-- dump date 20140619_130710 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 281090000001 SEQ_END SEQ_END NC_006087.1 2584158 2584158 DR NC_006087.1; contig end 2584158..2584158 Leifsonia xyli subsp. xyli str. CTCB07 YP_061214.1 CDS dnaA NC_006087.1 225 1646 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 225..1646 Leifsonia xyli subsp. xyli str. CTCB07 2938735 YP_061215.1 CDS dnaN NC_006087.1 2083 3228 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2083..3228 Leifsonia xyli subsp. xyli str. CTCB07 2938305 YP_061216.1 CDS gnd NC_006087.1 3266 4153 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 3266..4153 Leifsonia xyli subsp. xyli str. CTCB07 2940065 YP_061217.1 CDS recF NC_006087.1 4160 5317 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4160..5317 Leifsonia xyli subsp. xyli str. CTCB07 2938609 YP_061218.1 CDS Lxx00050 NC_006087.1 5314 5790 D identified by sequence similarity; hypothetical protein 5314..5790 Leifsonia xyli subsp. xyli str. CTCB07 2939456 YP_061219.1 CDS gyrB NC_006087.1 5914 7905 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 5914..7905 Leifsonia xyli subsp. xyli str. CTCB07 2939052 YP_061220.1 CDS gyrA NC_006087.1 7949 10525 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 7949..10525 Leifsonia xyli subsp. xyli str. CTCB07 2938465 YP_061221.1 CDS Lxx00080 NC_006087.1 10515 10928 D identified by sequence similarity; hypothetical protein 10515..10928 Leifsonia xyli subsp. xyli str. CTCB07 2938431 YP_061222.1 CDS mutM NC_006087.1 13624 14487 R identified by sequence similarity; formamidopyrimidine-DNA glycosylase complement(13624..14487) Leifsonia xyli subsp. xyli str. CTCB07 2940265 YP_061223.1 CDS Lxx00130 NC_006087.1 14528 14959 D identified by sequence similarity; MutT-like domain-containing protein 14528..14959 Leifsonia xyli subsp. xyli str. CTCB07 2940170 YP_061224.1 CDS Lxx00150 NC_006087.1 15163 15465 R hypothetical protein complement(15163..15465) Leifsonia xyli subsp. xyli str. CTCB07 2939899 YP_061225.1 CDS ppiB NC_006087.1 15843 16382 D identified by sequence similarity; peptidyl-prolyl cis-trans isomerase 15843..16382 Leifsonia xyli subsp. xyli str. CTCB07 2938629 YP_061226.1 CDS yggP NC_006087.1 16406 17263 D identified by sequence similarity; rhomboid family membrane protein 16406..17263 Leifsonia xyli subsp. xyli str. CTCB07 2939416 YP_061227.1 CDS whiP NC_006087.1 17482 17742 R identified by sequence similarity; hypothetical protein complement(17482..17742) Leifsonia xyli subsp. xyli str. CTCB07 2939477 YP_061228.1 CDS Lxx00190 NC_006087.1 17919 18668 D identified by sequence similarity; hypothetical protein 17919..18668 Leifsonia xyli subsp. xyli str. CTCB07 2938756 YP_061229.1 CDS trpG NC_006087.1 18828 19466 D identified by sequence similarity; anthranilate synthase component II 18828..19466 Leifsonia xyli subsp. xyli str. CTCB07 2939427 YP_061230.1 CDS pknB NC_006087.1 19497 21194 R identified by sequence similarity; serine/threonine kinase complement(19497..21194) Leifsonia xyli subsp. xyli str. CTCB07 2938776 YP_061231.1 CDS pknA NC_006087.1 21267 22988 R identified by sequence similarity; serine/threonine kinase complement(21267..22988) Leifsonia xyli subsp. xyli str. CTCB07 2939031 YP_061232.1 CDS Lxx00230 NC_006087.1 22985 24406 R identified by sequence similarity; penicillin binding protein transpeptidase domain-containing protein complement(22985..24406) Leifsonia xyli subsp. xyli str. CTCB07 2939166 YP_061233.1 CDS ftsW NC_006087.1 24441 25820 R identified by sequence similarity; cell division membrane protein complement(24441..25820) Leifsonia xyli subsp. xyli str. CTCB07 2940302 YP_061234.1 CDS Lxx00250 NC_006087.1 25822 27066 R identified by sequence similarity; protein phosphatase complement(25822..27066) Leifsonia xyli subsp. xyli str. CTCB07 2939180 YP_061235.1 CDS Lxx00260 NC_006087.1 27070 27627 R identified by sequence similarity; secreted protein complement(27070..27627) Leifsonia xyli subsp. xyli str. CTCB07 2939976 YP_061236.1 CDS Lxx00270 NC_006087.1 27624 28337 R identified by sequence similarity; hypothetical protein complement(27624..28337) Leifsonia xyli subsp. xyli str. CTCB07 2939158 YP_061237.1 CDS Lxx00290 NC_006087.1 29067 29405 D identified by sequence similarity; hypothetical protein 29067..29405 Leifsonia xyli subsp. xyli str. CTCB07 2938597 YP_061238.1 CDS aroE NC_006087.1 30026 30745 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(30026..30745) Leifsonia xyli subsp. xyli str. CTCB07 2938943 YP_061239.1 CDS Lxx00320 NC_006087.1 31125 32672 D identified by sequence similarity; multiple sugar transporter 31125..32672 Leifsonia xyli subsp. xyli str. CTCB07 2938340 YP_061240.1 CDS araH NC_006087.1 32675 34024 D identified by sequence similarity; L-arabinose ABC transporter permease 32675..34024 Leifsonia xyli subsp. xyli str. CTCB07 2939978 YP_061241.1 CDS Lxx00340 NC_006087.1 34092 35162 D identified by sequence similarity; multiple sugar-binding periplasmic receptor 34092..35162 Leifsonia xyli subsp. xyli str. CTCB07 2939072 YP_061242.1 CDS Lxx00370 NC_006087.1 37296 38450 D identified by sequence similarity; DNA-binding helix-turn-helix protein 37296..38450 Leifsonia xyli subsp. xyli str. CTCB07 2938998 YP_061243.1 CDS Lxx00380 NC_006087.1 39767 40810 D identified by sequence similarity; secreted hydrolase 39767..40810 Leifsonia xyli subsp. xyli str. CTCB07 2938464 YP_061244.1 CDS 5 NC_006087.1 41320 41652 R identified by sequence similarity; hypothetical protein complement(41320..41652) Leifsonia xyli subsp. xyli str. CTCB07 2938898 YP_061245.1 CDS lysL NC_006087.1 41660 42607 R identified by sequence similarity; phage-related lysozyme complement(41660..42607) Leifsonia xyli subsp. xyli str. CTCB07 2940542 YP_061246.1 CDS Lxx00410 NC_006087.1 43317 43583 R hypothetical protein complement(43317..43583) Leifsonia xyli subsp. xyli str. CTCB07 2938707 YP_061247.1 CDS tnp NC_006087.1 43717 44178 D identified by sequence similarity; transposase, ISlxx4 43717..44178 Leifsonia xyli subsp. xyli str. CTCB07 2938725 YP_061248.1 CDS mut NC_006087.1 46023 46373 D identified by sequence similarity; MutT-like domain-containing protein 46023..46373 Leifsonia xyli subsp. xyli str. CTCB07 2939063 YP_061249.1 CDS Lxx00450 NC_006087.1 46604 47908 R identified by sequence similarity; phage-related integrase complement(46604..47908) Leifsonia xyli subsp. xyli str. CTCB07 2939790 YP_061250.1 CDS Lxx00460 NC_006087.1 48277 48990 R identified by sequence similarity; GntR family transcriptional regulator complement(48277..48990) Leifsonia xyli subsp. xyli str. CTCB07 2938920 YP_061251.1 CDS Lxx00470 NC_006087.1 49110 49751 D identified by sequence similarity; GntR family transcriptional regulator 49110..49751 Leifsonia xyli subsp. xyli str. CTCB07 2939277 YP_061252.1 CDS Lxx00490 NC_006087.1 49911 51044 R identified by sequence similarity; serine protease complement(49911..51044) Leifsonia xyli subsp. xyli str. CTCB07 2939524 YP_061253.1 CDS Lxx00500 NC_006087.1 51177 51731 R identified by sequence similarity; hypothetical protein complement(51177..51731) Leifsonia xyli subsp. xyli str. CTCB07 2939334 YP_061254.1 CDS Lxx00510 NC_006087.1 51946 53229 D identified by sequence similarity; ROK family transcriptional regulator 51946..53229 Leifsonia xyli subsp. xyli str. CTCB07 2938475 YP_061255.1 CDS Lxx00540 NC_006087.1 54720 55652 D identified by sequence similarity; ABC transporter permease 54720..55652 Leifsonia xyli subsp. xyli str. CTCB07 2939101 YP_061256.1 CDS Lxx00550 NC_006087.1 55649 56485 D identified by sequence similarity; ABC transporter permease 55649..56485 Leifsonia xyli subsp. xyli str. CTCB07 2939322 YP_061257.1 CDS tnp NC_006087.1 57113 58324 D identified by sequence similarity; transposase, ISlxx5 57113..58324 Leifsonia xyli subsp. xyli str. CTCB07 2939208 YP_061258.1 CDS Lxx00600 NC_006087.1 60277 60648 D hypothetical protein 60277..60648 Leifsonia xyli subsp. xyli str. CTCB07 2938700 YP_061259.1 CDS kdgK NC_006087.1 61552 62598 D identified by sequence similarity; 2-dehydro-3-deoxygluconokinase 61552..62598 Leifsonia xyli subsp. xyli str. CTCB07 2939285 YP_061260.1 CDS Lxx00620 NC_006087.1 62595 63383 D identified by sequence similarity; IclR family transcriptional regulator 62595..63383 Leifsonia xyli subsp. xyli str. CTCB07 2938328 YP_061261.1 CDS Lxx00630 NC_006087.1 63395 63799 D identified by sequence similarity; protein synthesis inhibitor 63395..63799 Leifsonia xyli subsp. xyli str. CTCB07 2938600 YP_061262.1 CDS Lxx00640 NC_006087.1 65549 66595 D identified by sequence similarity; oxidoreductase 65549..66595 Leifsonia xyli subsp. xyli str. CTCB07 2940584 YP_061263.1 CDS Lxx00660 NC_006087.1 66911 67027 D hypothetical protein 66911..67027 Leifsonia xyli subsp. xyli str. CTCB07 2938795 YP_061264.1 CDS Lxx00670 NC_006087.1 67113 67583 D hypothetical protein 67113..67583 Leifsonia xyli subsp. xyli str. CTCB07 2939610 YP_061265.1 CDS crcB NC_006087.1 67552 67965 R identified by sequence similarity; hypothetical protein complement(67552..67965) Leifsonia xyli subsp. xyli str. CTCB07 2938927 YP_061266.1 CDS crcB NC_006087.1 67962 68399 R identified by sequence similarity; hypothetical protein complement(67962..68399) Leifsonia xyli subsp. xyli str. CTCB07 2940218 YP_061267.1 CDS Lxx00710 NC_006087.1 68492 69034 R hypothetical protein complement(68492..69034) Leifsonia xyli subsp. xyli str. CTCB07 2939182 YP_061268.1 CDS Lxx00700 NC_006087.1 69024 69770 D identified by sequence similarity; hypothetical protein 69024..69770 Leifsonia xyli subsp. xyli str. CTCB07 2939352 YP_061269.1 CDS Lxx00730 NC_006087.1 69767 70813 D identified by sequence similarity; hypothetical protein 69767..70813 Leifsonia xyli subsp. xyli str. CTCB07 2940296 YP_061270.1 CDS Lxx00740 NC_006087.1 70810 71991 R hypothetical protein complement(70810..71991) Leifsonia xyli subsp. xyli str. CTCB07 2938430 YP_061271.1 CDS Lxx00750 NC_006087.1 72235 73395 R identified by sequence similarity; two-component system sensor protein complement(72235..73395) Leifsonia xyli subsp. xyli str. CTCB07 2939816 YP_061272.1 CDS Lxx00760 NC_006087.1 73920 74543 R identified by sequence similarity; two-component system response regulator complement(73920..74543) Leifsonia xyli subsp. xyli str. CTCB07 2939134 YP_061273.1 CDS mtlD NC_006087.1 75783 76934 R identified by sequence similarity; mannitol-1-phosphate 5-dehydrogenase complement(75783..76934) Leifsonia xyli subsp. xyli str. CTCB07 2938322 YP_061274.1 CDS Lxx00810 NC_006087.1 76947 77384 R identified by sequence similarity; PTS system, mannitol-specific enzyme II, A component complement(76947..77384) Leifsonia xyli subsp. xyli str. CTCB07 2940145 YP_061275.1 CDS EIIBC-Mtl NC_006087.1 77381 78895 R identified by sequence similarity; PTS system, mannitol-specific IIBC component complement(77381..78895) Leifsonia xyli subsp. xyli str. CTCB07 2938467 YP_061276.1 CDS ptsI NC_006087.1 78892 80538 R identified by sequence similarity; PTS system, enzyme I complement(78892..80538) Leifsonia xyli subsp. xyli str. CTCB07 2939047 YP_061277.1 CDS ptsH NC_006087.1 80598 80864 R identified by sequence similarity; phosphocarrier protein HPr complement(80598..80864) Leifsonia xyli subsp. xyli str. CTCB07 2938992 YP_061278.1 CDS Lxx00850 NC_006087.1 80857 81213 R identified by sequence similarity; PTS system, IIB component complement(80857..81213) Leifsonia xyli subsp. xyli str. CTCB07 2939018 YP_061279.1 CDS Lxx00880 NC_006087.1 84065 85180 D identified by sequence similarity; acetyltransferase 84065..85180 Leifsonia xyli subsp. xyli str. CTCB07 2938284 YP_061280.1 CDS Lxx00900 NC_006087.1 85621 87519 D identified by sequence similarity; BigG family transcription antiterminator 85621..87519 Leifsonia xyli subsp. xyli str. CTCB07 2938833 YP_061281.1 CDS Lxx00910 NC_006087.1 87549 88247 R identified by sequence similarity; HAD superfamily hydrolase complement(87549..88247) Leifsonia xyli subsp. xyli str. CTCB07 2938881 YP_061282.1 CDS Lxx00920 NC_006087.1 88285 88704 R hypothetical protein complement(88285..88704) Leifsonia xyli subsp. xyli str. CTCB07 2940077 YP_061283.1 CDS Lxx00930 NC_006087.1 88704 89399 R identified by sequence similarity; hypothetical protein complement(88704..89399) Leifsonia xyli subsp. xyli str. CTCB07 2938640 YP_061284.1 CDS Lxx00940 NC_006087.1 89414 90487 D identified by sequence similarity; secreted protein 89414..90487 Leifsonia xyli subsp. xyli str. CTCB07 2939145 YP_061285.1 CDS Lxx00950 NC_006087.1 90531 91160 R hypothetical protein complement(90531..91160) Leifsonia xyli subsp. xyli str. CTCB07 2940465 YP_061286.1 CDS dinF NC_006087.1 92167 93552 R identified by sequence similarity; DNA-damage-inducible protein F complement(92167..93552) Leifsonia xyli subsp. xyli str. CTCB07 2938313 YP_061287.1 CDS Lxx00970 NC_006087.1 93566 94297 D hypothetical protein 93566..94297 Leifsonia xyli subsp. xyli str. CTCB07 2938677 YP_061288.1 CDS Lxx00980 NC_006087.1 94294 94611 D hypothetical protein 94294..94611 Leifsonia xyli subsp. xyli str. CTCB07 2940236 YP_061289.1 CDS Lxx00990 NC_006087.1 95288 95512 D hypothetical protein 95288..95512 Leifsonia xyli subsp. xyli str. CTCB07 2939029 YP_061290.1 CDS Lxx01000 NC_006087.1 95597 96193 D hypothetical protein 95597..96193 Leifsonia xyli subsp. xyli str. CTCB07 2939049 YP_061291.1 CDS Lxx01010 NC_006087.1 96210 98165 D identified by sequence similarity; metallopeptidase 96210..98165 Leifsonia xyli subsp. xyli str. CTCB07 2938989 YP_061292.1 CDS Lxx01020 NC_006087.1 98366 99202 D identified by sequence similarity; beta-lactamase-like protein 98366..99202 Leifsonia xyli subsp. xyli str. CTCB07 2940410 YP_061293.1 CDS glyS NC_006087.1 99376 100767 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(99376..100767) Leifsonia xyli subsp. xyli str. CTCB07 2939490 YP_061294.1 CDS hemA NC_006087.1 100844 102142 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(100844..102142) Leifsonia xyli subsp. xyli str. CTCB07 2938311 YP_061295.1 CDS hemE NC_006087.1 102252 103385 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 102252..103385 Leifsonia xyli subsp. xyli str. CTCB07 2940152 YP_061296.1 CDS hemG NC_006087.1 103382 105214 D identified by sequence similarity; protoporphyrinogen oxidase 103382..105214 Leifsonia xyli subsp. xyli str. CTCB07 2939103 YP_061297.1 CDS Lxx01080 NC_006087.1 105650 105865 D hypothetical protein 105650..105865 Leifsonia xyli subsp. xyli str. CTCB07 2938592 YP_061298.1 CDS hemH NC_006087.1 106682 107851 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 106682..107851 Leifsonia xyli subsp. xyli str. CTCB07 2938895 YP_061299.1 CDS hemC NC_006087.1 107848 108837 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 107848..108837 Leifsonia xyli subsp. xyli str. CTCB07 2938373 YP_061300.1 CDS hemD NC_006087.1 108834 109616 D identified by sequence similarity; uroporphyrinogen-III synthase 108834..109616 Leifsonia xyli subsp. xyli str. CTCB07 2939329 YP_061301.1 CDS hemB NC_006087.1 109644 110624 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 109644..110624 Leifsonia xyli subsp. xyli str. CTCB07 2939123 YP_061302.1 CDS hemL NC_006087.1 110645 111988 D identified by sequence similarity; glutamate-1-semialdehyde 2,1-aminomutase 110645..111988 Leifsonia xyli subsp. xyli str. CTCB07 2940479 YP_061303.1 CDS Lxx01140 NC_006087.1 112143 112751 D hypothetical protein 112143..112751 Leifsonia xyli subsp. xyli str. CTCB07 2938246 YP_061304.1 CDS Lxx01150 NC_006087.1 113470 114183 D hypothetical protein 113470..114183 Leifsonia xyli subsp. xyli str. CTCB07 2939658 YP_061305.1 CDS Lxx01160 NC_006087.1 114224 114649 D hypothetical protein 114224..114649 Leifsonia xyli subsp. xyli str. CTCB07 2938995 YP_061306.1 CDS Lxx01180 NC_006087.1 116688 117068 R identified by sequence similarity; hypothetical protein complement(116688..117068) Leifsonia xyli subsp. xyli str. CTCB07 2939788 YP_061307.1 CDS adhT NC_006087.1 117132 118154 R identified by sequence similarity; alcohol dehydrogenase complement(117132..118154) Leifsonia xyli subsp. xyli str. CTCB07 2939330 YP_061308.1 CDS Lxx01200 NC_006087.1 118621 119262 D identified by sequence similarity; hypothetical protein 118621..119262 Leifsonia xyli subsp. xyli str. CTCB07 2939053 YP_061309.1 CDS Lxx01210 NC_006087.1 119326 119421 D hypothetical protein 119326..119421 Leifsonia xyli subsp. xyli str. CTCB07 2939066 YP_061310.1 CDS Lxx01220 NC_006087.1 119421 119900 D hypothetical protein 119421..119900 Leifsonia xyli subsp. xyli str. CTCB07 2939187 YP_061311.1 CDS Lxx01230 NC_006087.1 120874 121749 D identified by sequence similarity; glycosyltransferase 120874..121749 Leifsonia xyli subsp. xyli str. CTCB07 2939321 YP_061312.1 CDS Lxx01250 NC_006087.1 121753 122289 D identified by sequence similarity; hypothetical protein 121753..122289 Leifsonia xyli subsp. xyli str. CTCB07 2940103 YP_061313.1 CDS prpB NC_006087.1 123941 124840 D identified by sequence similarity; phosphonomutase 123941..124840 Leifsonia xyli subsp. xyli str. CTCB07 2938618 YP_061314.1 CDS aspS NC_006087.1 126892 128169 R identified by sequence similarity; aspartyl-tRNA synthetase complement(126892..128169) Leifsonia xyli subsp. xyli str. CTCB07 2938496 YP_061315.1 CDS gpm NC_006087.1 128327 129016 D identified by sequence similarity; phosphoglycerate mutase 128327..129016 Leifsonia xyli subsp. xyli str. CTCB07 2939269 YP_061316.1 CDS dsbE NC_006087.1 129013 129618 D identified by sequence similarity; thiol:disulfide interchange protein 129013..129618 Leifsonia xyli subsp. xyli str. CTCB07 2940460 YP_061317.1 CDS ccdA NC_006087.1 129620 130357 D identified by sequence similarity; cytochrome C-type biogenesis protein 129620..130357 Leifsonia xyli subsp. xyli str. CTCB07 2938285 YP_061318.1 CDS resB NC_006087.1 130341 131963 D identified by sequence similarity; cytochrome C biosynthesis associated protein 130341..131963 Leifsonia xyli subsp. xyli str. CTCB07 2940128 YP_061319.1 CDS ccsA NC_006087.1 132162 133067 D identified by sequence similarity; cytochrome C assembly protein 132162..133067 Leifsonia xyli subsp. xyli str. CTCB07 2939679 YP_061320.1 CDS Lxx01410 NC_006087.1 139277 140953 D identified by sequence similarity; hypothetical protein 139277..140953 Leifsonia xyli subsp. xyli str. CTCB07 2939731 YP_061321.1 CDS Lxx01420 NC_006087.1 140937 141950 D identified by sequence similarity; 4-nitrophenylphosphatase 140937..141950 Leifsonia xyli subsp. xyli str. CTCB07 2938615 YP_061322.1 CDS menC NC_006087.1 141955 142947 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(141955..142947) Leifsonia xyli subsp. xyli str. CTCB07 2939046 YP_061323.1 CDS menB NC_006087.1 143004 143915 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 143004..143915 Leifsonia xyli subsp. xyli str. CTCB07 2938606 YP_061324.1 CDS menE NC_006087.1 143928 145181 D identified by sequence similarity; O-succinylbenzoate-CoA ligase 143928..145181 Leifsonia xyli subsp. xyli str. CTCB07 2939863 YP_061325.1 CDS menA NC_006087.1 145307 146191 D catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 145307..146191 Leifsonia xyli subsp. xyli str. CTCB07 2938542 YP_061326.1 CDS Lxx01470 NC_006087.1 146263 146586 R hypothetical protein complement(146263..146586) Leifsonia xyli subsp. xyli str. CTCB07 2939045 YP_061327.1 CDS Lxx01480 NC_006087.1 146629 146985 D identified by sequence similarity; hypothetical protein 146629..146985 Leifsonia xyli subsp. xyli str. CTCB07 2938367 YP_061328.1 CDS menD NC_006087.1 146978 148756 D identified by sequence similarity; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; 2-oxoglutarate decarboxylase 146978..148756 Leifsonia xyli subsp. xyli str. CTCB07 2938844 YP_061329.1 CDS Lxx01500 NC_006087.1 148962 149885 D identified by sequence similarity; phage-related integrase 148962..149885 Leifsonia xyli subsp. xyli str. CTCB07 2939703 YP_061330.1 CDS xbaIM NC_006087.1 150188 151045 D identified by sequence similarity; DNA methyltransferase 150188..151045 Leifsonia xyli subsp. xyli str. CTCB07 2939197 YP_061331.1 CDS Lxx01530 NC_006087.1 151081 151923 D identified by sequence similarity; hypothetical protein 151081..151923 Leifsonia xyli subsp. xyli str. CTCB07 2939132 YP_061332.1 CDS Lxx01540 NC_006087.1 151994 153379 D identified by sequence similarity; Na+/H+ antiporter 151994..153379 Leifsonia xyli subsp. xyli str. CTCB07 2939146 YP_061333.1 CDS tnp NC_006087.1 156036 156497 D identified by sequence similarity; transposase, ISlxx4 156036..156497 Leifsonia xyli subsp. xyli str. CTCB07 2940515 YP_061334.1 CDS scrK NC_006087.1 157358 158242 R identified by sequence similarity; fructokinase complement(157358..158242) Leifsonia xyli subsp. xyli str. CTCB07 2940319 YP_061335.1 CDS Lxx01640 NC_006087.1 162235 162936 R identified by sequence similarity; transcriptional regulator complement(162235..162936) Leifsonia xyli subsp. xyli str. CTCB07 2938505 YP_061336.1 CDS upp NC_006087.1 163344 163976 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(163344..163976) Leifsonia xyli subsp. xyli str. CTCB07 2939749 YP_061337.1 CDS Lxx01660 NC_006087.1 164051 164482 D identified by sequence similarity; cytosine/adenosine deaminase 164051..164482 Leifsonia xyli subsp. xyli str. CTCB07 2940057 YP_061338.1 CDS Lxx01680 NC_006087.1 164847 165659 R hypothetical protein complement(164847..165659) Leifsonia xyli subsp. xyli str. CTCB07 2940484 YP_061339.1 CDS Lxx01690 NC_006087.1 165822 165974 R hypothetical protein complement(165822..165974) Leifsonia xyli subsp. xyli str. CTCB07 2939051 YP_061340.1 CDS Lxx01700 NC_006087.1 166133 166438 R identified by sequence similarity; hypothetical protein complement(166133..166438) Leifsonia xyli subsp. xyli str. CTCB07 2938804 YP_061341.1 CDS Lxx01710 NC_006087.1 166435 167397 R identified by sequence similarity; cation transporter complement(166435..167397) Leifsonia xyli subsp. xyli str. CTCB07 2939015 YP_061342.1 CDS proC NC_006087.1 167459 168268 D identified by sequence similarity; pyrroline-5-carboxylate reductase 167459..168268 Leifsonia xyli subsp. xyli str. CTCB07 2939266 YP_061343.1 CDS trkA NC_006087.1 169145 169816 R identified by sequence similarity; potassium uptake protein complement(169145..169816) Leifsonia xyli subsp. xyli str. CTCB07 2939341 YP_061344.1 CDS trkH NC_006087.1 169809 171203 R identified by sequence similarity; potassium uptake protein complement(169809..171203) Leifsonia xyli subsp. xyli str. CTCB07 2938887 YP_061345.1 CDS arsR NC_006087.1 171313 171735 D identified by sequence similarity; ArsR family transcriptional regulator 171313..171735 Leifsonia xyli subsp. xyli str. CTCB07 2938761 YP_061346.1 CDS Lxx01760 NC_006087.1 171831 172040 D identified by sequence similarity; excisionase 171831..172040 Leifsonia xyli subsp. xyli str. CTCB07 2940150 YP_061347.1 CDS Lxx01770 NC_006087.1 172325 172594 D identified by sequence similarity; redoxin 172325..172594 Leifsonia xyli subsp. xyli str. CTCB07 2938950 YP_061348.1 CDS Lxx01780 NC_006087.1 172591 172893 D identified by sequence similarity; hypothetical protein 172591..172893 Leifsonia xyli subsp. xyli str. CTCB07 2939845 YP_061349.1 CDS gntR NC_006087.1 172964 173653 R identified by sequence similarity; GntR family transcriptional regulator complement(172964..173653) Leifsonia xyli subsp. xyli str. CTCB07 2938778 YP_061350.1 CDS gntR NC_006087.1 173665 174339 R identified by sequence similarity; GntR family transcriptional regulator complement(173665..174339) Leifsonia xyli subsp. xyli str. CTCB07 2938620 YP_061351.1 CDS menF NC_006087.1 174841 176115 R identified by sequence similarity; isochorismate mutase complement(174841..176115) Leifsonia xyli subsp. xyli str. CTCB07 2939082 YP_061352.1 CDS ubiE NC_006087.1 176260 177357 D catalyzes the formation of menaquinol or 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol from S-adenosyl-L-methionine and demethylmenaquinol or 2-polyprenyl-6-methoxy-1,4-benzoquinol; ubiquinone/menaquinone biosynthesis methyltransferase 176260..177357 Leifsonia xyli subsp. xyli str. CTCB07 2938603 YP_061353.1 CDS hepB NC_006087.1 177375 178436 D identified by sequence similarity; trans-hexaprenyltranstransferase 177375..178436 Leifsonia xyli subsp. xyli str. CTCB07 2939393 YP_061354.1 CDS frp NC_006087.1 178455 179825 D identified by sequence similarity; ferredoxin/ferredoxin-NADP reductase 178455..179825 Leifsonia xyli subsp. xyli str. CTCB07 2940005 YP_061355.1 CDS Lxx01880 NC_006087.1 182471 182917 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(182471..182917) Leifsonia xyli subsp. xyli str. CTCB07 2939880 YP_061356.1 CDS Lxx01930 NC_006087.1 188236 190275 D identified by sequence similarity; acetyltransferase 188236..190275 Leifsonia xyli subsp. xyli str. CTCB07 2939306 YP_061357.1 CDS Lxx01940 NC_006087.1 190687 191265 D hypothetical protein 190687..191265 Leifsonia xyli subsp. xyli str. CTCB07 2939428 YP_061358.1 CDS Lxx01950 NC_006087.1 191262 191387 D hypothetical protein 191262..191387 Leifsonia xyli subsp. xyli str. CTCB07 2939039 YP_061359.1 CDS Lxx01970 NC_006087.1 192255 192611 D hypothetical protein 192255..192611 Leifsonia xyli subsp. xyli str. CTCB07 2940430 YP_061360.1 CDS Lxx01980 NC_006087.1 192608 193273 D hypothetical protein 192608..193273 Leifsonia xyli subsp. xyli str. CTCB07 2940597 YP_061361.1 CDS Lxx01990 NC_006087.1 193961 194074 D hypothetical protein 193961..194074 Leifsonia xyli subsp. xyli str. CTCB07 2938860 YP_061362.1 CDS Lxx02000 NC_006087.1 194200 194265 D hypothetical protein 194200..194265 Leifsonia xyli subsp. xyli str. CTCB07 2939135 YP_061363.1 CDS Lxx02020 NC_006087.1 195480 196355 R hypothetical protein complement(195480..196355) Leifsonia xyli subsp. xyli str. CTCB07 2939537 YP_061364.1 CDS suhB NC_006087.1 196797 197480 D identified by sequence similarity; inositol monophosphatase 196797..197480 Leifsonia xyli subsp. xyli str. CTCB07 2939834 YP_061365.1 CDS Lxx02040 NC_006087.1 198580 200076 R identified by sequence similarity; dolichyl-phosphate mannose synthase complement(198580..200076) Leifsonia xyli subsp. xyli str. CTCB07 2939474 YP_061366.1 CDS Lxx02050 NC_006087.1 200073 202058 R hypothetical protein complement(200073..202058) Leifsonia xyli subsp. xyli str. CTCB07 2940422 YP_061367.1 CDS Lxx02060 NC_006087.1 202209 202781 R identified by sequence similarity; hydrolase complement(202209..202781) Leifsonia xyli subsp. xyli str. CTCB07 2938422 YP_061368.1 CDS Lxx02070 NC_006087.1 202859 203245 R hypothetical protein complement(202859..203245) Leifsonia xyli subsp. xyli str. CTCB07 2939095 YP_061369.1 CDS Lxx02080 NC_006087.1 203671 204117 D identified by sequence similarity; MarR family transcriptional regulator 203671..204117 Leifsonia xyli subsp. xyli str. CTCB07 2940381 YP_061370.1 CDS ponA NC_006087.1 204175 206487 D identified by sequence similarity; penicillin-binding protein 204175..206487 Leifsonia xyli subsp. xyli str. CTCB07 2939270 YP_061371.1 CDS Lxx02100 NC_006087.1 206573 207166 D identified by sequence similarity; TetR family transcriptional regulator 206573..207166 Leifsonia xyli subsp. xyli str. CTCB07 2938873 YP_061372.1 CDS ptrB NC_006087.1 207416 209572 D identified by sequence similarity; oligopeptidase B 207416..209572 Leifsonia xyli subsp. xyli str. CTCB07 2938832 YP_061373.1 CDS pimB NC_006087.1 210003 211859 R identified by sequence similarity; ABC transporter NBP/MSD fusion protein (pimaricin) complement(210003..211859) Leifsonia xyli subsp. xyli str. CTCB07 2938858 YP_061374.1 CDS pimA NC_006087.1 211984 213714 R identified by sequence similarity; ABC transporter ATP-binding protein complement(211984..213714) Leifsonia xyli subsp. xyli str. CTCB07 2939259 YP_061375.1 CDS Lxx02142 NC_006087.1 213852 214391 R identified by sequence similarity; hypothetical protein complement(213852..214391) Leifsonia xyli subsp. xyli str. CTCB07 2938812 YP_061376.1 CDS Lxx02170 NC_006087.1 216681 217394 R identified by sequence similarity; phosphatase complement(216681..217394) Leifsonia xyli subsp. xyli str. CTCB07 2939137 YP_061377.1 CDS Lxx02180 NC_006087.1 217562 217735 R identified by sequence similarity; hypothetical protein complement(217562..217735) Leifsonia xyli subsp. xyli str. CTCB07 2938888 YP_061378.1 CDS treY NC_006087.1 217889 220195 D identified by sequence similarity; malto-oligosyltrehalose synthase 217889..220195 Leifsonia xyli subsp. xyli str. CTCB07 2938676 YP_061379.1 CDS treZ NC_006087.1 220192 221874 D identified by sequence similarity; malto-oligosyltrehalose trehalohydrolase 220192..221874 Leifsonia xyli subsp. xyli str. CTCB07 2939156 YP_061380.1 CDS treX NC_006087.1 221954 223999 D identified by sequence similarity; glycogen debranching protein 221954..223999 Leifsonia xyli subsp. xyli str. CTCB07 2939159 YP_061381.1 CDS Lxx02220 NC_006087.1 224122 225033 R hypothetical protein complement(224122..225033) Leifsonia xyli subsp. xyli str. CTCB07 2939531 YP_061382.1 CDS Lxx02230 NC_006087.1 225245 225868 D identified by sequence similarity; phosphatidylglycerophosphatase B-like protein 225245..225868 Leifsonia xyli subsp. xyli str. CTCB07 2939030 YP_061384.1 CDS Lxx02300 NC_006087.1 229533 229697 R hypothetical protein complement(229533..229697) Leifsonia xyli subsp. xyli str. CTCB07 2938255 YP_061385.1 CDS Lxx02310 NC_006087.1 230645 231259 R hypothetical protein complement(230645..231259) Leifsonia xyli subsp. xyli str. CTCB07 2940245 YP_061386.1 CDS Lxx02340 NC_006087.1 232592 233836 R identified by sequence similarity; ABC transporter permease complement(232592..233836) Leifsonia xyli subsp. xyli str. CTCB07 2939209 YP_061387.1 CDS Lxx02350 NC_006087.1 233968 235221 R identified by sequence similarity; hypothetical protein complement(233968..235221) Leifsonia xyli subsp. xyli str. CTCB07 2939056 YP_061388.1 CDS Lxx02360 NC_006087.1 235329 236141 R identified by sequence similarity; hypothetical protein complement(235329..236141) Leifsonia xyli subsp. xyli str. CTCB07 2938323 YP_061389.1 CDS serS NC_006087.1 236138 237403 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(236138..237403) Leifsonia xyli subsp. xyli str. CTCB07 2938591 YP_061390.1 CDS pheA NC_006087.1 237687 238670 R identified by sequence similarity; prephenate dehydratase complement(237687..238670) Leifsonia xyli subsp. xyli str. CTCB07 2939207 YP_061391.1 CDS pgm NC_006087.1 238740 240389 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 238740..240389 Leifsonia xyli subsp. xyli str. CTCB07 2938970 YP_061392.1 CDS Lxx02410 NC_006087.1 240436 240831 D identified by sequence similarity; transposase 240436..240831 Leifsonia xyli subsp. xyli str. CTCB07 2938900 YP_061393.1 CDS Lxx02440 NC_006087.1 242155 243000 R identified by sequence similarity; hypothetical protein complement(242155..243000) Leifsonia xyli subsp. xyli str. CTCB07 2939302 YP_061394.1 CDS Lxx02460 NC_006087.1 244342 244611 D hypothetical protein 244342..244611 Leifsonia xyli subsp. xyli str. CTCB07 2938406 YP_061395.1 CDS Lxx02470 NC_006087.1 245320 246267 D identified by sequence similarity; phage-related lysozyme 245320..246267 Leifsonia xyli subsp. xyli str. CTCB07 2938502 YP_061396.1 CDS 5 NC_006087.1 246275 246607 D identified by sequence similarity; hypothetical protein 246275..246607 Leifsonia xyli subsp. xyli str. CTCB07 2939120 YP_061397.1 CDS Lxx02495 NC_006087.1 248725 249201 D identified by sequence similarity; hypothetical protein 248725..249201 Leifsonia xyli subsp. xyli str. CTCB07 2938613 YP_061398.1 CDS Lxx02510 NC_006087.1 250083 251306 D identified by sequence similarity; DNA methyltransferase 250083..251306 Leifsonia xyli subsp. xyli str. CTCB07 2939998 YP_061399.1 CDS Lxx02520 NC_006087.1 251772 251945 R hypothetical protein complement(251772..251945) Leifsonia xyli subsp. xyli str. CTCB07 2938315 YP_061400.1 CDS Lxx02540 NC_006087.1 252391 253980 R identified by sequence similarity; phytoene dehydrogenase complement(252391..253980) Leifsonia xyli subsp. xyli str. CTCB07 2938574 YP_061401.1 CDS Lxx02550 NC_006087.1 254029 254919 R identified by sequence similarity; LysR family transcriptional regulator complement(254029..254919) Leifsonia xyli subsp. xyli str. CTCB07 2939364 YP_061402.1 CDS poaA NC_006087.1 255026 258733 D identified by sequence similarity; proline dehydrogenase 255026..258733 Leifsonia xyli subsp. xyli str. CTCB07 2939147 YP_061403.1 CDS Lxx02560 NC_006087.1 258746 260179 R identified by sequence similarity; two-component system sensor protein complement(258746..260179) Leifsonia xyli subsp. xyli str. CTCB07 2938466 YP_061404.1 CDS tcrA NC_006087.1 260176 260898 R identified by sequence similarity; two-component system regulatory protein complement(260176..260898) Leifsonia xyli subsp. xyli str. CTCB07 2939057 YP_061405.1 CDS Lxx02570 NC_006087.1 261436 262929 D identified by sequence similarity; PTR family peptide transport protein 261436..262929 Leifsonia xyli subsp. xyli str. CTCB07 2939043 YP_061406.1 CDS malE NC_006087.1 263460 264629 D identified by sequence similarity; maltose/trehalose porter 263460..264629 Leifsonia xyli subsp. xyli str. CTCB07 2939118 YP_061407.1 CDS palF NC_006087.1 264689 265612 D identified by sequence similarity; ABC transporter permease 264689..265612 Leifsonia xyli subsp. xyli str. CTCB07 2939813 YP_061408.1 CDS palG NC_006087.1 265609 266436 D identified by sequence similarity; ABC transporter permease 265609..266436 Leifsonia xyli subsp. xyli str. CTCB07 2938616 YP_061409.1 CDS Lxx02630 NC_006087.1 268033 268902 D identified by sequence similarity; RpiR family transcriptional regulator 268033..268902 Leifsonia xyli subsp. xyli str. CTCB07 2940111 YP_061410.1 CDS Lxx02690 NC_006087.1 272869 273273 D hypothetical protein 272869..273273 Leifsonia xyli subsp. xyli str. CTCB07 2938617 YP_061411.1 CDS pimH NC_006087.1 273655 274962 R identified by sequence similarity; integral membrane efflux protein complement(273655..274962) Leifsonia xyli subsp. xyli str. CTCB07 2938586 YP_061412.1 CDS marR NC_006087.1 274959 275246 R identified by sequence similarity; MarR family transcriptional regulator complement(274959..275246) Leifsonia xyli subsp. xyli str. CTCB07 2939609 YP_061413.1 CDS Lxx02720 NC_006087.1 275496 276077 D identified by sequence similarity; lysophospholipase 275496..276077 Leifsonia xyli subsp. xyli str. CTCB07 2939803 YP_061414.1 CDS Lxx02770 NC_006087.1 278621 279850 D identified by sequence similarity; hemagglutinin/hemolysin-like protein 278621..279850 Leifsonia xyli subsp. xyli str. CTCB07 2938809 YP_061415.1 CDS katA NC_006087.1 280254 281747 R identified by sequence similarity; catalase complement(280254..281747) Leifsonia xyli subsp. xyli str. CTCB07 2939038 YP_061416.1 CDS fur NC_006087.1 281761 282204 R identified by sequence similarity; ferric uptake regulator family protein complement(281761..282204) Leifsonia xyli subsp. xyli str. CTCB07 2938850 YP_061417.1 CDS Lxx02800 NC_006087.1 282371 284077 R identified by sequence similarity; Na+/H+ antiporter complement(282371..284077) Leifsonia xyli subsp. xyli str. CTCB07 2939202 YP_061418.1 CDS Lxx02810 NC_006087.1 284701 285150 D identified by sequence similarity; hypothetical protein 284701..285150 Leifsonia xyli subsp. xyli str. CTCB07 2939779 YP_061419.1 CDS Lxx02820 NC_006087.1 285147 285575 D identified by sequence similarity; hypothetical protein 285147..285575 Leifsonia xyli subsp. xyli str. CTCB07 2939360 YP_061420.1 CDS murB NC_006087.1 285610 286746 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 285610..286746 Leifsonia xyli subsp. xyli str. CTCB07 2938628 YP_061421.1 CDS Lxx02840 NC_006087.1 286803 287531 D identified by sequence similarity; hypothetical protein 286803..287531 Leifsonia xyli subsp. xyli str. CTCB07 2940616 YP_061422.1 CDS secE NC_006087.1 290173 290445 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 290173..290445 Leifsonia xyli subsp. xyli str. CTCB07 2938879 YP_061423.1 CDS nusG NC_006087.1 290489 291436 D identified by sequence similarity; transcription antitermination factor 290489..291436 Leifsonia xyli subsp. xyli str. CTCB07 2940392 YP_061424.1 CDS rplK NC_006087.1 291557 291988 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 291557..291988 Leifsonia xyli subsp. xyli str. CTCB07 2938588 YP_061425.1 CDS rplA NC_006087.1 292063 292752 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 292063..292752 Leifsonia xyli subsp. xyli str. CTCB07 2939373 YP_061426.1 CDS Lxx02930 NC_006087.1 293327 293701 D hypothetical protein 293327..293701 Leifsonia xyli subsp. xyli str. CTCB07 2938453 YP_061427.1 CDS Lxx02950 NC_006087.1 295048 296016 R identified by sequence similarity; zinc-binding oxidoreductase complement(295048..296016) Leifsonia xyli subsp. xyli str. CTCB07 2939745 YP_061428.1 CDS Lxx02960 NC_006087.1 296219 296980 R hypothetical protein complement(296219..296980) Leifsonia xyli subsp. xyli str. CTCB07 2939001 YP_061429.1 CDS thuA NC_006087.1 300486 301214 R identified by sequence similarity; ThuA protein complement(300486..301214) Leifsonia xyli subsp. xyli str. CTCB07 2938877 YP_061430.1 CDS Lxx03020 NC_006087.1 301218 302366 R identified by sequence similarity; NADH-dependent dehydrogenase complement(301218..302366) Leifsonia xyli subsp. xyli str. CTCB07 2940546 YP_061431.1 CDS Lxx03030 NC_006087.1 302466 303659 R identified by sequence similarity; ROK family transcriptional regulator complement(302466..303659) Leifsonia xyli subsp. xyli str. CTCB07 2939022 YP_061432.1 CDS Lxx03040 NC_006087.1 303809 304552 D identified by sequence similarity; sugar phosphate isomerase/epimerase 303809..304552 Leifsonia xyli subsp. xyli str. CTCB07 2938482 YP_061433.1 CDS Lxx03050 NC_006087.1 304549 305646 D identified by sequence similarity; NADH-dependent dehydrogenase 304549..305646 Leifsonia xyli subsp. xyli str. CTCB07 2938931 YP_061434.1 CDS Lxx03100 NC_006087.1 308269 308940 R identified by sequence similarity; lipoprotein translocation system complement(308269..308940) Leifsonia xyli subsp. xyli str. CTCB07 2939204 YP_061435.1 CDS Lxx03110 NC_006087.1 308958 310502 R identified by sequence similarity; hypothetical protein complement(308958..310502) Leifsonia xyli subsp. xyli str. CTCB07 2939507 YP_061436.1 CDS Lxx03120 NC_006087.1 310610 311425 D identified by sequence similarity; two-component system regulatory protein 310610..311425 Leifsonia xyli subsp. xyli str. CTCB07 2938847 YP_061437.1 CDS Lxx03130 NC_006087.1 311464 313062 D identified by sequence similarity; two-component system sensor protein 311464..313062 Leifsonia xyli subsp. xyli str. CTCB07 2939485 YP_061438.1 CDS Lxx03140 NC_006087.1 313059 313844 D identified by sequence similarity; hypothetical protein 313059..313844 Leifsonia xyli subsp. xyli str. CTCB07 2939023 YP_061439.1 CDS rplJ NC_006087.1 314078 314596 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 314078..314596 Leifsonia xyli subsp. xyli str. CTCB07 2939836 YP_061440.1 CDS rplL NC_006087.1 314619 315017 D identified by sequence similarity; 50S ribosomal protein L7/L12 314619..315017 Leifsonia xyli subsp. xyli str. CTCB07 2940007 YP_061441.1 CDS Lxx03170 NC_006087.1 315454 315567 R hypothetical protein complement(315454..315567) Leifsonia xyli subsp. xyli str. CTCB07 2938329 YP_061442.1 CDS Lxx03180 NC_006087.1 316073 316264 D hypothetical protein 316073..316264 Leifsonia xyli subsp. xyli str. CTCB07 2938587 YP_061443.1 CDS novA NC_006087.1 316261 317946 D identified by sequence similarity; ABC transporter NBP/MSD fusion protein 316261..317946 Leifsonia xyli subsp. xyli str. CTCB07 2938743 YP_061444.1 CDS Lxx03200 NC_006087.1 318051 318509 R identified by sequence similarity; hypothetical protein complement(318051..318509) Leifsonia xyli subsp. xyli str. CTCB07 2939040 YP_061445.1 CDS sirR NC_006087.1 318947 319615 R identified by sequence similarity; DtxR family iron dependent repressor complement(318947..319615) Leifsonia xyli subsp. xyli str. CTCB07 2938414 YP_061446.1 CDS Lxx03220 NC_006087.1 319649 320683 R identified by sequence similarity; hypothetical protein complement(319649..320683) Leifsonia xyli subsp. xyli str. CTCB07 2939996 YP_061447.1 CDS metB NC_006087.1 320962 322116 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 320962..322116 Leifsonia xyli subsp. xyli str. CTCB07 2939611 YP_061448.1 CDS Lxx03240 NC_006087.1 322239 322343 R hypothetical protein complement(322239..322343) Leifsonia xyli subsp. xyli str. CTCB07 2940586 YP_061449.1 CDS Lxx03250 NC_006087.1 322611 322910 R hypothetical protein complement(322611..322910) Leifsonia xyli subsp. xyli str. CTCB07 2938849 YP_061450.1 CDS Lxx03260 NC_006087.1 322940 323620 R identified by sequence similarity; hypothetical protein complement(322940..323620) Leifsonia xyli subsp. xyli str. CTCB07 2938907 YP_061451.1 CDS Lxx03270 NC_006087.1 324068 325381 D identified by sequence similarity; glycosyl transferase 324068..325381 Leifsonia xyli subsp. xyli str. CTCB07 2938922 YP_061452.1 CDS Lxx03300 NC_006087.1 327746 328087 R hypothetical protein complement(327746..328087) Leifsonia xyli subsp. xyli str. CTCB07 2938481 YP_061453.1 CDS Lxx03310 NC_006087.1 328084 328215 R hypothetical protein complement(328084..328215) Leifsonia xyli subsp. xyli str. CTCB07 2938634 YP_061454.1 CDS Lxx03320 NC_006087.1 328747 329193 R hypothetical protein complement(328747..329193) Leifsonia xyli subsp. xyli str. CTCB07 2938859 YP_061455.1 CDS Lxx03330 NC_006087.1 329958 330176 R hypothetical protein complement(329958..330176) Leifsonia xyli subsp. xyli str. CTCB07 2938990 YP_061456.1 CDS Lxx03340 NC_006087.1 330609 