsonia xyli subsp. xyli str. CTCB07 serine O-acetyltransferase YP_061730.1 694435 R 281090 CDS YP_061731.1 50954443 2940317 695952..696830 1 NC_006087.1 identified by sequence similarity; methyltransferase 696830 hemK 2940317 hemK Leifsonia xyli subsp. xyli str. CTCB07 methyltransferase YP_061731.1 695952 D 281090 CDS YP_061732.1 50954444 2939027 complement(696849..697481) 1 NC_006087.1 identified by sequence similarity; hydrolase 697481 2939027 Lxx06960 Leifsonia xyli subsp. xyli str. CTCB07 hydrolase YP_061732.1 696849 R 281090 CDS YP_061733.1 50954445 2938865 697560..698258 1 NC_006087.1 identified by sequence similarity; translation factor 698258 2938865 Lxx06950 Leifsonia xyli subsp. xyli str. CTCB07 translation factor YP_061733.1 697560 D 281090 CDS YP_061734.1 50954446 2938526 698263..699531 1 NC_006087.1 identified by sequence similarity; undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 699531 rfe 2938526 rfe Leifsonia xyli subsp. xyli str. CTCB07 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YP_061734.1 698263 D 281090 CDS YP_061735.1 50954447 2938589 699528..700034 1 NC_006087.1 identified by sequence similarity; hypothetical protein 700034 2938589 Lxx06980 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061735.1 699528 D 281090 CDS YP_061736.1 50954448 2938504 700205..701002 1 NC_006087.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 701002 atpB 2938504 atpB Leifsonia xyli subsp. xyli str. CTCB07 ATP synthase F0F1 subunit A YP_061736.1 700205 D 281090 CDS YP_061737.1 50954449 2939442 701054..701275 1 NC_006087.1 identified by sequence similarity; ATP synthase, C chain 701275 atpE 2939442 atpE Leifsonia xyli subsp. xyli str. CTCB07 ATP synthase, C chain YP_061737.1 701054 D 281090 CDS YP_061738.1 50954450 2938593 701308..701880 1 NC_006087.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 701880 atpF 2938593 atpF Leifsonia xyli subsp. xyli str. CTCB07 ATP synthase F0F1 subunit B YP_061738.1 701308 D 281090 CDS YP_061739.1 50954451 2939780 701880..702671 1 NC_006087.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 702671 atpH 2939780 atpH Leifsonia xyli subsp. xyli str. CTCB07 ATP synthase F0F1 subunit delta YP_061739.1 701880 D 281090 CDS YP_061740.1 50954452 2939124 702698..704335 1 NC_006087.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 704335 atpA 2939124 atpA Leifsonia xyli subsp. xyli str. CTCB07 ATP synthase F0F1 subunit alpha YP_061740.1 702698 D 281090 CDS YP_061741.1 50954453 2938780 704379..705278 1 NC_006087.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 705278 atpG 2938780 atpG Leifsonia xyli subsp. xyli str. CTCB07 ATP synthase F0F1 subunit gamma YP_061741.1 704379 D 281090 CDS YP_061742.1 50954454 2938630 705304..706767 1 NC_006087.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 706767 atpD 2938630 atpD Leifsonia xyli subsp. xyli str. CTCB07 ATP synthase F0F1 subunit beta YP_061742.1 705304 D 281090 CDS YP_061743.1 50954455 2938936 706770..707030 1 NC_006087.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 707030 atpC 2938936 atpC Leifsonia xyli subsp. xyli str. CTCB07 ATP synthase F0F1 subunit epsilon YP_061743.1 706770 D 281090 CDS YP_061744.1 50954456 2939618 707053..707589 1 NC_006087.1 identified by sequence similarity; hypothetical protein 707589 2939618 Lxx07070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061744.1 707053 D 281090 CDS YP_061745.1 50954457 2939265 707591..708385 1 NC_006087.1 identified by sequence similarity; hypothetical protein 708385 2939265 Lxx07080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061745.1 707591 D 281090 CDS YP_061746.1 50954458 2939012 complement(708405..709022) 1 NC_006087.1 identified by sequence similarity; DNA-3-methyladenine glycosydase I 709022 tagI 2939012 tagI Leifsonia xyli subsp. xyli str. CTCB07 DNA-3-methyladenine glycosydase I YP_061746.1 708405 R 281090 CDS YP_061747.1 50954459 2939600 complement(709019..709516) 1 NC_006087.1 identified by sequence similarity; methylated-DNA-protein-cysteine S-methyltransferase 709516 ada 2939600 ada Leifsonia xyli subsp. xyli str. CTCB07 methylated-DNA-protein-cysteine S-methyltransferase YP_061747.1 709019 R 281090 CDS YP_061748.1 50954460 2940611 complement(711710..713461) 1 NC_006087.1 identified by sequence similarity; peptidase 713461 2940611 Lxx07120 Leifsonia xyli subsp. xyli str. CTCB07 peptidase YP_061748.1 711710 R 281090 CDS YP_061749.1 50954461 2940389 714416..715414 1 NC_006087.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 715414 nusA 2940389 nusA Leifsonia xyli subsp. xyli str. CTCB07 transcription elongation factor NusA YP_061749.1 714416 D 281090 CDS YP_061750.1 50954462 2938940 715468..715728 1 NC_006087.1 identified by sequence similarity; hypothetical protein 715728 2938940 Lxx07140 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061750.1 715468 D 281090 CDS YP_061751.1 50954463 2939193 715801..718551 1 NC_006087.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 718551 infB 2939193 infB Leifsonia xyli subsp. xyli str. CTCB07 translation initiation factor IF-2 YP_061751.1 715801 D 281090 CDS YP_061752.1 50954464 2939189 718628..719056 1 NC_006087.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 719056 rbfA 2939189 rbfA Leifsonia xyli subsp. xyli str. CTCB07 ribosome-binding factor A YP_061752.1 718628 D 281090 CDS YP_061753.1 50954465 2938884 complement(721323..722192) 1 NC_006087.1 identified by sequence similarity; adenine glycosylase 722192 nth 2938884 nth Leifsonia xyli subsp. xyli str. CTCB07 adenine glycosylase YP_061753.1 721323 R 281090 CDS YP_061754.1 50954466 2939547 complement(722246..723304) 1 NC_006087.1 identified by sequence similarity; 2-dehydropantoate 2-reductase 723304 panE 2939547 panE Leifsonia xyli subsp. xyli str. CTCB07 2-dehydropantoate 2-reductase YP_061754.1 722246 R 281090 CDS YP_061755.1 50954467 2939199 complement(723391..723900) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 723900 2939199 Lxx07210 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061755.1 723391 R 281090 CDS YP_061756.1 50954468 2938996 complement(724280..724969) 1 NC_006087.1 identified by sequence similarity; phosphonoacetaldehyde hydrolase 724969 2938996 Lxx07220 Leifsonia xyli subsp. xyli str. CTCB07 phosphonoacetaldehyde hydrolase YP_061756.1 724280 R 281090 CDS YP_061757.1 50954469 2940282 complement(724966..725730) 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 725730 yhfR 2940282 yhfR Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_061757.1 724966 R 281090 CDS YP_061758.1 50954470 2940308 complement(727347..727646) 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 727646 2940308 Lxx07247 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_061758.1 727347 R 281090 CDS YP_061759.1 50954471 2938897 728021..728929 1 NC_006087.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 728929 truB 2938897 truB Leifsonia xyli subsp. xyli str. CTCB07 tRNA pseudouridine synthase B YP_061759.1 728021 D 281090 CDS YP_061760.1 50954472 2939692 729374..729856 1 NC_006087.1 identified by sequence similarity; hypothetical protein 729856 2939692 Lxx07270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061760.1 729374 D 281090 CDS YP_061761.1 50954473 2939206 729853..730797 1 NC_006087.1 identified by sequence similarity; riboflavin kinase/ FMN adenyltransferase 730797 ribF 2939206 ribF Leifsonia xyli subsp. xyli str. CTCB07 riboflavin kinase/ FMN adenyltransferase YP_061761.1 729853 D 281090 CDS YP_061762.1 50954474 2939771 730794..732005 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 732005 2939771 Lxx07290 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061762.1 730794 D 281090 CDS YP_061763.1 50954475 2939044 732087..733307 1 NC_006087.1 identified by sequence similarity; transcriptional regulator 733307 sorC 2939044 sorC Leifsonia xyli subsp. xyli str. CTCB07 transcriptional regulator YP_061763.1 732087 D 281090 CDS YP_061764.1 50954476 2940541 735478..736443 1 NC_006087.1 identified by sequence similarity; ABC transporter ferrichrome-binding protein 736443 2940541 Lxx07340 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ferrichrome-binding protein YP_061764.1 735478 D 281090 CDS YP_061765.1 50954477 2939019 738285..738791 1 NC_006087.1 identified by sequence similarity; hypothetical protein 738791 2939019 Lxx07390 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061765.1 738285 D 281090 CDS YP_061766.1 50954478 2940488 738831..739445 1 NC_006087.1 identified by sequence similarity; hypothetical protein 739445 2940488 Lxx07400 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061766.1 738831 D 281090 CDS YP_061767.1 50954479 2939324 complement(739510..740037) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 740037 2939324 Lxx07410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061767.1 739510 R 281090 CDS YP_061768.1 50954480 2938343 complement(740039..740317) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 740317 2938343 Lxx07420 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061768.1 740039 R 281090 CDS YP_061769.1 50954481 2939744 740376..740600 1 NC_006087.1 identified by sequence similarity; heavy-metal-associated protein 740600 2939744 Lxx07430 Leifsonia xyli subsp. xyli str. CTCB07 heavy-metal-associated protein YP_061769.1 740376 D 281090 CDS YP_061770.1 50954482 2938534 740597..742729 1 NC_006087.1 identified by sequence similarity; cation-transporting P-type ATPase 742729 ctpA 2938534 ctpA Leifsonia xyli subsp. xyli str. CTCB07 cation-transporting P-type ATPase YP_061770.1 740597 D 281090 CDS YP_061771.1 50954483 2940589 742878..743441 1 NC_006087.1 identified by sequence similarity; phage-related integrase 743441 2940589 Lxx07450 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_061771.1 742878 D 281090 CDS YP_061772.1 50954484 2939682 complement(743797..745311) 1 NC_006087.1 identified by sequence similarity; hemagglutinin/hemolysin-like protein 745311 2939682 Lxx07470 Leifsonia xyli subsp. xyli str. CTCB07 hemagglutinin/hemolysin-like protein YP_061772.1 743797 R 281090 CDS YP_061773.1 50954485 2939985 complement(745658..745906) 1 NC_006087.1 identified by sequence similarity; glutaredoxin 745906 grx 2939985 grx Leifsonia xyli subsp. xyli str. CTCB07 glutaredoxin YP_061773.1 745658 R 281090 CDS YP_061774.1 50954486 2938632 746450..747508 1 NC_006087.1 identified by sequence similarity; secreted protein 747508 2938632 Lxx07485 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_061774.1 746450 D 281090 CDS YP_061775.1 50954487 2939167 748683..750848 1 NC_006087.1 identified by sequence similarity; ATP-dependent RNA helicase 750848 2939167 Lxx07490 Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent RNA helicase YP_061775.1 748683 D 281090 CDS YP_061776.1 50954488 2938460 complement(751191..751829) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 751829 2938460 Lxx07500 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_061776.1 751191 R 281090 CDS YP_061777.1 50954489 2939345 complement(751826..753016) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 753016 2939345 Lxx07510 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_061777.1 751826 R 281090 CDS YP_061778.1 50954490 2939859 753935..755011 1 NC_006087.1 identified by sequence similarity; 6-phosphofructokinase 755011 pfkA 2939859 pfkA Leifsonia xyli subsp. xyli str. CTCB07 6-phosphofructokinase YP_061778.1 753935 D 281090 CDS YP_061779.1 50954491 2939577 755048..756013 1 NC_006087.1 identified by sequence similarity; zinc-binding dehydrogenase 756013 2939577 Lxx07540 Leifsonia xyli subsp. xyli str. CTCB07 zinc-binding dehydrogenase YP_061779.1 755048 D 281090 CDS YP_061780.1 50954492 2938598 756104..756415 1 NC_006087.1 hypothetical protein 756415 2938598 Lxx07550 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061780.1 756104 D 281090 CDS YP_061781.1 50954493 2939008 complement(757483..758238) 1 NC_006087.1 identified by sequence similarity; LysR family transcriptional regulator 758238 2939008 Lxx07580 Leifsonia xyli subsp. xyli str. CTCB07 LysR family transcriptional regulator YP_061781.1 757483 R 281090 CDS YP_061782.1 50954494 2939194 758273..758656 1 NC_006087.1 identified by sequence similarity; hypothetical protein 758656 2939194 Lxx07570 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061782.1 758273 D 281090 CDS YP_061783.1 50954495 2939177 complement(758876..759088) 1 NC_006087.1 hypothetical protein 759088 2939177 Lxx07610 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061783.1 758876 R 281090 CDS YP_061784.1 50954496 2940058 complement(759116..761089) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 761089 2940058 Lxx07620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061784.1 759116 R 281090 CDS YP_061785.1 50954497 2940157 complement(762245..762373) 1 NC_006087.1 hypothetical protein 762373 2940157 Lxx07640 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061785.1 762245 R 281090 CDS YP_061786.1 50954498 2938861 complement(762862..763218) 1 NC_006087.1 hypothetical protein 763218 2938861 Lxx07650 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061786.1 762862 R 281090 CDS YP_061787.1 50954499 2939995 complement(763248..763502) 1 NC_006087.1 hypothetical protein 763502 2939995 Lxx07660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061787.1 763248 R 281090 CDS YP_061788.1 50954500 2938853 764461..764760 1 NC_006087.1 hypothetical protein 764760 2938853 Lxx07670 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061788.1 764461 D 281090 CDS YP_061789.1 50954501 2939999 765081..767606 1 NC_006087.1 identified by sequence similarity; transfer complex protein 767606 trsE 2939999 trsE Leifsonia xyli subsp. xyli str. CTCB07 transfer complex protein YP_061789.1 765081 D 281090 CDS YP_061790.1 50954502 2938407 767879..769723 1 NC_006087.1 identified by sequence similarity; conjugal plasmid transfer, ATPase 769723 trsK 2938407 trsK Leifsonia xyli subsp. xyli str. CTCB07 conjugal plasmid transfer, ATPase YP_061790.1 767879 D 281090 CDS YP_061791.1 50954503 2938883 complement(771331..772905) 1 NC_006087.1 identified by sequence similarity; mobilization protein 772905 rlx 2938883 rlx Leifsonia xyli subsp. xyli str. CTCB07 mobilization protein YP_061791.1 771331 R 281090 CDS YP_061792.1 50954504 2939959 complement(773428..773811) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 773811 2939959 Lxx07715 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061792.1 773428 R 281090 CDS YP_061793.1 50954505 2939484 775252..776277 1 NC_006087.1 identified by sequence similarity; secreted protein 776277 2939484 Lxx07740 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_061793.1 775252 D 281090 CDS YP_061794.1 50954506 2939326 778148..779638 1 NC_006087.1 identified by sequence similarity; endopolygalacturonase 779638 pglA 2939326 pglA Leifsonia xyli subsp. xyli str. CTCB07 endopolygalacturonase YP_061794.1 778148 D 281090 CDS YP_061795.1 50954507 2939892 780192..780614 1 NC_006087.1 identified by sequence similarity; hypothetical protein 780614 2939892 Lxx07755 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061795.1 780192 D 281090 CDS YP_061796.1 50954508 2939100 781177..782388 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 782388 tnp 2939100 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_061796.1 781177 D 281090 CDS YP_061797.1 50954509 2939067 783238..783435 1 NC_006087.1 hypothetical protein 783435 2939067 Lxx07780 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061797.1 783238 D 281090 CDS YP_061798.1 50954510 2938403 complement(786215..787171) 1 NC_006087.1 identified by sequence similarity; lysozyme 787171 2938403 Lxx07795 Leifsonia xyli subsp. xyli str. CTCB07 lysozyme YP_061798.1 786215 R 281090 CDS YP_061799.1 50954511 2940331 complement(789913..790989) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 790989 2940331 Lxx07798 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061799.1 789913 R 281090 CDS YP_061800.1 50954512 2940012 791454..792854 1 NC_006087.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 792854 tig 2940012 tig Leifsonia xyli subsp. xyli str. CTCB07 trigger factor YP_061800.1 791454 D 281090 CDS YP_061801.1 50954513 2939249 792928..793413 1 NC_006087.1 identified by sequence similarity; hypothetical protein 793413 2939249 Lxx07840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061801.1 792928 D 281090 CDS YP_061802.1 50954514 2939025 793536..794129 1 NC_006087.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 794129 clpP 2939025 clpP Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent Clp protease proteolytic subunit YP_061802.1 793536 D 281090 CDS YP_061803.1 50954515 2938711 794171..794842 1 NC_006087.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 794842 clpP 2938711 clpP Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent Clp protease proteolytic subunit YP_061803.1 794171 D 281090 CDS YP_061804.1 50954516 2939982 795003..796277 1 NC_006087.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 796277 clpX 2939982 clpX Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent protease ATP-binding subunit ClpX YP_061804.1 795003 D 281090 CDS YP_061805.1 50954517 2938602 complement(798555..798821) 1 NC_006087.1 hypothetical protein 798821 2938602 Lxx07900 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061805.1 798555 R 281090 CDS YP_061806.1 50954518 2938607 complement(798821..799291) 1 NC_006087.1 identified by sequence similarity; acetyltransferase 799291 2938607 Lxx07910 Leifsonia xyli subsp. xyli str. CTCB07 acetyltransferase YP_061806.1 798821 R 281090 CDS YP_061807.1 50954519 2940441 complement(799331..799756) 1 NC_006087.1 identified by sequence similarity; acetyltransferase 799756 2940441 Lxx07920 Leifsonia xyli subsp. xyli str. CTCB07 acetyltransferase YP_061807.1 799331 R 281090 CDS YP_061808.1 50954520 2939543 complement(799774..802362) 1 NC_006087.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 802362 valS 2939543 valS Leifsonia xyli subsp. xyli str. CTCB07 valyl-tRNA synthetase YP_061808.1 799774 R 281090 CDS YP_061809.1 50954521 2939431 803870..804619 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 804619 2939431 Lxx07960 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_061809.1 803870 D 281090 CDS YP_061810.1 50954522 2938988 804660..808019 1 NC_006087.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 808019 ileS 2938988 ileS Leifsonia xyli subsp. xyli str. CTCB07 isoleucyl-tRNA synthetase YP_061810.1 804660 D 281090 CDS YP_061811.1 50954523 2940436 808016..809383 1 NC_006087.1 identified by sequence similarity; folylpolyglutamate synthase 809383 folC 2940436 folC Leifsonia xyli subsp. xyli str. CTCB07 folylpolyglutamate synthase YP_061811.1 808016 D 281090 CDS YP_061812.1 50954524 2939460 809380..809793 1 NC_006087.1 identified by sequence similarity; hypothetical protein 809793 2939460 Lxx07990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061812.1 809380 D 281090 CDS YP_061813.1 50954525 2939149 809790..810212 1 NC_006087.1 identified by sequence similarity; nucleoside diphosphate kinase 810212 ndk 2939149 ndk Leifsonia xyli subsp. xyli str. CTCB07 nucleoside diphosphate kinase YP_061813.1 809790 D 281090 CDS YP_061814.1 50954526 2938280 complement(810360..810977) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 810977 2938280 Lxx08010 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061814.1 810360 R 281090 CDS YP_061815.1 50954527 2939244 811262..813805 1 NC_006087.1 identified by sequence similarity; ribonuclease G 813805 rng 2939244 rng Leifsonia xyli subsp. xyli str. CTCB07 ribonuclease G YP_061815.1 811262 D 281090 CDS YP_061816.1 50954528 2938836 complement(813833..814102) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 814102 2938836 Lxx08030 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061816.1 813833 R 281090 CDS YP_061817.2 161760709 2939163 814367..814675 1 NC_006087.1 identified by sequence similarity; 50S ribosomal protein L21 814675 rplU 2939163 rplU Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L21 YP_061817.2 814367 D 281090 CDS YP_061818.1 50954530 2940117 814705..814962 1 NC_006087.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 814962 rpmA 2940117 rpmA Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L27 YP_061818.1 814705 D 281090 CDS YP_061819.1 50954531 2940019 815050..816594 1 NC_006087.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 816594 obgE 2940019 obgE Leifsonia xyli subsp. xyli str. CTCB07 GTPase ObgE YP_061819.1 815050 D 281090 CDS YP_061820.1 50954532 2938837 816591..817403 1 NC_006087.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 817403 proB 2938837 proB Leifsonia xyli subsp. xyli str. CTCB07 gamma-glutamyl kinase YP_061820.1 816591 D 281090 CDS YP_061821.1 50954533 2940354 817414..818679 1 NC_006087.1 identified by sequence similarity; gamma-glutamylphosphate reductase 818679 proA 2940354 proA Leifsonia xyli subsp. xyli str. CTCB07 gamma-glutamylphosphate reductase YP_061821.1 817414 D 281090 CDS YP_061822.1 50954534 2938777 818738..818974 1 NC_006087.1 hypothetical protein 818974 2938777 Lxx08090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061822.1 818738 D 281090 CDS YP_061823.1 50954535 2939614 818986..819588 1 NC_006087.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 819588 nadD 2939614 nadD Leifsonia xyli subsp. xyli str. CTCB07 nicotinic acid mononucleotide adenylyltransferase YP_061823.1 818986 D 281090 CDS YP_061824.1 50954536 2939489 819585..820877 1 NC_006087.1 identified by sequence similarity; hypothetical protein 820877 2939489 Lxx08110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061824.1 819585 D 281090 CDS YP_061825.1 50954537 2938401 820927..821298 1 NC_006087.1 identified by sequence similarity; hypothetical protein 821298 2938401 Lxx08120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061825.1 820927 D 281090 CDS YP_061826.1 50954538 2939175 821360..821605 1 NC_006087.1 identified by sequence similarity; hypothetical protein 821605 2939175 Lxx08130 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061826.1 821360 D 281090 CDS YP_061827.1 50954539 2939732 821921..823222 1 NC_006087.1 identified by sequence similarity; LytR family transcriptional regulator 823222 lytR 2939732 lytR Leifsonia xyli subsp. xyli str. CTCB07 LytR family transcriptional regulator YP_061827.1 821921 D 281090 CDS YP_061828.1 50954540 2939310 823465..824838 1 NC_006087.1 identified by sequence similarity; transmembrane efflux pump 824838 2939310 Lxx08160 Leifsonia xyli subsp. xyli str. CTCB07 transmembrane efflux pump YP_061828.1 823465 D 281090 CDS YP_061829.1 50954541 2939195 complement(824820..825659) 1 NC_006087.1 identified by sequence similarity; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 825659 menA 2939195 menA Leifsonia xyli subsp. xyli str. CTCB07 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_061829.1 824820 R 281090 CDS YP_061830.1 50954542 2939960 825804..826355 1 NC_006087.1 identified by sequence similarity; hypothetical protein 826355 2939960 Lxx08180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061830.1 825804 D 281090 CDS YP_061831.1 50954543 2938722 complement(826537..827373) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 827373 2938722 Lxx08190 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061831.1 826537 R 281090 CDS YP_061832.1 50954544 2939331 complement(827625..828701) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 828701 2939331 Lxx08200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061832.1 827625 R 281090 CDS YP_061833.1 50954545 2939024 complement(831612..832508) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 832508 2939024 Lxx08270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061833.1 831612 R 281090 CDS YP_061834.1 50954546 2938286 832597..833283 1 NC_006087.1 identified by sequence similarity; hydrolase 833283 2938286 Lxx08260 Leifsonia xyli subsp. xyli str. CTCB07 hydrolase YP_061834.1 832597 D 281090 CDS YP_061835.1 50954547 2940031 833280..834299 1 NC_006087.1 identified by sequence similarity; SAM-dependent methyltransferase 834299 gcd14 2940031 gcd14 Leifsonia xyli subsp. xyli str. CTCB07 SAM-dependent methyltransferase YP_061835.1 833280 D 281090 CDS YP_061836.1 50954548 2938477 834362..835279 1 NC_006087.1 identified by sequence similarity; peptidylprolyl isomerase 835279 aceF 2938477 aceF Leifsonia xyli subsp. xyli str. CTCB07 peptidylprolyl isomerase YP_061836.1 834362 D 281090 CDS YP_061837.1 50954549 2939155 835324..836352 1 NC_006087.1 identified by sequence similarity; hypothetical protein 836352 2939155 Lxx08300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061837.1 835324 D 281090 CDS YP_061838.1 50954550 2938869 836366..837319 1 NC_006087.1 identified by sequence similarity; DeoR family transcriptional regulator 837319 2938869 Lxx08310 Leifsonia xyli subsp. xyli str. CTCB07 DeoR family transcriptional regulator YP_061838.1 836366 D 281090 CDS YP_061839.1 50954551 2938405 837682..837912 1 NC_006087.1 identified by sequence similarity; Sec-independent protein translocase protein 837912 tatE 2938405 tatE Leifsonia xyli subsp. xyli str. CTCB07 Sec-independent protein translocase protein YP_061839.1 837682 D 281090 CDS YP_061840.1 50954552 2939515 837956..838708 1 NC_006087.1 identified by sequence similarity; sec-independent protein translocase protein TatC 838708 tatC 2939515 tatC Leifsonia xyli subsp. xyli str. CTCB07 sec-independent protein translocase protein TatC YP_061840.1 837956 D 281090 CDS YP_061841.1 50954553 2939258 838765..841200 1 NC_006087.1 identified by sequence similarity; ATP-dependent RNA helicase 841200 2939258 Lxx08340 Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent RNA helicase YP_061841.1 838765 D 281090 CDS YP_061842.1 50954554 2939902 841193..842791 1 NC_006087.1 identified by sequence similarity; apolipoprotein N-acyltransferase 842791 lnt 2939902 lnt Leifsonia xyli subsp. xyli str. CTCB07 apolipoprotein N-acyltransferase YP_061842.1 841193 D 281090 CDS YP_061843.1 50954555 2938669 complement(842816..843187) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 843187 2938669 Lxx08360 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061843.1 842816 R 281090 CDS YP_061844.1 50954556 2938601 complement(843959..844750) 1 NC_006087.1 identified by sequence similarity; secreted protein 844750 2938601 Lxx08370 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_061844.1 843959 R 281090 CDS YP_061845.1 50954557 2938723 complement(845049..845210) 1 NC_006087.1 hypothetical protein 845210 2938723 Lxx08380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061845.1 845049 R 281090 CDS YP_061846.1 50954558 2939819 845383..846153 1 NC_006087.1 identified by sequence similarity; short chain dehydrogenase 846153 fabG 2939819 fabG Leifsonia xyli subsp. xyli str. CTCB07 short chain dehydrogenase YP_061846.1 845383 D 281090 CDS YP_061847.1 50954559 2939970 846150..848177 1 NC_006087.1 identified by sequence similarity; acylaminoacyl peptidase 848177 yuxL 2939970 yuxL Leifsonia xyli subsp. xyli str. CTCB07 acylaminoacyl peptidase YP_061847.1 846150 D 281090 CDS YP_061848.1 50954560 2938619 complement(848112..849617) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 849617 2938619 Lxx08430 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061848.1 848112 R 281090 CDS YP_061849.1 50954561 2939774 complement(853644..853982) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 853982 2939774 Lxx08452 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061849.1 853644 R 281090 CDS YP_061850.1 50954562 2938599 complement(855421..855786) 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx4 855786 tnp 2938599 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx4 YP_061850.1 855421 R 281090 CDS YP_061851.1 50954563 2938910 857561..858787 1 NC_006087.1 identified by sequence similarity; NifR3/Smm1 family transcriptional regulator 858787 nifR3 2938910 nifR3 Leifsonia xyli subsp. xyli str. CTCB07 NifR3/Smm1 family transcriptional regulator YP_061851.1 857561 D 281090 CDS YP_061852.1 50954564 2940232 858777..860039 1 NC_006087.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 860039 dgt 2940232 dgt Leifsonia xyli subsp. xyli str. CTCB07 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_061852.1 858777 D 281090 CDS YP_061853.1 50954565 2940305 860119..860928 1 NC_006087.1 hypothetical protein 860928 2940305 Lxx08510 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061853.1 860119 D 281090 CDS YP_061854.1 50954566 2940030 860957..862819 1 NC_006087.1 synthesizes RNA primers at the replication forks; DNA primase 862819 dnaG 2940030 dnaG Leifsonia xyli subsp. xyli str. CTCB07 DNA primase YP_061854.1 860957 D 281090 CDS YP_061855.1 50954567 2940052 863022..864638 1 NC_006087.1 identified by sequence similarity; ABC transporter solute-binding protein 864638 oppA 2940052 oppA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter solute-binding protein YP_061855.1 863022 D 281090 CDS YP_061856.1 50954568 2939782 864732..865829 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 865829 dppB 2939782 dppB Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061856.1 864732 D 281090 CDS YP_061857.1 50954569 2938789 865912..866886 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 866886 dppC 2938789 dppC Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_061857.1 865912 D 281090 CDS YP_061858.1 50954570 2938568 866883..868571 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 868571 dppD 2938568 dppD Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_061858.1 866883 D 281090 CDS YP_061859.1 50954571 2938318 868581..869426 1 NC_006087.1 identified by sequence similarity; oligopeptide transporter 869426 oppF 2938318 oppF Leifsonia xyli subsp. xyli str. CTCB07 oligopeptide transporter YP_061859.1 868581 D 281090 CDS YP_061860.1 50954572 2938445 869554..870462 1 NC_006087.1 identified by sequence similarity; phosphoglycerate dehydrogenase 870462 serA 2938445 serA Leifsonia xyli subsp. xyli str. CTCB07 phosphoglycerate dehydrogenase YP_061860.1 869554 D 281090 CDS YP_061861.1 50954573 2939048 complement(871765..872331) 1 NC_006087.1 identified by sequence similarity; polypeptide deformylase 872331 def 2939048 def Leifsonia xyli subsp. xyli str. CTCB07 polypeptide deformylase YP_061861.1 871765 R 281090 CDS YP_061862.1 50954574 2938816 872403..873338 1 NC_006087.1 identified by sequence similarity; hypothetical protein 873338 2938816 Lxx08620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061862.1 872403 D 281090 CDS YP_061863.1 50954575 2938769 873429..874685 1 NC_006087.1 identified by sequence similarity; glucosyltransferase 874685 2938769 Lxx08630 Leifsonia xyli subsp. xyli str. CTCB07 glucosyltransferase YP_061863.1 873429 D 281090 CDS YP_061864.1 50954576 2940068 complement(874916..875401) 1 NC_006087.1 identified by sequence similarity; MutT-like domain-containing protein 875401 2940068 Lxx08650 Leifsonia xyli subsp. xyli str. CTCB07 MutT-like domain-containing protein YP_061864.1 874916 R 281090 CDS YP_061865.1 50954577 2938820 875457..875936 1 NC_006087.1 identified by sequence similarity; MutT/nudix family protein 875936 mutT3 2938820 mutT3 Leifsonia xyli subsp. xyli str. CTCB07 MutT/nudix family protein YP_061865.1 875457 D 281090 CDS YP_061866.1 50954578 2938432 876002..877714 1 NC_006087.1 identified by sequence similarity; DNA polymerase I 877714 2938432 Lxx08670 Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase I YP_061866.1 876002 D 281090 CDS YP_061867.1 50954579 2939602 877773..878624 1 NC_006087.1 identified by sequence similarity; hypothetical protein 878624 2939602 Lxx08680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061867.1 877773 D 281090 CDS YP_061868.1 50954580 2940180 complement(878637..879224) 1 NC_006087.1 identified by sequence similarity; PadR family transcriptional regulator 879224 2940180 Lxx08700 Leifsonia xyli subsp. xyli str. CTCB07 PadR family transcriptional regulator YP_061868.1 878637 R 281090 CDS YP_061869.1 50954581 2940507 879393..879896 1 NC_006087.1 identified by sequence similarity; hypothetical protein 879896 2940507 Lxx08690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061869.1 879393 D 281090 CDS YP_061870.1 50954582 2939811 complement(880341..880748) 1 NC_006087.1 identified by sequence similarity; globin-like protein 880748 glbO 2939811 glbO Leifsonia xyli subsp. xyli str. CTCB07 globin-like protein YP_061870.1 880341 R 281090 CDS YP_061871.1 50954583 2939126 complement(880750..881922) 1 NC_006087.1 identified by sequence similarity; small-conductance mechanosensitive channel 881922 mscS 2939126 mscS Leifsonia xyli subsp. xyli str. CTCB07 small-conductance mechanosensitive channel YP_061871.1 880750 R 281090 CDS YP_061872.1 50954584 2939991 complement(881967..882644) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 882644 chiR 2939991 chiR Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_061872.1 881967 R 281090 CDS YP_061873.1 50954585 2940609 complement(882641..883753) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 883753 chiS 2940609 chiS Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_061873.1 882641 R 281090 CDS YP_061874.1 50954586 2940429 complement(883912..884742) 1 NC_006087.1 identified by sequence similarity; ABC transporter integral membrane subunit 884742 2940429 Lxx08745 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter integral membrane subunit YP_061874.1 883912 R 281090 CDS YP_061875.1 50954587 2939649 complement(884739..885650) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 885650 spaF 2939649 spaF Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_061875.1 884739 R 281090 CDS YP_061876.1 50954588 2940416 complement(885760..888303) 1 NC_006087.1 identified by sequence similarity; aminopeptidase 888303 pepN 2940416 pepN Leifsonia xyli subsp. xyli str. CTCB07 aminopeptidase YP_061876.1 885760 R 281090 CDS YP_061877.1 50954589 2939915 888410..888898 1 NC_006087.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 888898 rpiB 2939915 rpiB Leifsonia xyli subsp. xyli str. CTCB07 ribose-5-phosphate isomerase B YP_061877.1 888410 D 281090 CDS YP_061878.1 50954590 2939709 888898..889890 1 NC_006087.1 identified by sequence similarity; DNA glycosylase 889890 2939709 Lxx08780 Leifsonia xyli subsp. xyli str. CTCB07 DNA glycosylase YP_061878.1 888898 D 281090 CDS YP_061879.1 50954591 2938655 complement(890065..890547) 1 NC_006087.1 identified by sequence similarity; starvation-induced DNA-binding protein 890547 2938655 Lxx08790 Leifsonia xyli subsp. xyli str. CTCB07 starvation-induced DNA-binding protein YP_061879.1 890065 R 281090 CDS YP_061880.1 50954592 2939910 890802..892346 1 NC_006087.1 identified by sequence similarity; proline/betaine transporter 892346 proP 2939910 proP Leifsonia xyli subsp. xyli str. CTCB07 proline/betaine transporter YP_061880.1 890802 D 281090 CDS YP_061881.1 50954593 2938656 894890..895621 1 NC_006087.1 identified by sequence similarity; phage-related integrase 895621 2938656 Lxx08820 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_061881.1 894890 D 281090 CDS YP_061882.1 50954594 2939458 895734..896048 1 NC_006087.1 identified by sequence similarity; integrase 896048 2939458 Lxx08825 Leifsonia xyli subsp. xyli str. CTCB07 integrase YP_061882.1 895734 D 281090 CDS YP_061883.1 50954595 2938666 897480..897605 1 NC_006087.1 hypothetical protein 897605 2938666 Lxx08830 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061883.1 897480 D 281090 CDS YP_061884.1 50954596 2939693 899586..900551 1 NC_006087.1 hypothetical protein 900551 2939693 Lxx08840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061884.1 899586 D 281090 CDS YP_061885.1 50954597 2939349 900553..901701 1 NC_006087.1 identified by sequence similarity; phage-related integrase 901701 2939349 Lxx08850 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_061885.1 900553 D 281090 CDS YP_061886.1 50954598 2939472 904455..905669 1 NC_006087.1 identified by sequence similarity; low-affinity phosphate transporter lipoprotein transmembrane 905669 pitA 2939472 pitA Leifsonia xyli subsp. xyli str. CTCB07 low-affinity phosphate transporter lipoprotein transmembrane YP_061886.1 904455 D 281090 CDS YP_061887.1 50954599 2940110 905666..905998 1 NC_006087.1 hypothetical protein 905998 2940110 Lxx08890 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061887.1 905666 D 281090 CDS YP_061888.1 50954600 2938380 complement(906005..907282) 1 NC_006087.1 identified by sequence similarity; xanthine/uracil permease 907282 ycdG 2938380 ycdG Leifsonia xyli subsp. xyli str. CTCB07 xanthine/uracil permease YP_061888.1 906005 R 281090 CDS YP_061889.1 50954601 2939785 907430..908848 1 NC_006087.1 identified by sequence similarity; xanthine/uracil permease 908848 2939785 Lxx08900 Leifsonia xyli subsp. xyli str. CTCB07 xanthine/uracil permease YP_061889.1 907430 D 281090 CDS YP_061890.1 50954602 2940179 908922..909605 1 NC_006087.1 identified by sequence similarity; DNA mismatch repair protein 909605 micA 2940179 micA Leifsonia xyli subsp. xyli str. CTCB07 DNA mismatch repair protein YP_061890.1 908922 D 281090 CDS YP_061891.1 50954603 2940108 909996..911420 1 NC_006087.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 911420 aspA 2940108 aspA Leifsonia xyli subsp. xyli str. CTCB07 aspartate ammonia-lyase YP_061891.1 909996 D 281090 CDS YP_061892.1 50954604 2939152 complement(911652..912527) 1 NC_006087.1 identified by sequence similarity; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 912527 2939152 Lxx08940 Leifsonia xyli subsp. xyli str. CTCB07 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_061892.1 911652 R 281090 CDS YP_061893.1 50954605 2940342 912653..914104 1 NC_006087.1 identified by sequence similarity; FAD/FMN-containing dehydrogenase 914104 2940342 Lxx08950 Leifsonia xyli subsp. xyli str. CTCB07 FAD/FMN-containing dehydrogenase YP_061893.1 912653 D 281090 CDS YP_061894.1 50954606 2940431 914277..914660 1 NC_006087.1 identified by sequence similarity; FKBP-type peptidylprolyl isomerase 914660 fkb 2940431 fkb Leifsonia xyli subsp. xyli str. CTCB07 FKBP-type peptidylprolyl isomerase YP_061894.1 914277 D 281090 CDS YP_061895.1 50954607 2938955 915251..915856 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 915856 2938955 Lxx08980 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_061895.1 915251 D 281090 CDS YP_061896.1 50954608 2939565 915994..916263 1 NC_006087.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 916263 rpsO 2939565 rpsO Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S15 YP_061896.1 915994 D 281090 CDS YP_061897.1 50954609 2939236 916338..916898 1 NC_006087.1 identified by sequence similarity; hypothetical protein 916898 2939236 Lxx09000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061897.1 916338 D 281090 CDS YP_061898.1 50954610 2939599 919180..921465 1 NC_006087.1 identified by sequence similarity; polynucleotide phosphorylase 921465 pnp 2939599 pnp Leifsonia xyli subsp. xyli str. CTCB07 polynucleotide phosphorylase YP_061898.1 919180 D 281090 CDS YP_061899.1 50954611 2938507 complement(921552..922550) 1 NC_006087.1 identified by sequence similarity; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 922550 dapD 2938507 dapD Leifsonia xyli subsp. xyli str. CTCB07 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_061899.1 921552 R 281090 CDS YP_061900.1 50954612 2938913 922568..923650 1 NC_006087.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase 923650 dapE 2938913 dapE Leifsonia xyli subsp. xyli str. CTCB07 succinyl-diaminopimelate desuccinylase YP_061900.1 922568 D 281090 CDS YP_061901.1 50954613 2940064 923703..924866 1 NC_006087.1 identified by sequence similarity; hypothetical protein 924866 2940064 Lxx09060 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061901.1 923703 D 281090 CDS YP_061902.1 50954614 2940066 924934..925107 1 NC_006087.1 identified by sequence similarity; hypothetical protein 925107 2940066 Lxx09070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061902.1 924934 D 281090 CDS YP_061903.1 50954615 2940168 complement(925295..925927) 1 NC_006087.1 identified by sequence similarity; O-methyltransferase 925927 2940168 Lxx09080 Leifsonia xyli subsp. xyli str. CTCB07 O-methyltransferase YP_061903.1 925295 R 281090 CDS YP_061904.1 50954616 2938400 926936..928231 1 NC_006087.1 hypothetical protein 928231 2938400 Lxx09100 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061904.1 926936 D 281090 CDS YP_061905.1 50954617 2939984 complement(928303..929445) 1 NC_006087.1 identified by sequence similarity; chromosome partitioning protein 929445 2939984 Lxx09110 Leifsonia xyli subsp. xyli str. CTCB07 chromosome partitioning protein YP_061905.1 928303 R 281090 CDS YP_061906.1 50954618 2938947 complement(929438..929977) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 929977 2938947 Lxx09120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061906.1 929438 R 281090 CDS YP_061907.1 50954619 2938334 complement(929964..931283) 1 NC_006087.1 identified by sequence similarity; CBS domain-containing proteins 931283 2938334 Lxx09130 Leifsonia xyli subsp. xyli str. CTCB07 CBS domain-containing proteins YP_061907.1 929964 R 281090 CDS YP_061908.1 50954620 2940375 931296..931961 1 NC_006087.1 identified by sequence similarity; hypothetical protein 931961 2940375 Lxx09140 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061908.1 931296 D 281090 CDS YP_061909.1 50954621 2940318 complement(931980..933596) 1 NC_006087.1 identified by sequence similarity; aminopeptidase 933596 pepP 2940318 pepP Leifsonia xyli subsp. xyli str. CTCB07 aminopeptidase YP_061909.1 931980 R 281090 CDS YP_061910.1 50954622 2940078 933603..934418 1 NC_006087.1 identified by sequence similarity; hypothetical protein 934418 2940078 Lxx09150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061910.1 933603 D 281090 CDS YP_061911.1 50954623 2940158 934487..935614 1 NC_006087.1 identified by sequence similarity; hypothetical protein 935614 2940158 Lxx09155 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061911.1 934487 D 281090 CDS YP_061912.1 50954624 2939727 complement(935641..937116) 1 NC_006087.1 identified by sequence similarity; ATP-dependent RNA helicase 937116 rhlE 2939727 rhlE Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent RNA helicase YP_061912.1 935641 R 281090 CDS YP_061913.1 50954625 2938271 937239..937955 1 NC_006087.1 identified by sequence similarity; hypothetical protein 937955 2938271 Lxx09190 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061913.1 937239 D 281090 CDS YP_061914.1 50954626 2938787 complement(938060..938362) 1 NC_006087.1 hypothetical protein 938362 2938787 Lxx09200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061914.1 938060 R 281090 CDS YP_061915.1 50954627 2939681 complement(938373..938603) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 938603 2939681 Lxx09210 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061915.1 938373 R 281090 CDS YP_061916.1 50954628 2940272 938696..941827 1 NC_006087.1 identified by sequence similarity; ATP-dependent DNA helicase 941827 2940272 Lxx09220 Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent DNA helicase YP_061916.1 938696 D 281090 CDS YP_061917.1 50954629 2940359 941854..945231 1 NC_006087.1 identified by sequence similarity; ATP-dependent DNA helicase 945231 2940359 Lxx09230 Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent DNA helicase YP_061917.1 941854 D 281090 CDS YP_061918.1 50954630 2939967 complement(946061..947110) 1 NC_006087.1 identified by sequence similarity; macrolide 2'-phosphotransferase 947110 mphA 2939967 mphA Leifsonia xyli subsp. xyli str. CTCB07 macrolide 2'-phosphotransferase YP_061918.1 946061 R 281090 CDS YP_061919.1 50954631 2939116 947172..948191 1 NC_006087.1 identified by sequence similarity; NADH pyrophosphatase 948191 nudC 2939116 nudC Leifsonia xyli subsp. xyli str. CTCB07 NADH pyrophosphatase YP_061919.1 947172 D 281090 CDS YP_061920.1 50954632 2939093 948188..949900 1 NC_006087.1 identified by sequence similarity; ATP-dependent DNA helicase II 949900 2939093 Lxx09260 Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent DNA helicase II YP_061920.1 948188 D 281090 CDS YP_061921.1 50954633 2940371 complement(950159..950677) 1 NC_006087.1 hypothetical protein 950677 2940371 Lxx09270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061921.1 950159 R 281090 CDS YP_061922.1 50954634 2939773 complement(950764..952107) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 952107 2939773 Lxx09280 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061922.1 950764 R 281090 CDS YP_061923.1 50954635 2940440 952272..953435 1 NC_006087.1 identified by sequence similarity; secreted protein 953435 2940440 Lxx09290 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_061923.1 952272 D 281090 CDS YP_061924.1 50954636 2940396 953546..956509 1 NC_006087.1 identified by sequence similarity; hypothetical protein 956509 2940396 Lxx09300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061924.1 953546 D 281090 CDS YP_061925.1 50954637 2940208 956835..957929 1 NC_006087.1 identified by sequence similarity; hypothetical protein 957929 2940208 Lxx09320 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061925.1 956835 D 281090 CDS YP_061926.1 50954638 2940348 958934..959677 1 NC_006087.1 identified by sequence similarity; hypothetical protein 959677 2940348 Lxx09350 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061926.1 958934 D 281090 CDS YP_061927.1 50954639 2940523 959826..960218 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 960218 2940523 Lxx09360 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_061927.1 959826 D 281090 CDS YP_061928.1 50954640 2939491 961837..963048 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 963048 tnp 2939491 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_061928.1 961837 D 281090 CDS YP_061929.1 50954641 2939392 964467..964955 1 NC_006087.1 identified by sequence similarity; MarR family transcriptional regulator 964955 2939392 Lxx09410 Leifsonia xyli subsp. xyli str. CTCB07 MarR family transcriptional regulator YP_061929.1 964467 D 281090 CDS YP_061930.1 50954642 2938654 967125..967346 1 NC_006087.1 identified by sequence similarity; hypothetical protein 967346 2938654 Lxx09440 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061930.1 967125 D 281090 CDS YP_061931.1 50954643 2938533 complement(967349..967813) 1 NC_006087.1 identified by sequence similarity; MarR family transcriptional regulator 967813 2938533 Lxx09445 Leifsonia xyli subsp. xyli str. CTCB07 MarR family transcriptional regulator YP_061931.1 967349 R 281090 CDS YP_061932.1 50954644 2939886 967908..968903 1 NC_006087.1 identified by sequence similarity; hypothetical protein 968903 2939886 Lxx09450 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061932.1 967908 D 281090 CDS YP_061933.1 50954645 2938911 970254..970532 1 NC_006087.1 hypothetical protein 970532 2938911 Lxx09460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061933.1 970254 D 281090 CDS YP_061934.1 50954646 2939138 971729..973009 1 NC_006087.1 identified by sequence similarity; cysteine desulfurase 973009 csd 2939138 csd Leifsonia xyli subsp. xyli str. CTCB07 cysteine desulfurase YP_061934.1 971729 D 281090 CDS YP_061935.1 50954647 2940151 973006..973446 1 NC_006087.1 identified by sequence similarity; NifU-like protein 973446 nifU 2940151 nifU Leifsonia xyli subsp. xyli str. CTCB07 NifU-like protein YP_061935.1 973006 D 281090 CDS YP_061936.1 50954648 2939738 976139..977854 1 NC_006087.1 identified by sequence similarity; ABC-type glycine betaine transport, permease 977854 opuAB 2939738 opuAB Leifsonia xyli subsp. xyli str. CTCB07 ABC-type glycine betaine transport, permease YP_061936.1 976139 D 281090 CDS YP_061937.1 50954649 2938817 complement(978027..979427) 1 NC_006087.1 identified by sequence similarity; DNA photolyase 979427 phrB 2938817 phrB Leifsonia xyli subsp. xyli str. CTCB07 DNA photolyase YP_061937.1 978027 R 281090 CDS YP_061938.1 50954650 2938427 980849..981457 1 NC_006087.1 identified by sequence similarity; hypothetical protein 981457 2938427 Lxx09580 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061938.1 980849 D 281090 CDS YP_061939.1 50954651 2939983 983053..984318 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 984318 2939983 Lxx09600 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_061939.1 983053 D 281090 CDS YP_061940.1 50954652 2938390 984350..984961 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 984961 2938390 Lxx09610 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_061940.1 984350 D 281090 CDS YP_061941.1 50954653 2939656 985045..986211 1 NC_006087.1 identified by sequence similarity; hypothetical protein 986211 2939656 Lxx09620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061941.1 985045 D 281090 CDS YP_061942.1 50954654 2939688 986504..987553 1 NC_006087.1 identified by sequence similarity; membrane protein, tellurium resistance 987553 2939688 Lxx09630 Leifsonia xyli subsp. xyli str. CTCB07 membrane protein, tellurium resistance YP_061942.1 986504 D 281090 CDS YP_061943.1 50954655 2939615 988485..989945 1 NC_006087.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 989945 leuC 2939615 leuC Leifsonia xyli subsp. xyli str. CTCB07 isopropylmalate isomerase large subunit YP_061943.1 988485 D 281090 CDS YP_061944.1 50954656 2940185 989945..990544 1 NC_006087.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 990544 leuD 2940185 leuD Leifsonia xyli subsp. xyli str. CTCB07 isopropylmalate isomerase small subunit YP_061944.1 989945 D 281090 CDS YP_061945.1 50954657 2940343 990541..991911 1 NC_006087.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 991911 murA 2940343 murA Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_061945.1 990541 D 281090 CDS YP_061946.1 50954658 2939580 991931..992695 1 NC_006087.1 identified by sequence similarity; 1-acylglycerol-3-phosphate O-acyltransferase 992695 plsC 2939580 plsC Leifsonia xyli subsp. xyli str. CTCB07 1-acylglycerol-3-phosphate O-acyltransferase YP_061946.1 991931 D 281090 CDS YP_061947.1 50954659 2939234 992736..993845 1 NC_006087.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 993845 gpsA 2939234 gpsA Leifsonia xyli subsp. xyli str. CTCB07 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_061947.1 992736 D 281090 CDS YP_061948.1 50954660 2939415 993940..994833 1 NC_006087.1 identified by sequence similarity; D-alanine:D-alanine ligase 994833 ddlA 2939415 ddlA Leifsonia xyli subsp. xyli str. CTCB07 D-alanine:D-alanine ligase YP_061948.1 993940 D 281090 CDS YP_061949.1 50954661 2940327 complement(994844..995344) 1 NC_006087.1 identified by sequence similarity; secreted protein 995344 2940327 Lxx09730 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_061949.1 994844 R 281090 CDS YP_061950.1 50954662 2938424 995370..996365 1 NC_006087.1 identified by sequence similarity; thiamine-monophosphate kinase 996365 thiL 2938424 thiL Leifsonia xyli subsp. xyli str. CTCB07 thiamine-monophosphate kinase YP_061950.1 995370 D 281090 CDS YP_061951.1 50954663 2939098 complement(996379..996951) 1 NC_006087.1 identified by sequence similarity; DNA methyltransferase 996951 2939098 Lxx09740 Leifsonia xyli subsp. xyli str. CTCB07 DNA methyltransferase YP_061951.1 996379 R 281090 CDS YP_061952.1 50954664 2938580 997029..999248 1 NC_006087.1 identified by sequence similarity; ATP-dependent DNA helicase RecG 999248 recG 2938580 recG Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent DNA helicase RecG YP_061952.1 997029 D 281090 CDS YP_061953.1 50954665 2940190 999335..999814 1 NC_006087.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 999814 coaD 2940190 coaD Leifsonia xyli subsp. xyli str. CTCB07 phosphopantetheine adenylyltransferase YP_061953.1 999335 D 281090 CDS YP_061954.1 50954666 2938308 1000020..1000604 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1000604 2938308 Lxx09770 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061954.1 1000020 D 281090 CDS YP_061955.1 50954667 2938442 1000607..1000810 1 NC_006087.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1000810 rpmF 2938442 rpmF Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L32 YP_061955.1 1000607 D 281090 CDS YP_061956.1 50954668 2938919 1000822..1001535 1 NC_006087.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1001535 rnc 2938919 rnc Leifsonia xyli subsp. xyli str. CTCB07 ribonuclease III YP_061956.1 1000822 D 281090 CDS YP_061957.1 50954669 2939806 1001513..1002406 1 NC_006087.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1002406 mutM 2939806 mutM Leifsonia xyli subsp. xyli str. CTCB07 formamidopyrimidine-DNA glycosylase YP_061957.1 1001513 D 281090 CDS YP_061958.1 50954670 2939391 1003098..1003409 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1003409 2939391 Lxx09812 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061958.1 1003098 D 281090 CDS YP_061959.1 50954671 2940545 complement(1004979..1006598) 1 NC_006087.1 identified by sequence similarity; ubiquinol-cytochrome C reductase cytochrome B subunit 1006598 qcrB 2940545 qcrB Leifsonia xyli subsp. xyli str. CTCB07 ubiquinol-cytochrome C reductase cytochrome B subunit YP_061959.1 1004979 R 281090 CDS YP_061960.1 50954672 2938572 complement(1006595..1007608) 1 NC_006087.1 identified by sequence similarity; Rieske iron-sulfur component of ubiQ-cytB reductase 1007608 qcrA 2938572 qcrA Leifsonia xyli subsp. xyli str. CTCB07 Rieske iron-sulfur component of ubiQ-cytB reductase YP_061960.1 1006595 R 281090 CDS YP_061961.1 50954673 2939990 complement(1007717..1008559) 1 NC_006087.1 identified by sequence similarity; ubiquinol-cytochrome C reductase cytochrome C subunit 1008559 qcrC 2939990 qcrC Leifsonia xyli subsp. xyli str. CTCB07 ubiquinol-cytochrome C reductase cytochrome C subunit YP_061961.1 1007717 R 281090 CDS YP_061962.1 50954674 2939710 complement(1008583..1009218) 1 NC_006087.1 identified by sequence similarity; cytochrome C oxidase subunit III 1009218 ctaE 2939710 ctaE Leifsonia xyli subsp. xyli str. CTCB07 cytochrome C oxidase subunit III YP_061962.1 1008583 R 281090 CDS YP_061963.1 50954675 2939928 1009360..1010409 1 NC_006087.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1010409 trpD 2939928 trpD Leifsonia xyli subsp. xyli str. CTCB07 anthranilate phosphoribosyltransferase YP_061963.1 1009360 D 281090 CDS YP_061964.1 50954676 2939402 1010451..1011440 1 NC_006087.1 identified by sequence similarity; dihydroxyacetone kinase 1011440 dak1 2939402 dak1 Leifsonia xyli subsp. xyli str. CTCB07 dihydroxyacetone kinase YP_061964.1 1010451 D 281090 CDS YP_061965.1 50954677 2939625 1011471..1012103 1 NC_006087.1 identified by sequence similarity; dihydroxyacetone kinase 1012103 dak2 2939625 dak2 Leifsonia xyli subsp. xyli str. CTCB07 dihydroxyacetone kinase YP_061965.1 1011471 D 281090 CDS YP_061966.1 50954678 2939647 1012100..1012810 1 NC_006087.1 identified by sequence similarity; PTS system enzyme I 1012810 hpr 2939647 hpr Leifsonia xyli subsp. xyli str. CTCB07 PTS system enzyme I YP_061966.1 1012100 D 281090 CDS YP_061967.1 50954679 2938946 complement(1012977..1014266) 1 NC_006087.1 identified by sequence similarity; aspartate transaminase 1014266 aspC 2938946 aspC Leifsonia xyli subsp. xyli str. CTCB07 aspartate transaminase YP_061967.1 1012977 R 281090 CDS YP_061968.1 50954680 2940013 1014328..1014972 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1014972 2940013 Lxx09900 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061968.1 1014328 D 281090 CDS YP_061969.1 50954681 2939078 complement(1014965..1015444) 1 NC_006087.1 identified by sequence similarity; dihydrofolate reductase 1015444 folA 2939078 folA Leifsonia xyli subsp. xyli str. CTCB07 dihydrofolate reductase YP_061969.1 1014965 R 281090 CDS YP_061970.1 50954682 2939820 complement(1015441..1016250) 1 NC_006087.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1016250 thyA 2939820 thyA Leifsonia xyli subsp. xyli str. CTCB07 thymidylate synthase YP_061970.1 1015441 R 281090 CDS YP_061971.1 50954683 2938653 1016376..1017203 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1017203 2938653 Lxx09940 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061971.1 1016376 D 281090 CDS YP_061972.1 50954684 2938729 1017232..1017966 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1017966 2938729 Lxx09950 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061972.1 1017232 D 281090 CDS YP_061973.1 50954685 2939088 complement(1018467..1019219) 1 NC_006087.1 identified by sequence similarity; glucokinase 1019219 glk 2939088 glk Leifsonia xyli subsp. xyli str. CTCB07 glucokinase YP_061973.1 1018467 R 281090 CDS YP_061974.1 50954686 2939411 complement(1019313..1020179) 1 NC_006087.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1020179 ampM 2939411 ampM Leifsonia xyli subsp. xyli str. CTCB07 methionine aminopeptidase YP_061974.1 1019313 R 281090 CDS YP_061975.1 50954687 2938302 complement(1020514..1020777) 1 NC_006087.1 hypothetical protein 1020777 2938302 Lxx09990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061975.1 1020514 R 281090 CDS YP_061976.1 50954688 2938797 complement(1021131..1021964) 1 NC_006087.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1021964 panB 2938797 panB Leifsonia xyli subsp. xyli str. CTCB07 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_061976.1 1021131 R 281090 CDS YP_061977.1 50954689 2940225 1022030..1023367 1 NC_006087.1 identified by sequence similarity; glutamine synthetase 1023367 glnA 2940225 glnA Leifsonia xyli subsp. xyli str. CTCB07 glutamine synthetase YP_061977.1 1022030 D 281090 CDS YP_061978.1 50954690 2938393 1023407..1026430 1 NC_006087.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 1026430 glnE 2938393 glnE Leifsonia xyli subsp. xyli str. CTCB07 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_061978.1 1023407 D 281090 CDS YP_061979.1 50954691 2940551 1028337..1029548 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 1029548 tnp 2940551 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_061979.1 1028337 D 281090 CDS YP_061980.1 50954692 2939637 complement(1029620..1031044) 1 NC_006087.1 identified by sequence similarity; glutamine synthetase 1031044 glnA 2939637 glnA Leifsonia xyli subsp. xyli str. CTCB07 glutamine synthetase YP_061980.1 1029620 R 281090 CDS YP_061981.1 50954693 2939719 1031993..1032418 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1032418 2939719 Lxx10090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061981.1 1031993 D 281090 CDS YP_061982.1 50954694 2939545 complement(1032533..1033231) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1033231 2939545 Lxx10100 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061982.1 1032533 R 281090 CDS YP_061983.1 50954695 2939446 complement(1033319..1034308) 1 NC_006087.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1034308 lipA 2939446 lipA Leifsonia xyli subsp. xyli str. CTCB07 lipoyl synthase YP_061983.1 1033319 R 281090 CDS YP_061984.1 50954696 2938822 complement(1034305..1034979) 1 NC_006087.1 lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 1034979 lipB 2938822 lipB Leifsonia xyli subsp. xyli str. CTCB07 lipoyltransferase YP_061984.1 1034305 R 281090 CDS YP_061985.1 50954697 2939520 1034991..1036472 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1036472 2939520 Lxx10120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061985.1 1034991 D 281090 CDS YP_061986.1 50954698 2938747 complement(1036520..1037932) 1 NC_006087.1 identified by sequence similarity; dihydrolipoamide acetyltransferase 1037932 pdhB 2938747 pdhB Leifsonia xyli subsp. xyli str. CTCB07 dihydrolipoamide acetyltransferase YP_061986.1 1036520 R 281090 CDS YP_061987.1 50954699 2940595 complement(1038019..1039392) 1 NC_006087.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1039392 2940595 Lxx10150 Leifsonia xyli subsp. xyli str. CTCB07 dihydrolipoamide dehydrogenase YP_061987.1 1038019 R 281090 CDS YP_061988.1 50954700 2938372 complement(1039497..1040987) 1 NC_006087.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1040987 pep 2938372 pep Leifsonia xyli subsp. xyli str. CTCB07 leucyl aminopeptidase YP_061988.1 1039497 R 281090 CDS YP_061989.1 50954701 2939740 1041091..1042020 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1042020 2939740 Lxx10170 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061989.1 1041091 D 281090 CDS YP_061990.1 50954702 2940071 1042057..1043307 1 NC_006087.1 identified by sequence similarity; major facilitator superfamily permease 1043307 2940071 Lxx10180 Leifsonia xyli subsp. xyli str. CTCB07 major facilitator superfamily permease YP_061990.1 1042057 D 281090 CDS YP_061991.1 50954703 2938978 1043578..1044900 1 NC_006087.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 1044900 hrdB 2938978 hrdB Leifsonia xyli subsp. xyli str. CTCB07 RNA polymerase sigma factor YP_061991.1 1043578 D 281090 CDS YP_061992.1 50954704 2939457 1044905..1046179 1 NC_006087.1 identified by sequence similarity; UDP-N-acetylmuramyl tripeptide synthetase 1046179 murC 2939457 murC Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylmuramyl tripeptide synthetase YP_061992.1 1044905 D 281090 CDS YP_061993.1 50954705 2938252 1046176..1046892 1 NC_006087.1 identified by sequence similarity; cobyric acid synthase 1046892 cobQ 2938252 cobQ Leifsonia xyli subsp. xyli str. CTCB07 cobyric acid synthase YP_061993.1 1046176 D 281090 CDS YP_061994.1 50954706 2939503 complement(1046916..1048370) 1 NC_006087.1 identified by sequence similarity; opine oxidase subunit A 1048370 2939503 Lxx10220 Leifsonia xyli subsp. xyli str. CTCB07 opine oxidase subunit A YP_061994.1 1046916 R 281090 CDS YP_061995.1 50954707 2939917 complement(1048372..1048698) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1048698 2939917 Lxx10230 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061995.1 1048372 R 281090 CDS YP_061996.1 50954708 2940583 complement(1049885..1050817) 1 NC_006087.1 identified by sequence similarity; dihydrodipicolinate synthase 1050817 dapA 2940583 dapA Leifsonia xyli subsp. xyli str. CTCB07 dihydrodipicolinate synthase YP_061996.1 1049885 R 281090 CDS YP_061997.1 50954709 2938972 complement(1050864..1052336) 1 NC_006087.1 identified by sequence similarity; Na+/H+ antiporter 1052336 nhaC 2938972 nhaC Leifsonia xyli subsp. xyli str. CTCB07 Na+/H+ antiporter YP_061997.1 1050864 R 281090 CDS YP_061998.1 50954710 2938828 1052523..1053077 1 NC_006087.1 identified by sequence similarity; transcriptional regulator 1053077 2938828 Lxx10290 Leifsonia xyli subsp. xyli str. CTCB07 transcriptional regulator YP_061998.1 1052523 D 281090 CDS YP_061999.1 50954711 2939418 1053103..1053438 1 NC_006087.1 hypothetical protein 1053438 2939418 Lxx10300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_061999.1 1053103 D 281090 CDS YP_062000.1 50954712 2939884 1053435..1053527 1 NC_006087.1 hypothetical protein 1053527 2939884 Lxx10310 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062000.1 1053435 D 281090 CDS YP_062001.1 50954713 2939106 complement(1053573..1054685) 1 NC_006087.1 identified by sequence similarity; alanine racemase 1054685 alr 2939106 alr Leifsonia xyli subsp. xyli str. CTCB07 alanine racemase YP_062001.1 1053573 R 281090 CDS YP_062002.1 50954714 2939766 complement(1054682..1055392) 1 NC_006087.1 identified by sequence similarity; alanine racemase 1055392 alr 2939766 alr Leifsonia xyli subsp. xyli str. CTCB07 alanine racemase YP_062002.1 1054682 R 281090 CDS YP_062003.1 50954715 2938949 complement(1055428..1055664) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1055664 2938949 Lxx10335 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062003.1 1055428 R 281090 CDS YP_062004.1 50954716 2938796 1055878..1057962 1 NC_006087.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1057962 gyrB 2938796 gyrB Leifsonia xyli subsp. xyli str. CTCB07 DNA topoisomerase IV subunit B YP_062004.1 1055878 D 281090 CDS YP_062005.1 50954717 2939382 complement(1058029..1060500) 1 NC_006087.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1060500 gyrA 2939382 gyrA Leifsonia xyli subsp. xyli str. CTCB07 DNA topoisomerase IV subunit A YP_062005.1 1058029 R 281090 CDS YP_062006.1 50954718 2938709 1060558..1061691 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1061691 2938709 Lxx10365 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062006.1 1060558 D 281090 CDS YP_062007.1 50954719 2939108 complement(1061705..1062802) 1 NC_006087.1 identified by sequence similarity; DNA-binding protein 1062802 2939108 Lxx10370 Leifsonia xyli subsp. xyli str. CTCB07 DNA-binding protein YP_062007.1 1061705 R 281090 CDS YP_062008.1 50954720 2938342 1063003..1063302 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1063302 2938342 Lxx10380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062008.1 1063003 D 281090 CDS YP_062009.1 50954721 2940384 complement(1063315..1063761) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1063761 2940384 Lxx10400 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062009.1 1063315 R 281090 CDS YP_062010.1 50954722 2938667 1063802..1064260 1 NC_006087.1 identified by sequence similarity; deoxyuridine 5'-triphosphate nucleotidohydrolase 1064260 dut 2938667 dut Leifsonia xyli subsp. xyli str. CTCB07 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_062010.1 1063802 D 281090 CDS YP_062011.1 50954723 2939311 1064398..1064901 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1064901 2939311 Lxx10410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062011.1 1064398 D 281090 CDS YP_062012.1 50954724 2938310 1064910..1065668 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1065668 2938310 Lxx10420 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062012.1 1064910 D 281090 CDS YP_062013.1 50954725 2938918 1065715..1068096 1 NC_006087.1 identified by sequence similarity; Mn/Cd2+-ATPase, MntA 1068096 2938918 Lxx10430 Leifsonia xyli subsp. xyli str. CTCB07 Mn/Cd2+-ATPase, MntA YP_062013.1 1065715 D 281090 CDS YP_062014.1 50954726 2939694 1068197..1071079 1 NC_006087.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1071079 2939694 Lxx10440 Leifsonia xyli subsp. xyli str. CTCB07 aconitate hydratase YP_062014.1 1068197 D 281090 CDS YP_062015.1 50954727 2939756 1071157..1073109 1 NC_006087.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1073109 dxs 2939756 dxs Leifsonia xyli subsp. xyli str. CTCB07 1-deoxy-D-xylulose-5-phosphate synthase YP_062015.1 1071157 D 281090 CDS YP_062016.1 50954728 2939315 complement(1074359..1076497) 1 NC_006087.1 identified by sequence similarity; 3-hydroxyacyl-CoA dehydrogenase 1076497 fadB 2939315 fadB Leifsonia xyli subsp. xyli str. CTCB07 3-hydroxyacyl-CoA dehydrogenase YP_062016.1 1074359 R 281090 CDS YP_062017.1 50954729 2939462 complement(1076505..1077731) 1 NC_006087.1 identified by sequence similarity; acetyl-CoA acetyltransferase 1077731 atoB 2939462 atoB Leifsonia xyli subsp. xyli str. CTCB07 acetyl-CoA acetyltransferase YP_062017.1 1076505 R 281090 CDS YP_062018.1 50954730 2939736 complement(1077802..1078998) 1 NC_006087.1 identified by sequence similarity; ribonuclease 1078998 2939736 Lxx10490 Leifsonia xyli subsp. xyli str. CTCB07 ribonuclease YP_062018.1 1077802 R 281090 CDS YP_062019.1 50954731 2939094 complement(1078991..1079587) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1079587 2939094 Lxx10500 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062019.1 1078991 R 281090 CDS YP_062020.1 50954732 2939532 complement(1080850..1081290) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1081290 2939532 Lxx10540 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062020.1 1080850 R 281090 CDS YP_062021.1 50954733 2938717 complement(1081287..1082180) 1 NC_006087.1 identified by sequence similarity; thiosulfate sulfurtransferase 1082180 sseA 2938717 sseA Leifsonia xyli subsp. xyli str. CTCB07 thiosulfate sulfurtransferase YP_062021.1 1081287 R 281090 CDS YP_062022.1 50954734 2938412 1082305..1083357 1 NC_006087.1 identified by sequence similarity; ATP/GTP-binding integral membrane protein 1083357 2938412 Lxx10560 Leifsonia xyli subsp. xyli str. CTCB07 ATP/GTP-binding integral membrane protein YP_062022.1 1082305 D 281090 CDS YP_062023.1 50954735 2939912 1083569..1084840 1 NC_006087.1 identified by sequence similarity; ammonium transporter 1084840 amt 2939912 amt Leifsonia xyli subsp. xyli str. CTCB07 ammonium transporter YP_062023.1 1083569 D 281090 CDS YP_062024.1 50954736 2939964 1085054..1086244 1 NC_006087.1 identified by sequence similarity; ammonium transporter 1086244 amt 2939964 amt Leifsonia xyli subsp. xyli str. CTCB07 ammonium transporter YP_062024.1 1085054 D 281090 CDS YP_062025.1 50954737 2939843 1088437..1088883 1 NC_006087.1 identified by sequence similarity; MutT-like domain-containing protein 1088883 2939843 Lxx10605 Leifsonia xyli subsp. xyli str. CTCB07 MutT-like domain-containing protein YP_062025.1 1088437 D 281090 CDS YP_062026.1 50954738 2939486 1090093..1090275 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1090275 2939486 Lxx10660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062026.1 1090093 D 281090 CDS YP_062027.1 50954739 2940596 1091326..1093413 1 NC_006087.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1093413 thrS 2940596 thrS Leifsonia xyli subsp. xyli str. CTCB07 threonyl-tRNA synthetase YP_062027.1 1091326 D 281090 CDS YP_062028.1 50954740 2940549 1093473..1094027 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1094027 2940549 Lxx10700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062028.1 1093473 D 281090 CDS YP_062029.1 50954741 2939540 complement(1094058..1094909) 1 NC_006087.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1094909 pdxY 2939540 pdxY Leifsonia xyli subsp. xyli str. CTCB07 pyridoxamine kinase YP_062029.1 1094058 R 281090 CDS YP_062030.1 50954742 2939934 complement(1094906..1096255) 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 1096255 2939934 Lxx10730 Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_062030.1 1094906 R 281090 CDS YP_062031.1 50954743 2940340 1096325..1097224 1 NC_006087.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 1097224 2940340 Lxx10720 Leifsonia xyli subsp. xyli str. CTCB07 pyridoxal biosynthesis lyase PdxS YP_062031.1 1096325 D 281090 CDS YP_062032.1 50954744 2938473 1097214..1097810 1 NC_006087.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 1097810 2938473 Lxx10740 Leifsonia xyli subsp. xyli str. CTCB07 glutamine amidotransferase subunit PdxT YP_062032.1 1097214 D 281090 CDS YP_062033.1 50954745 2939430 1097875..1098633 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1098633 2939430 Lxx10750 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062033.1 1097875 D 281090 CDS YP_062034.1 50954746 2938347 1098646..1099272 1 NC_006087.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1099272 ruvC 2938347 ruvC Leifsonia xyli subsp. xyli str. CTCB07 Holliday junction resolvase YP_062034.1 1098646 D 281090 CDS YP_062035.1 50954747 2939762 1099269..1099892 1 NC_006087.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1099892 ruvA 2939762 ruvA Leifsonia xyli subsp. xyli str. CTCB07 Holliday junction DNA helicase RuvA YP_062035.1 1099269 D 281090 CDS YP_062036.1 50954748 2939921 1099889..1100932 1 NC_006087.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1100932 ruvB 2939921 ruvB Leifsonia xyli subsp. xyli str. CTCB07 Holliday junction DNA helicase RuvB YP_062036.1 1099889 D 281090 CDS YP_062037.1 50954749 2939376 1101004..1101405 1 NC_006087.1 identified by sequence similarity; preprotein translocase subunit YajC 1101405 yajC 2939376 yajC Leifsonia xyli subsp. xyli str. CTCB07 preprotein translocase subunit YajC YP_062037.1 1101004 D 281090 CDS YP_062038.1 50954750 2940270 1101536..1103203 1 NC_006087.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1103203 secD 2940270 secD Leifsonia xyli subsp. xyli str. CTCB07 preprotein translocase subunit SecD YP_062038.1 1101536 D 281090 CDS YP_062039.1 50954751 2940105 1103203..1104219 1 NC_006087.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1104219 secF 2940105 secF Leifsonia xyli subsp. xyli str. CTCB07 preprotein translocase subunit SecF YP_062039.1 1103203 D 281090 CDS YP_062040.1 50954752 2938415 1104259..1104582 1 NC_006087.1 identified by sequence similarity; thiosulfate sulfurtransferase 1104582 glpE 2938415 glpE Leifsonia xyli subsp. xyli str. CTCB07 thiosulfate sulfurtransferase YP_062040.1 1104259 D 281090 CDS YP_062041.1 50954753 2938261 1104647..1106923 1 NC_006087.1 identified by sequence similarity; GTP pyrophosphokinase 1106923 relA 2938261 relA Leifsonia xyli subsp. xyli str. CTCB07 GTP pyrophosphokinase YP_062041.1 1104647 D 281090 CDS YP_062042.1 50954754 2938584 complement(1106910..1107428) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1107428 2938584 Lxx10840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062042.1 1106910 R 281090 CDS YP_062043.1 50954755 2940036 complement(1107611..1108849) 1 NC_006087.1 identified by sequence similarity; DNA repair ATPase 1108849 2940036 Lxx10850 Leifsonia xyli subsp. xyli str. CTCB07 DNA repair ATPase YP_062043.1 1107611 R 281090 CDS YP_062044.1 50954756 2939808 complement(1108898..1109536) 1 NC_006087.1 identified by sequence similarity; peptidyl-prolyl cis-trans isomerase B 1109536 ppiB 2939808 ppiB Leifsonia xyli subsp. xyli str. CTCB07 peptidyl-prolyl cis-trans isomerase B YP_062044.1 1108898 R 281090 CDS YP_062045.1 50954757 2940432 1109786..1111126 1 NC_006087.1 identified by sequence similarity; recombination factor protein RarA 1111126 2940432 Lxx10870 Leifsonia xyli subsp. xyli str. CTCB07 recombination factor protein RarA YP_062045.1 1109786 D 281090 CDS YP_062046.1 50954758 2938540 1111310..1111933 1 NC_006087.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1111933 rpsD 2938540 rpsD Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S4 YP_062046.1 1111310 D 281090 CDS YP_062047.1 50954759 2940115 1112042..1112419 1 NC_006087.1 identified by sequence similarity; secreted protein 1112419 2940115 Lxx10890 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_062047.1 1112042 D 281090 CDS YP_062048.1 50954760 2939707 1112481..1112672 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1112672 2939707 Lxx10900 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062048.1 1112481 D 281090 CDS YP_062049.1 50954761 2938703 1112717..1115374 1 NC_006087.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1115374 alaS 2938703 alaS Leifsonia xyli subsp. xyli str. CTCB07 alanyl-tRNA synthetase YP_062049.1 1112717 D 281090 CDS YP_062050.1 50954762 2939701 1115378..1115845 1 NC_006087.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1115845 2939701 Lxx10920 Leifsonia xyli subsp. xyli str. CTCB07 Holliday junction resolvase-like protein YP_062050.1 1115378 D 281090 CDS YP_062051.1 50954763 2939768 1116633..1117376 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1117376 2939768 Lxx10930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062051.1 1116633 D 281090 CDS YP_062052.1 50954764 2939287 1117834..1118919 1 NC_006087.1 identified by sequence similarity; shikimate 5-dehydrogenase 1118919 aroE 2939287 aroE Leifsonia xyli subsp. xyli str. CTCB07 shikimate 5-dehydrogenase YP_062052.1 1117834 D 281090 CDS YP_062053.1 50954765 2939348 1118961..1120169 1 NC_006087.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1120169 aroC 2939348 aroC Leifsonia xyli subsp. xyli str. CTCB07 chorismate synthase YP_062053.1 1118961 D 281090 CDS YP_062054.1 50954766 2938277 1120210..1120710 1 NC_006087.1 identified by sequence similarity; shikimate kinase I 1120710 aroK 2938277 aroK Leifsonia xyli subsp. xyli str. CTCB07 shikimate kinase I YP_062054.1 1120210 D 281090 CDS YP_062055.1 50954767 2939951 1120707..1121786 1 NC_006087.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1121786 aroB 2939951 aroB Leifsonia xyli subsp. xyli str. CTCB07 3-dehydroquinate synthase YP_062055.1 1120707 D 281090 CDS YP_062056.1 50954768 2940614 1121897..1122124 1 NC_006087.1 hypothetical protein 1122124 2940614 Lxx10980 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062056.1 1121897 D 281090 CDS YP_062057.1 50954769 2940253 1122121..1122567 1 NC_006087.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1122567 aroD 2940253 aroD Leifsonia xyli subsp. xyli str. CTCB07 3-dehydroquinate dehydratase YP_062057.1 1122121 D 281090 CDS YP_062058.1 50954770 2940532 1122670..1123233 1 NC_006087.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1123233 efp 2940532 efp Leifsonia xyli subsp. xyli str. CTCB07 elongation factor P YP_062058.1 1122670 D 281090 CDS YP_062059.1 50954771 2940494 1123233..1123667 1 NC_006087.1 identified by sequence similarity; transcription termination factor 1123667 nusB 2940494 nusB Leifsonia xyli subsp. xyli str. CTCB07 transcription termination factor YP_062059.1 1123233 D 281090 CDS YP_062060.1 50954772 2939572 1123664..1124371 1 NC_006087.1 shows similarity to disulfide isomerases; hypothetical protein 1124371 2939572 Lxx11020 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062060.1 1123664 D 281090 CDS YP_062061.1 50954773 2938301 1130858..1131409 1 NC_006087.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1131409 2938301 Lxx11050 Leifsonia xyli subsp. xyli str. CTCB07 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase YP_062061.1 1130858 D 281090 CDS YP_062062.1 50954774 2938251 1131406..1132353 1 NC_006087.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 1132353 pyrB 2938251 pyrB Leifsonia xyli subsp. xyli str. CTCB07 aspartate carbamoyltransferase YP_062062.1 1131406 D 281090 CDS YP_062063.1 50954775 2940482 1132371..1133687 1 NC_006087.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1133687 pyrC 2940482 pyrC Leifsonia xyli subsp. xyli str. CTCB07 dihydroorotase YP_062063.1 1132371 D 281090 CDS YP_062064.1 50954776 2940426 1133774..1134205 1 NC_006087.1 hypothetical protein 1134205 2940426 Lxx11080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062064.1 1133774 D 281090 CDS YP_062065.1 50954777 2939218 1134195..1135358 1 NC_006087.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1135358 carA 2939218 carA Leifsonia xyli subsp. xyli str. CTCB07 carbamoyl phosphate synthase small subunit YP_062065.1 1134195 D 281090 CDS YP_062066.1 50954778 2938244 1135358..1138639 1 NC_006087.1 identified by sequence similarity; carbamoylphosphate synthase, large chain 1138639 carB 2938244 carB Leifsonia xyli subsp. xyli str. CTCB07 carbamoylphosphate synthase, large chain YP_062066.1 1135358 D 281090 CDS YP_062067.1 50954779 2940329 1138636..1139514 1 NC_006087.1 identified by sequence similarity; orotidine 5'-phosphate decarboxylase 1139514 pyrF 2940329 pyrF Leifsonia xyli subsp. xyli str. CTCB07 orotidine 5'-phosphate decarboxylase YP_062067.1 1138636 D 281090 CDS YP_062068.1 50954780 2939739 1139705..1140469 1 NC_006087.1 identified by sequence similarity; guanylate kinase 1140469 gmk 2939739 gmk Leifsonia xyli subsp. xyli str. CTCB07 guanylate kinase YP_062068.1 1139705 D 281090 CDS YP_062069.1 50954781 2939919 1140558..1140821 1 NC_006087.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1140821 rpoZ 2939919 rpoZ Leifsonia xyli subsp. xyli str. CTCB07 DNA-directed RNA polymerase subunit omega YP_062069.1 1140558 D 281090 CDS YP_062070.1 50954782 2938675 1140908..1142203 1 NC_006087.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1142203 dfp 2938675 dfp Leifsonia xyli subsp. xyli str. CTCB07 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_062070.1 1140908 D 281090 CDS YP_062071.1 50954783 2939319 1142245..1143438 1 NC_006087.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1143438 metK 2939319 metK Leifsonia xyli subsp. xyli str. CTCB07 S-adenosylmethionine synthetase YP_062071.1 1142245 D 281090 CDS YP_062072.1 50954784 2938933 1143441..1145414 1 NC_006087.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1145414 priA 2938933 priA Leifsonia xyli subsp. xyli str. CTCB07 primosome assembly protein PriA YP_062072.1 1143441 D 281090 CDS YP_062073.1 50954785 2939085 1145464..1146372 1 NC_006087.1 identified by sequence similarity; methionyl-tRNA formyltransferase 1146372 fmt 2939085 fmt Leifsonia xyli subsp. xyli str. CTCB07 methionyl-tRNA formyltransferase YP_062073.1 1145464 D 281090 CDS YP_062074.1 50954786 2939413 1147897..1148559 1 NC_006087.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1148559 2939413 Lxx11200 Leifsonia xyli subsp. xyli str. CTCB07 ribulose-phosphate 3-epimerase YP_062074.1 1147897 D 281090 CDS YP_062075.1 50954787 2939136 1148562..1148825 1 NC_006087.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 1148825 hisE 2939136 hisE Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosyl-ATP pyrophosphatase YP_062075.1 1148562 D 281090 CDS YP_062076.1 50954788 2940476 1148874..1149713 1 NC_006087.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1149713 hisG 2940476 hisG Leifsonia xyli subsp. xyli str. CTCB07 ATP phosphoribosyltransferase YP_062076.1 1148874 D 281090 CDS YP_062077.1 50954789 2938800 1149713..1150477 1 NC_006087.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1150477 hisF 2938800 hisF Leifsonia xyli subsp. xyli str. CTCB07 imidazole glycerol phosphate synthase subunit HisF YP_062077.1 1149713 D 281090 CDS YP_062078.1 50954790 2940438 1150474..1150851 1 NC_006087.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 1150851 hisI 2940438 hisI Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosyl-AMP cyclohydrolase YP_062078.1 1150474 D 281090 CDS YP_062079.1 50954791 2938930 1150899..1152458 1 NC_006087.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1152458 trpE 2938930 trpE Leifsonia xyli subsp. xyli str. CTCB07 anthranilate synthase component I YP_062079.1 1150899 D 281090 CDS YP_062080.1 50954792 2940408 1152448..1153146 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1153146 2940408 Lxx11260 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062080.1 1152448 D 281090 CDS YP_062081.1 50954793 2939242 1153240..1153476 1 NC_006087.1 identified by sequence similarity; mambrane protein 1153476 2939242 Lxx11270 Leifsonia xyli subsp. xyli str. CTCB07 mambrane protein YP_062081.1 1153240 D 281090 CDS YP_062082.1 50954794 2938292 1153481..1154263 1 NC_006087.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 1154263 trpC 2938292 trpC Leifsonia xyli subsp. xyli str. CTCB07 indole-3-glycerol phosphate synthase YP_062082.1 1153481 D 281090 CDS YP_062083.1 50954795 2940182 1154263..1155474 1 NC_006087.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1155474 trpB 2940182 trpB Leifsonia xyli subsp. xyli str. CTCB07 tryptophan synthase subunit beta YP_062083.1 1154263 D 281090 CDS YP_062084.1 50954796 2939640 1155471..1156256 1 NC_006087.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1156256 trpA 2939640 trpA Leifsonia xyli subsp. xyli str. CTCB07 tryptophan synthase subunit alpha YP_062084.1 1155471 D 281090 CDS YP_062085.1 50954797 2938579 1156338..1157342 1 NC_006087.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1157342 lgt 2938579 lgt Leifsonia xyli subsp. xyli str. CTCB07 prolipoprotein diacylglyceryl transferase YP_062085.1 1156338 D 281090 CDS YP_062086.1 50954798 2939904 1157498..1162075 1 NC_006087.1 identified by sequence similarity; glutamate synthase subunit alpha 1162075 gltB 2939904 gltB Leifsonia xyli subsp. xyli str. CTCB07 glutamate synthase subunit alpha YP_062086.1 1157498 D 281090 CDS YP_062087.1 50954799 2939505 1162118..1163575 1 NC_006087.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1163575 gltD 2939505 gltD Leifsonia xyli subsp. xyli str. CTCB07 glutamate synthase subunit beta YP_062087.1 1162118 D 281090 CDS YP_062088.1 50954800 2939927 1163640..1165106 1 NC_006087.1 identified by sequence similarity; pyruvate kinase II 1165106 pyk 2939927 pyk Leifsonia xyli subsp. xyli str. CTCB07 pyruvate kinase II YP_062088.1 1163640 D 281090 CDS YP_062089.1 50954801 2940351 complement(1165157..1165918) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1165918 2940351 Lxx11350 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062089.1 1165157 R 281090 CDS YP_062090.1 50954802 2940598 complement(1166169..1166963) 1 NC_006087.1 hypothetical protein 1166963 2940598 Lxx11360 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062090.1 1166169 R 281090 CDS YP_062091.1 50954803 2939869 1167328..1167462 1 NC_006087.1 hypothetical protein 1167462 2939869 Lxx11370 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062091.1 1167328 D 281090 CDS YP_062092.1 50954804 2940207 1168594..1169199 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 1169199 2940207 Lxx11390 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062092.1 1168594 D 281090 CDS YP_062093.1 50954805 2940280 complement(1169269..1169673) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1169673 2940280 Lxx11400 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062093.1 1169269 R 281090 CDS YP_062094.1 50954806 2938262 1169741..1172428 1 NC_006087.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1172428 polA 2938262 polA Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase I YP_062094.1 1169741 D 281090 CDS YP_062095.1 50954807 2939675 1172459..1174132 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1174132 2939675 Lxx11420 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062095.1 1172459 D 281090 CDS YP_062096.1 50954808 2938355 1174526..1175968 1 NC_006087.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1175968 rpsA 2938355 rpsA Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S1 YP_062096.1 1174526 D 281090 CDS YP_062097.1 50954809 2939570 1176081..1176677 1 NC_006087.1 identified by sequence similarity; dephospho-CoA kinase 1176677 2939570 Lxx11440 Leifsonia xyli subsp. xyli str. CTCB07 dephospho-CoA kinase YP_062097.1 1176081 D 281090 CDS YP_062098.1 50954810 2940504 1176755..1178821 1 NC_006087.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1178821 uvrB 2940504 uvrB Leifsonia xyli subsp. xyli str. CTCB07 excinuclease ABC subunit B YP_062098.1 1176755 D 281090 CDS YP_062099.1 50954811 2938959 complement(1179350..1179538) 1 NC_006087.1 hypothetical protein 1179538 2938959 Lxx11460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062099.1 1179350 R 281090 CDS YP_062100.1 50954812 2940607 1180186..1183176 1 NC_006087.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1183176 uvrA 2940607 uvrA Leifsonia xyli subsp. xyli str. CTCB07 excinuclease ABC subunit A YP_062100.1 1180186 D 281090 CDS YP_062101.1 50954813 2940529 1183187..1185157 1 NC_006087.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1185157 uvrC 2940529 uvrC Leifsonia xyli subsp. xyli str. CTCB07 excinuclease ABC subunit C YP_062101.1 1183187 D 281090 CDS YP_062102.1 50954814 2938387 1185245..1186132 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1186132 2938387 Lxx11490 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062102.1 1185245 D 281090 CDS YP_062103.1 50954815 2940563 1186189..1187169 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1187169 2940563 Lxx11500 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062103.1 1186189 D 281090 CDS YP_062104.1 50954816 2939695 1187250..1187876 1 NC_006087.1 identified by sequence similarity; superoxide dismutase 1187876 sodA 2939695 sodA Leifsonia xyli subsp. xyli str. CTCB07 superoxide dismutase YP_062104.1 1187250 D 281090 CDS YP_062105.1 50954817 2938790 1187979..1188989 1 NC_006087.1 identified by sequence similarity; glyceraldehyde 3-phosphate dehydrogenase 1188989 gap 2938790 gap Leifsonia xyli subsp. xyli str. CTCB07 glyceraldehyde 3-phosphate dehydrogenase YP_062105.1 1187979 D 281090 CDS YP_062106.1 50954818 2940304 1189005..1190216 1 NC_006087.