330827 D hypothetical protein 330609..330827 Leifsonia xyli subsp. xyli str. CTCB07 2938840 YP_061457.1 CDS Lxx03350 NC_006087.1 330858 330950 D hypothetical protein 330858..330950 Leifsonia xyli subsp. xyli str. CTCB07 2940464 YP_061458.1 CDS xylB NC_006087.1 331041 332474 R identified by sequence similarity; xylulose kinase complement(331041..332474) Leifsonia xyli subsp. xyli str. CTCB07 2939469 YP_061459.1 CDS xylA NC_006087.1 332485 333639 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(332485..333639) Leifsonia xyli subsp. xyli str. CTCB07 2938805 YP_061460.1 CDS Lxx03380 NC_006087.1 333606 334457 R hypothetical protein complement(333606..334457) Leifsonia xyli subsp. xyli str. CTCB07 2938624 YP_061461.1 CDS Lxx03400 NC_006087.1 334899 335126 D hypothetical protein 334899..335126 Leifsonia xyli subsp. xyli str. CTCB07 2938941 YP_061462.1 CDS pta NC_006087.1 335128 337257 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 335128..337257 Leifsonia xyli subsp. xyli str. CTCB07 2938874 YP_061463.1 CDS ackA NC_006087.1 337254 338447 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 337254..338447 Leifsonia xyli subsp. xyli str. CTCB07 2940075 YP_061464.1 CDS dnaZ NC_006087.1 338721 341090 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 338721..341090 Leifsonia xyli subsp. xyli str. CTCB07 2938926 YP_061465.1 CDS recR NC_006087.1 341094 341690 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 341094..341690 Leifsonia xyli subsp. xyli str. CTCB07 2938642 YP_061466.1 CDS lysC NC_006087.1 341764 343050 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 341764..343050 Leifsonia xyli subsp. xyli str. CTCB07 2939404 YP_061467.1 CDS asd NC_006087.1 343125 344195 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 343125..344195 Leifsonia xyli subsp. xyli str. CTCB07 2938610 YP_061468.1 CDS mqoA NC_006087.1 344343 345818 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 344343..345818 Leifsonia xyli subsp. xyli str. CTCB07 2939437 YP_061469.1 CDS Lxx03480 NC_006087.1 345976 347019 D identified by sequence similarity; hypothetical protein 345976..347019 Leifsonia xyli subsp. xyli str. CTCB07 2939950 YP_061470.1 CDS Lxx03490 NC_006087.1 347270 347515 D hypothetical protein 347270..347515 Leifsonia xyli subsp. xyli str. CTCB07 2939198 YP_061471.1 CDS tdk NC_006087.1 348253 348855 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 348253..348855 Leifsonia xyli subsp. xyli str. CTCB07 2938671 YP_061472.1 CDS udgA NC_006087.1 348959 350266 D identified by sequence similarity; UDP-glucose 6-dehydrogenase 348959..350266 Leifsonia xyli subsp. xyli str. CTCB07 2938868 YP_061473.1 CDS msuE NC_006087.1 351527 352138 D identified by sequence similarity; NADH-dependent FMN reductase 351527..352138 Leifsonia xyli subsp. xyli str. CTCB07 2938886 YP_061474.1 CDS Lxx03555 NC_006087.1 354949 355218 R identified by sequence similarity; hypothetical protein complement(354949..355218) Leifsonia xyli subsp. xyli str. CTCB07 2939817 YP_061475.1 CDS Lxx03560 NC_006087.1 355564 356760 R identified by sequence similarity; hypothetical protein complement(355564..356760) Leifsonia xyli subsp. xyli str. CTCB07 2939164 YP_061476.1 CDS Lxx03565 NC_006087.1 357623 358060 R identified by sequence similarity; hypothetical protein complement(357623..358060) Leifsonia xyli subsp. xyli str. CTCB07 2938337 YP_061477.1 CDS Lxx03570 NC_006087.1 358429 359733 R identified by sequence similarity; phage-related integrase complement(358429..359733) Leifsonia xyli subsp. xyli str. CTCB07 2939506 YP_061478.1 CDS Lxx03590 NC_006087.1 361078 362058 R identified by sequence similarity; phosphohydrolase complement(361078..362058) Leifsonia xyli subsp. xyli str. CTCB07 2938997 YP_061479.1 CDS ponA NC_006087.1 362055 364613 R identified by sequence similarity; penicillin-binding protein complement(362055..364613) Leifsonia xyli subsp. xyli str. CTCB07 2940379 YP_061480.1 CDS Lxx03620 NC_006087.1 364686 364853 D identified by sequence similarity; hypothetical protein 364686..364853 Leifsonia xyli subsp. xyli str. CTCB07 2938307 YP_061481.1 CDS Lxx03610 NC_006087.1 364853 365323 D identified by sequence similarity; translation initiation inhibitor 364853..365323 Leifsonia xyli subsp. xyli str. CTCB07 2938830 YP_061482.1 CDS Lxx03670 NC_006087.1 370583 370669 D hypothetical protein 370583..370669 Leifsonia xyli subsp. xyli str. CTCB07 2938845 YP_061483.1 CDS Lxx03680 NC_006087.1 370771 371061 D hypothetical protein 370771..371061 Leifsonia xyli subsp. xyli str. CTCB07 2938713 YP_061484.1 CDS Lxx03690 NC_006087.1 375552 375857 D identified by sequence similarity; transposase 375552..375857 Leifsonia xyli subsp. xyli str. CTCB07 2939664 YP_061485.1 CDS tpase NC_006087.1 376712 377821 D identified by sequence similarity; transposase, ISlxx2 376712..377821 Leifsonia xyli subsp. xyli str. CTCB07 2939003 YP_061486.1 CDS Lxx03720 NC_006087.1 379735 380019 R hypothetical protein complement(379735..380019) Leifsonia xyli subsp. xyli str. CTCB07 2938854 YP_061487.1 CDS Lxx03730 NC_006087.1 380148 380603 D hypothetical protein 380148..380603 Leifsonia xyli subsp. xyli str. CTCB07 2940527 YP_061488.1 CDS lysL NC_006087.1 380600 381547 R identified by sequence similarity; phage-related lysozyme complement(380600..381547) Leifsonia xyli subsp. xyli str. CTCB07 2939032 YP_061489.1 CDS Lxx03760 NC_006087.1 381558 382043 R hypothetical protein complement(381558..382043) Leifsonia xyli subsp. xyli str. CTCB07 2939059 YP_061490.1 CDS Lxx03770 NC_006087.1 383000 383269 R hypothetical protein complement(383000..383269) Leifsonia xyli subsp. xyli str. CTCB07 2939383 YP_061491.1 CDS Lxx03780 NC_006087.1 383269 384372 R hypothetical protein complement(383269..384372) Leifsonia xyli subsp. xyli str. CTCB07 2938798 YP_061492.1 CDS Lxx03800 NC_006087.1 386201 386503 R hypothetical protein complement(386201..386503) Leifsonia xyli subsp. xyli str. CTCB07 2939060 YP_061493.1 CDS 26 NC_006087.1 386503 388065 R identified by sequence similarity; hypothetical protein complement(386503..388065) Leifsonia xyli subsp. xyli str. CTCB07 2939065 YP_061494.1 CDS Lxx03830 NC_006087.1 388107 389075 R identified by sequence similarity; hypothetical protein complement(388107..389075) Leifsonia xyli subsp. xyli str. CTCB07 2938878 YP_061495.1 CDS Lxx03840 NC_006087.1 389463 389849 R hypothetical protein complement(389463..389849) Leifsonia xyli subsp. xyli str. CTCB07 2938890 YP_061496.1 CDS Lxx03850 NC_006087.1 390183 390878 R identified by sequence similarity; structural phage protein complement(390183..390878) Leifsonia xyli subsp. xyli str. CTCB07 2939037 YP_061497.1 CDS Lxx03860 NC_006087.1 391742 392080 R hypothetical protein complement(391742..392080) Leifsonia xyli subsp. xyli str. CTCB07 2940076 YP_061498.1 CDS Lxx03865 NC_006087.1 392077 392511 R identified by sequence similarity; hypothetical protein complement(392077..392511) Leifsonia xyli subsp. xyli str. CTCB07 2938882 YP_061499.1 CDS Lxx03880 NC_006087.1 392794 393567 R hypothetical protein complement(392794..393567) Leifsonia xyli subsp. xyli str. CTCB07 2938631 YP_061500.1 CDS Lxx03890 NC_006087.1 393751 394119 R hypothetical protein complement(393751..394119) Leifsonia xyli subsp. xyli str. CTCB07 2940155 YP_061501.1 CDS Lxx03900 NC_006087.1 394141 394698 R hypothetical protein complement(394141..394698) Leifsonia xyli subsp. xyli str. CTCB07 2938259 YP_061502.1 CDS Lxx03905 NC_006087.1 394881 395309 R identified by sequence similarity; hypothetical protein complement(394881..395309) Leifsonia xyli subsp. xyli str. CTCB07 2938585 YP_061503.1 CDS 5 NC_006087.1 395410 396117 R identified by sequence similarity; phage-related portal protein complement(395410..396117) Leifsonia xyli subsp. xyli str. CTCB07 2939034 YP_061504.1 CDS 5 NC_006087.1 396180 396866 R identified by sequence similarity; phage-related portal protein complement(396180..396866) Leifsonia xyli subsp. xyli str. CTCB07 2938924 YP_061505.1 CDS 4 NC_006087.1 399503 400588 R identified by sequence similarity; phage-related terminase complement(399503..400588) Leifsonia xyli subsp. xyli str. CTCB07 2939071 YP_061506.1 CDS Lxx03970 NC_006087.1 401956 402609 R hypothetical protein complement(401956..402609) Leifsonia xyli subsp. xyli str. CTCB07 2938521 YP_061507.1 CDS Lxx03980 NC_006087.1 403074 403262 R hypothetical protein complement(403074..403262) Leifsonia xyli subsp. xyli str. CTCB07 2939184 YP_061508.1 CDS Lxx03990 NC_006087.1 403622 403984 R hypothetical protein complement(403622..403984) Leifsonia xyli subsp. xyli str. CTCB07 2938889 YP_061509.1 CDS Lxx04010 NC_006087.1 404648 405418 D identified by sequence similarity; hypothetical protein 404648..405418 Leifsonia xyli subsp. xyli str. CTCB07 2939340 YP_061510.1 CDS Lxx04020 NC_006087.1 405500 405679 D identified by sequence similarity; hypothetical protein 405500..405679 Leifsonia xyli subsp. xyli str. CTCB07 2938715 YP_061511.1 CDS Lxx04030 NC_006087.1 405696 406004 D hypothetical protein 405696..406004 Leifsonia xyli subsp. xyli str. CTCB07 2939535 YP_061512.1 CDS Lxx04040 NC_006087.1 406190 406480 D identified by sequence similarity; membrane-spanning protein 406190..406480 Leifsonia xyli subsp. xyli str. CTCB07 2939584 YP_061513.1 CDS Lxx04050 NC_006087.1 406514 406765 R hypothetical protein complement(406514..406765) Leifsonia xyli subsp. xyli str. CTCB07 2938975 YP_061514.1 CDS topA NC_006087.1 406905 409847 D identified by sequence similarity; DNA topoisomerase I 406905..409847 Leifsonia xyli subsp. xyli str. CTCB07 2940335 YP_061515.1 CDS tmk NC_006087.1 409844 410476 D identified by sequence similarity; thymidylate kinase 409844..410476 Leifsonia xyli subsp. xyli str. CTCB07 2939174 YP_061516.1 CDS Lxx04080 NC_006087.1 410517 411707 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 410517..411707 Leifsonia xyli subsp. xyli str. CTCB07 2938843 YP_061517.1 CDS slpE NC_006087.1 411704 413260 D identified by sequence similarity; peptidase 411704..413260 Leifsonia xyli subsp. xyli str. CTCB07 2939013 YP_061518.1 CDS Lxx04100 NC_006087.1 413324 414064 D identified by sequence similarity; TetR family transcriptional regulator 413324..414064 Leifsonia xyli subsp. xyli str. CTCB07 2938625 YP_061519.1 CDS Lxx04115 NC_006087.1 414343 414510 D identified by sequence similarity; hypothetical protein 414343..414510 Leifsonia xyli subsp. xyli str. CTCB07 2938353 YP_061520.1 CDS Lxx04120 NC_006087.1 414958 415230 R hypothetical protein complement(414958..415230) Leifsonia xyli subsp. xyli str. CTCB07 2938942 YP_061521.1 CDS Lxx04130 NC_006087.1 415311 415604 R hypothetical protein complement(415311..415604) Leifsonia xyli subsp. xyli str. CTCB07 2938614 YP_061522.1 CDS pbp NC_006087.1 416091 417509 D penicillin binding protein; identified by sequence similarity; D-alanyl-D-alanine carboxypeptidase 416091..417509 Leifsonia xyli subsp. xyli str. CTCB07 2939168 YP_061523.1 CDS fadB NC_006087.1 422447 423208 D identified by sequence similarity; 3-hydroxyacyl-CoA dehydrogenase 422447..423208 Leifsonia xyli subsp. xyli str. CTCB07 2938875 YP_061524.1 CDS Lxx04220 NC_006087.1 423269 424231 D hypothetical protein 423269..424231 Leifsonia xyli subsp. xyli str. CTCB07 2938691 YP_061525.1 CDS hipB NC_006087.1 424253 425707 R identified by sequence similarity; transcriptional regulator complement(424253..425707) Leifsonia xyli subsp. xyli str. CTCB07 2938712 YP_061526.1 CDS pckG NC_006087.1 425887 427725 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 425887..427725 Leifsonia xyli subsp. xyli str. CTCB07 2939161 YP_061527.1 CDS Lxx04250 NC_006087.1 427870 429792 R identified by sequence similarity; ABC transporter NBP/MSD fusion protein complement(427870..429792) Leifsonia xyli subsp. xyli str. CTCB07 2939058 YP_061528.1 CDS Lxx04275 NC_006087.1 431664 432101 D identified by sequence similarity; photopigment and puc expression activator 431664..432101 Leifsonia xyli subsp. xyli str. CTCB07 2939552 YP_061529.1 CDS Lxx04290 NC_006087.1 432251 432490 R identified by sequence similarity; transcription regulator complement(432251..432490) Leifsonia xyli subsp. xyli str. CTCB07 2938352 YP_061530.1 CDS tnp NC_006087.1 432431 433111 D identified by sequence similarity; transposase, undefined 432431..433111 Leifsonia xyli subsp. xyli str. CTCB07 2939170 YP_061531.1 CDS tnp NC_006087.1 434868 436079 D identified by sequence similarity; transposase, ISlxx5 434868..436079 Leifsonia xyli subsp. xyli str. CTCB07 2939172 YP_061532.1 CDS Lxx04330 NC_006087.1 436310 436738 D hypothetical protein 436310..436738 Leifsonia xyli subsp. xyli str. CTCB07 2939838 YP_061533.1 CDS ribH NC_006087.1 436851 437327 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(436851..437327) Leifsonia xyli subsp. xyli str. CTCB07 2939176 YP_061534.1 CDS ribA NC_006087.1 437324 438601 R identified by sequence similarity; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phosphate synthase complement(437324..438601) Leifsonia xyli subsp. xyli str. CTCB07 2939011 YP_061535.1 CDS ribC NC_006087.1 438598 439221 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(438598..439221) Leifsonia xyli subsp. xyli str. CTCB07 2939190 YP_061536.1 CDS ribD NC_006087.1 439223 440248 R bifunctional; identified by sequence similarity; riboflavin-specific reductase; riboflavin-specific deaminase complement(439223..440248) Leifsonia xyli subsp. xyli str. CTCB07 2940246 YP_061537.1 CDS Lxx04380 NC_006087.1 440589 441209 D hypothetical protein 440589..441209 Leifsonia xyli subsp. xyli str. CTCB07 2938341 YP_061538.1 CDS Lxx04400 NC_006087.1 441929 442225 D hypothetical protein 441929..442225 Leifsonia xyli subsp. xyli str. CTCB07 2938325 YP_061539.1 CDS glpF NC_006087.1 442841 443617 D identified by sequence similarity; glycerol uptake facilitator protein 442841..443617 Leifsonia xyli subsp. xyli str. CTCB07 2938885 YP_061540.1 CDS glpk NC_006087.1 443702 445222 D identified by sequence similarity; glycerol kinase 443702..445222 Leifsonia xyli subsp. xyli str. CTCB07 2939235 YP_061541.1 CDS Lxx04430 NC_006087.1 445353 445802 D hypothetical protein 445353..445802 Leifsonia xyli subsp. xyli str. CTCB07 2938829 YP_061542.1 CDS Lxx04440 NC_006087.1 445852 446448 R identified by sequence similarity; acetyltransferase complement(445852..446448) Leifsonia xyli subsp. xyli str. CTCB07 2938522 YP_061543.1 CDS trpS NC_006087.1 446445 447458 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(446445..447458) Leifsonia xyli subsp. xyli str. CTCB07 2939368 YP_061544.1 CDS Lxx04460 NC_006087.1 447490 448326 R identified by sequence similarity; exodeoxyribonuclease III complement(447490..448326) Leifsonia xyli subsp. xyli str. CTCB07 2939805 YP_061545.1 CDS Lxx04490 NC_006087.1 449594 449773 R identified by sequence similarity; hypothetical protein complement(449594..449773) Leifsonia xyli subsp. xyli str. CTCB07 2938775 YP_061546.1 CDS Lxx04500 NC_006087.1 449936 450229 R hypothetical protein complement(449936..450229) Leifsonia xyli subsp. xyli str. CTCB07 2938901 YP_061547.1 CDS sdhB NC_006087.1 450475 451236 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(450475..451236) Leifsonia xyli subsp. xyli str. CTCB07 2939201 YP_061548.1 CDS sdhA NC_006087.1 451236 453038 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(451236..453038) Leifsonia xyli subsp. xyli str. CTCB07 2939200 YP_061549.1 CDS sdhD NC_006087.1 453061 453504 R identified by sequence similarity; succinate dehydrogenase, membrane subunit complement(453061..453504) Leifsonia xyli subsp. xyli str. CTCB07 2939086 YP_061550.1 CDS sdhC NC_006087.1 453506 453844 R identified by sequence similarity; succinate dehydrogenase, cytochrome b-556 subunit complement(453506..453844) Leifsonia xyli subsp. xyli str. CTCB07 2940211 YP_061551.1 CDS Lxx04550 NC_006087.1 454092 454316 D hypothetical protein 454092..454316 Leifsonia xyli subsp. xyli str. CTCB07 2938815 YP_061552.1 CDS manC NC_006087.1 454351 455499 R identified by sequence similarity; mannose-1-phosphate guanylyltransferase complement(454351..455499) Leifsonia xyli subsp. xyli str. CTCB07 2938604 YP_061553.1 CDS corA NC_006087.1 456896 457864 D identified by sequence similarity; metal ion transport protein 456896..457864 Leifsonia xyli subsp. xyli str. CTCB07 2938773 YP_061554.1 CDS Lxx04600 NC_006087.1 458160 459245 D identified by sequence similarity; surface lipoprotein 458160..459245 Leifsonia xyli subsp. xyli str. CTCB07 2938503 YP_061555.1 CDS rbsA NC_006087.1 459328 460866 D identified by sequence similarity; ABC transporter ATP-binding protein 459328..460866 Leifsonia xyli subsp. xyli str. CTCB07 2938605 YP_061556.1 CDS Lxx04620 NC_006087.1 461103 462188 D identified by sequence similarity; ABC transporter permease 461103..462188 Leifsonia xyli subsp. xyli str. CTCB07 2938376 YP_061557.1 CDS Lxx04630 NC_006087.1 462563 463480 D identified by sequence similarity; ABC transporter permease 462563..463480 Leifsonia xyli subsp. xyli str. CTCB07 2938801 YP_061558.1 CDS cdd NC_006087.1 463477 463887 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 463477..463887 Leifsonia xyli subsp. xyli str. CTCB07 2938993 YP_061559.1 CDS deoA NC_006087.1 463900 465216 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 463900..465216 Leifsonia xyli subsp. xyli str. CTCB07 2938842 YP_061560.1 CDS add NC_006087.1 465218 466342 D catalyzes the formation of inosine from adenosine; adenosine deaminase 465218..466342 Leifsonia xyli subsp. xyli str. CTCB07 2940147 YP_061561.1 CDS Lxx04670 NC_006087.1 466367 466828 D identified by sequence similarity; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein 466367..466828 Leifsonia xyli subsp. xyli str. CTCB07 2938491 YP_061562.1 CDS Lxx04680 NC_006087.1 466825 467097 D identified by sequence similarity; phosphotransferase IIB component 466825..467097 Leifsonia xyli subsp. xyli str. CTCB07 2940242 YP_061563.1 CDS cpsG NC_006087.1 467194 468873 R identified by sequence similarity; phosphomannomutase complement(467194..468873) Leifsonia xyli subsp. xyli str. CTCB07 2939010 YP_061564.1 CDS deoD NC_006087.1 468870 469700 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(468870..469700) Leifsonia xyli subsp. xyli str. CTCB07 2939698 YP_061565.1 CDS lpdA NC_006087.1 469785 471221 D catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity; flavoprotein disulfide reductase 469785..471221 Leifsonia xyli subsp. xyli str. CTCB07 2939299 YP_061566.1 CDS accC NC_006087.1 473131 474891 R identified by sequence similarity; biotin carboxylase complement(473131..474891) Leifsonia xyli subsp. xyli str. CTCB07 2938963 YP_061567.1 CDS Lxx04750 NC_006087.1 474971 475618 R identified by sequence similarity; hypothetical protein complement(474971..475618) Leifsonia xyli subsp. xyli str. CTCB07 2938841 YP_061568.1 CDS Lxx04770 NC_006087.1 477610 478884 D identified by sequence similarity; two-component system sensor protein 477610..478884 Leifsonia xyli subsp. xyli str. CTCB07 2938627 YP_061569.1 CDS Lxx04780 NC_006087.1 478881 479906 D hypothetical protein 478881..479906 Leifsonia xyli subsp. xyli str. CTCB07 2940608 YP_061570.1 CDS Lxx04790 NC_006087.1 480799 481026 R hypothetical protein complement(480799..481026) Leifsonia xyli subsp. xyli str. CTCB07 2939729 YP_061571.1 CDS pccB NC_006087.1 481023 482645 R identified by sequence similarity; propionyl-CoA carboxylase subunit beta complement(481023..482645) Leifsonia xyli subsp. xyli str. CTCB07 2939294 YP_061572.1 CDS birA NC_006087.1 482683 483495 D identified by sequence similarity; biotin acetyl-CoA-carboxylase synthetase 482683..483495 Leifsonia xyli subsp. xyli str. CTCB07 2939898 YP_061573.1 CDS Lxx04815 NC_006087.1 484014 484613 R identified by sequence similarity; integral membrane protein complement(484014..484613) Leifsonia xyli subsp. xyli str. CTCB07 2940051 YP_061574.1 CDS purK NC_006087.1 484638 485807 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 484638..485807 Leifsonia xyli subsp. xyli str. CTCB07 2939020 YP_061575.1 CDS purE NC_006087.1 485874 486377 D identified by sequence similarity; phosphoribosylaminoimidazole carboxylase, catalytic subunit protein 485874..486377 Leifsonia xyli subsp. xyli str. CTCB07 2939017 YP_061576.1 CDS Lxx04860 NC_006087.1 486374 486769 D hypothetical protein 486374..486769 Leifsonia xyli subsp. xyli str. CTCB07 2939131 YP_061577.1 CDS Lxx04890 NC_006087.1 487782 488915 R identified by sequence similarity; mannosyltransferase complement(487782..488915) Leifsonia xyli subsp. xyli str. CTCB07 2940316 YP_061578.1 CDS strL NC_006087.1 488902 489789 R identified by sequence similarity; dTDP-4-dehydrorhamnose reductase complement(488902..489789) Leifsonia xyli subsp. xyli str. CTCB07 2938720 YP_061579.1 CDS Lxx04910 NC_006087.1 489801 490790 R identified by sequence similarity; thymidine diphosphoglucose 4,6-dehydratase complement(489801..490790) Leifsonia xyli subsp. xyli str. CTCB07 2940496 YP_061580.1 CDS rmlC NC_006087.1 490878 491483 D identified by sequence similarity; dTDP-4-dehydrorhamnose 3,5-epimerase 490878..491483 Leifsonia xyli subsp. xyli str. CTCB07 2940124 YP_061581.1 CDS rmlA NC_006087.1 491500 492363 D identified by sequence similarity; glucose-1-phosphate thymidylyltransferase 491500..492363 Leifsonia xyli subsp. xyli str. CTCB07 2938497 YP_061582.1 CDS wbbL NC_006087.1 492370 493224 R identified by sequence similarity; dTDP-rhamnosyl transferase complement(492370..493224) Leifsonia xyli subsp. xyli str. CTCB07 2939064 YP_061583.1 CDS wbbX NC_006087.1 493413 494645 D identified by sequence similarity; glycosyl transferase 493413..494645 Leifsonia xyli subsp. xyli str. CTCB07 2938590 YP_061584.1 CDS galE NC_006087.1 494638 495564 D identified by sequence similarity; UDP-glucose 4-epimerase 494638..495564 Leifsonia xyli subsp. xyli str. CTCB07 2938662 YP_061585.1 CDS Lxx04970 NC_006087.1 495575 496540 D identified by sequence similarity; rhamnosyltransferase 495575..496540 Leifsonia xyli subsp. xyli str. CTCB07 2939016 YP_061586.1 CDS Lxx04980 NC_006087.1 496898 497902 D identified by sequence similarity; hypothetical protein 496898..497902 Leifsonia xyli subsp. xyli str. CTCB07 2939171 YP_061587.1 CDS rfbB NC_006087.1 498823 500025 R identified by sequence similarity; lipopolysaccharide exporter complement(498823..500025) Leifsonia xyli subsp. xyli str. CTCB07 2939642 YP_061588.1 CDS rfbA NC_006087.1 500036 500971 R identified by sequence similarity; lipopolysaccharide exporter complement(500036..500971) Leifsonia xyli subsp. xyli str. CTCB07 2938436 YP_061589.1 CDS Lxx05030 NC_006087.1 501087 503402 R identified by sequence similarity; lysozyme complement(501087..503402) Leifsonia xyli subsp. xyli str. CTCB07 2939260 YP_061590.1 CDS Lxx05050 NC_006087.1 504120 506528 D identified by sequence similarity; hemagglutinin-like protein 504120..506528 Leifsonia xyli subsp. xyli str. CTCB07 2938608 YP_061591.1 CDS Lxx05060 NC_006087.1 506614 508110 D hypothetical protein 506614..508110 Leifsonia xyli subsp. xyli str. CTCB07 2938846 YP_061592.1 CDS wbjD NC_006087.1 508317 509441 R identified by sequence similarity; O-antigen biosynthesis protein complement(508317..509441) Leifsonia xyli subsp. xyli str. CTCB07 2939271 YP_061593.1 CDS wbjB NC_006087.1 509438 510469 R identified by sequence similarity; polysaccharide biosynthesis protein complement(509438..510469) Leifsonia xyli subsp. xyli str. CTCB07 2938594 YP_061594.1 CDS rfbD NC_006087.1 510466 511371 R identified by sequence similarity; dTDP-4-dehydrorhamnose reductase complement(510466..511371) Leifsonia xyli subsp. xyli str. CTCB07 2938295 YP_061595.1 CDS bplE NC_006087.1 511383 512564 R identified by sequence similarity; glycosyltransferase complement(511383..512564) Leifsonia xyli subsp. xyli str. CTCB07 2940098 YP_061596.1 CDS Lxx05110 NC_006087.1 512542 513315 R identified by sequence similarity; hypothetical protein complement(512542..513315) Leifsonia xyli subsp. xyli str. CTCB07 2939495 YP_061597.1 CDS Lxx05120 NC_006087.1 513804 514172 R identified by sequence similarity; hypothetical protein complement(513804..514172) Leifsonia xyli subsp. xyli str. CTCB07 2940483 YP_061598.1 CDS ycbB NC_006087.1 514172 514909 R identified by sequence similarity; dolichyl-phosphate mannose synthase complement(514172..514909) Leifsonia xyli subsp. xyli str. CTCB07 2939369 YP_061599.1 CDS rgpB NC_006087.1 514972 515958 D identified by sequence similarity; rhamnosyltransferase 514972..515958 Leifsonia xyli subsp. xyli str. CTCB07 2938880 YP_061600.1 CDS exoQ NC_006087.1 515955 517205 R identified by sequence similarity; exopolysaccharide production protein complement(515955..517205) Leifsonia xyli subsp. xyli str. CTCB07 2939937 YP_061601.1 CDS exoQ NC_006087.1 517251 518600 R identified by sequence similarity; exopolysaccharide production protein complement(517251..518600) Leifsonia xyli subsp. xyli str. CTCB07 2938622 YP_061602.1 CDS manA NC_006087.1 518597 519748 R identified by sequence similarity; mannose-6-phosphate isomerase complement(518597..519748) Leifsonia xyli subsp. xyli str. CTCB07 2938621 YP_061603.1 CDS Lxx05200 NC_006087.1 521212 521769 R identified by sequence similarity; hypothetical protein complement(521212..521769) Leifsonia xyli subsp. xyli str. CTCB07 2939033 YP_061604.1 CDS exoB NC_006087.1 521864 522826 D identified by sequence similarity; UDP-glucose 4-epimerase 521864..522826 Leifsonia xyli subsp. xyli str. CTCB07 2938852 YP_061605.1 CDS whiB NC_006087.1 523071 523337 D identified by sequence similarity; regulatory protein 523071..523337 Leifsonia xyli subsp. xyli str. CTCB07 2938493 YP_061606.1 CDS Lxx05260 NC_006087.1 529392 530453 D hypothetical protein 529392..530453 Leifsonia xyli subsp. xyli str. CTCB07 2939317 YP_061607.1 CDS Lxx05270 NC_006087.1 530631 531080 R identified by sequence similarity; hypothetical protein complement(530631..531080) Leifsonia xyli subsp. xyli str. CTCB07 2938682 YP_061608.1 CDS Lxx05280 NC_006087.1 531122 531334 D identified by sequence similarity; hypothetical protein 531122..531334 Leifsonia xyli subsp. xyli str. CTCB07 2940357 YP_061609.1 CDS manB NC_006087.1 531360 532787 D converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; phosphomannomutase/phosphoglucomutase 531360..532787 Leifsonia xyli subsp. xyli str. CTCB07 2938596 YP_061610.1 CDS Lxx05320 NC_006087.1 534059 535063 R identified by sequence similarity; secreted protein complement(534059..535063) Leifsonia xyli subsp. xyli str. CTCB07 2938317 YP_061611.1 CDS Lxx05330 NC_006087.1 535269 535907 R identified by sequence similarity; hypothetical protein complement(535269..535907) Leifsonia xyli subsp. xyli str. CTCB07 2939041 YP_061612.1 CDS Lxx05340 NC_006087.1 535912 537390 R identified by sequence similarity; hypothetical protein complement(535912..537390) Leifsonia xyli subsp. xyli str. CTCB07 2938673 YP_061613.1 CDS mtrA NC_006087.1 537390 538073 D identified by sequence similarity; two-component system regulatory protein 537390..538073 Leifsonia xyli subsp. xyli str. CTCB07 2938668 YP_061614.1 CDS Lxx05360 NC_006087.1 538090 539748 D identified by sequence similarity; two-component system sensor protein 538090..539748 Leifsonia xyli subsp. xyli str. CTCB07 2939014 YP_061615.1 CDS lpqB NC_006087.1 539784 541457 D identified by sequence similarity; lipoprotein LpqB 539784..541457 Leifsonia xyli subsp. xyli str. CTCB07 2938698 YP_061616.1 CDS comF NC_006087.1 541647 542396 D identified by sequence similarity; competence protein F 541647..542396 Leifsonia xyli subsp. xyli str. CTCB07 2939099 YP_061617.1 CDS Lxx05390 NC_006087.1 542635 543333 D identified by sequence similarity; sigma-54 modulation protein 542635..543333 Leifsonia xyli subsp. xyli str. CTCB07 2938413 YP_061618.1 CDS secA NC_006087.1 543545 546352 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 543545..546352 Leifsonia xyli subsp. xyli str. CTCB07 2940590 YP_061619.1 CDS Lxx05410 NC_006087.1 546476 546916 D identified by sequence similarity; hypothetical protein 546476..546916 Leifsonia xyli subsp. xyli str. CTCB07 2939026 YP_061620.1 CDS tnp NC_006087.1 547250 548461 D identified by sequence similarity; transposase, ISlxx5 547250..548461 Leifsonia xyli subsp. xyli str. CTCB07 2940332 YP_061621.1 CDS Lxx05440 NC_006087.1 548467 549378 D identified by sequence similarity; hypothetical protein 548467..549378 Leifsonia xyli subsp. xyli str. CTCB07 2938779 YP_061622.1 CDS pon1 NC_006087.1 549673 552174 D identified by sequence similarity; penicillin-binding protein 549673..552174 Leifsonia xyli subsp. xyli str. CTCB07 2940275 YP_061623.1 CDS Lxx05460 NC_006087.1 552594 552728 D hypothetical protein 552594..552728 Leifsonia xyli subsp. xyli str. CTCB07 2938814 YP_061624.1 CDS Lxx05500 NC_006087.1 555976 556524 D identified by sequence similarity; hypothetical protein 555976..556524 Leifsonia xyli subsp. xyli str. CTCB07 2939002 YP_061625.1 CDS Lxx05505 NC_006087.1 556773 557090 R identified by sequence similarity; hypothetical protein complement(556773..557090) Leifsonia xyli subsp. xyli str. CTCB07 2939246 YP_061626.1 CDS Lxx05510 NC_006087.1 557322 557684 D hypothetical protein 557322..557684 Leifsonia xyli subsp. xyli str. CTCB07 2940256 YP_061627.1 CDS Lxx05520 NC_006087.1 557698 558378 D identified by sequence similarity; hypothetical protein 557698..558378 Leifsonia xyli subsp. xyli str. CTCB07 2939508 YP_061628.1 CDS tpase2 NC_006087.1 559248 560057 R identified by sequence similarity; transposase complement(559248..560057) Leifsonia xyli subsp. xyli str. CTCB07 2938948 YP_061629.1 CDS Lxx05560 NC_006087.1 561497 561982 R hypothetical protein complement(561497..561982) Leifsonia xyli subsp. xyli str. CTCB07 2939210 YP_061630.1 CDS Lxx05580 NC_006087.1 563132 563236 D hypothetical protein 563132..563236 Leifsonia xyli subsp. xyli str. CTCB07 2939870 YP_061631.1 CDS Lxx05600 NC_006087.1 564186 564614 D hypothetical protein 564186..564614 Leifsonia xyli subsp. xyli str. CTCB07 2938394 YP_061632.1 CDS Lxx05610 NC_006087.1 567651 568451 R identified by sequence similarity; oxidoreductase complement(567651..568451) Leifsonia xyli subsp. xyli str. CTCB07 2938872 YP_061633.1 CDS ppnK NC_006087.1 569759 570673 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 569759..570673 Leifsonia xyli subsp. xyli str. CTCB07 2940129 YP_061634.1 CDS recN NC_006087.1 570666 572405 D identified by sequence similarity; DNA repair protein RecN 570666..572405 Leifsonia xyli subsp. xyli str. CTCB07 2939264 YP_061635.1 CDS pyrG NC_006087.1 575315 577036 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 575315..577036 Leifsonia xyli subsp. xyli str. CTCB07 2938876 YP_061636.1 CDS mutT NC_006087.1 577036 577680 D identified by sequence similarity; NUDIX hydrolase 577036..577680 Leifsonia xyli subsp. xyli str. CTCB07 2940096 YP_061637.1 CDS xerD NC_006087.1 577677 578582 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 577677..578582 Leifsonia xyli subsp. xyli str. CTCB07 2940566 YP_061638.1 CDS parA NC_006087.1 578731 579630 D identified by sequence similarity; chromosome partitioning protein 578731..579630 Leifsonia xyli subsp. xyli str. CTCB07 2938744 YP_061639.1 CDS Lxx05690 NC_006087.1 579614 580453 D identified by sequence similarity; hypothetical protein 579614..580453 Leifsonia xyli subsp. xyli str. CTCB07 2940518 YP_061640.1 CDS Lxx05700 NC_006087.1 580443 581057 D identified by sequence similarity; hypothetical protein 580443..581057 Leifsonia xyli subsp. xyli str. CTCB07 2939247 YP_061641.1 CDS rsuA NC_006087.1 581047 581829 D identified by sequence similarity; RNA pseudouridine synthase 581047..581829 Leifsonia xyli subsp. xyli str. CTCB07 2938314 YP_061642.1 CDS tyrA NC_006087.1 581839 582927 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 581839..582927 Leifsonia xyli subsp. xyli str. CTCB07 2938250 YP_061643.1 CDS cmk NC_006087.1 582924 583607 D identified by sequence similarity; cytidylate kinase 582924..583607 Leifsonia xyli subsp. xyli str. CTCB07 2939332 YP_061644.1 CDS engA NC_006087.1 583660 585105 D synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 583660..585105 Leifsonia xyli subsp. xyli str. CTCB07 2938680 YP_061645.1 CDS Lxx05750 NC_006087.1 585124 585603 D hypothetical protein 585124..585603 Leifsonia xyli subsp. xyli str. CTCB07 2939527 YP_061646.1 CDS Lxx05765 NC_006087.1 586105 586299 R identified by sequence similarity; hypothetical protein complement(586105..586299) Leifsonia xyli subsp. xyli str. CTCB07 2939181 YP_061647.1 CDS Lxx05770 NC_006087.1 586550 586888 R identified by sequence similarity; phage-related integrase complement(586550..586888) Leifsonia xyli subsp. xyli str. CTCB07 2939375 YP_061648.1 CDS Lxx05780 NC_006087.1 586937 587290 R identified by sequence similarity; phage-related integrase complement(586937..587290) Leifsonia xyli subsp. xyli str. CTCB07 2939606 YP_061649.1 CDS malG NC_006087.1 589905 590750 D identified by sequence similarity; ABC transporter permease 589905..590750 Leifsonia xyli subsp. xyli str. CTCB07 2938516 YP_061650.1 CDS Lxx05830 NC_006087.1 590805 591869 D identified by sequence similarity; glycerol-3-phosphate ABC transporter receptor protein 590805..591869 Leifsonia xyli subsp. xyli str. CTCB07 2938694 YP_061651.1 CDS Lxx05840 NC_006087.1 592255 592455 R hypothetical protein complement(592255..592455) Leifsonia xyli subsp. xyli str. CTCB07 2939062 YP_061652.1 CDS Lxx05860 NC_006087.1 592704 593531 R identified by sequence similarity; hypothetical protein complement(592704..593531) Leifsonia xyli subsp. xyli str. CTCB07 2939900 YP_061653.1 CDS Lxx05870 NC_006087.1 595222 599037 D identified by sequence similarity; hypothetical protein 595222..599037 Leifsonia xyli subsp. xyli str. CTCB07 2939365 YP_061654.1 CDS mscL NC_006087.1 599276 599713 R identified by sequence similarity; large-conductance mechanosensitive channel complement(599276..599713) Leifsonia xyli subsp. xyli str. CTCB07 2939219 YP_061655.1 CDS Lxx05895 NC_006087.1 599746 600039 R identified by sequence similarity; hypothetical protein complement(599746..600039) Leifsonia xyli subsp. xyli str. CTCB07 2938523 YP_061656.1 CDS Lxx05900 NC_006087.1 600059 600643 R identified by sequence similarity; 5-formyltetrahydrofolate cyclo-ligase complement(600059..600643) Leifsonia xyli subsp. xyli str. CTCB07 2939825 YP_061657.1 CDS galU NC_006087.1 600703 601674 D identified by sequence similarity; UTP-glucose-1-phosphate uridylyltransferase 600703..601674 Leifsonia xyli subsp. xyli str. CTCB07 2939339 YP_061658.1 CDS rimJ NC_006087.1 601697 602359 D identified by sequence similarity; ribosomal-protein-alanine N-acetyltransferase 601697..602359 Leifsonia xyli subsp. xyli str. CTCB07 2940266 YP_061659.1 CDS Lxx05930 NC_006087.1 602442 603491 D identified by sequence similarity; hypothetical protein 602442..603491 Leifsonia xyli subsp. xyli str. CTCB07 2939942 YP_061660.1 CDS Lxx05935 NC_006087.1 603865 605076 R identified by sequence similarity; ArsR family transcriptional regulator complement(603865..605076) Leifsonia xyli subsp. xyli str. CTCB07 2939238 YP_061661.1 CDS tnp NC_006087.1 605571 606782 D identified by sequence similarity; transposase, ISlxx5 605571..606782 Leifsonia xyli subsp. xyli str. CTCB07 2939519 YP_061662.1 CDS Lxx05970 NC_006087.1 607367 608200 D identified by sequence similarity; rRNA methyltransferase 607367..608200 Leifsonia xyli subsp. xyli str. CTCB07 2938857 YP_061663.1 CDS pheS NC_006087.1 608282 609322 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 608282..609322 Leifsonia xyli subsp. xyli str. CTCB07 2938643 YP_061664.1 CDS pheT NC_006087.1 609322 611865 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 609322..611865 Leifsonia xyli subsp. xyli str. CTCB07 2939196 YP_061665.1 CDS Lxx06000 NC_006087.1 611874 612443 R hypothetical protein complement(611874..612443) Leifsonia xyli subsp. xyli str. CTCB07 2938623 YP_061666.1 CDS Lxx06010 NC_006087.1 614352 614543 R hypothetical protein complement(614352..614543) Leifsonia xyli subsp. xyli str. CTCB07 2939798 YP_061667.1 CDS argC NC_006087.1 614898 615941 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 614898..615941 Leifsonia xyli subsp. xyli str. CTCB07 2938721 YP_061668.1 CDS argJ NC_006087.1 615938 617092 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 615938..617092 Leifsonia xyli subsp. xyli str. CTCB07 2940572 YP_061669.1 CDS argB NC_006087.1 617094 618002 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 617094..618002 Leifsonia xyli subsp. xyli str. CTCB07 2940231 YP_061670.1 CDS argD NC_006087.1 617999 619210 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 617999..619210 Leifsonia xyli subsp. xyli str. CTCB07 2939028 YP_061671.1 CDS argF NC_006087.1 619232 620170 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 619232..620170 Leifsonia xyli subsp. xyli str. CTCB07 2940505 YP_061672.1 CDS argH NC_006087.1 620203 621630 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 620203..621630 Leifsonia xyli subsp. xyli str. CTCB07 2939278 YP_061673.1 CDS Lxx06090 NC_006087.1 621630 621740 D hypothetical protein 621630..621740 Leifsonia xyli subsp. xyli str. CTCB07 2939179 YP_061674.1 CDS alkA NC_006087.1 621730 622371 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 621730..622371 Leifsonia xyli subsp. xyli str. CTCB07 2939192 YP_061675.1 CDS Lxx06110 NC_006087.1 622773 623210 R hypothetical protein complement(622773..623210) Leifsonia xyli subsp. xyli str. CTCB07 2938321 YP_061676.1 CDS Lxx06120 NC_006087.1 623235 623438 R hypothetical protein complement(623235..623438) Leifsonia xyli subsp. xyli str. CTCB07 2939358 YP_061677.1 CDS Lxx06130 NC_006087.1 623435 624064 R identified by sequence similarity; hypothetical protein complement(623435..624064) Leifsonia xyli subsp. xyli str. CTCB07 2938818 YP_061678.1 CDS tyrS NC_006087.1 624196 625524 D identified by sequence similarity; tyrosyl-tRNA synthetase 624196..625524 Leifsonia xyli subsp. xyli str. CTCB07 2938855 YP_061679.1 CDS Lxx06150 NC_006087.1 625562 625711 D hypothetical protein 625562..625711 Leifsonia xyli subsp. xyli str. CTCB07 2938576 YP_061680.1 CDS Lxx06160 NC_006087.1 625754 626809 D identified by sequence similarity; galactosyltransferase 625754..626809 Leifsonia xyli subsp. xyli str. CTCB07 2939730 YP_061681.1 CDS tlyA NC_006087.1 626861 627634 D identified by sequence similarity; hemolysin 626861..627634 Leifsonia xyli subsp. xyli str. CTCB07 2939036 YP_061682.1 CDS Lxx06180 NC_006087.1 627651 627947 R hypothetical protein complement(627651..627947) Leifsonia xyli subsp. xyli str. CTCB07 2939185 YP_061683.1 CDS flgL NC_006087.1 628007 628879 R identified by sequence similarity; flagellar hook-associated protein 3 complement(628007..628879) Leifsonia xyli subsp. xyli str. CTCB07 2938399 YP_061684.1 CDS Lxx06210 NC_006087.1 630356 630694 R hypothetical protein complement(630356..630694) Leifsonia xyli subsp. xyli str. CTCB07 2939183 YP_061685.1 CDS fliA NC_006087.1 632192 633010 D identified by sequence similarity; RNA polymerase, sigma factor 632192..633010 Leifsonia xyli subsp. xyli str. CTCB07 2938724 YP_061686.1 CDS fliC NC_006087.1 633236 634069 D identified by sequence similarity; flagellin-like protein 633236..634069 Leifsonia xyli subsp. xyli str. CTCB07 2939055 YP_061687.1 CDS fliS NC_006087.1 635643 636077 D identified by sequence similarity; flagellar-like protein 635643..636077 Leifsonia xyli subsp. xyli str. CTCB07 2939954 YP_061688.1 CDS Lxx06290 NC_006087.1 636106 636345 D hypothetical protein 636106..636345 Leifsonia xyli subsp. xyli str. CTCB07 2939007 YP_061689.1 CDS Lxx06300 NC_006087.1 636509 636865 D hypothetical protein 636509..636865 Leifsonia xyli subsp. xyli str. CTCB07 2939245 YP_061690.1 CDS flgC NC_006087.1 636862 637260 D identified by sequence similarity; flagellar basal-body rod protein 636862..637260 Leifsonia xyli subsp. xyli str. CTCB07 2938831 YP_061691.1 CDS fliE NC_006087.1 637260 637574 D identified by sequence similarity; flagellar basal-body protein 637260..637574 Leifsonia xyli subsp. xyli str. CTCB07 2940448 YP_061692.1 CDS fliF NC_006087.1 637574 638899 D identified by sequence similarity; flagellar M-ring protein 637574..638899 Leifsonia xyli subsp. xyli str. CTCB07 2939574 YP_061693.1 CDS fliG NC_006087.1 639129 640169 D identified by sequence similarity; flagellar motor switch protein 639129..640169 Leifsonia xyli subsp. xyli str. CTCB07 2938531 YP_061694.1 CDS Lxx06350 NC_006087.1 640159 640716 D hypothetical protein 640159..640716 Leifsonia xyli subsp. xyli str. CTCB07 2938535 YP_061695.1 CDS fliI NC_006087.1 640713 642038 D identified by sequence similarity; flagellum-like ATP synthase 640713..642038 Leifsonia xyli subsp. xyli str. CTCB07 2939448 YP_061696.1 CDS flgD NC_006087.1 644614 644886 D identified by sequence similarity; flagellar hook assembly protein 644614..644886 Leifsonia xyli subsp. xyli str. CTCB07 2938686 YP_061697.1 CDS Lxx06410 NC_006087.1 644883 645041 D hypothetical protein 644883..645041 Leifsonia xyli subsp. xyli str. CTCB07 2939645 YP_061698.1 CDS flgE NC_006087.1 645064 646236 D identified by sequence similarity; flagellar hook protein 645064..646236 Leifsonia xyli subsp. xyli str. CTCB07 2938316 YP_061699.1 CDS fliO NC_006087.1 646319 646549 D identified by sequence similarity; motility protein 646319..646549 Leifsonia xyli subsp. xyli str. CTCB07 2939810 YP_061700.1 CDS motA NC_006087.1 646602 647489 D identified by sequence similarity; chemotaxis protein MotA 646602..647489 Leifsonia xyli subsp. xyli str. CTCB07 2939525 YP_061701.1 CDS