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1190216 pgk 2940304 pgk Leifsonia xyli subsp. xyli str. CTCB07 phosphoglycerate kinase YP_062106.1 1189005 D 281090 CDS YP_062107.1 50954819 2938967 1190219..1191022 1 NC_006087.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1191022 tpiA 2938967 tpiA Leifsonia xyli subsp. xyli str. CTCB07 triosephosphate isomerase YP_062107.1 1190219 D 281090 CDS YP_062108.1 50954820 2938485 1191090..1191335 1 NC_006087.1 identified by sequence similarity; preprotein translocase subunit SecG 1191335 secG 2938485 secG Leifsonia xyli subsp. xyli str. CTCB07 preprotein translocase subunit SecG YP_062108.1 1191090 D 281090 CDS YP_062109.1 50954821 2940606 1191366..1191731 1 NC_006087.1 identified by sequence similarity; electron transport protein 1191731 2940606 Lxx11560 Leifsonia xyli subsp. xyli str. CTCB07 electron transport protein YP_062109.1 1191366 D 281090 CDS YP_062110.1 50954822 2938359 complement(1191811..1192443) 1 NC_006087.1 identified by sequence similarity; 6-phosphogluconolactonase 1192443 pgl 2938359 pgl Leifsonia xyli subsp. xyli str. CTCB07 6-phosphogluconolactonase YP_062110.1 1191811 R 281090 CDS YP_062111.1 50954823 2939972 complement(1192578..1193540) 1 NC_006087.1 identified by sequence similarity; oxppcycle protein 1193540 opcA 2939972 opcA Leifsonia xyli subsp. xyli str. CTCB07 oxppcycle protein YP_062111.1 1192578 R 281090 CDS YP_062112.1 50954824 2940081 complement(1193537..1195078) 1 NC_006087.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1195078 zwf 2940081 zwf Leifsonia xyli subsp. xyli str. CTCB07 glucose-6-phosphate 1-dehydrogenase YP_062112.1 1193537 R 281090 CDS YP_062113.1 50954825 2939454 complement(1195105..1196715) 1 NC_006087.1 identified by sequence similarity; glucose-6-phosphate isomerase 1196715 pgiA 2939454 pgiA Leifsonia xyli subsp. xyli str. CTCB07 glucose-6-phosphate isomerase YP_062113.1 1195105 R 281090 CDS YP_062114.1 50954826 2940374 complement(1196712..1197857) 1 NC_006087.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 1197857 tal2 2940374 tal2 Leifsonia xyli subsp. xyli str. CTCB07 transaldolase YP_062114.1 1196712 R 281090 CDS YP_062115.1 50954827 2939993 complement(1197889..1200069) 1 NC_006087.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1200069 tktA1 2939993 tktA1 Leifsonia xyli subsp. xyli str. CTCB07 transketolase YP_062115.1 1197889 R 281090 CDS YP_062116.1 50954828 2939697 1200279..1201202 1 NC_006087.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1201202 ctaB 2939697 ctaB Leifsonia xyli subsp. xyli str. CTCB07 protoheme IX farnesyltransferase YP_062116.1 1200279 D 281090 CDS YP_062117.1 50954829 2940362 complement(1201645..1202571) 1 NC_006087.1 identified by sequence similarity; cytochrome oxidase assembly protein 1202571 ctaA 2940362 ctaA Leifsonia xyli subsp. xyli str. CTCB07 cytochrome oxidase assembly protein YP_062117.1 1201645 R 281090 CDS YP_062118.1 50954830 2940043 1202869..1204287 1 NC_006087.1 identified by sequence similarity; iron-regulated ABC-type transporter 1204287 sufB 2940043 sufB Leifsonia xyli subsp. xyli str. CTCB07 iron-regulated ABC-type transporter YP_062118.1 1202869 D 281090 CDS YP_062119.1 50954831 2940008 1204331..1205515 1 NC_006087.1 identified by sequence similarity; ABC transporter membrane component 1205515 sufD 2940008 sufD Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter membrane component YP_062119.1 1204331 D 281090 CDS YP_062120.1 50954832 2940234 1205515..1205844 1 NC_006087.1 identified by sequence similarity; benzene 1,2-dioxygenase, ferredoxin protein 1205844 2940234 Lxx11670 Leifsonia xyli subsp. xyli str. CTCB07 benzene 1,2-dioxygenase, ferredoxin protein YP_062120.1 1205515 D 281090 CDS YP_062121.1 50954833 2939429 1205847..1206641 1 NC_006087.1 identified by sequence similarity; multidrug resistance exporter 1206641 sufC 2939429 sufC Leifsonia xyli subsp. xyli str. CTCB07 multidrug resistance exporter YP_062121.1 1205847 D 281090 CDS YP_062122.1 50954834 2938637 1206651..1206980 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1206980 2938637 Lxx11690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062122.1 1206651 D 281090 CDS YP_062123.1 50954835 2938679 1207087..1208685 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1208685 ybiT 2938679 ybiT Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062123.1 1207087 D 281090 CDS YP_062124.1 50954836 2939464 complement(1208700..1209569) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1209569 2939464 Lxx11710 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062124.1 1208700 R 281090 CDS YP_062125.1 50954837 2939215 complement(1209566..1209799) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1209799 2939215 Lxx11715 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062125.1 1209566 R 281090 CDS YP_062126.1 50954838 2938784 complement(1209799..1210104) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1210104 2938784 Lxx11730 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062126.1 1209799 R 281090 CDS YP_062127.1 50954839 2938527 1210183..1210893 1 NC_006087.1 identified by sequence similarity; 3-oxoacyl-ACP reductase 1210893 fabG 2938527 fabG Leifsonia xyli subsp. xyli str. CTCB07 3-oxoacyl-ACP reductase YP_062127.1 1210183 D 281090 CDS YP_062128.1 50954840 2939438 complement(1211006..1211704) 1 NC_006087.1 identified by sequence similarity; phosphoserine phosphatase 1211704 serB 2939438 serB Leifsonia xyli subsp. xyli str. CTCB07 phosphoserine phosphatase YP_062128.1 1211006 R 281090 CDS YP_062129.1 50954841 2939494 complement(1211691..1212935) 1 NC_006087.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1212935 glgC 2939494 glgC Leifsonia xyli subsp. xyli str. CTCB07 glucose-1-phosphate adenylyltransferase YP_062129.1 1211691 R 281090 CDS YP_062130.1 50954842 2938639 1214203..1215003 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1215003 2938639 Lxx11780 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062130.1 1214203 D 281090 CDS YP_062131.1 50954843 2939939 1215123..1215374 1 NC_006087.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1215374 rpmE2 2939939 rpmE2 Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L31 YP_062131.1 1215123 D 281090 CDS YP_062132.1 50954844 2939467 complement(1215606..1215902) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1215902 2939467 Lxx11810 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062132.1 1215606 R 281090 CDS YP_062133.1 50954845 2939657 complement(1216073..1216756) 1 NC_006087.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1216756 2939657 Lxx11820 Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase III subunit epsilon YP_062133.1 1216073 R 281090 CDS YP_062134.1 50954846 2940399 complement(1216818..1218527) 1 NC_006087.1 identified by sequence similarity; trehalose synthase 1218527 palI 2940399 palI Leifsonia xyli subsp. xyli str. CTCB07 trehalose synthase YP_062134.1 1216818 R 281090 CDS YP_062135.1 50954847 2940312 1218685..1219572 1 NC_006087.1 identified by sequence similarity; hydrolase 1219572 2940312 Lxx11840 Leifsonia xyli subsp. xyli str. CTCB07 hydrolase YP_062135.1 1218685 D 281090 CDS YP_062136.1 50954848 2940421 1219569..1220651 1 NC_006087.1 identified by sequence similarity; mannosyltransferase 1220651 mtfB 2940421 mtfB Leifsonia xyli subsp. xyli str. CTCB07 mannosyltransferase YP_062136.1 1219569 D 281090 CDS YP_062137.1 50954849 2938759 complement(1222075..1222476) 1 NC_006087.1 identified by sequence similarity; phosphoglycerate mutase 1222476 gpm 2938759 gpm Leifsonia xyli subsp. xyli str. CTCB07 phosphoglycerate mutase YP_062137.1 1222075 R 281090 CDS YP_062138.1 50954850 2939883 complement(1222524..1223375) 1 NC_006087.1 identified by sequence similarity; Sir2 family regulatory protein 1223375 2939883 Lxx11890 Leifsonia xyli subsp. xyli str. CTCB07 Sir2 family regulatory protein YP_062138.1 1222524 R 281090 CDS YP_062139.1 50954851 2938753 1223453..1224286 1 NC_006087.1 identified by sequence similarity; rRNA methyltransferase 1224286 spoU 2938753 spoU Leifsonia xyli subsp. xyli str. CTCB07 rRNA methyltransferase YP_062139.1 1223453 D 281090 CDS YP_062140.1 50954852 2939417 1224372..1225556 1 NC_006087.1 identified by sequence similarity; D-alanyl-D-alanine endopeptidase 1225556 pbpA 2939417 pbpA Leifsonia xyli subsp. xyli str. CTCB07 D-alanyl-D-alanine endopeptidase YP_062140.1 1224372 D 281090 CDS YP_062141.1 50954853 2940502 1225553..1227943 1 NC_006087.1 identified by sequence similarity; UvrA-like protein 1227943 2940502 Lxx11910 Leifsonia xyli subsp. xyli str. CTCB07 UvrA-like protein YP_062141.1 1225553 D 281090 CDS YP_062142.1 50954854 2939433 1228990..1229067 1 NC_006087.1 hypothetical protein 1229067 2939433 Lxx11920 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062142.1 1228990 D 281090 CDS YP_062143.1 50954855 2938945 complement(1230536..1231321) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1231321 2938945 Lxx11940 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062143.1 1230536 R 281090 CDS YP_062144.1 50954856 2938510 1231426..1233213 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1233213 2938510 Lxx11930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062144.1 1231426 D 281090 CDS YP_062145.1 50954857 2940568 complement(1233261..1234613) 1 NC_006087.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1234613 gdhA 2940568 gdhA Leifsonia xyli subsp. xyli str. CTCB07 glutamate dehydrogenase YP_062145.1 1233261 R 281090 CDS YP_062146.1 50954858 2940443 1234993..1235772 1 NC_006087.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1235772 amn 2940443 amn Leifsonia xyli subsp. xyli str. CTCB07 AMP nucleosidase YP_062146.1 1234993 D 281090 CDS YP_062147.1 50954859 2940594 1235959..1237893 1 NC_006087.1 identified by sequence similarity; hemagglutinin/hemolysin-like protein 1237893 2940594 Lxx11970 Leifsonia xyli subsp. xyli str. CTCB07 hemagglutinin/hemolysin-like protein YP_062147.1 1235959 D 281090 CDS YP_062148.1 50954860 2940021 complement(1237995..1239407) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1239407 bioA 2940021 bioA Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062148.1 1237995 R 281090 CDS YP_062149.1 50954861 2938368 complement(1239410..1239892) 1 NC_006087.1 identified by sequence similarity; AsnC family transcriptional regulator 1239892 asnC 2938368 asnC Leifsonia xyli subsp. xyli str. CTCB07 AsnC family transcriptional regulator YP_062149.1 1239410 R 281090 CDS YP_062150.1 50954862 2940516 1240220..1241356 1 NC_006087.1 identified by sequence similarity; aldehyde dehydrogenase 1241356 2940516 Lxx12000 Leifsonia xyli subsp. xyli str. CTCB07 aldehyde dehydrogenase YP_062150.1 1240220 D 281090 CDS YP_062151.1 50954863 2938243 1241434..1242870 1 NC_006087.1 identified by sequence similarity; aldehyde dehydrogenase 1242870 2938243 Lxx12010 Leifsonia xyli subsp. xyli str. CTCB07 aldehyde dehydrogenase YP_062151.1 1241434 D 281090 CDS YP_062152.1 50954864 2940582 complement(1242848..1243576) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1243576 2940582 Lxx12013 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062152.1 1242848 R 281090 CDS YP_062153.1 50954865 2938966 1243685..1244077 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1244077 2938966 Lxx12015 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062153.1 1243685 D 281090 CDS YP_062154.1 50954866 2938944 1244110..1244892 1 NC_006087.1 identified by sequence similarity; protein phosphatase 1244892 2938944 Lxx12030 Leifsonia xyli subsp. xyli str. CTCB07 protein phosphatase YP_062154.1 1244110 D 281090 CDS YP_062155.1 50954867 2938687 1245154..1246569 1 NC_006087.1 identified by sequence similarity; serine/threonine kinase 1246569 2938687 Lxx12040 Leifsonia xyli subsp. xyli str. CTCB07 serine/threonine kinase YP_062155.1 1245154 D 281090 CDS YP_062156.1 50954868 2938794 1246542..1252484 1 NC_006087.1 identified by sequence similarity; fibronectin-like protein 1252484 2938794 Lxx12050 Leifsonia xyli subsp. xyli str. CTCB07 fibronectin-like protein YP_062156.1 1246542 D 281090 CDS YP_062157.1 50954869 2939222 1252579..1253550 1 NC_006087.1 identified by sequence similarity; methanol dehydrogenase regulatory protein 1253550 2939222 Lxx12060 Leifsonia xyli subsp. xyli str. CTCB07 methanol dehydrogenase regulatory protein YP_062157.1 1252579 D 281090 CDS YP_062158.1 50954870 2939374 1253622..1254890 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1254890 2939374 Lxx12070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062158.1 1253622 D 281090 CDS YP_062159.1 50954871 2939757 1254887..1257199 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1257199 2939757 Lxx12080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062159.1 1254887 D 281090 CDS YP_062160.1 50954872 2940188 1257196..1257777 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1257777 2940188 Lxx12090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062160.1 1257196 D 281090 CDS YP_062161.1 50954873 2939434 complement(1257829..1258944) 1 NC_006087.1 identified by sequence similarity; alanine dehydrogenase 1258944 ald 2939434 ald Leifsonia xyli subsp. xyli str. CTCB07 alanine dehydrogenase YP_062161.1 1257829 R 281090 CDS YP_062162.1 50954874 2939691 complement(1259209..1260261) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1260261 2939691 Lxx12110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062162.1 1259209 R 281090 CDS YP_062163.1 50954875 2940018 complement(1260258..1261580) 1 NC_006087.1 identified by sequence similarity; 4-aminobutyrate aminotransferase 1261580 goaG 2940018 goaG Leifsonia xyli subsp. xyli str. CTCB07 4-aminobutyrate aminotransferase YP_062163.1 1260258 R 281090 CDS YP_062164.1 50954876 2940513 1261653..1262126 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1262126 2940513 Lxx12120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062164.1 1261653 D 281090 CDS YP_062165.1 50954877 2940581 complement(1262134..1262871) 1 NC_006087.1 identified by sequence similarity; 1-acylglycerol-3-phosphate O-acyltransferase 1262871 plsC 2940581 plsC Leifsonia xyli subsp. xyli str. CTCB07 1-acylglycerol-3-phosphate O-acyltransferase YP_062165.1 1262134 R 281090 CDS YP_062166.1 50954878 2940262 complement(1262918..1263784) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1263784 2940262 Lxx12150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062166.1 1262918 R 281090 CDS YP_062167.1 50954879 2939784 complement(1263794..1265131) 1 NC_006087.1 identified by sequence similarity; 4-aminobutyrate aminotransferase 1265131 gabT 2939784 gabT Leifsonia xyli subsp. xyli str. CTCB07 4-aminobutyrate aminotransferase YP_062167.1 1263794 R 281090 CDS YP_062168.1 50954880 2939932 1265147..1266163 1 NC_006087.1 identified by sequence similarity; peptidylprolyl isomerase 1266163 fkpA 2939932 fkpA Leifsonia xyli subsp. xyli str. CTCB07 peptidylprolyl isomerase YP_062168.1 1265147 D 281090 CDS YP_062169.1 50954881 2940397 1266163..1267248 1 NC_006087.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1267248 dxr 2940397 dxr Leifsonia xyli subsp. xyli str. CTCB07 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_062169.1 1266163 D 281090 CDS YP_062170.1 50954882 2938956 1267322..1268653 1 NC_006087.1 identified by sequence similarity; zinc metalloprotease 1268653 2938956 Lxx12190 Leifsonia xyli subsp. xyli str. CTCB07 zinc metalloprotease YP_062170.1 1267322 D 281090 CDS YP_062171.1 50954883 2940560 1268704..1269867 1 NC_006087.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1269867 ispG 2940560 ispG Leifsonia xyli subsp. xyli str. CTCB07 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_062171.1 1268704 D 281090 CDS YP_062172.1 50954884 2939517 1269974..1271746 1 NC_006087.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1271746 proS 2939517 proS Leifsonia xyli subsp. xyli str. CTCB07 prolyl-tRNA synthetase YP_062172.1 1269974 D 281090 CDS YP_062173.1 50954885 2939554 complement(1271768..1272814) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1272814 2939554 Lxx12220 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062173.1 1271768 R 281090 CDS YP_062174.1 50954886 2939923 complement(1273049..1274071) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1274071 2939923 Lxx12230 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062174.1 1273049 R 281090 CDS YP_062175.1 50954887 2939895 1274339..1274995 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 1274995 2939895 Lxx12240 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_062175.1 1274339 D 281090 CDS YP_062176.1 50954888 2940214 1275185..1276078 1 NC_006087.1 identified by sequence similarity; ABC-type glycine betaine transport, ATP-binding protein 1276078 proV 2940214 proV Leifsonia xyli subsp. xyli str. CTCB07 ABC-type glycine betaine transport, ATP-binding protein YP_062176.1 1275185 D 281090 CDS YP_062177.1 50954889 2938674 1276075..1276764 1 NC_006087.1 identified by sequence similarity; ABC-type glycine betaine transport, permease 1276764 proW 2938674 proW Leifsonia xyli subsp. xyli str. CTCB07 ABC-type glycine betaine transport, permease YP_062177.1 1276075 D 281090 CDS YP_062178.1 50954890 2939591 1276761..1277504 1 NC_006087.1 identified by sequence similarity; ABC-type glycine betaine transport, permease 1277504 proZ 2939591 proZ Leifsonia xyli subsp. xyli str. CTCB07 ABC-type glycine betaine transport, permease YP_062178.1 1276761 D 281090 CDS YP_062179.1 50954891 2939621 1277510..1278463 1 NC_006087.1 identified by sequence similarity; ABC-type glycine betaine transport, substrate-binding protein 1278463 proX 2939621 proX Leifsonia xyli subsp. xyli str. CTCB07 ABC-type glycine betaine transport, substrate-binding protein YP_062179.1 1277510 D 281090 CDS YP_062180.1 50954892 2939389 complement(1278628..1279569) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1279569 2939389 Lxx12290 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062180.1 1278628 R 281090 CDS YP_062181.1 50954893 2940138 complement(1279574..1279939) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1279939 2940138 Lxx12310 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062181.1 1279574 R 281090 CDS YP_062182.1 50954894 2940506 1280034..1281446 1 NC_006087.1 identified by sequence similarity; cytochrome D ubiquinol oxidase subunit I 1281446 cydA 2940506 cydA Leifsonia xyli subsp. xyli str. CTCB07 cytochrome D ubiquinol oxidase subunit I YP_062182.1 1280034 D 281090 CDS YP_062183.1 50954895 2940097 1281460..1282479 1 NC_006087.1 identified by sequence similarity; cytochrome D ubiquinol oxidase subunit II 1282479 cydB 2940097 cydB Leifsonia xyli subsp. xyli str. CTCB07 cytochrome D ubiquinol oxidase subunit II YP_062183.1 1281460 D 281090 CDS YP_062184.1 50954896 2940178 1282481..1284106 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1284106 cydD 2940178 cydD Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062184.1 1282481 D 281090 CDS YP_062185.1 50954897 2940172 1284093..1285820 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1285820 cydC 2940172 cydC Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062185.1 1284093 D 281090 CDS YP_062186.1 50954898 2940026 complement(1285824..1286600) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1286600 2940026 Lxx12350 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062186.1 1285824 R 281090 CDS YP_062187.1 50954899 2938692 1286636..1288093 1 NC_006087.1 identified by sequence similarity; anthranilate synthase component I 1288093 trpE 2938692 trpE Leifsonia xyli subsp. xyli str. CTCB07 anthranilate synthase component I YP_062187.1 1286636 D 281090 CDS YP_062188.1 50954900 2939631 1288182..1290782 1 NC_006087.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1290782 leuS 2939631 leuS Leifsonia xyli subsp. xyli str. CTCB07 leucyl-tRNA synthetase YP_062188.1 1288182 D 281090 CDS YP_062189.1 50954901 2940099 1291172..1291603 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1291603 2940099 Lxx12380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062189.1 1291172 D 281090 CDS YP_062190.1 50954902 2940006 1291633..1292910 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1292910 2940006 Lxx12390 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062190.1 1291633 D 281090 CDS YP_062191.1 50954903 2938384 1294018..1294179 1 NC_006087.1 hypothetical protein 1294179 2938384 Lxx12420 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062191.1 1294018 D 281090 CDS YP_062192.1 50954904 2940492 1294633..1294998 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx4 1294998 tnp 2940492 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx4 YP_062192.1 1294633 D 281090 CDS YP_062193.1 50954905 2940271 1295749..1296645 1 NC_006087.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1296645 rpsB 2940271 rpsB Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S2 YP_062193.1 1295749 D 281090 CDS YP_062194.1 50954906 2939342 1296688..1297518 1 NC_006087.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1297518 tsf 2939342 tsf Leifsonia xyli subsp. xyli str. CTCB07 elongation factor Ts YP_062194.1 1296688 D 281090 CDS YP_062195.1 50954907 2938492 1297632..1298345 1 NC_006087.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1298345 pyrH 2938492 pyrH Leifsonia xyli subsp. xyli str. CTCB07 uridylate kinase YP_062195.1 1297632 D 281090 CDS YP_062196.1 50954908 2938408 1298390..1298950 1 NC_006087.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1298950 frr 2938408 frr Leifsonia xyli subsp. xyli str. CTCB07 ribosome recycling factor YP_062196.1 1298390 D 281090 CDS YP_062197.1 50954909 2940612 1299032..1299940 1 NC_006087.1 identified by sequence similarity; phosphatidate cytidylyltransferase 1299940 cdsA 2940612 cdsA Leifsonia xyli subsp. xyli str. CTCB07 phosphatidate cytidylyltransferase YP_062197.1 1299032 D 281090 CDS YP_062198.1 50954910 2939941 1299953..1300489 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1300489 2939941 Lxx12490 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062198.1 1299953 D 281090 CDS YP_062199.1 50954911 2940591 1300561..1301274 1 NC_006087.1 identified by sequence similarity; secreted protein 1301274 2940591 Lxx12500 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_062199.1 1300561 D 281090 CDS YP_062200.1 50954912 2938404 1301293..1301592 1 NC_006087.1 identified by sequence similarity; ATP/GTP-binding protein 1301592 2938404 Lxx12510 Leifsonia xyli subsp. xyli str. CTCB07 ATP/GTP-binding protein YP_062200.1 1301293 D 281090 CDS YP_062201.1 50954913 2938980 1301608..1302339 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1302339 2938980 Lxx12520 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062201.1 1301608 D 281090 CDS YP_062202.1 50954914 2938954 complement(1302350..1303180) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1303180 2938954 Lxx12530 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062202.1 1302350 R 281090 CDS YP_062203.1 50954915 2940249 complement(1303409..1305718) 1 NC_006087.1 identified by sequence similarity; large Ala/Glu-rich protein 1305718 2940249 Lxx12540 Leifsonia xyli subsp. xyli str. CTCB07 large Ala/Glu-rich protein YP_062203.1 1303409 R 281090 CDS YP_062204.1 50954916 2939217 1305841..1307748 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1307748 2939217 Lxx12550 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062204.1 1305841 D 281090 CDS YP_062205.1 50954917 2938971 1307772..1308725 1 NC_006087.1 identified by sequence similarity; thioredoxin 1308725 trxA 2938971 trxA Leifsonia xyli subsp. xyli str. CTCB07 thioredoxin YP_062205.1 1307772 D 281090 CDS YP_062206.1 50954918 2938397 complement(1308770..1310971) 1 NC_006087.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1310971 glgB 2938397 glgB Leifsonia xyli subsp. xyli str. CTCB07 glycogen branching protein YP_062206.1 1308770 R 281090 CDS YP_062207.1 50954919 2938766 complement(1310968..1313028) 1 NC_006087.1 identified by sequence similarity; alpha-amylase 1313028 2938766 Lxx12580 Leifsonia xyli subsp. xyli str. CTCB07 alpha-amylase YP_062207.1 1310968 R 281090 CDS YP_062208.1 50954920 2938558 complement(1315071..1315526) 1 NC_006087.1 hypothetical protein 1315526 2938558 Lxx12610 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062208.1 1315071 R 281090 CDS YP_062209.1 50954921 2939758 1316051..1316290 1 NC_006087.1 hypothetical protein 1316290 2939758 Lxx12620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062209.1 1316051 D 281090 CDS YP_062210.1 50954922 2938783 1316304..1316762 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1316762 2938783 Lxx12630 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062210.1 1316304 D 281090 CDS YP_062211.1 50954923 2939353 1316878..1317222 1 NC_006087.1 hypothetical protein 1317222 2939353 Lxx12640 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062211.1 1316878 D 281090 CDS YP_062212.1 50954924 2938309 1318053..1319150 1 NC_006087.1 hypothetical protein 1319150 2938309 Lxx12650 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062212.1 1318053 D 281090 CDS YP_062213.1 50954925 2940298 complement(1320141..1320443) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1320443 2940298 Lxx12670 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062213.1 1320141 R 281090 CDS YP_062214.1 50954926 2939720 complement(1320805..1321278) 1 NC_006087.1 identified by sequence similarity; AhpC/TSA family protein 1321278 2939720 Lxx12690 Leifsonia xyli subsp. xyli str. CTCB07 AhpC/TSA family protein YP_062214.1 1320805 R 281090 CDS YP_062215.1 50954927 2938684 1321491..1324217 1 NC_006087.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1324217 aceE 2938684 aceE Leifsonia xyli subsp. xyli str. CTCB07 pyruvate dehydrogenase subunit E1 YP_062215.1 1321491 D 281090 CDS YP_062216.1 50954928 2938921 1324228..1325436 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1325436 2938921 Lxx12710 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062216.1 1324228 D 281090 CDS YP_062217.1 50954929 2938733 1325522..1326442 1 NC_006087.1 identified by sequence similarity; ACP S-malonyltransferase 1326442 fabD 2938733 fabD Leifsonia xyli subsp. xyli str. CTCB07 ACP S-malonyltransferase YP_062217.1 1325522 D 281090 CDS YP_062218.1 50954930 2938658 1326454..1327464 1 NC_006087.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1327464 fabH 2938658 fabH Leifsonia xyli subsp. xyli str. CTCB07 3-oxoacyl-ACP synthase YP_062218.1 1326454 D 281090 CDS YP_062219.1 50954931 2940297 1327507..1327758 1 NC_006087.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1327758 acpP 2940297 acpP Leifsonia xyli subsp. xyli str. CTCB07 acyl carrier protein YP_062219.1 1327507 D 281090 CDS YP_062220.1 50954932 2940251 1327840..1329102 1 NC_006087.1 identified by sequence similarity; 3-oxoacyl-ACP synthase 1329102 fabF 2940251 fabF Leifsonia xyli subsp. xyli str. CTCB07 3-oxoacyl-ACP synthase YP_062220.1 1327840 D 281090 CDS YP_062221.1 50954933 2939243 complement(1329349..1329927) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1329927 2939243 Lxx12770 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062221.1 1329349 R 281090 CDS YP_062222.1 50954934 2939639 1330081..1330950 1 NC_006087.1 identified by sequence similarity; acyl-CoA thioesterase 1330950 tesB 2939639 tesB Leifsonia xyli subsp. xyli str. CTCB07 acyl-CoA thioesterase YP_062222.1 1330081 D 281090 CDS YP_062223.1 50954935 2939585 1331711..1332220 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1332220 2939585 Lxx12780 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062223.1 1331711 D 281090 CDS YP_062224.1 50954936 2939638 complement(1332243..1332362) 1 NC_006087.1 hypothetical protein 1332362 2939638 Lxx12790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062224.1 1332243 R 281090 CDS YP_062225.1 50954937 2939412 complement(1332585..1332728) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1332728 2939412 Lxx12800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062225.1 1332585 R 281090 CDS YP_062226.1 50954938 2940121 complement(1332739..1334400) 1 NC_006087.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 1334400 2940121 Lxx12810 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062226.1 1332739 R 281090 CDS YP_062227.1 50954939 2938792 complement(1334551..1335051) 1 NC_006087.1 hypothetical protein 1335051 2938792 Lxx12820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062227.1 1334551 R 281090 CDS YP_062228.1 50954940 2939840 complement(1335053..1335493) 1 NC_006087.1 identified by sequence similarity; single-strand DNA-binding protein 1335493 2939840 Lxx12825 Leifsonia xyli subsp. xyli str. CTCB07 single-strand DNA-binding protein YP_062228.1 1335053 R 281090 CDS YP_062229.1 50954941 2939292 complement(1336008..1336649) 1 NC_006087.1 identified by sequence similarity; glycosyltransferase 1336649 2939292 Lxx12840 Leifsonia xyli subsp. xyli str. CTCB07 glycosyltransferase YP_062229.1 1336008 R 281090 CDS YP_062230.1 50954942 2938469 1336832..1337497 1 NC_006087.1 hypothetical protein 1337497 2938469 Lxx12850 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062230.1 1336832 D 281090 CDS YP_062231.1 50954943 2938706 complement(1337518..1338357) 1 NC_006087.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1338357 nadE 2938706 nadE Leifsonia xyli subsp. xyli str. CTCB07 NAD synthetase YP_062231.1 1337518 R 281090 CDS YP_062232.1 50954944 2940222 complement(1338395..1339249) 1 NC_006087.1 identified by sequence similarity; LysR family transcriptional regulator 1339249 2940222 Lxx12870 Leifsonia xyli subsp. xyli str. CTCB07 LysR family transcriptional regulator YP_062232.1 1338395 R 281090 CDS YP_062233.1 50954945 2939556 1339381..1340727 1 NC_006087.1 identified by sequence similarity; integral membrane efflux protein 1340727 pimH 2939556 pimH Leifsonia xyli subsp. xyli str. CTCB07 integral membrane efflux protein YP_062233.1 1339381 D 281090 CDS YP_062234.1 50954946 2938638 1341013..1341681 1 NC_006087.1 hypothetical protein 1341681 2938638 Lxx12890 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062234.1 1341013 D 281090 CDS YP_062235.1 50954947 2940339 complement(1343133..1343681) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1343681 2940339 Lxx12895 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062235.1 1343133 R 281090 CDS YP_062236.1 50954948 2940118 1344472..1345038 1 NC_006087.1 hypothetical protein 1345038 2940118 Lxx12905 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062236.1 1344472 D 281090 CDS YP_062237.1 50954949 2940338 1346526..1347155 1 NC_006087.1 hypothetical protein 1347155 2940338 Lxx12930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062237.1 1346526 D 281090 CDS YP_062238.1 50954950 2940386 1348574..1349992 1 NC_006087.1 hypothetical protein 1349992 2940386 Lxx12950 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062238.1 1348574 D 281090 CDS YP_062239.1 50954951 2939906 1350386..1351030 1 NC_006087.1 identified by sequence similarity; transposase 1351030 2939906 Lxx12955 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_062239.1 1350386 D 281090 CDS YP_062240.1 50954952 2939911 1352017..1353126 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx2 1353126 tpase 2939911 tpase Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx2 YP_062240.1 1352017 D 281090 CDS YP_062241.1 50954953 2939502 1353209..1353445 1 NC_006087.1 identified by sequence similarity; transposase-truncated 1353445 2939502 Lxx12980 Leifsonia xyli subsp. xyli str. CTCB07 transposase-truncated YP_062241.1 1353209 D 281090 CDS YP_062242.1 50954954 2939956 1354040..1354501 1 NC_006087.1 hypothetical protein 1354501 2939956 Lxx12990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062242.1 1354040 D 281090 CDS YP_062243.1 50954955 2940268 1354498..1355637 1 NC_006087.1 identified by sequence similarity; secreted protein 1355637 2940268 Lxx13000 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_062243.1 1354498 D 281090 CDS YP_062244.1 50954956 2939969 complement(1355652..1356206) 1 NC_006087.1 identified by sequence similarity; phosphoglycolate phosphatase 1356206 cbbZ 2939969 cbbZ Leifsonia xyli subsp. xyli str. CTCB07 phosphoglycolate phosphatase YP_062244.1 1355652 R 281090 CDS YP_062245.1 50954957 2938484 1356488..1356661 1 NC_006087.1 identified by sequence similarity; transposase 1356661 2938484 Lxx13020 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_062245.1 1356488 D 281090 CDS YP_062246.1 50954958 2940219 1356788..1357603 1 NC_006087.1 identified by sequence similarity; IS1245 transposase 1357603 tnp 2940219 tnp Leifsonia xyli subsp. xyli str. CTCB07 IS1245 transposase YP_062246.1 1356788 D 281090 CDS YP_062247.1 50954959 2939685 complement(1358120..1359328) 1 NC_006087.1 identified by sequence similarity; phage-related integrase 1359328 2939685 Lxx13040 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_062247.1 1358120 R 281090 CDS YP_062248.1 50954960 2940508 complement(1359321..1359521) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1359521 2940508 Lxx13050 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062248.1 1359321 R 281090 CDS YP_062249.1 50954961 2939882 complement(1359871..1360812) 1 NC_006087.1 identified by sequence similarity; pyridine nucleotide-disulfide oxidoreductase 1360812 2939882 Lxx13070 Leifsonia xyli subsp. xyli str. CTCB07 pyridine nucleotide-disulfide oxidoreductase YP_062249.1 1359871 R 281090 CDS YP_062250.1 50954962 2938719 complement(1360817..1362292) 1 NC_006087.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1362292 gltX 2938719 gltX Leifsonia xyli subsp. xyli str. CTCB07 glutamyl-tRNA synthetase YP_062250.1 1360817 R 281090 CDS YP_062251.1 50954963 2940361 complement(1362360..1363145) 1 NC_006087.1 identified by sequence similarity; 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase 1363145 2940361 Lxx13090 Leifsonia xyli subsp. xyli str. CTCB07 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase YP_062251.1 1362360 R 281090 CDS YP_062252.1 50954964 2939388 complement(1363142..1363369) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1363369 2939388 Lxx13100 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062252.1 1363142 R 281090 CDS YP_062253.1 50954965 2938379 complement(1363545..1364024) 1 NC_006087.1 identified by sequence similarity; oxidoreductase 1364024 2938379 Lxx13110 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_062253.1 1363545 R 281090 CDS YP_062254.1 50954966 2940072 complement(1364222..1365355) 1 NC_006087.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1365355 ilvE 2940072 ilvE Leifsonia xyli subsp. xyli str. CTCB07 branched-chain amino acid aminotransferase YP_062254.1 1364222 R 281090 CDS YP_062255.1 50954967 2939672 complement(1365378..1366451) 1 NC_006087.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1366451 leuB 2939672 leuB Leifsonia xyli subsp. xyli str. CTCB07 3-isopropylmalate dehydrogenase YP_062255.1 1365378 R 281090 CDS YP_062256.1 50954968 2940274 complement(1366824..1368416) 1 NC_006087.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1368416 serA 2940274 serA Leifsonia xyli subsp. xyli str. CTCB07 D-3-phosphoglycerate dehydrogenase YP_062256.1 1366824 R 281090 CDS YP_062257.1 50954969 2940311 complement(1368528..1368725) 1 NC_006087.1 hypothetical protein 1368725 2940311 Lxx13150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062257.1 1368528 R 281090 CDS YP_062258.1 50954970 2938648 complement(1368802..1369047) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1369047 2938648 Lxx13160 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062258.1 1368802 R 281090 CDS YP_062259.1 50954971 2940475 complement(1369392..1370420) 1 NC_006087.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1370420 ilvC 2940475 ilvC Leifsonia xyli subsp. xyli str. CTCB07 ketol-acid reductoisomerase YP_062259.1 1369392 R 281090 CDS YP_062260.1 50954972 2939073 complement(1370484..1370993) 1 NC_006087.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1370993 ilvH 2939073 ilvH Leifsonia xyli subsp. xyli str. CTCB07 acetolactate synthase 3 regulatory subunit YP_062260.1 1370484 R 281090 CDS YP_062261.1 50954973 2939447 complement(1370997..1372817) 1 NC_006087.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 1 catalytic subunit 1372817 ilvB 2939447 ilvB Leifsonia xyli subsp. xyli str. CTCB07 acetolactate synthase 1 catalytic subunit YP_062261.1 1370997 R 281090 CDS YP_062262.1 50954974 2939936 complement(1372875..1374569) 1 NC_006087.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1374569 ilvD 2939936 ilvD Leifsonia xyli subsp. xyli str. CTCB07 dihydroxy-acid dehydratase YP_062262.1 1372875 R 281090 CDS YP_062263.1 50954975 2939592 complement(1374668..1375471) 1 NC_006087.1 identified by sequence similarity; trehalose-phosphatase protein 1375471 otsB 2939592 otsB Leifsonia xyli subsp. xyli str. CTCB07 trehalose-phosphatase protein YP_062263.1 1374668 R 281090 CDS YP_062264.1 50954976 2939888 complement(1375508..1376986) 1 NC_006087.1 identified by sequence similarity; trehalose-6-phosphate synthase 1376986 otsA 2939888 otsA Leifsonia xyli subsp. xyli str. CTCB07 trehalose-6-phosphate synthase YP_062264.1 1375508 R 281090 CDS YP_062265.1 50954977 2940101 complement(1377455..1378141) 1 NC_006087.1 identified by sequence similarity; secreted hydrolase 1378141 2940101 Lxx13240 Leifsonia xyli subsp. xyli str. CTCB07 secreted hydrolase YP_062265.1 1377455 R 281090 CDS YP_062266.1 50954978 2938289 complement(1378296..1379543) 1 NC_006087.1 identified by sequence similarity; arsenical pump membrane protein 1379543 arsB 2938289 arsB Leifsonia xyli subsp. xyli str. CTCB07 arsenical pump membrane protein YP_062266.1 1378296 R 281090 CDS YP_062267.1 50954979 2939288 1379834..1380271 1 NC_006087.1 hypothetical protein 1380271 2939288 Lxx13270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062267.1 1379834 D 281090 CDS YP_062268.1 50954980 2940230 1381715..1383490 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1383490 2940230 Lxx13300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062268.1 1381715 D 281090 CDS YP_062269.1 50954981 2939929 1383490..1383783 1 NC_006087.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1383783 clpS 2939929 clpS Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent Clp protease adaptor protein ClpS YP_062269.1 1383490 D 281090 CDS YP_062270.1 50954982 2940141 1383780..1384283 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1384283 2940141 Lxx13320 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062270.1 1383780 D 281090 CDS YP_062271.1 50954983 2938567 complement(1385130..1386383) 1 NC_006087.1 identified by sequence similarity; ROK family transcriptional regulator 1386383 scG 2938567 scG Leifsonia xyli subsp. xyli str. CTCB07 ROK family transcriptional regulator YP_062271.1 1385130 R 281090 CDS YP_062272.1 50954984 2938287 1388617..1388928 1 NC_006087.1 hypothetical protein 1388928 2938287 Lxx13360 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062272.1 1388617 D 281090 CDS YP_062273.1 50954985 2939872 complement(1389366..1389569) 1 NC_006087.1 hypothetical protein 1389569 2939872 Lxx13380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062273.1 1389366 R 281090 CDS YP_062274.1 50954986 2940378 1390284..1391063 1 NC_006087.1 identified by sequence similarity; inositol monophosphatase 1391063 2940378 Lxx13400 Leifsonia xyli subsp. xyli str. CTCB07 inositol monophosphatase YP_062274.1 1390284 D 281090 CDS YP_062275.1 50954987 2940130 complement(1391070..1391438) 1 NC_006087.1 identified by sequence similarity; ArsR family transcriptional regulator 1391438 2940130 Lxx13405 Leifsonia xyli subsp. xyli str. CTCB07 ArsR family transcriptional regulator YP_062275.1 1391070 R 281090 CDS YP_062276.1 50954988 2939875 1391531..1392466 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1392466 natA 2939875 natA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062276.1 1391531 D 281090 CDS YP_062277.1 50954989 2938973 1392468..1393709 1 NC_006087.1 identified by sequence similarity; ATP-dependent Na+ efflux pump 1393709 2938973 Lxx13420 Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent Na+ efflux pump YP_062277.1 1392468 D 281090 CDS YP_062278.1 50954990 2939764 1394359..1395381 1 NC_006087.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1395381 add 2939764 add Leifsonia xyli subsp. xyli str. CTCB07 adenosine deaminase YP_062278.1 1394359 D 281090 CDS YP_062279.1 50954991 2939907 1395457..1396902 1 NC_006087.1 identified by sequence similarity; amino acid permease 1396902 2939907 Lxx13440 Leifsonia xyli subsp. xyli str. CTCB07 amino acid permease YP_062279.1 1395457 D 281090 CDS YP_062280.1 50954992 2940321 complement(1396913..1398682) 1 NC_006087.1 identified by sequence similarity; ATP-dependent RNA helicase 1398682 deaD 2940321 deaD Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent RNA helicase YP_062280.1 1396913 R 281090 CDS YP_062281.1 50954993 2940511 1398860..1399141 1 NC_006087.1 identified by sequence similarity; transposase 1399141 2940511 Lxx13462 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_062281.1 1398860 D 281090 CDS YP_062282.1 50954994 2939909 complement(1401250..1401879) 1 NC_006087.1 hypothetical protein 1401879 2939909 Lxx13470 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062282.1 1401250 R 281090 CDS YP_062283.1 50954995 2939399 complement(1401945..1402631) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1402631 2939399 Lxx13480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062283.1 1401945 R 281090 CDS YP_062284.1 50954996 2939702 complement(1402689..1403165) 1 NC_006087.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1403165 smpB 2939702 smpB Leifsonia xyli subsp. xyli str. CTCB07 SsrA-binding protein YP_062284.1 1402689 R 281090 CDS YP_062285.1 50954997 2939300 complement(1403239..1404144) 1 NC_006087.1 identified by sequence similarity; cell division protein 1404144 ftsX 2939300 ftsX Leifsonia xyli subsp. xyli str. CTCB07 cell division protein YP_062285.1 1403239 R 281090 CDS YP_062286.1 50954998 2939475 complement(1404141..1405202) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1405202 ftsE 2939475 ftsE Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062286.1 1404141 R 281090 CDS YP_062287.1 50954999 2940445 complement(1405294..1406412) 1 NC_006087.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1406412 prfB 2940445 prfB Leifsonia xyli subsp. xyli str. CTCB07 peptide chain release factor 2 YP_062287.1 1405294 R 281090 CDS YP_062288.1 50955000 2939791 1407016..1407747 1 NC_006087.1 identified by sequence similarity; hemagglutinin/hemolysin-like protein 1407747 rsP 2939791 rsP Leifsonia xyli subsp. xyli str. CTCB07 hemagglutinin/hemolysin-like protein YP_062288.1 1407016 D 281090 CDS YP_062289.1 50955001 2939933 1407799..1408095 1 NC_006087.1 hypothetical protein 1408095 2939933 Lxx13550 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062289.1 1407799 D 281090 CDS YP_062290.1 50955002 2939314 1408544..1409164 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1409164 2939314 Lxx13560 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062290.1 1408544 D 281090 CDS YP_062291.1 50955003 2940345 complement(1409169..1409768) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1409768 2940345 Lxx13570 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062291.1 1409169 R 281090 CDS YP_062292.1 50955004 2938647 complement(1409768..1410523) 1 NC_006087.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 1410523 rph 2938647 rph Leifsonia xyli subsp. xyli str. CTCB07 ribonuclease PH YP_062292.1 1409768 R 281090 CDS YP_062293.1 50955005 2938471 complement(1410566..1411384) 1 NC_006087.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1411384 murI 2938471 murI Leifsonia xyli subsp. xyli str. CTCB07 glutamate racemase YP_062293.1 1410566 R 281090 CDS YP_062294.1 50955006 2939686 1411419..1412729 1 NC_006087.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1412729 pncB 2939686 pncB Leifsonia xyli subsp. xyli str. CTCB07 nicotinate phosphoribosyltransferase YP_062294.1 1411419 D 281090 CDS YP_062295.1 50955007 2938986 complement(1412737..1412982) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1412982 2938986 Lxx13610 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062295.1 1412737 R 281090 CDS YP_062296.1 50955008 2939104 complement(1413046..1414572) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1414572 2939104 Lxx13620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062296.1 1413046 R 281090 CDS YP_062297.1 50955009 2939479 complement(1414584..1415336) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1415336 natA 2939479 natA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062297.1 1414584 R 281090 CDS YP_062298.1 50955010 2940194 1416638..1417522 1 NC_006087.1 identified by sequence similarity; lipopolysaccharide exporter 1417522 rfbA 2940194 rfbA Leifsonia xyli subsp. xyli str. CTCB07 lipopolysaccharide exporter YP_062298.1 1416638 D 281090 CDS YP_062299.1 50955011 2939905 1417522..1418256 1 NC_006087.1 identified by sequence similarity; lipopolysaccharide exporter 1418256 2939905 Lxx13680 Leifsonia xyli subsp. xyli str. CTCB07 lipopolysaccharide exporter YP_062299.1 1417522 D 281090 CDS YP_062300.1 50955012 2939858 1418366..1418713 1 NC_006087.1 hypothetical protein 1418713 2939858 Lxx13690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062300.1 1418366 D 281090 CDS YP_062301.1 50955013 2938297 1418815..1419897 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1419897 2938297 Lxx13700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062301.1 1418815 D 281090 CDS YP_062302.1 50955014 2938438 1419936..1421585 1 NC_006087.1 identified by sequence similarity; serine protease 1421585 2938438 Lxx13710 Leifsonia xyli subsp. xyli str. CTCB07 serine protease YP_062302.1 1419936 D 281090 CDS YP_062303.1 50955015 2938823 1421699..1422751 1 NC_006087.1 identified by sequence similarity; glucosyltransferase 1422751 exoA 2938823 exoA Leifsonia xyli subsp. xyli str. CTCB07 glucosyltransferase YP_062303.1 1421699 D 281090 CDS YP_062304.1 50955016 2938539 1422754..1423572 1 NC_006087.1 identified by sequence similarity; transferase 1423572 2938539 Lxx13730 Leifsonia xyli subsp. xyli str. CTCB07 transferase YP_062304.1 1422754 D 281090 CDS YP_062305.1 50955017 2938421 1423565..1424446 1 NC_006087.1 identified by sequence similarity; glycosyltransferase 1424446 2938421 Lxx13740 Leifsonia xyli subsp. xyli str. CTCB07 glycosyltransferase YP_062305.1 1423565 D 281090 CDS YP_062306.1 50955018 2938702 complement(1425682..1426893) 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 1426893 tnp 2938702 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_062306.1 1425682 R 281090 CDS YP_062307.1 50955019 2939633 1428633..1429742 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx2 1429742 tpase 2939633 tpase Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx2 YP_062307.1 1428633 D 281090 CDS YP_062308.1 50955020 2938357 complement(1429810..1430400) 1 NC_006087.1 identified by sequence similarity; transposase, undefined 1430400 tnp 2938357 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, undefined YP_062308.1 1429810 R 281090 CDS YP_062309.1 50955021 2940324 1430601..1430738 1 NC_006087.1 hypothetical protein 1430738 2940324 Lxx13800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062309.1 1430601 D 281090 CDS YP_062310.1 50955022 2940603 1433760..1433948 1 NC_006087.1 identified by sequence similarity; transposase 1433948 2940603 Lxx13830 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_062310.1 1433760 D 281090 CDS YP_062311.1 50955023 2939871 1435523..1435714 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1435714 2939871 Lxx13840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062311.1 1435523 D 281090 CDS YP_062312.1 50955024 2939963 1436636..1437826 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1437826 2939963 Lxx13850 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062312.1 1436636 D 281090 CDS YP_062313.1 50955025 2939463 1437985..1438080 1 NC_006087.1 hypothetical protein 1438080 2939463 Lxx13860 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062313.1 1437985 D 281090 CDS YP_062314.1 50955026 2938561 1438091..1438201 1 NC_006087.1 hypothetical protein 1438201 2938561 Lxx13870 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062314.1 1438091 D 281090 CDS YP_062315.1 50955027 2939755 1438256..1439323 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx1-degenerated 1439323 tpase1 2939755 tpase1 Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx1-degenerated YP_062315.1 1438256 D 281090 CDS YP_062316.1 50955028 2938745 1439713..1440375 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx1-degenerated 1440375 tpase2 2938745 tpase2 Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx1-degenerated YP_062316.1 1439713 D 281090 CDS YP_062317.1 50955029 2939253 complement(1440446..1440862) 1 NC_006087.1 identified by sequence similarity; transposase, undefined 1440862 2939253 Lxx13910 Leifsonia xyli subsp. xyli str. CTCB07 transposase, undefined YP_062317.1 1440446 R 281090 CDS YP_062318.1 50955030 2939920 1441463..1441651 1 NC_006087.1 hypothetical protein 1441651 2939920 Lxx13920 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062318.1 1441463 D 281090 CDS YP_062319.1 50955031 2938283 1441644..1442000 1 NC_006087.1 hypothetical protein 1442000 2938283 Lxx13930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062319.1 1441644 D 281090 CDS YP_062320.1 50955032 2939102 1442416..1442958 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1442958 2939102 Lxx13940 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062320.1 1442416 D 281090 CDS YP_062321.1 50955033 2940177 1443131..1443880 1 NC_006087.1 hypothetical protein 1443880 2940177 Lxx13950 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062321.1 1443131 D 281090 CDS YP_062322.1 50955034 2939482 1446031..1446579 1 NC_006087.1 hypothetical protein 1446579 2939482 Lxx13990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062322.1 1446031 D 281090 CDS YP_062323.1 50955035 2940176 1446576..1447925 1 NC_006087.1 identified by sequence similarity; N-acetyl-glucosamine transferase 1447925 2940176 Lxx14000 Leifsonia xyli subsp. xyli str. CTCB07 N-acetyl-glucosamine transferase YP_062323.1 1446576 D 281090 CDS YP_062324.1 50955036 2938770 1448073..1449251 1 NC_006087.1 hypothetical protein 1449251 2938770 Lxx14010 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062324.1 1448073 D 281090 CDS YP_062325.1 50955037 2940503 complement(1449434..1450852) 1 NC_006087.1 identified by sequence similarity; N-acetyl-glucosamine transferase 1450852 2940503 Lxx14024 Leifsonia xyli subsp. xyli str. CTCB07 N-acetyl-glucosamine transferase YP_062325.1 1449434 R 281090 CDS YP_062326.1 50955038 2940248 complement(1451176..1452225) 1 NC_006087.1 identified by sequence similarity; UDP-N-acetylglucosamine 2-epimerase 1452225 2940248 Lxx14026 Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylglucosamine 2-epimerase YP_062326.1 1451176 R 281090 CDS YP_062327.1 50955039 2939891 1452533..1452823 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1452823 2939891 Lxx14028 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062327.1 1452533 D 281090 CDS YP_062328.1 50955040 2940326 1452930..1453436 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1453436 2940326 Lxx14030 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062328.1 1452930 D 281090 CDS YP_062329.1 50955041 2940307 1453730..1454797 1 NC_006087.1 identified by sequence similarity; iron uptake ABC transporter substrate-binding protein 1454797 yfP 2940307 yfP Leifsonia xyli subsp. xyli str. CTCB07 iron uptake ABC transporter substrate-binding protein YP_062329.1 1453730 D 281090 CDS YP_062330.1 50955042 2939590 1455889..1457556 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1457556 y4fN 2939590 y4fN Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062330.1 1455889 D 281090 CDS YP_062331.1 50955043 2940002 1457553..1458446 1 NC_006087.1 hypothetical protein 1458446 2940002 Lxx14080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062331.1 1457553 D 281090 CDS YP_062332.1 50955044 2938474 1458478..1459311 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1459311 2938474 Lxx14090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062332.1 1458478 D 281090 CDS YP_062333.1 50955045 2939868 1459308..1460312 1 NC_006087.1 identified by sequence similarity; LacI family transcription regulator 1460312 2939868 Lxx14110 Leifsonia xyli subsp. xyli str. CTCB07 LacI family transcription regulator YP_062333.1 1459308 D 281090 CDS YP_062334.1 50955046 2938296 1460420..1461286 1 NC_006087.1 hypothetical protein 1461286 2938296 Lxx14120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062334.1 1460420 D 281090 CDS YP_062335.1 50955047 2939855 1461868..1462212 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1462212 lsr2 2939855 lsr2 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062335.1 1461868 D 281090 CDS YP_062336.1 50955048 2940227 complement(1462766..1463389) 1 NC_006087.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1463389 2940227 Lxx14150 Leifsonia xyli subsp. xyli str. CTCB07 oligoribonuclease YP_062336.1 1462766 R 281090 CDS YP_062337.1 50955049 2938263 complement(1463400..1464323) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1464323 2938263 Lxx14160 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062337.1 1463400 R 281090 CDS YP_062338.1 50955050 2939689 1464332..1464631 1 NC_006087.1 identified by sequence similarity; thioredoxin 1464631 trxA 2939689 trxA Leifsonia xyli subsp. xyli str. CTCB07 thioredoxin YP_062338.1 1464332 D 281090 CDS YP_062339.1 50955051 2938738 1464784..1465776 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1465776 2938738 Lxx14180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062339.1 1464784 D 281090 CDS YP_062340.1 50955052 2939272 1465971..1466390 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1466390 2939272 Lxx14190 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062340.1 1465971 D 281090 CDS YP_062341.1 50955053 2939752 complement(1466387..1466572) 1 NC_006087.1 hypothetical protein 1466572 2939752 Lxx14200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062341.1 1466387 R 281090 CDS YP_062342.1 50955054 2940615 complement(1466653..1467276) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1467276 2940615 Lxx14210 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062342.1 1466653 R 281090 CDS YP_062343.1 50955055 2939706 complement(1467260..1468021) 1 NC_006087.1 identified by sequence similarity; ABC-type cobalt transport system 1468021 2939706 Lxx14220 Leifsonia xyli subsp. xyli str. CTCB07 ABC-type cobalt transport system YP_062343.1 1467260 R 281090 CDS YP_062344.1 50955056 2940062 complement(1468036..1469553) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1469553 2940062 Lxx14230 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062344.1 1468036 R 281090 CDS YP_062345.1 50955057 2940355 complement(1469559..1470173) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1470173 ykoE 2940355 ykoE Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062345.1 1469559 R 281090 CDS YP_062346.1 50955058 2938456 complement(1470386..1470634) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1470634 2938456 Lxx14250 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062346.1 1470386 R 281090 CDS YP_062347.1 50955059 2939309 1470785..1471702 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1471702 staP 2939309 staP Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062347.1 1470785 D 281090 CDS YP_062348.1 50955060 2938459 complement(1471740..1472984) 1 NC_006087.1 identified by sequence similarity; DNA polymerase IV 1472984 2938459 Lxx14270 Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase IV YP_062348.1 1471740 R 281090 CDS YP_062349.1 50955061 2939629 1473071..1473178 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1473178 2939629 Lxx14275 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062349.1 1473071 D 281090 CDS YP_062350.1 50955062 2939683 complement(1475472..1475726) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1475726 2939683 Lxx14310 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062350.1 1475472 R 281090 CDS YP_062351.1 50955063 2940059 complement(1475857..1476342) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1476342 2940059 Lxx14320 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062351.1 1475857 R 281090 CDS YP_062352.1 50955064 2939786 complement(1478638..1480137) 1 NC_006087.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1480137 gatB 2939786 gatB Leifsonia xyli subsp. xyli str. CTCB07 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_062352.1 1478638 R 281090 CDS YP_062353.1 50955065 2938499 complement(1480137..1481684) 1 NC_006087.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1481684 gatA 2938499 gatA Leifsonia xyli subsp. xyli str. CTCB07 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_062353.1 1480137 R 281090 CDS YP_062354.1 50955066 2939121 complement(1481702..1481998) 1 NC_006087.1 identified by sequence similarity; glutamyl-tRNA amidotransferase subunit C 1481998 gatC 2939121 gatC Leifsonia xyli subsp. xyli str. CTCB07 glutamyl-tRNA amidotransferase subunit C YP_062354.1 1481702 R 281090 CDS YP_062355.1 50955067 2939240 complement(1482251..1483606) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1483606 2939240 Lxx14370 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062355.1 1482251 R 281090 CDS YP_062356.2 161760708 2938486 complement(1483761..1486028) 1 NC_006087.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1486028 ligA 2938486 ligA Leifsonia xyli subsp. xyli str. CTCB07 NAD-dependent DNA ligase LigA YP_062356.2 1483761 R 281090 CDS YP_062357.1 50955069 2938962 complement(1486109..1487209) 1 NC_006087.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1487209 mnmA 2938962 mnmA Leifsonia xyli subsp. xyli str. CTCB07 tRNA-specific 2-thiouridylase MnmA YP_062357.1 1486109 R 281090 CDS YP_062358.1 50955070 2940467 complement(1487255..1487440) 1 NC_006087.1 hypothetical protein 1487440 2940467 Lxx14400 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062358.1 1487255 R 281090 CDS YP_062359.1 50955071 2938260 complement(1487453..1488631) 1 NC_006087.1 identified by sequence similarity; cysteine desulfurase 1488631 nifS 2938260 nifS Leifsonia xyli subsp. xyli str. CTCB07 cysteine desulfurase YP_062359.1 1487453 R 281090 CDS YP_062360.1 50955072 2939678 1488686..1489306 1 NC_006087.1 identified by sequence similarity; glycogen debranching protein 1489306 treX 2939678 treX Leifsonia xyli subsp. xyli str. CTCB07 glycogen debranching protein YP_062360.1 1488686 D 281090 CDS YP_062361.1 50955073 2940113 1489552..1490763 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 1490763 tnp 2940113 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_062361.1 1489552 D 281090 CDS YP_062362.1 50955074 2938570 1492658..1492765 1 NC_006087.1 hypothetical protein 1492765 2938570 Lxx14450 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062362.1 1492658 D 281090 CDS YP_062363.1 50955075 2940544 1493988..1495355 1 NC_006087.1 identified by sequence similarity; acyl-CoA synthetase 1495355 2940544 Lxx14445 Leifsonia xyli subsp. xyli str. CTCB07 acyl-CoA synthetase YP_062363.1 1493988 D 281090 CDS YP_062364.1 50955076 2939852 complement(1498435..1498827) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1498827 2939852 Lxx14457 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062364.1 1498435 R 281090 CDS YP_062365.1 50955077 2939509 complement(1499188..1499994) 1 NC_006087.1 identified by sequence similarity; undecaprenyl pyrophosphate synthetase 1499994 uppS 2939509 uppS Leifsonia xyli subsp. xyli str. CTCB07 undecaprenyl pyrophosphate synthetase YP_062365.1 1499188 R 281090 CDS YP_062366.1 50955078 2938985 complement(1499991..1500740) 1 NC_006087.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1500740 recO 2938985 recO Leifsonia xyli subsp. xyli str. CTCB07 DNA repair protein RecO YP_062366.1 1499991 R 281090 CDS YP_062367.1 50955079 2939097 1500773..1501531 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1501531 2939097 Lxx14480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062367.1 1500773 D 281090 CDS YP_062368.2 161760707 2939256 complement(1501628..1503373) 1 NC_006087.1 identified by sequence similarity; 2-isopropylmalate synthase 1503373 leuA 2939256 leuA Leifsonia xyli subsp. xyli str. CTCB07 2-isopropylmalate synthase YP_062368.2 1501628 R 281090 CDS YP_062369.1 50955081 2939666 complement(1503539..1505929) 1 NC_006087.1 identified by sequence similarity; lysyl-tRNA synthetase 1505929 lysX 2939666 lysX Leifsonia xyli subsp. xyli str. CTCB07 lysyl-tRNA synthetase YP_062369.1 1503539 R 281090 CDS YP_062370.1 50955082 2939987 complement(1506082..1507392) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1507392 2939987 Lxx14510 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062370.1 1506082 R 281090 CDS YP_062371.1 50955083 2939635 complement(1507499..1508767) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1508767 2939635 Lxx14520 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062371.1 1507499 R 281090 CDS YP_062372.1 50955084 2939241 complement(1508935..1509666) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1509666 2939241 Lxx14530 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062372.1 1508935 R 281090 CDS YP_062373.1 50955085 2938736 complement(1509765..1510436) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 1510436 2938736 Lxx14540 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062373.1 1509765 R 281090 CDS YP_062374.1 50955086 2939922 complement(1510439..1511752) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 1511752 baeS 2939922 baeS Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062374.1 1510439 R 281090 CDS YP_062375.1 50955087 2938781 complement(1514296..1515189) 1 NC_006087.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1515189 era 2938781 era Leifsonia xyli subsp. xyli str. CTCB07 GTP-binding protein Era YP_062375.1 1514296 R 281090 CDS YP_062376.1 50955088 2940088 complement(1515186..1516496) 1 NC_006087.1 identified by sequence similarity; hemolysin 1516496 tlyC 2940088 tlyC Leifsonia xyli subsp. xyli str. CTCB07 hemolysin YP_062376.1 1515186 R 281090 CDS YP_062377.1 50955089 2940555 complement(1516545..1517006) 1 NC_006087.1 identified by sequence similarity; metalloprotease 1517006 ybeY 2940555 ybeY Leifsonia xyli subsp. xyli str. CTCB07 metalloprotease YP_062377.1 1516545 R 281090 CDS YP_062378.1 50955090 2938451 complement(1517003..1518106) 1 NC_006087.1 identified by sequence similarity; phosphate starvation-induced protein 1518106 phoH 2938451 phoH Leifsonia xyli subsp. xyli str. CTCB07 phosphate starvation-induced protein YP_062378.1 1517003 R 281090 CDS YP_062379.1 50955091 2939356 complement(1518093..1518491) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1518491 2939356 Lxx14620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062379.1 1518093 R 281090 CDS YP_062380.1 50955092 2939501 complement(1518488..1519213) 1 NC_006087.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1519213 2939501 Lxx14630 Leifsonia xyli subsp. xyli str. CTCB07 16S ribosomal RNA methyltransferase RsmE YP_062380.1 1518488 R 281090 CDS YP_062381.1 50955093 2939676 complement(1519215..1520324) 1 NC_006087.1 identified by sequence similarity; DnaJ protein 1520324 dnaJ 2939676 dnaJ Leifsonia xyli subsp. xyli str. CTCB07 DnaJ protein YP_062381.1 1519215 R 281090 CDS YP_062382.1 50955094 2938705 complement(1520395..1521414) 1 NC_006087.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1521414 hrcA 2938705 hrcA Leifsonia xyli subsp. xyli str. CTCB07 heat-inducible transcription repressor YP_062382.1 1520395 R 281090 CDS YP_062383.1 50955095 2939770 1521658..1522035 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1522035 2939770 Lxx14660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062383.1 1521658 D 281090 CDS YP_062384.1 50955096 2940535 complement(1522048..1523289) 1 NC_006087.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1523289 hemN 2940535 hemN Leifsonia xyli subsp. xyli str. CTCB07 coproporphyrinogen III oxidase YP_062384.1 1522048 R 281090 CDS YP_062385.1 50955097 2939091 complement(1523289..1523864) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1523864 2939091 Lxx14680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062385.1 1523289 R 281090 CDS YP_062386.1 50955098 2938960 complement(1524052..1525902) 1 NC_006087.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1525902 lepA 2938960 lepA Leifsonia xyli subsp. xyli str. CTCB07 GTP-binding protein LepA YP_062386.1 1524052 R 281090 CDS YP_062387.1 50955099 2939268 1526254..1527219 1 NC_006087.1 identified by sequence similarity; NAD dependent epimerase/dehydratase 1527219 2939268 Lxx14700 Leifsonia xyli subsp. xyli str. CTCB07 NAD dependent epimerase/dehydratase YP_062387.1 1526254 D 281090 CDS YP_062388.1 50955100 2939566 1527326..1527586 1 NC_006087.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1527586 rpsT 2939566 rpsT Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S20 YP_062388.1 1527326 D 281090 CDS YP_062389.1 50955101 2939563 complement(1527708..1528748) 1 NC_006087.1 identified by sequence similarity; DNA polymerase III subunit delta 1528748 2939563 Lxx14720 Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase III subunit delta YP_062389.1 1527708 R 281090 CDS YP_062390.1 50955102 2938793 complement(1533301..1534803) 1 NC_006087.1 identified by sequence similarity; sugar transporter 1534803 2938793 Lxx14750 Leifsonia xyli subsp. xyli str. CTCB07 sugar transporter YP_062390.1 1533301 R 281090 CDS YP_062391.1 50955103 2940536 complement(1537083..1538318) 1 NC_006087.1 identified by sequence similarity; DNA processing factor 1538318 smf 2940536 smf Leifsonia xyli subsp. xyli str. CTCB07 DNA processing factor YP_062391.1 1537083 R 281090 CDS YP_062392.1 50955104 2940212 complement(1538785..1540320) 1 NC_006087.1 identified by sequence similarity; competence protein M 1540320 comM 2940212 comM Leifsonia xyli subsp. xyli str. CTCB07 competence protein M YP_062392.1 1538785 R 281090 CDS YP_062393.1 50955105 2938659 complement(1540320..1540676) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1540676 2938659 Lxx14785 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062393.1 1540320 R 281090 CDS YP_062394.1 50955106 2938495 complement(1540822..1541145) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1541145 2938495 Lxx14800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062394.1 1540822 R 281090 CDS YP_062395.1 50955107 2939409 complement(1541158..1541838) 1 NC_006087.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1541838 rnhB 2939409 rnhB Leifsonia xyli subsp. xyli str. CTCB07 ribonuclease HII YP_062395.1 1541158 R 281090 CDS YP_062396.1 50955108 2939254 complement(1542063..1542410) 1 NC_006087.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1542410 rplS 2939254 rplS Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L19 YP_062396.1 1542063 R 281090 CDS YP_062397.1 50955109 2938350 1543168..1543977 1 NC_006087.1 identified by sequence similarity; methionine aminopeptidase 1543977 map 2938350 map Leifsonia xyli subsp. xyli str. CTCB07 methionine aminopeptidase YP_062397.1 1543168 D 281090 CDS YP_062398.1 50955110 2939715 complement(1544001..1544684) 1 NC_006087.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1544684 trmD 2939715 trmD Leifsonia xyli subsp. xyli str. CTCB07 tRNA (guanine-N(1)-)-methyltransferase YP_062398.1 1544001 R 281090 CDS YP_062399.1 50955111 2940237 complement(1544707..1545879) 1 NC_006087.1 identified by sequence similarity; sugar transporter 1545879 2940237 Lxx14870 Leifsonia xyli subsp. xyli str. CTCB07 sugar transporter YP_062399.1 1544707 R 281090 CDS YP_062400.1 50955112 2938660 1545904..1546536 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1546536 2938660 Lxx14860 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062400.1 1545904 D 281090 CDS YP_062401.1 50955113 2939604 complement(1546658..1547311) 1 NC_006087.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1547311 rimM 2939604 rimM Leifsonia xyli subsp. xyli str. CTCB07 16S rRNA-processing protein RimM YP_062401.1 1546658 R 281090 CDS YP_062402.1 50955114 2939829 complement(1547313..1547543) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1547543 2939829 Lxx14890 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062402.1 1547313 R 281090 CDS YP_062403.1 50955115 2939973 complement(1547548..1548009) 1 NC_006087.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1548009 rpsP 2939973 rpsP Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S16 YP_062403.1 1547548 R 281090 CDS YP_062404.1 50955116 2938439 1548210..1549346 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1549346 2938439 Lxx14910 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062404.1 1548210 D 281090 CDS YP_062405.1 50955117 2940564 1549477..1550049 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1550049 2940564 Lxx14920 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062405.1 1549477 D 281090 CDS YP_062406.1 50955118 2939948 1550882..1552093 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 1552093 tnp 2939948 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_062406.1 1550882 D 281090 CDS YP_062407.1 50955119 2938454 1552099..1553442 1 NC_006087.1 identified by sequence similarity; glycoprotein 1553442 2938454 Lxx14940 Leifsonia xyli subsp. xyli str. CTCB07 glycoprotein YP_062407.1 1552099 D 281090 CDS YP_062408.1 50955120 2940373 complement(1553508..1555079) 1 NC_006087.1 identified by sequence similarity; signal recognition particle subunit SRP54 1555079 ffh 2940373 ffh Leifsonia xyli subsp. xyli str. CTCB07 signal recognition particle subunit SRP54 YP_062408.1 1553508 R 281090 CDS YP_062409.1 50955121 2940385 complement(1555123..1555623) 1 NC_006087.1 hypothetical protein 1555623 2940385 Lxx14960 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062409.1 1555123 R 281090 CDS YP_062410.1 50955122 2938418 complement(1555623..1556498) 1 NC_006087.1 identified by sequence similarity; signal recognition particle receptor 1556498 ftsY 2938418 ftsY Leifsonia xyli subsp. xyli str. CTCB07 signal recognition particle receptor YP_062410.1 1555623 R 281090 CDS YP_062411.1 50955123 2940162 complement(1556595..1560140) 1 NC_006087.1 identified by sequence similarity; chromosome segregation protein 1560140 smc 2940162 smc Leifsonia xyli subsp. xyli str. CTCB07 chromosome segregation protein YP_062411.1 1556595 R 281090 CDS YP_062412.1 50955124 2940556 1560255..1561664 1 NC_006087.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1561664 2940556 Lxx14980 Leifsonia xyli subsp. xyli str. CTCB07 threonine synthase YP_062412.1 1560255 D 281090 CDS YP_062413.1 50955125 2939938 complement(1561680..1562039) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1562039 livF 2939938 livF Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062413.1 1561680 R 281090 CDS YP_062414.1 50955126 2939397 complement(1562043..1562318) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1562318 2939397 Lxx15010 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062414.1 1562043 R 281090 CDS YP_062415.1 50955127 2940161 complement(1562380..1563669) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1563669 2940161 Lxx15020 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062415.1 1562380 R 281090 CDS YP_062416.1 50955128 2938312 complement(1564765..1565097) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1565097 2938312 Lxx15030 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062416.1 1564765 R 281090 CDS YP_062417.1 50955129 2940437 complement(1565192..1566865) 1 NC_006087.1 identified by sequence similarity; cytochrome C oxidase subunit I 1566865 ctaD 2940437 ctaD Leifsonia xyli subsp. xyli str. CTCB07 cytochrome C oxidase subunit I YP_062417.1 1565192 R 281090 CDS YP_062418.1 50955130 2938528 complement(1566949..1567839) 1 NC_006087.1 identified by sequence similarity; cytochrome C oxidase subunit II 1567839 ctaC 2938528 ctaC Leifsonia xyli subsp. xyli str. CTCB07 cytochrome C oxidase subunit II YP_062418.1 1566949 R 281090 CDS YP_062419.1 50955131 2938699 complement(1567986..1568342) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1568342 2938699 Lxx15060 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062419.1 1567986 R 281090 CDS YP_062420.1 50955132 2939717 complement(1568421..1569776) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1569776 2939717 Lxx15080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062420.1 1568421 R 281090 CDS YP_062421.1 50955133 2938452 1569841..1570482 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1570482 2938452 Lxx15070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062421.1 1569841 D 281090 CDS YP_062422.1 50955134 2939295 1570484..1571362 1 NC_006087.1 catalyzes the endonucleolytic cleavage to 5'-phosphomonomer; ribonuclease H 1571362 2939295 Lxx15090 Leifsonia xyli subsp. xyli str. CTCB07 ribonuclease H YP_062422.1 1570484 D 281090 CDS YP_062423.1 50955135 2940206 complement(1571417..1572448) 1 NC_006087.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1572448 pyrD 2940206 pyrD Leifsonia xyli subsp. xyli str. CTCB07 dihydroorotate dehydrogenase 2 YP_062423.1 1571417 R 281090 CDS YP_062424.1 50955136 2940562 complement(1572475..1572948) 1 NC_006087.1 identified by sequence similarity; transcriptional regulator NrdR 1572948 nrdR 2940562 nrdR Leifsonia xyli subsp. xyli str. CTCB07 transcriptional regulator NrdR YP_062424.1 1572475 R 281090 CDS YP_062425.1 50955137 2940014 complement(1572987..1574297) 1 NC_006087.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1574297 hisD 2940014 hisD Leifsonia xyli subsp. xyli str. CTCB07 histidinol dehydrogenase YP_062425.1 1572987 R 281090 CDS YP_062426.1 50955138 2938904 1574363..1574878 1 NC_006087.1 identified by sequence similarity; flavin-dependent reductase 1574878 2938904 Lxx15130 Leifsonia xyli subsp. xyli str. CTCB07 flavin-dependent reductase YP_062426.1 1574363 D 281090 CDS YP_062427.1 50955139 2939684 complement(1575846..1579361) 1 NC_006087.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1579361 dnaE 2939684 dnaE Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase III subunit alpha YP_062427.1 1575846 R 281090 CDS YP_062428.1 50955140 2939377 complement(1579489..1580409) 1 NC_006087.1 identified by sequence similarity; ribosomal large subunit pseudouridine synthase 1580409 rlu 2939377 rlu Leifsonia xyli subsp. xyli str. CTCB07 ribosomal large subunit pseudouridine synthase YP_062428.1 1579489 R 281090 CDS YP_062429.1 50955141 2939351 complement(1580409..1580921) 1 NC_006087.1 identified by sequence similarity; signal peptidase II 1580921 lspA 2939351 lspA Leifsonia xyli subsp. xyli str. CTCB07 signal peptidase II YP_062429.1 1580409 R 281090 CDS YP_062430.1 50955142 2939754 complement(1580992..1581813) 1 NC_006087.1 identified by sequence similarity; cell division initiation protein 1581813 2939754 Lxx15190 Leifsonia xyli subsp. xyli str. CTCB07 cell division initiation protein YP_062430.1 1580992 R 281090 CDS YP_062431.1 50955143 2940191 complement(1581958..1582254) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1582254 2940191 Lxx15200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062431.1 1581958 R 281090 CDS YP_062432.1 50955144 2940328 complement(1582337..1582819) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1582819 2940328 Lxx15210 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062432.1 1582337 R 281090 CDS YP_062433.1 50955145 2939958 complement(1582907..1583551) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1583551 2939958 Lxx15220 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062433.1 1582907 R 281090 CDS YP_062434.1 50955146 2938365 complement(1583577..1584725) 1 NC_006087.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1584725 ftsZ 2938365 ftsZ Leifsonia xyli subsp. xyli str. CTCB07 cell division protein FtsZ YP_062434.1 1583577 R 281090 CDS YP_062435.1 50955147 2940146 complement(1584906..1585787) 1 NC_006087.1 identified by sequence similarity; cell division protein FtsQ 1585787 ftsQ 2940146 ftsQ Leifsonia xyli subsp. xyli str. CTCB07 cell division protein FtsQ YP_062435.1 1584906 R 281090 CDS YP_062436.1 50955148 2940458 complement(1585875..1587269) 1 NC_006087.1 identified by sequence similarity; UDP-N-acetylmuramate-alanine ligase 1587269 murC 2940458 murC Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylmuramate-alanine ligase YP_062436.1 1585875 R 281090 CDS YP_062437.1 50955149 2939801 complement(1587329..1588405) 1 NC_006087.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1588405 murG 2939801 murG Leifsonia xyli subsp. xyli str. CTCB07 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_062437.1 1587329 R 281090 CDS YP_062438.1 50955150 2940250 complement(1588402..1589616) 1 NC_006087.1 identified by sequence similarity; cell division protein 1589616 ftsW 2940250 ftsW Leifsonia xyli subsp. xyli str. CTCB07 cell division protein YP_062438.1 1588402 R 281090 CDS YP_062439.1 50955151 2940407 complement(1589576..1591129) 1 NC_006087.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1591129 murD 2940407 murD Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_062439.1 1589576 R 281090 CDS YP_062440.1 50955152 2938450 complement(1591126..1592241) 1 NC_006087.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1592241 mraY 2938450 mraY Leifsonia xyli subsp. xyli str. CTCB07 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_062440.1 1591126 R 281090 CDS YP_062441.1 50955153 2940462 complement(1592238..1593665) 1 NC_006087.1 identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase 1593665 murF 2940462 murF Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase YP_062441.1 1592238 R 281090 CDS YP_062442.1 50955154 2939661 complement(1593666..1595210) 1 NC_006087.1 identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1595210 murE 2939661 murE Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_062442.1 1593666 R 281090 CDS YP_062443.1 50955155 2938433 complement(1595222..1596964) 1 NC_006087.1 identified by sequence similarity; penicillin binding protein transpeptidase domain-containing protein 1596964 2938433 Lxx15320 Leifsonia xyli subsp. xyli str. CTCB07 penicillin binding protein transpeptidase domain-containing protein YP_062443.1 1595222 R 281090 CDS YP_062444.1 50955156 2940061 complement(1596988..1597656) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1597656 2940061 Lxx15330 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062444.1 1596988 R 281090 CDS YP_062445.1 50955157 2939576 complement(1597668..1598645) 1 NC_006087.1 identified by sequence similarity; S-adenosyl-methyltransferase MraW 1598645 mraW 2939576 mraW Leifsonia xyli subsp. xyli str. CTCB07 S-adenosyl-methyltransferase MraW YP_062445.1 1597668 R 281090 CDS YP_062446.1 50955158 2939674 complement(1598749..1599180) 1 NC_006087.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1599180 2939674 Lxx15350 Leifsonia xyli subsp. xyli str. CTCB07 cell division protein MraZ YP_062446.1 1598749 R 281090 CDS YP_062447.1 50955159 2940387 complement(1599524..1599901) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1599901 2940387 Lxx15360 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062447.1 1599524 R 281090 CDS YP_062448.1 50955160 2939573 1599982..1601100 1 NC_006087.1 identified by sequence similarity; geranylgeranyl pyrophosphate synthase 1601100 gds 2939573 gds Leifsonia xyli subsp. xyli str. CTCB07 geranylgeranyl pyrophosphate synthase YP_062448.1 1599982 D 281090 CDS YP_062449.1 50955161 2940094 complement(1601113..1601487) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1601487 2940094 Lxx15380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062449.1 1601113 R 281090 CDS YP_062450.1 50955162 2939589 1601604..1602665 1 NC_006087.1 identified by sequence similarity; lipoprotein 1602665 2939589 Lxx15390 Leifsonia xyli subsp. xyli str. CTCB07 lipoprotein YP_062450.1 1601604 D 281090 CDS YP_062451.1 50955163 2938429 1602751..1604652 1 NC_006087.1 identified by sequence similarity; serine/threonine kinase 1604652 pkaF 2938429 pkaF Leifsonia xyli subsp. xyli str. CTCB07 serine/threonine kinase YP_062451.1 1602751 D 281090 CDS YP_062452.1 50955164 2939400 complement(1604818..1606146) 1 NC_006087.1 identified by sequence similarity; 2-dehydro-3-deoxyphosphooctonate aldolase 1606146 aro 2939400 aro Leifsonia xyli subsp. xyli str. CTCB07 2-dehydro-3-deoxyphosphooctonate aldolase YP_062452.1 1604818 R 281090 CDS YP_062453.1 50955165 2939815 complement(1606284..1606973) 1 NC_006087.1 identified by sequence similarity; 1-acylglycerol-3-phosphate O-acyltransferase 1606973 plsC 2939815 plsC Leifsonia xyli subsp. xyli str. CTCB07 1-acylglycerol-3-phosphate O-acyltransferase YP_062453.1 1606284 R 281090 CDS YP_062454.1 50955166 2939232 complement(1607016..1607879) 1 NC_006087.1 identified by sequence similarity; glucokinase 1607879 glkA 2939232 glkA Leifsonia xyli subsp. xyli str. CTCB07 glucokinase YP_062454.1 1607016 R 281090 CDS YP_062455.1 50955167 2940184 1608121..1609947 1 NC_006087.1 identified by sequence similarity; long-chain-fatty-acid-CoA ligase 1609947 fadD 2940184 fadD Leifsonia xyli subsp. xyli str. CTCB07 long-chain-fatty-acid-CoA ligase YP_062455.1 1608121 D 281090 CDS YP_062456.1 50955168 2939114 complement(1610085..1610576) 1 NC_006087.1 identified by sequence similarity; polypeptide deformylase 1610576 2939114 Lxx15450 Leifsonia xyli subsp. xyli str. CTCB07 polypeptide deformylase YP_062456.1 1610085 R 281090 CDS YP_062457.1 50955169 2940112 complement(1610627..1611937) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1611937 2940112 Lxx15460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062457.1 1610627 R 281090 CDS YP_062458.1 50955170 2938480 complement(1611996..1615400) 1 NC_006087.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1615400 pycA 2938480 pycA Leifsonia xyli subsp. xyli str. CTCB07 pyruvate carboxylase YP_062458.1 1611996 R 281090 CDS YP_062459.1 50955171 2939224 1615472..1616290 1 NC_006087.1 identified by sequence similarity; plasmid partitioning protein 1616290 parA 2939224 parA Leifsonia xyli subsp. xyli str. CTCB07 plasmid partitioning protein YP_062459.1 1615472 D 281090 CDS YP_062460.1 50955172 2939274 complement(1616396..1616998) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1616998 2939274 Lxx15490 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062460.1 1616396 R 281090 CDS YP_062461.1 50955173 2940131 complement(1617075..1617767) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1617767 2940131 Lxx15500 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062461.1 1617075 R 281090 CDS YP_062462.1 50955174 2939511 complement(1617767..1618150) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1618150 2939511 Lxx15505 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062462.1 1617767 R 281090 CDS YP_062463.1 50955175 2938448 complement(1618275..1618904) 1 NC_006087.1 identified by sequence similarity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1618904 pgsA 2938448 pgsA Leifsonia xyli subsp. xyli str. CTCB07 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_062463.1 1618275 R 281090 CDS YP_062464.1 50955176 2939690 1619574..1620080 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1620080 2939690 Lxx15530 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062464.1 1619574 D 281090 CDS YP_062465.1 50955177 2940423 1620067..1620423 1 NC_006087.1 identified by sequence similarity; ribosome-associated heat shock protein 1620423 2940423 Lxx15550 Leifsonia xyli subsp. xyli str. CTCB07 ribosome-associated heat shock protein YP_062465.1 1620067 D 281090 CDS YP_062466.1 50955178 2940547 complement(1620434..1621378) 1 NC_006087.1 identified by sequence similarity; heat shock protein 1621378 2940547 Lxx15555 Leifsonia xyli subsp. xyli str. CTCB07 heat shock protein YP_062466.1 1620434 R 281090 CDS YP_062467.1 50955179 2939312 1621506..1621886 1 NC_006087.1 identified by sequence similarity; lyase 1621886 2939312 Lxx15560 Leifsonia xyli subsp. xyli str. CTCB07 lyase YP_062467.1 1621506 D 281090 CDS YP_062468.1 50955180 2939885 complement(1621945..1622820) 1 NC_006087.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 1622820 ubiA 2939885 ubiA Leifsonia xyli subsp. xyli str. CTCB07 prenyltransferase YP_062468.1 1621945 R 281090 CDS YP_062469.1 50955181 2940601 complement(1622817..1623140) 1 NC_006087.1 identified by sequence similarity; lycopene e-cyclase isoprenoid transferase B 1623140 lctB 2940601 lctB Leifsonia xyli subsp. xyli str. CTCB07 lycopene e-cyclase isoprenoid transferase B YP_062469.1 1622817 R 281090 CDS YP_062470.1 50955182 2938665 complement(1623137..1623460) 1 NC_006087.1 identified by sequence similarity; C50 carotenoid epsilon cyclase 1623460 crtYe 2938665 crtYe Leifsonia xyli subsp. xyli str. CTCB07 C50 carotenoid epsilon cyclase YP_062470.1 1623137 R 281090 CDS YP_062471.1 50955183 2939957 complement(1623457..1625046) 1 NC_006087.1 identified by sequence similarity; phytoene dehydrogenase 1625046 crtI 2939957 crtI Leifsonia xyli subsp. xyli str. CTCB07 phytoene dehydrogenase YP_062471.1 1623457 R 281090 CDS YP_062472.1 50955184 2938437 complement(1625043..1625939) 1 NC_006087.1 identified by sequence similarity; phytoene synthase 1625939 crtB 2938437 crtB Leifsonia xyli subsp. xyli str. CTCB07 phytoene synthase YP_062472.1 1625043 R 281090 CDS YP_062473.1 50955185 2938298 complement(1625936..1627051) 1 NC_006087.1 identified by sequence similarity; geranylgeranyl pyrophosphate synthase 1627051 crtE 2938298 crtE Leifsonia xyli subsp. xyli str. CTCB07 geranylgeranyl pyrophosphate synthase YP_062473.1 1625936 R 281090 CDS YP_062474.1 50955186 2940070 1627121..1627627 1 NC_006087.1 identified by sequence similarity; MarR family transcriptional regulator 1627627 2940070 Lxx15640 Leifsonia xyli subsp. xyli str. CTCB07 MarR family transcriptional regulator YP_062474.1 1627121 D 281090 CDS YP_062475.1 50955187 2939789 complement(1627602..1629092) 1 NC_006087.1 identified by sequence similarity; nucleoside-diphosphate-sugar epimerase 1629092 2939789 Lxx15650 Leifsonia xyli subsp. xyli str. CTCB07 nucleoside-diphosphate-sugar epimerase YP_062475.1 1627602 R 281090 CDS YP_062476.1 50955188 2940604 1629201..1629539 1 NC_006087.1 hypothetical protein 1629539 2940604 Lxx15660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062476.1 1629201 D 281090 CDS YP_062477.1 50955189 2939746 complement(1629861..1630787) 1 NC_006087.1 identified by sequence similarity; ECF subfamily RNA polymerase sigma-70 factor 1630787 2939746 Lxx15670 Leifsonia xyli subsp. xyli str. CTCB07 ECF subfamily RNA polymerase sigma-70 factor YP_062477.1 1629861 R 281090 CDS YP_062478.1 50955190 2940032 complement(1630979..1631857) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1631857 2940032 Lxx15680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062478.1 1630979 R 281090 CDS YP_062479.1 50955191 2939965 complement(1636194..1636838) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1636838 2939965 Lxx15760 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062479.1 1636194 R 281090 CDS YP_062480.1 50955192 2939267 complement(1636853..1637875) 1 NC_006087.1 identified by sequence similarity; glycine betaine/proline porter 1637875 proV 2939267 proV Leifsonia xyli subsp. xyli str. CTCB07 glycine betaine/proline porter YP_062480.1 1636853 R 281090 CDS YP_062481.1 50955193 2938444 complement(1637880..1638725) 1 NC_006087.1 identified by sequence similarity; ABC-type transport systems, periplasmic component 1638725 2938444 Lxx15780 Leifsonia xyli subsp. xyli str. CTCB07 ABC-type transport systems, periplasmic component YP_062481.1 1637880 R 281090 CDS YP_062482.1 50955194 2940552 complement(1638957..1642082) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1642082 2940552 Lxx15790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062482.1 1638957 R 281090 CDS YP_062483.1 50955195 2940442 1643308..1643439 1 NC_006087.1 hypothetical protein 1643439 2940442 Lxx15800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062483.1 1643308 D 281090 CDS YP_062484.1 50955196 2940022 1644326..1645537 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 1645537 tnp 2940022 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_062484.1 1644326 D 281090 CDS YP_062485.1 50955197 2938333 complement(1646691..1647551) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1647551 2938333 Lxx15820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062485.1 1646691 R 281090 CDS YP_062486.1 50955198 2939510 complement(1647535..1648281) 1 NC_006087.