csrA NC_006087.1 648332 648589 D identified by sequence similarity; carbon storage regulator CsrA 648332..648589 Leifsonia xyli subsp. xyli str. CTCB07 2939677 YP_061702.1 CDS Lxx06510 NC_006087.1 650730 651515 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(650730..651515) Leifsonia xyli subsp. xyli str. CTCB07 2940195 YP_061703.1 CDS arg1 NC_006087.1 651556 652500 R identified by sequence similarity; arginase complement(651556..652500) Leifsonia xyli subsp. xyli str. CTCB07 2939004 YP_061704.1 CDS Lxx06550 NC_006087.1 654210 655118 R identified by sequence similarity; hypothetical protein complement(654210..655118) Leifsonia xyli subsp. xyli str. CTCB07 2938870 YP_061705.1 CDS msrB NC_006087.1 655454 655921 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 655454..655921 Leifsonia xyli subsp. xyli str. CTCB07 2939796 YP_061706.1 CDS msrA NC_006087.1 655918 656427 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 655918..656427 Leifsonia xyli subsp. xyli str. CTCB07 2939157 YP_061707.1 CDS Lxx06590 NC_006087.1 656847 657632 D identified by sequence similarity; DeoR family transcriptional regulator 656847..657632 Leifsonia xyli subsp. xyli str. CTCB07 2938864 YP_061708.1 CDS fruK NC_006087.1 657629 658576 D identified by sequence similarity; 1-phosphofructokinase 657629..658576 Leifsonia xyli subsp. xyli str. CTCB07 2940125 YP_061709.1 CDS Lxx06600 NC_006087.1 658609 660672 D identified by sequence similarity; PTS system, fructose-specific permease, transmembrane protein 658609..660672 Leifsonia xyli subsp. xyli str. CTCB07 2938678 YP_061710.1 CDS Lxx06610 NC_006087.1 660701 661093 D hypothetical protein 660701..661093 Leifsonia xyli subsp. xyli str. CTCB07 2938774 YP_061711.1 CDS gntR NC_006087.1 661171 661854 D identified by sequence similarity; GntR family transcriptional regulator 661171..661854 Leifsonia xyli subsp. xyli str. CTCB07 2939708 YP_061712.1 CDS pgk NC_006087.1 663113 664255 R identified by sequence similarity; glycerate kinase complement(663113..664255) Leifsonia xyli subsp. xyli str. CTCB07 2939186 YP_061713.1 CDS Lxx06680 NC_006087.1 665543 666343 R identified by sequence similarity; hypothetical protein complement(665543..666343) Leifsonia xyli subsp. xyli str. CTCB07 2939188 YP_061714.1 CDS Lxx06690 NC_006087.1 666340 666657 R identified by sequence similarity; oxidoreductase complement(666340..666657) Leifsonia xyli subsp. xyli str. CTCB07 2938994 YP_061715.1 CDS malF NC_006087.1 668200 669117 D identified by sequence similarity; ABC transporter permease 668200..669117 Leifsonia xyli subsp. xyli str. CTCB07 2939142 YP_061716.1 CDS malG NC_006087.1 669114 669977 D identified by sequence similarity; ABC transporter permease 669114..669977 Leifsonia xyli subsp. xyli str. CTCB07 2939203 YP_061717.1 CDS Lxx06740 NC_006087.1 670004 671191 D identified by sequence similarity; ROK family transcriptional regulator 670004..671191 Leifsonia xyli subsp. xyli str. CTCB07 2938952 YP_061718.1 CDS metG NC_006087.1 672631 674400 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 672631..674400 Leifsonia xyli subsp. xyli str. CTCB07 2938362 YP_061719.1 CDS argS NC_006087.1 676318 678006 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 676318..678006 Leifsonia xyli subsp. xyli str. CTCB07 2940204 YP_061720.1 CDS Lxx06820 NC_006087.1 678099 678797 D hypothetical protein 678099..678797 Leifsonia xyli subsp. xyli str. CTCB07 2939861 YP_061721.1 CDS Lxx06832 NC_006087.1 679374 680156 R identified by sequence similarity; glycosyltransferase complement(679374..680156) Leifsonia xyli subsp. xyli str. CTCB07 2939595 YP_061722.1 CDS Lxx06835 NC_006087.1 680157 681380 R identified by sequence similarity; major facilitator superfamily H(+) antiporter complement(680157..681380) Leifsonia xyli subsp. xyli str. CTCB07 2938912 YP_061723.1 CDS Lxx06840 NC_006087.1 681377 682000 R identified by sequence similarity; iron-sulfur flavoprotein complement(681377..682000) Leifsonia xyli subsp. xyli str. CTCB07 2939283 YP_061724.1 CDS lysA NC_006087.1 685906 687321 D identified by sequence similarity; diaminopimelate decarboxylase 685906..687321 Leifsonia xyli subsp. xyli str. CTCB07 2939837 YP_061725.1 CDS thrA NC_006087.1 687318 688673 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 687318..688673 Leifsonia xyli subsp. xyli str. CTCB07 2939000 YP_061726.1 CDS thrC NC_006087.1 688675 689787 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 688675..689787 Leifsonia xyli subsp. xyli str. CTCB07 2939191 YP_061727.1 CDS thrB NC_006087.1 689787 690758 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 689787..690758 Leifsonia xyli subsp. xyli str. CTCB07 2939143 YP_061728.1 CDS rho NC_006087.1 690967 693105 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 690967..693105 Leifsonia xyli subsp. xyli str. CTCB07 2939009 YP_061729.1 CDS prfA NC_006087.1 693192 694268 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 693192..694268 Leifsonia xyli subsp. xyli str. CTCB07 2939035 YP_061730.1 CDS cysE NC_006087.1 694435 694998 R identified by sequence similarity; serine O-acetyltransferase complement(694435..694998) Leifsonia xyli subsp. xyli str. CTCB07 2938999 YP_061731.1 CDS hemK NC_006087.1 695952 696830 D identified by sequence similarity; methyltransferase 695952..696830 Leifsonia xyli subsp. xyli str. CTCB07 2940317 YP_061732.1 CDS Lxx06960 NC_006087.1 696849 697481 R identified by sequence similarity; hydrolase complement(696849..697481) Leifsonia xyli subsp. xyli str. CTCB07 2939027 YP_061733.1 CDS Lxx06950 NC_006087.1 697560 698258 D identified by sequence similarity; translation factor 697560..698258 Leifsonia xyli subsp. xyli str. CTCB07 2938865 YP_061734.1 CDS rfe NC_006087.1 698263 699531 D identified by sequence similarity; undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 698263..699531 Leifsonia xyli subsp. xyli str. CTCB07 2938526 YP_061735.1 CDS Lxx06980 NC_006087.1 699528 700034 D identified by sequence similarity; hypothetical protein 699528..700034 Leifsonia xyli subsp. xyli str. CTCB07 2938589 YP_061736.1 CDS atpB NC_006087.1 700205 701002 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 700205..701002 Leifsonia xyli subsp. xyli str. CTCB07 2938504 YP_061737.1 CDS atpE NC_006087.1 701054 701275 D identified by sequence similarity; ATP synthase, C chain 701054..701275 Leifsonia xyli subsp. xyli str. CTCB07 2939442 YP_061738.1 CDS atpF NC_006087.1 701308 701880 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 701308..701880 Leifsonia xyli subsp. xyli str. CTCB07 2938593 YP_061739.1 CDS atpH NC_006087.1 701880 702671 D produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 701880..702671 Leifsonia xyli subsp. xyli str. CTCB07 2939780 YP_061740.1 CDS atpA NC_006087.1 702698 704335 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 702698..704335 Leifsonia xyli subsp. xyli str. CTCB07 2939124 YP_061741.1 CDS atpG NC_006087.1 704379 705278 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 704379..705278 Leifsonia xyli subsp. xyli str. CTCB07 2938780 YP_061742.1 CDS atpD NC_006087.1 705304 706767 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 705304..706767 Leifsonia xyli subsp. xyli str. CTCB07 2938630 YP_061743.1 CDS atpC NC_006087.1 706770 707030 D produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 706770..707030 Leifsonia xyli subsp. xyli str. CTCB07 2938936 YP_061744.1 CDS Lxx07070 NC_006087.1 707053 707589 D identified by sequence similarity; hypothetical protein 707053..707589 Leifsonia xyli subsp. xyli str. CTCB07 2939618 YP_061745.1 CDS Lxx07080 NC_006087.1 707591 708385 D identified by sequence similarity; hypothetical protein 707591..708385 Leifsonia xyli subsp. xyli str. CTCB07 2939265 YP_061746.1 CDS tagI NC_006087.1 708405 709022 R identified by sequence similarity; DNA-3-methyladenine glycosydase I complement(708405..709022) Leifsonia xyli subsp. xyli str. CTCB07 2939012 YP_061747.1 CDS ada NC_006087.1 709019 709516 R identified by sequence similarity; methylated-DNA-protein-cysteine S-methyltransferase complement(709019..709516) Leifsonia xyli subsp. xyli str. CTCB07 2939600 YP_061748.1 CDS Lxx07120 NC_006087.1 711710 713461 R identified by sequence similarity; peptidase complement(711710..713461) Leifsonia xyli subsp. xyli str. CTCB07 2940611 YP_061749.1 CDS nusA NC_006087.1 714416 715414 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 714416..715414 Leifsonia xyli subsp. xyli str. CTCB07 2940389 YP_061750.1 CDS Lxx07140 NC_006087.1 715468 715728 D identified by sequence similarity; hypothetical protein 715468..715728 Leifsonia xyli subsp. xyli str. CTCB07 2938940 YP_061751.1 CDS infB NC_006087.1 715801 718551 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 715801..718551 Leifsonia xyli subsp. xyli str. CTCB07 2939193 YP_061752.1 CDS rbfA NC_006087.1 718628 719056 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 718628..719056 Leifsonia xyli subsp. xyli str. CTCB07 2939189 YP_061753.1 CDS nth NC_006087.1 721323 722192 R identified by sequence similarity; adenine glycosylase complement(721323..722192) Leifsonia xyli subsp. xyli str. CTCB07 2938884 YP_061754.1 CDS panE NC_006087.1 722246 723304 R identified by sequence similarity; 2-dehydropantoate 2-reductase complement(722246..723304) Leifsonia xyli subsp. xyli str. CTCB07 2939547 YP_061755.1 CDS Lxx07210 NC_006087.1 723391 723900 R identified by sequence similarity; hypothetical protein complement(723391..723900) Leifsonia xyli subsp. xyli str. CTCB07 2939199 YP_061756.1 CDS Lxx07220 NC_006087.1 724280 724969 R identified by sequence similarity; phosphonoacetaldehyde hydrolase complement(724280..724969) Leifsonia xyli subsp. xyli str. CTCB07 2938996 YP_061757.1 CDS yhfR NC_006087.1 724966 725730 R identified by sequence similarity; GntR family transcriptional regulator complement(724966..725730) Leifsonia xyli subsp. xyli str. CTCB07 2940282 YP_061758.1 CDS Lxx07247 NC_006087.1 727347 727646 R identified by sequence similarity; TetR family transcriptional regulator complement(727347..727646) Leifsonia xyli subsp. xyli str. CTCB07 2940308 YP_061759.1 CDS truB NC_006087.1 728021 728929 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 728021..728929 Leifsonia xyli subsp. xyli str. CTCB07 2938897 YP_061760.1 CDS Lxx07270 NC_006087.1 729374 729856 D identified by sequence similarity; hypothetical protein 729374..729856 Leifsonia xyli subsp. xyli str. CTCB07 2939692 YP_061761.1 CDS ribF NC_006087.1 729853 730797 D identified by sequence similarity; riboflavin kinase/ FMN adenyltransferase 729853..730797 Leifsonia xyli subsp. xyli str. CTCB07 2939206 YP_061762.1 CDS Lxx07290 NC_006087.1 730794 732005 D identified by sequence similarity; ABC transporter permease 730794..732005 Leifsonia xyli subsp. xyli str. CTCB07 2939771 YP_061763.1 CDS sorC NC_006087.1 732087 733307 D identified by sequence similarity; transcriptional regulator 732087..733307 Leifsonia xyli subsp. xyli str. CTCB07 2939044 YP_061764.1 CDS Lxx07340 NC_006087.1 735478 736443 D identified by sequence similarity; ABC transporter ferrichrome-binding protein 735478..736443 Leifsonia xyli subsp. xyli str. CTCB07 2940541 YP_061765.1 CDS Lxx07390 NC_006087.1 738285 738791 D identified by sequence similarity; hypothetical protein 738285..738791 Leifsonia xyli subsp. xyli str. CTCB07 2939019 YP_061766.1 CDS Lxx07400 NC_006087.1 738831 739445 D identified by sequence similarity; hypothetical protein 738831..739445 Leifsonia xyli subsp. xyli str. CTCB07 2940488 YP_061767.1 CDS Lxx07410 NC_006087.1 739510 740037 R identified by sequence similarity; hypothetical protein complement(739510..740037) Leifsonia xyli subsp. xyli str. CTCB07 2939324 YP_061768.1 CDS Lxx07420 NC_006087.1 740039 740317 R identified by sequence similarity; hypothetical protein complement(740039..740317) Leifsonia xyli subsp. xyli str. CTCB07 2938343 YP_061769.1 CDS Lxx07430 NC_006087.1 740376 740600 D identified by sequence similarity; heavy-metal-associated protein 740376..740600 Leifsonia xyli subsp. xyli str. CTCB07 2939744 YP_061770.1 CDS ctpA NC_006087.1 740597 742729 D identified by sequence similarity; cation-transporting P-type ATPase 740597..742729 Leifsonia xyli subsp. xyli str. CTCB07 2938534 YP_061771.1 CDS Lxx07450 NC_006087.1 742878 743441 D identified by sequence similarity; phage-related integrase 742878..743441 Leifsonia xyli subsp. xyli str. CTCB07 2940589 YP_061772.1 CDS Lxx07470 NC_006087.1 743797 745311 R identified by sequence similarity; hemagglutinin/hemolysin-like protein complement(743797..745311) Leifsonia xyli subsp. xyli str. CTCB07 2939682 YP_061773.1 CDS grx NC_006087.1 745658 745906 R identified by sequence similarity; glutaredoxin complement(745658..745906) Leifsonia xyli subsp. xyli str. CTCB07 2939985 YP_061774.1 CDS Lxx07485 NC_006087.1 746450 747508 D identified by sequence similarity; secreted protein 746450..747508 Leifsonia xyli subsp. xyli str. CTCB07 2938632 YP_061775.1 CDS Lxx07490 NC_006087.1 748683 750848 D identified by sequence similarity; ATP-dependent RNA helicase 748683..750848 Leifsonia xyli subsp. xyli str. CTCB07 2939167 YP_061776.1 CDS Lxx07500 NC_006087.1 751191 751829 R identified by sequence similarity; two-component system regulatory protein complement(751191..751829) Leifsonia xyli subsp. xyli str. CTCB07 2938460 YP_061777.1 CDS Lxx07510 NC_006087.1 751826 753016 R identified by sequence similarity; two-component system sensor protein complement(751826..753016) Leifsonia xyli subsp. xyli str. CTCB07 2939345 YP_061778.1 CDS pfkA NC_006087.1 753935 755011 D identified by sequence similarity; 6-phosphofructokinase 753935..755011 Leifsonia xyli subsp. xyli str. CTCB07 2939859 YP_061779.1 CDS Lxx07540 NC_006087.1 755048 756013 D identified by sequence similarity; zinc-binding dehydrogenase 755048..756013 Leifsonia xyli subsp. xyli str. CTCB07 2939577 YP_061780.1 CDS Lxx07550 NC_006087.1 756104 756415 D hypothetical protein 756104..756415 Leifsonia xyli subsp. xyli str. CTCB07 2938598 YP_061781.1 CDS Lxx07580 NC_006087.1 757483 758238 R identified by sequence similarity; LysR family transcriptional regulator complement(757483..758238) Leifsonia xyli subsp. xyli str. CTCB07 2939008 YP_061782.1 CDS Lxx07570 NC_006087.1 758273 758656 D identified by sequence similarity; hypothetical protein 758273..758656 Leifsonia xyli subsp. xyli str. CTCB07 2939194 YP_061783.1 CDS Lxx07610 NC_006087.1 758876 759088 R hypothetical protein complement(758876..759088) Leifsonia xyli subsp. xyli str. CTCB07 2939177 YP_061784.1 CDS Lxx07620 NC_006087.1 759116 761089 R identified by sequence similarity; hypothetical protein complement(759116..761089) Leifsonia xyli subsp. xyli str. CTCB07 2940058 YP_061785.1 CDS Lxx07640 NC_006087.1 762245 762373 R hypothetical protein complement(762245..762373) Leifsonia xyli subsp. xyli str. CTCB07 2940157 YP_061786.1 CDS Lxx07650 NC_006087.1 762862 763218 R hypothetical protein complement(762862..763218) Leifsonia xyli subsp. xyli str. CTCB07 2938861 YP_061787.1 CDS Lxx07660 NC_006087.1 763248 763502 R hypothetical protein complement(763248..763502) Leifsonia xyli subsp. xyli str. CTCB07 2939995 YP_061788.1 CDS Lxx07670 NC_006087.1 764461 764760 D hypothetical protein 764461..764760 Leifsonia xyli subsp. xyli str. CTCB07 2938853 YP_061789.1 CDS trsE NC_006087.1 765081 767606 D identified by sequence similarity; transfer complex protein 765081..767606 Leifsonia xyli subsp. xyli str. CTCB07 2939999 YP_061790.1 CDS trsK NC_006087.1 767879 769723 D identified by sequence similarity; conjugal plasmid transfer, ATPase 767879..769723 Leifsonia xyli subsp. xyli str. CTCB07 2938407 YP_061791.1 CDS rlx NC_006087.1 771331 772905 R identified by sequence similarity; mobilization protein complement(771331..772905) Leifsonia xyli subsp. xyli str. CTCB07 2938883 YP_061792.1 CDS Lxx07715 NC_006087.1 773428 773811 R identified by sequence similarity; hypothetical protein complement(773428..773811) Leifsonia xyli subsp. xyli str. CTCB07 2939959 YP_061793.1 CDS Lxx07740 NC_006087.1 775252 776277 D identified by sequence similarity; secreted protein 775252..776277 Leifsonia xyli subsp. xyli str. CTCB07 2939484 YP_061794.1 CDS pglA NC_006087.1 778148 779638 D identified by sequence similarity; endopolygalacturonase 778148..779638 Leifsonia xyli subsp. xyli str. CTCB07 2939326 YP_061795.1 CDS Lxx07755 NC_006087.1 780192 780614 D identified by sequence similarity; hypothetical protein 780192..780614 Leifsonia xyli subsp. xyli str. CTCB07 2939892 YP_061796.1 CDS tnp NC_006087.1 781177 782388 D identified by sequence similarity; transposase, ISlxx5 781177..782388 Leifsonia xyli subsp. xyli str. CTCB07 2939100 YP_061797.1 CDS Lxx07780 NC_006087.1 783238 783435 D hypothetical protein 783238..783435 Leifsonia xyli subsp. xyli str. CTCB07 2939067 YP_061798.1 CDS Lxx07795 NC_006087.1 786215 787171 R identified by sequence similarity; lysozyme complement(786215..787171) Leifsonia xyli subsp. xyli str. CTCB07 2938403 YP_061799.1 CDS Lxx07798 NC_006087.1 789913 790989 R identified by sequence similarity; hypothetical protein complement(789913..790989) Leifsonia xyli subsp. xyli str. CTCB07 2940331 YP_061800.1 CDS tig NC_006087.1 791454 792854 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 791454..792854 Leifsonia xyli subsp. xyli str. CTCB07 2940012 YP_061801.1 CDS Lxx07840 NC_006087.1 792928 793413 D identified by sequence similarity; hypothetical protein 792928..793413 Leifsonia xyli subsp. xyli str. CTCB07 2939249 YP_061802.1 CDS clpP NC_006087.1 793536 794129 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 793536..794129 Leifsonia xyli subsp. xyli str. CTCB07 2939025 YP_061803.1 CDS clpP NC_006087.1 794171 794842 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 794171..794842 Leifsonia xyli subsp. xyli str. CTCB07 2938711 YP_061804.1 CDS clpX NC_006087.1 795003 796277 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 795003..796277 Leifsonia xyli subsp. xyli str. CTCB07 2939982 YP_061805.1 CDS Lxx07900 NC_006087.1 798555 798821 R hypothetical protein complement(798555..798821) Leifsonia xyli subsp. xyli str. CTCB07 2938602 YP_061806.1 CDS Lxx07910 NC_006087.1 798821 799291 R identified by sequence similarity; acetyltransferase complement(798821..799291) Leifsonia xyli subsp. xyli str. CTCB07 2938607 YP_061807.1 CDS Lxx07920 NC_006087.1 799331 799756 R identified by sequence similarity; acetyltransferase complement(799331..799756) Leifsonia xyli subsp. xyli str. CTCB07 2940441 YP_061808.1 CDS valS NC_006087.1 799774 802362 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(799774..802362) Leifsonia xyli subsp. xyli str. CTCB07 2939543 YP_061809.1 CDS Lxx07960 NC_006087.1 803870 804619 D identified by sequence similarity; TetR family transcriptional regulator 803870..804619 Leifsonia xyli subsp. xyli str. CTCB07 2939431 YP_061810.1 CDS ileS NC_006087.1 804660 808019 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 804660..808019 Leifsonia xyli subsp. xyli str. CTCB07 2938988 YP_061811.1 CDS folC NC_006087.1 808016 809383 D identified by sequence similarity; folylpolyglutamate synthase 808016..809383 Leifsonia xyli subsp. xyli str. CTCB07 2940436 YP_061812.1 CDS Lxx07990 NC_006087.1 809380 809793 D identified by sequence similarity; hypothetical protein 809380..809793 Leifsonia xyli subsp. xyli str. CTCB07 2939460 YP_061813.1 CDS ndk NC_006087.1 809790 810212 D identified by sequence similarity; nucleoside diphosphate kinase 809790..810212 Leifsonia xyli subsp. xyli str. CTCB07 2939149 YP_061814.1 CDS Lxx08010 NC_006087.1 810360 810977 R identified by sequence similarity; hypothetical protein complement(810360..810977) Leifsonia xyli subsp. xyli str. CTCB07 2938280 YP_061815.1 CDS rng NC_006087.1 811262 813805 D identified by sequence similarity; ribonuclease G 811262..813805 Leifsonia xyli subsp. xyli str. CTCB07 2939244 YP_061816.1 CDS Lxx08030 NC_006087.1 813833 814102 R identified by sequence similarity; hypothetical protein complement(813833..814102) Leifsonia xyli subsp. xyli str. CTCB07 2938836 YP_061817.2 CDS rplU NC_006087.1 814367 814675 D identified by sequence similarity; 50S ribosomal protein L21 814367..814675 Leifsonia xyli subsp. xyli str. CTCB07 2939163 YP_061818.1 CDS rpmA NC_006087.1 814705 814962 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 814705..814962 Leifsonia xyli subsp. xyli str. CTCB07 2940117 YP_061819.1 CDS obgE NC_006087.1 815050 816594 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 815050..816594 Leifsonia xyli subsp. xyli str. CTCB07 2940019 YP_061820.1 CDS proB NC_006087.1 816591 817403 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 816591..817403 Leifsonia xyli subsp. xyli str. CTCB07 2938837 YP_061821.1 CDS proA NC_006087.1 817414 818679 D identified by sequence similarity; gamma-glutamylphosphate reductase 817414..818679 Leifsonia xyli subsp. xyli str. CTCB07 2940354 YP_061822.1 CDS Lxx08090 NC_006087.1 818738 818974 D hypothetical protein 818738..818974 Leifsonia xyli subsp. xyli str. CTCB07 2938777 YP_061823.1 CDS nadD NC_006087.1 818986 819588 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 818986..819588 Leifsonia xyli subsp. xyli str. CTCB07 2939614 YP_061824.1 CDS Lxx08110 NC_006087.1 819585 820877 D identified by sequence similarity; hypothetical protein 819585..820877 Leifsonia xyli subsp. xyli str. CTCB07 2939489 YP_061825.1 CDS Lxx08120 NC_006087.1 820927 821298 D identified by sequence similarity; hypothetical protein 820927..821298 Leifsonia xyli subsp. xyli str. CTCB07 2938401 YP_061826.1 CDS Lxx08130 NC_006087.1 821360 821605 D identified by sequence similarity; hypothetical protein 821360..821605 Leifsonia xyli subsp. xyli str. CTCB07 2939175 YP_061827.1 CDS lytR NC_006087.1 821921 823222 D identified by sequence similarity; LytR family transcriptional regulator 821921..823222 Leifsonia xyli subsp. xyli str. CTCB07 2939732 YP_061828.1 CDS Lxx08160 NC_006087.1 823465 824838 D identified by sequence similarity; transmembrane efflux pump 823465..824838 Leifsonia xyli subsp. xyli str. CTCB07 2939310 YP_061829.1 CDS menA NC_006087.1 824820 825659 R identified by sequence similarity; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(824820..825659) Leifsonia xyli subsp. xyli str. CTCB07 2939195 YP_061830.1 CDS Lxx08180 NC_006087.1 825804 826355 D identified by sequence similarity; hypothetical protein 825804..826355 Leifsonia xyli subsp. xyli str. CTCB07 2939960 YP_061831.1 CDS Lxx08190 NC_006087.1 826537 827373 R identified by sequence similarity; hypothetical protein complement(826537..827373) Leifsonia xyli subsp. xyli str. CTCB07 2938722 YP_061832.1 CDS Lxx08200 NC_006087.1 827625 828701 R identified by sequence similarity; hypothetical protein complement(827625..828701) Leifsonia xyli subsp. xyli str. CTCB07 2939331 YP_061833.1 CDS Lxx08270 NC_006087.1 831612 832508 R identified by sequence similarity; hypothetical protein complement(831612..832508) Leifsonia xyli subsp. xyli str. CTCB07 2939024 YP_061834.1 CDS Lxx08260 NC_006087.1 832597 833283 D identified by sequence similarity; hydrolase 832597..833283 Leifsonia xyli subsp. xyli str. CTCB07 2938286 YP_061835.1 CDS gcd14 NC_006087.1 833280 834299 D identified by sequence similarity; SAM-dependent methyltransferase 833280..834299 Leifsonia xyli subsp. xyli str. CTCB07 2940031 YP_061836.1 CDS aceF NC_006087.1 834362 835279 D identified by sequence similarity; peptidylprolyl isomerase 834362..835279 Leifsonia xyli subsp. xyli str. CTCB07 2938477 YP_061837.1 CDS Lxx08300 NC_006087.1 835324 836352 D identified by sequence similarity; hypothetical protein 835324..836352 Leifsonia xyli subsp. xyli str. CTCB07 2939155 YP_061838.1 CDS Lxx08310 NC_006087.1 836366 837319 D identified by sequence similarity; DeoR family transcriptional regulator 836366..837319 Leifsonia xyli subsp. xyli str. CTCB07 2938869 YP_061839.1 CDS tatE NC_006087.1 837682 837912 D identified by sequence similarity; Sec-independent protein translocase protein 837682..837912 Leifsonia xyli subsp. xyli str. CTCB07 2938405 YP_061840.1 CDS tatC NC_006087.1 837956 838708 D identified by sequence similarity; sec-independent protein translocase protein TatC 837956..838708 Leifsonia xyli subsp. xyli str. CTCB07 2939515 YP_061841.1 CDS Lxx08340 NC_006087.1 838765 841200 D identified by sequence similarity; ATP-dependent RNA helicase 838765..841200 Leifsonia xyli subsp. xyli str. CTCB07 2939258 YP_061842.1 CDS lnt NC_006087.1 841193 842791 D identified by sequence similarity; apolipoprotein N-acyltransferase 841193..842791 Leifsonia xyli subsp. xyli str. CTCB07 2939902 YP_061843.1 CDS Lxx08360 NC_006087.1 842816 843187 R identified by sequence similarity; hypothetical protein complement(842816..843187) Leifsonia xyli subsp. xyli str. CTCB07 2938669 YP_061844.1 CDS Lxx08370 NC_006087.1 843959 844750 R identified by sequence similarity; secreted protein complement(843959..844750) Leifsonia xyli subsp. xyli str. CTCB07 2938601 YP_061845.1 CDS Lxx08380 NC_006087.1 845049 845210 R hypothetical protein complement(845049..845210) Leifsonia xyli subsp. xyli str. CTCB07 2938723 YP_061846.1 CDS fabG NC_006087.1 845383 846153 D identified by sequence similarity; short chain dehydrogenase 845383..846153 Leifsonia xyli subsp. xyli str. CTCB07 2939819 YP_061847.1 CDS yuxL NC_006087.1 846150 848177 D identified by sequence similarity; acylaminoacyl peptidase 846150..848177 Leifsonia xyli subsp. xyli str. CTCB07 2939970 YP_061848.1 CDS Lxx08430 NC_006087.1 848112 849617 R identified by sequence similarity; hypothetical protein complement(848112..849617) Leifsonia xyli subsp. xyli str. CTCB07 2938619 YP_061849.1 CDS Lxx08452 NC_006087.1 853644 853982 R identified by sequence similarity; hypothetical protein complement(853644..853982) Leifsonia xyli subsp. xyli str. CTCB07 2939774 YP_061850.1 CDS tnp NC_006087.1 855421 855786 R identified by sequence similarity; transposase, ISlxx4 complement(855421..855786) Leifsonia xyli subsp. xyli str. CTCB07 2938599 YP_061851.1 CDS nifR3 NC_006087.1 857561 858787 D identified by sequence similarity; NifR3/Smm1 family transcriptional regulator 857561..858787 Leifsonia xyli subsp. xyli str. CTCB07 2938910 YP_061852.1 CDS dgt NC_006087.1 858777 860039 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 858777..860039 Leifsonia xyli subsp. xyli str. CTCB07 2940232 YP_061853.1 CDS Lxx08510 NC_006087.1 860119 860928 D hypothetical protein 860119..860928 Leifsonia xyli subsp. xyli str. CTCB07 2940305 YP_061854.1 CDS dnaG NC_006087.1 860957 862819 D synthesizes RNA primers at the replication forks; DNA primase 860957..862819 Leifsonia xyli subsp. xyli str. CTCB07 2940030 YP_061855.1 CDS oppA NC_006087.1 863022 864638 D identified by sequence similarity; ABC transporter solute-binding protein 863022..864638 Leifsonia xyli subsp. xyli str. CTCB07 2940052 YP_061856.1 CDS dppB NC_006087.1 864732 865829 D identified by sequence similarity; ABC transporter permease 864732..865829 Leifsonia xyli subsp. xyli str. CTCB07 2939782 YP_061857.1 CDS dppC NC_006087.1 865912 866886 D identified by sequence similarity; ABC transporter permease 865912..866886 Leifsonia xyli subsp. xyli str. CTCB07 2938789 YP_061858.1 CDS dppD NC_006087.1 866883 868571 D identified by sequence similarity; ABC transporter ATP-binding protein 866883..868571 Leifsonia xyli subsp. xyli str. CTCB07 2938568 YP_061859.1 CDS oppF NC_006087.1 868581 869426 D identified by sequence similarity; oligopeptide transporter 868581..869426 Leifsonia xyli subsp. xyli str. CTCB07 2938318 YP_061860.1 CDS serA NC_006087.1 869554 870462 D identified by sequence similarity; phosphoglycerate dehydrogenase 869554..870462 Leifsonia xyli subsp. xyli str. CTCB07 2938445 YP_061861.1 CDS def NC_006087.1 871765 872331 R identified by sequence similarity; polypeptide deformylase complement(871765..872331) Leifsonia xyli subsp. xyli str. CTCB07 2939048 YP_061862.1 CDS Lxx08620 NC_006087.1 872403 873338 D identified by sequence similarity; hypothetical protein 872403..873338 Leifsonia xyli subsp. xyli str. CTCB07 2938816 YP_061863.1 CDS Lxx08630 NC_006087.1 873429 874685 D identified by sequence similarity; glucosyltransferase 873429..874685 Leifsonia xyli subsp. xyli str. CTCB07 2938769 YP_061864.1 CDS Lxx08650 NC_006087.1 874916 875401 R identified by sequence similarity; MutT-like domain-containing protein complement(874916..875401) Leifsonia xyli subsp. xyli str. CTCB07 2940068 YP_061865.1 CDS mutT3 NC_006087.1 875457 875936 D identified by sequence similarity; MutT/nudix family protein 875457..875936 Leifsonia xyli subsp. xyli str. CTCB07 2938820 YP_061866.1 CDS Lxx08670 NC_006087.1 876002 877714 D identified by sequence similarity; DNA polymerase I 876002..877714 Leifsonia xyli subsp. xyli str. CTCB07 2938432 YP_061867.1 CDS Lxx08680 NC_006087.1 877773 878624 D identified by sequence similarity; hypothetical protein 877773..878624 Leifsonia xyli subsp. xyli str. CTCB07 2939602 YP_061868.1 CDS Lxx08700 NC_006087.1 878637 879224 R identified by sequence similarity; PadR family transcriptional regulator complement(878637..879224) Leifsonia xyli subsp. xyli str. CTCB07 2940180 YP_061869.1 CDS Lxx08690 NC_006087.1 879393 879896 D identified by sequence similarity; hypothetical protein 879393..879896 Leifsonia xyli subsp. xyli str. CTCB07 2940507 YP_061870.1 CDS glbO NC_006087.1 880341 880748 R identified by sequence similarity; globin-like protein complement(880341..880748) Leifsonia xyli subsp. xyli str. CTCB07 2939811 YP_061871.1 CDS mscS NC_006087.1 880750 881922 R identified by sequence similarity; small-conductance mechanosensitive channel complement(880750..881922) Leifsonia xyli subsp. xyli str. CTCB07 2939126 YP_061872.1 CDS chiR NC_006087.1 881967 882644 R identified by sequence similarity; two-component system regulatory protein complement(881967..882644) Leifsonia xyli subsp. xyli str. CTCB07 2939991 YP_061873.1 CDS chiS NC_006087.1 882641 883753 R identified by sequence similarity; two-component system sensor protein complement(882641..883753) Leifsonia xyli subsp. xyli str. CTCB07 2940609 YP_061874.1 CDS Lxx08745 NC_006087.1 883912 884742 R identified by sequence similarity; ABC transporter integral membrane subunit complement(883912..884742) Leifsonia xyli subsp. xyli str. CTCB07 2940429 YP_061875.1 CDS spaF NC_006087.1 884739 885650 R identified by sequence similarity; ABC transporter ATP-binding protein complement(884739..885650) Leifsonia xyli subsp. xyli str. CTCB07 2939649 YP_061876.1 CDS pepN NC_006087.1 885760 888303 R identified by sequence similarity; aminopeptidase complement(885760..888303) Leifsonia xyli subsp. xyli str. CTCB07 2940416 YP_061877.1 CDS rpiB NC_006087.1 888410 888898 D catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 888410..888898 Leifsonia xyli subsp. xyli str. CTCB07 2939915 YP_061878.1 CDS Lxx08780 NC_006087.1 888898 889890 D identified by sequence similarity; DNA glycosylase 888898..889890 Leifsonia xyli subsp. xyli str. CTCB07 2939709 YP_061879.1 CDS Lxx08790 NC_006087.1 890065 890547 R identified by sequence similarity; starvation-induced DNA-binding protein complement(890065..890547) Leifsonia xyli subsp. xyli str. CTCB07 2938655 YP_061880.1 CDS proP NC_006087.1 890802 892346 D identified by sequence similarity; proline/betaine transporter 890802..892346 Leifsonia xyli subsp. xyli str. CTCB07 2939910 YP_061881.1 CDS Lxx08820 NC_006087.1 894890 895621 D identified by sequence similarity; phage-related integrase 894890..895621 Leifsonia xyli subsp. xyli str. CTCB07 2938656 YP_061882.1 CDS Lxx08825 NC_006087.1 895734 896048 D identified by sequence similarity; integrase 895734..896048 Leifsonia xyli subsp. xyli str. CTCB07 2939458 YP_061883.1 CDS Lxx08830 NC_006087.1 897480 897605 D hypothetical protein 897480..897605 Leifsonia xyli subsp. xyli str. CTCB07 2938666 YP_061884.1 CDS Lxx08840 NC_006087.1 899586 900551 D hypothetical protein 899586..900551 Leifsonia xyli subsp. xyli str. CTCB07 2939693 YP_061885.1 CDS Lxx08850 NC_006087.1 900553 901701 D identified by sequence similarity; phage-related integrase 900553..901701 Leifsonia xyli subsp. xyli str. CTCB07 2939349 YP_061886.1 CDS pitA NC_006087.1 904455 905669 D identified by sequence similarity; low-affinity phosphate transporter lipoprotein transmembrane 904455..905669 Leifsonia xyli subsp. xyli str. CTCB07 2939472 YP_061887.1 CDS Lxx08890 NC_006087.1 905666 905998 D hypothetical protein 905666..905998 Leifsonia xyli subsp. xyli str. CTCB07 2940110 YP_061888.1 CDS ycdG NC_006087.1 906005 907282 R identified by sequence similarity; xanthine/uracil permease complement(906005..907282) Leifsonia xyli subsp. xyli str. CTCB07 2938380 YP_061889.1 CDS Lxx08900 NC_006087.1 907430 908848 D identified by sequence similarity; xanthine/uracil permease 907430..908848 Leifsonia xyli subsp. xyli str. CTCB07 2939785 YP_061890.1 CDS micA NC_006087.1 908922 909605 D identified by sequence similarity; DNA mismatch repair protein 908922..909605 Leifsonia xyli subsp. xyli str. CTCB07 2940179 YP_061891.1 CDS aspA NC_006087.1 909996 911420 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 909996..911420 Leifsonia xyli subsp. xyli str. CTCB07 2940108 YP_061892.1 CDS Lxx08940 NC_006087.1 911652 912527 R identified by sequence similarity; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase complement(911652..912527) Leifsonia xyli subsp. xyli str. CTCB07 2939152 YP_061893.1 CDS Lxx08950 NC_006087.1 912653 914104 D identified by sequence similarity; FAD/FMN-containing dehydrogenase 912653..914104 Leifsonia xyli subsp. xyli str. CTCB07 2940342 YP_061894.1 CDS fkb NC_006087.1 914277 914660 D identified by sequence similarity; FKBP-type peptidylprolyl isomerase 914277..914660 Leifsonia xyli subsp. xyli str. CTCB07 2940431 YP_061895.1 CDS Lxx08980 NC_006087.1 915251 915856 D identified by sequence similarity; TetR family transcriptional regulator 915251..915856 Leifsonia xyli subsp. xyli str. CTCB07 2938955 YP_061896.1 CDS rpsO NC_006087.1 915994 916263 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 915994..916263 Leifsonia xyli subsp. xyli str. CTCB07 2939565 YP_061897.1 CDS Lxx09000 NC_006087.1 916338 916898 D identified by sequence similarity; hypothetical protein 916338..916898 Leifsonia xyli subsp. xyli str. CTCB07 2939236 YP_061898.1 CDS pnp NC_006087.1 919180 921465 D identified by sequence similarity; polynucleotide phosphorylase 919180..921465 Leifsonia xyli subsp. xyli str. CTCB07 2939599 YP_061899.1 CDS dapD NC_006087.1 921552 922550 R identified by sequence similarity; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(921552..922550) Leifsonia xyli subsp. xyli str. CTCB07 2938507 YP_061900.1 CDS dapE NC_006087.1 922568 923650 D catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase 922568..923650 Leifsonia xyli subsp. xyli str. CTCB07 2938913 YP_061901.1 CDS Lxx09060 NC_006087.1 923703 924866 D identified by sequence similarity; hypothetical protein 923703..924866 Leifsonia xyli subsp. xyli str. CTCB07 2940064 YP_061902.1 CDS Lxx09070 NC_006087.1 924934 925107 D identified by sequence similarity; hypothetical protein 924934..925107 Leifsonia xyli subsp. xyli str. CTCB07 2940066 YP_061903.1 CDS Lxx09080 NC_006087.1 925295 925927 R identified by sequence similarity; O-methyltransferase complement(925295..925927) Leifsonia xyli subsp. xyli str. CTCB07 2940168 YP_061904.1 CDS Lxx09100 NC_006087.1 926936 928231 D hypothetical protein 926936..928231 Leifsonia xyli subsp. xyli str. CTCB07 2938400 YP_061905.1 CDS Lxx09110 NC_006087.1 928303 929445 R identified by sequence similarity; chromosome partitioning protein complement(928303..929445) Leifsonia xyli subsp. xyli str. CTCB07 2939984 YP_061906.1 CDS Lxx09120 NC_006087.1 929438 929977 R identified by sequence similarity; hypothetical protein complement(929438..929977) Leifsonia xyli subsp. xyli str. CTCB07 2938947 YP_061907.1 CDS Lxx09130 NC_006087.1 929964 931283 R identified by sequence similarity; CBS domain-containing proteins complement(929964..931283) Leifsonia xyli subsp. xyli str. CTCB07 2938334 YP_061908.1 CDS Lxx09140 NC_006087.1 931296 931961 D identified by sequence similarity; hypothetical protein 931296..931961 Leifsonia xyli subsp. xyli str. CTCB07 2940375 YP_061909.1 CDS pepP NC_006087.1 931980 933596 R identified by sequence similarity; aminopeptidase complement(931980..933596) Leifsonia xyli subsp. xyli str. CTCB07 2940318 YP_061910.1 CDS Lxx09150 NC_006087.1 933603 934418 D identified by sequence similarity; hypothetical protein 933603..934418 Leifsonia xyli subsp. xyli str. CTCB07 2940078 YP_061911.1 CDS Lxx09155 NC_006087.1 934487 935614 D identified by sequence similarity; hypothetical protein 934487..935614 Leifsonia xyli subsp. xyli str. CTCB07 2940158 YP_061912.1 CDS rhlE NC_006087.1 935641 937116 R identified by sequence similarity; ATP-dependent RNA helicase complement(935641..937116) Leifsonia xyli subsp. xyli str. CTCB07 2939727 YP_061913.1 CDS Lxx09190 NC_006087.1 937239 937955 D identified by sequence similarity; hypothetical protein 937239..937955 Leifsonia xyli subsp. xyli str. CTCB07 2938271 YP_061914.1 CDS Lxx09200 NC_006087.1 938060 938362 R hypothetical protein complement(938060..938362) Leifsonia xyli subsp. xyli str. CTCB07 2938787 YP_061915.1 CDS Lxx09210 NC_006087.1 938373 938603 R identified by sequence similarity; hypothetical protein complement(938373..938603) Leifsonia xyli subsp. xyli str. CTCB07 2939681 YP_061916.1 CDS Lxx09220 NC_006087.1 938696 941827 D identified by sequence similarity; ATP-dependent DNA helicase 938696..941827 Leifsonia xyli subsp. xyli str. CTCB07 2940272 YP_061917.1 CDS Lxx09230 NC_006087.1 941854 945231 D identified by sequence similarity; ATP-dependent DNA helicase 941854..945231 Leifsonia xyli subsp. xyli str. CTCB07 2940359 YP_061918.1 CDS mphA NC_006087.1 946061 947110 R identified by sequence similarity; macrolide 2'-phosphotransferase complement(946061..947110) Leifsonia xyli subsp. xyli str. CTCB07 2939967 YP_061919.1 CDS nudC NC_006087.1 947172 948191 D identified by sequence similarity; NADH pyrophosphatase 947172..948191 Leifsonia xyli subsp. xyli str. CTCB07 2939116 YP_061920.1 CDS Lxx09260 NC_006087.1 948188 949900 D identified by sequence similarity; ATP-dependent DNA helicase II 948188..949900 Leifsonia xyli subsp. xyli str. CTCB07 2939093 YP_061921.1 CDS Lxx09270 NC_006087.1 950159 950677 R hypothetical protein complement(950159..950677) Leifsonia xyli subsp. xyli str. CTCB07 2940371 YP_061922.1 CDS Lxx09280 NC_006087.1 950764 952107 R identified by sequence similarity; hypothetical protein complement(950764..952107) Leifsonia xyli subsp. xyli str. CTCB07 2939773 YP_061923.1 CDS Lxx09290 NC_006087.1 952272 953435 D identified by sequence similarity; secreted protein 952272..953435 Leifsonia xyli subsp. xyli str. CTCB07 2940440 YP_061924.1 CDS Lxx09300 NC_006087.1 953546 956509 D identified by sequence similarity; hypothetical protein 953546..956509 Leifsonia xyli subsp. xyli str. CTCB07 2940396 YP_061925.1 CDS Lxx09320 NC_006087.1 956835 957929 D identified by sequence similarity; hypothetical protein 956835..957929 Leifsonia xyli subsp. xyli str. CTCB07 2940208 YP_061926.1 CDS Lxx09350 NC_006087.1 958934 959677 D identified by sequence similarity; hypothetical protein 958934..959677 Leifsonia xyli subsp. xyli str. CTCB07 2940348 YP_061927.1 CDS Lxx09360 NC_006087.1 959826 960218 D identified by sequence similarity; two-component system regulatory protein 959826..960218 Leifsonia xyli subsp. xyli str. CTCB07 2940523 YP_061928.1 CDS tnp NC_006087.1 961837 963048 D identified by sequence similarity; transposase, ISlxx5 961837..963048 Leifsonia xyli subsp. xyli str. CTCB07 2939491 YP_061929.1 CDS Lxx09410 NC_006087.1 964467 964955 D identified by sequence similarity; MarR family transcriptional regulator 964467..964955 Leifsonia xyli subsp. xyli str. CTCB07 2939392 YP_061930.1 CDS Lxx09440 NC_006087.1 967125 967346 D identified by sequence similarity; hypothetical protein 967125..967346 Leifsonia xyli subsp. xyli str. CTCB07 2938654 YP_061931.1 CDS Lxx09445 NC_006087.1 967349 967813 R identified by sequence similarity; MarR family transcriptional regulator complement(967349..967813) Leifsonia xyli subsp. xyli str. CTCB07 2938533 YP_061932.1 CDS Lxx09450 NC_006087.1 967908 968903 D identified by sequence similarity; hypothetical protein 967908..968903 Leifsonia xyli subsp. xyli str. CTCB07 2939886 YP_061933.1 CDS Lxx09460 NC_006087.1 970254 970532 D hypothetical protein 970254..970532 Leifsonia xyli subsp. xyli str. CTCB07 2938911 YP_061934.1 CDS csd NC_006087.1 971729 973009 D identified by sequence similarity; cysteine desulfurase 971729..973009 Leifsonia xyli subsp. xyli str. CTCB07 2939138 YP_061935.1 CDS nifU NC_006087.1 973006 973446 D identified by sequence similarity; NifU-like protein 973006..973446 Leifsonia xyli subsp. xyli str. CTCB07 2940151 YP_061936.1 CDS opuAB NC_006087.1 976139 977854 D identified by sequence similarity; ABC-type glycine betaine transport, permease 976139..977854 Leifsonia xyli subsp. xyli str. CTCB07 2939738 YP_061937.1 CDS phrB NC_006087.1 978027 979427 R identified by sequence similarity; DNA photolyase complement(978027..979427) Leifsonia xyli subsp. xyli str. CTCB07 2938817 YP_061938.1 CDS Lxx09580 NC_006087.1 980849 981457 D identified by sequence similarity; hypothetical protein 980849..981457 Leifsonia xyli subsp. xyli str. CTCB07 2938427 YP_061939.1 CDS Lxx09600 NC_006087.1 983053 984318 D identified by sequence similarity; two-component system sensor protein 983053..984318 Leifsonia xyli subsp. xyli str. CTCB07 2939983 YP_061940.1 CDS Lxx09610 NC_006087.1 984350 984961 D identified by sequence similarity; two-component system regulatory protein 984350..984961 Leifsonia xyli subsp. xyli str. CTCB07 2938390 YP_061941.1 CDS Lxx09620 NC_006087.1 985045 986211 D identified by sequence similarity; hypothetical protein 985045..986211 Leifsonia xyli subsp. xyli str. CTCB07 2939656 YP_061942.1 CDS Lxx09630 NC_006087.1 986504 987553 D identified by sequence similarity; membrane protein, tellurium resistance 986504..987553 Leifsonia xyli subsp. xyli str. CTCB07 2939688 YP_061943.1 CDS leuC NC_006087.1 988485 989945 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 988485..989945 Leifsonia xyli subsp. xyli str. CTCB07 2939615 YP_061944.1 CDS leuD NC_006087.1 989945 990544 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 989945..990544 Leifsonia xyli subsp. xyli str. CTCB07 2940185 YP_061945.1 CDS murA NC_006087.1 990541 991911 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 990541..991911 Leifsonia xyli subsp. xyli str. CTCB07 2940343 YP_061946.1 CDS plsC NC_006087.1 991931 992695 D identified by sequence similarity; 1-acylglycerol-3-phosphate O-acyltransferase 991931..992695 Leifsonia xyli subsp. xyli str. CTCB07 2939580 YP_061947.1 CDS gpsA NC_006087.1 992736 993845 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 992736..993845 Leifsonia xyli subsp. xyli str. CTCB07 2939234 YP_061948.1 CDS ddlA NC_006087.1 993940 994833 D identified by sequence similarity; D-alanine:D-alanine ligase 993940..994833 Leifsonia xyli subsp. xyli str. CTCB07 2939415 YP_061949.1 CDS Lxx09730 NC_006087.1 994844 995344 R identified by sequence similarity; secreted protein complement(994844..995344) Leifsonia xyli subsp. xyli str. CTCB07 2940327 YP_061950.1 CDS thiL NC_006087.1 995370 996365 D identified by sequence similarity; thiamine-monophosphate kinase 995370..996365 Leifsonia xyli subsp. xyli str. CTCB07 2938424 YP_061951.1 CDS Lxx09740 NC_006087.1 996379 996951 R identified by sequence similarity; DNA methyltransferase complement(996379..996951) Leifsonia xyli subsp. xyli str. CTCB07 2939098 YP_061952.1 CDS recG NC_006087.1 997029 999248 D identified by sequence similarity; ATP-dependent DNA helicase RecG 997029..999248 Leifsonia xyli subsp. xyli str. CTCB07 2938580 YP_061953.1 CDS coaD NC_006087.1 999335 999814 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 999335..999814 Leifsonia xyli subsp. xyli str. CTCB07 2940190 YP_061954.1 CDS Lxx09770 NC_006087.1 1000020 1000604 D identified by sequence similarity; hypothetical protein 1000020..1000604 Leifsonia xyli subsp. xyli str. CTCB07 2938308 YP_061955.1 CDS rpmF NC_006087.1 1000607 1000810 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1000607..1000810 Leifsonia xyli subsp. xyli str. CTCB07 2938442 YP_061956.1 CDS rnc NC_006087.1 1000822 1001535 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1000822..1001535 Leifsonia xyli subsp. xyli str. CTCB07 2938919 YP_061957.1 CDS mutM NC_006087.1 1001513 1002406 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1001513..1002406 Leifsonia xyli subsp. xyli str. CTCB07 2939806 YP_061958.1 CDS Lxx09812 NC_006087.1 1003098 1003409 D identified by sequence similarity; hypothetical protein 1003098..1003409 Leifsonia xyli subsp. xyli str. CTCB07 2939391 YP_061959.1 CDS qcrB NC_006087.1 1004979 1006598 R identified by sequence similarity; ubiquinol-cytochrome C reductase cytochrome B subunit complement(1004979..1006598) Leifsonia xyli subsp. xyli str. CTCB07 2940545 YP_061960.1 CDS qcrA NC_006087.1 1006595 1007608 R identified by sequence similarity; Rieske iron-sulfur component of ubiQ-cytB reductase complement(1006595..1007608) Leifsonia xyli subsp. xyli str. CTCB07 2938572 YP_061961.1 CDS qcrC NC_006087.1 1007717 1008559 R identified by sequence similarity; ubiquinol-cytochrome C reductase cytochrome C subunit complement(1007717..1008559) Leifsonia xyli subsp. xyli str. CTCB07 2939990 YP_061962.1 CDS ctaE NC_006087.1 1008583 1009218 R identified by sequence similarity; cytochrome C oxidase subunit III complement(1008583..1009218) Leifsonia xyli subsp. xyli str. CTCB07 2939710 YP_061963.1 CDS trpD NC_006087.1 1009360 1010409 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1009360..1010409 Leifsonia xyli subsp. xyli str. CTCB07 2939928 YP_061964.1 CDS dak1 NC_006087.1 1010451 1011440 D identified by sequence similarity; dihydroxyacetone kinase 1010451..1011440 Leifsonia xyli subsp. xyli str. CTCB07 2939402 YP_061965.1 CDS dak2 NC_006087.1 1011471 1012103 D identified by sequence similarity; dihydroxyacetone kinase 1011471..1012103 Leifsonia xyli subsp. xyli str. CTCB07 2939625 YP_061966.1 CDS hpr NC_006087.1 1012100 1012810 D identified by sequence similarity; PTS system enzyme I 1012100..1012810 Leifsonia xyli subsp. xyli str. CTCB07 2939647 YP_061967.1 CDS aspC NC_006087.1 1012977 1014266 R identified by sequence similarity; aspartate transaminase complement(1012977..1014266) Leifsonia xyli subsp. xyli str. CTCB07 2938946 YP_061968.1 CDS Lxx09900 NC_006087.1 1014328 1014972 D identified by sequence similarity; hypothetical protein 1014328..1014972 Leifsonia xyli subsp. xyli str. CTCB07 2940013 YP_061969.1 CDS folA NC_006087.1 1014965 1015444 R identified by sequence similarity; dihydrofolate reductase complement(1014965..1015444) Leifsonia xyli subsp. xyli str. CTCB07 2939078 YP_061970.1 CDS thyA NC_006087.1 1015441 1016250 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1015441..1016250) Leifsonia xyli subsp. xyli str. CTCB07 2939820 YP_061971.1 CDS Lxx09940 NC_006087.1 1016376 1017203 D identified by sequence similarity; hypothetical protein 1016376..1017203 Leifsonia xyli subsp. xyli str. CTCB07 2938653 YP_061972.1 CDS Lxx09950 NC_006087.1 1017232 1017966 D identified by sequence similarity; hypothetical protein 1017232..1017966 Leifsonia xyli subsp. xyli str. CTCB07 2938729 YP_061973.1 CDS glk NC_006087.1 1018467 1019219 R identified by sequence similarity; glucokinase complement(1018467..1019219) Leifsonia xyli subsp. xyli str. CTCB07 2939088 YP_061974.1 CDS ampM NC_006087.1 1019313 1020179 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1019313..1020179) Leifsonia xyli subsp. xyli str. CTCB07 2939411 YP_061975.1 CDS Lxx09990 NC_006087.1 1020514 1020777 R hypothetical protein complement(1020514..1020777) Leifsonia xyli subsp. xyli str. CTCB07 2938302 YP_061976.1 CDS panB NC_006087.1 1021131 1021964 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1021131..1021964) Leifsonia xyli subsp. xyli str. CTCB07 2938797 YP_061977.1 CDS glnA NC_006087.1 1022030 1023367 D identified by sequence similarity; glutamine synthetase 1022030..1023367 Leifsonia xyli subsp. xyli str. CTCB07 2940225 YP_061978.1 CDS glnE NC_006087.1 1023407 1026430 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 1023407..1026430 Leifsonia xyli subsp. xyli str. CTCB07 2938393 YP_061979.1 CDS tnp NC_006087.1 1028337 1029548 D identified by sequence similarity; transposase, ISlxx5 1028337..1029548 Leifsonia xyli subsp. xyli str. CTCB07 2940551 YP_061980.1 CDS glnA NC_006087.1 1029620 1031044 R identified by sequence similarity; glutamine synthetase complement(1029620..1031044) Leifsonia xyli subsp. xyli str. CTCB07 2939637 YP_061981.1 CDS Lxx10090 NC_006087.1 1031993 1032418 D identified by sequence similarity; hypothetical protein 1031993..1032418 Leifsonia xyli subsp. xyli str. CTCB07 2939719 YP_061982.1 CDS Lxx10100 NC_006087.1 1032533 1033231 R identified by sequence similarity; hypothetical protein complement(1032533..1033231) Leifsonia xyli subsp. xyli str. CTCB07 2939545 YP_061983.1 CDS lipA NC_006087.1 1033319 1034308 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1033319..1034308) Leifsonia xyli subsp. xyli str. CTCB07 2939446 YP_061984.1 CDS lipB NC_006087.1 1034305 1034979 R lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase complement(1034305..1034979) Leifsonia xyli subsp. xyli str. CTCB07 2938822 YP_061985.1 CDS Lxx10120 NC_006087.1 1034991 1036472 D identified by sequence similarity; hypothetical protein 1034991..1036472 Leifsonia xyli subsp. xyli str. CTCB07 2939520 YP_061986.1 CDS pdhB NC_006087.1 1036520 1037932 R identified by sequence similarity; dihydrolipoamide acetyltransferase complement(1036520..1037932) Leifsonia xyli subsp. xyli str. CTCB07 2938747 YP_061987.1 CDS Lxx10150 NC_006087.1 1038019 1039392 R E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1038019..1039392) Leifsonia xyli subsp. xyli str. CTCB07 2940595 YP_061988.1 CDS pep NC_006087.1 1039497 1040987 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1039497..1040987) Leifsonia xyli subsp. xyli str. CTCB07 2938372 YP_061989.1 CDS Lxx10170 NC_006087.1 1041091 1042020 D identified by sequence similarity; hypothetical protein 1041091..1042020 Leifsonia xyli subsp. xyli str. CTCB07 2939740 YP_061990.1 CDS Lxx10180 NC_006087.1 1042057 1043307 D identified by sequence similarity; major facilitator superfamily permease 1042057..1043307 Leifsonia xyli subsp. xyli str. CTCB07 2940071 YP_061991.1 CDS hrdB NC_006087.1 1043578 1044900 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 1043578..1044900 Leifsonia xyli subsp. xyli str. CTCB07 2938978 YP_061992.1 CDS murC NC_006087.1 1044905 1046179 D identified by sequence similarity; UDP-N-acetylmuramyl tripeptide synthetase 1044905..1046179 Leifsonia xyli subsp. xyli str. CTCB07 2939457 YP_061993.1 CDS cobQ NC_006087.1 1046176 1046892 D identified by sequence similarity; cobyric acid synthase 1046176..1046892 Leifsonia xyli subsp. xyli str. CTCB07 2938252 YP_061994.1 CDS Lxx10220 NC_006087.1 1046916 1048370 R identified by sequence similarity; opine oxidase subunit A complement(1046916..1048370) Leifsonia xyli subsp. xyli str. CTCB07 2939503 YP_061995.1 CDS Lxx10230 NC_006087.1 1048372 1048698 R identified by sequence similarity; hypothetical protein complement(1048372..1048698) Leifsonia xyli subsp. xyli str. CTCB07 2939917 YP_061996.1 CDS dapA NC_006087.1 1049885 1050817 R identified by sequence similarity; dihydrodipicolinate synthase complement(1049885..1050817) Leifsonia xyli subsp. xyli str. CTCB07 2940583 YP_061997.1 CDS nhaC NC_006087.1 1050864 1052336 R identified by sequence similarity; Na+/H+ antiporter complement(1050864..1052336) Leifsonia xyli subsp. xyli str. CTCB07 2938972 YP_061998.1 CDS Lxx10290 NC_006087.1 1052523 1053077 D identified by sequence similarity; transcriptional regulator 1052523..1053077 Leifsonia xyli subsp. xyli str. CTCB07 2938828 YP_061999.1 CDS Lxx10300 NC_006087.1 1053103 1053438 D hypothetical protein 1053103..1053438 Leifsonia xyli subsp. xyli str. CTCB07 2939418 YP_062000.1 CDS Lxx10310 NC_006087.1 1053435 1053527 D hypothetical protein 1053435..1053527 Leifsonia xyli subsp. xyli str. CTCB07 2939884 YP_062001.1 CDS alr NC_006087.1 1053573 1054685 R identified by sequence similarity; alanine racemase complement(1053573..1054685) Leifsonia xyli subsp. xyli str. CTCB07 2939106 YP_062002.1 CDS alr NC_006087.1 1054682 1055392 R identified by sequence similarity; alanine racemase complement(1054682..1055392) Leifsonia xyli subsp. xyli str. CTCB07 2939766 YP_062003.1 CDS Lxx10335 NC_006087.1 1055428 1055664 R identified by sequence similarity; hypothetical protein complement(1055428..1055664) Leifsonia xyli subsp. xyli str. CTCB07 2938949 YP_062004.1 CDS gyrB NC_006087.1 1055878 1057962 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1055878..1057962 Leifsonia xyli subsp. xyli str. CTCB07 2938796 YP_062005.1 CDS gyrA NC_006087.1 1058029 1060500 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1058029..1060500) Leifsonia xyli subsp. xyli str. CTCB07 2939382 YP_062006.1 CDS Lxx10365 NC_006087.1 1060558 1061691 D identified by sequence similarity; hypothetical protein 1060558..1061691 Leifsonia xyli subsp. xyli str. CTCB07 2938709 YP_062007.1 CDS Lxx10370 NC_006087.1 1061705 1062802 R identified by sequence similarity; DNA-binding protein complement(1061705..1062802) Leifsonia xyli subsp. xyli str. CTCB07 2939108 YP_062008.1 CDS Lxx10380 NC_006087.1 1063003 1063302 D identified by sequence similarity; hypothetical protein 1063003..1063302 Leifsonia xyli subsp. xyli str. CTCB07 2938342 YP_062009.1 CDS Lxx10400 NC_006087.1 1063315 1063761 R identified by sequence similarity; hypothetical protein complement(1063315..1063761) Leifsonia xyli subsp. xyli str. CTCB07 2940384 YP_062010.1 CDS dut NC_006087.1 1063802 1064260 D identified by sequence similarity; deoxyuridine 5'-triphosphate nucleotidohydrolase 1063802..1064260 Leifsonia xyli subsp. xyli str. CTCB07 2938667 YP_062011.1 CDS Lxx10410 NC_006087.1 1064398 1064901 D identified by sequence similarity; hypothetical protein 1064398..1064901 Leifsonia xyli subsp. xyli str. CTCB07 2939311 YP_062012.1 CDS Lxx10420 NC_006087.1 1064910 1065668 D identified by sequence similarity; hypothetical protein 1064910..1065668 Leifsonia xyli subsp. xyli str. CTCB07 2938310 YP_062013.1 CDS Lxx10430 NC_006087.1 1065715 1068096 D identified by sequence similarity; Mn/Cd2+-ATPase, MntA 1065715..1068096 Leifsonia xyli subsp. xyli str. CTCB07 2938918 YP_062014.1 CDS Lxx10440 NC_006087.1 1068197 1071079 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1068197..1071079 Leifsonia xyli subsp. xyli str. CTCB07 2939694 YP_062015.1 CDS dxs NC_006087.1 1071157 1073109 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1071157..1073109 Leifsonia xyli subsp. xyli str. CTCB07 2939756 YP_062016.1 CDS fadB NC_006087.1 1074359 1076497 R identified by sequence similarity; 3-hydroxyacyl-CoA dehydrogenase complement(1074359..1076497) Leifsonia xyli subsp. xyli str. CTCB07 2939315 YP_062017.1 CDS atoB NC_006087.1 1076505 1077731 R identified by sequence similarity; acetyl-CoA acetyltransferase complement(1076505..1077731) Leifsonia xyli subsp. xyli str. CTCB07 2939462 YP_062018.1 CDS Lxx10490 NC_006087.1 1077802 1078998 R identified by sequence similarity; ribonuclease complement(1077802..1078998) Leifsonia xyli subsp. xyli str. CTCB07 2939736 YP_062019.1 CDS Lxx10500 NC_006087.1 1078991 1079587 R identified by sequence similarity; hypothetical protein complement(1078991..1079587) Leifsonia xyli subsp. xyli str. CTCB07 2939094 YP_062020.1 CDS Lxx10540 NC_006087.1 1080850 1081290 R identified by sequence similarity; hypothetical protein complement(1080850..1081290) Leifsonia xyli subsp. xyli str. CTCB07 2939532 YP_062021.1 CDS sseA NC_006087.1 1081287 1082180 R identified by sequence similarity; thiosulfate sulfurtransferase complement(1081287..1082180) Leifsonia xyli subsp. xyli str. CTCB07 2938717 YP_062022.1 CDS Lxx10560 NC_006087.1 1082305 1083357 D identified by sequence similarity; ATP/GTP-binding integral membrane protein 1082305..1083357 Leifsonia xyli subsp. xyli str. CTCB07 2938412 YP_062023.1 CDS amt NC_006087.1 1083569 1084840 D identified by sequence similarity; ammonium transporter 1083569..1084840 Leifsonia xyli subsp. xyli str. CTCB07 2939912 YP_062024.1 CDS amt NC_006087.1 1085054 1086244 D identified by sequence similarity; ammonium transporter 1085054..1086244 Leifsonia xyli subsp. xyli str. CTCB07 2939964 YP_062025.1 CDS Lxx10605 NC_006087.1 1088437 1088883 D identified by sequence similarity; MutT-like domain-containing protein 1088437..1088883 Leifsonia xyli subsp. xyli str. CTCB07 2939843 YP_062026.1 CDS Lxx10660 NC_006087.1 1090093 1090275 D identified by sequence similarity; hypothetical protein 1090093..1090275 Leifsonia xyli subsp. xyli str. CTCB07 2939486 YP_062027.1 CDS thrS NC_006087.1 1091326 1093413 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1091326..1093413 Leifsonia xyli subsp. xyli str. CTCB07 2940596 YP_062028.1 CDS Lxx10700 NC_006087.1 1093473 1094027 D identified by sequence similarity; hypothetical protein 1093473..1094027 Leifsonia xyli subsp. xyli str. CTCB07 2940549 YP_062029.1 CDS pdxY NC_006087.1 1094058 1094909 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(1094058..1094909) Leifsonia xyli subsp. xyli str. CTCB07 2939540 YP_062030.1 CDS Lxx10730 NC_006087.1 1094906 1096255 R identified by sequence similarity; GntR family transcriptional regulator complement(1094906..1096255) Leifsonia xyli subsp. xyli str. CTCB07 2939934 YP_062031.1 CDS Lxx10720 NC_006087.1 1096325 1097224 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 1096325..1097224 Leifsonia xyli subsp. xyli str. CTCB07 2940340 YP_062032.1 CDS Lxx10740 NC_006087.1 1097214 1097810 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 1097214..1097810 Leifsonia xyli subsp. xyli str. CTCB07 2938473 YP_062033.1 CDS Lxx10750 NC_006087.1 1097875 1098633 D identified by sequence similarity; hypothetical protein 1097875..1098633 Leifsonia xyli subsp. xyli str. CTCB07 2939430 YP_062034.1 CDS ruvC NC_006087.1 1098646 1099272 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1098646..1099272 Leifsonia xyli subsp. xyli str. CTCB07 2938347 YP_062035.1 CDS ruvA NC_006087.1 1099269 1099892 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1099269..1099892 Leifsonia xyli subsp. xyli str. CTCB07 2939762 YP_062036.1 CDS ruvB NC_006087.1 1099889 1100932 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1099889..1100932 Leifsonia xyli subsp. xyli str. CTCB07 2939921 YP_062037.1 CDS yajC NC_006087.1 1101004 1101405 D identified by sequence similarity; preprotein translocase subunit YajC 1101004..1101405 Leifsonia xyli subsp. xyli str. CTCB07 2939376 YP_062038.1 CDS secD NC_006087.1 1101536 1103203 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1101536..1103203 Leifsonia xyli subsp. xyli str. CTCB07 2940270 YP_062039.1 CDS secF NC_006087.1 1103203 1104219 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1103203..1104219 Leifsonia xyli subsp. xyli str. CTCB07 2940105 YP_062040.1 CDS glpE NC_006087.1 1104259 1104582 D identified by sequence similarity; thiosulfate sulfurtransferase 1104259..1104582 Leifsonia xyli subsp. xyli str. CTCB07 2938415 YP_062041.1 CDS relA NC_006087.1 1104647 1106923 D identified by sequence similarity; GTP pyrophosphokinase 1104647..1106923 Leifsonia xyli subsp. xyli str. CTCB07 2938261 YP_062042.1 CDS Lxx10840 NC_006087.1 1106910 1107428 R identified by sequence similarity; hypothetical protein complement(1106910..1107428) Leifsonia xyli subsp. xyli str. CTCB07 2938584 YP_062043.1 CDS Lxx10850 NC_006087.1 1107611 1108849 R identified by sequence similarity; DNA repair ATPase complement(1107611..1108849) Leifsonia xyli subsp. xyli str. CTCB07 2940036 YP_062044.1 CDS ppiB NC_006087.1 1108898 1109536 R identified by sequence similarity; peptidyl-prolyl cis-trans isomerase B complement(1108898..1109536) Leifsonia xyli subsp. xyli str. CTCB07 2939808 YP_062045.1 CDS Lxx10870 NC_006087.1 1109786 1111126 D identified by sequence similarity; recombination factor protein RarA 1109786..1111126 Leifsonia xyli subsp. xyli str. CTCB07 2940432 YP_062046.1 CDS rpsD NC_006087.1 1111310 1111933 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1111310..1111933 Leifsonia xyli subsp. xyli str. CTCB07 2938540 YP_062047.1 CDS Lxx10890 NC_006087.1 1112042 1112419 D identified by sequence similarity; secreted protein 1112042..1112419 Leifsonia xyli subsp. xyli str. CTCB07 2940115 YP_062048.1 CDS Lxx10900 NC_006087.1 1112481 1112672 D identified by sequence similarity; hypothetical protein 1112481..1112672 Leifsonia xyli subsp. xyli str. CTCB07 2939707 YP_062049.1 CDS alaS NC_006087.1 1112717 1115374 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1112717..1115374 Leifsonia xyli subsp. xyli str. CTCB07 2938703 YP_062050.1 CDS Lxx10920 NC_006087.1 1115378 1115845 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1115378..1115845 Leifsonia xyli subsp. xyli str. CTCB07 2939701 YP_062051.1 CDS Lxx10930 NC_006087.1 1116633 1117376 D identified by sequence similarity; hypothetical protein 1116633..1117376 Leifsonia xyli subsp. xyli str. CTCB07 2939768 YP_062052.1 CDS aroE NC_006087.1 1117834 1118919 D identified by sequence similarity; shikimate 5-dehydrogenase 1117834..1118919 Leifsonia xyli subsp. xyli str. CTCB07 2939287 YP_062053.1 CDS aroC NC_006087.1 1118961 1120169 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1118961..1120169 Leifsonia xyli subsp. xyli str. CTCB07 2939348 YP_062054.1 CDS aroK NC_006087.1 1120210 1120710 D identified by sequence similarity; shikimate kinase I 1120210..1120710 Leifsonia xyli subsp. xyli str. CTCB07 2938277 YP_062055.1 CDS aroB NC_006087.1 1120707 1121786 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1120707..1121786 Leifsonia xyli subsp. xyli str. CTCB07 2939951 YP_062056.1 CDS Lxx10980 NC_006087.1 1121897 1122124 D hypothetical protein 1121897..1122124 Leifsonia xyli subsp. xyli str. CTCB07 2940614 YP_062057.1 CDS aroD NC_006087.1 1122121 1122567 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1122121..1122567 Leifsonia xyli subsp. xyli str. CTCB07 2940253 YP_062058.1 CDS efp NC_006087.1 1122670 1123233 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1122670..1123233 Leifsonia xyli subsp. xyli str. CTCB07 2940532 YP_062059.1 CDS nusB NC_006087.1 1123233 1123667 D identified by sequence similarity; transcription termination factor 1123233..1123667 Leifsonia xyli subsp. xyli str. CTCB07 2940494 YP_062060.1 CDS Lxx11020 NC_006087.1 1123664 1124371 D shows similarity to disulfide isomerases; hypothetical protein 1123664..1124371 Leifsonia xyli subsp. xyli str. CTCB07 2939572 YP_062061.1 CDS Lxx11050 NC_006087.1 1130858 1131409 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1130858..1131409 Leifsonia xyli subsp. xyli str. CTCB07 2938301 YP_062062.1 CDS pyrB NC_006087.1 1131406 1132353 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 1131406..1132353 Leifsonia xyli subsp. xyli str. CTCB07 2938251 YP_062063.1 CDS pyrC NC_006087.1 1132371 1133687 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1132371..1133687 Leifsonia xyli subsp. xyli str. CTCB07 2940482 YP_062064.1 CDS Lxx11080 NC_006087.1 1133774 1134205 D hypothetical protein 1133774..1134205 Leifsonia xyli subsp. xyli str. CTCB07 2940426 YP_062065.1 CDS carA NC_006087.1 1134195 1135358 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1134195..1135358 Leifsonia xyli subsp. xyli str. CTCB07 2939218 YP_062066.1 CDS carB NC_006087.1 1135358 1138639 D identified by sequence similarity; carbamoylphosphate synthase, large chain 1135358..1138639 Leifsonia xyli subsp. xyli str. CTCB07 2938244 YP_062067.1 CDS pyrF NC_006087.1 1138636 1139514 D identified by sequence similarity; orotidine 5'-phosphate decarboxylase 1138636..1139514 Leifsonia xyli subsp. xyli str. CTCB07 2940329 YP_062068.1 CDS gmk NC_006087.1 1139705 1140469 D identified by sequence similarity; guanylate kinase 1139705..1140469 Leifsonia xyli subsp. xyli str. CTCB07 2939739 YP_062069.1 CDS rpoZ NC_006087.1 1140558 1140821 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1140558..1140821 Leifsonia xyli subsp. xyli str. CTCB07 2939919 YP_062070.1 CDS dfp NC_006087.1 1140908 1142203 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1140908..1142203 Leifsonia xyli subsp. xyli str. CTCB07 2938675 YP_062071.1 CDS metK NC_006087.1 1142245 1143438 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1142245..1143438 Leifsonia xyli subsp. xyli str. CTCB07 2939319 YP_062072.1 CDS priA NC_006087.1 1143441 1145414 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1143441..1145414 Leifsonia xyli subsp. xyli str. CTCB07 2938933 YP_062073.1 CDS fmt NC_006087.1 1145464 1146372 D identified by sequence similarity; methionyl-tRNA formyltransferase 1145464..1146372 Leifsonia xyli subsp. xyli str. CTCB07 2939085 YP_062074.1 CDS Lxx11200 NC_006087.1 1147897 1148559 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1147897..1148559 Leifsonia xyli subsp. xyli str. CTCB07 2939413 YP_062075.1 CDS hisE NC_006087.1 1148562 1148825 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 1148562..1148825 Leifsonia xyli subsp. xyli str. CTCB07 2939136 YP_062076.1 CDS hisG NC_006087.1 1148874 1149713 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1148874..1149713 Leifsonia xyli subsp. xyli str. CTCB07 2940476 YP_062077.1 CDS hisF NC_006087.1 1149713 1150477 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1149713..1150477 Leifsonia xyli subsp. xyli str. CTCB07 2938800 YP_062078.1 CDS hisI NC_006087.1 1150474 1150851 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 1150474..1150851 Leifsonia xyli subsp. xyli str. CTCB07 2940438 YP_062079.1 CDS trpE NC_006087.1 1150899 1152458 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1150899..1152458 Leifsonia xyli subsp. xyli str. CTCB07 2938930 YP_062080.1 CDS Lxx11260 NC_006087.1 1152448 1153146 D identified by sequence similarity; hypothetical protein 1152448..1153146 Leifsonia xyli subsp. xyli str. CTCB07 2940408 YP_062081.1 CDS Lxx11270 NC_006087.1 1153240 1153476 D identified by sequence similarity; mambrane protein 1153240..1153476 Leifsonia xyli subsp. xyli str. CTCB07 2939242 YP_062082.1 CDS trpC NC_006087.1 1153481 1154263 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 1153481..1154263 Leifsonia xyli subsp. xyli str. CTCB07 2938292 YP_062083.1 CDS trpB NC_006087.1 1154263 1155474 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1154263..1155474 Leifsonia xyli subsp. xyli str. CTCB07 2940182 YP_062084.1 CDS trpA NC_006087.1 1155471 1156256 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1155471..1156256 Leifsonia xyli subsp. xyli str. CTCB07 2939640 YP_062085.1 CDS lgt NC_006087.1 1156338 1157342 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1156338..1157342 Leifsonia xyli subsp. xyli str. CTCB07 2938579 YP_062086.1 CDS gltB NC_006087.1 1157498 1162075 D identified by sequence similarity; glutamate synthase subunit alpha 1157498..1162075 Leifsonia xyli subsp. xyli str. CTCB07 2939904 YP_062087.1 CDS gltD NC_006087.1 1162118 1163575 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1162118..1163575 Leifsonia xyli subsp. xyli str. CTCB07 2939505 YP_062088.1 CDS pyk NC_006087.1 1163640 1165106 D identified by sequence similarity; pyruvate kinase II 1163640..1165106 Leifsonia xyli subsp. xyli str. CTCB07 2939927 YP_062089.1 CDS Lxx11350 NC_006087.1 1165157 1165918 R identified by sequence similarity; hypothetical protein complement(1165157..1165918) Leifsonia xyli subsp. xyli str. CTCB07 2940351 YP_062090.1 CDS Lxx11360 NC_006087.1 1166169 1166963 R hypothetical protein complement(1166169..1166963) Leifsonia xyli subsp. xyli str. CTCB07 2940598 YP_062091.1 CDS Lxx11370 NC_006087.1 1167328 1167462 D hypothetical protein 1167328..1167462 Leifsonia xyli subsp. xyli str. CTCB07 2939869 YP_062092.1 CDS Lxx11390 NC_006087.1 1168594 1169199 D identified by sequence similarity; two-component system regulatory protein 1168594..1169199 Leifsonia xyli subsp. xyli str. CTCB07 2940207 YP_062093.1 CDS Lxx11400 NC_006087.1 1169269 1169673 R identified by sequence similarity; hypothetical protein complement(1169269..1169673) Leifsonia xyli subsp. xyli str. CTCB07 2940280 YP_062094.1 CDS polA NC_006087.1 1169741 1172428 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1169741..1172428 Leifsonia xyli subsp. xyli str. CTCB07 2938262 YP_062095.1 CDS Lxx11420 NC_006087.1 1172459 1174132 D identified by sequence similarity; hypothetical protein 1172459..1174132 Leifsonia xyli subsp. xyli str. CTCB07 2939675 YP_062096.1 CDS rpsA NC_006087.1 1174526 1175968 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1174526..1175968 Leifsonia xyli subsp. xyli str. CTCB07 2938355 YP_062097.1 CDS Lxx11440 NC_006087.1 1176081 1176677 D identified by sequence similarity; dephospho-CoA kinase 1176081..1176677 Leifsonia xyli subsp. xyli str. CTCB07 2939570 YP_062098.1 CDS uvrB NC_006087.1 1176755 1178821 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1176755..1178821 Leifsonia xyli subsp. xyli str. CTCB07 2940504 YP_062099.1 CDS Lxx11460 NC_006087.1 1179350 1179538 R hypothetical protein complement(1179350..1179538) Leifsonia xyli subsp. xyli str. CTCB07 2938959 YP_062100.1 CDS uvrA NC_006087.1 1180186 1183176 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1180186..1183176 Leifsonia xyli subsp. xyli str. CTCB07 2940607 YP_062101.1 CDS uvrC NC_006087.1 1183187 1185157 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1183187..1185157 Leifsonia xyli subsp. xyli str. CTCB07 2940529 YP_062102.1 CDS Lxx11490 NC_006087.1 1185245 1186132 D identified by sequence similarity; hypothetical protein 1185245..1186132 Leifsonia xyli subsp. xyli str. CTCB07 2938387 YP_062103.1 CDS Lxx11500 NC_006087.1 1186189 1187169 D identified by sequence similarity; hypothetical protein 1186189..1187169 Leifsonia xyli subsp. xyli str. CTCB07 2940563 YP_062104.1 CDS sodA NC_006087.1 1187250 1187876 D identified by sequence similarity; superoxide dismutase 1187250..1187876 Leifsonia xyli subsp. xyli str. CTCB07 2939695 YP_062105.1 CDS gap NC_006087.1 1187979 1188989 D identified by sequence similarity; glyceraldehyde 3-phosphate dehydrogenase 1187979..1188989 Leifsonia xyli subsp. xyli str. CTCB07 2938790 YP_062106.1 CDS pgk NC_006087.1 1189005 1190216 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1189005..1190216 Leifsonia xyli subsp. xyli str. CTCB07 2940304 YP_062107.1 CDS tpiA NC_006087.1 1190219 1191022 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1190219..1191022 Leifsonia xyli subsp. xyli str. CTCB07 2938967 YP_062108.1 CDS secG NC_006087.1 1191090 1191335 D identified by sequence similarity; preprotein translocase subunit SecG 1191090..1191335 Leifsonia xyli subsp. xyli str. CTCB07 2938485 YP_062109.1 CDS Lxx11560 NC_006087.1 1191366 1191731 D identified by sequence similarity; electron transport protein 1191366..1191731 Leifsonia xyli subsp. xyli str. CTCB07 2940606 YP_062110.1 CDS pgl NC_006087.1 1191811 1192443 R identified by sequence similarity; 6-phosphogluconolactonase complement(1191811..1192443) Leifsonia xyli subsp. xyli str. CTCB07 2938359 YP_062111.1 CDS opcA NC_006087.1 1192578 1193540 R identified by sequence similarity; oxppcycle protein complement(1192578..1193540) Leifsonia xyli subsp. xyli str. CTCB07 2939972 YP_062112.1 CDS zwf NC_006087.1 1193537 1195078 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(1193537..1195078) Leifsonia xyli subsp. xyli str. CTCB07 2940081 YP_062113.1 CDS pgiA NC_006087.1 1195105 1196715 R identified by sequence similarity; glucose-6-phosphate isomerase complement(1195105..1196715) Leifsonia xyli subsp. xyli str. CTCB07 2939454 YP_062114.1 CDS tal2 NC_006087.1 1196712 1197857 R catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase complement(1196712..1197857) Leifsonia xyli subsp. xyli str. CTCB07 2940374 YP_062115.1 CDS tktA1 NC_006087.1 1197889 1200069 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1197889..1200069) Leifsonia xyli subsp. xyli str. CTCB07 2939993 YP_062116.1 CDS ctaB NC_006087.1 1200279 1201202 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1200279..1201202 Leifsonia xyli subsp. xyli str. CTCB07 2939697 YP_062117.1 CDS ctaA NC_006087.1 1201645 1202571 R identified by sequence similarity; cytochrome oxidase assembly protein complement(1201645..1202571) Leifsonia xyli subsp. xyli str. CTCB07 2940362 YP_062118.1 CDS sufB NC_006087.1 1202869 1204287 D identified by sequence similarity; iron-regulated ABC-type transporter 1202869..1204287 Leifsonia xyli subsp. xyli str. CTCB07 2940043 YP_062119.1 CDS sufD NC_006087.1 1204331 1205515 D identified by sequence similarity; ABC transporter membrane component 1204331..1205515 Leifsonia xyli subsp. xyli str. CTCB07 2940008 YP_062120.1 CDS Lxx11670 NC_006087.1 1205515 1205844 D identified by sequence similarity; benzene 1,2-dioxygenase, ferredoxin protein 1205515..1205844 Leifsonia xyli subsp. xyli str. CTCB07 2940234 YP_062121.1 CDS sufC NC_006087.1 1205847 1206641 D identified by sequence similarity; multidrug resistance exporter 1205847..1206641 Leifsonia xyli subsp. xyli str. CTCB07 2939429 YP_062122.1 CDS Lxx11690 NC_006087.1 1206651 1206980 D identified by sequence similarity; hypothetical protein 1206651..1206980 Leifsonia xyli subsp. xyli str. CTCB07 2938637 YP_062123.1 CDS ybiT NC_006087.1 1207087 1208685 D identified by sequence similarity; ABC transporter ATP-binding protein 1207087..1208685 Leifsonia xyli subsp. xyli str. CTCB07 2938679 YP_062124.1 CDS Lxx11710 NC_006087.1 1208700 1209569 R identified by sequence similarity; hypothetical protein complement(1208700..1209569) Leifsonia xyli subsp. xyli str. CTCB07 2939464 YP_062125.1 CDS Lxx11715 NC_006087.1 1209566 1209799 R identified by sequence similarity; hypothetical protein complement(1209566..1209799) Leifsonia xyli subsp. xyli str. CTCB07 2939215 YP_062126.1 CDS Lxx11730 NC_006087.1 1209799 1210104 R identified by sequence similarity; hypothetical protein complement(1209799..1210104) Leifsonia xyli subsp. xyli str. CTCB07 2938784 YP_062127.1 CDS fabG NC_006087.1 1210183 1210893 D identified by sequence similarity; 3-oxoacyl-ACP reductase 1210183..1210893 Leifsonia xyli subsp. xyli str. CTCB07 2938527 YP_062128.1 CDS serB NC_006087.1 1211006 1211704 R identified by sequence similarity; phosphoserine phosphatase complement(1211006..1211704) Leifsonia xyli subsp. xyli str. CTCB07 2939438 YP_062129.1 CDS glgC NC_006087.1 1211691 1212935 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(1211691..1212935) Leifsonia xyli subsp. xyli str. CTCB07 2939494 YP_062130.1 CDS Lxx11780 NC_006087.1 1214203 1215003 D identified by sequence similarity; ABC transporter ATP-binding protein 1214203..1215003 Leifsonia xyli subsp. xyli str. CTCB07 2938639 YP_062131.1 CDS rpmE2 NC_006087.1 1215123 1215374 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1215123..1215374 Leifsonia xyli subsp. xyli str. CTCB07 2939939 YP_062132.1 CDS Lxx11810 NC_006087.1 1215606 1215902 R identified by sequence similarity; hypothetical protein complement(1215606..1215902) Leifsonia xyli subsp. xyli str. CTCB07 2939467 YP_062133.1 CDS Lxx11820 NC_006087.1 1216073 1216756 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(1216073..1216756) Leifsonia xyli subsp. xyli str. CTCB07 2939657 YP_062134.1 CDS palI NC_006087.1 1216818 1218527 R identified by sequence similarity; trehalose synthase complement(1216818..1218527) Leifsonia xyli subsp. xyli str. CTCB07 2940399 YP_062135.1 CDS Lxx11840 NC_006087.1 1218685 1219572 D identified by sequence similarity; hydrolase 1218685..1219572 Leifsonia xyli subsp. xyli str. CTCB07 2940312 YP_062136.1 CDS mtfB NC_006087.1 1219569 1220651 D identified by sequence similarity; mannosyltransferase 1219569..1220651 Leifsonia xyli subsp. xyli str. CTCB07 2940421 YP_062137.1 CDS gpm NC_006087.1 1222075 1222476 R identified by sequence similarity; phosphoglycerate mutase complement(1222075..1222476) Leifsonia xyli subsp. xyli str. CTCB07 2938759 YP_062138.1 CDS Lxx11890 NC_006087.1 1222524 1223375 R identified by sequence similarity; Sir2 family regulatory protein complement(1222524..1223375) Leifsonia xyli subsp. xyli str. CTCB07 2939883 YP_062139.1 CDS spoU NC_006087.1 1223453 1224286 D identified by sequence similarity; rRNA methyltransferase 1223453..1224286 Leifsonia xyli subsp. xyli str. CTCB07 2938753 YP_062140.1 CDS pbpA NC_006087.1 1224372 1225556 D identified by sequence similarity; D-alanyl-D-alanine endopeptidase 1224372..1225556 Leifsonia xyli subsp. xyli str. CTCB07 2939417 YP_062141.1 CDS Lxx11910 NC_006087.1 1225553 1227943 D identified by sequence similarity; UvrA-like protein 1225553..1227943 Leifsonia xyli subsp. xyli str. CTCB07 2940502 YP_062142.1 CDS Lxx11920 NC_006087.1 1228990 1229067 D hypothetical protein 1228990..1229067 Leifsonia xyli subsp. xyli str. CTCB07 2939433 YP_062143.1 CDS Lxx11940 NC_006087.1 1230536 1231321 R identified by sequence similarity; hypothetical protein complement(1230536..1231321) Leifsonia xyli subsp. xyli str. CTCB07 2938945 YP_062144.1 CDS Lxx11930 NC_006087.1 1231426 1233213 D identified by sequence similarity; hypothetical protein 1231426..1233213 Leifsonia xyli subsp. xyli str. CTCB07 2938510 YP_062145.1 CDS gdhA NC_006087.1 1233261 1234613 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1233261..1234613) Leifsonia xyli subsp. xyli str. CTCB07 2940568 YP_062146.1 CDS amn NC_006087.1 1234993 1235772 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1234993..1235772 Leifsonia xyli subsp. xyli str. CTCB07 2940443 YP_062147.1 CDS Lxx11970 NC_006087.1 1235959 1237893 D identified by sequence similarity; hemagglutinin/hemolysin-like protein 1235959..1237893 Leifsonia xyli subsp. xyli str. CTCB07 2940594 YP_062148.1 CDS bioA NC_006087.1 1237995 1239407 R identified by sequence similarity; hypothetical protein complement(1237995..1239407) Leifsonia xyli subsp. xyli str. CTCB07 2940021 YP_062149.1 CDS asnC NC_006087.1 1239410 1239892 R identified by sequence similarity; AsnC family transcriptional regulator complement(1239410..1239892) Leifsonia xyli subsp. xyli str. CTCB07 2938368 YP_062150.1 CDS Lxx12000 NC_006087.1 1240220 1241356 D identified by sequence similarity; aldehyde dehydrogenase 1240220..1241356 Leifsonia xyli subsp. xyli str. CTCB07 2940516 YP_062151.1 CDS Lxx12010 NC_006087.1 1241434 1242870 D identified by sequence similarity; aldehyde dehydrogenase 1241434..1242870 Leifsonia xyli subsp. xyli str. CTCB07 2938243 YP_062152.1 CDS Lxx12013 NC_006087.1 1242848 1243576 R identified by sequence similarity; hypothetical protein complement(1242848..1243576) Leifsonia xyli subsp. xyli str. CTCB07 2940582 YP_062153.1 CDS Lxx12015 NC_006087.1 1243685 1244077 D identified by sequence similarity; hypothetical protein 1243685..1244077 Leifsonia xyli subsp. xyli str. CTCB07 2938966 YP_062154.1 CDS Lxx12030 NC_006087.1 1244110 1244892 D identified by sequence similarity; protein phosphatase 1244110..1244892 Leifsonia xyli subsp. xyli str. CTCB07 2938944 YP_062155.1 CDS Lxx12040 NC_006087.1 1245154 1246569 D identified by sequence similarity; serine/threonine kinase 1245154..1246569 Leifsonia xyli subsp. xyli str. CTCB07 2938687 YP_062156.1 CDS Lxx12050 NC_006087.1 1246542 1252484 D identified by sequence similarity; fibronectin-like protein 1246542..1252484 Leifsonia xyli subsp. xyli str. CTCB07 2938794 YP_062157.1 CDS Lxx12060 NC_006087.1 1252579 1253550 D identified by sequence similarity; methanol dehydrogenase regulatory protein 1252579..1253550 Leifsonia xyli subsp. xyli str. CTCB07 2939222 YP_062158.1 CDS Lxx12070 NC_006087.1 1253622 1254890 D identified by sequence similarity; hypothetical protein 1253622..1254890 Leifsonia xyli subsp. xyli str. CTCB07 2939374 YP_062159.1 CDS Lxx12080 NC_006087.1 1254887 1257199 D identified by sequence similarity; hypothetical protein 1254887..1257199 Leifsonia xyli subsp. xyli str. CTCB07 2939757 YP_062160.1 CDS Lxx12090 NC_006087.1 1257196 1257777 D identified by sequence similarity; hypothetical protein 1257196..1257777 Leifsonia xyli subsp. xyli str. CTCB07 2940188 YP_062161.1 CDS ald NC_006087.1 1257829 1258944 R identified by sequence similarity; alanine dehydrogenase complement(1257829..1258944) Leifsonia xyli subsp. xyli str. CTCB07 2939434 YP_062162.1 CDS Lxx12110 NC_006087.1 1259209 1260261 R identified by sequence similarity; hypothetical protein complement(1259209..1260261) Leifsonia xyli subsp. xyli str. CTCB07 2939691 YP_062163.1 CDS goaG NC_006087.1 1260258 1261580 R identified by sequence similarity; 4-aminobutyrate aminotransferase complement(1260258..1261580) Leifsonia xyli subsp. xyli str. CTCB07 2940018 YP_062164.1 CDS Lxx12120 NC_006087.1 1261653 1262126 D identified by sequence similarity; hypothetical protein 1261653..1262126 Leifsonia xyli subsp. xyli str. CTCB07 2940513 YP_062165.1 CDS plsC NC_006087.1 1262134 1262871 R identified by sequence similarity; 1-acylglycerol-3-phosphate O-acyltransferase complement(1262134..1262871) Leifsonia xyli subsp. xyli str. CTCB07 2940581 YP_062166.1 CDS Lxx12150 NC_006087.1 1262918 1263784 R identified by sequence similarity; hypothetical protein complement(1262918..1263784) Leifsonia xyli subsp. xyli str. CTCB07 2940262 YP_062167.1 CDS gabT NC_006087.1 1263794 1265131 R identified by sequence similarity; 4-aminobutyrate aminotransferase complement(1263794..1265131) Leifsonia xyli subsp. xyli str. CTCB07 2939784 YP_062168.1 CDS fkpA NC_006087.1 1265147 1266163 D identified by sequence similarity; peptidylprolyl isomerase 1265147..1266163 Leifsonia xyli subsp. xyli str. CTCB07 2939932 YP_062169.1 CDS dxr NC_006087.1 1266163 1267248 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1266163..1267248 Leifsonia xyli subsp. xyli str. CTCB07 2940397 YP_062170.1 CDS Lxx12190 NC_006087.1 1267322 1268653 D identified by sequence similarity; zinc metalloprotease 1267322..1268653 Leifsonia xyli subsp. xyli str. CTCB07 2938956 YP_062171.1 CDS ispG NC_006087.1 1268704 1269867 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1268704..1269867 Leifsonia xyli subsp. xyli str. CTCB07 2940560 YP_062172.1 CDS proS NC_006087.1 1269974 1271746 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1269974..1271746 Leifsonia xyli subsp. xyli str. CTCB07 2939517 YP_062173.1 CDS Lxx12220 NC_006087.1 1271768 1272814 R identified by sequence similarity; hypothetical protein complement(1271768..1272814) Leifsonia xyli subsp. xyli str. CTCB07 2939554 YP_062174.1 CDS Lxx12230 NC_006087.1 1273049 1274071 R identified by sequence similarity; hypothetical protein complement(1273049..1274071) Leifsonia