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis; phosphoribosyl isomerase A 1648281 hisA 2939510 hisA Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosyl isomerase A YP_062486.1 1647535 R 281090 CDS YP_062487.1 50955199 2939440 complement(1648328..1648957) 1 NC_006087.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1648957 hisH 2939440 hisH Leifsonia xyli subsp. xyli str. CTCB07 imidazole glycerol phosphate synthase subunit HisH YP_062487.1 1648328 R 281090 CDS YP_062488.1 50955200 2940203 complement(1648954..1649556) 1 NC_006087.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 1649556 hisB 2940203 hisB Leifsonia xyli subsp. xyli str. CTCB07 imidazoleglycerol-phosphate dehydratase YP_062488.1 1648954 R 281090 CDS YP_062489.1 50955201 2938704 complement(1649553..1650668) 1 NC_006087.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1650668 hisC1 2938704 hisC1 Leifsonia xyli subsp. xyli str. CTCB07 histidinol-phosphate aminotransferase YP_062489.1 1649553 R 281090 CDS YP_062490.1 50955202 2939128 complement(1651385..1651615) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1651615 2939128 Lxx15870 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062490.1 1651385 R 281090 CDS YP_062491.1 50955203 2938969 1652082..1652756 1 NC_006087.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1652756 lexA 2938969 lexA Leifsonia xyli subsp. xyli str. CTCB07 LexA repressor YP_062491.1 1652082 D 281090 CDS YP_062492.1 50955204 2938915 complement(1652831..1653505) 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 1653505 2938915 Lxx15885 Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_062492.1 1652831 R 281090 CDS YP_062493.1 50955205 2940461 1653730..1655001 1 NC_006087.1 identified by sequence similarity; membrane efflux protein (fosmidomycin resistance) 1655001 fsr 2940461 fsr Leifsonia xyli subsp. xyli str. CTCB07 membrane efflux protein (fosmidomycin resistance) YP_062493.1 1653730 D 281090 CDS YP_062494.1 50955206 2940570 complement(1660036..1661505) 1 NC_006087.1 identified by sequence similarity; GTP-binding protein 1661505 hflX 2940570 hflX Leifsonia xyli subsp. xyli str. CTCB07 GTP-binding protein YP_062494.1 1660036 R 281090 CDS YP_062495.1 50955207 2938440 1661611..1662222 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1662222 2938440 Lxx15950 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062495.1 1661611 D 281090 CDS YP_062496.1 50955208 2938253 complement(1662267..1663145) 1 NC_006087.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1663145 dapF 2938253 dapF Leifsonia xyli subsp. xyli str. CTCB07 diaminopimelate epimerase YP_062496.1 1662267 R 281090 CDS YP_062497.1 50955209 2939541 complement(1663148..1663939) 1 NC_006087.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1663939 miaA 2939541 miaA Leifsonia xyli subsp. xyli str. CTCB07 tRNA delta(2)-isopentenylpyrophosphate transferase YP_062497.1 1663148 R 281090 CDS YP_062498.1 50955210 2940344 complement(1664074..1665681) 1 NC_006087.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1665681 2940344 Lxx15990 Leifsonia xyli subsp. xyli str. CTCB07 (dimethylallyl)adenosine tRNA methylthiotransferase YP_062498.1 1664074 R 281090 CDS YP_062499.1 50955211 2938934 complement(1665810..1665968) 1 NC_006087.1 hypothetical protein 1665968 2938934 Lxx16000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062499.1 1665810 R 281090 CDS YP_062500.1 50955212 2940255 complement(1667147..1667755) 1 NC_006087.1 hypothetical protein 1667755 2940255 Lxx16020 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062500.1 1667147 R 281090 CDS YP_062501.1 50955213 2938520 complement(1667787..1668911) 1 NC_006087.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1668911 recA 2938520 recA Leifsonia xyli subsp. xyli str. CTCB07 recombinase A YP_062501.1 1667787 R 281090 CDS YP_062502.1 50955214 2938425 complement(1669029..1669274) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1669274 2938425 Lxx16040 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062502.1 1669029 R 281090 CDS YP_062503.1 50955215 2938371 complement(1669322..1669633) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1669633 2938371 Lxx16050 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062503.1 1669322 R 281090 CDS YP_062504.1 50955216 2938782 complement(1669781..1670266) 1 NC_006087.1 identified by sequence similarity; CinA-like protein 1670266 2938782 Lxx16060 Leifsonia xyli subsp. xyli str. CTCB07 CinA-like protein YP_062504.1 1669781 R 281090 CDS YP_062505.1 50955217 2940201 complement(1670292..1670861) 1 NC_006087.1 identified by sequence similarity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1670861 pgsA 2940201 pgsA Leifsonia xyli subsp. xyli str. CTCB07 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_062505.1 1670292 R 281090 CDS YP_062506.1 50955218 2938398 complement(1670917..1673706) 1 NC_006087.1 identified by sequence similarity; cell division protein 1673706 ftsK 2938398 ftsK Leifsonia xyli subsp. xyli str. CTCB07 cell division protein YP_062506.1 1670917 R 281090 CDS YP_062507.1 50955219 2940451 complement(1674015..1675691) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1675691 2940451 Lxx16090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062507.1 1674015 R 281090 CDS YP_062508.1 50955220 2939848 1676957..1677382 1 NC_006087.1 identified by sequence similarity; ATP/GTP binding protein 1677382 2939848 Lxx16110 Leifsonia xyli subsp. xyli str. CTCB07 ATP/GTP binding protein YP_062508.1 1676957 D 281090 CDS YP_062509.1 50955221 2939359 1677413..1678303 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1678303 2939359 Lxx16130 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062509.1 1677413 D 281090 CDS YP_062510.1 50955222 2939282 complement(1678317..1678748) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1678748 2939282 Lxx16140 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062510.1 1678317 R 281090 CDS YP_062511.1 50955223 2939496 complement(1678785..1679552) 1 NC_006087.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1679552 dapB 2939496 dapB Leifsonia xyli subsp. xyli str. CTCB07 dihydrodipicolinate reductase YP_062511.1 1678785 R 281090 CDS YP_062512.1 50955224 2940450 complement(1680109..1680690) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1680690 2940450 Lxx16170 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062512.1 1680109 R 281090 CDS YP_062513.1 50955225 2940349 complement(1680745..1682190) 1 NC_006087.1 identified by sequence similarity; zinc protease 1682190 pepR 2940349 pepR Leifsonia xyli subsp. xyli str. CTCB07 zinc protease YP_062513.1 1680745 R 281090 CDS YP_062514.1 50955226 2939423 1682280..1682864 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 1682864 2939423 Lxx16190 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_062514.1 1682280 D 281090 CDS YP_062515.1 50955227 2939562 complement(1682868..1683812) 1 NC_006087.1 identified by sequence similarity; oxidoreductase 1683812 2939562 Lxx16200 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_062515.1 1682868 R 281090 CDS YP_062516.1 50955228 2940588 complement(1686991..1688268) 1 NC_006087.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1688268 gltA 2940588 gltA Leifsonia xyli subsp. xyli str. CTCB07 type II citrate synthase YP_062516.1 1686991 R 281090 CDS YP_062517.1 50955229 2939441 complement(1688459..1689577) 1 NC_006087.1 catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis; N-succinyldiaminopimelate aminotransferase 1689577 2939441 Lxx16230 Leifsonia xyli subsp. xyli str. CTCB07 N-succinyldiaminopimelate aminotransferase YP_062517.1 1688459 R 281090 CDS YP_062518.1 50955230 2938979 complement(1689579..1689899) 1 NC_006087.1 identified by sequence similarity; ferredoxin 1689899 2938979 Lxx16240 Leifsonia xyli subsp. xyli str. CTCB07 ferredoxin YP_062518.1 1689579 R 281090 CDS YP_062519.1 50955231 2940300 complement(1689985..1690359) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1690359 2940300 Lxx16250 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062519.1 1689985 R 281090 CDS YP_062520.1 50955232 2939913 1690486..1691352 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1691352 2939913 Lxx16260 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062520.1 1690486 D 281090 CDS YP_062521.1 50955233 2938641 1691397..1692602 1 NC_006087.1 identified by sequence similarity; lipoprotein 1692602 2938641 Lxx16270 Leifsonia xyli subsp. xyli str. CTCB07 lipoprotein YP_062521.1 1691397 D 281090 CDS YP_062522.1 50955234 2940352 1692610..1693920 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1693920 2940352 Lxx16280 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062522.1 1692610 D 281090 CDS YP_062523.1 50955235 2939542 complement(1694032..1695948) 1 NC_006087.1 identified by sequence similarity; GTP-binding protein elongation factor 1695948 2939542 Lxx16290 Leifsonia xyli subsp. xyli str. CTCB07 GTP-binding protein elongation factor YP_062523.1 1694032 R 281090 CDS YP_062524.1 50955236 2940134 complement(1698567..1699496) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1699496 dppB 2940134 dppB Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062524.1 1698567 R 281090 CDS YP_062525.1 50955237 2940166 complement(1699560..1701113) 1 NC_006087.1 identified by sequence similarity; ABC transporter solute-binding protein 1701113 dppA 2940166 dppA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter solute-binding protein YP_062525.1 1699560 R 281090 CDS YP_062526.1 50955238 2940023 complement(1701457..1703262) 1 NC_006087.1 identified by sequence similarity; oligopeptide transporter 1703262 dppF 2940023 dppF Leifsonia xyli subsp. xyli str. CTCB07 oligopeptide transporter YP_062526.1 1701457 R 281090 CDS YP_062527.1 50955239 2940069 1703382..1704008 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1704008 2940069 Lxx16370 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062527.1 1703382 D 281090 CDS YP_062528.1 50955240 2939117 complement(1704056..1705066) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1705066 oppC 2939117 oppC Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062528.1 1704056 R 281090 CDS YP_062529.1 50955241 2940153 complement(1705066..1706532) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1706532 oppB 2940153 oppB Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062529.1 1705066 R 281090 CDS YP_062530.1 50955242 2940116 complement(1706791..1708578) 1 NC_006087.1 identified by sequence similarity; dipeptide porter 1708578 oppA 2940116 oppA Leifsonia xyli subsp. xyli str. CTCB07 dipeptide porter YP_062530.1 1706791 R 281090 CDS YP_062531.1 50955243 2939953 1708861..1709655 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1709655 2939953 Lxx16410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062531.1 1708861 D 281090 CDS YP_062532.1 50955244 2940289 1714650..1715225 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 1715225 2940289 Lxx16460 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_062532.1 1714650 D 281090 CDS YP_062533.1 50955245 2939628 1715305..1716099 1 NC_006087.1 identified by sequence similarity; oxidoreductase 1716099 fabG5 2939628 fabG5 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_062533.1 1715305 D 281090 CDS YP_062534.1 50955246 2938583 1716261..1716518 1 NC_006087.1 hypothetical protein 1716518 2938583 Lxx16480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062534.1 1716261 D 281090 CDS YP_062535.1 50955247 2938515 1717410..1718705 1 NC_006087.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1718705 nadA 2938515 nadA Leifsonia xyli subsp. xyli str. CTCB07 quinolinate synthetase YP_062535.1 1717410 D 281090 CDS YP_062536.1 50955248 2938416 1720204..1721064 1 NC_006087.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 1721064 nadC 2938416 nadC Leifsonia xyli subsp. xyli str. CTCB07 nicotinate-nucleotide pyrophosphorylase YP_062536.1 1720204 D 281090 CDS YP_062537.1 50955249 2940085 1721061..1722206 1 NC_006087.1 identified by sequence similarity; cysteine desulfurase 1722206 iscS 2940085 iscS Leifsonia xyli subsp. xyli str. CTCB07 cysteine desulfurase YP_062537.1 1721061 D 281090 CDS YP_062538.1 50955250 2939997 1723865..1724953 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1724953 2939997 Lxx16560 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062538.1 1723865 D 281090 CDS YP_062539.1 50955251 2938299 1725095..1725556 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx4 1725556 tnp 2938299 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx4 YP_062539.1 1725095 D 281090 CDS YP_062540.1 50955252 2938441 complement(1726488..1726676) 1 NC_006087.1 hypothetical protein 1726676 2938441 Lxx16580 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062540.1 1726488 R 281090 CDS YP_062541.1 50955253 2938348 complement(1726737..1727423) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1727423 2938348 Lxx16590 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062541.1 1726737 R 281090 CDS YP_062542.1 50955254 2939644 complement(1727694..1728014) 1 NC_006087.1 hypothetical protein 1728014 2939644 Lxx16600 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062542.1 1727694 R 281090 CDS YP_062543.1 50955255 2939151 complement(1728283..1729353) 1 NC_006087.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1729353 2939151 Lxx16610 Leifsonia xyli subsp. xyli str. CTCB07 GTP-dependent nucleic acid-binding protein EngD YP_062543.1 1728283 R 281090 CDS YP_062544.1 50955256 2939612 1730151..1730729 1 NC_006087.1 identified by sequence similarity; DNA polymerase III subunit epsilon 1730729 2939612 Lxx16640 Leifsonia xyli subsp. xyli str. CTCB07 DNA polymerase III subunit epsilon YP_062544.1 1730151 D 281090 CDS YP_062545.1 50955257 2939357 1730824..1732236 1 NC_006087.1 identified by sequence similarity; sugar transporter 1732236 2939357 Lxx16650 Leifsonia xyli subsp. xyli str. CTCB07 sugar transporter YP_062545.1 1730824 D 281090 CDS YP_062546.1 50955258 2940439 1732286..1733707 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1733707 2940439 Lxx16660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062546.1 1732286 D 281090 CDS YP_062547.1 50955259 2939916 complement(1733862..1734863) 1 NC_006087.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 1734863 glpX 2939916 glpX Leifsonia xyli subsp. xyli str. CTCB07 fructose 1,6-bisphosphatase II YP_062547.1 1733862 R 281090 CDS YP_062548.1 50955260 2940258 1735067..1736092 1 NC_006087.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 1736092 fba 2940258 fba Leifsonia xyli subsp. xyli str. CTCB07 fructose-bisphosphate aldolase YP_062548.1 1735067 D 281090 CDS YP_062549.1 50955261 2940123 1736123..1736758 1 NC_006087.1 hypothetical protein 1736758 2940123 Lxx16690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062549.1 1736123 D 281090 CDS YP_062550.1 50955262 2938443 complement(1736846..1737748) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1737748 2938443 Lxx16700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062550.1 1736846 R 281090 CDS YP_062551.1 50955263 2939793 complement(1741972..1742985) 1 NC_006087.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1742985 ispH 2939793 ispH Leifsonia xyli subsp. xyli str. CTCB07 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_062551.1 1741972 R 281090 CDS YP_062552.1 50955264 2940015 1743008..1744387 1 NC_006087.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1744387 xseA 2940015 xseA Leifsonia xyli subsp. xyli str. CTCB07 exodeoxyribonuclease VII large subunit YP_062552.1 1743008 D 281090 CDS YP_062553.1 50955265 2939378 1744389..1744667 1 NC_006087.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1744667 xseB 2939378 xseB Leifsonia xyli subsp. xyli str. CTCB07 exodeoxyribonuclease VII small subunit YP_062553.1 1744389 D 281090 CDS YP_062554.1 50955266 2938428 1745317..1745988 1 NC_006087.1 identified by sequence similarity; carbonic anhydrase 1745988 cynT 2938428 cynT Leifsonia xyli subsp. xyli str. CTCB07 carbonic anhydrase YP_062554.1 1745317 D 281090 CDS YP_062555.1 50955267 2938961 1746025..1747431 1 NC_006087.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1747431 fumC 2938961 fumC Leifsonia xyli subsp. xyli str. CTCB07 fumarate hydratase YP_062555.1 1746025 D 281090 CDS YP_062556.1 50955268 2939687 complement(1747708..1747992) 1 NC_006087.1 hypothetical protein 1747992 2939687 Lxx16820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062556.1 1747708 R 281090 CDS YP_062557.1 50955269 2939408 complement(1748115..1749464) 1 NC_006087.1 identified by sequence similarity; PhoH-like protein 1749464 phoH 2939408 phoH Leifsonia xyli subsp. xyli str. CTCB07 PhoH-like protein YP_062557.1 1748115 R 281090 CDS YP_062558.1 50955270 2939854 complement(1749676..1750710) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1750710 2939854 Lxx16840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062558.1 1749676 R 281090 CDS YP_062559.1 50955271 2939539 complement(1750867..1751661) 1 NC_006087.1 identified by sequence similarity; undecaprenyl pyrophosphate synthetase 1751661 uppS 2939539 uppS Leifsonia xyli subsp. xyli str. CTCB07 undecaprenyl pyrophosphate synthetase YP_062559.1 1750867 R 281090 CDS YP_062560.1 50955272 2939849 1751756..1752559 1 NC_006087.1 identified by sequence similarity; hemolysin III family protein 1752559 2939849 Lxx16860 Leifsonia xyli subsp. xyli str. CTCB07 hemolysin III family protein YP_062560.1 1751756 D 281090 CDS YP_062561.1 50955273 2940459 complement(1752574..1752837) 1 NC_006087.1 hypothetical protein 1752837 2940459 Lxx16880 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062561.1 1752574 R 281090 CDS YP_062562.1 50955274 2939737 1753584..1754075 1 NC_006087.1 identified by sequence similarity; transcription elongation factor 1754075 greA 2939737 greA Leifsonia xyli subsp. xyli str. CTCB07 transcription elongation factor YP_062562.1 1753584 D 281090 CDS YP_062563.1 50955275 2940446 complement(1754148..1755398) 1 NC_006087.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1755398 ilvA 2940446 ilvA Leifsonia xyli subsp. xyli str. CTCB07 threonine dehydratase YP_062563.1 1754148 R 281090 CDS YP_062564.1 50955276 2939842 complement(1755452..1756693) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1756693 2939842 Lxx16910 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062564.1 1755452 R 281090 CDS YP_062565.1 50955277 2938279 1758362..1758454 1 NC_006087.1 hypothetical protein 1758454 2938279 Lxx16940 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062565.1 1758362 D 281090 CDS YP_062566.1 50955278 2939619 1760053..1761393 1 NC_006087.1 identified by sequence similarity; cell division protein 1761393 ftsW 2939619 ftsW Leifsonia xyli subsp. xyli str. CTCB07 cell division protein YP_062566.1 1760053 D 281090 CDS YP_062567.1 50955279 2938791 1761403..1762614 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1762614 2938791 Lxx16960 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062567.1 1761403 D 281090 CDS YP_062568.1 50955280 2939512 complement(1763554..1764120) 1 NC_006087.1 identified by sequence similarity; LemA-like protein 1764120 2939512 Lxx16980 Leifsonia xyli subsp. xyli str. CTCB07 LemA-like protein YP_062568.1 1763554 R 281090 CDS YP_062569.1 50955281 2938354 1765136..1766614 1 NC_006087.1 identified by sequence similarity; antifreeze glycopeptide AFGP polyprotein 1766614 2938354 Lxx16990 Leifsonia xyli subsp. xyli str. CTCB07 antifreeze glycopeptide AFGP polyprotein YP_062569.1 1765136 D 281090 CDS YP_062570.1 50955282 2939989 complement(1766618..1766989) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1766989 2939989 Lxx17000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062570.1 1766618 R 281090 CDS YP_062571.1 50955283 2939080 1767184..1767291 1 NC_006087.1 hypothetical protein 1767291 2939080 Lxx17010 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062571.1 1767184 D 281090 CDS YP_062572.1 50955284 2939713 complement(1769184..1770125) 1 NC_006087.1 identified by sequence similarity; ribokinase 1770125 rbsK 2939713 rbsK Leifsonia xyli subsp. xyli str. CTCB07 ribokinase YP_062572.1 1769184 R 281090 CDS YP_062573.1 50955285 2940605 complement(1770160..1771200) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1771200 2940605 Lxx17060 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062573.1 1770160 R 281090 CDS YP_062574.1 50955286 2938270 complement(1771401..1771682) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1771682 2938270 Lxx17070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062574.1 1771401 R 281090 CDS YP_062575.1 50955287 2939593 complement(1771997..1772386) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1772386 2939593 Lxx17080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062575.1 1771997 R 281090 CDS YP_062576.1 50955288 2938917 complement(1772586..1773881) 1 NC_006087.1 identified by sequence similarity; sugar ABC transporter sugar-binding protein 1773881 2938917 Lxx17090 Leifsonia xyli subsp. xyli str. CTCB07 sugar ABC transporter sugar-binding protein YP_062576.1 1772586 R 281090 CDS YP_062577.1 50955289 2938573 complement(1773916..1774818) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1774818 2938573 Lxx17100 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062577.1 1773916 R 281090 CDS YP_062578.1 50955290 2938827 complement(1775759..1776793) 1 NC_006087.1 identified by sequence similarity; LacI family transcription regulator 1776793 2938827 Lxx17130 Leifsonia xyli subsp. xyli str. CTCB07 LacI family transcription regulator YP_062578.1 1775759 R 281090 CDS YP_062579.1 50955291 2940565 1776992..1777573 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1777573 2940565 Lxx17140 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062579.1 1776992 D 281090 CDS YP_062580.1 50955292 2938810 complement(1777729..1779150) 1 NC_006087.1 identified by sequence similarity; NADH dehydrogenase, type 2 1779150 2938810 Lxx17150 Leifsonia xyli subsp. xyli str. CTCB07 NADH dehydrogenase, type 2 YP_062580.1 1777729 R 281090 CDS YP_062581.1 50955293 2939237 complement(1779190..1780482) 1 NC_006087.1 identified by sequence similarity; serine protease 1780482 2939237 Lxx17160 Leifsonia xyli subsp. xyli str. CTCB07 serine protease YP_062581.1 1779190 R 281090 CDS YP_062582.1 50955294 2938426 complement(1780461..1780973) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1780973 2938426 Lxx17170 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062582.1 1780461 R 281090 CDS YP_062583.1 50955295 2939483 complement(1780970..1781503) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1781503 2939483 Lxx17180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062583.1 1780970 R 281090 CDS YP_062585.1 50955297 2939944 complement(1781818..1783098) 1 NC_006087.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1783098 eno 2939944 eno Leifsonia xyli subsp. xyli str. CTCB07 phosphopyruvate hydratase YP_062585.1 1781818 R 281090 CDS YP_062586.1 50955298 2940073 1783163..1783846 1 NC_006087.1 identified by sequence similarity; transposase 1783846 2940073 Lxx17210 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_062586.1 1783163 D 281090 CDS YP_062587.1 50955299 2938331 complement(1783906..1785201) 1 NC_006087.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1785201 hisS 2938331 hisS Leifsonia xyli subsp. xyli str. CTCB07 histidyl-tRNA synthetase YP_062587.1 1783906 R 281090 CDS YP_062588.1 50955300 2940028 complement(1785292..1786095) 1 NC_006087.1 identified by sequence similarity; iron-vibriobactin/enterobactin uptake porter 1786095 2940028 Lxx17230 Leifsonia xyli subsp. xyli str. CTCB07 iron-vibriobactin/enterobactin uptake porter YP_062588.1 1785292 R 281090 CDS YP_062589.1 50955301 2939711 complement(1786100..1787944) 1 NC_006087.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 1787944 fepD 2939711 fepD Leifsonia xyli subsp. xyli str. CTCB07 iron-hydroxamate transporter permease subunit YP_062589.1 1786100 R 281090 CDS YP_062590.1 50955302 2939476 complement(1788105..1789163) 1 NC_006087.1 identified by sequence similarity; iron ABC transporter substrate-binding protein 1789163 2939476 Lxx17250 Leifsonia xyli subsp. xyli str. CTCB07 iron ABC transporter substrate-binding protein YP_062590.1 1788105 R 281090 CDS YP_062591.1 50955303 2940001 complement(1789232..1789879) 1 NC_006087.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1789879 2940001 Lxx17260 Leifsonia xyli subsp. xyli str. CTCB07 nucleoside triphosphate pyrophosphohydrolase YP_062591.1 1789232 R 281090 CDS YP_062592.1 50955304 2938290 complement(1791299..1794913) 1 NC_006087.1 identified by sequence similarity; transcription-repair coupling factor 1794913 mfd 2938290 mfd Leifsonia xyli subsp. xyli str. CTCB07 transcription-repair coupling factor YP_062592.1 1791299 R 281090 CDS YP_062593.1 50955305 2940466 complement(1796125..1796706) 1 NC_006087.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1796706 pth 2940466 pth Leifsonia xyli subsp. xyli str. CTCB07 peptidyl-tRNA hydrolase YP_062593.1 1796125 R 281090 CDS YP_062594.1 50955306 2939111 complement(1796715..1797317) 1 NC_006087.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1797317 rplY 2939111 rplY Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L25 YP_062594.1 1796715 R 281090 CDS YP_062595.1 50955307 2939229 complement(1797440..1798345) 1 NC_006087.1 identified by sequence similarity; starvation-sensing protein A 1798345 2939229 Lxx17310 Leifsonia xyli subsp. xyli str. CTCB07 starvation-sensing protein A YP_062595.1 1797440 R 281090 CDS YP_062596.1 50955308 2939451 complement(1799633..1800442) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1800442 2939451 Lxx17340 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062596.1 1799633 R 281090 CDS YP_062597.1 50955309 2939518 complement(1800493..1801590) 1 NC_006087.1 identified by sequence similarity; lipopolysaccharide biosynthesis protein 1801590 bplA 2939518 bplA Leifsonia xyli subsp. xyli str. CTCB07 lipopolysaccharide biosynthesis protein YP_062597.1 1800493 R 281090 CDS YP_062598.1 50955310 2940323 1801672..1803216 1 NC_006087.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 1803216 uxaC 2940323 uxaC Leifsonia xyli subsp. xyli str. CTCB07 glucuronate isomerase YP_062598.1 1801672 D 281090 CDS YP_062599.1 50955311 2939856 1803958..1804359 1 NC_006087.1 hypothetical protein 1804359 2939856 Lxx17370 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062599.1 1803958 D 281090 CDS YP_062600.1 50955312 2938636 1804438..1805898 1 NC_006087.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1805898 gnd 2938636 gnd Leifsonia xyli subsp. xyli str. CTCB07 6-phosphogluconate dehydrogenase YP_062600.1 1804438 D 281090 CDS YP_062601.1 50955313 2939795 1806004..1806351 1 NC_006087.1 hypothetical protein 1806351 2939795 Lxx17390 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062601.1 1806004 D 281090 CDS YP_062602.1 50955314 2940038 complement(1806370..1807002) 1 NC_006087.1 identified by sequence similarity; acetyltransferase 1807002 2940038 Lxx17400 Leifsonia xyli subsp. xyli str. CTCB07 acetyltransferase YP_062602.1 1806370 R 281090 CDS YP_062603.1 50955315 2939140 complement(1807008..1808270) 1 NC_006087.1 identified by sequence similarity; sugar ABC transporter sugar-binding protein 1808270 malE 2939140 malE Leifsonia xyli subsp. xyli str. CTCB07 sugar ABC transporter sugar-binding protein YP_062603.1 1807008 R 281090 CDS YP_062604.1 50955316 2939624 complement(1808413..1809390) 1 NC_006087.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1809390 psrA 2939624 psrA Leifsonia xyli subsp. xyli str. CTCB07 ribose-phosphate pyrophosphokinase YP_062604.1 1808413 R 281090 CDS YP_062605.1 50955317 2940593 complement(1809391..1810866) 1 NC_006087.1 identified by sequence similarity; UDP-N-acetylglucosamine pyrophosphorylase 1810866 glmU 2940593 glmU Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylglucosamine pyrophosphorylase YP_062605.1 1809391 R 281090 CDS YP_062606.1 50955318 2940009 1811031..1811549 1 NC_006087.1 identified by sequence similarity; MarR family transcriptional regulator 1811549 marR 2940009 marR Leifsonia xyli subsp. xyli str. CTCB07 MarR family transcriptional regulator YP_062606.1 1811031 D 281090 CDS YP_062607.1 50955319 2939555 1811632..1814133 1 NC_006087.1 identified by sequence similarity; teichoic acid synthase 1814133 tagF 2939555 tagF Leifsonia xyli subsp. xyli str. CTCB07 teichoic acid synthase YP_062607.1 1811632 D 281090 CDS YP_062608.1 50955320 2940056 1814231..1816051 1 NC_006087.1 identified by sequence similarity; oleandomycin resistance ATPase 1816051 2940056 Lxx17470 Leifsonia xyli subsp. xyli str. CTCB07 oleandomycin resistance ATPase YP_062608.1 1814231 D 281090 CDS YP_062609.1 50955321 2940425 complement(1816343..1817263) 1 NC_006087.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1817263 ispE 2940425 ispE Leifsonia xyli subsp. xyli str. CTCB07 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_062609.1 1816343 R 281090 CDS YP_062610.1 50955322 2939587 complement(1817349..1818191) 1 NC_006087.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1818191 ksgA 2939587 ksgA Leifsonia xyli subsp. xyli str. CTCB07 dimethyladenosine transferase YP_062610.1 1817349 R 281090 CDS YP_062611.1 50955323 2940107 complement(1818188..1819129) 1 NC_006087.1 identified by sequence similarity; sec-independent protein TadD 1819129 2940107 Lxx17510 Leifsonia xyli subsp. xyli str. CTCB07 sec-independent protein TadD YP_062611.1 1818188 R 281090 CDS YP_062612.1 50955324 2938909 complement(1819126..1820715) 1 NC_006087.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1820715 metG 2938909 metG Leifsonia xyli subsp. xyli str. CTCB07 methionyl-tRNA synthetase YP_062612.1 1819126 R 281090 CDS YP_062613.1 50955325 2939734 complement(1820920..1821846) 1 NC_006087.1 hypothetical protein 1821846 2939734 Lxx17530 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062613.1 1820920 R 281090 CDS YP_062614.1 50955326 2940356 complement(1825457..1826275) 1 NC_006087.1 identified by sequence similarity; tetrapyrrole methylase 1826275 2940356 Lxx17580 Leifsonia xyli subsp. xyli str. CTCB07 tetrapyrrole methylase YP_062614.1 1825457 R 281090 CDS YP_062615.1 50955327 2938300 1826302..1827936 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1827936 2938300 Lxx17570 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062615.1 1826302 D 281090 CDS YP_062616.1 50955328 2939516 complement(1828121..1829089) 1 NC_006087.1 identified by sequence similarity; sugar ABC transporter sugar-binding protein 1829089 2939516 Lxx17590 Leifsonia xyli subsp. xyli str. CTCB07 sugar ABC transporter sugar-binding protein YP_062616.1 1828121 R 281090 CDS YP_062617.1 50955329 2938455 complement(1829318..1830040) 1 NC_006087.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 1830040 murQ 2938455 murQ Leifsonia xyli subsp. xyli str. CTCB07 N-acetylmuramic acid-6-phosphate etherase YP_062617.1 1829318 R 281090 CDS YP_062618.1 50955330 2939425 1831110..1831598 1 NC_006087.1 identified by sequence similarity; glutathione peroxidase 1831598 gpoA 2939425 gpoA Leifsonia xyli subsp. xyli str. CTCB07 glutathione peroxidase YP_062618.1 1831110 D 281090 CDS YP_062619.1 50955331 2939216 1832039..1832929 1 NC_006087.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1832929 pabC 2939216 pabC Leifsonia xyli subsp. xyli str. CTCB07 4-amino-4-deoxychorismate lyase YP_062619.1 1832039 D 281090 CDS YP_062620.1 50955332 2939926 1833063..1833398 1 NC_006087.1 hypothetical protein 1833398 2939926 Lxx17650 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062620.1 1833063 D 281090 CDS YP_062621.1 50955333 2938306 complement(1834396..1835688) 1 NC_006087.1 identified by sequence similarity; dibenzothiophene desulfurization enzyme A 1835688 soxA 2938306 soxA Leifsonia xyli subsp. xyli str. CTCB07 dibenzothiophene desulfurization enzyme A YP_062621.1 1834396 R 281090 CDS YP_062622.1 50955334 2939822 complement(1835765..1836748) 1 NC_006087.1 identified by sequence similarity; cystathionine beta-synthase 1836748 cysM2 2939822 cysM2 Leifsonia xyli subsp. xyli str. CTCB07 cystathionine beta-synthase YP_062622.1 1835765 R 281090 CDS YP_062623.1 50955335 2940004 complement(1836814..1837761) 1 NC_006087.1 hypothetical protein 1837761 2940004 Lxx17710 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062623.1 1836814 R 281090 CDS YP_062624.1 50955336 2939074 complement(1838400..1838750) 1 NC_006087.1 hypothetical protein 1838750 2939074 Lxx17730 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062624.1 1838400 R 281090 CDS YP_062625.1 50955337 2940159 complement(1838868..1839368) 1 NC_006087.1 hypothetical protein 1839368 2940159 Lxx17740 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062625.1 1838868 R 281090 CDS YP_062626.1 50955338 2938581 complement(1839450..1840253) 1 NC_006087.1 hypothetical protein 1840253 2938581 Lxx17750 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062626.1 1839450 R 281090 CDS YP_062627.1 50955339 2940618 complement(1841226..1842215) 1 NC_006087.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1842215 nrdF 2940618 nrdF Leifsonia xyli subsp. xyli str. CTCB07 ribonucleotide-diphosphate reductase subunit beta YP_062627.1 1841226 R 281090 CDS YP_062628.1 50955340 2939069 complement(1842340..1845030) 1 NC_006087.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1845030 nrdA 2939069 nrdA Leifsonia xyli subsp. xyli str. CTCB07 ribonucleotide-diphosphate reductase subunit alpha YP_062628.1 1842340 R 281090 CDS YP_062629.1 50955341 2939533 1845103..1846314 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1846314 2939533 Lxx17780 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062629.1 1845103 D 281090 CDS YP_062630.1 50955342 2939724 1846910..1847821 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1847821 2939724 Lxx17800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062630.1 1846910 D 281090 CDS YP_062631.1 50955343 2939105 1848229..1849452 1 NC_006087.1 identified by sequence similarity; acyl-CoA dehydrogenase 1849452 2939105 Lxx17810 Leifsonia xyli subsp. xyli str. CTCB07 acyl-CoA dehydrogenase YP_062631.1 1848229 D 281090 CDS YP_062632.1 50955344 2939582 1849458..1850576 1 NC_006087.1 identified by sequence similarity; dipeptidase 1850576 pepQ 2939582 pepQ Leifsonia xyli subsp. xyli str. CTCB07 dipeptidase YP_062632.1 1849458 D 281090 CDS YP_062633.1 50955345 2938903 complement(1850868..1851302) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1851302 2938903 Lxx17840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062633.1 1850868 R 281090 CDS YP_062634.1 50955346 2938708 complement(1851622..1852119) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1852119 2938708 Lxx17860 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062634.1 1851622 R 281090 CDS YP_062635.1 50955347 2939733 complement(1852497..1853060) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1853060 2939733 Lxx17870 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062635.1 1852497 R 281090 CDS YP_062636.1 50955348 2939881 complement(1853631..1854332) 1 NC_006087.1 identified by sequence similarity; DtxR family iron dependent repressor 1854332 2939881 Lxx17880 Leifsonia xyli subsp. xyli str. CTCB07 DtxR family iron dependent repressor YP_062636.1 1853631 R 281090 CDS YP_062637.1 50955349 2940084 1854439..1855554 1 NC_006087.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 1855554 serC 2940084 serC Leifsonia xyli subsp. xyli str. CTCB07 phosphoserine aminotransferase YP_062637.1 1854439 D 281090 CDS YP_062638.1 50955350 2939450 1855702..1855800 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1855800 2939450 Lxx17900 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062638.1 1855702 D 281090 CDS YP_062639.1 50955351 2939504 complement(1855822..1856433) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1856433 2939504 Lxx17910 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062639.1 1855822 R 281090 CDS YP_062640.1 50955352 2938391 complement(1856417..1856797) 1 NC_006087.1 identified by sequence similarity; cold shock protein 1856797 cspB 2938391 cspB Leifsonia xyli subsp. xyli str. CTCB07 cold shock protein YP_062640.1 1856417 R 281090 CDS YP_062641.1 50955353 2939890 1856854..1857144 1 NC_006087.1 hypothetical protein 1857144 2939890 Lxx17930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062641.1 1856854 D 281090 CDS YP_062642.1 50955354 2940539 1857167..1859011 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1859011 2940539 Lxx17940 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062642.1 1857167 D 281090 CDS YP_062643.1 50955355 2940587 1859018..1860658 1 NC_006087.1 identified by sequence similarity; DNA repair helicase 1860658 xpbC 2940587 xpbC Leifsonia xyli subsp. xyli str. CTCB07 DNA repair helicase YP_062643.1 1859018 D 281090 CDS YP_062644.1 50955356 2939955 complement(1860665..1861411) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1861411 ribG 2939955 ribG Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062644.1 1860665 R 281090 CDS YP_062645.1 50955357 2939673 complement(1861428..1862324) 1 NC_006087.1 identified by sequence similarity; dihydropteroate synthase 1862324 folP 2939673 folP Leifsonia xyli subsp. xyli str. CTCB07 dihydropteroate synthase YP_062645.1 1861428 R 281090 CDS YP_062646.1 50955358 2938569 1862665..1863366 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 1863366 phoP 2938569 phoP Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062646.1 1862665 D 281090 CDS YP_062647.1 50955359 2938417 1863406..1865121 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 1865121 phoR 2938417 phoR Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062647.1 1863406 D 281090 CDS YP_062648.1 50955360 2939878 1865876..1866109 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1866109 2939878 Lxx18000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062648.1 1865876 D 281090 CDS YP_062649.1 50955361 2938571 complement(1866921..1868540) 1 NC_006087.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1868540 groEL 2938571 groEL Leifsonia xyli subsp. xyli str. CTCB07 molecular chaperone GroEL YP_062649.1 1866921 R 281090 CDS YP_062650.1 50955362 2939276 complement(1868814..1869032) 1 NC_006087.1 identified by sequence similarity; cold-shock protein 1869032 csp 2939276 csp Leifsonia xyli subsp. xyli str. CTCB07 cold-shock protein YP_062650.1 1868814 R 281090 CDS YP_062651.1 50955363 2940183 complement(1869204..1869491) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1869491 2940183 Lxx18030 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062651.1 1869204 R 281090 CDS YP_062652.1 50955364 2940042 complement(1869775..1870074) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1870074 2940042 Lxx18040 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062652.1 1869775 R 281090 CDS YP_062653.1 50955365 2940294 1870248..1870667 1 NC_006087.1 identified by sequence similarity; oxidoreductase 1870667 2940294 Lxx18050 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_062653.1 1870248 D 281090 CDS YP_062654.1 50955366 2938982 1870664..1871215 1 NC_006087.1 identified by sequence similarity; nitroreductase 1871215 2938982 Lxx18060 Leifsonia xyli subsp. xyli str. CTCB07 nitroreductase YP_062654.1 1870664 D 281090 CDS YP_062655.1 50955367 2938923 complement(1871212..1872747) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1872747 2938923 Lxx18080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062655.1 1871212 R 281090 CDS YP_062656.1 50955368 2938385 1872764..1873516 1 NC_006087.1 identified by sequence similarity; signal peptidase I 1873516 lepB 2938385 lepB Leifsonia xyli subsp. xyli str. CTCB07 signal peptidase I YP_062656.1 1872764 D 281090 CDS YP_062657.1 50955369 2938288 complement(1873633..1874418) 1 NC_006087.1 identified by sequence similarity; siderophore-interacting protein 1874418 2938288 Lxx18100 Leifsonia xyli subsp. xyli str. CTCB07 siderophore-interacting protein YP_062657.1 1873633 R 281090 CDS YP_062658.1 50955370 2939659 1874646..1874882 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1874882 2939659 Lxx18110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062658.1 1874646 D 281090 CDS YP_062659.1 50955371 2939594 complement(1874959..1875618) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 1875618 2939594 Lxx18120 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062659.1 1874959 R 281090 CDS YP_062660.1 50955372 2938356 complement(1875615..1877183) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 1877183 2938356 Lxx18130 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062660.1 1875615 R 281090 CDS YP_062661.1 50955373 2939748 1877365..1878870 1 NC_006087.1 identified by sequence similarity; Mg++/citrate complex transporter 1878870 citM 2939748 citM Leifsonia xyli subsp. xyli str. CTCB07 Mg++/citrate complex transporter YP_062661.1 1877365 D 281090 CDS YP_062662.1 50955374 2939889 1878880..1879236 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1879236 2939889 Lxx18150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062662.1 1878880 D 281090 CDS YP_062663.1 50955375 2938762 complement(1879391..1880281) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1880281 2938762 Lxx18180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062663.1 1879391 R 281090 CDS YP_062664.1 50955376 2940173 1880558..1881652 1 NC_006087.1 identified by sequence similarity; glycerol-phosphate porter 1881652 palK 2940173 palK Leifsonia xyli subsp. xyli str. CTCB07 glycerol-phosphate porter YP_062664.1 1880558 D 281090 CDS YP_062665.1 50955377 2939721 1881706..1883034 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1883034 2939721 Lxx18190 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062665.1 1881706 D 281090 CDS YP_062666.1 50955378 2939832 complement(1883047..1883622) 1 NC_006087.1 identified by sequence similarity; secreted protein 1883622 2939832 Lxx18200 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_062666.1 1883047 R 281090 CDS YP_062667.1 50955379 2938529 1883911..1884843 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 1884843 2938529 Lxx18210 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062667.1 1883911 D 281090 CDS YP_062668.1 50955380 2939660 1884840..1885463 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 1885463 2939660 Lxx18220 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062668.1 1884840 D 281090 CDS YP_062669.1 50955381 2940049 complement(1885503..1886513) 1 NC_006087.1 identified by sequence similarity; tRNA/rRNA methyltransferase protein 1886513 2940049 Lxx18230 Leifsonia xyli subsp. xyli str. CTCB07 tRNA/rRNA methyltransferase protein YP_062669.1 1885503 R 281090 CDS YP_062670.1 50955382 2938689 complement(1886510..1887943) 1 NC_006087.