xyli subsp. xyli str. CTCB07 2939923 YP_062175.1 CDS Lxx12240 NC_006087.1 1274339 1274995 D identified by sequence similarity; TetR family transcriptional regulator 1274339..1274995 Leifsonia xyli subsp. xyli str. CTCB07 2939895 YP_062176.1 CDS proV NC_006087.1 1275185 1276078 D identified by sequence similarity; ABC-type glycine betaine transport, ATP-binding protein 1275185..1276078 Leifsonia xyli subsp. xyli str. CTCB07 2940214 YP_062177.1 CDS proW NC_006087.1 1276075 1276764 D identified by sequence similarity; ABC-type glycine betaine transport, permease 1276075..1276764 Leifsonia xyli subsp. xyli str. CTCB07 2938674 YP_062178.1 CDS proZ NC_006087.1 1276761 1277504 D identified by sequence similarity; ABC-type glycine betaine transport, permease 1276761..1277504 Leifsonia xyli subsp. xyli str. CTCB07 2939591 YP_062179.1 CDS proX NC_006087.1 1277510 1278463 D identified by sequence similarity; ABC-type glycine betaine transport, substrate-binding protein 1277510..1278463 Leifsonia xyli subsp. xyli str. CTCB07 2939621 YP_062180.1 CDS Lxx12290 NC_006087.1 1278628 1279569 R identified by sequence similarity; hypothetical protein complement(1278628..1279569) Leifsonia xyli subsp. xyli str. CTCB07 2939389 YP_062181.1 CDS Lxx12310 NC_006087.1 1279574 1279939 R identified by sequence similarity; hypothetical protein complement(1279574..1279939) Leifsonia xyli subsp. xyli str. CTCB07 2940138 YP_062182.1 CDS cydA NC_006087.1 1280034 1281446 D identified by sequence similarity; cytochrome D ubiquinol oxidase subunit I 1280034..1281446 Leifsonia xyli subsp. xyli str. CTCB07 2940506 YP_062183.1 CDS cydB NC_006087.1 1281460 1282479 D identified by sequence similarity; cytochrome D ubiquinol oxidase subunit II 1281460..1282479 Leifsonia xyli subsp. xyli str. CTCB07 2940097 YP_062184.1 CDS cydD NC_006087.1 1282481 1284106 D identified by sequence similarity; ABC transporter ATP-binding protein 1282481..1284106 Leifsonia xyli subsp. xyli str. CTCB07 2940178 YP_062185.1 CDS cydC NC_006087.1 1284093 1285820 D identified by sequence similarity; ABC transporter ATP-binding protein 1284093..1285820 Leifsonia xyli subsp. xyli str. CTCB07 2940172 YP_062186.1 CDS Lxx12350 NC_006087.1 1285824 1286600 R identified by sequence similarity; hypothetical protein complement(1285824..1286600) Leifsonia xyli subsp. xyli str. CTCB07 2940026 YP_062187.1 CDS trpE NC_006087.1 1286636 1288093 D identified by sequence similarity; anthranilate synthase component I 1286636..1288093 Leifsonia xyli subsp. xyli str. CTCB07 2938692 YP_062188.1 CDS leuS NC_006087.1 1288182 1290782 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1288182..1290782 Leifsonia xyli subsp. xyli str. CTCB07 2939631 YP_062189.1 CDS Lxx12380 NC_006087.1 1291172 1291603 D identified by sequence similarity; hypothetical protein 1291172..1291603 Leifsonia xyli subsp. xyli str. CTCB07 2940099 YP_062190.1 CDS Lxx12390 NC_006087.1 1291633 1292910 D identified by sequence similarity; hypothetical protein 1291633..1292910 Leifsonia xyli subsp. xyli str. CTCB07 2940006 YP_062191.1 CDS Lxx12420 NC_006087.1 1294018 1294179 D hypothetical protein 1294018..1294179 Leifsonia xyli subsp. xyli str. CTCB07 2938384 YP_062192.1 CDS tnp NC_006087.1 1294633 1294998 D identified by sequence similarity; transposase, ISlxx4 1294633..1294998 Leifsonia xyli subsp. xyli str. CTCB07 2940492 YP_062193.1 CDS rpsB NC_006087.1 1295749 1296645 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1295749..1296645 Leifsonia xyli subsp. xyli str. CTCB07 2940271 YP_062194.1 CDS tsf NC_006087.1 1296688 1297518 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1296688..1297518 Leifsonia xyli subsp. xyli str. CTCB07 2939342 YP_062195.1 CDS pyrH NC_006087.1 1297632 1298345 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1297632..1298345 Leifsonia xyli subsp. xyli str. CTCB07 2938492 YP_062196.1 CDS frr NC_006087.1 1298390 1298950 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1298390..1298950 Leifsonia xyli subsp. xyli str. CTCB07 2938408 YP_062197.1 CDS cdsA NC_006087.1 1299032 1299940 D identified by sequence similarity; phosphatidate cytidylyltransferase 1299032..1299940 Leifsonia xyli subsp. xyli str. CTCB07 2940612 YP_062198.1 CDS Lxx12490 NC_006087.1 1299953 1300489 D identified by sequence similarity; hypothetical protein 1299953..1300489 Leifsonia xyli subsp. xyli str. CTCB07 2939941 YP_062199.1 CDS Lxx12500 NC_006087.1 1300561 1301274 D identified by sequence similarity; secreted protein 1300561..1301274 Leifsonia xyli subsp. xyli str. CTCB07 2940591 YP_062200.1 CDS Lxx12510 NC_006087.1 1301293 1301592 D identified by sequence similarity; ATP/GTP-binding protein 1301293..1301592 Leifsonia xyli subsp. xyli str. CTCB07 2938404 YP_062201.1 CDS Lxx12520 NC_006087.1 1301608 1302339 D identified by sequence similarity; hypothetical protein 1301608..1302339 Leifsonia xyli subsp. xyli str. CTCB07 2938980 YP_062202.1 CDS Lxx12530 NC_006087.1 1302350 1303180 R identified by sequence similarity; hypothetical protein complement(1302350..1303180) Leifsonia xyli subsp. xyli str. CTCB07 2938954 YP_062203.1 CDS Lxx12540 NC_006087.1 1303409 1305718 R identified by sequence similarity; large Ala/Glu-rich protein complement(1303409..1305718) Leifsonia xyli subsp. xyli str. CTCB07 2940249 YP_062204.1 CDS Lxx12550 NC_006087.1 1305841 1307748 D identified by sequence similarity; hypothetical protein 1305841..1307748 Leifsonia xyli subsp. xyli str. CTCB07 2939217 YP_062205.1 CDS trxA NC_006087.1 1307772 1308725 D identified by sequence similarity; thioredoxin 1307772..1308725 Leifsonia xyli subsp. xyli str. CTCB07 2938971 YP_062206.1 CDS glgB NC_006087.1 1308770 1310971 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(1308770..1310971) Leifsonia xyli subsp. xyli str. CTCB07 2938397 YP_062207.1 CDS Lxx12580 NC_006087.1 1310968 1313028 R identified by sequence similarity; alpha-amylase complement(1310968..1313028) Leifsonia xyli subsp. xyli str. CTCB07 2938766 YP_062208.1 CDS Lxx12610 NC_006087.1 1315071 1315526 R hypothetical protein complement(1315071..1315526) Leifsonia xyli subsp. xyli str. CTCB07 2938558 YP_062209.1 CDS Lxx12620 NC_006087.1 1316051 1316290 D hypothetical protein 1316051..1316290 Leifsonia xyli subsp. xyli str. CTCB07 2939758 YP_062210.1 CDS Lxx12630 NC_006087.1 1316304 1316762 D identified by sequence similarity; hypothetical protein 1316304..1316762 Leifsonia xyli subsp. xyli str. CTCB07 2938783 YP_062211.1 CDS Lxx12640 NC_006087.1 1316878 1317222 D hypothetical protein 1316878..1317222 Leifsonia xyli subsp. xyli str. CTCB07 2939353 YP_062212.1 CDS Lxx12650 NC_006087.1 1318053 1319150 D hypothetical protein 1318053..1319150 Leifsonia xyli subsp. xyli str. CTCB07 2938309 YP_062213.1 CDS Lxx12670 NC_006087.1 1320141 1320443 R identified by sequence similarity; hypothetical protein complement(1320141..1320443) Leifsonia xyli subsp. xyli str. CTCB07 2940298 YP_062214.1 CDS Lxx12690 NC_006087.1 1320805 1321278 R identified by sequence similarity; AhpC/TSA family protein complement(1320805..1321278) Leifsonia xyli subsp. xyli str. CTCB07 2939720 YP_062215.1 CDS aceE NC_006087.1 1321491 1324217 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1321491..1324217 Leifsonia xyli subsp. xyli str. CTCB07 2938684 YP_062216.1 CDS Lxx12710 NC_006087.1 1324228 1325436 D identified by sequence similarity; hypothetical protein 1324228..1325436 Leifsonia xyli subsp. xyli str. CTCB07 2938921 YP_062217.1 CDS fabD NC_006087.1 1325522 1326442 D identified by sequence similarity; ACP S-malonyltransferase 1325522..1326442 Leifsonia xyli subsp. xyli str. CTCB07 2938733 YP_062218.1 CDS fabH NC_006087.1 1326454 1327464 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1326454..1327464 Leifsonia xyli subsp. xyli str. CTCB07 2938658 YP_062219.1 CDS acpP NC_006087.1 1327507 1327758 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1327507..1327758 Leifsonia xyli subsp. xyli str. CTCB07 2940297 YP_062220.1 CDS fabF NC_006087.1 1327840 1329102 D identified by sequence similarity; 3-oxoacyl-ACP synthase 1327840..1329102 Leifsonia xyli subsp. xyli str. CTCB07 2940251 YP_062221.1 CDS Lxx12770 NC_006087.1 1329349 1329927 R identified by sequence similarity; hypothetical protein complement(1329349..1329927) Leifsonia xyli subsp. xyli str. CTCB07 2939243 YP_062222.1 CDS tesB NC_006087.1 1330081 1330950 D identified by sequence similarity; acyl-CoA thioesterase 1330081..1330950 Leifsonia xyli subsp. xyli str. CTCB07 2939639 YP_062223.1 CDS Lxx12780 NC_006087.1 1331711 1332220 D identified by sequence similarity; hypothetical protein 1331711..1332220 Leifsonia xyli subsp. xyli str. CTCB07 2939585 YP_062224.1 CDS Lxx12790 NC_006087.1 1332243 1332362 R hypothetical protein complement(1332243..1332362) Leifsonia xyli subsp. xyli str. CTCB07 2939638 YP_062225.1 CDS Lxx12800 NC_006087.1 1332585 1332728 R identified by sequence similarity; hypothetical protein complement(1332585..1332728) Leifsonia xyli subsp. xyli str. CTCB07 2939412 YP_062226.1 CDS Lxx12810 NC_006087.1 1332739 1334400 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(1332739..1334400) Leifsonia xyli subsp. xyli str. CTCB07 2940121 YP_062227.1 CDS Lxx12820 NC_006087.1 1334551 1335051 R hypothetical protein complement(1334551..1335051) Leifsonia xyli subsp. xyli str. CTCB07 2938792 YP_062228.1 CDS Lxx12825 NC_006087.1 1335053 1335493 R identified by sequence similarity; single-strand DNA-binding protein complement(1335053..1335493) Leifsonia xyli subsp. xyli str. CTCB07 2939840 YP_062229.1 CDS Lxx12840 NC_006087.1 1336008 1336649 R identified by sequence similarity; glycosyltransferase complement(1336008..1336649) Leifsonia xyli subsp. xyli str. CTCB07 2939292 YP_062230.1 CDS Lxx12850 NC_006087.1 1336832 1337497 D hypothetical protein 1336832..1337497 Leifsonia xyli subsp. xyli str. CTCB07 2938469 YP_062231.1 CDS nadE NC_006087.1 1337518 1338357 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1337518..1338357) Leifsonia xyli subsp. xyli str. CTCB07 2938706 YP_062232.1 CDS Lxx12870 NC_006087.1 1338395 1339249 R identified by sequence similarity; LysR family transcriptional regulator complement(1338395..1339249) Leifsonia xyli subsp. xyli str. CTCB07 2940222 YP_062233.1 CDS pimH NC_006087.1 1339381 1340727 D identified by sequence similarity; integral membrane efflux protein 1339381..1340727 Leifsonia xyli subsp. xyli str. CTCB07 2939556 YP_062234.1 CDS Lxx12890 NC_006087.1 1341013 1341681 D hypothetical protein 1341013..1341681 Leifsonia xyli subsp. xyli str. CTCB07 2938638 YP_062235.1 CDS Lxx12895 NC_006087.1 1343133 1343681 R identified by sequence similarity; hypothetical protein complement(1343133..1343681) Leifsonia xyli subsp. xyli str. CTCB07 2940339 YP_062236.1 CDS Lxx12905 NC_006087.1 1344472 1345038 D hypothetical protein 1344472..1345038 Leifsonia xyli subsp. xyli str. CTCB07 2940118 YP_062237.1 CDS Lxx12930 NC_006087.1 1346526 1347155 D hypothetical protein 1346526..1347155 Leifsonia xyli subsp. xyli str. CTCB07 2940338 YP_062238.1 CDS Lxx12950 NC_006087.1 1348574 1349992 D hypothetical protein 1348574..1349992 Leifsonia xyli subsp. xyli str. CTCB07 2940386 YP_062239.1 CDS Lxx12955 NC_006087.1 1350386 1351030 D identified by sequence similarity; transposase 1350386..1351030 Leifsonia xyli subsp. xyli str. CTCB07 2939906 YP_062240.1 CDS tpase NC_006087.1 1352017 1353126 D identified by sequence similarity; transposase, ISlxx2 1352017..1353126 Leifsonia xyli subsp. xyli str. CTCB07 2939911 YP_062241.1 CDS Lxx12980 NC_006087.1 1353209 1353445 D identified by sequence similarity; transposase-truncated 1353209..1353445 Leifsonia xyli subsp. xyli str. CTCB07 2939502 YP_062242.1 CDS Lxx12990 NC_006087.1 1354040 1354501 D hypothetical protein 1354040..1354501 Leifsonia xyli subsp. xyli str. CTCB07 2939956 YP_062243.1 CDS Lxx13000 NC_006087.1 1354498 1355637 D identified by sequence similarity; secreted protein 1354498..1355637 Leifsonia xyli subsp. xyli str. CTCB07 2940268 YP_062244.1 CDS cbbZ NC_006087.1 1355652 1356206 R identified by sequence similarity; phosphoglycolate phosphatase complement(1355652..1356206) Leifsonia xyli subsp. xyli str. CTCB07 2939969 YP_062245.1 CDS Lxx13020 NC_006087.1 1356488 1356661 D identified by sequence similarity; transposase 1356488..1356661 Leifsonia xyli subsp. xyli str. CTCB07 2938484 YP_062246.1 CDS tnp NC_006087.1 1356788 1357603 D identified by sequence similarity; IS1245 transposase 1356788..1357603 Leifsonia xyli subsp. xyli str. CTCB07 2940219 YP_062247.1 CDS Lxx13040 NC_006087.1 1358120 1359328 R identified by sequence similarity; phage-related integrase complement(1358120..1359328) Leifsonia xyli subsp. xyli str. CTCB07 2939685 YP_062248.1 CDS Lxx13050 NC_006087.1 1359321 1359521 R identified by sequence similarity; hypothetical protein complement(1359321..1359521) Leifsonia xyli subsp. xyli str. CTCB07 2940508 YP_062249.1 CDS Lxx13070 NC_006087.1 1359871 1360812 R identified by sequence similarity; pyridine nucleotide-disulfide oxidoreductase complement(1359871..1360812) Leifsonia xyli subsp. xyli str. CTCB07 2939882 YP_062250.1 CDS gltX NC_006087.1 1360817 1362292 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1360817..1362292) Leifsonia xyli subsp. xyli str. CTCB07 2938719 YP_062251.1 CDS Lxx13090 NC_006087.1 1362360 1363145 R identified by sequence similarity; 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase complement(1362360..1363145) Leifsonia xyli subsp. xyli str. CTCB07 2940361 YP_062252.1 CDS Lxx13100 NC_006087.1 1363142 1363369 R identified by sequence similarity; hypothetical protein complement(1363142..1363369) Leifsonia xyli subsp. xyli str. CTCB07 2939388 YP_062253.1 CDS Lxx13110 NC_006087.1 1363545 1364024 R identified by sequence similarity; oxidoreductase complement(1363545..1364024) Leifsonia xyli subsp. xyli str. CTCB07 2938379 YP_062254.1 CDS ilvE NC_006087.1 1364222 1365355 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1364222..1365355) Leifsonia xyli subsp. xyli str. CTCB07 2940072 YP_062255.1 CDS leuB NC_006087.1 1365378 1366451 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(1365378..1366451) Leifsonia xyli subsp. xyli str. CTCB07 2939672 YP_062256.1 CDS serA NC_006087.1 1366824 1368416 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(1366824..1368416) Leifsonia xyli subsp. xyli str. CTCB07 2940274 YP_062257.1 CDS Lxx13150 NC_006087.1 1368528 1368725 R hypothetical protein complement(1368528..1368725) Leifsonia xyli subsp. xyli str. CTCB07 2940311 YP_062258.1 CDS Lxx13160 NC_006087.1 1368802 1369047 R identified by sequence similarity; hypothetical protein complement(1368802..1369047) Leifsonia xyli subsp. xyli str. CTCB07 2938648 YP_062259.1 CDS ilvC NC_006087.1 1369392 1370420 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(1369392..1370420) Leifsonia xyli subsp. xyli str. CTCB07 2940475 YP_062260.1 CDS ilvH NC_006087.1 1370484 1370993 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(1370484..1370993) Leifsonia xyli subsp. xyli str. CTCB07 2939073 YP_062261.1 CDS ilvB NC_006087.1 1370997 1372817 R acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 1 catalytic subunit complement(1370997..1372817) Leifsonia xyli subsp. xyli str. CTCB07 2939447 YP_062262.1 CDS ilvD NC_006087.1 1372875 1374569 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1372875..1374569) Leifsonia xyli subsp. xyli str. CTCB07 2939936 YP_062263.1 CDS otsB NC_006087.1 1374668 1375471 R identified by sequence similarity; trehalose-phosphatase protein complement(1374668..1375471) Leifsonia xyli subsp. xyli str. CTCB07 2939592 YP_062264.1 CDS otsA NC_006087.1 1375508 1376986 R identified by sequence similarity; trehalose-6-phosphate synthase complement(1375508..1376986) Leifsonia xyli subsp. xyli str. CTCB07 2939888 YP_062265.1 CDS Lxx13240 NC_006087.1 1377455 1378141 R identified by sequence similarity; secreted hydrolase complement(1377455..1378141) Leifsonia xyli subsp. xyli str. CTCB07 2940101 YP_062266.1 CDS arsB NC_006087.1 1378296 1379543 R identified by sequence similarity; arsenical pump membrane protein complement(1378296..1379543) Leifsonia xyli subsp. xyli str. CTCB07 2938289 YP_062267.1 CDS Lxx13270 NC_006087.1 1379834 1380271 D hypothetical protein 1379834..1380271 Leifsonia xyli subsp. xyli str. CTCB07 2939288 YP_062268.1 CDS Lxx13300 NC_006087.1 1381715 1383490 D identified by sequence similarity; hypothetical protein 1381715..1383490 Leifsonia xyli subsp. xyli str. CTCB07 2940230 YP_062269.1 CDS clpS NC_006087.1 1383490 1383783 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1383490..1383783 Leifsonia xyli subsp. xyli str. CTCB07 2939929 YP_062270.1 CDS Lxx13320 NC_006087.1 1383780 1384283 D identified by sequence similarity; hypothetical protein 1383780..1384283 Leifsonia xyli subsp. xyli str. CTCB07 2940141 YP_062271.1 CDS scG NC_006087.1 1385130 1386383 R identified by sequence similarity; ROK family transcriptional regulator complement(1385130..1386383) Leifsonia xyli subsp. xyli str. CTCB07 2938567 YP_062272.1 CDS Lxx13360 NC_006087.1 1388617 1388928 D hypothetical protein 1388617..1388928 Leifsonia xyli subsp. xyli str. CTCB07 2938287 YP_062273.1 CDS Lxx13380 NC_006087.1 1389366 1389569 R hypothetical protein complement(1389366..1389569) Leifsonia xyli subsp. xyli str. CTCB07 2939872 YP_062274.1 CDS Lxx13400 NC_006087.1 1390284 1391063 D identified by sequence similarity; inositol monophosphatase 1390284..1391063 Leifsonia xyli subsp. xyli str. CTCB07 2940378 YP_062275.1 CDS Lxx13405 NC_006087.1 1391070 1391438 R identified by sequence similarity; ArsR family transcriptional regulator complement(1391070..1391438) Leifsonia xyli subsp. xyli str. CTCB07 2940130 YP_062276.1 CDS natA NC_006087.1 1391531 1392466 D identified by sequence similarity; ABC transporter ATP-binding protein 1391531..1392466 Leifsonia xyli subsp. xyli str. CTCB07 2939875 YP_062277.1 CDS Lxx13420 NC_006087.1 1392468 1393709 D identified by sequence similarity; ATP-dependent Na+ efflux pump 1392468..1393709 Leifsonia xyli subsp. xyli str. CTCB07 2938973 YP_062278.1 CDS add NC_006087.1 1394359 1395381 D catalyzes the formation of inosine from adenosine; adenosine deaminase 1394359..1395381 Leifsonia xyli subsp. xyli str. CTCB07 2939764 YP_062279.1 CDS Lxx13440 NC_006087.1 1395457 1396902 D identified by sequence similarity; amino acid permease 1395457..1396902 Leifsonia xyli subsp. xyli str. CTCB07 2939907 YP_062280.1 CDS deaD NC_006087.1 1396913 1398682 R identified by sequence similarity; ATP-dependent RNA helicase complement(1396913..1398682) Leifsonia xyli subsp. xyli str. CTCB07 2940321 YP_062281.1 CDS Lxx13462 NC_006087.1 1398860 1399141 D identified by sequence similarity; transposase 1398860..1399141 Leifsonia xyli subsp. xyli str. CTCB07 2940511 YP_062282.1 CDS Lxx13470 NC_006087.1 1401250 1401879 R hypothetical protein complement(1401250..1401879) Leifsonia xyli subsp. xyli str. CTCB07 2939909 YP_062283.1 CDS Lxx13480 NC_006087.1 1401945 1402631 R identified by sequence similarity; hypothetical protein complement(1401945..1402631) Leifsonia xyli subsp. xyli str. CTCB07 2939399 YP_062284.1 CDS smpB NC_006087.1 1402689 1403165 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1402689..1403165) Leifsonia xyli subsp. xyli str. CTCB07 2939702 YP_062285.1 CDS ftsX NC_006087.1 1403239 1404144 R identified by sequence similarity; cell division protein complement(1403239..1404144) Leifsonia xyli subsp. xyli str. CTCB07 2939300 YP_062286.1 CDS ftsE NC_006087.1 1404141 1405202 R identified by sequence similarity; ABC transporter ATP-binding protein complement(1404141..1405202) Leifsonia xyli subsp. xyli str. CTCB07 2939475 YP_062287.1 CDS prfB NC_006087.1 1405294 1406412 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(1405294..1406412) Leifsonia xyli subsp. xyli str. CTCB07 2940445 YP_062288.1 CDS rsP NC_006087.1 1407016 1407747 D identified by sequence similarity; hemagglutinin/hemolysin-like protein 1407016..1407747 Leifsonia xyli subsp. xyli str. CTCB07 2939791 YP_062289.1 CDS Lxx13550 NC_006087.1 1407799 1408095 D hypothetical protein 1407799..1408095 Leifsonia xyli subsp. xyli str. CTCB07 2939933 YP_062290.1 CDS Lxx13560 NC_006087.1 1408544 1409164 D identified by sequence similarity; hypothetical protein 1408544..1409164 Leifsonia xyli subsp. xyli str. CTCB07 2939314 YP_062291.1 CDS Lxx13570 NC_006087.1 1409169 1409768 R identified by sequence similarity; hypothetical protein complement(1409169..1409768) Leifsonia xyli subsp. xyli str. CTCB07 2940345 YP_062292.1 CDS rph NC_006087.1 1409768 1410523 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(1409768..1410523) Leifsonia xyli subsp. xyli str. CTCB07 2938647 YP_062293.1 CDS murI NC_006087.1 1410566 1411384 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1410566..1411384) Leifsonia xyli subsp. xyli str. CTCB07 2938471 YP_062294.1 CDS pncB NC_006087.1 1411419 1412729 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1411419..1412729 Leifsonia xyli subsp. xyli str. CTCB07 2939686 YP_062295.1 CDS Lxx13610 NC_006087.1 1412737 1412982 R identified by sequence similarity; hypothetical protein complement(1412737..1412982) Leifsonia xyli subsp. xyli str. CTCB07 2938986 YP_062296.1 CDS Lxx13620 NC_006087.1 1413046 1414572 R identified by sequence similarity; hypothetical protein complement(1413046..1414572) Leifsonia xyli subsp. xyli str. CTCB07 2939104 YP_062297.1 CDS natA NC_006087.1 1414584 1415336 R identified by sequence similarity; ABC transporter ATP-binding protein complement(1414584..1415336) Leifsonia xyli subsp. xyli str. CTCB07 2939479 YP_062298.1 CDS rfbA NC_006087.1 1416638 1417522 D identified by sequence similarity; lipopolysaccharide exporter 1416638..1417522 Leifsonia xyli subsp. xyli str. CTCB07 2940194 YP_062299.1 CDS Lxx13680 NC_006087.1 1417522 1418256 D identified by sequence similarity; lipopolysaccharide exporter 1417522..1418256 Leifsonia xyli subsp. xyli str. CTCB07 2939905 YP_062300.1 CDS Lxx13690 NC_006087.1 1418366 1418713 D hypothetical protein 1418366..1418713 Leifsonia xyli subsp. xyli str. CTCB07 2939858 YP_062301.1 CDS Lxx13700 NC_006087.1 1418815 1419897 D identified by sequence similarity; hypothetical protein 1418815..1419897 Leifsonia xyli subsp. xyli str. CTCB07 2938297 YP_062302.1 CDS Lxx13710 NC_006087.1 1419936 1421585 D identified by sequence similarity; serine protease 1419936..1421585 Leifsonia xyli subsp. xyli str. CTCB07 2938438 YP_062303.1 CDS exoA NC_006087.1 1421699 1422751 D identified by sequence similarity; glucosyltransferase 1421699..1422751 Leifsonia xyli subsp. xyli str. CTCB07 2938823 YP_062304.1 CDS Lxx13730 NC_006087.1 1422754 1423572 D identified by sequence similarity; transferase 1422754..1423572 Leifsonia xyli subsp. xyli str. CTCB07 2938539 YP_062305.1 CDS Lxx13740 NC_006087.1 1423565 1424446 D identified by sequence similarity; glycosyltransferase 1423565..1424446 Leifsonia xyli subsp. xyli str. CTCB07 2938421 YP_062306.1 CDS tnp NC_006087.1 1425682 1426893 R identified by sequence similarity; transposase, ISlxx5 complement(1425682..1426893) Leifsonia xyli subsp. xyli str. CTCB07 2938702 YP_062307.1 CDS tpase NC_006087.1 1428633 1429742 D identified by sequence similarity; transposase, ISlxx2 1428633..1429742 Leifsonia xyli subsp. xyli str. CTCB07 2939633 YP_062308.1 CDS tnp NC_006087.1 1429810 1430400 R identified by sequence similarity; transposase, undefined complement(1429810..1430400) Leifsonia xyli subsp. xyli str. CTCB07 2938357 YP_062309.1 CDS Lxx13800 NC_006087.1 1430601 1430738 D hypothetical protein 1430601..1430738 Leifsonia xyli subsp. xyli str. CTCB07 2940324 YP_062310.1 CDS Lxx13830 NC_006087.1 1433760 1433948 D identified by sequence similarity; transposase 1433760..1433948 Leifsonia xyli subsp. xyli str. CTCB07 2940603 YP_062311.1 CDS Lxx13840 NC_006087.1 1435523 1435714 D identified by sequence similarity; hypothetical protein 1435523..1435714 Leifsonia xyli subsp. xyli str. CTCB07 2939871 YP_062312.1 CDS Lxx13850 NC_006087.1 1436636 1437826 D identified by sequence similarity; hypothetical protein 1436636..1437826 Leifsonia xyli subsp. xyli str. CTCB07 2939963 YP_062313.1 CDS Lxx13860 NC_006087.1 1437985 1438080 D hypothetical protein 1437985..1438080 Leifsonia xyli subsp. xyli str. CTCB07 2939463 YP_062314.1 CDS Lxx13870 NC_006087.1 1438091 1438201 D hypothetical protein 1438091..1438201 Leifsonia xyli subsp. xyli str. CTCB07 2938561 YP_062315.1 CDS tpase1 NC_006087.1 1438256 1439323 D identified by sequence similarity; transposase, ISlxx1-degenerated 1438256..1439323 Leifsonia xyli subsp. xyli str. CTCB07 2939755 YP_062316.1 CDS tpase2 NC_006087.1 1439713 1440375 D identified by sequence similarity; transposase, ISlxx1-degenerated 1439713..1440375 Leifsonia xyli subsp. xyli str. CTCB07 2938745 YP_062317.1 CDS Lxx13910 NC_006087.1 1440446 1440862 R identified by sequence similarity; transposase, undefined complement(1440446..1440862) Leifsonia xyli subsp. xyli str. CTCB07 2939253 YP_062318.1 CDS Lxx13920 NC_006087.1 1441463 1441651 D hypothetical protein 1441463..1441651 Leifsonia xyli subsp. xyli str. CTCB07 2939920 YP_062319.1 CDS Lxx13930 NC_006087.1 1441644 1442000 D hypothetical protein 1441644..1442000 Leifsonia xyli subsp. xyli str. CTCB07 2938283 YP_062320.1 CDS Lxx13940 NC_006087.1 1442416 1442958 D identified by sequence similarity; hypothetical protein 1442416..1442958 Leifsonia xyli subsp. xyli str. CTCB07 2939102 YP_062321.1 CDS Lxx13950 NC_006087.1 1443131 1443880 D hypothetical protein 1443131..1443880 Leifsonia xyli subsp. xyli str. CTCB07 2940177 YP_062322.1 CDS Lxx13990 NC_006087.1 1446031 1446579 D hypothetical protein 1446031..1446579 Leifsonia xyli subsp. xyli str. CTCB07 2939482 YP_062323.1 CDS Lxx14000 NC_006087.1 1446576 1447925 D identified by sequence similarity; N-acetyl-glucosamine transferase 1446576..1447925 Leifsonia xyli subsp. xyli str. CTCB07 2940176 YP_062324.1 CDS Lxx14010 NC_006087.1 1448073 1449251 D hypothetical protein 1448073..1449251 Leifsonia xyli subsp. xyli str. CTCB07 2938770 YP_062325.1 CDS Lxx14024 NC_006087.1 1449434 1450852 R identified by sequence similarity; N-acetyl-glucosamine transferase complement(1449434..1450852) Leifsonia xyli subsp. xyli str. CTCB07 2940503 YP_062326.1 CDS Lxx14026 NC_006087.1 1451176 1452225 R identified by sequence similarity; UDP-N-acetylglucosamine 2-epimerase complement(1451176..1452225) Leifsonia xyli subsp. xyli str. CTCB07 2940248 YP_062327.1 CDS Lxx14028 NC_006087.1 1452533 1452823 D identified by sequence similarity; hypothetical protein 1452533..1452823 Leifsonia xyli subsp. xyli str. CTCB07 2939891 YP_062328.1 CDS Lxx14030 NC_006087.1 1452930 1453436 D identified by sequence similarity; hypothetical protein 1452930..1453436 Leifsonia xyli subsp. xyli str. CTCB07 2940326 YP_062329.1 CDS yfP NC_006087.1 1453730 1454797 D identified by sequence similarity; iron uptake ABC transporter substrate-binding protein 1453730..1454797 Leifsonia xyli subsp. xyli str. CTCB07 2940307 YP_062330.1 CDS y4fN NC_006087.1 1455889 1457556 D identified by sequence similarity; ABC transporter permease 1455889..1457556 Leifsonia xyli subsp. xyli str. CTCB07 2939590 YP_062331.1 CDS Lxx14080 NC_006087.1 1457553 1458446 D hypothetical protein 1457553..1458446 Leifsonia xyli subsp. xyli str. CTCB07 2940002 YP_062332.1 CDS Lxx14090 NC_006087.1 1458478 1459311 D identified by sequence similarity; hypothetical protein 1458478..1459311 Leifsonia xyli subsp. xyli str. CTCB07 2938474 YP_062333.1 CDS Lxx14110 NC_006087.1 1459308 1460312 D identified by sequence similarity; LacI family transcription regulator 1459308..1460312 Leifsonia xyli subsp. xyli str. CTCB07 2939868 YP_062334.1 CDS Lxx14120 NC_006087.1 1460420 1461286 D hypothetical protein 1460420..1461286 Leifsonia xyli subsp. xyli str. CTCB07 2938296 YP_062335.1 CDS lsr2 NC_006087.1 1461868 1462212 D identified by sequence similarity; hypothetical protein 1461868..1462212 Leifsonia xyli subsp. xyli str. CTCB07 2939855 YP_062336.1 CDS Lxx14150 NC_006087.1 1462766 1463389 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(1462766..1463389) Leifsonia xyli subsp. xyli str. CTCB07 2940227 YP_062337.1 CDS Lxx14160 NC_006087.1 1463400 1464323 R identified by sequence similarity; hypothetical protein complement(1463400..1464323) Leifsonia xyli subsp. xyli str. CTCB07 2938263 YP_062338.1 CDS trxA NC_006087.1 1464332 1464631 D identified by sequence similarity; thioredoxin 1464332..1464631 Leifsonia xyli subsp. xyli str. CTCB07 2939689 YP_062339.1 CDS Lxx14180 NC_006087.1 1464784 1465776 D identified by sequence similarity; hypothetical protein 1464784..1465776 Leifsonia xyli subsp. xyli str. CTCB07 2938738 YP_062340.1 CDS Lxx14190 NC_006087.1 1465971 1466390 D identified by sequence similarity; hypothetical protein 1465971..1466390 Leifsonia xyli subsp. xyli str. CTCB07 2939272 YP_062341.1 CDS Lxx14200 NC_006087.1 1466387 1466572 R hypothetical protein complement(1466387..1466572) Leifsonia xyli subsp. xyli str. CTCB07 2939752 YP_062342.1 CDS Lxx14210 NC_006087.1 1466653 1467276 R identified by sequence similarity; hypothetical protein complement(1466653..1467276) Leifsonia xyli subsp. xyli str. CTCB07 2940615 YP_062343.1 CDS Lxx14220 NC_006087.1 1467260 1468021 R identified by sequence similarity; ABC-type cobalt transport system complement(1467260..1468021) Leifsonia xyli subsp. xyli str. CTCB07 2939706 YP_062344.1 CDS Lxx14230 NC_006087.1 1468036 1469553 R identified by sequence similarity; ABC transporter ATP-binding protein complement(1468036..1469553) Leifsonia xyli subsp. xyli str. CTCB07 2940062 YP_062345.1 CDS ykoE NC_006087.1 1469559 1470173 R identified by sequence similarity; ABC transporter permease complement(1469559..1470173) Leifsonia xyli subsp. xyli str. CTCB07 2940355 YP_062346.1 CDS Lxx14250 NC_006087.1 1470386 1470634 R identified by sequence similarity; hypothetical protein complement(1470386..1470634) Leifsonia xyli subsp. xyli str. CTCB07 2938456 YP_062347.1 CDS staP NC_006087.1 1470785 1471702 D identified by sequence similarity; hypothetical protein 1470785..1471702 Leifsonia xyli subsp. xyli str. CTCB07 2939309 YP_062348.1 CDS Lxx14270 NC_006087.1 1471740 1472984 R identified by sequence similarity; DNA polymerase IV complement(1471740..1472984) Leifsonia xyli subsp. xyli str. CTCB07 2938459 YP_062349.1 CDS Lxx14275 NC_006087.1 1473071 1473178 D identified by sequence similarity; hypothetical protein 1473071..1473178 Leifsonia xyli subsp. xyli str. CTCB07 2939629 YP_062350.1 CDS Lxx14310 NC_006087.1 1475472 1475726 R identified by sequence similarity; hypothetical protein complement(1475472..1475726) Leifsonia xyli subsp. xyli str. CTCB07 2939683 YP_062351.1 CDS Lxx14320 NC_006087.1 1475857 1476342 R identified by sequence similarity; hypothetical protein complement(1475857..1476342) Leifsonia xyli subsp. xyli str. CTCB07 2940059 YP_062352.1 CDS gatB NC_006087.1 1478638 1480137 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1478638..1480137) Leifsonia xyli subsp. xyli str. CTCB07 2939786 YP_062353.1 CDS gatA NC_006087.1 1480137 1481684 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1480137..1481684) Leifsonia xyli subsp. xyli str. CTCB07 2938499 YP_062354.1 CDS gatC NC_006087.1 1481702 1481998 R identified by sequence similarity; glutamyl-tRNA amidotransferase subunit C complement(1481702..1481998) Leifsonia xyli subsp. xyli str. CTCB07 2939121 YP_062355.1 CDS Lxx14370 NC_006087.1 1482251 1483606 R identified by sequence similarity; hypothetical protein complement(1482251..1483606) Leifsonia xyli subsp. xyli str. CTCB07 2939240 YP_062356.2 CDS ligA NC_006087.1 1483761 1486028 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(1483761..1486028) Leifsonia xyli subsp. xyli str. CTCB07 2938486 YP_062357.1 CDS mnmA NC_006087.1 1486109 1487209 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1486109..1487209) Leifsonia xyli subsp. xyli str. CTCB07 2938962 YP_062358.1 CDS Lxx14400 NC_006087.1 1487255 1487440 R hypothetical protein complement(1487255..1487440) Leifsonia xyli subsp. xyli str. CTCB07 2940467 YP_062359.1 CDS nifS NC_006087.1 1487453 1488631 R identified by sequence similarity; cysteine desulfurase complement(1487453..1488631) Leifsonia xyli subsp. xyli str. CTCB07 2938260 YP_062360.1 CDS treX NC_006087.1 1488686 1489306 D identified by sequence similarity; glycogen debranching protein 1488686..1489306 Leifsonia xyli subsp. xyli str. CTCB07 2939678 YP_062361.1 CDS tnp NC_006087.1 1489552 1490763 D identified by sequence similarity; transposase, ISlxx5 1489552..1490763 Leifsonia xyli subsp. xyli str. CTCB07 2940113 YP_062362.1 CDS Lxx14450 NC_006087.1 1492658 1492765 D hypothetical protein 1492658..1492765 Leifsonia xyli subsp. xyli str. CTCB07 2938570 YP_062363.1 CDS Lxx14445 NC_006087.1 1493988 1495355 D identified by sequence similarity; acyl-CoA synthetase 1493988..1495355 Leifsonia xyli subsp. xyli str. CTCB07 2940544 YP_062364.1 CDS Lxx14457 NC_006087.1 1498435 1498827 R identified by sequence similarity; hypothetical protein complement(1498435..1498827) Leifsonia xyli subsp. xyli str. CTCB07 2939852 YP_062365.1 CDS uppS NC_006087.1 1499188 1499994 R identified by sequence similarity; undecaprenyl pyrophosphate synthetase complement(1499188..1499994) Leifsonia xyli subsp. xyli str. CTCB07 2939509 YP_062366.1 CDS recO NC_006087.1 1499991 1500740 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(1499991..1500740) Leifsonia xyli subsp. xyli str. CTCB07 2938985 YP_062367.1 CDS Lxx14480 NC_006087.1 1500773 1501531 D identified by sequence similarity; hypothetical protein 1500773..1501531 Leifsonia xyli subsp. xyli str. CTCB07 2939097 YP_062368.2 CDS leuA NC_006087.1 1501628 1503373 R identified by sequence similarity; 2-isopropylmalate synthase complement(1501628..1503373) Leifsonia xyli subsp. xyli str. CTCB07 2939256 YP_062369.1 CDS lysX NC_006087.1 1503539 1505929 R identified by sequence similarity; lysyl-tRNA synthetase complement(1503539..1505929) Leifsonia xyli subsp. xyli str. CTCB07 2939666 YP_062370.1 CDS Lxx14510 NC_006087.1 1506082 1507392 R identified by sequence similarity; hypothetical protein complement(1506082..1507392) Leifsonia xyli subsp. xyli str. CTCB07 2939987 YP_062371.1 CDS Lxx14520 NC_006087.1 1507499 1508767 R identified by sequence similarity; ABC transporter permease complement(1507499..1508767) Leifsonia xyli subsp. xyli str. CTCB07 2939635 YP_062372.1 CDS Lxx14530 NC_006087.1 1508935 1509666 R identified by sequence similarity; ABC transporter ATP-binding protein complement(1508935..1509666) Leifsonia xyli subsp. xyli str. CTCB07 2939241 YP_062373.1 CDS Lxx14540 NC_006087.1 1509765 1510436 R identified by sequence similarity; two-component system regulatory protein complement(1509765..1510436) Leifsonia xyli subsp. xyli str. CTCB07 2938736 YP_062374.1 CDS baeS NC_006087.1 1510439 1511752 R identified by sequence similarity; two-component system sensor protein complement(1510439..1511752) Leifsonia xyli subsp. xyli str. CTCB07 2939922 YP_062375.1 CDS era NC_006087.1 1514296 1515189 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1514296..1515189) Leifsonia xyli subsp. xyli str. CTCB07 2938781 YP_062376.1 CDS tlyC NC_006087.1 1515186 1516496 R identified by sequence similarity; hemolysin complement(1515186..1516496) Leifsonia xyli subsp. xyli str. CTCB07 2940088 YP_062377.1 CDS ybeY NC_006087.1 1516545 1517006 R identified by sequence similarity; metalloprotease complement(1516545..1517006) Leifsonia xyli subsp. xyli str. CTCB07 2940555 YP_062378.1 CDS phoH NC_006087.1 1517003 1518106 R identified by sequence similarity; phosphate starvation-induced protein complement(1517003..1518106) Leifsonia xyli subsp. xyli str. CTCB07 2938451 YP_062379.1 CDS Lxx14620 NC_006087.1 1518093 1518491 R identified by sequence similarity; hypothetical protein complement(1518093..1518491) Leifsonia xyli subsp. xyli str. CTCB07 2939356 YP_062380.1 CDS Lxx14630 NC_006087.1 1518488 1519213 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1518488..1519213) Leifsonia xyli subsp. xyli str. CTCB07 2939501 YP_062381.1 CDS dnaJ NC_006087.1 1519215 1520324 R identified by sequence similarity; DnaJ protein complement(1519215..1520324) Leifsonia xyli subsp. xyli str. CTCB07 2939676 YP_062382.1 CDS hrcA NC_006087.1 1520395 1521414 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(1520395..1521414) Leifsonia xyli subsp. xyli str. CTCB07 2938705 YP_062383.1 CDS Lxx14660 NC_006087.1 1521658 1522035 D identified by sequence similarity; hypothetical protein 1521658..1522035 Leifsonia xyli subsp. xyli str. CTCB07 2939770 YP_062384.1 CDS hemN NC_006087.1 1522048 1523289 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1522048..1523289) Leifsonia xyli subsp. xyli str. CTCB07 2940535 YP_062385.1 CDS Lxx14680 NC_006087.1 1523289 1523864 R identified by sequence similarity; hypothetical protein complement(1523289..1523864) Leifsonia xyli subsp. xyli str. CTCB07 2939091 YP_062386.1 CDS lepA NC_006087.1 1524052 1525902 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1524052..1525902) Leifsonia xyli subsp. xyli str. CTCB07 2938960 YP_062387.1 CDS Lxx14700 NC_006087.1 1526254 1527219 D identified by sequence similarity; NAD dependent epimerase/dehydratase 1526254..1527219 Leifsonia xyli subsp. xyli str. CTCB07 2939268 YP_062388.1 CDS rpsT NC_006087.1 1527326 1527586 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1527326..1527586 Leifsonia xyli subsp. xyli str. CTCB07 2939566 YP_062389.1 CDS Lxx14720 NC_006087.1 1527708 1528748 R identified by sequence similarity; DNA polymerase III subunit delta complement(1527708..1528748) Leifsonia xyli subsp. xyli str. CTCB07 2939563 YP_062390.1 CDS Lxx14750 NC_006087.1 1533301 1534803 R identified by sequence similarity; sugar transporter complement(1533301..1534803) Leifsonia xyli subsp. xyli str. CTCB07 2938793 YP_062391.1 CDS smf NC_006087.1 1537083 1538318 R identified by sequence similarity; DNA processing factor complement(1537083..1538318) Leifsonia xyli subsp. xyli str. CTCB07 2940536 YP_062392.1 CDS comM NC_006087.1 1538785 1540320 R identified by sequence similarity; competence protein M complement(1538785..1540320) Leifsonia xyli subsp. xyli str. CTCB07 2940212 YP_062393.1 CDS Lxx14785 NC_006087.1 1540320 1540676 R identified by sequence similarity; hypothetical protein complement(1540320..1540676) Leifsonia xyli subsp. xyli str. CTCB07 2938659 YP_062394.1 CDS Lxx14800 NC_006087.1 1540822 1541145 R identified by sequence similarity; hypothetical protein complement(1540822..1541145) Leifsonia xyli subsp. xyli str. CTCB07 2938495 YP_062395.1 CDS rnhB NC_006087.1 1541158 1541838 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(1541158..1541838) Leifsonia xyli subsp. xyli str. CTCB07 2939409 YP_062396.1 CDS rplS NC_006087.1 1542063 1542410 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1542063..1542410) Leifsonia xyli subsp. xyli str. CTCB07 2939254 YP_062397.1 CDS map NC_006087.1 1543168 1543977 D identified by sequence similarity; methionine aminopeptidase 1543168..1543977 Leifsonia xyli subsp. xyli str. CTCB07 2938350 YP_062398.1 CDS trmD NC_006087.1 1544001 1544684 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1544001..1544684) Leifsonia xyli subsp. xyli str. CTCB07 2939715 YP_062399.1 CDS Lxx14870 NC_006087.1 1544707 1545879 R identified by sequence similarity; sugar transporter complement(1544707..1545879) Leifsonia xyli subsp. xyli str. CTCB07 2940237 YP_062400.1 CDS Lxx14860 NC_006087.1 1545904 1546536 D identified by sequence similarity; hypothetical protein 1545904..1546536 Leifsonia xyli subsp. xyli str. CTCB07 2938660 YP_062401.1 CDS rimM NC_006087.1 1546658 1547311 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1546658..1547311) Leifsonia xyli subsp. xyli str. CTCB07 2939604 YP_062402.1 CDS Lxx14890 NC_006087.1 1547313 1547543 R identified by sequence similarity; hypothetical protein complement(1547313..1547543) Leifsonia xyli subsp. xyli str. CTCB07 2939829 YP_062403.1 CDS rpsP NC_006087.1 1547548 1548009 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1547548..1548009) Leifsonia xyli subsp. xyli str. CTCB07 2939973 YP_062404.1 CDS Lxx14910 NC_006087.1 1548210 1549346 D identified by sequence similarity; hypothetical protein 1548210..1549346 Leifsonia xyli subsp. xyli str. CTCB07 2938439 YP_062405.1 CDS Lxx14920 NC_006087.1 1549477 1550049 D identified by sequence similarity; hypothetical protein 1549477..1550049 Leifsonia xyli subsp. xyli str. CTCB07 2940564 YP_062406.1 CDS tnp NC_006087.1 1550882 1552093 D identified by sequence similarity; transposase, ISlxx5 1550882..1552093 Leifsonia xyli subsp. xyli str. CTCB07 2939948 YP_062407.1 CDS Lxx14940 NC_006087.1 1552099 1553442 D identified by sequence similarity; glycoprotein 1552099..1553442 Leifsonia xyli subsp. xyli str. CTCB07 2938454 YP_062408.1 CDS ffh NC_006087.1 1553508 1555079 R identified by sequence similarity; signal recognition particle subunit SRP54 complement(1553508..1555079) Leifsonia xyli subsp. xyli str. CTCB07 2940373 YP_062409.1 CDS Lxx14960 NC_006087.1 1555123 1555623 R hypothetical protein complement(1555123..1555623) Leifsonia xyli subsp. xyli str. CTCB07 2940385 YP_062410.1 CDS ftsY NC_006087.1 1555623 1556498 R identified by sequence similarity; signal recognition particle receptor complement(1555623..1556498) Leifsonia xyli subsp. xyli str. CTCB07 2938418 YP_062411.1 CDS smc NC_006087.1 1556595 1560140 R identified by sequence similarity; chromosome segregation protein complement(1556595..1560140) Leifsonia xyli subsp. xyli str. CTCB07 2940162 YP_062412.1 CDS Lxx14980 NC_006087.1 1560255 1561664 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1560255..1561664 Leifsonia xyli subsp. xyli str. CTCB07 2940556 YP_062413.1 CDS livF NC_006087.1 1561680 1562039 R identified by sequence similarity; ABC transporter ATP-binding protein complement(1561680..1562039) Leifsonia xyli subsp. xyli str. CTCB07 2939938 YP_062414.1 CDS Lxx15010 NC_006087.1 1562043 1562318 R identified by sequence similarity; ABC transporter ATP-binding protein complement(1562043..1562318) Leifsonia xyli subsp. xyli str. CTCB07 2939397 YP_062415.1 CDS Lxx15020 NC_006087.1 1562380 1563669 R identified by sequence similarity; ABC transporter ATP-binding protein complement(1562380..1563669) Leifsonia xyli subsp. xyli str. CTCB07 2940161 YP_062416.1 CDS Lxx15030 NC_006087.1 1564765 1565097 R identified by sequence similarity; hypothetical protein complement(1564765..1565097) Leifsonia xyli subsp. xyli str. CTCB07 2938312 YP_062417.1 CDS ctaD NC_006087.1 1565192 1566865 R identified by sequence similarity; cytochrome C oxidase subunit I complement(1565192..1566865) Leifsonia xyli subsp. xyli str. CTCB07 2940437 YP_062418.1 CDS ctaC NC_006087.1 1566949 1567839 R identified by sequence similarity; cytochrome C oxidase subunit II complement(1566949..1567839) Leifsonia xyli subsp. xyli str. CTCB07 2938528 YP_062419.1 CDS Lxx15060 NC_006087.1 1567986 1568342 R identified by sequence similarity; hypothetical protein complement(1567986..1568342) Leifsonia xyli subsp. xyli str. CTCB07 2938699 YP_062420.1 CDS Lxx15080 NC_006087.1 1568421 1569776 R identified by sequence similarity; hypothetical protein complement(1568421..1569776) Leifsonia xyli subsp. xyli str. CTCB07 2939717 YP_062421.1 CDS Lxx15070 NC_006087.1 1569841 1570482 D identified by sequence similarity; hypothetical protein 1569841..1570482 Leifsonia xyli subsp. xyli str. CTCB07 2938452 YP_062422.1 CDS Lxx15090 NC_006087.1 1570484 1571362 D catalyzes the endonucleolytic cleavage to 5'-phosphomonomer; ribonuclease H 1570484..1571362 Leifsonia xyli subsp. xyli str. CTCB07 2939295 YP_062423.1 CDS pyrD NC_006087.1 1571417 1572448 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(1571417..1572448) Leifsonia xyli subsp. xyli str. CTCB07 2940206 YP_062424.1 CDS nrdR NC_006087.1 1572475 1572948 R identified by sequence similarity; transcriptional regulator NrdR complement(1572475..1572948) Leifsonia xyli subsp. xyli str. CTCB07 2940562 YP_062425.1 CDS hisD NC_006087.1 1572987 1574297 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(1572987..1574297) Leifsonia xyli subsp. xyli str. CTCB07 2940014 YP_062426.1 CDS Lxx15130 NC_006087.1 1574363 1574878 D identified by sequence similarity; flavin-dependent reductase 1574363..1574878 Leifsonia xyli subsp. xyli str. CTCB07 2938904 YP_062427.1 CDS dnaE NC_006087.1 1575846 1579361 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(1575846..1579361) Leifsonia xyli subsp. xyli str. CTCB07 2939684 YP_062428.1 CDS rlu NC_006087.1 1579489 1580409 R identified by sequence similarity; ribosomal large subunit pseudouridine synthase complement(1579489..1580409) Leifsonia xyli subsp. xyli str. CTCB07 2939377 YP_062429.1 CDS lspA NC_006087.1 1580409 1580921 R identified by sequence similarity; signal peptidase II complement(1580409..1580921) Leifsonia xyli subsp. xyli str. CTCB07 2939351 YP_062430.1 CDS Lxx15190 NC_006087.1 1580992 1581813 R identified by sequence similarity; cell division initiation protein complement(1580992..1581813) Leifsonia xyli subsp. xyli str. CTCB07 2939754 YP_062431.1 CDS Lxx15200 NC_006087.1 1581958 1582254 R identified by sequence similarity; hypothetical protein complement(1581958..1582254) Leifsonia xyli subsp. xyli str. CTCB07 2940191 YP_062432.1 CDS Lxx15210 NC_006087.1 1582337 1582819 R identified by sequence similarity; hypothetical protein complement(1582337..1582819) Leifsonia xyli subsp. xyli str. CTCB07 2940328 YP_062433.1 CDS Lxx15220 NC_006087.1 1582907 1583551 R identified by sequence similarity; hypothetical protein complement(1582907..1583551) Leifsonia xyli subsp. xyli str. CTCB07 2939958 YP_062434.1 CDS ftsZ NC_006087.1 1583577 1584725 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(1583577..1584725) Leifsonia xyli subsp. xyli str. CTCB07 2938365 YP_062435.1 CDS ftsQ NC_006087.1 1584906 1585787 R identified by sequence similarity; cell division protein FtsQ complement(1584906..1585787) Leifsonia xyli subsp. xyli str. CTCB07 2940146 YP_062436.1 CDS murC NC_006087.1 1585875 1587269 R identified by sequence similarity; UDP-N-acetylmuramate-alanine ligase complement(1585875..1587269) Leifsonia xyli subsp. xyli str. CTCB07 2940458 YP_062437.1 CDS murG NC_006087.1 1587329 1588405 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(1587329..1588405) Leifsonia xyli subsp. xyli str. CTCB07 2939801 YP_062438.1 CDS ftsW NC_006087.1 1588402 1589616 R identified by sequence similarity; cell division protein complement(1588402..1589616) Leifsonia xyli subsp. xyli str. CTCB07 2940250 YP_062439.1 CDS murD NC_006087.1 1589576 1591129 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(1589576..1591129) Leifsonia xyli subsp. xyli str. CTCB07 2940407 YP_062440.1 CDS mraY NC_006087.1 1591126 1592241 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1591126..1592241) Leifsonia xyli subsp. xyli str. CTCB07 2938450 YP_062441.1 CDS murF NC_006087.1 1592238 1593665 R identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase complement(1592238..1593665) Leifsonia xyli subsp. xyli str. CTCB07 2940462 YP_062442.1 CDS murE NC_006087.1 1593666 1595210 R identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1593666..1595210) Leifsonia xyli subsp. xyli str. CTCB07 2939661 YP_062443.1 CDS Lxx15320 NC_006087.1 1595222 1596964 R identified by sequence similarity; penicillin binding protein transpeptidase domain-containing protein complement(1595222..1596964) Leifsonia xyli subsp. xyli str. CTCB07 2938433 YP_062444.1 CDS Lxx15330 NC_006087.1 1596988 1597656 R identified by sequence similarity; hypothetical protein complement(1596988..1597656) Leifsonia xyli subsp. xyli str. CTCB07 2940061 YP_062445.1 CDS mraW NC_006087.1 1597668 1598645 R identified by sequence similarity; S-adenosyl-methyltransferase MraW complement(1597668..1598645) Leifsonia xyli subsp. xyli str. CTCB07 2939576 YP_062446.1 CDS Lxx15350 NC_006087.1 1598749 1599180 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(1598749..1599180) Leifsonia xyli subsp. xyli str. CTCB07 2939674 YP_062447.1 CDS Lxx15360 NC_006087.1 1599524 1599901 R identified by sequence similarity; hypothetical protein complement(1599524..1599901) Leifsonia xyli subsp. xyli str. CTCB07 2940387 YP_062448.1 CDS gds NC_006087.1 1599982 1601100 D identified by sequence similarity; geranylgeranyl pyrophosphate synthase 1599982..1601100 Leifsonia xyli subsp. xyli str. CTCB07 2939573 YP_062449.1 CDS Lxx15380 NC_006087.1 1601113 1601487 R identified by sequence similarity; hypothetical protein complement(1601113..1601487) Leifsonia xyli subsp. xyli str. CTCB07 2940094 YP_062450.1 CDS Lxx15390 NC_006087.1 1601604 1602665 D identified by sequence similarity; lipoprotein 1601604..1602665 Leifsonia xyli subsp. xyli str. CTCB07 2939589 YP_062451.1 CDS pkaF NC_006087.1 1602751 1604652 D identified by sequence similarity; serine/threonine kinase 1602751..1604652 Leifsonia xyli subsp. xyli str. CTCB07 2938429 YP_062452.1 CDS aro NC_006087.1 1604818 1606146 R identified by sequence similarity; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1604818..1606146) Leifsonia xyli subsp. xyli str. CTCB07 2939400 YP_062453.1 CDS plsC NC_006087.1 1606284 1606973 R identified by sequence similarity; 1-acylglycerol-3-phosphate O-acyltransferase complement(1606284..1606973) Leifsonia xyli subsp. xyli str. CTCB07 2939815 YP_062454.1 CDS glkA NC_006087.1 1607016 1607879 R identified by sequence similarity; glucokinase complement(1607016..1607879) Leifsonia xyli subsp. xyli str. CTCB07 2939232 YP_062455.1 CDS fadD NC_006087.1 1608121 1609947 D identified by sequence similarity; long-chain-fatty-acid-CoA ligase 1608121..1609947 Leifsonia xyli subsp. xyli str. CTCB07 2940184 YP_062456.1 CDS Lxx15450 NC_006087.1 1610085 1610576 R identified by sequence similarity; polypeptide deformylase complement(1610085..1610576) Leifsonia xyli subsp. xyli str. CTCB07 2939114 YP_062457.1 CDS Lxx15460 NC_006087.1 1610627 1611937 R identified by sequence similarity; hypothetical protein complement(1610627..1611937) Leifsonia xyli subsp. xyli str. CTCB07 2940112 YP_062458.1 CDS pycA NC_006087.1 1611996 1615400 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(1611996..1615400) Leifsonia xyli subsp. xyli str. CTCB07 2938480 YP_062459.1 CDS parA NC_006087.1 1615472 1616290 D identified by sequence similarity; plasmid partitioning protein 1615472..1616290 Leifsonia xyli subsp. xyli str. CTCB07 2939224 YP_062460.1 CDS Lxx15490 NC_006087.1 1616396 1616998 R identified by sequence similarity; hypothetical protein complement(1616396..1616998) Leifsonia xyli subsp. xyli str. CTCB07 2939274 YP_062461.1 CDS Lxx15500 NC_006087.1 1617075 1617767 R identified by sequence similarity; hypothetical protein complement(1617075..1617767) Leifsonia xyli subsp. xyli str. CTCB07 2940131 YP_062462.1 CDS Lxx15505 NC_006087.1 1617767 1618150 R identified by sequence similarity; hypothetical protein complement(1617767..1618150) Leifsonia xyli subsp. xyli str. CTCB07 2939511 YP_062463.1 CDS pgsA NC_006087.1 1618275 1618904 R identified by sequence similarity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1618275..1618904) Leifsonia xyli subsp. xyli str. CTCB07 2938448 YP_062464.1 CDS Lxx15530 NC_006087.1 1619574 1620080 D identified by sequence similarity; hypothetical protein 1619574..1620080 Leifsonia xyli subsp. xyli str. CTCB07 2939690 YP_062465.1 CDS Lxx15550 NC_006087.1 1620067 1620423 D identified by sequence similarity; ribosome-associated heat shock protein 1620067..1620423 Leifsonia xyli subsp. xyli str. CTCB07 2940423 YP_062466.1 CDS Lxx15555 NC_006087.1 1620434 1621378 R identified by sequence similarity; heat shock protein complement(1620434..1621378) Leifsonia xyli subsp. xyli str. CTCB07 2940547 YP_062467.1 CDS Lxx15560 NC_006087.1 1621506 1621886 D identified by sequence similarity; lyase 1621506..1621886 Leifsonia xyli subsp. xyli str. CTCB07 2939312 YP_062468.1 CDS ubiA NC_006087.1 1621945 1622820 R UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase complement(1621945..1622820) Leifsonia xyli subsp. xyli str. CTCB07 2939885 YP_062469.1 CDS lctB NC_006087.1 1622817 1623140 R identified by sequence similarity; lycopene e-cyclase isoprenoid transferase B complement(1622817..1623140) Leifsonia xyli subsp. xyli str. CTCB07 2940601 YP_062470.1 CDS crtYe NC_006087.1 1623137 1623460 R identified by sequence similarity; C50 carotenoid epsilon cyclase complement(1623137..1623460) Leifsonia xyli subsp. xyli str. CTCB07 2938665 YP_062471.1 CDS crtI NC_006087.1 1623457 1625046 R identified by sequence similarity; phytoene dehydrogenase complement(1623457..1625046) Leifsonia xyli subsp. xyli str. CTCB07 2939957 YP_062472.1 CDS crtB NC_006087.1 1625043 1625939 R identified by sequence similarity; phytoene synthase complement(1625043..1625939) Leifsonia xyli subsp. xyli str. CTCB07 2938437 YP_062473.1 CDS crtE NC_006087.1 1625936 1627051 R identified by sequence similarity; geranylgeranyl pyrophosphate synthase complement(1625936..1627051) Leifsonia xyli subsp. xyli str. CTCB07 2938298 YP_062474.1 CDS Lxx15640 NC_006087.1 1627121 1627627 D identified by sequence similarity; MarR family transcriptional regulator 1627121..1627627 Leifsonia xyli subsp. xyli str. CTCB07 2940070 YP_062475.1 CDS Lxx15650 NC_006087.1 1627602 1629092 R identified by sequence similarity; nucleoside-diphosphate-sugar epimerase complement(1627602..1629092) Leifsonia xyli subsp. xyli str. CTCB07 2939789 YP_062476.1 CDS Lxx15660 NC_006087.1 1629201 1629539 D hypothetical protein 1629201..1629539 Leifsonia xyli subsp. xyli str. CTCB07 2940604 YP_062477.1 CDS Lxx15670 NC_006087.1 1629861 1630787 R identified by sequence similarity; ECF subfamily RNA polymerase sigma-70 factor complement(1629861..1630787) Leifsonia xyli subsp. xyli str. CTCB07 2939746 YP_062478.1 CDS Lxx15680 NC_006087.1 1630979 1631857 R identified by sequence similarity; hypothetical protein complement(1630979..1631857) Leifsonia xyli subsp. xyli str. CTCB07 2940032 YP_062479.1 CDS Lxx15760 NC_006087.1 1636194 1636838 R identified by sequence similarity; ABC transporter permease complement(1636194..1636838) Leifsonia xyli subsp. xyli str. CTCB07 2939965 YP_062480.1 CDS proV NC_006087.1 1636853 1637875 R identified by sequence similarity; glycine betaine/proline porter complement(1636853..1637875) Leifsonia xyli subsp. xyli str. CTCB07 2939267 YP_062481.1 CDS Lxx15780 NC_006087.1 1637880 1638725 R identified by sequence similarity; ABC-type transport systems, periplasmic component complement(1637880..1638725) Leifsonia xyli subsp. xyli str. CTCB07 2938444 YP_062482.1 CDS Lxx15790 NC_006087.1 1638957 1642082 R identified by sequence similarity; hypothetical protein complement(1638957..1642082) Leifsonia xyli subsp. xyli str. CTCB07 2940552 YP_062483.1 CDS Lxx15800 NC_006087.1 1643308 1643439 D hypothetical protein 1643308..1643439 Leifsonia xyli subsp. xyli str. CTCB07 2940442 YP_062484.1 CDS tnp NC_006087.1 1644326 1645537 D identified by sequence similarity; transposase, ISlxx5 1644326..1645537 Leifsonia xyli subsp. xyli str. CTCB07 2940022 YP_062485.1 CDS Lxx15820 NC_006087.1 1646691 1647551 R identified by sequence similarity; hypothetical protein complement(1646691..1647551) Leifsonia xyli subsp. xyli str. CTCB07 2938333 YP_062486.1 CDS hisA NC_006087.1 1647535 1648281 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis; phosphoribosyl isomerase A complement(1647535..1648281) Leifsonia xyli subsp. xyli str. CTCB07 2939510 YP_062487.1 CDS hisH NC_006087.1 1648328 1648957 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1648328..1648957) Leifsonia xyli subsp. xyli str. CTCB07 2939440 YP_062488.1 CDS hisB NC_006087.1 1648954 1649556 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(1648954..1649556) Leifsonia xyli subsp. xyli str. CTCB07 2940203 YP_062489.1 CDS hisC1 NC_006087.1 1649553 1650668 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1649553..1650668) Leifsonia xyli subsp. xyli str. CTCB07 2938704 YP_062490.1 CDS Lxx15870 NC_006087.1 1651385 1651615 R identified by sequence similarity; hypothetical protein complement(1651385..1651615) Leifsonia xyli subsp. xyli str. CTCB07 2939128 YP_062491.1 CDS lexA NC_006087.1 1652082 1652756 D Represses a number of genes involved in the response to DNA damage; LexA repressor 1652082..1652756 Leifsonia xyli subsp. xyli str. CTCB07 2938969 YP_062492.1 CDS Lxx15885 NC_006087.1 1652831 1653505 R identified by sequence similarity; GntR family transcriptional regulator complement(1652831..1653505) Leifsonia xyli subsp. xyli str. CTCB07 2938915 YP_062493.1 CDS fsr NC_006087.1 1653730 1655001 D identified by sequence similarity; membrane efflux protein (fosmidomycin resistance) 1653730..1655001 Leifsonia xyli subsp. xyli str. CTCB07 2940461 YP_062494.1 CDS hflX NC_006087.1 1660036 1661505 R identified by sequence similarity; GTP-binding protein complement(1660036..1661505) Leifsonia xyli subsp. xyli str. CTCB07 2940570 YP_062495.1 CDS Lxx15950 NC_006087.1 1661611 1662222 D identified by sequence similarity; hypothetical protein 1661611..1662222 Leifsonia xyli subsp. xyli str. CTCB07 2938440 YP_062496.1 CDS dapF NC_006087.1 1662267 1663145 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(1662267..1663145) Leifsonia xyli subsp. xyli str. CTCB07 2938253 YP_062497.1 CDS miaA NC_006087.1 1663148 1663939 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1663148..1663939) Leifsonia xyli subsp. xyli str. CTCB07 2939541 YP_062498.1 CDS Lxx15990 NC_006087.1 1664074 1665681 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1664074..1665681) Leifsonia xyli subsp. xyli str. CTCB07 2940344 YP_062499.1 CDS Lxx16000 NC_006087.1 1665810 1665968 R hypothetical protein complement(1665810..1665968) Leifsonia xyli subsp. xyli str. CTCB07 2938934 YP_062500.1 CDS Lxx16020 NC_006087.1 1667147 1667755 R hypothetical protein complement(1667147..1667755) Leifsonia xyli subsp. xyli str. CTCB07 2940255 YP_062501.1 CDS recA NC_006087.1 1667787 1668911 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1667787..1668911) Leifsonia xyli subsp. xyli str. CTCB07 2938520 YP_062502.1 CDS Lxx16040 NC_006087.1 1669029 1669274 R identified by sequence similarity; hypothetical protein complement(1669029..1669274) Leifsonia xyli subsp. xyli str. CTCB07 2938425 YP_062503.1 CDS Lxx16050 NC_006087.1 1669322 1669633 R identified by sequence similarity; hypothetical protein complement(1669322..1669633) Leifsonia xyli subsp. xyli str. CTCB07 2938371 YP_062504.1 CDS Lxx16060 NC_006087.1 1669781 1670266 R identified by sequence similarity; CinA-like protein complement(1669781..1670266) Leifsonia xyli subsp. xyli str. CTCB07 2938782 YP_062505.1 CDS pgsA NC_006087.1 1670292 1670861 R identified by sequence similarity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1670292..1670861) Leifsonia xyli subsp. xyli str. CTCB07 2940201 YP_062506.1 CDS ftsK NC_006087.1 1670917 1673706 R identified by sequence similarity; cell division protein complement(1670917..1673706) Leifsonia xyli subsp. xyli str. CTCB07 2938398 YP_062507.1 CDS Lxx16090 NC_006087.1 1674015 1675691 R identified by sequence similarity; hypothetical protein complement(1674015..1675691) Leifsonia xyli subsp. xyli str. CTCB07 2940451 YP_062508.1 CDS Lxx16110 NC_006087.1 1676957 1677382 D identified by sequence similarity; ATP/GTP binding protein 1676957..1677382 Leifsonia xyli subsp. xyli str. CTCB07 2939848 YP_062509.1 CDS Lxx16130 NC_006087.1 1677413 1678303 D identified by sequence similarity; hypothetical protein 1677413..1678303 Leifsonia xyli subsp. xyli str. CTCB07 2939359 YP_062510.1 CDS Lxx16140 NC_006087.1 1678317 1678748 R identified by sequence similarity; hypothetical protein complement(1678317..1678748) Leifsonia xyli subsp. xyli str. CTCB07 2939282 YP_062511.1 CDS dapB NC_006087.1 1678785 1679552 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(1678785..1679552) Leifsonia xyli subsp. xyli str. CTCB07 2939496 YP_062512.1 CDS Lxx16170 NC_006087.1 1680109 1680690 R identified by sequence similarity; hypothetical protein complement(1680109..1680690) Leifsonia xyli subsp. xyli str. CTCB07 2940450 YP_062513.1 CDS pepR NC_006087.1 1680745 1682190 R identified by sequence similarity; zinc protease complement(1680745..1682190) Leifsonia xyli subsp. xyli str. CTCB07 2940349 YP_062514.1 CDS Lxx16190 NC_006087.1 1682280 1682864 D identified by sequence similarity; TetR family transcriptional regulator 1682280..1682864 Leifsonia xyli subsp. xyli str. CTCB07 2939423 YP_062515.1 CDS Lxx16200 NC_006087.1 1682868 1683812 R identified by sequence similarity; oxidoreductase complement(1682868..1683812) Leifsonia xyli subsp. xyli str. CTCB07 2939562 YP_062516.1 CDS gltA NC_006087.1 1686991 1688268 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1686991..1688268) Leifsonia xyli subsp. xyli str. CTCB07 2940588 YP_062517.1 CDS Lxx16230 NC_006087.1 1688459 1689577 R catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis; N-succinyldiaminopimelate aminotransferase complement(1688459..1689577) Leifsonia xyli subsp. xyli str. CTCB07 2939441 YP_062518.1 CDS Lxx16240 NC_006087.1 1689579 1689899 R identified by sequence similarity; ferredoxin complement(1689579..1689899) Leifsonia xyli subsp. xyli str. CTCB07 2938979 YP_062519.1 CDS Lxx16250 NC_006087.1 1689985 1690359 R identified by sequence similarity; hypothetical protein complement(1689985..1690359) Leifsonia xyli subsp. xyli str. CTCB07 2940300 YP_062520.1 CDS Lxx16260 NC_006087.1 1690486 1691352 D identified by sequence similarity; hypothetical protein 1690486..1691352 Leifsonia xyli subsp. xyli str. CTCB07 2939913 YP_062521.1 CDS Lxx16270 NC_006087.1 1691397 1692602 D identified by sequence similarity; lipoprotein 1691397..1692602 Leifsonia xyli subsp. xyli str. CTCB07 2938641 YP_062522.1 CDS Lxx16280 NC_006087.1 1692610 1693920 D identified by sequence similarity; hypothetical protein 1692610..1693920 Leifsonia xyli subsp. xyli str. CTCB07 2940352 YP_062523.1 CDS Lxx16290 NC_006087.1 1694032 1695948 R identified by sequence similarity; GTP-binding protein elongation factor complement(1694032..1695948) Leifsonia xyli subsp. xyli str. CTCB07 2939542 YP_062524.1 CDS dppB NC_006087.1 1698567 1699496 R identified by sequence similarity; ABC transporter permease complement(1698567..1699496) Leifsonia xyli subsp. xyli str. CTCB07 2940134 YP_062525.1 CDS dppA NC_006087.1 1699560 1701113 R identified by sequence similarity; ABC transporter solute-binding protein complement(1699560..1701113) Leifsonia xyli subsp. xyli str. CTCB07 2940166 YP_062526.1 CDS dppF NC_006087.1 1701457 1703262 R identified by sequence similarity; oligopeptide transporter complement(1701457..1703262) Leifsonia xyli subsp. xyli str. CTCB07 2940023 YP_062527.1 CDS Lxx16370 NC_006087.1 1703382 1704008 D identified by sequence similarity; hypothetical protein 1703382..1704008 Leifsonia xyli subsp. xyli str. CTCB07 2940069 YP_062528.1 CDS oppC NC_006087.1 1704056 1705066 R identified by sequence similarity; ABC transporter permease complement(1704056..1705066) Leifsonia xyli subsp. xyli str. CTCB07 2939117 YP_062529.1 CDS oppB NC_006087.1 1705066 1706532 R identified by sequence similarity; ABC transporter permease complement(1705066..1706532) Leifsonia xyli subsp. xyli str. CTCB07 2940153 YP_062530.1 CDS oppA NC_006087.1 1706791 1708578 R identified by sequence similarity; dipeptide porter complement(1706791..1708578) Leifsonia xyli subsp. xyli str. CTCB07 2940116 YP_062531.1 CDS Lxx16410 NC_006087.1 1708861 1709655 D identified by sequence similarity; hypothetical protein 1708861..1709655 Leifsonia xyli subsp. xyli str. CTCB07 2939953 YP_062532.1 CDS Lxx16460 NC_006087.1 1714650 1715225 D identified by sequence similarity; TetR family transcriptional regulator 1714650..1715225 Leifsonia xyli subsp. xyli str. CTCB07 2940289 YP_062533.1 CDS fabG5 NC_006087.1 1715305 1716099 D identified by sequence similarity; oxidoreductase 1715305..1716099 Leifsonia xyli subsp. xyli str. CTCB07 2939628 YP_062534.1 CDS Lxx16480 NC_006087.1 1716261 1716518 D hypothetical protein 1716261..1716518 Leifsonia xyli subsp. xyli str. CTCB07 2938583 YP_062535.1 CDS nadA NC_006087.1 1717410 1718705 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1717410..1718705 Leifsonia xyli subsp. xyli str. CTCB07 2938515 YP_062536.1 CDS nadC NC_006087.1 1720204 1721064 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 1720204..1721064 Leifsonia xyli subsp. xyli str. CTCB07 2938416 YP_062537.1 CDS iscS NC_006087.1 1721061 1722206 D identified by sequence similarity; cysteine desulfurase 1721061..1722206 Leifsonia xyli subsp. xyli str. CTCB07 2940085 YP_062538.1 CDS Lxx16560 NC_006087.1 1723865 1724953 D identified by sequence similarity; hypothetical protein 1723865..1724953 Leifsonia xyli subsp. xyli str. CTCB07 2939997 YP_062539.1 CDS tnp NC_006087.1 1725095 1725556 D identified by sequence similarity; transposase, ISlxx4 1725095..1725556 Leifsonia xyli subsp. xyli str. CTCB07 2938299 YP_062540.1 CDS Lxx16580 NC_006087.1 1726488 1726676 R hypothetical protein complement(1726488..1726676) Leifsonia xyli subsp. xyli str. CTCB07 2938441 YP_062541.1 CDS Lxx16590 NC_006087.1 1726737 1727423 R identified by sequence similarity; hypothetical protein complement(1726737..1727423) Leifsonia xyli subsp. xyli str. CTCB07 2938348 YP_062542.1 CDS Lxx16600 NC_006087.1 1727694 1728014 R hypothetical protein complement(1727694..1728014) Leifsonia xyli subsp. xyli str. CTCB07 2939644 YP_062543.1 CDS Lxx16610 NC_006087.1 1728283 1729353 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1728283..1729353) Leifsonia xyli subsp. xyli str. CTCB07 2939151 YP_062544.1 CDS Lxx16640 NC_006087.1 1730151 1730729 D identified by sequence similarity; DNA polymerase III subunit epsilon 1730151..1730729 Leifsonia xyli subsp. xyli str. CTCB07 2939612 YP_062545.1 CDS Lxx16650 NC_006087.1 1730824 1732236 D identified by sequence similarity; sugar transporter 1730824..1732236 Leifsonia xyli subsp. xyli str. CTCB07 2939357 YP_062546.1 CDS Lxx16660 NC_006087.1 1732286 1733707 D identified by sequence similarity; hypothetical protein 1732286..1733707 Leifsonia xyli subsp. xyli str. CTCB07 2940439 YP_062547.1 CDS glpX NC_006087.1 1733862 1734863 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(1733862..1734863) Leifsonia xyli subsp. xyli str. CTCB07 2939916 YP_062548.1 CDS fba NC_006087.1 1735067 1736092 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 1735067..1736092 Leifsonia xyli subsp. xyli str. CTCB07 2940258 YP_062549.1 CDS Lxx16690 NC_006087.1 1736123 1736758 D hypothetical protein 1736123..1736758 Leifsonia xyli subsp. xyli str. CTCB07 2940123 YP_062550.1 CDS Lxx16700 NC_006087.1 1736846 1737748 R identified by sequence similarity; hypothetical protein complement(1736846..1737748) Leifsonia xyli subsp. xyli str. CTCB07 2938443 YP_062551.1 CDS ispH NC_006087.1 1741972 1742985 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1741972..1742985) Leifsonia xyli subsp. xyli str. CTCB07 2939793 YP_062552.1 CDS xseA NC_006087.1 1743008 1744387 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1743008..1744387 Leifsonia xyli subsp. xyli str. CTCB07 2940015 YP_062553.1 CDS xseB NC_006087.1 1744389 1744667 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1744389..1744667 Leifsonia xyli subsp. xyli str. CTCB07 2939378 YP_062554.1 CDS cynT NC_006087.1 1745317 1745988 D identified by sequence similarity; carbonic anhydrase 1745317..1745988 Leifsonia xyli subsp. xyli str. CTCB07 2938428 YP_062555.1 CDS fumC NC_006087.1 1746025 1747431 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1746025..1747431 Leifsonia xyli subsp. xyli str. CTCB07 2938961 YP_062556.1 CDS Lxx16820 NC_006087.1 1747708 1747992 R hypothetical protein complement(1747708..1747992) Leifsonia xyli subsp. xyli str. CTCB07 2939687 YP_062557.1 CDS phoH NC_006087.1 1748115 1749464 R identified by sequence similarity; PhoH-like protein complement(1748115..1749464) Leifsonia xyli subsp. xyli str. CTCB07 2939408 YP_062558.1 CDS Lxx16840 NC_006087.1 1749676 1750710 R identified by sequence similarity; hypothetical protein complement(1749676..1750710) Leifsonia xyli subsp. xyli str. CTCB07 2939854 YP_062559.1 CDS uppS NC_006087.1 1750867 1751661 R identified by sequence similarity; undecaprenyl pyrophosphate synthetase complement(1750867..1751661) Leifsonia xyli subsp. xyli str. CTCB07 2939539 YP_062560.1 CDS Lxx16860 NC_006087.1 1751756 1752559 D identified by sequence similarity; hemolysin III family protein 1751756..1752559 Leifsonia xyli subsp. xyli str. CTCB07 2939849 YP_062561.1 CDS Lxx16880 NC_006087.1 1752574 1752837 R hypothetical protein complement(1752574..1752837) Leifsonia xyli subsp. xyli str. CTCB07 2940459 YP_062562.1 CDS greA NC_006087.1 1753584 1754075 D identified by sequence similarity; transcription elongation factor 1753584..1754075 Leifsonia xyli subsp. xyli str. CTCB07 2939737 YP_062563.1 CDS ilvA NC_006087.1 1754148 1755398 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(1754148..1755398) Leifsonia xyli subsp. xyli str. CTCB07 2940446 YP_062564.1 CDS Lxx16910 NC_006087.1 1755452 1756693 R identified by sequence similarity; hypothetical protein complement(1755452..1756693) Leifsonia xyli subsp. xyli str. CTCB07 2939842 YP_062565.1 CDS Lxx16940 NC_006087.1 1758362 1758454 D hypothetical protein 1758362..1758454 Leifsonia xyli subsp. xyli str. CTCB07 2938279 YP_062566.1 CDS ftsW NC_006087.1 1760053 1761393 D identified by sequence similarity; cell division protein 1760053..1761393 Leifsonia xyli subsp. xyli str. CTCB07 2939619 YP_062567.1 CDS Lxx16960 NC_006087.1 1761403 1762614 D identified by sequence similarity; hypothetical protein 1761403..1762614 Leifsonia xyli subsp. xyli str. CTCB07 2938791 YP_062568.1 CDS Lxx16980 NC_006087.1 1763554 1764120 R identified by sequence similarity; LemA-like protein complement(1763554..1764120) Leifsonia xyli subsp. xyli str. CTCB07 2939512 YP_062569.1 CDS Lxx16990 NC_006087.1 1765136 1766614 D identified by sequence similarity; antifreeze glycopeptide AFGP polyprotein 1765136..1766614 Leifsonia xyli subsp. xyli str. CTCB07 2938354 YP_062570.1 CDS Lxx17000 NC_006087.1 1766618 1766989 R identified by sequence similarity; hypothetical protein complement(1766618..1766989) Leifsonia xyli subsp. xyli str. CTCB07 2939989 YP_062571.1 CDS Lxx17010 NC_006087.1 1767184 1767291 D hypothetical protein 1767184..1767291 Leifsonia xyli subsp. xyli str. CTCB07 2939080 YP_062572.1 CDS rbsK NC_006087.1 1769184 1770125 R identified by sequence similarity; ribokinase complement(1769184..1770125) Leifsonia xyli subsp. xyli str. CTCB07 2939713 YP_062573.1 CDS Lxx17060 NC_006087.1 1770160 1771200 R identified by sequence similarity; hypothetical protein complement(1770160..1771200) Leifsonia xyli subsp. xyli str. CTCB07 2940605 YP_062574.1 CDS Lxx17070 NC_006087.1 1771401 1771682 R identified by sequence similarity; hypothetical protein complement(1771401..1771682) Leifsonia xyli subsp. xyli str. CTCB07 2938270 YP_062575.1 CDS Lxx17080 NC_006087.1 1771997 1772386 R identified by sequence similarity; hypothetical protein complement(1771997..1772386) Leifsonia xyli subsp. xyli str. CTCB07 2939593 YP_062576.1 CDS Lxx17090 NC_006087.1 1772586 1773881 R identified by sequence similarity; sugar ABC transporter sugar-binding protein complement(1772586..1773881) Leifsonia xyli subsp. xyli str. CTCB07 2938917 YP_062577.1 CDS Lxx17100 NC_006087.1 1773916 1774818 R identified by sequence similarity; ABC transporter permease complement(1773916..1774818) Leifsonia xyli subsp. xyli str. CTCB07 2938573 YP_062578.1 CDS Lxx17130 NC_006087.1 1775759 1776793 R identified by sequence similarity; LacI family transcription regulator complement(1775759..1776793) Leifsonia xyli subsp. xyli str. CTCB07 2938827 YP_062579.1 CDS Lxx17140 NC_006087.1 1776992 1777573 D identified by sequence similarity; hypothetical protein 1776992..1777573 Leifsonia xyli subsp. xyli str. CTCB07 2940565 YP_062580.1 CDS Lxx17150 NC_006087.1 1777729 1779150 R identified by sequence similarity; NADH dehydrogenase, type 2 complement(1777729..1779150) Leifsonia xyli subsp. xyli str. CTCB07 2938810 YP_062581.1 CDS Lxx17160 NC_006087.1 1779190 1780482 R identified by sequence similarity; serine protease complement(1779190..1780482) Leifsonia xyli subsp. xyli str. CTCB07 2939237 YP_062582.1 CDS Lxx17170 NC_006087.1 1780461 1780973 R identified by sequence similarity; hypothetical protein complement(1780461..1780973) Leifsonia xyli subsp. xyli str. CTCB07 2938426 YP_062583.1 CDS Lxx17180 NC_006087.1 1780970 1781503 R identified by sequence similarity; hypothetical protein complement(1780970..1781503) Leifsonia xyli subsp. xyli str. CTCB07 2939483 YP_062585.1 CDS eno NC_006087.1 1781818 1783098 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1781818..1783098) Leifsonia xyli subsp. xyli str. CTCB07 2939944 YP_062586.1 CDS Lxx17210 NC_006087.1 1783163 1783846 D identified by sequence similarity; transposase 1783163..1783846 Leifsonia xyli subsp. xyli str. CTCB07 2940073 YP_062587.1 CDS hisS NC_006087.1 1783906 1785201 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1783906..1785201) Leifsonia xyli subsp. xyli str. CTCB07 2938331 YP_062588.1 CDS Lxx17230 NC_006087.1 1785292 1786095 R identified by sequence similarity; iron-vibriobactin/enterobactin uptake porter complement(1785292..1786095) Leifsonia xyli subsp. xyli str. CTCB07 2940028 YP_062589.1 CDS fepD NC_006087.1 1786100 1787944 R part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit complement(1786100..1787944) Leifsonia xyli subsp. xyli str. CTCB07 2939711 YP_062590.1 CDS Lxx17250 NC_006087.1 1788105 1789163 R identified by sequence similarity; iron ABC transporter substrate-binding protein complement(1788105..1789163) Leifsonia xyli subsp. xyli str. CTCB07 2939476 YP_062591.1 CDS Lxx17260 NC_006087.1 1789232 1789879 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(1789232..1789879) Leifsonia xyli subsp. xyli str. CTCB07 2940001 YP_062592.1 CDS mfd NC_006087.1 1791299 1794913 R identified by sequence similarity; transcription-repair coupling factor complement(1791299..1794913) Leifsonia xyli subsp. xyli str. CTCB07 2938290 YP_062593.1 CDS pth NC_006087.1 1796125 1796706 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1796125..1796706) Leifsonia xyli subsp. xyli str. CTCB07 2940466 YP_062594.1 CDS rplY NC_006087.1 1796715 1797317 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(1796715..1797317) Leifsonia xyli subsp. xyli str. CTCB07 2939111 YP_062595.1 CDS Lxx17310 NC_006087.1 1797440 1798345 R identified by sequence similarity; starvation-sensing protein A complement(1797440..1798345) Leifsonia xyli subsp. xyli str. CTCB07 2939229 YP_062596.1 CDS Lxx17340 NC_006087.1 1799633 1800442 R identified by sequence similarity; hypothetical protein complement(1799633..1800442) Leifsonia xyli subsp. xyli str. CTCB07 2939451 YP_062597.1 CDS bplA NC_006087.1 1800493 1801590 R identified by sequence similarity; lipopolysaccharide biosynthesis protein complement(1800493..1801590) Leifsonia xyli subsp. xyli str. CTCB07 2939518 YP_062598.1 CDS uxaC NC_006087.1 1801672 1803216 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 1801672..1803216 Leifsonia xyli subsp. xyli str. CTCB07 2940323 YP_062599.1 CDS Lxx17370 NC_006087.1 1803958 1804359 D hypothetical protein 1803958..1804359 Leifsonia xyli subsp. xyli str. CTCB07 2939856 YP_062600.1 CDS gnd NC_006087.1 1804438 1805898 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1804438..1805898 Leifsonia xyli subsp. xyli str. CTCB07 2938636 YP_062601.1 CDS Lxx17390 NC_006087.1 1806004 1806351 D hypothetical protein 1806004..1806351 Leifsonia xyli subsp. xyli str. CTCB07 2939795 YP_062602.1 CDS Lxx17400 NC_006087.1 1806370 1807002 R identified by sequence similarity; acetyltransferase complement(1806370..1807002) Leifsonia xyli subsp. xyli str. CTCB07 2940038 YP_062603.1 CDS malE NC_006087.1 1807008 1808270 R identified by sequence similarity; sugar ABC transporter sugar-binding protein complement(1807008..1808270) Leifsonia xyli subsp. xyli str. CTCB07 2939140 YP_062604.1 CDS psrA NC_006087.1 1808413 1809390 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(1808413..1809390) Leifsonia xyli subsp. xyli str. CTCB07 2939624 YP_062605.1 CDS glmU NC_006087.1 1809391 1810866 R identified by sequence similarity; UDP-N-acetylglucosamine pyrophosphorylase complement(1809391..1810866) Leifsonia xyli subsp. xyli str. CTCB07 2940593 YP_062606.1 CDS marR NC_006087.1 1811031 1811549 D identified by sequence similarity; MarR family transcriptional regulator 1811031..1811549 Leifsonia xyli subsp. xyli str. CTCB07 2940009 YP_062607.1 CDS tagF NC_006087.1 1811632 1814133 D identified by sequence similarity; teichoic acid synthase 1811632..1814133 Leifsonia xyli subsp. xyli str. CTCB07 2939555 YP_062608.1 CDS Lxx17470 NC_006087.1 1814231 1816051 D identified by sequence similarity; oleandomycin resistance ATPase 1814231..1816051 Leifsonia xyli subsp. xyli str. CTCB07 2940056 YP_062609.1 CDS ispE NC_006087.1 1816343 1817263 R catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1816343..1817263) Leifsonia xyli subsp. xyli str. CTCB07 2940425 YP_062610.1 CDS ksgA NC_006087.1 1817349 1818191 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1817349..1818191) Leifsonia xyli subsp. xyli str. CTCB07 2939587 YP_062611.1 CDS Lxx17510 NC_006087.1 1818188 1819129 R identified by sequence similarity; sec-independent protein TadD complement(1818188..1819129) Leifsonia xyli subsp. xyli str. CTCB07 2940107 YP_062612.1 CDS metG NC_006087.1 1819126 1820715 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1819126..1820715) Leifsonia xyli subsp. xyli str. CTCB07 2938909 YP_062613.1 CDS Lxx17530 NC_006087.1 1820920 1821846 R hypothetical protein complement(1820920..1821846) Leifsonia xyli subsp. xyli str. CTCB07 2939734 YP_062614.1 CDS Lxx17580 NC_006087.1 1825457 1826275 R identified by sequence similarity; tetrapyrrole methylase complement(1825457..1826275) Leifsonia xyli subsp. xyli str. CTCB07 2940356 YP_062615.1 CDS Lxx17570 NC_006087.1 1826302 1827936 D identified by sequence similarity; hypothetical protein 1826302..1827936 Leifsonia xyli subsp. xyli str. CTCB07 2938300 YP_062616.1 CDS Lxx17590 NC_006087.1 1828121 1829089 R identified by sequence similarity; sugar ABC transporter sugar-binding protein complement(1828121..1829089) Leifsonia xyli subsp. xyli str. CTCB07 2939516 YP_062617.1 CDS murQ NC_006087.1 1829318 1830040 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase complement(1829318..1830040) Leifsonia xyli subsp. xyli str. CTCB07 2938455 YP_062618.1 CDS gpoA NC_006087.1 1831110 1831598 D identified by sequence similarity; glutathione peroxidase 1831110..1831598 Leifsonia xyli subsp. xyli str. CTCB07 2939425 YP_062619.1 CDS pabC NC_006087.1 1832039 1832929 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1832039..1832929 Leifsonia xyli subsp. xyli str. CTCB07 2939216 YP_062620.1 CDS Lxx17650 NC_006087.1 1833063 1833398 D hypothetical protein 1833063..1833398 Leifsonia xyli subsp. xyli str. CTCB07 2939926 YP_062621.1 CDS soxA NC_006087.1 1834396 1835688 R identified by sequence similarity; dibenzothiophene desulfurization enzyme A complement(1834396..1835688) Leifsonia xyli subsp. xyli str. CTCB07 2938306 YP_062622.1 CDS cysM2 NC_006087.1 1835765 1836748 R identified by sequence similarity; cystathionine beta-synthase complement(1835765..1836748) Leifsonia xyli subsp. xyli str. CTCB07 2939822 YP_062623.1 CDS Lxx17710 NC_006087.1 1836814 1837761 R hypothetical protein complement(1836814..1837761) Leifsonia xyli subsp. xyli str. CTCB07 2940004 YP_062624.1 CDS Lxx17730 NC_006087.1 1838400 1838750 R hypothetical protein complement(1838400..1838750) Leifsonia xyli subsp. xyli str. CTCB07 2939074 YP_062625.1 CDS Lxx17740 NC_006087.1 1838868 1839368 R hypothetical protein complement(1838868..1839368) Leifsonia xyli subsp. xyli str. CTCB07 2940159 YP_062626.1 CDS Lxx17750 NC_006087.1 1839450 1840253 R hypothetical protein complement(1839450..1840253) Leifsonia xyli subsp. xyli str. CTCB07 2938581 YP_062627.1 CDS nrdF NC_006087.1 1841226 1842215 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(1841226..1842215) Leifsonia xyli subsp. xyli str. CTCB07 2940618 YP_062628.1 CDS nrdA NC_006087.1 1842340 1845030 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1842340..1845030) Leifsonia xyli subsp. xyli str. CTCB07 2939069 YP_062629.1 CDS Lxx17780 NC_006087.1 1845103 1846314 D identified by sequence similarity; ABC transporter permease 1845103..1846314 Leifsonia xyli subsp. xyli str. CTCB07 2939533 YP_062630.1 CDS Lxx17800 NC_006087.1 1846910 1847821 D identified by sequence similarity; hypothetical protein 1846910..1847821 Leifsonia xyli subsp. xyli str. CTCB07 2939724 YP_062631.1 CDS Lxx17810 NC_006087.1 1848229 1849452 D identified by sequence similarity; acyl-CoA dehydrogenase 1848229..1849452 Leifsonia xyli subsp. xyli str. CTCB07 2939105 YP_062632.1 CDS pepQ NC_006087.1 1849458 1850576 D identified by sequence similarity; dipeptidase 1849458..1850576 Leifsonia xyli subsp. xyli str. CTCB07 2939582 YP_062633.1 CDS Lxx17840 NC_006087.1 1850868 1851302 R identified by sequence similarity; hypothetical protein complement(1850868..1851302) Leifsonia xyli subsp. xyli str. CTCB07 2938903 YP_062634.1 CDS Lxx17860 NC_006087.1 1851622 1852119 R identified by sequence similarity; hypothetical protein complement(1851622..1852119) Leifsonia xyli subsp. xyli str. CTCB07 2938708 YP_062635.1 CDS Lxx17870 NC_006087.1 1852497 1853060 R identified by sequence similarity; hypothetical protein complement(1852497..1853060) Leifsonia xyli subsp. xyli str. CTCB07 2939733 YP_062636.1 CDS Lxx17880 NC_006087.1 1853631 1854332 R identified by sequence similarity; DtxR family iron dependent repressor complement(1853631..1854332) Leifsonia xyli subsp. xyli str. CTCB07 2939881 YP_062637.1 CDS serC NC_006087.1 1854439 1855554 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 1854439..1855554 Leifsonia xyli subsp. xyli str. CTCB07 2940084 YP_062638.1 CDS Lxx17900 NC_006087.1 1855702 1855800 D identified by sequence similarity; hypothetical protein 1855702..1855800 Leifsonia xyli subsp. xyli str. CTCB07 2939450 YP_062639.1 CDS Lxx17910 NC_006087.1 1855822 1856433 R identified by sequence similarity; hypothetical protein complement(1855822..1856433) Leifsonia xyli subsp. xyli str. CTCB07 2939504 YP_062640.1 CDS cspB NC_006087.1 1856417 1856797 R identified by sequence similarity; cold shock protein complement(1856417..1856797) Leifsonia xyli subsp. xyli str. CTCB07 2938391 YP_062641.1 CDS Lxx17930 NC_006087.1 1856854 1857144 D hypothetical protein 1856854..1857144 Leifsonia xyli subsp. xyli str. CTCB07 2939890 YP_062642.1 CDS Lxx17940 NC_006087.1 1857167 1859011 D identified