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1887943 cysS 2938689 cysS Leifsonia xyli subsp. xyli str. CTCB07 cysteinyl-tRNA synthetase YP_062670.1 1886510 R 281090 CDS YP_062671.1 50955383 2939630 complement(1887954..1889114) 1 NC_006087.1 identified by sequence similarity; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1889114 ispF 2939630 ispF Leifsonia xyli subsp. xyli str. CTCB07 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_062671.1 1887954 R 281090 CDS YP_062672.1 50955384 2938951 complement(1889205..1889687) 1 NC_006087.1 identified by sequence similarity; transcriptional regulator, CarD-like regulator 1889687 2938951 Lxx18260 Leifsonia xyli subsp. xyli str. CTCB07 transcriptional regulator, CarD-like regulator YP_062672.1 1889205 R 281090 CDS YP_062673.1 50955385 2940233 1889864..1890364 1 NC_006087.1 hypothetical protein 1890364 2940233 Lxx18270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062673.1 1889864 D 281090 CDS YP_062674.1 50955386 2939718 complement(1890394..1891077) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 1891077 regX3 2939718 regX3 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062674.1 1890394 R 281090 CDS YP_062675.1 50955387 2938386 complement(1891074..1892225) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 1892225 2938386 Lxx18290 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062675.1 1891074 R 281090 CDS YP_062676.1 50955388 2940415 1892351..1893079 1 NC_006087.1 identified by sequence similarity; phosphate transport system regulator 1893079 phoU 2940415 phoU Leifsonia xyli subsp. xyli str. CTCB07 phosphate transport system regulator YP_062676.1 1892351 D 281090 CDS YP_062677.1 50955389 2938742 complement(1893190..1893981) 1 NC_006087.1 hypothetical protein 1893981 2938742 Lxx18310 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062677.1 1893190 R 281090 CDS YP_062678.1 50955390 2938411 complement(1894359..1895108) 1 NC_006087.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1895108 gpmA 2938411 gpmA Leifsonia xyli subsp. xyli str. CTCB07 phosphoglyceromutase YP_062678.1 1894359 R 281090 CDS YP_062679.1 50955391 2940522 1895126..1895944 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1895944 2940522 Lxx18330 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062679.1 1895126 D 281090 CDS YP_062680.1 50955392 2938672 complement(1895975..1897087) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1897087 2938672 Lxx18340 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062680.1 1895975 R 281090 CDS YP_062681.1 50955393 2940143 complement(1897089..1897685) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1897685 2940143 Lxx18350 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062681.1 1897089 R 281090 CDS YP_062682.1 50955394 2939851 complement(1897705..1897815) 1 NC_006087.1 hypothetical protein 1897815 2939851 Lxx18360 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062682.1 1897705 R 281090 CDS YP_062683.1 50955395 2939534 1898247..1898951 1 NC_006087.1 identified by sequence similarity; GlnR family transcriptional regulator 1898951 glnR 2939534 glnR Leifsonia xyli subsp. xyli str. CTCB07 GlnR family transcriptional regulator YP_062683.1 1898247 D 281090 CDS YP_062684.1 50955396 2940199 1902283..1903377 1 NC_006087.1 identified by sequence similarity; phosphate porter 1903377 pstS 2940199 pstS Leifsonia xyli subsp. xyli str. CTCB07 phosphate porter YP_062684.1 1902283 D 281090 CDS YP_062685.1 50955397 2938478 1903474..1904421 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1904421 pstC 2938478 pstC Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062685.1 1903474 D 281090 CDS YP_062686.1 50955398 2939877 1904421..1905509 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1905509 pstA 2939877 pstA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062686.1 1904421 D 281090 CDS YP_062687.1 50955399 2939500 1905551..1906330 1 NC_006087.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1906330 pstB 2939500 pstB Leifsonia xyli subsp. xyli str. CTCB07 phosphate transporter ATP-binding protein YP_062687.1 1905551 D 281090 CDS YP_062688.1 50955400 2940592 complement(1906372..1907091) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1907091 2940592 Lxx18460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062688.1 1906372 R 281090 CDS YP_062689.1 50955401 2939857 complement(1907088..1907666) 1 NC_006087.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. bovis this protein has been shown to be involved in expression of antigenic proteins; RNA polymerase sigma factor SigK 1907666 2939857 Lxx18470 Leifsonia xyli subsp. xyli str. CTCB07 RNA polymerase sigma factor SigK YP_062689.1 1907088 R 281090 CDS YP_062690.1 50955402 2940047 complement(1907827..1908456) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1908456 2940047 Lxx18480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062690.1 1907827 R 281090 CDS YP_062691.1 50955403 2938802 complement(1908671..1909330) 1 NC_006087.1 identified by sequence similarity; secreted protein 1909330 2938802 Lxx18490 Leifsonia xyli subsp. xyli str. CTCB07 secreted protein YP_062691.1 1908671 R 281090 CDS YP_062692.1 50955404 2939513 complement(1910573..1911781) 1 NC_006087.1 identified by sequence similarity; chloride channel protein 1911781 2939513 Lxx18520 Leifsonia xyli subsp. xyli str. CTCB07 chloride channel protein YP_062692.1 1910573 R 281090 CDS YP_062693.1 50955405 2939286 complement(1911871..1912086) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1912086 2939286 Lxx18530 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062693.1 1911871 R 281090 CDS YP_062694.1 50955406 2938248 1912531..1913661 1 NC_006087.1 identified by sequence similarity; calcium/proton antiporter 1913661 chaA 2938248 chaA Leifsonia xyli subsp. xyli str. CTCB07 calcium/proton antiporter YP_062694.1 1912531 D 281090 CDS YP_062695.1 50955407 2940369 complement(1913745..1914590) 1 NC_006087.1 identified by sequence similarity; DeoR family transcriptional regulator 1914590 2940369 Lxx18550 Leifsonia xyli subsp. xyli str. CTCB07 DeoR family transcriptional regulator YP_062695.1 1913745 R 281090 CDS YP_062696.1 50955408 2940287 complement(1917118..1917870) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1917870 2940287 Lxx18600 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062696.1 1917118 R 281090 CDS YP_062697.1 50955409 2940571 1917907..1918422 1 NC_006087.1 identified by sequence similarity; siderophore binding protein 1918422 2940571 Lxx18610 Leifsonia xyli subsp. xyli str. CTCB07 siderophore binding protein YP_062697.1 1917907 D 281090 CDS YP_062698.1 50955410 2938906 complement(1918419..1918856) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1918856 2938906 Lxx18620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062698.1 1918419 R 281090 CDS YP_062699.1 50955411 2938335 complement(1918901..1919782) 1 NC_006087.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1919782 folD 2938335 folD Leifsonia xyli subsp. xyli str. CTCB07 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_062699.1 1918901 R 281090 CDS YP_062700.1 50955412 2940474 complement(1919872..1921164) 1 NC_006087.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1921164 glyA 2940474 glyA Leifsonia xyli subsp. xyli str. CTCB07 serine hydroxymethyltransferase YP_062700.1 1919872 R 281090 CDS YP_062701.1 50955413 2939223 1921433..1922923 1 NC_006087.1 identified by sequence similarity; beta-N-acetylhexosaminidase 1922923 2939223 Lxx18650 Leifsonia xyli subsp. xyli str. CTCB07 beta-N-acetylhexosaminidase YP_062701.1 1921433 D 281090 CDS YP_062702.1 50955414 2940444 1923632..1924384 1 NC_006087.1 identified by sequence similarity; capsular polysaccharide biosynthesis protein 1924384 cpsC 2940444 cpsC Leifsonia xyli subsp. xyli str. CTCB07 capsular polysaccharide biosynthesis protein YP_062702.1 1923632 D 281090 CDS YP_062703.1 50955415 2938690 complement(1925088..1925474) 1 NC_006087.1 hypothetical protein 1925474 2938690 Lxx18670 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062703.1 1925088 R 281090 CDS YP_062704.1 50955416 2939559 complement(1925481..1926386) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1926386 2939559 Lxx18680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062704.1 1925481 R 281090 CDS YP_062705.1 50955417 2938752 complement(1926379..1926558) 1 NC_006087.1 hypothetical protein 1926558 2938752 Lxx18690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062705.1 1926379 R 281090 CDS YP_062706.1 50955418 2939262 complement(1926727..1927680) 1 NC_006087.1 hypothetical protein 1927680 2939262 Lxx18700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062706.1 1926727 R 281090 CDS YP_062707.1 50955419 2939597 complement(1928019..1928327) 1 NC_006087.1 hypothetical protein 1928327 2939597 Lxx18710 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062707.1 1928019 R 281090 CDS YP_062708.1 50955420 2938575 1928580..1931099 1 NC_006087.1 identified by sequence similarity; LuxR family transcriptional regulator 1931099 2938575 Lxx18720 Leifsonia xyli subsp. xyli str. CTCB07 LuxR family transcriptional regulator YP_062708.1 1928580 D 281090 CDS YP_062709.1 50955421 2938382 complement(1931096..1932331) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1932331 2938382 Lxx18730 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062709.1 1931096 R 281090 CDS YP_062710.1 50955422 2940360 1933207..1936326 1 NC_006087.1 identified by sequence similarity; RHS-like protein 1936326 2940360 Lxx18740 Leifsonia xyli subsp. xyli str. CTCB07 RHS-like protein YP_062710.1 1933207 D 281090 CDS YP_062711.1 50955423 2939422 1936567..1937181 1 NC_006087.1 identified by sequence similarity; glycin rich protein 1937181 2939422 Lxx18750 Leifsonia xyli subsp. xyli str. CTCB07 glycin rich protein YP_062711.1 1936567 D 281090 CDS YP_062712.1 50955424 2940472 complement(1937178..1938389) 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 1938389 tnp 2940472 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_062712.1 1937178 R 281090 CDS YP_062713.1 50955425 2939653 complement(1938607..1939680) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 1939680 copS 2939653 copS Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062713.1 1938607 R 281090 CDS YP_062714.1 50955426 2938734 complement(1939695..1940357) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 1940357 cutR 2938734 cutR Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062714.1 1939695 R 281090 CDS YP_062715.1 50955427 2940029 1940476..1941141 1 NC_006087.1 hypothetical protein 1941141 2940029 Lxx18790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062715.1 1940476 D 281090 CDS YP_062716.1 50955428 2939866 1941250..1941528 1 NC_006087.1 hypothetical protein 1941528 2939866 Lxx18800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062716.1 1941250 D 281090 CDS YP_062717.1 50955429 2939908 1941786..1942088 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1942088 2939908 Lxx18810 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062717.1 1941786 D 281090 CDS YP_062718.1 50955430 2938423 1942683..1943204 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1943204 2938423 Lxx18820 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062718.1 1942683 D 281090 CDS YP_062719.1 50955431 2940366 1943201..1943902 1 NC_006087.1 hypothetical protein 1943902 2940366 Lxx18830 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062719.1 1943201 D 281090 CDS YP_062720.1 50955432 2939704 complement(1944316..1944708) 1 NC_006087.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1944708 rplT 2939704 rplT Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L20 YP_062720.1 1944316 R 281090 CDS YP_062721.1 50955433 2940092 complement(1944740..1944934) 1 NC_006087.1 identified by sequence similarity; 50S ribosomal protein L35 1944934 rpmI 2940092 rpmI Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L35 YP_062721.1 1944740 R 281090 CDS YP_062722.1 50955434 2938508 complement(1944934..1945740) 1 NC_006087.1 identified by sequence similarity; translation initiation factor IF-3 1945740 infC 2938508 infC Leifsonia xyli subsp. xyli str. CTCB07 translation initiation factor IF-3 YP_062722.1 1944934 R 281090 CDS YP_062723.1 50955435 2939747 complement(1947796..1948374) 1 NC_006087.1 identified by sequence similarity; phosphinothricin acetyltransferase protein 1948374 2939747 Lxx18880 Leifsonia xyli subsp. xyli str. CTCB07 phosphinothricin acetyltransferase protein YP_062723.1 1947796 R 281090 CDS YP_062724.1 50955436 2939231 complement(1948410..1949102) 1 NC_006087.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1949102 ung 2939231 ung Leifsonia xyli subsp. xyli str. CTCB07 uracil-DNA glycosylase YP_062724.1 1948410 R 281090 CDS YP_062725.1 50955437 2938746 complement(1949108..1949635) 1 NC_006087.1 identified by sequence similarity; xanthine-guanine phosphoribosyltransferase 1949635 gpt 2938746 gpt Leifsonia xyli subsp. xyli str. CTCB07 xanthine-guanine phosphoribosyltransferase YP_062725.1 1949108 R 281090 CDS YP_062726.1 50955438 2939650 complement(1949807..1950799) 1 NC_006087.1 hypothetical protein 1950799 2939650 Lxx18910 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062726.1 1949807 R 281090 CDS YP_062727.1 50955439 2939627 complement(1950830..1951186) 1 NC_006087.1 hypothetical protein 1951186 2939627 Lxx18920 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062727.1 1950830 R 281090 CDS YP_062728.1 50955440 2939522 complement(1951252..1952574) 1 NC_006087.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 1952574 cysD 2939522 cysD Leifsonia xyli subsp. xyli str. CTCB07 O-acetylhomoserine aminocarboxypropyltransferase YP_062728.1 1951252 R 281090 CDS YP_062729.1 50955441 2939465 1952685..1953533 1 NC_006087.1 identified by sequence similarity; oxidoreductase 1953533 2939465 Lxx18940 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_062729.1 1952685 D 281090 CDS YP_062730.1 50955442 2938351 1953565..1954773 1 NC_006087.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 1954773 metX 2938351 metX Leifsonia xyli subsp. xyli str. CTCB07 homoserine O-acetyltransferase YP_062730.1 1953565 D 281090 CDS YP_062731.1 50955443 2939671 1954789..1955955 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 1955955 2939671 Lxx18960 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062731.1 1954789 D 281090 CDS YP_062732.1 50955444 2940017 1955952..1957157 1 NC_006087.1 hypothetical protein 1957157 2940017 Lxx18970 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062732.1 1955952 D 281090 CDS YP_062733.1 50955445 2939346 1957193..1957846 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 1957846 2939346 Lxx18980 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062733.1 1957193 D 281090 CDS YP_062734.1 50955446 2939712 1964172..1965362 1 NC_006087.1 identified by sequence similarity; serine/threonine kinase 1965362 2939712 Lxx19030 Leifsonia xyli subsp. xyli str. CTCB07 serine/threonine kinase YP_062734.1 1964172 D 281090 CDS YP_062735.1 50955447 2939110 1965359..1965592 1 NC_006087.1 hypothetical protein 1965592 2939110 Lxx19050 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062735.1 1965359 D 281090 CDS YP_062736.1 50955448 2939426 complement(1966181..1966501) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1966501 2939426 Lxx19070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062736.1 1966181 R 281090 CDS YP_062737.1 50955449 2938500 complement(1966549..1967901) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1967901 2938500 Lxx19080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062737.1 1966549 R 281090 CDS YP_062738.1 50955450 2940046 complement(1967925..1968740) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1968740 2940046 Lxx19090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062738.1 1967925 R 281090 CDS YP_062739.1 50955451 2938541 1968807..1969424 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1969424 2938541 Lxx19100 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062739.1 1968807 D 281090 CDS YP_062740.1 50955452 2939148 1969433..1970518 1 NC_006087.1 identified by sequence similarity; NADH-dependent flavin oxidoreductase 1970518 ubiB 2939148 ubiB Leifsonia xyli subsp. xyli str. CTCB07 NADH-dependent flavin oxidoreductase YP_062740.1 1969433 D 281090 CDS YP_062741.1 50955453 2938582 complement(1970575..1971567) 1 NC_006087.1 identified by sequence similarity; hemolysin 1971567 2938582 Lxx19120 Leifsonia xyli subsp. xyli str. CTCB07 hemolysin YP_062741.1 1970575 R 281090 CDS YP_062742.1 50955454 2939765 complement(1971605..1972924) 1 NC_006087.1 identified by sequence similarity; hemolysin 1972924 2939765 Lxx19130 Leifsonia xyli subsp. xyli str. CTCB07 hemolysin YP_062742.1 1971605 R 281090 CDS YP_062743.1 50955455 2939968 complement(1973153..1974592) 1 NC_006087.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 1974592 guaB 2939968 guaB Leifsonia xyli subsp. xyli str. CTCB07 inosine 5-monophosphate dehydrogenase YP_062743.1 1973153 R 281090 CDS YP_062744.1 50955456 2938916 1974725..1978651 1 NC_006087.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; alpha-ketoglutarate decarboxylase 1978651 kgd 2938916 kgd Leifsonia xyli subsp. xyli str. CTCB07 alpha-ketoglutarate decarboxylase YP_062744.1 1974725 D 281090 CDS YP_062745.1 50955457 2938551 complement(1979210..1979941) 1 NC_006087.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1979941 sigH 2938551 sigH Leifsonia xyli subsp. xyli str. CTCB07 RNA polymerase sigma factor RpoE YP_062745.1 1979210 R 281090 CDS YP_062746.1 50955458 2940035 1980042..1981352 1 NC_006087.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1981352 aroA 2940035 aroA Leifsonia xyli subsp. xyli str. CTCB07 3-phosphoshikimate 1-carboxyvinyltransferase YP_062746.1 1980042 D 281090 CDS YP_062747.1 50955459 2938788 1981352..1982410 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1982410 2938788 Lxx19200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062747.1 1981352 D 281090 CDS YP_062748.1 50955460 2938545 1982435..1982908 1 NC_006087.1 identified by sequence similarity; bacterioferritin comigratory-like protein 1982908 bcp 2938545 bcp Leifsonia xyli subsp. xyli str. CTCB07 bacterioferritin comigratory-like protein YP_062748.1 1982435 D 281090 CDS YP_062749.1 50955461 2938562 complement(1982918..1983685) 1 NC_006087.1 identified by sequence similarity; oligopeptide transporter 1983685 dppF 2938562 dppF Leifsonia xyli subsp. xyli str. CTCB07 oligopeptide transporter YP_062749.1 1982918 R 281090 CDS YP_062750.1 50955462 2938549 complement(1983682..1984770) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 1984770 moaD 2938549 moaD Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062750.1 1983682 R 281090 CDS YP_062751.1 50955463 2940095 complement(1985348..1986310) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 1986310 dppB 2940095 dppB Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_062751.1 1985348 R 281090 CDS YP_062752.1 50955464 2939776 complement(1987943..1988329) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1988329 2939776 Lxx19270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062752.1 1987943 R 281090 CDS YP_062753.1 50955465 2938487 complement(1988750..1989163) 1 NC_006087.1 hypothetical protein 1989163 2938487 Lxx19280 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062753.1 1988750 R 281090 CDS YP_062754.1 50955466 2940016 1989390..1989638 1 NC_006087.1 identified by sequence similarity; regulatory protein 1989638 2940016 Lxx19290 Leifsonia xyli subsp. xyli str. CTCB07 regulatory protein YP_062754.1 1989390 D 281090 CDS YP_062755.1 50955467 2938509 complement(1989694..1991187) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 1991187 2938509 Lxx19320 Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062755.1 1989694 R 281090 CDS YP_062756.1 50955468 2940478 1991195..1991959 1 NC_006087.1 identified by sequence similarity; hypothetical protein 1991959 2940478 Lxx19300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062756.1 1991195 D 281090 CDS YP_062757.1 50955469 2938369 1992037..1992909 1 NC_006087.1 identified by sequence similarity; sugar kinase 1992909 2938369 Lxx19310 Leifsonia xyli subsp. xyli str. CTCB07 sugar kinase YP_062757.1 1992037 D 281090 CDS YP_062758.1 50955470 2938511 1992906..1993784 1 NC_006087.1 identified by sequence similarity; tagatose 6-phosphate kinase 1993784 lacC 2938511 lacC Leifsonia xyli subsp. xyli str. CTCB07 tagatose 6-phosphate kinase YP_062758.1 1992906 D 281090 CDS YP_062759.1 50955471 2939753 1993800..1994681 1 NC_006087.1 identified by sequence similarity; tagatose-bisphosphate aldolase 1994681 agaY 2939753 agaY Leifsonia xyli subsp. xyli str. CTCB07 tagatose-bisphosphate aldolase YP_062759.1 1993800 D 281090 CDS YP_062760.1 50955472 2939654 1994678..1995463 1 NC_006087.1 identified by sequence similarity; DeoR family transcriptional regulator 1995463 2939654 Lxx19350 Leifsonia xyli subsp. xyli str. CTCB07 DeoR family transcriptional regulator YP_062760.1 1994678 D 281090 CDS YP_062761.1 50955473 2939087 1995502..1996671 1 NC_006087.1 identified by sequence similarity; N-acetylglucosamine-6-phosphate deacetylase 1996671 nagA 2939087 nagA Leifsonia xyli subsp. xyli str. CTCB07 N-acetylglucosamine-6-phosphate deacetylase YP_062761.1 1995502 D 281090 CDS YP_062762.1 50955474 2939759 1996912..1997172 1 NC_006087.1 hypothetical protein 1997172 2939759 Lxx19370 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062762.1 1996912 D 281090 CDS YP_062763.1 50955475 2939343 1997317..1998900 1 NC_006087.1 identified by sequence similarity; hemagglutinin/hemolysin-like protein 1998900 2939343 Lxx19380 Leifsonia xyli subsp. xyli str. CTCB07 hemagglutinin/hemolysin-like protein YP_062763.1 1997317 D 281090 CDS YP_062764.1 50955476 2940279 complement(1998887..2000104) 1 NC_006087.1 identified by sequence similarity; sugar transporter 2000104 2940279 Lxx19390 Leifsonia xyli subsp. xyli str. CTCB07 sugar transporter YP_062764.1 1998887 R 281090 CDS YP_062765.1 50955477 2939700 2000572..2001444 1 NC_006087.1 identified by sequence similarity; formyletrahydrofolate deformylase 2001444 purU 2939700 purU Leifsonia xyli subsp. xyli str. CTCB07 formyletrahydrofolate deformylase YP_062765.1 2000572 D 281090 CDS YP_062766.1 50955478 2940391 2001458..2001823 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2001823 2940391 Lxx19410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062766.1 2001458 D 281090 CDS YP_062767.1 50955479 2939548 complement(2002305..2002430) 1 NC_006087.1 hypothetical protein 2002430 2939548 Lxx19420 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062767.1 2002305 R 281090 CDS YP_062768.1 50955480 2940514 2003218..2003322 1 NC_006087.1 hypothetical protein 2003322 2940514 Lxx19430 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062768.1 2003218 D 281090 CDS YP_062769.1 50955481 2940149 complement(2003866..2003946) 1 NC_006087.1 hypothetical protein 2003946 2940149 Lxx19440 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062769.1 2003866 R 281090 CDS YP_062770.1 50955482 2939549 complement(2004192..2004614) 1 NC_006087.1 hypothetical protein 2004614 2939549 Lxx19450 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062770.1 2004192 R 281090 CDS YP_062771.1 50955483 2939084 complement(2004762..2006507) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2006507 2939084 Lxx19460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062771.1 2004762 R 281090 CDS YP_062772.1 50955484 2940599 complement(2006553..2006678) 1 NC_006087.1 hypothetical protein 2006678 2940599 Lxx19470 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062772.1 2006553 R 281090 CDS YP_062773.1 50955485 2939127 complement(2006946..2007578) 1 NC_006087.1 identified by sequence similarity; N-acetylglucosamine-6-phosphate isomerase 2007578 nagB 2939127 nagB Leifsonia xyli subsp. xyli str. CTCB07 N-acetylglucosamine-6-phosphate isomerase YP_062773.1 2006946 R 281090 CDS YP_062774.1 50955486 2939455 complement(2008100..2009314) 1 NC_006087.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2009314 icd 2939455 icd Leifsonia xyli subsp. xyli str. CTCB07 isocitrate dehydrogenase YP_062774.1 2008100 R 281090 CDS YP_062775.1 50955487 2940380 2009461..2009913 1 NC_006087.1 identified by sequence similarity; spermidine acetyltransferase 2009913 speG 2940380 speG Leifsonia xyli subsp. xyli str. CTCB07 spermidine acetyltransferase YP_062775.1 2009461 D 281090 CDS YP_062776.1 50955488 2938697 2009897..2010235 1 NC_006087.1 identified by sequence similarity; DNA-binding protein 2010235 2938697 Lxx19510 Leifsonia xyli subsp. xyli str. CTCB07 DNA-binding protein YP_062776.1 2009897 D 281090 CDS YP_062777.1 50955489 2940080 2010290..2010760 1 NC_006087.1 hypothetical protein 2010760 2940080 Lxx19520 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062777.1 2010290 D 281090 CDS YP_062778.1 50955490 2939876 complement(2011842..2012453) 1 NC_006087.1 hypothetical protein 2012453 2939876 Lxx19540 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062778.1 2011842 R 281090 CDS YP_062779.1 50955491 2939225 complement(2012529..2013200) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 2013200 2939225 Lxx19550 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062779.1 2012529 R 281090 CDS YP_062780.1 50955492 2938578 complement(2013214..2013546) 1 NC_006087.1 identified by sequence similarity; nitrate/nitrite response regulator protein 2013546 narP 2938578 narP Leifsonia xyli subsp. xyli str. CTCB07 nitrate/nitrite response regulator protein YP_062780.1 2013214 R 281090 CDS YP_062781.1 50955493 2938370 complement(2013818..2014123) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2014123 2938370 Lxx19570 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062781.1 2013818 R 281090 CDS YP_062782.1 50955494 2939381 complement(2014174..2014743) 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 2014743 tetR 2939381 tetR Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_062782.1 2014174 R 281090 CDS YP_062783.1 50955495 2939384 complement(2015803..2016132) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2016132 2939384 Lxx19582 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062783.1 2015803 R 281090 CDS YP_062784.1 50955496 2939561 complement(2016133..2016606) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2016606 2939561 Lxx19584 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062784.1 2016133 R 281090 CDS YP_062785.1 50955497 2940512 complement(2018562..2020367) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 2020367 pimB 2940512 pimB Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062785.1 2018562 R 281090 CDS YP_062786.1 50955498 2938488 complement(2022535..2023323) 1 NC_006087.1 identified by sequence similarity; dimethylarginine dimethylaminohydrolase 2023323 ddaH 2938488 ddaH Leifsonia xyli subsp. xyli str. CTCB07 dimethylarginine dimethylaminohydrolase YP_062786.1 2022535 R 281090 CDS YP_062787.1 50955499 2939833 complement(2023906..2025486) 1 NC_006087.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2025486 purH 2939833 purH Leifsonia xyli subsp. xyli str. CTCB07 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_062787.1 2023906 R 281090 CDS YP_062788.1 50955500 2938374 complement(2025483..2026076) 1 NC_006087.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2026076 purN 2938374 purN Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylglycinamide formyltransferase YP_062788.1 2025483 R 281090 CDS YP_062789.1 50955501 2938538 complement(2026118..2027437) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2027437 2938538 Lxx19660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062789.1 2026118 R 281090 CDS YP_062790.1 50955502 2940187 complement(2028841..2030040) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2030040 2940187 Lxx19690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062790.1 2028841 R 281090 CDS YP_062791.1 50955503 2939605 complement(2030147..2031034) 1 NC_006087.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 2031034 sucD 2939605 sucD Leifsonia xyli subsp. xyli str. CTCB07 succinyl-CoA synthetase subunit alpha YP_062791.1 2030147 R 281090 CDS YP_062792.1 50955504 2938543 complement(2031061..2032224) 1 NC_006087.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2032224 sucC 2938543 sucC Leifsonia xyli subsp. xyli str. CTCB07 succinyl-CoA synthetase subunit beta YP_062792.1 2031061 R 281090 CDS YP_062793.1 50955505 2939488 2034005..2034595 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2034595 2939488 Lxx19730 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062793.1 2034005 D 281090 CDS YP_062794.1 50955506 2938536 complement(2035110..2037611) 1 NC_006087.1 identified by sequence similarity; ATP-dependent DNA helicase II 2037611 uvrD 2938536 uvrD Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent DNA helicase II YP_062794.1 2035110 R 281090 CDS YP_062795.1 50955507 2938560 complement(2037788..2038837) 1 NC_006087.1 identified by sequence similarity; glycerophosphoryl diester phosphodiesterase 2038837 glpQ 2938560 glpQ Leifsonia xyli subsp. xyli str. CTCB07 glycerophosphoryl diester phosphodiesterase YP_062795.1 2037788 R 281090 CDS YP_062796.1 50955508 2940082 2038901..2039419 1 NC_006087.1 hypothetical protein 2039419 2940082 Lxx19760 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062796.1 2038901 D 281090 CDS YP_062797.1 50955509 2938548 2039478..2040284 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2040284 2938548 Lxx19770 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062797.1 2039478 D 281090 CDS YP_062798.1 50955510 2939901 complement(2040368..2041879) 1 NC_006087.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2041879 guaA 2939901 guaA Leifsonia xyli subsp. xyli str. CTCB07 GMP synthase YP_062798.1 2040368 R 281090 CDS YP_062799.1 50955511 2939481 complement(2041992..2042435) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2042435 2939481 Lxx19790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062799.1 2041992 R 281090 CDS YP_062800.1 50955512 2939439 complement(2042440..2043240) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2043240 2939439 Lxx19800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062800.1 2042440 R 281090 CDS YP_062801.1 50955513 2939792 complement(2043331..2044722) 1 NC_006087.1 identified by sequence similarity; Na+/H+ antiporter 2044722 yhaU 2939792 yhaU Leifsonia xyli subsp. xyli str. CTCB07 Na+/H+ antiporter YP_062801.1 2043331 R 281090 CDS YP_062802.1 50955514 2939521 complement(2044726..2045307) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2045307 2939521 Lxx19820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062802.1 2044726 R 281090 CDS YP_062803.1 50955515 2939742 complement(2045455..2047296) 1 NC_006087.1 identified by sequence similarity; glycerol-3-phosphate dehydrogenase 2047296 glpD 2939742 glpD Leifsonia xyli subsp. xyli str. CTCB07 glycerol-3-phosphate dehydrogenase YP_062803.1 2045455 R 281090 CDS YP_062804.1 50955516 2938914 complement(2047332..2048450) 1 NC_006087.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 2048450 guaB 2938914 guaB Leifsonia xyli subsp. xyli str. CTCB07 inosine 5-monophosphate dehydrogenase YP_062804.1 2047332 R 281090 CDS YP_062805.1 50955517 2939107 complement(2048453..2049184) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2049184 2939107 Lxx19850 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062805.1 2048453 R 281090 CDS YP_062806.1 50955518 2939318 complement(2049340..2050842) 1 NC_006087.1 identified by sequence similarity; inosine-5'-monophosphate dehydrogenase 2050842 guaB 2939318 guaB Leifsonia xyli subsp. xyli str. CTCB07 inosine-5'-monophosphate dehydrogenase YP_062806.1 2049340 R 281090 CDS YP_062807.1 50955519 2939974 2051012..2051335 1 NC_006087.1 hypothetical protein 2051335 2939974 Lxx19870 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062807.1 2051012 D 281090 CDS YP_062808.1 50955520 2939403 complement(2051609..2051905) 1 NC_006087.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2051905 groES 2939403 groES Leifsonia xyli subsp. xyli str. CTCB07 co-chaperonin GroES YP_062808.1 2051609 R 281090 CDS YP_062809.1 50955521 2940119 2052005..2053216 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2053216 2940119 Lxx19890 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062809.1 2052005 D 281090 CDS YP_062810.1 50955522 2940401 complement(2053235..2053651) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2053651 2940401 Lxx19900 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062810.1 2053235 R 281090 CDS YP_062811.1 50955523 2938577 complement(2053823..2054905) 1 NC_006087.1 identified by sequence similarity; O-sialoglycoprotein endopeptidase 2054905 gcp 2938577 gcp Leifsonia xyli subsp. xyli str. CTCB07 O-sialoglycoprotein endopeptidase YP_062811.1 2053823 R 281090 CDS YP_062812.1 50955524 2938826 complement(2054902..2055348) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2055348 2938826 Lxx19920 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062812.1 2054902 R 281090 CDS YP_062813.1 50955525 2938544 complement(2055381..2056001) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2056001 2938544 Lxx19930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062813.1 2055381 R 281090 CDS YP_062814.1 50955526 2938737 complement(2056011..2056502) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2056502 2938737 Lxx19940 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062814.1 2056011 R 281090 CDS YP_062815.1 50955527 2940269 complement(2056511..2057629) 1 NC_006087.1 identified by sequence similarity; alanine racemase 2057629 alr 2940269 alr Leifsonia xyli subsp. xyli str. CTCB07 alanine racemase YP_062815.1 2056511 R 281090 CDS YP_062816.1 50955528 2938530 complement(2057626..2057982) 1 NC_006087.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2057982 acpS 2938530 acpS Leifsonia xyli subsp. xyli str. CTCB07 4'-phosphopantetheinyl transferase YP_062816.1 2057626 R 281090 CDS YP_062817.1 50955529 2939821 complement(2057988..2059838) 1 NC_006087.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 2059838 glmS 2939821 glmS Leifsonia xyli subsp. xyli str. CTCB07 glucosamine--fructose-6-phosphate aminotransferase YP_062817.1 2057988 R 281090 CDS YP_062818.1 50955530 2939466 2059882..2060850 1 NC_006087.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 2060850 coaA 2939466 coaA Leifsonia xyli subsp. xyli str. CTCB07 pantothenate kinase YP_062818.1 2059882 D 281090 CDS YP_062819.1 50955531 2938925 2060928..2061278 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2061278 2938925 Lxx19990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062819.1 2060928 D 281090 CDS YP_062820.1 50955532 2939379 2061331..2061657 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2061657 2939379 Lxx20000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062820.1 2061331 D 281090 CDS YP_062821.1 50955533 2938565 complement(2062020..2063381) 1 NC_006087.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2063381 glmM 2938565 glmM Leifsonia xyli subsp. xyli str. CTCB07 phosphoglucosamine mutase YP_062821.1 2062020 R 281090 CDS YP_062822.1 50955534 2940067 complement(2063409..2063915) 1 NC_006087.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2063915 rpsI 2940067 rpsI Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S9 YP_062822.1 2063409 R 281090 CDS YP_062823.1 50955535 2939487 complement(2063966..2064412) 1 NC_006087.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2064412 rplM 2939487 rplM Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L13 YP_062823.1 2063966 R 281090 CDS YP_062824.1 50955536 2939298 complement(2064794..2065660) 1 NC_006087.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2065660 truA 2939298 truA Leifsonia xyli subsp. xyli str. CTCB07 tRNA pseudouridine synthase A YP_062824.1 2064794 R 281090 CDS YP_062825.1 50955537 2939083 2065746..2067689 1 NC_006087.1 identified by sequence similarity; lipopolysaccharide modification acyltransferase 2067689 yrhL 2939083 yrhL Leifsonia xyli subsp. xyli str. CTCB07 lipopolysaccharide modification acyltransferase YP_062825.1 2065746 D 281090 CDS YP_062826.1 50955538 2939579 complement(2067703..2067897) 1 NC_006087.1 hypothetical protein 2067897 2939579 Lxx20060 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062826.1 2067703 R 281090 CDS YP_062827.1 50955539 2940135 complement(2068168..2068647) 1 NC_006087.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2068647 rplQ 2940135 rplQ Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L17 YP_062827.1 2068168 R 281090 CDS YP_062828.1 50955540 2939567 complement(2068700..2069779) 1 NC_006087.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2069779 rpoA 2939567 rpoA Leifsonia xyli subsp. xyli str. CTCB07 DNA-directed RNA polymerase subunit alpha YP_062828.1 2068700 R 281090 CDS YP_062829.1 50955541 2938981 complement(2069811..2070209) 1 NC_006087.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2070209 rpsK 2938981 rpsK Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S11 YP_062829.1 2069811 R 281090 CDS YP_062830.1 50955542 2939410 complement(2070239..2070613) 1 NC_006087.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2070613 rpsM 2939410 rpsM Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S13 YP_062830.1 2070239 R 281090 CDS YP_062831.1 50955543 2940106 complement(2070763..2070876) 1 NC_006087.1 identified by sequence similarity; 50S ribosomal protein L36 2070876 rpmJ 2940106 rpmJ Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L36 YP_062831.1 2070763 R 281090 CDS YP_062832.1 50955544 2938701 complement(2070957..2071178) 1 NC_006087.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2071178 infA 2938701 infA Leifsonia xyli subsp. xyli str. CTCB07 translation initiation factor IF-1 YP_062832.1 2070957 R 281090 CDS YP_062833.1 50955545 2938463 complement(2071317..2072147) 1 NC_006087.1 identified by sequence similarity; methionine aminopeptidase 2072147 map 2938463 map Leifsonia xyli subsp. xyli str. CTCB07 methionine aminopeptidase YP_062833.1 2071317 R 281090 CDS YP_062834.1 50955546 2939395 complement(2072155..2072754) 1 NC_006087.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2072754 adk 2939395 adk Leifsonia xyli subsp. xyli str. CTCB07 adenylate kinase YP_062834.1 2072155 R 281090 CDS YP_062835.1 50955547 2939414 complement(2072760..2074082) 1 NC_006087.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2074082 secY 2939414 secY Leifsonia xyli subsp. xyli str. CTCB07 preprotein translocase subunit SecY YP_062835.1 2072760 R 281090 CDS YP_062836.1 50955548 2938303 complement(2074163..2074795) 1 NC_006087.1 late assembly protein; 50S ribosomal protein L15 2074795 rplO 2938303 rplO Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L15 YP_062836.1 2074163 R 281090 CDS YP_062837.1 50955549 2940277 complement(2074795..2074977) 1 NC_006087.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 2074977 rpmD 2940277 rpmD Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L30 YP_062837.1 2074795 R 281090 CDS YP_062838.1 50955550 2940394 complement(2074977..2075675) 1 NC_006087.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2075675 rpsE 2940394 rpsE Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S5 YP_062838.1 2074977 R 281090 CDS YP_062839.1 50955551 2939655 complement(2075702..2076076) 1 NC_006087.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2076076 rplR 2939655 rplR Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L18 YP_062839.1 2075702 R 281090 CDS YP_062840.1 50955552 2938344 complement(2076079..2076615) 1 NC_006087.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2076615 rplF 2938344 rplF Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L6 YP_062840.1 2076079 R 281090 CDS YP_062841.1 50955553 2938968 complement(2076622..2077020) 1 NC_006087.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2077020 rpsH 2938968 rpsH Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S8 YP_062841.1 2076622 R 281090 CDS YP_062842.1 50955554 2938555 complement(2077137..2077724) 1 NC_006087.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2077724 rplE 2938555 rplE Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L5 YP_062842.1 2077137 R 281090 CDS YP_062843.1 50955555 2938388 complement(2077724..2078083) 1 NC_006087.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2078083 rplX 2938388 rplX Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L24 YP_062843.1 2077724 R 281090 CDS YP_062844.1 50955556 2938763 complement(2078087..2078455) 1 NC_006087.1 identified by sequence similarity; 50S ribosomal protein L14 2078455 rplN 2938763 rplN Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L14 YP_062844.1 2078087 R 281090 CDS YP_062845.1 50955557 2938346 complement(2078452..2078757) 1 NC_006087.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2078757 rpsQ 2938346 rpsQ Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S17 YP_062845.1 2078452 R 281090 CDS YP_062846.1 50955558 2939699 complement(2078757..2079101) 1 NC_006087.1 identified by sequence similarity; 50S ribosomal protein L29 2079101 rpmC 2939699 rpmC Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L29 YP_062846.1 2078757 R 281090 CDS YP_062847.1 50955559 2938553 complement(2079101..2079520) 1 NC_006087.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2079520 rplP 2938553 rplP Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L16 YP_062847.1 2079101 R 281090 CDS YP_062848.1 50955560 2939844 complement(2079523..2080293) 1 NC_006087.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2080293 rpsC 2939844 rpsC Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S3 YP_062848.1 2079523 R 281090 CDS YP_062849.1 50955561 2939896 complement(2080293..2080703) 1 NC_006087.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2080703 rplV 2939896 rplV Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L22 YP_062849.1 2080293 R 281090 CDS YP_062850.1 50955562 2938498 complement(2080729..2081010) 1 NC_006087.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2081010 rpsS 2938498 rpsS Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S19 YP_062850.1 2080729 R 281090 CDS YP_062851.1 50955563 2940453 complement(2081035..2081874) 1 NC_006087.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2081874 rplB 2940453 rplB Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L2 YP_062851.1 2081035 R 281090 CDS YP_062852.1 50955564 2938554 complement(2081899..2082198) 1 NC_006087.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2082198 rplW 2938554 rplW Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L23 YP_062852.1 2081899 R 281090 CDS YP_062853.1 50955565 2939571 complement(2082198..2082863) 1 NC_006087.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2082863 rplD 2939571 rplD Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L4 YP_062853.1 2082198 R 281090 CDS YP_062854.1 50955566 2939211 complement(2082868..2083527) 1 NC_006087.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2083527 rplC 2939211 rplC Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L3 YP_062854.1 2082868 R 281090 CDS YP_062855.1 50955567 2939468 complement(2083542..2083850) 1 NC_006087.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2083850 rpsJ 2939468 rpsJ Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S10 YP_062855.1 2083542 R 281090 CDS YP_062856.1 50955568 2938524 complement(2084173..2085420) 1 NC_006087.1 identified by sequence similarity; glycosyltransferase 2085420 2938524 Lxx20370 Leifsonia xyli subsp. xyli str. CTCB07 glycosyltransferase YP_062856.1 2084173 R 281090 CDS YP_062857.1 50955569 2939735 complement(2085485..2086225) 1 NC_006087.1 identified by sequence similarity; glycosyltransferase 2086225 2939735 Lxx20375 Leifsonia xyli subsp. xyli str. CTCB07 glycosyltransferase YP_062857.1 2085485 R 281090 CDS YP_062858.1 50955570 2940041 complement(2087596..2089161) 1 NC_006087.1 identified by sequence similarity; hemagglutinin-like protein 2089161 2940041 Lxx20380 Leifsonia xyli subsp. xyli str. CTCB07 hemagglutinin-like protein YP_062858.1 2087596 R 281090 CDS YP_062859.1 50955571 2940223 complement(2089294..2090487) 1 NC_006087.