by sequence similarity; hypothetical protein 1857167..1859011 Leifsonia xyli subsp. xyli str. CTCB07 2940539 YP_062643.1 CDS xpbC NC_006087.1 1859018 1860658 D identified by sequence similarity; DNA repair helicase 1859018..1860658 Leifsonia xyli subsp. xyli str. CTCB07 2940587 YP_062644.1 CDS ribG NC_006087.1 1860665 1861411 R identified by sequence similarity; hypothetical protein complement(1860665..1861411) Leifsonia xyli subsp. xyli str. CTCB07 2939955 YP_062645.1 CDS folP NC_006087.1 1861428 1862324 R identified by sequence similarity; dihydropteroate synthase complement(1861428..1862324) Leifsonia xyli subsp. xyli str. CTCB07 2939673 YP_062646.1 CDS phoP NC_006087.1 1862665 1863366 D identified by sequence similarity; two-component system regulatory protein 1862665..1863366 Leifsonia xyli subsp. xyli str. CTCB07 2938569 YP_062647.1 CDS phoR NC_006087.1 1863406 1865121 D identified by sequence similarity; two-component system sensor protein 1863406..1865121 Leifsonia xyli subsp. xyli str. CTCB07 2938417 YP_062648.1 CDS Lxx18000 NC_006087.1 1865876 1866109 D identified by sequence similarity; hypothetical protein 1865876..1866109 Leifsonia xyli subsp. xyli str. CTCB07 2939878 YP_062649.1 CDS groEL NC_006087.1 1866921 1868540 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(1866921..1868540) Leifsonia xyli subsp. xyli str. CTCB07 2938571 YP_062650.1 CDS csp NC_006087.1 1868814 1869032 R identified by sequence similarity; cold-shock protein complement(1868814..1869032) Leifsonia xyli subsp. xyli str. CTCB07 2939276 YP_062651.1 CDS Lxx18030 NC_006087.1 1869204 1869491 R identified by sequence similarity; hypothetical protein complement(1869204..1869491) Leifsonia xyli subsp. xyli str. CTCB07 2940183 YP_062652.1 CDS Lxx18040 NC_006087.1 1869775 1870074 R identified by sequence similarity; hypothetical protein complement(1869775..1870074) Leifsonia xyli subsp. xyli str. CTCB07 2940042 YP_062653.1 CDS Lxx18050 NC_006087.1 1870248 1870667 D identified by sequence similarity; oxidoreductase 1870248..1870667 Leifsonia xyli subsp. xyli str. CTCB07 2940294 YP_062654.1 CDS Lxx18060 NC_006087.1 1870664 1871215 D identified by sequence similarity; nitroreductase 1870664..1871215 Leifsonia xyli subsp. xyli str. CTCB07 2938982 YP_062655.1 CDS Lxx18080 NC_006087.1 1871212 1872747 R identified by sequence similarity; hypothetical protein complement(1871212..1872747) Leifsonia xyli subsp. xyli str. CTCB07 2938923 YP_062656.1 CDS lepB NC_006087.1 1872764 1873516 D identified by sequence similarity; signal peptidase I 1872764..1873516 Leifsonia xyli subsp. xyli str. CTCB07 2938385 YP_062657.1 CDS Lxx18100 NC_006087.1 1873633 1874418 R identified by sequence similarity; siderophore-interacting protein complement(1873633..1874418) Leifsonia xyli subsp. xyli str. CTCB07 2938288 YP_062658.1 CDS Lxx18110 NC_006087.1 1874646 1874882 D identified by sequence similarity; hypothetical protein 1874646..1874882 Leifsonia xyli subsp. xyli str. CTCB07 2939659 YP_062659.1 CDS Lxx18120 NC_006087.1 1874959 1875618 R identified by sequence similarity; two-component system regulatory protein complement(1874959..1875618) Leifsonia xyli subsp. xyli str. CTCB07 2939594 YP_062660.1 CDS Lxx18130 NC_006087.1 1875615 1877183 R identified by sequence similarity; two-component system sensor protein complement(1875615..1877183) Leifsonia xyli subsp. xyli str. CTCB07 2938356 YP_062661.1 CDS citM NC_006087.1 1877365 1878870 D identified by sequence similarity; Mg++/citrate complex transporter 1877365..1878870 Leifsonia xyli subsp. xyli str. CTCB07 2939748 YP_062662.1 CDS Lxx18150 NC_006087.1 1878880 1879236 D identified by sequence similarity; hypothetical protein 1878880..1879236 Leifsonia xyli subsp. xyli str. CTCB07 2939889 YP_062663.1 CDS Lxx18180 NC_006087.1 1879391 1880281 R identified by sequence similarity; hypothetical protein complement(1879391..1880281) Leifsonia xyli subsp. xyli str. CTCB07 2938762 YP_062664.1 CDS palK NC_006087.1 1880558 1881652 D identified by sequence similarity; glycerol-phosphate porter 1880558..1881652 Leifsonia xyli subsp. xyli str. CTCB07 2940173 YP_062665.1 CDS Lxx18190 NC_006087.1 1881706 1883034 D identified by sequence similarity; hypothetical protein 1881706..1883034 Leifsonia xyli subsp. xyli str. CTCB07 2939721 YP_062666.1 CDS Lxx18200 NC_006087.1 1883047 1883622 R identified by sequence similarity; secreted protein complement(1883047..1883622) Leifsonia xyli subsp. xyli str. CTCB07 2939832 YP_062667.1 CDS Lxx18210 NC_006087.1 1883911 1884843 D identified by sequence similarity; two-component system sensor protein 1883911..1884843 Leifsonia xyli subsp. xyli str. CTCB07 2938529 YP_062668.1 CDS Lxx18220 NC_006087.1 1884840 1885463 D identified by sequence similarity; two-component system regulatory protein 1884840..1885463 Leifsonia xyli subsp. xyli str. CTCB07 2939660 YP_062669.1 CDS Lxx18230 NC_006087.1 1885503 1886513 R identified by sequence similarity; tRNA/rRNA methyltransferase protein complement(1885503..1886513) Leifsonia xyli subsp. xyli str. CTCB07 2940049 YP_062670.1 CDS cysS NC_006087.1 1886510 1887943 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(1886510..1887943) Leifsonia xyli subsp. xyli str. CTCB07 2938689 YP_062671.1 CDS ispF NC_006087.1 1887954 1889114 R identified by sequence similarity; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(1887954..1889114) Leifsonia xyli subsp. xyli str. CTCB07 2939630 YP_062672.1 CDS Lxx18260 NC_006087.1 1889205 1889687 R identified by sequence similarity; transcriptional regulator, CarD-like regulator complement(1889205..1889687) Leifsonia xyli subsp. xyli str. CTCB07 2938951 YP_062673.1 CDS Lxx18270 NC_006087.1 1889864 1890364 D hypothetical protein 1889864..1890364 Leifsonia xyli subsp. xyli str. CTCB07 2940233 YP_062674.1 CDS regX3 NC_006087.1 1890394 1891077 R identified by sequence similarity; two-component system regulatory protein complement(1890394..1891077) Leifsonia xyli subsp. xyli str. CTCB07 2939718 YP_062675.1 CDS Lxx18290 NC_006087.1 1891074 1892225 R identified by sequence similarity; two-component system sensor protein complement(1891074..1892225) Leifsonia xyli subsp. xyli str. CTCB07 2938386 YP_062676.1 CDS phoU NC_006087.1 1892351 1893079 D identified by sequence similarity; phosphate transport system regulator 1892351..1893079 Leifsonia xyli subsp. xyli str. CTCB07 2940415 YP_062677.1 CDS Lxx18310 NC_006087.1 1893190 1893981 R hypothetical protein complement(1893190..1893981) Leifsonia xyli subsp. xyli str. CTCB07 2938742 YP_062678.1 CDS gpmA NC_006087.1 1894359 1895108 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1894359..1895108) Leifsonia xyli subsp. xyli str. CTCB07 2938411 YP_062679.1 CDS Lxx18330 NC_006087.1 1895126 1895944 D identified by sequence similarity; hypothetical protein 1895126..1895944 Leifsonia xyli subsp. xyli str. CTCB07 2940522 YP_062680.1 CDS Lxx18340 NC_006087.1 1895975 1897087 R identified by sequence similarity; hypothetical protein complement(1895975..1897087) Leifsonia xyli subsp. xyli str. CTCB07 2938672 YP_062681.1 CDS Lxx18350 NC_006087.1 1897089 1897685 R identified by sequence similarity; hypothetical protein complement(1897089..1897685) Leifsonia xyli subsp. xyli str. CTCB07 2940143 YP_062682.1 CDS Lxx18360 NC_006087.1 1897705 1897815 R hypothetical protein complement(1897705..1897815) Leifsonia xyli subsp. xyli str. CTCB07 2939851 YP_062683.1 CDS glnR NC_006087.1 1898247 1898951 D identified by sequence similarity; GlnR family transcriptional regulator 1898247..1898951 Leifsonia xyli subsp. xyli str. CTCB07 2939534 YP_062684.1 CDS pstS NC_006087.1 1902283 1903377 D identified by sequence similarity; phosphate porter 1902283..1903377 Leifsonia xyli subsp. xyli str. CTCB07 2940199 YP_062685.1 CDS pstC NC_006087.1 1903474 1904421 D identified by sequence similarity; ABC transporter permease 1903474..1904421 Leifsonia xyli subsp. xyli str. CTCB07 2938478 YP_062686.1 CDS pstA NC_006087.1 1904421 1905509 D identified by sequence similarity; ABC transporter permease 1904421..1905509 Leifsonia xyli subsp. xyli str. CTCB07 2939877 YP_062687.1 CDS pstB NC_006087.1 1905551 1906330 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1905551..1906330 Leifsonia xyli subsp. xyli str. CTCB07 2939500 YP_062688.1 CDS Lxx18460 NC_006087.1 1906372 1907091 R identified by sequence similarity; hypothetical protein complement(1906372..1907091) Leifsonia xyli subsp. xyli str. CTCB07 2940592 YP_062689.1 CDS Lxx18470 NC_006087.1 1907088 1907666 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. bovis this protein has been shown to be involved in expression of antigenic proteins; RNA polymerase sigma factor SigK complement(1907088..1907666) Leifsonia xyli subsp. xyli str. CTCB07 2939857 YP_062690.1 CDS Lxx18480 NC_006087.1 1907827 1908456 R identified by sequence similarity; hypothetical protein complement(1907827..1908456) Leifsonia xyli subsp. xyli str. CTCB07 2940047 YP_062691.1 CDS Lxx18490 NC_006087.1 1908671 1909330 R identified by sequence similarity; secreted protein complement(1908671..1909330) Leifsonia xyli subsp. xyli str. CTCB07 2938802 YP_062692.1 CDS Lxx18520 NC_006087.1 1910573 1911781 R identified by sequence similarity; chloride channel protein complement(1910573..1911781) Leifsonia xyli subsp. xyli str. CTCB07 2939513 YP_062693.1 CDS Lxx18530 NC_006087.1 1911871 1912086 R identified by sequence similarity; hypothetical protein complement(1911871..1912086) Leifsonia xyli subsp. xyli str. CTCB07 2939286 YP_062694.1 CDS chaA NC_006087.1 1912531 1913661 D identified by sequence similarity; calcium/proton antiporter 1912531..1913661 Leifsonia xyli subsp. xyli str. CTCB07 2938248 YP_062695.1 CDS Lxx18550 NC_006087.1 1913745 1914590 R identified by sequence similarity; DeoR family transcriptional regulator complement(1913745..1914590) Leifsonia xyli subsp. xyli str. CTCB07 2940369 YP_062696.1 CDS Lxx18600 NC_006087.1 1917118 1917870 R identified by sequence similarity; hypothetical protein complement(1917118..1917870) Leifsonia xyli subsp. xyli str. CTCB07 2940287 YP_062697.1 CDS Lxx18610 NC_006087.1 1917907 1918422 D identified by sequence similarity; siderophore binding protein 1917907..1918422 Leifsonia xyli subsp. xyli str. CTCB07 2940571 YP_062698.1 CDS Lxx18620 NC_006087.1 1918419 1918856 R identified by sequence similarity; hypothetical protein complement(1918419..1918856) Leifsonia xyli subsp. xyli str. CTCB07 2938906 YP_062699.1 CDS folD NC_006087.1 1918901 1919782 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1918901..1919782) Leifsonia xyli subsp. xyli str. CTCB07 2938335 YP_062700.1 CDS glyA NC_006087.1 1919872 1921164 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1919872..1921164) Leifsonia xyli subsp. xyli str. CTCB07 2940474 YP_062701.1 CDS Lxx18650 NC_006087.1 1921433 1922923 D identified by sequence similarity; beta-N-acetylhexosaminidase 1921433..1922923 Leifsonia xyli subsp. xyli str. CTCB07 2939223 YP_062702.1 CDS cpsC NC_006087.1 1923632 1924384 D identified by sequence similarity; capsular polysaccharide biosynthesis protein 1923632..1924384 Leifsonia xyli subsp. xyli str. CTCB07 2940444 YP_062703.1 CDS Lxx18670 NC_006087.1 1925088 1925474 R hypothetical protein complement(1925088..1925474) Leifsonia xyli subsp. xyli str. CTCB07 2938690 YP_062704.1 CDS Lxx18680 NC_006087.1 1925481 1926386 R identified by sequence similarity; hypothetical protein complement(1925481..1926386) Leifsonia xyli subsp. xyli str. CTCB07 2939559 YP_062705.1 CDS Lxx18690 NC_006087.1 1926379 1926558 R hypothetical protein complement(1926379..1926558) Leifsonia xyli subsp. xyli str. CTCB07 2938752 YP_062706.1 CDS Lxx18700 NC_006087.1 1926727 1927680 R hypothetical protein complement(1926727..1927680) Leifsonia xyli subsp. xyli str. CTCB07 2939262 YP_062707.1 CDS Lxx18710 NC_006087.1 1928019 1928327 R hypothetical protein complement(1928019..1928327) Leifsonia xyli subsp. xyli str. CTCB07 2939597 YP_062708.1 CDS Lxx18720 NC_006087.1 1928580 1931099 D identified by sequence similarity; LuxR family transcriptional regulator 1928580..1931099 Leifsonia xyli subsp. xyli str. CTCB07 2938575 YP_062709.1 CDS Lxx18730 NC_006087.1 1931096 1932331 R identified by sequence similarity; hypothetical protein complement(1931096..1932331) Leifsonia xyli subsp. xyli str. CTCB07 2938382 YP_062710.1 CDS Lxx18740 NC_006087.1 1933207 1936326 D identified by sequence similarity; RHS-like protein 1933207..1936326 Leifsonia xyli subsp. xyli str. CTCB07 2940360 YP_062711.1 CDS Lxx18750 NC_006087.1 1936567 1937181 D identified by sequence similarity; glycin rich protein 1936567..1937181 Leifsonia xyli subsp. xyli str. CTCB07 2939422 YP_062712.1 CDS tnp NC_006087.1 1937178 1938389 R identified by sequence similarity; transposase, ISlxx5 complement(1937178..1938389) Leifsonia xyli subsp. xyli str. CTCB07 2940472 YP_062713.1 CDS copS NC_006087.1 1938607 1939680 R identified by sequence similarity; two-component system sensor protein complement(1938607..1939680) Leifsonia xyli subsp. xyli str. CTCB07 2939653 YP_062714.1 CDS cutR NC_006087.1 1939695 1940357 R identified by sequence similarity; two-component system regulatory protein complement(1939695..1940357) Leifsonia xyli subsp. xyli str. CTCB07 2938734 YP_062715.1 CDS Lxx18790 NC_006087.1 1940476 1941141 D hypothetical protein 1940476..1941141 Leifsonia xyli subsp. xyli str. CTCB07 2940029 YP_062716.1 CDS Lxx18800 NC_006087.1 1941250 1941528 D hypothetical protein 1941250..1941528 Leifsonia xyli subsp. xyli str. CTCB07 2939866 YP_062717.1 CDS Lxx18810 NC_006087.1 1941786 1942088 D identified by sequence similarity; hypothetical protein 1941786..1942088 Leifsonia xyli subsp. xyli str. CTCB07 2939908 YP_062718.1 CDS Lxx18820 NC_006087.1 1942683 1943204 D identified by sequence similarity; ABC transporter ATP-binding protein 1942683..1943204 Leifsonia xyli subsp. xyli str. CTCB07 2938423 YP_062719.1 CDS Lxx18830 NC_006087.1 1943201 1943902 D hypothetical protein 1943201..1943902 Leifsonia xyli subsp. xyli str. CTCB07 2940366 YP_062720.1 CDS rplT NC_006087.1 1944316 1944708 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1944316..1944708) Leifsonia xyli subsp. xyli str. CTCB07 2939704 YP_062721.1 CDS rpmI NC_006087.1 1944740 1944934 R identified by sequence similarity; 50S ribosomal protein L35 complement(1944740..1944934) Leifsonia xyli subsp. xyli str. CTCB07 2940092 YP_062722.1 CDS infC NC_006087.1 1944934 1945740 R identified by sequence similarity; translation initiation factor IF-3 complement(1944934..1945740) Leifsonia xyli subsp. xyli str. CTCB07 2938508 YP_062723.1 CDS Lxx18880 NC_006087.1 1947796 1948374 R identified by sequence similarity; phosphinothricin acetyltransferase protein complement(1947796..1948374) Leifsonia xyli subsp. xyli str. CTCB07 2939747 YP_062724.1 CDS ung NC_006087.1 1948410 1949102 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1948410..1949102) Leifsonia xyli subsp. xyli str. CTCB07 2939231 YP_062725.1 CDS gpt NC_006087.1 1949108 1949635 R identified by sequence similarity; xanthine-guanine phosphoribosyltransferase complement(1949108..1949635) Leifsonia xyli subsp. xyli str. CTCB07 2938746 YP_062726.1 CDS Lxx18910 NC_006087.1 1949807 1950799 R hypothetical protein complement(1949807..1950799) Leifsonia xyli subsp. xyli str. CTCB07 2939650 YP_062727.1 CDS Lxx18920 NC_006087.1 1950830 1951186 R hypothetical protein complement(1950830..1951186) Leifsonia xyli subsp. xyli str. CTCB07 2939627 YP_062728.1 CDS cysD NC_006087.1 1951252 1952574 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1951252..1952574) Leifsonia xyli subsp. xyli str. CTCB07 2939522 YP_062729.1 CDS Lxx18940 NC_006087.1 1952685 1953533 D identified by sequence similarity; oxidoreductase 1952685..1953533 Leifsonia xyli subsp. xyli str. CTCB07 2939465 YP_062730.1 CDS metX NC_006087.1 1953565 1954773 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 1953565..1954773 Leifsonia xyli subsp. xyli str. CTCB07 2938351 YP_062731.1 CDS Lxx18960 NC_006087.1 1954789 1955955 D identified by sequence similarity; two-component system sensor protein 1954789..1955955 Leifsonia xyli subsp. xyli str. CTCB07 2939671 YP_062732.1 CDS Lxx18970 NC_006087.1 1955952 1957157 D hypothetical protein 1955952..1957157 Leifsonia xyli subsp. xyli str. CTCB07 2940017 YP_062733.1 CDS Lxx18980 NC_006087.1 1957193 1957846 D identified by sequence similarity; two-component system regulatory protein 1957193..1957846 Leifsonia xyli subsp. xyli str. CTCB07 2939346 YP_062734.1 CDS Lxx19030 NC_006087.1 1964172 1965362 D identified by sequence similarity; serine/threonine kinase 1964172..1965362 Leifsonia xyli subsp. xyli str. CTCB07 2939712 YP_062735.1 CDS Lxx19050 NC_006087.1 1965359 1965592 D hypothetical protein 1965359..1965592 Leifsonia xyli subsp. xyli str. CTCB07 2939110 YP_062736.1 CDS Lxx19070 NC_006087.1 1966181 1966501 R identified by sequence similarity; hypothetical protein complement(1966181..1966501) Leifsonia xyli subsp. xyli str. CTCB07 2939426 YP_062737.1 CDS Lxx19080 NC_006087.1 1966549 1967901 R identified by sequence similarity; hypothetical protein complement(1966549..1967901) Leifsonia xyli subsp. xyli str. CTCB07 2938500 YP_062738.1 CDS Lxx19090 NC_006087.1 1967925 1968740 R identified by sequence similarity; hypothetical protein complement(1967925..1968740) Leifsonia xyli subsp. xyli str. CTCB07 2940046 YP_062739.1 CDS Lxx19100 NC_006087.1 1968807 1969424 D identified by sequence similarity; hypothetical protein 1968807..1969424 Leifsonia xyli subsp. xyli str. CTCB07 2938541 YP_062740.1 CDS ubiB NC_006087.1 1969433 1970518 D identified by sequence similarity; NADH-dependent flavin oxidoreductase 1969433..1970518 Leifsonia xyli subsp. xyli str. CTCB07 2939148 YP_062741.1 CDS Lxx19120 NC_006087.1 1970575 1971567 R identified by sequence similarity; hemolysin complement(1970575..1971567) Leifsonia xyli subsp. xyli str. CTCB07 2938582 YP_062742.1 CDS Lxx19130 NC_006087.1 1971605 1972924 R identified by sequence similarity; hemolysin complement(1971605..1972924) Leifsonia xyli subsp. xyli str. CTCB07 2939765 YP_062743.1 CDS guaB NC_006087.1 1973153 1974592 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase complement(1973153..1974592) Leifsonia xyli subsp. xyli str. CTCB07 2939968 YP_062744.1 CDS kgd NC_006087.1 1974725 1978651 D kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; alpha-ketoglutarate decarboxylase 1974725..1978651 Leifsonia xyli subsp. xyli str. CTCB07 2938916 YP_062745.1 CDS sigH NC_006087.1 1979210 1979941 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(1979210..1979941) Leifsonia xyli subsp. xyli str. CTCB07 2938551 YP_062746.1 CDS aroA NC_006087.1 1980042 1981352 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1980042..1981352 Leifsonia xyli subsp. xyli str. CTCB07 2940035 YP_062747.1 CDS Lxx19200 NC_006087.1 1981352 1982410 D identified by sequence similarity; hypothetical protein 1981352..1982410 Leifsonia xyli subsp. xyli str. CTCB07 2938788 YP_062748.1 CDS bcp NC_006087.1 1982435 1982908 D identified by sequence similarity; bacterioferritin comigratory-like protein 1982435..1982908 Leifsonia xyli subsp. xyli str. CTCB07 2938545 YP_062749.1 CDS dppF NC_006087.1 1982918 1983685 R identified by sequence similarity; oligopeptide transporter complement(1982918..1983685) Leifsonia xyli subsp. xyli str. CTCB07 2938562 YP_062750.1 CDS moaD NC_006087.1 1983682 1984770 R identified by sequence similarity; ABC transporter ATP-binding protein complement(1983682..1984770) Leifsonia xyli subsp. xyli str. CTCB07 2938549 YP_062751.1 CDS dppB NC_006087.1 1985348 1986310 R identified by sequence similarity; ABC transporter permease complement(1985348..1986310) Leifsonia xyli subsp. xyli str. CTCB07 2940095 YP_062752.1 CDS Lxx19270 NC_006087.1 1987943 1988329 R identified by sequence similarity; hypothetical protein complement(1987943..1988329) Leifsonia xyli subsp. xyli str. CTCB07 2939776 YP_062753.1 CDS Lxx19280 NC_006087.1 1988750 1989163 R hypothetical protein complement(1988750..1989163) Leifsonia xyli subsp. xyli str. CTCB07 2938487 YP_062754.1 CDS Lxx19290 NC_006087.1 1989390 1989638 D identified by sequence similarity; regulatory protein 1989390..1989638 Leifsonia xyli subsp. xyli str. CTCB07 2940016 YP_062755.1 CDS Lxx19320 NC_006087.1 1989694 1991187 R identified by sequence similarity; two-component system sensor protein complement(1989694..1991187) Leifsonia xyli subsp. xyli str. CTCB07 2938509 YP_062756.1 CDS Lxx19300 NC_006087.1 1991195 1991959 D identified by sequence similarity; hypothetical protein 1991195..1991959 Leifsonia xyli subsp. xyli str. CTCB07 2940478 YP_062757.1 CDS Lxx19310 NC_006087.1 1992037 1992909 D identified by sequence similarity; sugar kinase 1992037..1992909 Leifsonia xyli subsp. xyli str. CTCB07 2938369 YP_062758.1 CDS lacC NC_006087.1 1992906 1993784 D identified by sequence similarity; tagatose 6-phosphate kinase 1992906..1993784 Leifsonia xyli subsp. xyli str. CTCB07 2938511 YP_062759.1 CDS agaY NC_006087.1 1993800 1994681 D identified by sequence similarity; tagatose-bisphosphate aldolase 1993800..1994681 Leifsonia xyli subsp. xyli str. CTCB07 2939753 YP_062760.1 CDS Lxx19350 NC_006087.1 1994678 1995463 D identified by sequence similarity; DeoR family transcriptional regulator 1994678..1995463 Leifsonia xyli subsp. xyli str. CTCB07 2939654 YP_062761.1 CDS nagA NC_006087.1 1995502 1996671 D identified by sequence similarity; N-acetylglucosamine-6-phosphate deacetylase 1995502..1996671 Leifsonia xyli subsp. xyli str. CTCB07 2939087 YP_062762.1 CDS Lxx19370 NC_006087.1 1996912 1997172 D hypothetical protein 1996912..1997172 Leifsonia xyli subsp. xyli str. CTCB07 2939759 YP_062763.1 CDS Lxx19380 NC_006087.1 1997317 1998900 D identified by sequence similarity; hemagglutinin/hemolysin-like protein 1997317..1998900 Leifsonia xyli subsp. xyli str. CTCB07 2939343 YP_062764.1 CDS Lxx19390 NC_006087.1 1998887 2000104 R identified by sequence similarity; sugar transporter complement(1998887..2000104) Leifsonia xyli subsp. xyli str. CTCB07 2940279 YP_062765.1 CDS purU NC_006087.1 2000572 2001444 D identified by sequence similarity; formyletrahydrofolate deformylase 2000572..2001444 Leifsonia xyli subsp. xyli str. CTCB07 2939700 YP_062766.1 CDS Lxx19410 NC_006087.1 2001458 2001823 D identified by sequence similarity; hypothetical protein 2001458..2001823 Leifsonia xyli subsp. xyli str. CTCB07 2940391 YP_062767.1 CDS Lxx19420 NC_006087.1 2002305 2002430 R hypothetical protein complement(2002305..2002430) Leifsonia xyli subsp. xyli str. CTCB07 2939548 YP_062768.1 CDS Lxx19430 NC_006087.1 2003218 2003322 D hypothetical protein 2003218..2003322 Leifsonia xyli subsp. xyli str. CTCB07 2940514 YP_062769.1 CDS Lxx19440 NC_006087.1 2003866 2003946 R hypothetical protein complement(2003866..2003946) Leifsonia xyli subsp. xyli str. CTCB07 2940149 YP_062770.1 CDS Lxx19450 NC_006087.1 2004192 2004614 R hypothetical protein complement(2004192..2004614) Leifsonia xyli subsp. xyli str. CTCB07 2939549 YP_062771.1 CDS Lxx19460 NC_006087.1 2004762 2006507 R identified by sequence similarity; hypothetical protein complement(2004762..2006507) Leifsonia xyli subsp. xyli str. CTCB07 2939084 YP_062772.1 CDS Lxx19470 NC_006087.1 2006553 2006678 R hypothetical protein complement(2006553..2006678) Leifsonia xyli subsp. xyli str. CTCB07 2940599 YP_062773.1 CDS nagB NC_006087.1 2006946 2007578 R identified by sequence similarity; N-acetylglucosamine-6-phosphate isomerase complement(2006946..2007578) Leifsonia xyli subsp. xyli str. CTCB07 2939127 YP_062774.1 CDS icd NC_006087.1 2008100 2009314 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(2008100..2009314) Leifsonia xyli subsp. xyli str. CTCB07 2939455 YP_062775.1 CDS speG NC_006087.1 2009461 2009913 D identified by sequence similarity; spermidine acetyltransferase 2009461..2009913 Leifsonia xyli subsp. xyli str. CTCB07 2940380 YP_062776.1 CDS Lxx19510 NC_006087.1 2009897 2010235 D identified by sequence similarity; DNA-binding protein 2009897..2010235 Leifsonia xyli subsp. xyli str. CTCB07 2938697 YP_062777.1 CDS Lxx19520 NC_006087.1 2010290 2010760 D hypothetical protein 2010290..2010760 Leifsonia xyli subsp. xyli str. CTCB07 2940080 YP_062778.1 CDS Lxx19540 NC_006087.1 2011842 2012453 R hypothetical protein complement(2011842..2012453) Leifsonia xyli subsp. xyli str. CTCB07 2939876 YP_062779.1 CDS Lxx19550 NC_006087.1 2012529 2013200 R identified by sequence similarity; two-component system regulatory protein complement(2012529..2013200) Leifsonia xyli subsp. xyli str. CTCB07 2939225 YP_062780.1 CDS narP NC_006087.1 2013214 2013546 R identified by sequence similarity; nitrate/nitrite response regulator protein complement(2013214..2013546) Leifsonia xyli subsp. xyli str. CTCB07 2938578 YP_062781.1 CDS Lxx19570 NC_006087.1 2013818 2014123 R identified by sequence similarity; hypothetical protein complement(2013818..2014123) Leifsonia xyli subsp. xyli str. CTCB07 2938370 YP_062782.1 CDS tetR NC_006087.1 2014174 2014743 R identified by sequence similarity; TetR family transcriptional regulator complement(2014174..2014743) Leifsonia xyli subsp. xyli str. CTCB07 2939381 YP_062783.1 CDS Lxx19582 NC_006087.1 2015803 2016132 R identified by sequence similarity; hypothetical protein complement(2015803..2016132) Leifsonia xyli subsp. xyli str. CTCB07 2939384 YP_062784.1 CDS Lxx19584 NC_006087.1 2016133 2016606 R identified by sequence similarity; hypothetical protein complement(2016133..2016606) Leifsonia xyli subsp. xyli str. CTCB07 2939561 YP_062785.1 CDS pimB NC_006087.1 2018562 2020367 R identified by sequence similarity; ABC transporter ATP-binding protein complement(2018562..2020367) Leifsonia xyli subsp. xyli str. CTCB07 2940512 YP_062786.1 CDS ddaH NC_006087.1 2022535 2023323 R identified by sequence similarity; dimethylarginine dimethylaminohydrolase complement(2022535..2023323) Leifsonia xyli subsp. xyli str. CTCB07 2938488 YP_062787.1 CDS purH NC_006087.1 2023906 2025486 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(2023906..2025486) Leifsonia xyli subsp. xyli str. CTCB07 2939833 YP_062788.1 CDS purN NC_006087.1 2025483 2026076 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(2025483..2026076) Leifsonia xyli subsp. xyli str. CTCB07 2938374 YP_062789.1 CDS Lxx19660 NC_006087.1 2026118 2027437 R identified by sequence similarity; hypothetical protein complement(2026118..2027437) Leifsonia xyli subsp. xyli str. CTCB07 2938538 YP_062790.1 CDS Lxx19690 NC_006087.1 2028841 2030040 R identified by sequence similarity; hypothetical protein complement(2028841..2030040) Leifsonia xyli subsp. xyli str. CTCB07 2940187 YP_062791.1 CDS sucD NC_006087.1 2030147 2031034 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(2030147..2031034) Leifsonia xyli subsp. xyli str. CTCB07 2939605 YP_062792.1 CDS sucC NC_006087.1 2031061 2032224 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(2031061..2032224) Leifsonia xyli subsp. xyli str. CTCB07 2938543 YP_062793.1 CDS Lxx19730 NC_006087.1 2034005 2034595 D identified by sequence similarity; hypothetical protein 2034005..2034595 Leifsonia xyli subsp. xyli str. CTCB07 2939488 YP_062794.1 CDS uvrD NC_006087.1 2035110 2037611 R identified by sequence similarity; ATP-dependent DNA helicase II complement(2035110..2037611) Leifsonia xyli subsp. xyli str. CTCB07 2938536 YP_062795.1 CDS glpQ NC_006087.1 2037788 2038837 R identified by sequence similarity; glycerophosphoryl diester phosphodiesterase complement(2037788..2038837) Leifsonia xyli subsp. xyli str. CTCB07 2938560 YP_062796.1 CDS Lxx19760 NC_006087.1 2038901 2039419 D hypothetical protein 2038901..2039419 Leifsonia xyli subsp. xyli str. CTCB07 2940082 YP_062797.1 CDS Lxx19770 NC_006087.1 2039478 2040284 D identified by sequence similarity; hypothetical protein 2039478..2040284 Leifsonia xyli subsp. xyli str. CTCB07 2938548 YP_062798.1 CDS guaA NC_006087.1 2040368 2041879 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2040368..2041879) Leifsonia xyli subsp. xyli str. CTCB07 2939901 YP_062799.1 CDS Lxx19790 NC_006087.1 2041992 2042435 R identified by sequence similarity; hypothetical protein complement(2041992..2042435) Leifsonia xyli subsp. xyli str. CTCB07 2939481 YP_062800.1 CDS Lxx19800 NC_006087.1 2042440 2043240 R identified by sequence similarity; hypothetical protein complement(2042440..2043240) Leifsonia xyli subsp. xyli str. CTCB07 2939439 YP_062801.1 CDS yhaU NC_006087.1 2043331 2044722 R identified by sequence similarity; Na+/H+ antiporter complement(2043331..2044722) Leifsonia xyli subsp. xyli str. CTCB07 2939792 YP_062802.1 CDS Lxx19820 NC_006087.1 2044726 2045307 R identified by sequence similarity; hypothetical protein complement(2044726..2045307) Leifsonia xyli subsp. xyli str. CTCB07 2939521 YP_062803.1 CDS glpD NC_006087.1 2045455 2047296 R identified by sequence similarity; glycerol-3-phosphate dehydrogenase complement(2045455..2047296) Leifsonia xyli subsp. xyli str. CTCB07 2939742 YP_062804.1 CDS guaB NC_006087.1 2047332 2048450 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase complement(2047332..2048450) Leifsonia xyli subsp. xyli str. CTCB07 2938914 YP_062805.1 CDS Lxx19850 NC_006087.1 2048453 2049184 R identified by sequence similarity; hypothetical protein complement(2048453..2049184) Leifsonia xyli subsp. xyli str. CTCB07 2939107 YP_062806.1 CDS guaB NC_006087.1 2049340 2050842 R identified by sequence similarity; inosine-5'-monophosphate dehydrogenase complement(2049340..2050842) Leifsonia xyli subsp. xyli str. CTCB07 2939318 YP_062807.1 CDS Lxx19870 NC_006087.1 2051012 2051335 D hypothetical protein 2051012..2051335 Leifsonia xyli subsp. xyli str. CTCB07 2939974 YP_062808.1 CDS groES NC_006087.1 2051609 2051905 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2051609..2051905) Leifsonia xyli subsp. xyli str. CTCB07 2939403 YP_062809.1 CDS Lxx19890 NC_006087.1 2052005 2053216 D identified by sequence similarity; hypothetical protein 2052005..2053216 Leifsonia xyli subsp. xyli str. CTCB07 2940119 YP_062810.1 CDS Lxx19900 NC_006087.1 2053235 2053651 R identified by sequence similarity; hypothetical protein complement(2053235..2053651) Leifsonia xyli subsp. xyli str. CTCB07 2940401 YP_062811.1 CDS gcp NC_006087.1 2053823 2054905 R identified by sequence similarity; O-sialoglycoprotein endopeptidase complement(2053823..2054905) Leifsonia xyli subsp. xyli str. CTCB07 2938577 YP_062812.1 CDS Lxx19920 NC_006087.1 2054902 2055348 R identified by sequence similarity; hypothetical protein complement(2054902..2055348) Leifsonia xyli subsp. xyli str. CTCB07 2938826 YP_062813.1 CDS Lxx19930 NC_006087.1 2055381 2056001 R identified by sequence similarity; hypothetical protein complement(2055381..2056001) Leifsonia xyli subsp. xyli str. CTCB07 2938544 YP_062814.1 CDS Lxx19940 NC_006087.1 2056011 2056502 R identified by sequence similarity; hypothetical protein complement(2056011..2056502) Leifsonia xyli subsp. xyli str. CTCB07 2938737 YP_062815.1 CDS alr NC_006087.1 2056511 2057629 R identified by sequence similarity; alanine racemase complement(2056511..2057629) Leifsonia xyli subsp. xyli str. CTCB07 2940269 YP_062816.1 CDS acpS NC_006087.1 2057626 2057982 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2057626..2057982) Leifsonia xyli subsp. xyli str. CTCB07 2938530 YP_062817.1 CDS glmS NC_006087.1 2057988 2059838 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(2057988..2059838) Leifsonia xyli subsp. xyli str. CTCB07 2939821 YP_062818.1 CDS coaA NC_006087.1 2059882 2060850 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 2059882..2060850 Leifsonia xyli subsp. xyli str. CTCB07 2939466 YP_062819.1 CDS Lxx19990 NC_006087.1 2060928 2061278 D identified by sequence similarity; hypothetical protein 2060928..2061278 Leifsonia xyli subsp. xyli str. CTCB07 2938925 YP_062820.1 CDS Lxx20000 NC_006087.1 2061331 2061657 D identified by sequence similarity; hypothetical protein 2061331..2061657 Leifsonia xyli subsp. xyli str. CTCB07 2939379 YP_062821.1 CDS glmM NC_006087.1 2062020 2063381 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2062020..2063381) Leifsonia xyli subsp. xyli str. CTCB07 2938565 YP_062822.1 CDS rpsI NC_006087.1 2063409 2063915 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2063409..2063915) Leifsonia xyli subsp. xyli str. CTCB07 2940067 YP_062823.1 CDS rplM NC_006087.1 2063966 2064412 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2063966..2064412) Leifsonia xyli subsp. xyli str. CTCB07 2939487 YP_062824.1 CDS truA NC_006087.1 2064794 2065660 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2064794..2065660) Leifsonia xyli subsp. xyli str. CTCB07 2939298 YP_062825.1 CDS yrhL NC_006087.1 2065746 2067689 D identified by sequence similarity; lipopolysaccharide modification acyltransferase 2065746..2067689 Leifsonia xyli subsp. xyli str. CTCB07 2939083 YP_062826.1 CDS Lxx20060 NC_006087.1 2067703 2067897 R hypothetical protein complement(2067703..2067897) Leifsonia xyli subsp. xyli str. CTCB07 2939579 YP_062827.1 CDS rplQ NC_006087.1 2068168 2068647 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2068168..2068647) Leifsonia xyli subsp. xyli str. CTCB07 2940135 YP_062828.1 CDS rpoA NC_006087.1 2068700 2069779 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2068700..2069779) Leifsonia xyli subsp. xyli str. CTCB07 2939567 YP_062829.1 CDS rpsK NC_006087.1 2069811 2070209 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2069811..2070209) Leifsonia xyli subsp. xyli str. CTCB07 2938981 YP_062830.1 CDS rpsM NC_006087.1 2070239 2070613 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2070239..2070613) Leifsonia xyli subsp. xyli str. CTCB07 2939410 YP_062831.1 CDS rpmJ NC_006087.1 2070763 2070876 R identified by sequence similarity; 50S ribosomal protein L36 complement(2070763..2070876) Leifsonia xyli subsp. xyli str. CTCB07 2940106 YP_062832.1 CDS infA NC_006087.1 2070957 2071178 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2070957..2071178) Leifsonia xyli subsp. xyli str. CTCB07 2938701 YP_062833.1 CDS map NC_006087.1 2071317 2072147 R identified by sequence similarity; methionine aminopeptidase complement(2071317..2072147) Leifsonia xyli subsp. xyli str. CTCB07 2938463 YP_062834.1 CDS adk NC_006087.1 2072155 2072754 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2072155..2072754) Leifsonia xyli subsp. xyli str. CTCB07 2939395 YP_062835.1 CDS secY NC_006087.1 2072760 2074082 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2072760..2074082) Leifsonia xyli subsp. xyli str. CTCB07 2939414 YP_062836.1 CDS rplO NC_006087.1 2074163 2074795 R late assembly protein; 50S ribosomal protein L15 complement(2074163..2074795) Leifsonia xyli subsp. xyli str. CTCB07 2938303 YP_062837.1 CDS rpmD NC_006087.1 2074795 2074977 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2074795..2074977) Leifsonia xyli subsp. xyli str. CTCB07 2940277 YP_062838.1 CDS rpsE NC_006087.1 2074977 2075675 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2074977..2075675) Leifsonia xyli subsp. xyli str. CTCB07 2940394 YP_062839.1 CDS rplR NC_006087.1 2075702 2076076 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2075702..2076076) Leifsonia xyli subsp. xyli str. CTCB07 2939655 YP_062840.1 CDS rplF NC_006087.1 2076079 2076615 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2076079..2076615) Leifsonia xyli subsp. xyli str. CTCB07 2938344 YP_062841.1 CDS rpsH NC_006087.1 2076622 2077020 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2076622..2077020) Leifsonia xyli subsp. xyli str. CTCB07 2938968 YP_062842.1 CDS rplE NC_006087.1 2077137 2077724 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2077137..2077724) Leifsonia xyli subsp. xyli str. CTCB07 2938555 YP_062843.1 CDS rplX NC_006087.1 2077724 2078083 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2077724..2078083) Leifsonia xyli subsp. xyli str. CTCB07 2938388 YP_062844.1 CDS rplN NC_006087.1 2078087 2078455 R identified by sequence similarity; 50S ribosomal protein L14 complement(2078087..2078455) Leifsonia xyli subsp. xyli str. CTCB07 2938763 YP_062845.1 CDS rpsQ NC_006087.1 2078452 2078757 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2078452..2078757) Leifsonia xyli subsp. xyli str. CTCB07 2938346 YP_062846.1 CDS rpmC NC_006087.1 2078757 2079101 R identified by sequence similarity; 50S ribosomal protein L29 complement(2078757..2079101) Leifsonia xyli subsp. xyli str. CTCB07 2939699 YP_062847.1 CDS rplP NC_006087.1 2079101 2079520 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2079101..2079520) Leifsonia xyli subsp. xyli str. CTCB07 2938553 YP_062848.1 CDS rpsC NC_006087.1 2079523 2080293 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2079523..2080293) Leifsonia xyli subsp. xyli str. CTCB07 2939844 YP_062849.1 CDS rplV NC_006087.1 2080293 2080703 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2080293..2080703) Leifsonia xyli subsp. xyli str. CTCB07 2939896 YP_062850.1 CDS rpsS NC_006087.1 2080729 2081010 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2080729..2081010) Leifsonia xyli subsp. xyli str. CTCB07 2938498 YP_062851.1 CDS rplB NC_006087.1 2081035 2081874 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2081035..2081874) Leifsonia xyli subsp. xyli str. CTCB07 2940453 YP_062852.1 CDS rplW NC_006087.1 2081899 2082198 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2081899..2082198) Leifsonia xyli subsp. xyli str. CTCB07 2938554 YP_062853.1 CDS rplD NC_006087.1 2082198 2082863 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2082198..2082863) Leifsonia xyli subsp. xyli str. CTCB07 2939571 YP_062854.1 CDS rplC NC_006087.1 2082868 2083527 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2082868..2083527) Leifsonia xyli subsp. xyli str. CTCB07 2939211 YP_062855.1 CDS rpsJ NC_006087.1 2083542 2083850 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2083542..2083850) Leifsonia xyli subsp. xyli str. CTCB07 2939468 YP_062856.1 CDS Lxx20370 NC_006087.1 2084173 2085420 R identified by sequence similarity; glycosyltransferase complement(2084173..2085420) Leifsonia xyli subsp. xyli str. CTCB07 2938524 YP_062857.1 CDS Lxx20375 NC_006087.1 2085485 2086225 R identified by sequence similarity; glycosyltransferase complement(2085485..2086225) Leifsonia xyli subsp. xyli str. CTCB07 2939735 YP_062858.1 CDS Lxx20380 NC_006087.1 2087596 2089161 R identified by sequence similarity; hemagglutinin-like protein complement(2087596..2089161) Leifsonia xyli subsp. xyli str. CTCB07 2940041 YP_062859.1 CDS tufA NC_006087.1 2089294 2090487 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2089294..2090487) Leifsonia xyli subsp. xyli str. CTCB07 2940223 YP_062860.1 CDS fusA NC_006087.1 2090620 2092722 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2090620..2092722) Leifsonia xyli subsp. xyli str. CTCB07 2939643 YP_062861.1 CDS rpsG NC_006087.1 2092819 2093289 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2092819..2093289) Leifsonia xyli subsp. xyli str. CTCB07 2939445 YP_062862.1 CDS rpsL NC_006087.1 2093289 2093663 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2093289..2093663) Leifsonia xyli subsp. xyli str. CTCB07 2938728 YP_062863.1 CDS Lxx20430 NC_006087.1 2094023 2094517 R hypothetical protein complement(2094023..2094517) Leifsonia xyli subsp. xyli str. CTCB07 2940024 YP_062864.1 CDS Lxx20440 NC_006087.1 2094531 2095622 R hypothetical protein complement(2094531..2095622) Leifsonia xyli subsp. xyli str. CTCB07 2940310 YP_062865.1 CDS mtsC NC_006087.1 2095774 2096700 R identified by sequence similarity; ABC-type Mn2+/Zn2+ transport systems, permease complement(2095774..2096700) Leifsonia xyli subsp. xyli str. CTCB07 2940420 YP_062866.1 CDS Lxx20480 NC_006087.1 2097457 2098305 R hypothetical protein complement(2097457..2098305) Leifsonia xyli subsp. xyli str. CTCB07 2939530 YP_062867.1 CDS Lxx20520 NC_006087.1 2100751 2102613 R hypothetical protein complement(2100751..2102613) Leifsonia xyli subsp. xyli str. CTCB07 2938785 YP_062868.1 CDS Lxx20530 NC_006087.1 2102708 2102959 R hypothetical protein complement(2102708..2102959) Leifsonia xyli subsp. xyli str. CTCB07 2939307 YP_062869.1 CDS Lxx20540 NC_006087.1 2103050 2103595 R hypothetical protein complement(2103050..2103595) Leifsonia xyli subsp. xyli str. CTCB07 2940561 YP_062870.1 CDS Lxx20580 NC_006087.1 2105886 2106572 R hypothetical protein complement(2105886..2106572) Leifsonia xyli subsp. xyli str. CTCB07 2939133 YP_062871.1 CDS rpmJ NC_006087.1 2107265 2107387 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(2107265..2107387) Leifsonia xyli subsp. xyli str. CTCB07 2940457 YP_062872.1 CDS tnp NC_006087.1 2108480 2109691 R identified by sequence similarity; transposase, ISlxx5 complement(2108480..2109691) Leifsonia xyli subsp. xyli str. CTCB07 2939092 YP_062873.1 CDS rpoC NC_006087.1 2112062 2115937 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(2112062..2115937) Leifsonia xyli subsp. xyli str. CTCB07 2939471 YP_062874.1 CDS rpoB NC_006087.1 2115985 2119482 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(2115985..2119482) Leifsonia xyli subsp. xyli str. CTCB07 2938547 YP_062875.1 CDS Lxx20650 NC_006087.1 2119833 2120699 D identified by sequence similarity; hypothetical protein 2119833..2120699 Leifsonia xyli subsp. xyli str. CTCB07 2938419 YP_062876.1 CDS Lxx20660 NC_006087.1 2120738 2121355 R identified by sequence similarity; hypothetical protein