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2090487 tufA 2940223 tufA Leifsonia xyli subsp. xyli str. CTCB07 elongation factor Tu YP_062859.1 2089294 R 281090 CDS YP_062860.1 50955572 2939643 complement(2090620..2092722) 1 NC_006087.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2092722 fusA 2939643 fusA Leifsonia xyli subsp. xyli str. CTCB07 elongation factor G YP_062860.1 2090620 R 281090 CDS YP_062861.1 50955573 2939445 complement(2092819..2093289) 1 NC_006087.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2093289 rpsG 2939445 rpsG Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S7 YP_062861.1 2092819 R 281090 CDS YP_062862.1 50955574 2938728 complement(2093289..2093663) 1 NC_006087.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2093663 rpsL 2938728 rpsL Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S12 YP_062862.1 2093289 R 281090 CDS YP_062863.1 50955575 2940024 complement(2094023..2094517) 1 NC_006087.1 hypothetical protein 2094517 2940024 Lxx20430 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062863.1 2094023 R 281090 CDS YP_062864.1 50955576 2940310 complement(2094531..2095622) 1 NC_006087.1 hypothetical protein 2095622 2940310 Lxx20440 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062864.1 2094531 R 281090 CDS YP_062865.1 50955577 2940420 complement(2095774..2096700) 1 NC_006087.1 identified by sequence similarity; ABC-type Mn2+/Zn2+ transport systems, permease 2096700 mtsC 2940420 mtsC Leifsonia xyli subsp. xyli str. CTCB07 ABC-type Mn2+/Zn2+ transport systems, permease YP_062865.1 2095774 R 281090 CDS YP_062866.1 50955578 2939530 complement(2097457..2098305) 1 NC_006087.1 hypothetical protein 2098305 2939530 Lxx20480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062866.1 2097457 R 281090 CDS YP_062867.1 50955579 2938785 complement(2100751..2102613) 1 NC_006087.1 hypothetical protein 2102613 2938785 Lxx20520 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062867.1 2100751 R 281090 CDS YP_062868.1 50955580 2939307 complement(2102708..2102959) 1 NC_006087.1 hypothetical protein 2102959 2939307 Lxx20530 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062868.1 2102708 R 281090 CDS YP_062869.1 50955581 2940561 complement(2103050..2103595) 1 NC_006087.1 hypothetical protein 2103595 2940561 Lxx20540 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062869.1 2103050 R 281090 CDS YP_062870.1 50955582 2939133 complement(2105886..2106572) 1 NC_006087.1 hypothetical protein 2106572 2939133 Lxx20580 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062870.1 2105886 R 281090 CDS YP_062871.1 50955583 2940457 complement(2107265..2107387) 1 NC_006087.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 2107387 rpmJ 2940457 rpmJ Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L36 YP_062871.1 2107265 R 281090 CDS YP_062872.1 50955584 2939092 complement(2108480..2109691) 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 2109691 tnp 2939092 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_062872.1 2108480 R 281090 CDS YP_062873.1 50955585 2939471 complement(2112062..2115937) 1 NC_006087.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 2115937 rpoC 2939471 rpoC Leifsonia xyli subsp. xyli str. CTCB07 DNA-directed RNA polymerase subunit beta' YP_062873.1 2112062 R 281090 CDS YP_062874.1 50955586 2938547 complement(2115985..2119482) 1 NC_006087.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 2119482 rpoB 2938547 rpoB Leifsonia xyli subsp. xyli str. CTCB07 DNA-directed RNA polymerase subunit beta YP_062874.1 2115985 R 281090 CDS YP_062875.1 50955587 2938419 2119833..2120699 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2120699 2938419 Lxx20650 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062875.1 2119833 D 281090 CDS YP_062876.1 50955588 2938489 complement(2120738..2121355) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2121355 2938489 Lxx20660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062876.1 2120738 R 281090 CDS YP_062877.1 50955589 2938557 complement(2121356..2121931) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2121931 2938557 Lxx20670 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062877.1 2121356 R 281090 CDS YP_062878.1 50955590 2938364 complement(2122025..2122345) 1 NC_006087.1 hypothetical protein 2122345 2938364 Lxx20680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062878.1 2122025 R 281090 CDS YP_062879.1 50955591 2939617 complement(2122963..2123163) 1 NC_006087.1 hypothetical protein 2123163 2939617 Lxx20690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062879.1 2122963 R 281090 CDS YP_062880.1 50955592 2938813 complement(2129556..2130104) 1 NC_006087.1 hypothetical protein 2130104 2938813 Lxx20740 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062880.1 2129556 R 281090 CDS YP_062881.1 50955593 2938976 2130580..2131383 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2131383 2938976 Lxx20760 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062881.1 2130580 D 281090 CDS YP_062882.1 50955594 2938563 complement(2131441..2133804) 1 NC_006087.1 identified by sequence similarity; ATP-dependent DNA helicase 2133804 2938563 Lxx20770 Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent DNA helicase YP_062882.1 2131441 R 281090 CDS YP_062883.1 50955595 2940347 2133858..2135453 1 NC_006087.1 identified by sequence similarity; ATP-dependent RNA helicase 2135453 rhlE 2940347 rhlE Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent RNA helicase YP_062883.1 2133858 D 281090 CDS YP_062884.1 50955596 2939641 2135512..2136069 1 NC_006087.1 hypothetical protein 2136069 2939641 Lxx20790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062884.1 2135512 D 281090 CDS YP_062885.1 50955597 2940333 complement(2136332..2136907) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2136907 2940333 Lxx20800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062885.1 2136332 R 281090 CDS YP_062886.1 50955598 2938552 2137027..2137677 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2137677 2938552 Lxx20810 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062886.1 2137027 D 281090 CDS YP_062887.1 50955599 2940334 2139972..2140757 1 NC_006087.1 identified by sequence similarity; DNA glycosylase 2140757 2940334 Lxx20840 Leifsonia xyli subsp. xyli str. CTCB07 DNA glycosylase YP_062887.1 2139972 D 281090 CDS YP_062888.1 50955600 2939444 2140969..2142615 1 NC_006087.1 identified by sequence similarity; LytR family transcriptional regulator 2142615 cpsA 2939444 cpsA Leifsonia xyli subsp. xyli str. CTCB07 LytR family transcriptional regulator YP_062888.1 2140969 D 281090 CDS YP_062889.1 50955601 2940033 2142827..2143231 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2143231 2940033 Lxx20860 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062889.1 2142827 D 281090 CDS YP_062890.1 50955602 2940517 complement(2143212..2143823) 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 2143823 tetR 2940517 tetR Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_062890.1 2143212 R 281090 CDS YP_062891.1 50955603 2939077 2143879..2144520 1 NC_006087.1 identified by sequence similarity; biotin synthase 2144520 bioY 2939077 bioY Leifsonia xyli subsp. xyli str. CTCB07 biotin synthase YP_062891.1 2143879 D 281090 CDS YP_062892.1 50955604 2940122 2144517..2145575 1 NC_006087.1 identified by sequence similarity; O-succinylbenzoate-CoA ligase 2145575 menE 2940122 menE Leifsonia xyli subsp. xyli str. CTCB07 O-succinylbenzoate-CoA ligase YP_062892.1 2144517 D 281090 CDS YP_062893.1 50955605 2939432 2145568..2146683 1 NC_006087.1 identified by sequence similarity; acetyl-CoA acyltransferase 2146683 yhfS 2939432 yhfS Leifsonia xyli subsp. xyli str. CTCB07 acetyl-CoA acyltransferase YP_062893.1 2145568 D 281090 CDS YP_062894.1 50955606 2939544 2146680..2147366 1 NC_006087.1 identified by sequence similarity; ABC- transporter, ATP-binding protein 2147366 cbiO 2939544 cbiO Leifsonia xyli subsp. xyli str. CTCB07 ABC- transporter, ATP-binding protein YP_062894.1 2146680 D 281090 CDS YP_062895.1 50955607 2939841 2147360..2147971 1 NC_006087.1 identified by sequence similarity; ABC-type cobalt transport system, permease 2147971 cbiQ 2939841 cbiQ Leifsonia xyli subsp. xyli str. CTCB07 ABC-type cobalt transport system, permease YP_062895.1 2147360 D 281090 CDS YP_062896.1 50955608 2939214 2147968..2148321 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2148321 2939214 Lxx20930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062896.1 2147968 D 281090 CDS YP_062897.1 50955609 2938718 2148501..2148989 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2148989 2938718 Lxx20940 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062897.1 2148501 D 281090 CDS YP_062898.1 50955610 2939670 complement(2149617..2150888) 1 NC_006087.1 identified by sequence similarity; transport protein 2150888 mntH 2939670 mntH Leifsonia xyli subsp. xyli str. CTCB07 transport protein YP_062898.1 2149617 R 281090 CDS YP_062899.1 50955611 2939538 2151041..2152327 1 NC_006087.1 identified by sequence similarity; LytR family transcriptional regulator 2152327 lytR 2939538 lytR Leifsonia xyli subsp. xyli str. CTCB07 LytR family transcriptional regulator YP_062899.1 2151041 D 281090 CDS YP_062900.1 50955612 2940531 2152402..2152683 1 NC_006087.1 hypothetical protein 2152683 2940531 Lxx20970 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062900.1 2152402 D 281090 CDS YP_062901.1 50955613 2938556 2152832..2153020 1 NC_006087.1 identified by sequence similarity; ferrous iron transport protein A 2153020 feoA 2938556 feoA Leifsonia xyli subsp. xyli str. CTCB07 ferrous iron transport protein A YP_062901.1 2152832 D 281090 CDS YP_062902.1 50955614 2939726 2153017..2154918 1 NC_006087.1 identified by sequence similarity; ferrous iron transport protein B 2154918 feoB 2939726 feoB Leifsonia xyli subsp. xyli str. CTCB07 ferrous iron transport protein B YP_062902.1 2153017 D 281090 CDS YP_062903.1 50955615 2938336 2155011..2155481 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2155481 2938336 Lxx21000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062903.1 2155011 D 281090 CDS YP_062904.1 50955616 2938449 complement(2155489..2156709) 1 NC_006087.1 identified by sequence similarity; iron-dependent peroxidase 2156709 2938449 Lxx21010 Leifsonia xyli subsp. xyli str. CTCB07 iron-dependent peroxidase YP_062904.1 2155489 R 281090 CDS YP_062905.1 50955617 2939125 complement(2156706..2157170) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2157170 2939125 Lxx21020 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062905.1 2156706 R 281090 CDS YP_062906.1 50955618 2940210 2157448..2157894 1 NC_006087.1 hypothetical protein 2157894 2940210 Lxx21030 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062906.1 2157448 D 281090 CDS YP_062907.1 50955619 2938559 2157894..2158550 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2158550 2938559 Lxx21040 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062907.1 2157894 D 281090 CDS YP_062908.1 50955620 2940156 2158837..2158908 1 NC_006087.1 hypothetical protein 2158908 2940156 Lxx21050 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062908.1 2158837 D 281090 CDS YP_062909.1 50955621 2939529 complement(2159099..2161018) 1 NC_006087.1 hypothetical protein 2161018 2939529 Lxx21060 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062909.1 2159099 R 281090 CDS YP_062910.1 50955622 2940534 complement(2161693..2162364) 1 NC_006087.1 hypothetical protein 2162364 2940534 Lxx21070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062910.1 2161693 R 281090 CDS YP_062911.1 50955623 2940325 complement(2162572..2163915) 1 NC_006087.1 identified by sequence similarity; N-acetyl-glucosamine transferase 2163915 2940325 Lxx21080 Leifsonia xyli subsp. xyli str. CTCB07 N-acetyl-glucosamine transferase YP_062911.1 2162572 R 281090 CDS YP_062912.1 50955624 2938824 complement(2163912..2165060) 1 NC_006087.1 identified by sequence similarity; UDP-N-acetylglucosamine 2-epimerase 2165060 wecB 2938824 wecB Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetylglucosamine 2-epimerase YP_062912.1 2163912 R 281090 CDS YP_062913.1 50955625 2940215 complement(2165057..2165611) 1 NC_006087.1 hypothetical protein 2165611 2940215 Lxx21090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062913.1 2165057 R 281090 CDS YP_062914.1 50955626 2940189 complement(2165892..2166953) 1 NC_006087.1 hypothetical protein 2166953 2940189 Lxx21110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062914.1 2165892 R 281090 CDS YP_062915.1 50955627 2939122 2167969..2168523 1 NC_006087.1 identified by sequence similarity; signal peptidase I 2168523 lepB 2939122 lepB Leifsonia xyli subsp. xyli str. CTCB07 signal peptidase I YP_062915.1 2167969 D 281090 CDS YP_062916.1 50955628 2939435 2170576..2171220 1 NC_006087.1 identified by sequence similarity; two-component system response regulator 2171220 2939435 Lxx21140 Leifsonia xyli subsp. xyli str. CTCB07 two-component system response regulator YP_062916.1 2170576 D 281090 CDS YP_062917.1 50955629 2938519 2172615..2173826 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 2173826 tnp 2938519 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_062917.1 2172615 D 281090 CDS YP_062918.1 50955630 2939616 2173924..2174889 1 NC_006087.1 hypothetical protein 2174889 2939616 Lxx21170 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062918.1 2173924 D 281090 CDS YP_062919.1 50955631 2939743 complement(2174886..2175602) 1 NC_006087.1 identified by sequence similarity; Mg++ transport, ATPase protein 2175602 mtgC 2939743 mtgC Leifsonia xyli subsp. xyli str. CTCB07 Mg++ transport, ATPase protein YP_062919.1 2174886 R 281090 CDS YP_062920.1 50955632 2939586 complement(2175612..2178290) 1 NC_006087.1 identified by sequence similarity; Mg++ transport, ATPase protein 2178290 2939586 Lxx21190 Leifsonia xyli subsp. xyli str. CTCB07 Mg++ transport, ATPase protein YP_062920.1 2175612 R 281090 CDS YP_062921.1 50955633 2938937 complement(2179226..2179642) 1 NC_006087.1 hypothetical protein 2179642 2938937 Lxx21200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062921.1 2179226 R 281090 CDS YP_062922.1 50955634 2940573 2179736..2182246 1 NC_006087.1 hypothetical protein 2182246 2940573 Lxx21210 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062922.1 2179736 D 281090 CDS YP_062923.1 50955635 2938264 complement(2182308..2183048) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2183048 2938264 Lxx21220 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062923.1 2182308 R 281090 CDS YP_062924.1 50955636 2938476 complement(2183074..2185611) 1 NC_006087.1 identified by sequence similarity; LuxR family transcriptional regulator 2185611 2938476 Lxx21230 Leifsonia xyli subsp. xyli str. CTCB07 LuxR family transcriptional regulator YP_062924.1 2183074 R 281090 CDS YP_062925.1 50955637 2940509 complement(2185601..2186662) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2186662 2940509 Lxx21240 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062925.1 2185601 R 281090 CDS YP_062926.1 50955638 2940257 complement(2186655..2187209) 1 NC_006087.1 identified by sequence similarity; type I signal peptidase 2187209 2940257 Lxx21250 Leifsonia xyli subsp. xyli str. CTCB07 type I signal peptidase YP_062926.1 2186655 R 281090 CDS YP_062927.1 50955639 2939873 complement(2187327..2187932) 1 NC_006087.1 hypothetical protein 2187932 2939873 Lxx21260 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062927.1 2187327 R 281090 CDS YP_062928.1 50955640 2939459 2189770..2190597 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2190597 2939459 Lxx21280 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062928.1 2189770 D 281090 CDS YP_062929.1 50955641 2938739 complement(2190607..2190861) 1 NC_006087.1 hypothetical protein 2190861 2938739 Lxx21290 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062929.1 2190607 R 281090 CDS YP_062930.1 50955642 2939705 complement(2191017..2191952) 1 NC_006087.1 hypothetical protein 2191952 2939705 Lxx21300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062930.1 2191017 R 281090 CDS YP_062931.1 50955643 2938375 complement(2192093..2193478) 1 NC_006087.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 2193478 radA 2938375 radA Leifsonia xyli subsp. xyli str. CTCB07 DNA repair protein RadA YP_062931.1 2192093 R 281090 CDS YP_062932.1 50955644 2938269 complement(2193561..2194220) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2194220 2938269 Lxx21320 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062932.1 2193561 R 281090 CDS YP_062933.1 50955645 2939291 complement(2194242..2194739) 1 NC_006087.1 catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis; N-acetylglutamate synthase 2194739 2939291 Lxx21330 Leifsonia xyli subsp. xyli str. CTCB07 N-acetylglutamate synthase YP_062933.1 2194242 R 281090 CDS YP_062934.1 50955646 2940558 complement(2194841..2197360) 1 NC_006087.1 identified by sequence similarity; ATP-dependent Clp protease, ATP-binding subunit 2197360 clpC 2940558 clpC Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent Clp protease, ATP-binding subunit YP_062934.1 2194841 R 281090 CDS YP_062935.1 50955647 2939452 complement(2197494..2197916) 1 NC_006087.1 hypothetical protein 2197916 2939452 Lxx21350 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062935.1 2197494 R 281090 CDS YP_062936.1 50955648 2939154 complement(2198142..2199605) 1 NC_006087.1 identified by sequence similarity; cardiolipin synthase 2199605 cls 2939154 cls Leifsonia xyli subsp. xyli str. CTCB07 cardiolipin synthase YP_062936.1 2198142 R 281090 CDS YP_062937.1 50955649 2939980 complement(2200857..2201030) 1 NC_006087.1 hypothetical protein 2201030 2939980 Lxx21380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062937.1 2200857 R 281090 CDS YP_062938.1 50955650 2940419 2201131..2201955 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2201955 2940419 Lxx21390 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062938.1 2201131 D 281090 CDS YP_062939.1 50955651 2940020 complement(2201985..2203499) 1 NC_006087.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 2203499 lysS 2940020 lysS Leifsonia xyli subsp. xyli str. CTCB07 lysyl-tRNA synthetase YP_062939.1 2201985 R 281090 CDS YP_062940.1 50955652 2940613 complement(2203542..2204405) 1 NC_006087.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2204405 panC 2940613 panC Leifsonia xyli subsp. xyli str. CTCB07 pantoate--beta-alanine ligase YP_062940.1 2203542 R 281090 CDS YP_062941.1 50955653 2938902 complement(2204541..2205323) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2205323 2938902 Lxx21420 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062941.1 2204541 R 281090 CDS YP_062942.1 50955654 2940403 complement(2205320..2207194) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2207194 2940403 Lxx21430 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062942.1 2205320 R 281090 CDS YP_062943.1 50955655 2939230 complement(2207191..2207793) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2207793 2939230 Lxx21440 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062943.1 2207191 R 281090 CDS YP_062944.1 50955656 2939290 complement(2208130..2208666) 1 NC_006087.1 identified by sequence similarity; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2208666 folK 2939290 folK Leifsonia xyli subsp. xyli str. CTCB07 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_062944.1 2208130 R 281090 CDS YP_062945.1 50955657 2938361 complement(2208663..2209043) 1 NC_006087.1 identified by sequence similarity; dihydroneopterin aldolase 2209043 folB 2938361 folB Leifsonia xyli subsp. xyli str. CTCB07 dihydroneopterin aldolase YP_062945.1 2208663 R 281090 CDS YP_062946.1 50955658 2940074 complement(2209027..2209851) 1 NC_006087.1 identified by sequence similarity; dihydropteroate synthase 2209851 folP 2940074 folP Leifsonia xyli subsp. xyli str. CTCB07 dihydropteroate synthase YP_062946.1 2209027 R 281090 CDS YP_062947.1 50955659 2939497 complement(2209836..2210411) 1 NC_006087.1 identified by sequence similarity; GTP cyclohydrolase I 2210411 folE 2939497 folE Leifsonia xyli subsp. xyli str. CTCB07 GTP cyclohydrolase I YP_062947.1 2209836 R 281090 CDS YP_062948.1 50955660 2939421 complement(2210423..2212426) 1 NC_006087.1 identified by sequence similarity; cell division protein 2212426 ftsH 2939421 ftsH Leifsonia xyli subsp. xyli str. CTCB07 cell division protein YP_062948.1 2210423 R 281090 CDS YP_062949.1 50955661 2940293 complement(2212511..2213062) 1 NC_006087.1 identified by sequence similarity; hypoxanthine phosphoribosyltransferase 2213062 hpt 2940293 hpt Leifsonia xyli subsp. xyli str. CTCB07 hypoxanthine phosphoribosyltransferase YP_062949.1 2212511 R 281090 CDS YP_062950.1 50955662 2940259 complement(2213079..2214077) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2214077 2940259 Lxx21520 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062950.1 2213079 R 281090 CDS YP_062951.1 50955663 2938714 2214209..2214700 1 NC_006087.1 identified by sequence similarity; inorganic pyrophosphatase 2214700 ppa 2938714 ppa Leifsonia xyli subsp. xyli str. CTCB07 inorganic pyrophosphatase YP_062951.1 2214209 D 281090 CDS YP_062952.1 50955664 2940610 complement(2214764..2215966) 1 NC_006087.1 identified by sequence similarity; peptidoglycan lytic protein P45 2215966 2940610 Lxx21540 Leifsonia xyli subsp. xyli str. CTCB07 peptidoglycan lytic protein P45 YP_062952.1 2214764 R 281090 CDS YP_062953.1 50955665 2940281 complement(2216031..2217248) 1 NC_006087.1 identified by sequence similarity; cell wall binding protein 2217248 2940281 Lxx21550 Leifsonia xyli subsp. xyli str. CTCB07 cell wall binding protein YP_062953.1 2216031 R 281090 CDS YP_062954.1 50955666 2938727 complement(2217969..2218907) 1 NC_006087.1 identified by sequence similarity; phage-related integrase 2218907 2938727 Lxx21555 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase YP_062954.1 2217969 R 281090 CDS YP_062955.1 50955667 2940435 complement(2219132..2219275) 1 NC_006087.1 hypothetical protein 2219275 2940435 Lxx21590 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062955.1 2219132 R 281090 CDS YP_062956.1 50955668 2940000 complement(2219734..2219940) 1 NC_006087.1 identified by sequence similarity; integrase 2219940 int 2940000 int Leifsonia xyli subsp. xyli str. CTCB07 integrase YP_062956.1 2219734 R 281090 CDS YP_062957.1 50955669 2940054 2222095..2223288 1 NC_006087.1 identified by sequence similarity; Na+/H+ dicarboxylate symporter 2223288 dctA 2940054 dctA Leifsonia xyli subsp. xyli str. CTCB07 Na+/H+ dicarboxylate symporter YP_062957.1 2222095 D 281090 CDS YP_062958.1 50955670 2938518 complement(2223377..2225167) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2225167 2938518 Lxx21640 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062958.1 2223377 R 281090 CDS YP_062959.1 50955671 2939588 complement(2225234..2225959) 1 NC_006087.1 identified by sequence similarity; signal peptidase I 2225959 2939588 Lxx21650 Leifsonia xyli subsp. xyli str. CTCB07 signal peptidase I YP_062959.1 2225234 R 281090 CDS YP_062960.1 50955672 2939275 complement(2226045..2226599) 1 NC_006087.1 hypothetical protein 2226599 2939275 Lxx21660 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062960.1 2226045 R 281090 CDS YP_062961.1 50955673 2938293 complement(2226739..2227680) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2227680 2938293 Lxx21670 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062961.1 2226739 R 281090 CDS YP_062962.1 50955674 2940217 complement(2231243..2231893) 1 NC_006087.1 identified by sequence similarity; ECF subfamily RNA polymerase sigma-70 factor 2231893 2940217 Lxx21680 Leifsonia xyli subsp. xyli str. CTCB07 ECF subfamily RNA polymerase sigma-70 factor YP_062962.1 2231243 R 281090 CDS YP_062963.1 50955675 2940368 2232154..2234403 1 NC_006087.1 identified by sequence similarity; LuxR family transcriptional regulator 2234403 2940368 Lxx21690 Leifsonia xyli subsp. xyli str. CTCB07 LuxR family transcriptional regulator YP_062963.1 2232154 D 281090 CDS YP_062964.1 50955676 2940322 2234765..2235265 1 NC_006087.1 hypothetical protein 2235265 2940322 Lxx21700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062964.1 2234765 D 281090 CDS YP_062965.1 50955677 2940365 2235523..2237361 1 NC_006087.1 identified by sequence similarity; asparagine synthase 2237361 asn 2940365 asn Leifsonia xyli subsp. xyli str. CTCB07 asparagine synthase YP_062965.1 2235523 D 281090 CDS YP_062966.1 50955678 2939827 complement(2237371..2237667) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2237667 2939827 Lxx21720 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062966.1 2237371 R 281090 CDS YP_062967.1 50955679 2940320 2237877..2238173 1 NC_006087.1 hypothetical protein 2238173 2940320 Lxx21730 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062967.1 2237877 D 281090 CDS YP_062968.1 50955680 2939076 2238199..2238363 1 NC_006087.1 hypothetical protein 2238363 2939076 Lxx21740 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062968.1 2238199 D 281090 CDS YP_062969.1 50955681 2940383 2238458..2239498 1 NC_006087.1 identified by sequence similarity; oxidoreductase 2239498 2940383 Lxx21750 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_062969.1 2238458 D 281090 CDS YP_062970.1 50955682 2940283 2241448..2242095 1 NC_006087.1 identified by sequence similarity; UDP-N-acetyl-D-mannosaminuronic acid transferase 2242095 tagA 2940283 tagA Leifsonia xyli subsp. xyli str. CTCB07 UDP-N-acetyl-D-mannosaminuronic acid transferase YP_062970.1 2241448 D 281090 CDS YP_062971.1 50955683 2940263 2242095..2242796 1 NC_006087.1 hypothetical protein 2242796 2940263 Lxx21790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062971.1 2242095 D 281090 CDS YP_062972.1 50955684 2938266 complement(2242965..2243924) 1 NC_006087.1 identified by sequence similarity; prolyl aminopeptidase 2243924 pip 2938266 pip Leifsonia xyli subsp. xyli str. CTCB07 prolyl aminopeptidase YP_062972.1 2242965 R 281090 CDS YP_062973.1 50955685 2939772 2243972..2244508 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2244508 2939772 Lxx21810 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062973.1 2243972 D 281090 CDS YP_062974.1 50955686 2938457 complement(2244573..2246639) 1 NC_006087.1 identified by sequence similarity; acyl-CoA oxidase 2246639 acx2 2938457 acx2 Leifsonia xyli subsp. xyli str. CTCB07 acyl-CoA oxidase YP_062974.1 2244573 R 281090 CDS YP_062975.1 50955687 2940132 complement(2246845..2248740) 1 NC_006087.1 identified by sequence similarity; ATP-dependent DNA helicase 2248740 recQ 2940132 recQ Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent DNA helicase YP_062975.1 2246845 R 281090 CDS YP_062976.1 50955688 2940390 2249180..2250727 1 NC_006087.1 identified by sequence similarity; L-asparagine permease 2250727 ansP 2940390 ansP Leifsonia xyli subsp. xyli str. CTCB07 L-asparagine permease YP_062976.1 2249180 D 281090 CDS YP_062977.1 50955689 2940055 2250815..2251423 1 NC_006087.1 identified by sequence similarity; ABC-type transporter, permease 2251423 2940055 Lxx21850 Leifsonia xyli subsp. xyli str. CTCB07 ABC-type transporter, permease YP_062977.1 2250815 D 281090 CDS YP_062978.1 50955690 2940175 2251427..2253094 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 2253094 2940175 Lxx21860 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_062978.1 2251427 D 281090 CDS YP_062979.1 50955691 2938757 2253091..2253885 1 NC_006087.1 identified by sequence similarity; cobalt ABC transporter permease 2253885 2938757 Lxx21870 Leifsonia xyli subsp. xyli str. CTCB07 cobalt ABC transporter permease YP_062979.1 2253091 D 281090 CDS YP_062980.1 50955692 2938532 complement(2253904..2254368) 1 NC_006087.1 identified by sequence similarity; MarR family transcriptional regulator 2254368 2938532 Lxx21880 Leifsonia xyli subsp. xyli str. CTCB07 MarR family transcriptional regulator YP_062980.1 2253904 R 281090 CDS YP_062981.1 50955693 2940144 2255009..2257525 1 NC_006087.1 identified by sequence similarity; LuxR family transcriptional regulator 2257525 2940144 Lxx21890 Leifsonia xyli subsp. xyli str. CTCB07 LuxR family transcriptional regulator YP_062981.1 2255009 D 281090 CDS YP_062982.1 50955694 2939787 2261249..2262439 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2262439 2939787 Lxx21915 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062982.1 2261249 D 281090 CDS YP_062983.1 50955695 2939075 2262436..2262894 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2262894 2939075 Lxx21930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062983.1 2262436 D 281090 CDS YP_062984.1 50955696 2938363 complement(2263058..2263675) 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 2263675 2938363 Lxx21940 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_062984.1 2263058 R 281090 CDS YP_062985.1 50955697 2938731 2263733..2264767 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2264767 2938731 Lxx21960 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062985.1 2263733 D 281090 CDS YP_062986.1 50955698 2939255 2264767..2266206 1 NC_006087.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2266206 2939255 Lxx21950 Leifsonia xyli subsp. xyli str. CTCB07 amidase YP_062986.1 2264767 D 281090 CDS YP_062987.1 50955699 2938256 2266569..2268005 1 NC_006087.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2268005 argG 2938256 argG Leifsonia xyli subsp. xyli str. CTCB07 argininosuccinate synthase YP_062987.1 2266569 D 281090 CDS YP_062988.1 50955700 2940306 complement(2268018..2268977) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2268977 2940306 Lxx21980 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062988.1 2268018 R 281090 CDS YP_062989.1 50955701 2940295 2269638..2269826 1 NC_006087.1 hypothetical protein 2269826 2940295 Lxx21990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062989.1 2269638 D 281090 CDS YP_062990.1 50955702 2940452 complement(2269854..2270732) 1 NC_006087.1 identified by sequence similarity; two-component system sensor protein 2270732 cutS 2940452 cutS Leifsonia xyli subsp. xyli str. CTCB07 two-component system sensor protein YP_062990.1 2269854 R 281090 CDS YP_062991.1 50955703 2940480 complement(2270929..2271594) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 2271594 cutR 2940480 cutR Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_062991.1 2270929 R 281090 CDS YP_062992.1 50955704 2939839 2271727..2272203 1 NC_006087.1 hypothetical protein 2272203 2939839 Lxx22020 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062992.1 2271727 D 281090 CDS YP_062993.1 50955705 2940363 2273303..2274004 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP binding protein 2274004 2940363 Lxx22050 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP binding protein YP_062993.1 2273303 D 281090 CDS YP_062994.1 50955706 2938281 2274010..2275212 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2275212 2938281 Lxx22040 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062994.1 2274010 D 281090 CDS YP_062995.1 50955707 2940449 complement(2275269..2276678) 1 NC_006087.1 identified by sequence similarity; L-2,4-diaminobutyrate decarboxylase 2276678 dbdD 2940449 dbdD Leifsonia xyli subsp. xyli str. CTCB07 L-2,4-diaminobutyrate decarboxylase YP_062995.1 2275269 R 281090 CDS YP_062996.1 50955708 2939578 2277547..2278842 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2278842 2939578 Lxx22070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062996.1 2277547 D 281090 CDS YP_062997.1 50955709 2939115 2279525..2280058 1 NC_006087.1 hypothetical protein 2280058 2939115 Lxx22090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062997.1 2279525 D 281090 CDS YP_062998.1 50955710 2940576 complement(2280433..2281632) 1 NC_006087.1 identified by sequence similarity; ATP-dependent RNA helicase 2281632 deaD 2940576 deaD Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent RNA helicase YP_062998.1 2280433 R 281090 CDS YP_062999.1 50955711 2940559 2282357..2283814 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2283814 p49 2940559 p49 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_062999.1 2282357 D 281090 CDS YP_063000.1 50955712 2940530 complement(2284706..2285107) 1 NC_006087.1 hypothetical protein 2285107 2940530 Lxx22120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063000.1 2284706 R 281090 CDS YP_063001.1 50955713 2939498 complement(2285597..2286421) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2286421 2939498 Lxx22130 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063001.1 2285597 R 281090 CDS YP_063002.1 50955714 2940139 complement(2287423..2288178) 1 NC_006087.1 identified by sequence similarity; IclR family transcriptional regulator 2288178 2940139 Lxx22150 Leifsonia xyli subsp. xyli str. CTCB07 IclR family transcriptional regulator YP_063002.1 2287423 R 281090 CDS YP_063003.1 50955715 2939470 2288272..2289588 1 NC_006087.1 identified by sequence similarity; histidine ammonia-lyase 2289588 hutH 2939470 hutH Leifsonia xyli subsp. xyli str. CTCB07 histidine ammonia-lyase YP_063003.1 2288272 D 281090 CDS YP_063004.1 50955716 2940315 2292791..2293657 1 NC_006087.1 identified by sequence similarity; sugar ABC transporter solute-binding protein 2293657 2940315 Lxx22210 Leifsonia xyli subsp. xyli str. CTCB07 sugar ABC transporter solute-binding protein YP_063004.1 2292791 D 281090 CDS YP_063005.1 50955717 2939966 2293798..2295315 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 2295315 rbsA 2939966 rbsA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_063005.1 2293798 D 281090 CDS YP_063006.1 50955718 2940127 2296407..2297273 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 2297273 rbsC 2940127 rbsC Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_063006.1 2296407 D 281090 CDS YP_063007.1 50955719 2938755 complement(2297404..2297784) 1 NC_006087.1 identified by sequence similarity; DNA invertase 2297784 rin 2938755 rin Leifsonia xyli subsp. xyli str. CTCB07 DNA invertase YP_063007.1 2297404 R 281090 CDS YP_063008.1 50955720 2940510 complement(2297845..2298033) 1 NC_006087.1 hypothetical protein 2298033 2940510 Lxx22260 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063008.1 2297845 R 281090 CDS YP_063009.1 50955721 2939865 complement(2299693..2299875) 1 NC_006087.1 hypothetical protein 2299875 2939865 Lxx22270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063009.1 2299693 R 281090 CDS YP_063010.1 50955722 2938764 complement(2301247..2301825) 1 NC_006087.1 identified by sequence similarity; transposase, undefined 2301825 tnp 2938764 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, undefined YP_063010.1 2301247 R 281090 CDS YP_063011.1 50955723 2940164 2306671..2306847 1 NC_006087.1 identified by sequence similarity; transposase 2306847 2940164 Lxx22340 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_063011.1 2306671 D 281090 CDS YP_063012.1 50955724 2940395 2307233..2308111 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2308111 o375 2940395 o375 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063012.1 2307233 D 281090 CDS YP_063013.1 50955725 2938693 2308417..2308794 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2308794 2938693 Lxx22360 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063013.1 2308417 D 281090 CDS YP_063014.1 50955726 2940370 2309004..2309459 1 NC_006087.1 hypothetical protein 2309459 2940370 Lxx22370 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063014.1 2309004 D 281090 CDS YP_063015.1 50955727 2940216 complement(2310623..2310856) 1 NC_006087.1 identified by sequence similarity; transposase 2310856 2940216 Lxx22380 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_063015.1 2310623 R 281090 CDS YP_063016.1 50955728 2939385 complement(2310939..2312048) 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx2 2312048 tpase 2939385 tpase Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx2 YP_063016.1 2310939 R 281090 CDS YP_063017.1 50955729 2938696 2312601..2312822 1 NC_006087.1 identified by sequence similarity; cold shock protein 2312822 cspA 2938696 cspA Leifsonia xyli subsp. xyli str. CTCB07 cold shock protein YP_063017.1 2312601 D 281090 CDS YP_063018.1 50955730 2939918 2312822..2314072 1 NC_006087.1 identified by sequence similarity; delta fatty acid desaturase 2314072 2939918 Lxx22410 Leifsonia xyli subsp. xyli str. CTCB07 delta fatty acid desaturase YP_063018.1 2312822 D 281090 CDS YP_063019.1 50955731 2938819 2314172..2314858 1 NC_006087.1 identified by sequence similarity; transposase, undefined 2314858 tnp 2938819 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, undefined YP_063019.1 2314172 D 281090 CDS YP_063020.1 50955732 2940284 complement(2315530..2316186) 1 NC_006087.1 identified by sequence similarity; acid phosphatase 2316186 2940284 Lxx22440 Leifsonia xyli subsp. xyli str. CTCB07 acid phosphatase YP_063020.1 2315530 R 281090 CDS YP_063021.1 50955733 2938395 2317088..2318053 1 NC_006087.1 identified by sequence similarity; transposase, undefined 2318053 2938395 Lxx22450 Leifsonia xyli subsp. xyli str. CTCB07 transposase, undefined YP_063021.1 2317088 D 281090 CDS YP_063022.1 50955734 2940470 2318199..2318546 1 NC_006087.1 hypothetical protein 2318546 2940470 Lxx22460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063022.1 2318199 D 281090 CDS YP_063023.1 50955735 2938905 2318650..2319570 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2319570 dcsA 2938905 dcsA Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063023.1 2318650 D 281090 CDS YP_063024.1 50955736 2939802 complement(2319904..2320344) 1 NC_006087.1 identified by sequence similarity; stress-inducible protein 2320344 2939802 Lxx22480 Leifsonia xyli subsp. xyli str. CTCB07 stress-inducible protein YP_063024.1 2319904 R 281090 CDS YP_063025.1 50955737 2938751 complement(2320635..2321291) 1 NC_006087.1 identified by sequence similarity; two-component system regulatory protein 2321291 2938751 Lxx22490 Leifsonia xyli subsp. xyli str. CTCB07 two-component system regulatory protein YP_063025.1 2320635 R 281090 CDS YP_063026.1 50955738 2939289 2322294..2322407 1 NC_006087.1 hypothetical protein 2322407 2939289 Lxx22520 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063026.1 2322294 D 281090 CDS YP_063027.1 50955739 2939767 2322653..2323864 1 NC_006087.1 identified by sequence similarity; transposase, ISlxx5 2323864 tnp 2939767 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, ISlxx5 YP_063027.1 2322653 D 281090 CDS YP_063028.1 50955740 2939777 2324684..2325841 1 NC_006087.1 identified by sequence similarity; NADP-transhydrogenase 2325841 pntA 2939777 pntA Leifsonia xyli subsp. xyli str. CTCB07 NADP-transhydrogenase YP_063028.1 2324684 D 281090 CDS YP_063029.1 50955741 2940498 2325838..2326146 1 NC_006087.1 identified by sequence similarity; pyridine transhydrogenase 2326146 2940498 Lxx22570 Leifsonia xyli subsp. xyli str. CTCB07 pyridine transhydrogenase YP_063029.1 2325838 D 281090 CDS YP_063030.1 50955742 2938938 2326143..2327564 1 NC_006087.1 identified by sequence similarity; NADP-transhydrogenase oxidoreductase subunit beta 2327564 pntB 2938938 pntB Leifsonia xyli subsp. xyli str. CTCB07 NADP-transhydrogenase oxidoreductase subunit beta YP_063030.1 2326143 D 281090 CDS YP_063031.1 50955743 2938360 complement(2327614..2328816) 1 NC_006087.1 identified by sequence similarity; transposase, undefined 2328816 tnp 2938360 tnp Leifsonia xyli subsp. xyli str. CTCB07 transposase, undefined YP_063031.1 2327614 R 281090 CDS YP_063032.1 50955744 2940489 2329051..2330580 1 NC_006087.1 identified by sequence similarity; aldehyde dehydrogenase 2330580 aldA 2940489 aldA Leifsonia xyli subsp. xyli str. CTCB07 aldehyde dehydrogenase YP_063032.1 2329051 D 281090 CDS YP_063033.1 50955745 2938974 2330595..2331647 1 NC_006087.1 identified by sequence similarity; alcohol dehydrogenase 2331647 adh 2938974 adh Leifsonia xyli subsp. xyli str. CTCB07 alcohol dehydrogenase YP_063033.1 2330595 D 281090 CDS YP_063034.1 50955746 2938514 2331658..2332137 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2332137 2938514 Lxx22620 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063034.1 2331658 D 281090 CDS YP_063035.1 50955747 2940524 2332827..2333393 1 NC_006087.1 hypothetical protein 2333393 2940524 Lxx22630 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063035.1 2332827 D 281090 CDS YP_063036.1 50955748 2938754 complement(2333530..2334141) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2334141 2938754 Lxx22650 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063036.1 2333530 R 281090 CDS YP_063037.1 50955749 2939952 complement(2334500..2335225) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2335225 2939952 Lxx22655 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063037.1 2334500 R 281090 CDS YP_063038.1 50955750 2938273 2335510..2335734 1 NC_006087.1 identified by sequence similarity; transposase 2335734 2938273 Lxx22660 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_063038.1 2335510 D 281090 CDS YP_063039.1 50955751 2940079 2335776..2336174 1 NC_006087.1 identified by sequence similarity; transposase 2336174 2940079 Lxx22670 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_063039.1 2335776 D 281090 CDS YP_063040.1 50955752 2940501 complement(2336505..2338130) 1 NC_006087.1 identified by sequence similarity; cellulase 2338130 celA 2940501 celA Leifsonia xyli subsp. xyli str. CTCB07 cellulase YP_063040.1 2336505 R 281090 CDS YP_063041.1 50955753 2939129 complement(2339179..2339445) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2339445 2939129 Lxx22677 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063041.1 2339179 R 281090 CDS YP_063042.1 50955754 2940247 complement(2339442..2339717) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2339717 2940247 Lxx22678 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063042.1 2339442 R 281090 CDS YP_063043.1 50955755 2939971 2341541..2342350 1 NC_006087.1 identified by sequence similarity; transposase 2342350 tpase1 2939971 tpase1 Leifsonia xyli subsp. xyli str. CTCB07 transposase YP_063043.1 2341541 D 281090 CDS YP_063044.1 50955756 2939523 2342825..2343247 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2343247 2939523 Lxx22708 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063044.1 2342825 D 281090 CDS YP_063045.1 50955757 2939355 complement(2343519..2344244) 1 NC_006087.1 identified by sequence similarity; lysozyme 2344244 2939355 Lxx22710 Leifsonia xyli subsp. xyli str. CTCB07 lysozyme YP_063045.1 2343519 R 281090 CDS YP_063046.1 50955758 2939398 complement(2347435..2348349) 1 NC_006087.1 identified by sequence similarity; flavine-dependent monooxygenase 2348349 novC 2939398 novC Leifsonia xyli subsp. xyli str. CTCB07 flavine-dependent monooxygenase YP_063046.1 2347435 R 281090 CDS YP_063047.1 50955759 2939634 2348501..2348722 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2348722 2939634 Lxx22740 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063047.1 2348501 D 281090 CDS YP_063048.1 50955760 2939390 complement(2348963..2350081) 1 NC_006087.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2350081 purM 2939390 purM Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylaminoimidazole synthetase YP_063048.1 2348963 R 281090 CDS YP_063049.1 50955761 2939800 complement(2350517..2352076) 1 NC_006087.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2352076 purF 2939800 purF Leifsonia xyli subsp. xyli str. CTCB07 amidophosphoribosyltransferase YP_063049.1 2350517 R 281090 CDS YP_063050.1 50955762 2938245 complement(2352098..2352529) 1 NC_006087.1 hypothetical protein 2352529 2938245 Lxx22770 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063050.1 2352098 R 281090 CDS YP_063051.1 50955763 2940554 complement(2352552..2352908) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2352908 2940554 Lxx22790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063051.1 2352552 R 281090 CDS YP_063052.1 50955764 2939853 2352966..2354219 1 NC_006087.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2354219 purD 2939853 purD Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylamine--glycine ligase YP_063052.1 2352966 D 281090 CDS YP_063053.1 50955765 2939669 2354315..2355214 1 NC_006087.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2355214 purC 2939669 purC Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_063053.1 2354315 D 281090 CDS YP_063054.1 50955766 2938258 complement(2355304..2356842) 1 NC_006087.1 identified by sequence similarity; albicidin efflux pump 2356842 albF 2938258 albF Leifsonia xyli subsp. xyli str. CTCB07 albicidin efflux pump YP_063054.1 2355304 R 281090 CDS YP_063055.1 50955767 2939826 complement(2356872..2357456) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2357456 2939826 Lxx22820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063055.1 2356872 R 281090 CDS YP_063056.1 50955768 2938786 2357667..2358575 1 NC_006087.1 identified by sequence similarity; fragment of phage protein 2358575 2938786 Lxx22830 Leifsonia xyli subsp. xyli str. CTCB07 fragment of phage protein YP_063056.1 2357667 D 281090 CDS YP_063057.1 50955769 2939728 complement(2358585..2359322) 1 NC_006087.1 hypothetical protein 2359322 2939728 Lxx22840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063057.1 2358585 R 281090 CDS YP_063058.1 50955770 2940205 2363301..2363609 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2363609 2940205 Lxx22880 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063058.1 2363301 D 281090 CDS YP_063059.1 50955771 2938730 2363621..2364145 1 NC_006087.1 hypothetical protein 2364145 2938730 Lxx22890 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063059.1 2363621 D 281090 CDS YP_063060.1 50955772 2940463 complement(2364864..2365223) 1 NC_006087.1 hypothetical protein 2365223 2940463 Lxx22900 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063060.1 2364864 R 281090 CDS YP_063061.1 50955773 2940209 complement(2365406..2366335) 1 NC_006087.1 identified by sequence similarity; alcohol dehydrogenase 2366335 adh 2940209 adh Leifsonia xyli subsp. xyli str. CTCB07 alcohol dehydrogenase YP_063061.1 2365406 R 281090 CDS YP_063062.1 50955774 2939362 complement(2366500..2367174) 1 NC_006087.1 identified by sequence similarity; hydrolase 2367174 2939362 Lxx22920 Leifsonia xyli subsp. xyli str. CTCB07 hydrolase YP_063062.1 2366500 R 281090 CDS YP_063063.1 50955775 2939874 2368872..2369129 1 NC_006087.1 identified by sequence similarity; phosphoribosylformylglycinamidine synthase 2369129 pur 2939874 pur Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylformylglycinamidine synthase YP_063063.1 2368872 D 281090 CDS YP_063064.1 50955776 2938964 2369129..2369827 1 NC_006087.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 2369827 purQ 2938964 purQ Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylformylglycinamidine synthase I YP_063064.1 2369129 D 281090 CDS YP_063065.1 50955777 2939499 2369969..2370145 1 NC_006087.1 hypothetical protein 2370145 2939499 Lxx22980 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063065.1 2369969 D 281090 CDS YP_063066.1 50955778 2940358 2370180..2370638 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2370638 2940358 Lxx22990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063066.1 2370180 D 281090 CDS YP_063067.1 50955779 2939897 2370719..2371264 1 NC_006087.1 hypothetical protein 2371264 2939897 Lxx23000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063067.1 2370719 D 281090 CDS YP_063068.1 50955780 2939581 2374040..2375074 1 NC_006087.1 identified by sequence similarity; LacI family transcription regulator 2375074 2939581 Lxx23040 Leifsonia xyli subsp. xyli str. CTCB07 LacI family transcription regulator YP_063068.1 2374040 D 281090 CDS YP_063069.1 50955781 2939601 2375128..2376804 1 NC_006087.1 identified by sequence similarity; ABC transporter substrate binding protein 2376804 dppA 2939601 dppA Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter substrate binding protein YP_063069.1 2375128 D 281090 CDS YP_063070.1 50955782 2940427 2377682..2378608 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 2378608 dppC 2940427 dppC Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_063070.1 2377682 D 281090 CDS YP_063071.1 50955783 2939893 complement(2380216..2380647) 1 NC_006087.1 identified by sequence similarity; translational inhibitor protein 2380647 2939893 Lxx23100 Leifsonia xyli subsp. xyli str. CTCB07 translational inhibitor protein YP_063071.1 2380216 R 281090 CDS YP_063072.1 50955784 2940526 complement(2380644..2380865) 1 NC_006087.1 hypothetical protein 2380865 2940526 Lxx23110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063072.1 2380644 R 281090 CDS YP_063073.1 50955785 2940481 2380964..2381590 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 2381590 2940481 Lxx23120 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_063073.1 2380964 D 281090 CDS YP_063074.1 50955786 2938651 2381587..2381853 1 NC_006087.1 hypothetical protein 2381853 2938651 Lxx23130 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063074.1 2381587 D 281090 CDS YP_063075.1 50955787 2940500 2381911..2384229 1 NC_006087.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 2384229 purL 2940500 purL Leifsonia xyli subsp. xyli str. CTCB07 phosphoribosylformylglycinamidine synthase II YP_063075.1 2381911 D 281090 CDS YP_063076.1 50955788 2938409 complement(2384253..2385161) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2385161 2938409 Lxx23150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063076.1 2384253 R 281090 CDS YP_063077.1 50955789 2939387 complement(2385225..2385440) 1 NC_006087.1 hypothetical protein 2385440 2939387 Lxx23160 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063077.1 2385225 R 281090 CDS YP_063078.1 50955790 2940585 complement(2386160..2387365) 1 NC_006087.1 identified by sequence similarity; penicillin-binding protein 2387365 mrc 2940585 mrc Leifsonia xyli subsp. xyli str. CTCB07 penicillin-binding protein YP_063078.1 2386160 R 281090 CDS YP_063079.1 50955791 2938646 2387581..2388777 1 NC_006087.1 identified by sequence similarity; luciferase-like monooxygenase 2388777 2938646 Lxx23180 Leifsonia xyli subsp. xyli str. CTCB07 luciferase-like monooxygenase YP_063079.1 2387581 D 281090 CDS YP_063080.1 50955792 2938272 2388785..2389309 1 NC_006087.1 identified by sequence similarity; NADH-dependent FMN reductase 2389309 2938272 Lxx23200 Leifsonia xyli subsp. xyli str. CTCB07 NADH-dependent FMN reductase YP_063080.1 2388785 D 281090 CDS YP_063081.1 50955793 2939380 2389316..2389474 1 NC_006087.1 hypothetical protein 2389474 2939380 Lxx23210 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063081.1 2389316 D 281090 CDS YP_063082.1 50955794 2940053 2389513..2390778 1 NC_006087.1 identified by sequence similarity; glucosaminyltransferase 2390778 2940053 Lxx23220 Leifsonia xyli subsp. xyli str. CTCB07 glucosaminyltransferase YP_063082.1 2389513 D 281090 CDS YP_063083.1 50955795 2939807 2391090..2391386 1 NC_006087.1 hypothetical protein 2391386 2939807 Lxx23240 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063083.1 2391090 D 281090 CDS YP_063084.1 50955796 2940579 complement(2391784..2392098) 1 NC_006087.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 2392098 tyrA 2940579 tyrA Leifsonia xyli subsp. xyli str. CTCB07 chorismate mutase YP_063084.1 2391784 R 281090 CDS YP_063085.1 50955797 2940490 complement(2392116..2393447) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2393447 2940490 Lxx23260 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063085.1 2392116 R 281090 CDS YP_063086.1 50955798 2940240 complement(2393444..2394178) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP binding protein 2394178 phnL 2940240 phnL Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP binding protein YP_063086.1 2393444 R 281090 CDS YP_063087.1 50955799 2940468 2394261..2395643 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2395643 2940468 Lxx23270 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063087.1 2394261 D 281090 CDS YP_063088.1 50955800 2939323 complement(2395744..2397060) 1 NC_006087.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2397060 purA 2939323 purA Leifsonia xyli subsp. xyli str. CTCB07 adenylosuccinate synthetase YP_063088.1 2395744 R 281090 CDS YP_063089.1 50955801 2940226 2397279..2397956 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 2397956 2940226 Lxx23300 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_063089.1 2397279 D 281090 CDS YP_063090.1 50955802 2938470 2398666..2400519 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2400519 2938470 Lxx23320 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063090.1 2398666 D 281090 CDS YP_063091.1 50955803 2938494 2400566..2401408 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2401408 2938494 Lxx23330 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063091.1 2400566 D 281090 CDS YP_063092.1 50955804 2940537 complement(2401512..2402168) 1 NC_006087.1 identified by sequence similarity; tRNA/rRNA methyltransferase 2402168 spoU 2940537 spoU Leifsonia xyli subsp. xyli str. CTCB07 tRNA/rRNA methyltransferase YP_063092.1 2401512 R 281090 CDS YP_063093.1 50955805 2940428 2402297..2403100 1 NC_006087.1 identified by sequence similarity; N-acetylglucosamine metabolism protein 2403100 nagD 2940428 nagD Leifsonia xyli subsp. xyli str. CTCB07 N-acetylglucosamine metabolism protein YP_063093.1 2402297 D 281090 CDS YP_063094.1 50955806 2939797 complement(2403686..2405479) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2405479 2939797 Lxx23380 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063094.1 2403686 R 281090 CDS YP_063095.1 50955807 2939144 complement(2405539..2406087) 1 NC_006087.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2406087 pyrE 2939144 pyrE Leifsonia xyli subsp. xyli str. CTCB07 orotate phosphoribosyltransferase YP_063095.1 2405539 R 281090 CDS YP_063096.1 50955808 2940455 2406200..2407042 1 NC_006087.1 identified by sequence similarity; exodeoxyribonuclease III 2407042 xthA 2940455 xthA Leifsonia xyli subsp. xyli str. CTCB07 exodeoxyribonuclease III YP_063096.1 2406200 D 281090 CDS YP_063097.1 50955809 2939316 complement(2409847..2410017) 1 NC_006087.1 hypothetical protein 2410017 2939316 Lxx23430 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063097.1 2409847 R 281090 CDS YP_063098.1 50955810 2938275 complement(2410204..2411121) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 2411121 lacF 2938275 lacF Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_063098.1 2410204 R 281090 CDS YP_063099.1 50955811 2939783 complement(2411178..2411348) 1 NC_006087.1 hypothetical protein 2411348 2939783 Lxx23460 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063099.1 2411178 R 281090 CDS YP_063100.1 50955812 2940600 complement(2411483..2412565) 1 NC_006087.1 identified by sequence similarity; sugar ABC transporter sugar-binding protein 2412565 2940600 Lxx23470 Leifsonia xyli subsp. xyli str. CTCB07 sugar ABC transporter sugar-binding protein YP_063100.1 2411483 R 281090 CDS YP_063101.1 50955813 2939557 complement(2412781..2414046) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2414046 2939557 Lxx23480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063101.1 2412781 R 281090 CDS YP_063102.1 50955814 2940411 complement(2414224..2414736) 1 NC_006087.1 identified by sequence similarity; oxidoreductase 2414736 2940411 Lxx23490 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_063102.1 2414224 R 281090 CDS YP_063103.1 50955815 2940264 complement(2416568..2417200) 1 NC_006087.1 hypothetical protein 2417200 2940264 Lxx23530 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063103.1 2416568 R 281090 CDS YP_063104.1 50955816 2938984 complement(2419454..2420755) 1 NC_006087.1 identified by sequence similarity; ABC transporter sugar binding protein 2420755 2938984 Lxx23570 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter sugar binding protein YP_063104.1 2419454 R 281090 CDS YP_063105.1 50955817 2940290 2420899..2421930 1 NC_006087.1 identified by sequence similarity; LacI family transcription regulator 2421930 purR 2940290 purR Leifsonia xyli subsp. xyli str. CTCB07 LacI family transcription regulator YP_063105.1 2420899 D 281090 CDS YP_063106.1 50955818 2940286 2422562..2422879 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2422879 2940286 Lxx23590 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063106.1 2422562 D 281090 CDS YP_063107.1 50955819 2938462 complement(2422886..2423935) 1 NC_006087.1 identified by sequence similarity; alcohol dehydrogenase 2423935 adh2 2938462 adh2 Leifsonia xyli subsp. xyli str. CTCB07 alcohol dehydrogenase YP_063107.1 2422886 R 281090 CDS YP_063108.1 50955820 2938274 complement(2423946..2424917) 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 2424917 gntR 2938274 gntR Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_063108.1 2423946 R 281090 CDS YP_063109.1 50955821 2939626 complement(2425288..2427492) 1 NC_006087.1 identified by sequence similarity; ATP-dependent Clp protease, ATP-binding subunit 2427492 clpB 2939626 clpB Leifsonia xyli subsp. xyli str. CTCB07 ATP-dependent Clp protease, ATP-binding subunit YP_063109.1 2425288 R 281090 CDS YP_063110.1 50955822 2938383 complement(2427489..2428001) 1 NC_006087.1 hypothetical protein 2428001 2938383 Lxx23640 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063110.1 2427489 R 281090 CDS YP_063111.1 50955823 2939212 complement(2429357..2430715) 1 NC_006087.1 identified by sequence similarity; amino acid permease 2430715 proY 2939212 proY Leifsonia xyli subsp. xyli str. CTCB07 amino acid permease YP_063111.1 2429357 R 281090 CDS YP_063112.1 50955824 2939741 complement(2431075..2433114) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2433114 2939741 Lxx23680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063112.1 2431075 R 281090 CDS YP_063113.1 50955825 2940196 complement(2433111..2433779) 1 NC_006087.1 identified by sequence similarity; transport integral membrane protein 2433779 2940196 Lxx23670 Leifsonia xyli subsp. xyli str. CTCB07 transport integral membrane protein YP_063113.1 2433111 R 281090 CDS YP_063114.1 50955826 2939596 complement(2433776..2434495) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2434495 2939596 Lxx23690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063114.1 2433776 R 281090 CDS YP_063115.1 50955827 2940520 complement(2434601..2435218) 1 NC_006087.1 hypothetical protein 2435218 2940520 Lxx23700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063115.1 2434601 R 281090 CDS YP_063116.1 50955828 2940048 complement(2435229..2436413) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2436413 2940048 Lxx23710 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063116.1 2435229 R 281090 CDS YP_063117.1 50955829 2938983 complement(2436657..2437055) 1 NC_006087.1 identified by sequence similarity; signal peptidase I 2437055 lepB 2938983 lepB Leifsonia xyli subsp. xyli str. CTCB07 signal peptidase I YP_063117.1 2436657 R 281090 CDS YP_063118.1 50955830 2940521 complement(2438828..2439241) 1 NC_006087.1 identified by sequence similarity; heat shock protein 2439241 hspR 2940521 hspR Leifsonia xyli subsp. xyli str. CTCB07 heat shock protein YP_063118.1 2438828 R 281090 CDS YP_063119.1 50955831 2939514 complement(2439252..2440238) 1 NC_006087.1 identified by sequence similarity; DnaJ protein 2440238 dnaJ 2939514 dnaJ Leifsonia xyli subsp. xyli str. CTCB07 DnaJ protein YP_063119.1 2439252 R 281090 CDS YP_063120.1 50955832 2940350 complement(2440351..2441019) 1 NC_006087.1 identified by sequence similarity; molecular chaperone GrpE 2441019 grpE 2940350 grpE Leifsonia xyli subsp. xyli str. CTCB07 molecular chaperone GrpE YP_063120.1 2440351 R 281090 CDS YP_063121.1 50955833 2938358 complement(2441016..2442890) 1 NC_006087.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2442890 dnaK 2938358 dnaK Leifsonia xyli subsp. xyli str. CTCB07 molecular chaperone DnaK YP_063121.1 2441016 R 281090 CDS YP_063122.1 50955834 2940010 2443170..2443379 1 NC_006087.1 hypothetical protein 2443379 2940010 Lxx23790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063122.1 2443170 D 281090 CDS YP_063123.1 50955835 2939480 2443423..2444145 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2444145 2939480 Lxx23800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063123.1 2443423 D 281090 CDS YP_063124.1 50955836 2939344 2444335..2444892 1 NC_006087.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 2444892 idi 2939344 idi Leifsonia xyli subsp. xyli str. CTCB07 isopentenyl-diphosphate delta-isomerase YP_063124.1 2444335 D 281090 CDS YP_063125.1 50955837 2940133 complement(2445059..2445547) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2445547 2940133 Lxx23820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063125.1 2445059 R 281090 CDS YP_063126.1 50955838 2940261 complement(2445572..2446177) 1 NC_006087.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2446177 dcd 2940261 dcd Leifsonia xyli subsp. xyli str. CTCB07 deoxycytidine triphosphate deaminase YP_063126.1 2445572 R 281090 CDS YP_063127.1 50955839 2940417 complement(2448950..2449282) 1 NC_006087.1 hypothetical protein 2449282 2940417 Lxx23845 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063127.1 2448950 R 281090 CDS YP_063128.1 50955840 2940291 2449779..2450027 1 NC_006087.1 hypothetical protein 2450027 2940291 Lxx23860 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063128.1 2449779 D 281090 CDS YP_063129.1 50955841 2939308 complement(2451127..2451435) 1 NC_006087.1 identified by sequence similarity; phage repressor protein 2451435 2939308 Lxx23870 Leifsonia xyli subsp. xyli str. CTCB07 phage repressor protein YP_063129.1 2451127 R 281090 CDS YP_063130.1 50955842 2940140 2453421..2454203 1 NC_006087.1 identified by sequence similarity; prophage antirepressor protein 2454203 2940140 Lxx23880 Leifsonia xyli subsp. xyli str. CTCB07 prophage antirepressor protein YP_063130.1 2453421 D 281090 CDS YP_063131.1 50955843 2938332 2454715..2454900 1 NC_006087.1 hypothetical protein 2454900 2938332 Lxx23890 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063131.1 2454715 D 281090 CDS YP_063132.1 50955844 2940299 2455440..2456435 1 NC_006087.1 identified by sequence similarity; phage recombination protein 2456435 47 2940299 47 Leifsonia xyli subsp. xyli str. CTCB07 phage recombination protein YP_063132.1 2455440 D 281090 CDS YP_063133.1 50955845 2940567 2456456..2457241 1 NC_006087.1 identified by sequence similarity; phage recombination protein 2457241 35 2940567 35 Leifsonia xyli subsp. xyli str. CTCB07 phage recombination protein YP_063133.1 2456456 D 281090 CDS YP_063134.1 50955846 2940550 2457286..2457669 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2457669 2940550 Lxx23920 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063134.1 2457286 D 281090 CDS YP_063135.1 50955847 2938908 2457666..2458004 1 NC_006087.1 hypothetical protein 2458004 2938908 Lxx23930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063135.1 2457666 D 281090 CDS YP_063136.1 50955848 2939333 2459401..2459532 1 NC_006087.1 hypothetical protein 2459532 2939333 Lxx23950 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063136.1 2459401 D 281090 CDS YP_063137.1 50955849 2940540 2460093..2460320 1 NC_006087.1 hypothetical protein 2460320 2940540 Lxx23960 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063137.1 2460093 D 281090 CDS YP_063138.1 50955850 2939994 2460317..2460535 1 NC_006087.1 hypothetical protein 2460535 2939994 Lxx23970 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063138.1 2460317 D 281090 CDS YP_063139.1 50955851 2940569 2460796..2461392 1 NC_006087.1 hypothetical protein 2461392 2940569 Lxx23990 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063139.1 2460796 D 281090 CDS YP_063140.1 50955852 2939809 2461389..2462090 1 NC_006087.1 hypothetical protein 2462090 2939809 Lxx24000 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063140.1 2461389 D 281090 CDS YP_063141.1 50955853 2940239 2462725..2463129 1 NC_006087.1 hypothetical protein 2463129 2940239 Lxx24010 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063141.1 2462725 D 281090 CDS YP_063142.1 50955854 2938740 2463155..2464558 1 NC_006087.1 identified by sequence similarity; phage-related terminase 2464558 4 2938740 4 Leifsonia xyli subsp. xyli str. CTCB07 phage-related terminase YP_063142.1 2463155 D 281090 CDS YP_063143.1 50955855 2938899 2464619..2464714 1 NC_006087.1 hypothetical protein 2464714 2938899 Lxx24030 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063143.1 2464619 D 281090 CDS YP_063144.1 50955856 2939794 2464711..2465955 1 NC_006087.1 identified by sequence similarity; phage-related portal protein 2465955 35 2939794 35 Leifsonia xyli subsp. xyli str. CTCB07 phage-related portal protein YP_063144.1 2464711 D 281090 CDS YP_063145.1 50955857 2939569 2465993..2466658 1 NC_006087.1 identified by sequence similarity; phage-related head maturation protease 2466658 35 2939569 35 Leifsonia xyli subsp. xyli str. CTCB07 phage-related head maturation protease YP_063145.1 2465993 D 281090 CDS YP_063146.1 50955858 2940241 2466826..2468133 1 NC_006087.1 identified by sequence similarity; phage-related major capsid protein 2468133 2940241 Lxx24060 Leifsonia xyli subsp. xyli str. CTCB07 phage-related major capsid protein YP_063146.1 2466826 D 281090 CDS YP_063147.1 50955859 2939947 2468211..2468384 1 NC_006087.1 hypothetical protein 2468384 2939947 Lxx24070 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063147.1 2468211 D 281090 CDS YP_063148.1 50955860 2939622 2468415..2469017 1 NC_006087.1 hypothetical protein 2469017 2939622 Lxx24080 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063148.1 2468415 D 281090 CDS YP_063149.1 50955861 2939975 2469490..2469687 1 NC_006087.1 hypothetical protein 2469687 2939975 Lxx24100 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063149.1 2469490 D 281090 CDS YP_063150.1 50955862 2940553 2469684..2470682 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2470682 39 2940553 39 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063150.1 2469684 D 281090 CDS YP_063151.1 50955863 2940089 2470708..2471151 1 NC_006087.1 hypothetical protein 2471151 2940089 Lxx24120 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063151.1 2470708 D 281090 CDS YP_063152.1 50955864 2939623 2471152..2471451 1 NC_006087.1 hypothetical protein 2471451 2939623 Lxx24130 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063152.1 2471152 D 281090 CDS YP_063153.1 50955865 2940528 2471490..2471594 1 NC_006087.1 hypothetical protein 2471594 2940528 Lxx24140 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063153.1 2471490 D 281090 CDS YP_063154.1 50955866 2940491 2471605..2471793 1 NC_006087.1 hypothetical protein 2471793 2940491 Lxx24150 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063154.1 2471605 D 281090 CDS YP_063155.1 50955867 2938392 2471780..2473006 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2473006 2938392 Lxx24160 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063155.1 2471780 D 281090 CDS YP_063156.1 50955868 2940433 2473015..2473857 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2473857 44 2940433 44 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063156.1 2473015 D 281090 CDS YP_063157.1 50955869 2939436 2473862..2475034 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2475034 2939436 Lxx24180 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063157.1 2473862 D 281090 CDS YP_063158.1 50955870 2940102 2475239..2476249 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2476249 2940102 Lxx24185 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063158.1 2475239 D 281090 CDS YP_063159.1 50955871 2940372 2476302..2476823 1 NC_006087.1 hypothetical protein 2476823 2940372 Lxx24200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063159.1 2476302 D 281090 CDS YP_063160.1 50955872 2940543 2477533..2478477 1 NC_006087.1 identified by sequence similarity; phage-related lysozyme 2478477 lysL 2940543 lysL Leifsonia xyli subsp. xyli str. CTCB07 phage-related lysozyme YP_063160.1 2477533 D 281090 CDS YP_063161.1 50955873 2938953 complement(2478474..2478896) 1 NC_006087.1 hypothetical protein 2478896 2938953 Lxx24240 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063161.1 2478474 R 281090 CDS YP_063162.1 50955874 2939831 2480407..2481348 1 NC_006087.1 identified by sequence similarity; pat1 protein 2481348 pat1 2939831 pat1 Leifsonia xyli subsp. xyli str. CTCB07 pat1 protein YP_063162.1 2480407 D 281090 CDS YP_063163.1 50955875 2940154 complement(2481980..2482999) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2482999 2940154 Lxx24252 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063163.1 2481980 R 281090 CDS YP_063164.1 50955876 2939663 2483463..2483993 1 NC_006087.1 hypothetical protein 2483993 2939663 Lxx24254 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063164.1 2483463 D 281090 CDS YP_063165.1 50955877 2938461 2485248..2486006 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 2486006 2938461 Lxx24260 Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_063165.1 2485248 D 281090 CDS YP_063166.1 50955878 2939924 2489276..2490046 1 NC_006087.1 identified by sequence similarity; phage-related integrase/recombinase 2490046 2939924 Lxx24280 Leifsonia xyli subsp. xyli str. CTCB07 phage-related integrase/recombinase YP_063166.1 2489276 D 281090 CDS YP_063167.1 50955879 2940011 2490043..2490387 1 NC_006087.1 hypothetical protein 2490387 2940011 Lxx24290 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063167.1 2490043 D 281090 CDS YP_063168.1 50955880 2940519 2490411..2490995 1 NC_006087.1 hypothetical protein 2490995 2940519 Lxx24300 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063168.1 2490411 D 281090 CDS YP_063169.1 50955881 2939778 complement(2494500..2494763) 1 NC_006087.1 hypothetical protein 2494763 2939778 Lxx24310 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063169.1 2494500 R 281090 CDS YP_063170.1 50955882 2939273 complement(2495260..2496279) 1 NC_006087.1 identified by sequence similarity; myo-inositol dehydrogenase 2496279 2939273 Lxx24320 Leifsonia xyli subsp. xyli str. CTCB07 myo-inositol dehydrogenase YP_063170.1 2495260 R 281090 CDS YP_063171.1 50955883 2939651 complement(2496322..2497239) 1 NC_006087.1 identified by sequence similarity; myo-inositol catabolism protein 2497239 2939651 Lxx24330 Leifsonia xyli subsp. xyli str. CTCB07 myo-inositol catabolism protein YP_063171.1 2496322 R 281090 CDS YP_063172.1 50955884 2939986 complement(2501690..2502475) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2502475 2939986 Lxx24410 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063172.1 2501690 R 281090 CDS YP_063173.1 50955885 2938760 2504566..2504697 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2504697 2938760 Lxx24425 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063173.1 2504566 D 281090 CDS YP_063174.1 50955886 2940393 2504871..2504975 1 NC_006087.1 hypothetical protein 2504975 2940393 Lxx24440 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063174.1 2504871 D 281090 CDS YP_063175.1 50955887 2938276 complement(2505035..2505205) 1 NC_006087.1 hypothetical protein 2505205 2938276 Lxx24450 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063175.1 2505035 R 281090 CDS YP_063176.1 50955888 2938468 complement(2506507..2506710) 1 NC_006087.1 identified by sequence similarity; cold shock protein 2506710 cspA 2938468 cspA Leifsonia xyli subsp. xyli str. CTCB07 cold shock protein YP_063176.1 2506507 R 281090 CDS YP_063177.1 50955889 2939251 2506907..2507845 1 NC_006087.1 identified by sequence similarity; cobalt-zinc-cadmium efflux permease 2507845 czcD 2939251 czcD Leifsonia xyli subsp. xyli str. CTCB07 cobalt-zinc-cadmium efflux permease YP_063177.1 2506907 D 281090 CDS YP_063178.1 50955890 2938957 2508014..2508568 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2508568 2938957 Lxx24480 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063178.1 2508014 D 281090 CDS YP_063179.1 50955891 2938377 complement(2509160..2509645) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2509645 2938377 Lxx24490 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063179.1 2509160 R 281090 CDS YP_063180.1 50955892 2939394 2510711..2511055 1 NC_006087.1 hypothetical protein 2511055 2939394 Lxx24510 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063180.1 2510711 D 281090 CDS YP_063181.1 50955893 2940447 complement(2511079..2511450) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2511450 2940447 Lxx24520 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063181.1 2511079 R 281090 CDS YP_063182.1 50955894 2939419 complement(2512195..2514345) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2514345 2939419 Lxx24530 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063182.1 2512195 R 281090 CDS YP_063183.1 50955895 2939894 2514677..2515267 1 NC_006087.1 identified by sequence similarity; TetR family transcriptional regulator 2515267 2939894 Lxx24540 Leifsonia xyli subsp. xyli str. CTCB07 TetR family transcriptional regulator YP_063183.1 2514677 D 281090 CDS YP_063184.1 50955896 2940418 complement(2515313..2515717) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2515717 2940418 Lxx24550 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063184.1 2515313 R 281090 CDS YP_063185.1 50955897 2939336 complement(2520585..2521061) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2521061 2939336 Lxx24630 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063185.1 2520585 R 281090 CDS YP_063186.1 50955898 2938958 2521119..2522540 1 NC_006087.1 identified by sequence similarity; arginine/ornithine antiporter 2522540 2938958 Lxx24640 Leifsonia xyli subsp. xyli str. CTCB07 arginine/ornithine antiporter YP_063186.1 2521119 D 281090 CDS YP_063187.1 50955899 2938291 complement(2522626..2523543) 1 NC_006087.1 identified by sequence similarity; LysR family transcriptional regulator 2523543 lysR 2938291 lysR Leifsonia xyli subsp. xyli str. CTCB07 LysR family transcriptional regulator YP_063187.1 2522626 R 281090 CDS YP_063188.1 50955900 2939297 2525108..2525470 1 NC_006087.1 hypothetical protein 2525470 2939297 Lxx24680 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063188.1 2525108 D 281090 CDS YP_063189.1 50955901 2940235 2525543..2526256 1 NC_006087.1 hypothetical protein 2526256 2940235 Lxx24690 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063189.1 2525543 D 281090 CDS YP_063190.1 50955902 2939112 complement(2526335..2526652) 1 NC_006087.1 hypothetical protein 2526652 2939112 Lxx24700 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063190.1 2526335 R 281090 CDS YP_063191.1 50955903 2938939 complement(2526787..2527158) 1 NC_006087.1 hypothetical protein 2527158 2938939 Lxx24710 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063191.1 2526787 R 281090 CDS YP_063192.1 50955904 2939668 2527597..2528397 1 NC_006087.1 identified by sequence similarity; oxidoreductase 2528397 2939668 Lxx24720 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_063192.1 2527597 D 281090 CDS YP_063193.1 50955905 2940142 2528394..2529413 1 NC_006087.1 identified by sequence similarity; oxidoreductase 2529413 2940142 Lxx24740 Leifsonia xyli subsp. xyli str. CTCB07 oxidoreductase YP_063193.1 2528394 D 281090 CDS YP_063194.1 50955906 2939887 2529645..2530214 1 NC_006087.1 hypothetical protein 2530214 2939887 Lxx24760 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063194.1 2529645 D 281090 CDS YP_063195.1 50955907 2939943 complement(2530245..2530988) 1 NC_006087.1 hypothetical protein 2530988 2939943 Lxx24770 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063195.1 2530245 R 281090 CDS YP_063196.1 50955908 2939662 complement(2531001..2531843) 1 NC_006087.1 hypothetical protein 2531843 2939662 Lxx24780 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063196.1 2531001 R 281090 CDS YP_063197.1 50955909 2940346 complement(2532111..2532287) 1 NC_006087.1 hypothetical protein 2532287 2940346 Lxx24790 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063197.1 2532111 R 281090 CDS YP_063198.1 50955910 2940273 complement(2532776..2533051) 1 NC_006087.1 hypothetical protein 2533051 2940273 Lxx24800 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063198.1 2532776 R 281090 CDS YP_063199.1 50955911 2940377 complement(2533048..2533815) 1 NC_006087.1 identified by sequence similarity; integrase 2533815 2940377 Lxx24805 Leifsonia xyli subsp. xyli str. CTCB07 integrase YP_063199.1 2533048 R 281090 CDS YP_063200.1 50955912 2939320 complement(2533819..2533962) 1 NC_006087.1 hypothetical protein 2533962 2939320 Lxx24810 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063200.1 2533819 R 281090 CDS YP_063201.1 50955913 2939528 2534040..2534264 1 NC_006087.1 hypothetical protein 2534264 2939528 Lxx24820 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063201.1 2534040 D 281090 CDS YP_063202.1 50955914 2939914 complement(2534807..2535262) 1 NC_006087.1 hypothetical protein 2535262 2939914 Lxx24830 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063202.1 2534807 R 281090 CDS YP_063203.1 50955915 2939850 2536120..2536572 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2536572 2939850 Lxx24840 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063203.1 2536120 D 281090 CDS YP_063204.1 50955916 2940575 2537177..2537827 1 NC_006087.1 identified by sequence similarity; heme oxygenase 2537827 hmuO 2940575 hmuO Leifsonia xyli subsp. xyli str. CTCB07 heme oxygenase YP_063204.1 2537177 D 281090 CDS YP_063205.1 50955917 2940456 complement(2537843..2538196) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2538196 2940456 Lxx24870 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063205.1 2537843 R 281090 CDS YP_063206.1 50955918 2939992 complement(2541873..2544797) 1 NC_006087.1 identified by sequence similarity; serine/threonine kinase 2544797 pknK 2939992 pknK Leifsonia xyli subsp. xyli str. CTCB07 serine/threonine kinase YP_063206.1 2541873 R 281090 CDS YP_063207.1 50955919 2940376 complement(2544794..2545213) 1 NC_006087.1 hypothetical protein 2545213 2940376 Lxx24930 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063207.1 2544794 R 281090 CDS YP_063208.1 50955920 2939946 2548704..2549744 1 NC_006087.1 hypothetical protein 2549744 2939946 Lxx24950 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063208.1 2548704 D 281090 CDS YP_063209.1 50955921 2939313 complement(2549698..2551710) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2551710 2939313 Lxx24960 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063209.1 2549698 R 281090 CDS YP_063210.1 50955922 2939257 complement(2551842..2552126) 1 NC_006087.1 identified by sequence similarity; DNA-binding HU protein 2552126 2939257 Lxx24970 Leifsonia xyli subsp. xyli str. CTCB07 DNA-binding HU protein YP_063210.1 2551842 R 281090 CDS YP_063211.1 50955923 2940301 complement(2552342..2552647) 1 NC_006087.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 2552647 rpsN 2940301 rpsN Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S14 YP_063211.1 2552342 R 281090 CDS YP_063212.1 50955924 2939804 complement(2552650..2552817) 1 NC_006087.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2552817 rpmG 2939804 rpmG Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L33 YP_063212.1 2552650 R 281090 CDS YP_063213.1 50955925 2940548 complement(2552817..2553053) 1 NC_006087.1 required for 70S ribosome assembly; 50S ribosomal protein L28 2553053 rpmB 2940548 rpmB Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L28 YP_063213.1 2552817 R 281090 CDS YP_063214.1 50955926 2940244 complement(2553192..2553608) 1 NC_006087.1 identified by sequence similarity; ferric uptake regulator family protein 2553608 fur 2940244 fur Leifsonia xyli subsp. xyli str. CTCB07 ferric uptake regulator family protein YP_063214.1 2553192 R 281090 CDS YP_063215.1 50955927 2940040 complement(2553618..2554475) 1 NC_006087.1 identified by sequence similarity; ABC transporter permease 2554475 znuB 2940040 znuB Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter permease YP_063215.1 2553618 R 281090 CDS YP_063216.1 50955928 2940045 complement(2554472..2555311) 1 NC_006087.1 identified by sequence similarity; ABC transporter ATP-binding protein 2555311 fhuC 2940045 fhuC Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter ATP-binding protein YP_063216.1 2554472 R 281090 CDS YP_063217.1 50955929 2939613 complement(2555329..2556225) 1 NC_006087.1 identified by sequence similarity; ABC transporter solute binding protein 2556225 2939613 Lxx25040 Leifsonia xyli subsp. xyli str. CTCB07 ABC transporter solute binding protein YP_063217.1 2555329 R 281090 CDS YP_063218.1 50955930 2940497 complement(2556312..2557670) 1 NC_006087.1 identified by sequence similarity; branched-chain alpha-keto acid dehydrogenase subunit E2 2557670 pdhC 2940497 pdhC Leifsonia xyli subsp. xyli str. CTCB07 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_063218.1 2556312 R 281090 CDS YP_063219.1 50955931 2940400 complement(2557714..2558727) 1 NC_006087.1 identified by sequence similarity; pyruvate dehydrogenase E1 component subunit beta 2558727 pdhB 2940400 pdhB Leifsonia xyli subsp. xyli str. CTCB07 pyruvate dehydrogenase E1 component subunit beta YP_063219.1 2557714 R 281090 CDS YP_063220.1 50955932 2940330 complement(2558877..2560016) 1 NC_006087.1 identified by sequence similarity; pyruvate dehydrogenase E1 component subunit alpha 2560016 pdhA 2940330 pdhA Leifsonia xyli subsp. xyli str. CTCB07 pyruvate dehydrogenase E1 component subunit alpha YP_063220.1 2558877 R 281090 CDS YP_063221.1 50955933 2939350 complement(2560021..2561106) 1 NC_006087.1 identified by sequence similarity; aminotransferase 2561106 hisC2 2939350 hisC2 Leifsonia xyli subsp. xyli str. CTCB07 aminotransferase YP_063221.1 2560021 R 281090 CDS YP_063222.1 50955934 2938513 2561298..2561684 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2561684 2938513 Lxx25090 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063222.1 2561298 D 281090 CDS YP_063223.1 50955935 2940412 2561774..2563153 1 NC_006087.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2563153 purB 2940412 purB Leifsonia xyli subsp. xyli str. CTCB07 adenylosuccinate lyase YP_063223.1 2561774 D 281090 CDS YP_063224.1 50955936 2938806 complement(2563181..2563648) 1 NC_006087.1 hypothetical protein 2563648 2938806 Lxx25110 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063224.1 2563181 R 281090 CDS YP_063225.1 50955937 2938732 2564642..2565307 1 NC_006087.1 identified by sequence similarity; GntR family transcriptional regulator 2565307 gntR 2938732 gntR Leifsonia xyli subsp. xyli str. CTCB07 GntR family transcriptional regulator YP_063225.1 2564642 D 281090 CDS YP_063226.1 50955938 2939401 complement(2565710..2567083) 1 NC_006087.1 identified by sequence similarity; replicative DNA helicase 2567083 dnaB 2939401 dnaB Leifsonia xyli subsp. xyli str. CTCB07 replicative DNA helicase YP_063226.1 2565710 R 281090 CDS YP_063227.1 50955939 2940487 complement(2567607..2568059) 1 NC_006087.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2568059 rplI 2940487 rplI Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L9 YP_063227.1 2567607 R 281090 CDS YP_063228.1 50955940 2939327 complement(2568071..2568334) 1 NC_006087.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2568334 rpsR 2939327 rpsR Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S18 YP_063228.1 2568071 R 281090 CDS YP_063229.1 50955941 2939931 complement(2568398..2568910) 1 NC_006087.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 2568910 ssb 2939931 ssb Leifsonia xyli subsp. xyli str. CTCB07 single-stranded DNA-binding protein YP_063229.1 2568398 R 281090 CDS YP_063230.1 50955942 2939089 complement(2568915..2569301) 1 NC_006087.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2569301 rpsF 2939089 rpsF Leifsonia xyli subsp. xyli str. CTCB07 30S ribosomal protein S6 YP_063230.1 2568915 R 281090 CDS YP_063231.1 50955943 2938304 complement(2569602..2571038) 1 NC_006087.1 identified by sequence similarity; tRNA nucleotidyltransferase; poly(A) polymerase 2571038 pcnB 2938304 pcnB Leifsonia xyli subsp. xyli str. CTCB07 poly(A) polymerase YP_063231.1 2569602 R 281090 CDS YP_063232.1 50955944 2939328 2571136..2573382 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2573382 2939328 Lxx25200 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063232.1 2571136 D 281090 CDS YP_063233.1 50955945 2939301 2573375..2574991 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2574991 mviN 2939301 mviN Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063233.1 2573375 D 281090 CDS YP_063234.1 50955946 2940341 2575068..2576054 1 NC_006087.1 identified by sequence similarity; thioredoxin-disulfide reductase 2576054 trxB 2940341 trxB Leifsonia xyli subsp. xyli str. CTCB07 thioredoxin-disulfide reductase YP_063234.1 2575068 D 281090 CDS YP_063235.1 50955947 2939424 2576068..2576394 1 NC_006087.1 identified by sequence similarity; thioredoxin 2576394 trxA 2939424 trxA Leifsonia xyli subsp. xyli str. CTCB07 thioredoxin YP_063235.1 2576068 D 281090 CDS YP_063236.1 50955948 2939153 2576529..2577851 1 NC_006087.1 identified by sequence similarity; valine-pyruvate aminotransferase 2577851 avtA 2939153 avtA Leifsonia xyli subsp. xyli str. CTCB07 valine-pyruvate aminotransferase YP_063236.1 2576529 D 281090 CDS YP_063237.1 50955949 2939325 complement(2578843..2579802) 1 NC_006087.1 identified by sequence similarity; chromosome partitioning protein 2579802 parB 2939325 parB Leifsonia xyli subsp. xyli str. CTCB07 chromosome partitioning protein YP_063237.1 2578843 R 281090 CDS YP_063238.1 50955950 2939293 complement(2579802..2580590) 1 NC_006087.1 identified by sequence similarity; chromosome partitioning protein 2580590 parA 2939293 parA Leifsonia xyli subsp. xyli str. CTCB07 chromosome partitioning protein YP_063238.1 2579802 R 281090 CDS YP_063239.1 50955951 2938479 complement(2580885..2581514) 1 NC_006087.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 2581514 gidB 2938479 gidB Leifsonia xyli subsp. xyli str. CTCB07 16S rRNA methyltransferase GidB YP_063239.1 2580885 R 281090 CDS YP_063240.1 50955952 2940398 complement(2581529..2582038) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2582038 2940398 Lxx25260 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063240.1 2581529 R 281090 CDS YP_063241.1 50955953 2939696 complement(2582083..2583057) 1 NC_006087.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 2583057 yidC 2939696 yidC Leifsonia xyli subsp. xyli str. CTCB07 inner membrane protein translocase component YidC YP_063241.1 2582083 R 281090 CDS YP_063242.1 50955954 2940557 complement(2583068..2583325) 1 NC_006087.1 identified by sequence similarity; hypothetical protein 2583325 2940557 Lxx25275 Leifsonia xyli subsp. xyli str. CTCB07 hypothetical protein YP_063242.1 2583068 R 281090 CDS YP_063243.1 50955955 2940060 complement(2583799..2583936) 1 NC_006087.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 2583936 rpmH 2940060 rpmH Leifsonia xyli subsp. xyli str. CTCB07 50S ribosomal protein L34 YP_063243.1 2583799 R 281090 CDS