complement(2120738..2121355) Leifsonia xyli subsp. xyli str. CTCB07 2938489 YP_062877.1 CDS Lxx20670 NC_006087.1 2121356 2121931 R identified by sequence similarity; hypothetical protein complement(2121356..2121931) Leifsonia xyli subsp. xyli str. CTCB07 2938557 YP_062878.1 CDS Lxx20680 NC_006087.1 2122025 2122345 R hypothetical protein complement(2122025..2122345) Leifsonia xyli subsp. xyli str. CTCB07 2938364 YP_062879.1 CDS Lxx20690 NC_006087.1 2122963 2123163 R hypothetical protein complement(2122963..2123163) Leifsonia xyli subsp. xyli str. CTCB07 2939617 YP_062880.1 CDS Lxx20740 NC_006087.1 2129556 2130104 R hypothetical protein complement(2129556..2130104) Leifsonia xyli subsp. xyli str. CTCB07 2938813 YP_062881.1 CDS Lxx20760 NC_006087.1 2130580 2131383 D identified by sequence similarity; hypothetical protein 2130580..2131383 Leifsonia xyli subsp. xyli str. CTCB07 2938976 YP_062882.1 CDS Lxx20770 NC_006087.1 2131441 2133804 R identified by sequence similarity; ATP-dependent DNA helicase complement(2131441..2133804) Leifsonia xyli subsp. xyli str. CTCB07 2938563 YP_062883.1 CDS rhlE NC_006087.1 2133858 2135453 D identified by sequence similarity; ATP-dependent RNA helicase 2133858..2135453 Leifsonia xyli subsp. xyli str. CTCB07 2940347 YP_062884.1 CDS Lxx20790 NC_006087.1 2135512 2136069 D hypothetical protein 2135512..2136069 Leifsonia xyli subsp. xyli str. CTCB07 2939641 YP_062885.1 CDS Lxx20800 NC_006087.1 2136332 2136907 R identified by sequence similarity; hypothetical protein complement(2136332..2136907) Leifsonia xyli subsp. xyli str. CTCB07 2940333 YP_062886.1 CDS Lxx20810 NC_006087.1 2137027 2137677 D identified by sequence similarity; hypothetical protein 2137027..2137677 Leifsonia xyli subsp. xyli str. CTCB07 2938552 YP_062887.1 CDS Lxx20840 NC_006087.1 2139972 2140757 D identified by sequence similarity; DNA glycosylase 2139972..2140757 Leifsonia xyli subsp. xyli str. CTCB07 2940334 YP_062888.1 CDS cpsA NC_006087.1 2140969 2142615 D identified by sequence similarity; LytR family transcriptional regulator 2140969..2142615 Leifsonia xyli subsp. xyli str. CTCB07 2939444 YP_062889.1 CDS Lxx20860 NC_006087.1 2142827 2143231 D identified by sequence similarity; hypothetical protein 2142827..2143231 Leifsonia xyli subsp. xyli str. CTCB07 2940033 YP_062890.1 CDS tetR NC_006087.1 2143212 2143823 R identified by sequence similarity; TetR family transcriptional regulator complement(2143212..2143823) Leifsonia xyli subsp. xyli str. CTCB07 2940517 YP_062891.1 CDS bioY NC_006087.1 2143879 2144520 D identified by sequence similarity; biotin synthase 2143879..2144520 Leifsonia xyli subsp. xyli str. CTCB07 2939077 YP_062892.1 CDS menE NC_006087.1 2144517 2145575 D identified by sequence similarity; O-succinylbenzoate-CoA ligase 2144517..2145575 Leifsonia xyli subsp. xyli str. CTCB07 2940122 YP_062893.1 CDS yhfS NC_006087.1 2145568 2146683 D identified by sequence similarity; acetyl-CoA acyltransferase 2145568..2146683 Leifsonia xyli subsp. xyli str. CTCB07 2939432 YP_062894.1 CDS cbiO NC_006087.1 2146680 2147366 D identified by sequence similarity; ABC- transporter, ATP-binding protein 2146680..2147366 Leifsonia xyli subsp. xyli str. CTCB07 2939544 YP_062895.1 CDS cbiQ NC_006087.1 2147360 2147971 D identified by sequence similarity; ABC-type cobalt transport system, permease 2147360..2147971 Leifsonia xyli subsp. xyli str. CTCB07 2939841 YP_062896.1 CDS Lxx20930 NC_006087.1 2147968 2148321 D identified by sequence similarity; hypothetical protein 2147968..2148321 Leifsonia xyli subsp. xyli str. CTCB07 2939214 YP_062897.1 CDS Lxx20940 NC_006087.1 2148501 2148989 D identified by sequence similarity; hypothetical protein 2148501..2148989 Leifsonia xyli subsp. xyli str. CTCB07 2938718 YP_062898.1 CDS mntH NC_006087.1 2149617 2150888 R identified by sequence similarity; transport protein complement(2149617..2150888) Leifsonia xyli subsp. xyli str. CTCB07 2939670 YP_062899.1 CDS lytR NC_006087.1 2151041 2152327 D identified by sequence similarity; LytR family transcriptional regulator 2151041..2152327 Leifsonia xyli subsp. xyli str. CTCB07 2939538 YP_062900.1 CDS Lxx20970 NC_006087.1 2152402 2152683 D hypothetical protein 2152402..2152683 Leifsonia xyli subsp. xyli str. CTCB07 2940531 YP_062901.1 CDS feoA NC_006087.1 2152832 2153020 D identified by sequence similarity; ferrous iron transport protein A 2152832..2153020 Leifsonia xyli subsp. xyli str. CTCB07 2938556 YP_062902.1 CDS feoB NC_006087.1 2153017 2154918 D identified by sequence similarity; ferrous iron transport protein B 2153017..2154918 Leifsonia xyli subsp. xyli str. CTCB07 2939726 YP_062903.1 CDS Lxx21000 NC_006087.1 2155011 2155481 D identified by sequence similarity; hypothetical protein 2155011..2155481 Leifsonia xyli subsp. xyli str. CTCB07 2938336 YP_062904.1 CDS Lxx21010 NC_006087.1 2155489 2156709 R identified by sequence similarity; iron-dependent peroxidase complement(2155489..2156709) Leifsonia xyli subsp. xyli str. CTCB07 2938449 YP_062905.1 CDS Lxx21020 NC_006087.1 2156706 2157170 R identified by sequence similarity; hypothetical protein complement(2156706..2157170) Leifsonia xyli subsp. xyli str. CTCB07 2939125 YP_062906.1 CDS Lxx21030 NC_006087.1 2157448 2157894 D hypothetical protein 2157448..2157894 Leifsonia xyli subsp. xyli str. CTCB07 2940210 YP_062907.1 CDS Lxx21040 NC_006087.1 2157894 2158550 D identified by sequence similarity; hypothetical protein 2157894..2158550 Leifsonia xyli subsp. xyli str. CTCB07 2938559 YP_062908.1 CDS Lxx21050 NC_006087.1 2158837 2158908 D hypothetical protein 2158837..2158908 Leifsonia xyli subsp. xyli str. CTCB07 2940156 YP_062909.1 CDS Lxx21060 NC_006087.1 2159099 2161018 R hypothetical protein complement(2159099..2161018) Leifsonia xyli subsp. xyli str. CTCB07 2939529 YP_062910.1 CDS Lxx21070 NC_006087.1 2161693 2162364 R hypothetical protein complement(2161693..2162364) Leifsonia xyli subsp. xyli str. CTCB07 2940534 YP_062911.1 CDS Lxx21080 NC_006087.1 2162572 2163915 R identified by sequence similarity; N-acetyl-glucosamine transferase complement(2162572..2163915) Leifsonia xyli subsp. xyli str. CTCB07 2940325 YP_062912.1 CDS wecB NC_006087.1 2163912 2165060 R identified by sequence similarity; UDP-N-acetylglucosamine 2-epimerase complement(2163912..2165060) Leifsonia xyli subsp. xyli str. CTCB07 2938824 YP_062913.1 CDS Lxx21090 NC_006087.1 2165057 2165611 R hypothetical protein complement(2165057..2165611) Leifsonia xyli subsp. xyli str. CTCB07 2940215 YP_062914.1 CDS Lxx21110 NC_006087.1 2165892 2166953 R hypothetical protein complement(2165892..2166953) Leifsonia xyli subsp. xyli str. CTCB07 2940189 YP_062915.1 CDS lepB NC_006087.1 2167969 2168523 D identified by sequence similarity; signal peptidase I 2167969..2168523 Leifsonia xyli subsp. xyli str. CTCB07 2939122 YP_062916.1 CDS Lxx21140 NC_006087.1 2170576 2171220 D identified by sequence similarity; two-component system response regulator 2170576..2171220 Leifsonia xyli subsp. xyli str. CTCB07 2939435 YP_062917.1 CDS tnp NC_006087.1 2172615 2173826 D identified by sequence similarity; transposase, ISlxx5 2172615..2173826 Leifsonia xyli subsp. xyli str. CTCB07 2938519 YP_062918.1 CDS Lxx21170 NC_006087.1 2173924 2174889 D hypothetical protein 2173924..2174889 Leifsonia xyli subsp. xyli str. CTCB07 2939616 YP_062919.1 CDS mtgC NC_006087.1 2174886 2175602 R identified by sequence similarity; Mg++ transport, ATPase protein complement(2174886..2175602) Leifsonia xyli subsp. xyli str. CTCB07 2939743 YP_062920.1 CDS Lxx21190 NC_006087.1 2175612 2178290 R identified by sequence similarity; Mg++ transport, ATPase protein complement(2175612..2178290) Leifsonia xyli subsp. xyli str. CTCB07 2939586 YP_062921.1 CDS Lxx21200 NC_006087.1 2179226 2179642 R hypothetical protein complement(2179226..2179642) Leifsonia xyli subsp. xyli str. CTCB07 2938937 YP_062922.1 CDS Lxx21210 NC_006087.1 2179736 2182246 D hypothetical protein 2179736..2182246 Leifsonia xyli subsp. xyli str. CTCB07 2940573 YP_062923.1 CDS Lxx21220 NC_006087.1 2182308 2183048 R identified by sequence similarity; hypothetical protein complement(2182308..2183048) Leifsonia xyli subsp. xyli str. CTCB07 2938264 YP_062924.1 CDS Lxx21230 NC_006087.1 2183074 2185611 R identified by sequence similarity; LuxR family transcriptional regulator complement(2183074..2185611) Leifsonia xyli subsp. xyli str. CTCB07 2938476 YP_062925.1 CDS Lxx21240 NC_006087.1 2185601 2186662 R identified by sequence similarity; hypothetical protein complement(2185601..2186662) Leifsonia xyli subsp. xyli str. CTCB07 2940509 YP_062926.1 CDS Lxx21250 NC_006087.1 2186655 2187209 R identified by sequence similarity; type I signal peptidase complement(2186655..2187209) Leifsonia xyli subsp. xyli str. CTCB07 2940257 YP_062927.1 CDS Lxx21260 NC_006087.1 2187327 2187932 R hypothetical protein complement(2187327..2187932) Leifsonia xyli subsp. xyli str. CTCB07 2939873 YP_062928.1 CDS Lxx21280 NC_006087.1 2189770 2190597 D identified by sequence similarity; hypothetical protein 2189770..2190597 Leifsonia xyli subsp. xyli str. CTCB07 2939459 YP_062929.1 CDS Lxx21290 NC_006087.1 2190607 2190861 R hypothetical protein complement(2190607..2190861) Leifsonia xyli subsp. xyli str. CTCB07 2938739 YP_062930.1 CDS Lxx21300 NC_006087.1 2191017 2191952 R hypothetical protein complement(2191017..2191952) Leifsonia xyli subsp. xyli str. CTCB07 2939705 YP_062931.1 CDS radA NC_006087.1 2192093 2193478 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(2192093..2193478) Leifsonia xyli subsp. xyli str. CTCB07 2938375 YP_062932.1 CDS Lxx21320 NC_006087.1 2193561 2194220 R identified by sequence similarity; hypothetical protein complement(2193561..2194220) Leifsonia xyli subsp. xyli str. CTCB07 2938269 YP_062933.1 CDS Lxx21330 NC_006087.1 2194242 2194739 R catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis; N-acetylglutamate synthase complement(2194242..2194739) Leifsonia xyli subsp. xyli str. CTCB07 2939291 YP_062934.1 CDS clpC NC_006087.1 2194841 2197360 R identified by sequence similarity; ATP-dependent Clp protease, ATP-binding subunit complement(2194841..2197360) Leifsonia xyli subsp. xyli str. CTCB07 2940558 YP_062935.1 CDS Lxx21350 NC_006087.1 2197494 2197916 R hypothetical protein complement(2197494..2197916) Leifsonia xyli subsp. xyli str. CTCB07 2939452 YP_062936.1 CDS cls NC_006087.1 2198142 2199605 R identified by sequence similarity; cardiolipin synthase complement(2198142..2199605) Leifsonia xyli subsp. xyli str. CTCB07 2939154 YP_062937.1 CDS Lxx21380 NC_006087.1 2200857 2201030 R hypothetical protein complement(2200857..2201030) Leifsonia xyli subsp. xyli str. CTCB07 2939980 YP_062938.1 CDS Lxx21390 NC_006087.1 2201131 2201955 D identified by sequence similarity; hypothetical protein 2201131..2201955 Leifsonia xyli subsp. xyli str. CTCB07 2940419 YP_062939.1 CDS lysS NC_006087.1 2201985 2203499 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(2201985..2203499) Leifsonia xyli subsp. xyli str. CTCB07 2940020 YP_062940.1 CDS panC NC_006087.1 2203542 2204405 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(2203542..2204405) Leifsonia xyli subsp. xyli str. CTCB07 2940613 YP_062941.1 CDS Lxx21420 NC_006087.1 2204541 2205323 R identified by sequence similarity; hypothetical protein complement(2204541..2205323) Leifsonia xyli subsp. xyli str. CTCB07 2938902 YP_062942.1 CDS Lxx21430 NC_006087.1 2205320 2207194 R identified by sequence similarity; hypothetical protein complement(2205320..2207194) Leifsonia xyli subsp. xyli str. CTCB07 2940403 YP_062943.1 CDS Lxx21440 NC_006087.1 2207191 2207793 R identified by sequence similarity; hypothetical protein complement(2207191..2207793) Leifsonia xyli subsp. xyli str. CTCB07 2939230 YP_062944.1 CDS folK NC_006087.1 2208130 2208666 R identified by sequence similarity; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2208130..2208666) Leifsonia xyli subsp. xyli str. CTCB07 2939290 YP_062945.1 CDS folB NC_006087.1 2208663 2209043 R identified by sequence similarity; dihydroneopterin aldolase complement(2208663..2209043) Leifsonia xyli subsp. xyli str. CTCB07 2938361 YP_062946.1 CDS folP NC_006087.1 2209027 2209851 R identified by sequence similarity; dihydropteroate synthase complement(2209027..2209851) Leifsonia xyli subsp. xyli str. CTCB07 2940074 YP_062947.1 CDS folE NC_006087.1 2209836 2210411 R identified by sequence similarity; GTP cyclohydrolase I complement(2209836..2210411) Leifsonia xyli subsp. xyli str. CTCB07 2939497 YP_062948.1 CDS ftsH NC_006087.1 2210423 2212426 R identified by sequence similarity; cell division protein complement(2210423..2212426) Leifsonia xyli subsp. xyli str. CTCB07 2939421 YP_062949.1 CDS hpt NC_006087.1 2212511 2213062 R identified by sequence similarity; hypoxanthine phosphoribosyltransferase complement(2212511..2213062) Leifsonia xyli subsp. xyli str. CTCB07 2940293 YP_062950.1 CDS Lxx21520 NC_006087.1 2213079 2214077 R identified by sequence similarity; hypothetical protein complement(2213079..2214077) Leifsonia xyli subsp. xyli str. CTCB07 2940259 YP_062951.1 CDS ppa NC_006087.1 2214209 2214700 D identified by sequence similarity; inorganic pyrophosphatase 2214209..2214700 Leifsonia xyli subsp. xyli str. CTCB07 2938714 YP_062952.1 CDS Lxx21540 NC_006087.1 2214764 2215966 R identified by sequence similarity; peptidoglycan lytic protein P45 complement(2214764..2215966) Leifsonia xyli subsp. xyli str. CTCB07 2940610 YP_062953.1 CDS Lxx21550 NC_006087.1 2216031 2217248 R identified by sequence similarity; cell wall binding protein complement(2216031..2217248) Leifsonia xyli subsp. xyli str. CTCB07 2940281 YP_062954.1 CDS Lxx21555 NC_006087.1 2217969 2218907 R identified by sequence similarity; phage-related integrase complement(2217969..2218907) Leifsonia xyli subsp. xyli str. CTCB07 2938727 YP_062955.1 CDS Lxx21590 NC_006087.1 2219132 2219275 R hypothetical protein complement(2219132..2219275) Leifsonia xyli subsp. xyli str. CTCB07 2940435 YP_062956.1 CDS int NC_006087.1 2219734 2219940 R identified by sequence similarity; integrase complement(2219734..2219940) Leifsonia xyli subsp. xyli str. CTCB07 2940000 YP_062957.1 CDS dctA NC_006087.1 2222095 2223288 D identified by sequence similarity; Na+/H+ dicarboxylate symporter 2222095..2223288 Leifsonia xyli subsp. xyli str. CTCB07 2940054 YP_062958.1 CDS Lxx21640 NC_006087.1 2223377 2225167 R identified by sequence similarity; hypothetical protein complement(2223377..2225167) Leifsonia xyli subsp. xyli str. CTCB07 2938518 YP_062959.1 CDS Lxx21650 NC_006087.1 2225234 2225959 R identified by sequence similarity; signal peptidase I complement(2225234..2225959) Leifsonia xyli subsp. xyli str. CTCB07 2939588 YP_062960.1 CDS Lxx21660 NC_006087.1 2226045 2226599 R hypothetical protein complement(2226045..2226599) Leifsonia xyli subsp. xyli str. CTCB07 2939275 YP_062961.1 CDS Lxx21670 NC_006087.1 2226739 2227680 R identified by sequence similarity; hypothetical protein complement(2226739..2227680) Leifsonia xyli subsp. xyli str. CTCB07 2938293 YP_062962.1 CDS Lxx21680 NC_006087.1 2231243 2231893 R identified by sequence similarity; ECF subfamily RNA polymerase sigma-70 factor complement(2231243..2231893) Leifsonia xyli subsp. xyli str. CTCB07 2940217 YP_062963.1 CDS Lxx21690 NC_006087.1 2232154 2234403 D identified by sequence similarity; LuxR family transcriptional regulator 2232154..2234403 Leifsonia xyli subsp. xyli str. CTCB07 2940368 YP_062964.1 CDS Lxx21700 NC_006087.1 2234765 2235265 D hypothetical protein 2234765..2235265 Leifsonia xyli subsp. xyli str. CTCB07 2940322 YP_062965.1 CDS asn NC_006087.1 2235523 2237361 D identified by sequence similarity; asparagine synthase 2235523..2237361 Leifsonia xyli subsp. xyli str. CTCB07 2940365 YP_062966.1 CDS Lxx21720 NC_006087.1 2237371 2237667 R identified by sequence similarity; hypothetical protein complement(2237371..2237667) Leifsonia xyli subsp. xyli str. CTCB07 2939827 YP_062967.1 CDS Lxx21730 NC_006087.1 2237877 2238173 D hypothetical protein 2237877..2238173 Leifsonia xyli subsp. xyli str. CTCB07 2940320 YP_062968.1 CDS Lxx21740 NC_006087.1 2238199 2238363 D hypothetical protein 2238199..2238363 Leifsonia xyli subsp. xyli str. CTCB07 2939076 YP_062969.1 CDS Lxx21750 NC_006087.1 2238458 2239498 D identified by sequence similarity; oxidoreductase 2238458..2239498 Leifsonia xyli subsp. xyli str. CTCB07 2940383 YP_062970.1 CDS tagA NC_006087.1 2241448 2242095 D identified by sequence similarity; UDP-N-acetyl-D-mannosaminuronic acid transferase 2241448..2242095 Leifsonia xyli subsp. xyli str. CTCB07 2940283 YP_062971.1 CDS Lxx21790 NC_006087.1 2242095 2242796 D hypothetical protein 2242095..2242796 Leifsonia xyli subsp. xyli str. CTCB07 2940263 YP_062972.1 CDS pip NC_006087.1 2242965 2243924 R identified by sequence similarity; prolyl aminopeptidase complement(2242965..2243924) Leifsonia xyli subsp. xyli str. CTCB07 2938266 YP_062973.1 CDS Lxx21810 NC_006087.1 2243972 2244508 D identified by sequence similarity; hypothetical protein 2243972..2244508 Leifsonia xyli subsp. xyli str. CTCB07 2939772 YP_062974.1 CDS acx2 NC_006087.1 2244573 2246639 R identified by sequence similarity; acyl-CoA oxidase complement(2244573..2246639) Leifsonia xyli subsp. xyli str. CTCB07 2938457 YP_062975.1 CDS recQ NC_006087.1 2246845 2248740 R identified by sequence similarity; ATP-dependent DNA helicase complement(2246845..2248740) Leifsonia xyli subsp. xyli str. CTCB07 2940132 YP_062976.1 CDS ansP NC_006087.1 2249180 2250727 D identified by sequence similarity; L-asparagine permease 2249180..2250727 Leifsonia xyli subsp. xyli str. CTCB07 2940390 YP_062977.1 CDS Lxx21850 NC_006087.1 2250815 2251423 D identified by sequence similarity; ABC-type transporter, permease 2250815..2251423 Leifsonia xyli subsp. xyli str. CTCB07 2940055 YP_062978.1 CDS Lxx21860 NC_006087.1 2251427 2253094 D identified by sequence similarity; ABC transporter ATP-binding protein 2251427..2253094 Leifsonia xyli subsp. xyli str. CTCB07 2940175 YP_062979.1 CDS Lxx21870 NC_006087.1 2253091 2253885 D identified by sequence similarity; cobalt ABC transporter permease 2253091..2253885 Leifsonia xyli subsp. xyli str. CTCB07 2938757 YP_062980.1 CDS Lxx21880 NC_006087.1 2253904 2254368 R identified by sequence similarity; MarR family transcriptional regulator complement(2253904..2254368) Leifsonia xyli subsp. xyli str. CTCB07 2938532 YP_062981.1 CDS Lxx21890 NC_006087.1 2255009 2257525 D identified by sequence similarity; LuxR family transcriptional regulator 2255009..2257525 Leifsonia xyli subsp. xyli str. CTCB07 2940144 YP_062982.1 CDS Lxx21915 NC_006087.1 2261249 2262439 D identified by sequence similarity; hypothetical protein 2261249..2262439 Leifsonia xyli subsp. xyli str. CTCB07 2939787 YP_062983.1 CDS Lxx21930 NC_006087.1 2262436 2262894 D identified by sequence similarity; hypothetical protein 2262436..2262894 Leifsonia xyli subsp. xyli str. CTCB07 2939075 YP_062984.1 CDS Lxx21940 NC_006087.1 2263058 2263675 R identified by sequence similarity; TetR family transcriptional regulator complement(2263058..2263675) Leifsonia xyli subsp. xyli str. CTCB07 2938363 YP_062985.1 CDS Lxx21960 NC_006087.1 2263733 2264767 D identified by sequence similarity; hypothetical protein 2263733..2264767 Leifsonia xyli subsp. xyli str. CTCB07 2938731 YP_062986.1 CDS Lxx21950 NC_006087.1 2264767 2266206 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2264767..2266206 Leifsonia xyli subsp. xyli str. CTCB07 2939255 YP_062987.1 CDS argG NC_006087.1 2266569 2268005 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2266569..2268005 Leifsonia xyli subsp. xyli str. CTCB07 2938256 YP_062988.1 CDS Lxx21980 NC_006087.1 2268018 2268977 R identified by sequence similarity; hypothetical protein complement(2268018..2268977) Leifsonia xyli subsp. xyli str. CTCB07 2940306 YP_062989.1 CDS Lxx21990 NC_006087.1 2269638 2269826 D hypothetical protein 2269638..2269826 Leifsonia xyli subsp. xyli str. CTCB07 2940295 YP_062990.1 CDS cutS NC_006087.1 2269854 2270732 R identified by sequence similarity; two-component system sensor protein complement(2269854..2270732) Leifsonia xyli subsp. xyli str. CTCB07 2940452 YP_062991.1 CDS cutR NC_006087.1 2270929 2271594 R identified by sequence similarity; two-component system regulatory protein complement(2270929..2271594) Leifsonia xyli subsp. xyli str. CTCB07 2940480 YP_062992.1 CDS Lxx22020 NC_006087.1 2271727 2272203 D hypothetical protein 2271727..2272203 Leifsonia xyli subsp. xyli str. CTCB07 2939839 YP_062993.1 CDS Lxx22050 NC_006087.1 2273303 2274004 D identified by sequence similarity; ABC transporter ATP binding protein 2273303..2274004 Leifsonia xyli subsp. xyli str. CTCB07 2940363 YP_062994.1 CDS Lxx22040 NC_006087.1 2274010 2275212 D identified by sequence similarity; hypothetical protein 2274010..2275212 Leifsonia xyli subsp. xyli str. CTCB07 2938281 YP_062995.1 CDS dbdD NC_006087.1 2275269 2276678 R identified by sequence similarity; L-2,4-diaminobutyrate decarboxylase complement(2275269..2276678) Leifsonia xyli subsp. xyli str. CTCB07 2940449 YP_062996.1 CDS Lxx22070 NC_006087.1 2277547 2278842 D identified by sequence similarity; hypothetical protein 2277547..2278842 Leifsonia xyli subsp. xyli str. CTCB07 2939578 YP_062997.1 CDS Lxx22090 NC_006087.1 2279525 2280058 D hypothetical protein 2279525..2280058 Leifsonia xyli subsp. xyli str. CTCB07 2939115 YP_062998.1 CDS deaD NC_006087.1 2280433 2281632 R identified by sequence similarity; ATP-dependent RNA helicase complement(2280433..2281632) Leifsonia xyli subsp. xyli str. CTCB07 2940576 YP_062999.1 CDS p49 NC_006087.1 2282357 2283814 D identified by sequence similarity; hypothetical protein 2282357..2283814 Leifsonia xyli subsp. xyli str. CTCB07 2940559 YP_063000.1 CDS Lxx22120 NC_006087.1 2284706 2285107 R hypothetical protein complement(2284706..2285107) Leifsonia xyli subsp. xyli str. CTCB07 2940530 YP_063001.1 CDS Lxx22130 NC_006087.1 2285597 2286421 R identified by sequence similarity; hypothetical protein complement(2285597..2286421) Leifsonia xyli subsp. xyli str. CTCB07 2939498 YP_063002.1 CDS Lxx22150 NC_006087.1 2287423 2288178 R identified by sequence similarity; IclR family transcriptional regulator complement(2287423..2288178) Leifsonia xyli subsp. xyli str. CTCB07 2940139 YP_063003.1 CDS hutH NC_006087.1 2288272 2289588 D identified by sequence similarity; histidine ammonia-lyase 2288272..2289588 Leifsonia xyli subsp. xyli str. CTCB07 2939470 YP_063004.1 CDS Lxx22210 NC_006087.1 2292791 2293657 D identified by sequence similarity; sugar ABC transporter solute-binding protein 2292791..2293657 Leifsonia xyli subsp. xyli str. CTCB07 2940315 YP_063005.1 CDS rbsA NC_006087.1 2293798 2295315 D identified by sequence similarity; ABC transporter ATP-binding protein 2293798..2295315 Leifsonia xyli subsp. xyli str. CTCB07 2939966 YP_063006.1 CDS rbsC NC_006087.1 2296407 2297273 D identified by sequence similarity; ABC transporter permease 2296407..2297273 Leifsonia xyli subsp. xyli str. CTCB07 2940127 YP_063007.1 CDS rin NC_006087.1 2297404 2297784 R identified by sequence similarity; DNA invertase complement(2297404..2297784) Leifsonia xyli subsp. xyli str. CTCB07 2938755 YP_063008.1 CDS Lxx22260 NC_006087.1 2297845 2298033 R hypothetical protein complement(2297845..2298033) Leifsonia xyli subsp. xyli str. CTCB07 2940510 YP_063009.1 CDS Lxx22270 NC_006087.1 2299693 2299875 R hypothetical protein complement(2299693..2299875) Leifsonia xyli subsp. xyli str. CTCB07 2939865 YP_063010.1 CDS tnp NC_006087.1 2301247 2301825 R identified by sequence similarity; transposase, undefined complement(2301247..2301825) Leifsonia xyli subsp. xyli str. CTCB07 2938764 YP_063011.1 CDS Lxx22340 NC_006087.1 2306671 2306847 D identified by sequence similarity; transposase 2306671..2306847 Leifsonia xyli subsp. xyli str. CTCB07 2940164 YP_063012.1 CDS o375 NC_006087.1 2307233 2308111 D identified by sequence similarity; hypothetical protein 2307233..2308111 Leifsonia xyli subsp. xyli str. CTCB07 2940395 YP_063013.1 CDS Lxx22360 NC_006087.1 2308417 2308794 D identified by sequence similarity; hypothetical protein 2308417..2308794 Leifsonia xyli subsp. xyli str. CTCB07 2938693 YP_063014.1 CDS Lxx22370 NC_006087.1 2309004 2309459 D hypothetical protein 2309004..2309459 Leifsonia xyli subsp. xyli str. CTCB07 2940370 YP_063015.1 CDS Lxx22380 NC_006087.1 2310623 2310856 R identified by sequence similarity; transposase complement(2310623..2310856) Leifsonia xyli subsp. xyli str. CTCB07 2940216 YP_063016.1 CDS tpase NC_006087.1 2310939 2312048 R identified by sequence similarity; transposase, ISlxx2 complement(2310939..2312048) Leifsonia xyli subsp. xyli str. CTCB07 2939385 YP_063017.1 CDS cspA NC_006087.1 2312601 2312822 D identified by sequence similarity; cold shock protein 2312601..2312822 Leifsonia xyli subsp. xyli str. CTCB07 2938696 YP_063018.1 CDS Lxx22410 NC_006087.1 2312822 2314072 D identified by sequence similarity; delta fatty acid desaturase 2312822..2314072 Leifsonia xyli subsp. xyli str. CTCB07 2939918 YP_063019.1 CDS tnp NC_006087.1 2314172 2314858 D identified by sequence similarity; transposase, undefined 2314172..2314858 Leifsonia xyli subsp. xyli str. CTCB07 2938819 YP_063020.1 CDS Lxx22440 NC_006087.1 2315530 2316186 R identified by sequence similarity; acid phosphatase complement(2315530..2316186) Leifsonia xyli subsp. xyli str. CTCB07 2940284 YP_063021.1 CDS Lxx22450 NC_006087.1 2317088 2318053 D identified by sequence similarity; transposase, undefined 2317088..2318053 Leifsonia xyli subsp. xyli str. CTCB07 2938395 YP_063022.1 CDS Lxx22460 NC_006087.1 2318199 2318546 D hypothetical protein 2318199..2318546 Leifsonia xyli subsp. xyli str. CTCB07 2940470 YP_063023.1 CDS dcsA NC_006087.1 2318650 2319570 D identified by sequence similarity; hypothetical protein 2318650..2319570 Leifsonia xyli subsp. xyli str. CTCB07 2938905 YP_063024.1 CDS Lxx22480 NC_006087.1 2319904 2320344 R identified by sequence similarity; stress-inducible protein complement(2319904..2320344) Leifsonia xyli subsp. xyli str. CTCB07 2939802 YP_063025.1 CDS Lxx22490 NC_006087.1 2320635 2321291 R identified by sequence similarity; two-component system regulatory protein complement(2320635..2321291) Leifsonia xyli subsp. xyli str. CTCB07 2938751 YP_063026.1 CDS Lxx22520 NC_006087.1 2322294 2322407 D hypothetical protein 2322294..2322407 Leifsonia xyli subsp. xyli str. CTCB07 2939289 YP_063027.1 CDS tnp NC_006087.1 2322653 2323864 D identified by sequence similarity; transposase, ISlxx5 2322653..2323864 Leifsonia xyli subsp. xyli str. CTCB07 2939767 YP_063028.1 CDS pntA NC_006087.1 2324684 2325841 D identified by sequence similarity; NADP-transhydrogenase 2324684..2325841 Leifsonia xyli subsp. xyli str. CTCB07 2939777 YP_063029.1 CDS Lxx22570 NC_006087.1 2325838 2326146 D identified by sequence similarity; pyridine transhydrogenase 2325838..2326146 Leifsonia xyli subsp. xyli str. CTCB07 2940498 YP_063030.1 CDS pntB NC_006087.1 2326143 2327564 D identified by sequence similarity; NADP-transhydrogenase oxidoreductase subunit beta 2326143..2327564 Leifsonia xyli subsp. xyli str. CTCB07 2938938 YP_063031.1 CDS tnp NC_006087.1 2327614 2328816 R identified by sequence similarity; transposase, undefined complement(2327614..2328816) Leifsonia xyli subsp. xyli str. CTCB07 2938360 YP_063032.1 CDS aldA NC_006087.1 2329051 2330580 D identified by sequence similarity; aldehyde dehydrogenase 2329051..2330580 Leifsonia xyli subsp. xyli str. CTCB07 2940489 YP_063033.1 CDS adh NC_006087.1 2330595 2331647 D identified by sequence similarity; alcohol dehydrogenase 2330595..2331647 Leifsonia xyli subsp. xyli str. CTCB07 2938974 YP_063034.1 CDS Lxx22620 NC_006087.1 2331658 2332137 D identified by sequence similarity; hypothetical protein 2331658..2332137 Leifsonia xyli subsp. xyli str. CTCB07 2938514 YP_063035.1 CDS Lxx22630 NC_006087.1 2332827 2333393 D hypothetical protein 2332827..2333393 Leifsonia xyli subsp. xyli str. CTCB07 2940524 YP_063036.1 CDS Lxx22650 NC_006087.1 2333530 2334141 R identified by sequence similarity; hypothetical protein complement(2333530..2334141) Leifsonia xyli subsp. xyli str. CTCB07 2938754 YP_063037.1 CDS Lxx22655 NC_006087.1 2334500 2335225 R identified by sequence similarity; hypothetical protein complement(2334500..2335225) Leifsonia xyli subsp. xyli str. CTCB07 2939952 YP_063038.1 CDS Lxx22660 NC_006087.1 2335510 2335734 D identified by sequence similarity; transposase 2335510..2335734 Leifsonia xyli subsp. xyli str. CTCB07 2938273 YP_063039.1 CDS Lxx22670 NC_006087.1 2335776 2336174 D identified by sequence similarity; transposase 2335776..2336174 Leifsonia xyli subsp. xyli str. CTCB07 2940079 YP_063040.1 CDS celA NC_006087.1 2336505 2338130 R identified by sequence similarity; cellulase complement(2336505..2338130) Leifsonia xyli subsp. xyli str. CTCB07 2940501 YP_063041.1 CDS Lxx22677 NC_006087.1 2339179 2339445 R identified by sequence similarity; hypothetical protein complement(2339179..2339445) Leifsonia xyli subsp. xyli str. CTCB07 2939129 YP_063042.1 CDS Lxx22678 NC_006087.1 2339442 2339717 R identified by sequence similarity; hypothetical protein complement(2339442..2339717) Leifsonia xyli subsp. xyli str. CTCB07 2940247 YP_063043.1 CDS tpase1 NC_006087.1 2341541 2342350 D identified by sequence similarity; transposase 2341541..2342350 Leifsonia xyli subsp. xyli str. CTCB07 2939971 YP_063044.1 CDS Lxx22708 NC_006087.1 2342825 2343247 D identified by sequence similarity; hypothetical protein 2342825..2343247 Leifsonia xyli subsp. xyli str. CTCB07 2939523 YP_063045.1 CDS Lxx22710 NC_006087.1 2343519 2344244 R identified by sequence similarity; lysozyme complement(2343519..2344244) Leifsonia xyli subsp. xyli str. CTCB07 2939355 YP_063046.1 CDS novC NC_006087.1 2347435 2348349 R identified by sequence similarity; flavine-dependent monooxygenase complement(2347435..2348349) Leifsonia xyli subsp. xyli str. CTCB07 2939398 YP_063047.1 CDS Lxx22740 NC_006087.1 2348501 2348722 D identified by sequence similarity; hypothetical protein 2348501..2348722 Leifsonia xyli subsp. xyli str. CTCB07 2939634 YP_063048.1 CDS purM NC_006087.1 2348963 2350081 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2348963..2350081) Leifsonia xyli subsp. xyli str. CTCB07 2939390 YP_063049.1 CDS purF NC_006087.1 2350517 2352076 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2350517..2352076) Leifsonia xyli subsp. xyli str. CTCB07 2939800 YP_063050.1 CDS Lxx22770 NC_006087.1 2352098 2352529 R hypothetical protein complement(2352098..2352529) Leifsonia xyli subsp. xyli str. CTCB07 2938245 YP_063051.1 CDS Lxx22790 NC_006087.1 2352552 2352908 R identified by sequence similarity; hypothetical protein complement(2352552..2352908) Leifsonia xyli subsp. xyli str. CTCB07 2940554 YP_063052.1 CDS purD NC_006087.1 2352966 2354219 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2352966..2354219 Leifsonia xyli subsp. xyli str. CTCB07 2939853 YP_063053.1 CDS purC NC_006087.1 2354315 2355214 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2354315..2355214 Leifsonia xyli subsp. xyli str. CTCB07 2939669 YP_063054.1 CDS albF NC_006087.1 2355304 2356842 R identified by sequence similarity; albicidin efflux pump complement(2355304..2356842) Leifsonia xyli subsp. xyli str. CTCB07 2938258 YP_063055.1 CDS Lxx22820 NC_006087.1 2356872 2357456 R identified by sequence similarity; hypothetical protein complement(2356872..2357456) Leifsonia xyli subsp. xyli str. CTCB07 2939826 YP_063056.1 CDS Lxx22830 NC_006087.1 2357667 2358575 D identified by sequence similarity; fragment of phage protein 2357667..2358575 Leifsonia xyli subsp. xyli str. CTCB07 2938786 YP_063057.1 CDS Lxx22840 NC_006087.1 2358585 2359322 R hypothetical protein complement(2358585..2359322) Leifsonia xyli subsp. xyli str. CTCB07 2939728 YP_063058.1 CDS Lxx22880 NC_006087.1 2363301 2363609 D identified by sequence similarity; hypothetical protein 2363301..2363609 Leifsonia xyli subsp. xyli str. CTCB07 2940205 YP_063059.1 CDS Lxx22890 NC_006087.1 2363621 2364145 D hypothetical protein 2363621..2364145 Leifsonia xyli subsp. xyli str. CTCB07 2938730 YP_063060.1 CDS Lxx22900 NC_006087.1 2364864 2365223 R hypothetical protein complement(2364864..2365223) Leifsonia xyli subsp. xyli str. CTCB07 2940463 YP_063061.1 CDS adh NC_006087.1 2365406 2366335 R identified by sequence similarity; alcohol dehydrogenase complement(2365406..2366335) Leifsonia xyli subsp. xyli str. CTCB07 2940209 YP_063062.1 CDS Lxx22920 NC_006087.1 2366500 2367174 R identified by sequence similarity; hydrolase complement(2366500..2367174) Leifsonia xyli subsp. xyli str. CTCB07 2939362 YP_063063.1 CDS pur NC_006087.1 2368872 2369129 D identified by sequence similarity; phosphoribosylformylglycinamidine synthase 2368872..2369129 Leifsonia xyli subsp. xyli str. CTCB07 2939874 YP_063064.1 CDS purQ NC_006087.1 2369129 2369827 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 2369129..2369827 Leifsonia xyli subsp. xyli str. CTCB07 2938964 YP_063065.1 CDS Lxx22980 NC_006087.1 2369969 2370145 D hypothetical protein 2369969..2370145 Leifsonia xyli subsp. xyli str. CTCB07 2939499 YP_063066.1 CDS Lxx22990 NC_006087.1 2370180 2370638 D identified by sequence similarity; hypothetical protein 2370180..2370638 Leifsonia xyli subsp. xyli str. CTCB07 2940358 YP_063067.1 CDS Lxx23000 NC_006087.1 2370719 2371264 D hypothetical protein 2370719..2371264 Leifsonia xyli subsp. xyli str. CTCB07 2939897 YP_063068.1 CDS Lxx23040 NC_006087.1 2374040 2375074 D identified by sequence similarity; LacI family transcription regulator 2374040..2375074 Leifsonia xyli subsp. xyli str. CTCB07 2939581 YP_063069.1 CDS dppA NC_006087.1 2375128 2376804 D identified by sequence similarity; ABC transporter substrate binding protein 2375128..2376804 Leifsonia xyli subsp. xyli str. CTCB07 2939601 YP_063070.1 CDS dppC NC_006087.1 2377682 2378608 D identified by sequence similarity; ABC transporter permease 2377682..2378608 Leifsonia xyli subsp. xyli str. CTCB07 2940427 YP_063071.1 CDS Lxx23100 NC_006087.1 2380216 2380647 R identified by sequence similarity; translational inhibitor protein complement(2380216..2380647) Leifsonia xyli subsp. xyli str. CTCB07 2939893 YP_063072.1 CDS Lxx23110 NC_006087.1 2380644 2380865 R hypothetical protein complement(2380644..2380865) Leifsonia xyli subsp. xyli str. CTCB07 2940526 YP_063073.1 CDS Lxx23120 NC_006087.1 2380964 2381590 D identified by sequence similarity; TetR family transcriptional regulator 2380964..2381590 Leifsonia xyli subsp. xyli str. CTCB07 2940481 YP_063074.1 CDS Lxx23130 NC_006087.1 2381587 2381853 D hypothetical protein 2381587..2381853 Leifsonia xyli subsp. xyli str. CTCB07 2938651 YP_063075.1 CDS purL NC_006087.1 2381911 2384229 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 2381911..2384229 Leifsonia xyli subsp. xyli str. CTCB07 2940500 YP_063076.1 CDS Lxx23150 NC_006087.1 2384253 2385161 R identified by sequence similarity; hypothetical protein complement(2384253..2385161) Leifsonia xyli subsp. xyli str. CTCB07 2938409 YP_063077.1 CDS Lxx23160 NC_006087.1 2385225 2385440 R hypothetical protein complement(2385225..2385440) Leifsonia xyli subsp. xyli str. CTCB07 2939387 YP_063078.1 CDS mrc NC_006087.1 2386160 2387365 R identified by sequence similarity; penicillin-binding protein complement(2386160..2387365) Leifsonia xyli subsp. xyli str. CTCB07 2940585 YP_063079.1 CDS Lxx23180 NC_006087.1 2387581 2388777 D identified by sequence similarity; luciferase-like monooxygenase 2387581..2388777 Leifsonia xyli subsp. xyli str. CTCB07 2938646 YP_063080.1 CDS Lxx23200 NC_006087.1 2388785 2389309 D identified by sequence similarity; NADH-dependent FMN reductase 2388785..2389309 Leifsonia xyli subsp. xyli str. CTCB07 2938272 YP_063081.1 CDS Lxx23210 NC_006087.1 2389316 2389474 D hypothetical protein 2389316..2389474 Leifsonia xyli subsp. xyli str. CTCB07 2939380 YP_063082.1 CDS Lxx23220 NC_006087.1 2389513 2390778 D identified by sequence similarity; glucosaminyltransferase 2389513..2390778 Leifsonia xyli subsp. xyli str. CTCB07 2940053 YP_063083.1 CDS Lxx23240 NC_006087.1 2391090 2391386 D hypothetical protein 2391090..2391386 Leifsonia xyli subsp. xyli str. CTCB07 2939807 YP_063084.1 CDS tyrA NC_006087.1 2391784 2392098 R catalyzes the interconversion of chorismate to prephenate; chorismate mutase complement(2391784..2392098) Leifsonia xyli subsp. xyli str. CTCB07 2940579 YP_063085.1 CDS Lxx23260 NC_006087.1 2392116 2393447 R identified by sequence similarity; hypothetical protein complement(2392116..2393447) Leifsonia xyli subsp. xyli str. CTCB07 2940490 YP_063086.1 CDS phnL NC_006087.1 2393444 2394178 R identified by sequence similarity; ABC transporter ATP binding protein complement(2393444..2394178) Leifsonia xyli subsp. xyli str. CTCB07 2940240 YP_063087.1 CDS Lxx23270 NC_006087.1 2394261 2395643 D identified by sequence similarity; hypothetical protein 2394261..2395643 Leifsonia xyli subsp. xyli str. CTCB07 2940468 YP_063088.1 CDS purA NC_006087.1 2395744 2397060 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2395744..2397060) Leifsonia xyli subsp. xyli str. CTCB07 2939323 YP_063089.1 CDS Lxx23300 NC_006087.1 2397279 2397956 D identified by sequence similarity; TetR family transcriptional regulator 2397279..2397956 Leifsonia xyli subsp. xyli str. CTCB07 2940226 YP_063090.1 CDS Lxx23320 NC_006087.1 2398666 2400519 D identified by sequence similarity; hypothetical protein 2398666..2400519 Leifsonia xyli subsp. xyli str. CTCB07 2938470 YP_063091.1 CDS Lxx23330 NC_006087.1 2400566 2401408 D identified by sequence similarity; hypothetical protein 2400566..2401408 Leifsonia xyli subsp. xyli str. CTCB07 2938494 YP_063092.1 CDS spoU NC_006087.1 2401512 2402168 R identified by sequence similarity; tRNA/rRNA methyltransferase complement(2401512..2402168) Leifsonia xyli subsp. xyli str. CTCB07 2940537 YP_063093.1 CDS nagD NC_006087.1 2402297 2403100 D identified by sequence similarity; N-acetylglucosamine metabolism protein 2402297..2403100 Leifsonia xyli subsp. xyli str. CTCB07 2940428 YP_063094.1 CDS Lxx23380 NC_006087.1 2403686 2405479 R identified by sequence similarity; hypothetical protein complement(2403686..2405479) Leifsonia xyli subsp. xyli str. CTCB07 2939797 YP_063095.1 CDS pyrE NC_006087.1 2405539 2406087 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(2405539..2406087) Leifsonia xyli subsp. xyli str. CTCB07 2939144 YP_063096.1 CDS xthA NC_006087.1 2406200 2407042 D identified by sequence similarity; exodeoxyribonuclease III 2406200..2407042 Leifsonia xyli subsp. xyli str. CTCB07 2940455 YP_063097.1 CDS Lxx23430 NC_006087.1 2409847 2410017 R hypothetical protein complement(2409847..2410017) Leifsonia xyli subsp. xyli str. CTCB07 2939316 YP_063098.1 CDS lacF NC_006087.1 2410204 2411121 R identified by sequence similarity; ABC transporter permease complement(2410204..2411121) Leifsonia xyli subsp. xyli str. CTCB07 2938275 YP_063099.1 CDS Lxx23460 NC_006087.1 2411178 2411348 R hypothetical protein complement(2411178..2411348) Leifsonia xyli subsp. xyli str. CTCB07 2939783 YP_063100.1 CDS Lxx23470 NC_006087.1 2411483 2412565 R identified by sequence similarity; sugar ABC transporter sugar-binding protein complement(2411483..2412565) Leifsonia xyli subsp. xyli str. CTCB07 2940600 YP_063101.1 CDS Lxx23480 NC_006087.1 2412781 2414046 R identified by sequence similarity; hypothetical protein complement(2412781..2414046) Leifsonia xyli subsp. xyli str. CTCB07 2939557 YP_063102.1 CDS Lxx23490 NC_006087.1 2414224 2414736 R identified by sequence similarity; oxidoreductase complement(2414224..2414736) Leifsonia xyli subsp. xyli str. CTCB07 2940411 YP_063103.1 CDS Lxx23530 NC_006087.1 2416568 2417200 R hypothetical protein complement(2416568..2417200) Leifsonia xyli subsp. xyli str. CTCB07 2940264 YP_063104.1 CDS Lxx23570 NC_006087.1 2419454 2420755 R identified by sequence similarity; ABC transporter sugar binding protein complement(2419454..2420755) Leifsonia xyli subsp. xyli str. CTCB07 2938984 YP_063105.1 CDS purR NC_006087.1 2420899 2421930 D identified by sequence similarity; LacI family transcription regulator 2420899..2421930 Leifsonia xyli subsp. xyli str. CTCB07 2940290 YP_063106.1 CDS Lxx23590 NC_006087.1 2422562 2422879 D identified by sequence similarity; hypothetical protein 2422562..2422879 Leifsonia xyli subsp. xyli str. CTCB07 2940286 YP_063107.1 CDS adh2 NC_006087.1 2422886 2423935 R identified by sequence similarity; alcohol dehydrogenase complement(2422886..2423935) Leifsonia xyli subsp. xyli str. CTCB07 2938462 YP_063108.1 CDS gntR NC_006087.1 2423946 2424917 R identified by sequence similarity; GntR family transcriptional regulator complement(2423946..2424917) Leifsonia xyli subsp. xyli str. CTCB07 2938274 YP_063109.1 CDS clpB NC_006087.1 2425288 2427492 R identified by sequence similarity; ATP-dependent Clp protease, ATP-binding subunit complement(2425288..2427492) Leifsonia xyli subsp. xyli str. CTCB07 2939626 YP_063110.1 CDS Lxx23640 NC_006087.1 2427489 2428001 R hypothetical protein complement(2427489..2428001) Leifsonia xyli subsp. xyli str. CTCB07 2938383 YP_063111.1 CDS proY NC_006087.1 2429357 2430715 R identified by sequence similarity; amino acid permease complement(2429357..2430715) Leifsonia xyli subsp. xyli str. CTCB07 2939212 YP_063112.1 CDS Lxx23680 NC_006087.1 2431075 2433114 R identified by sequence similarity; hypothetical protein complement(2431075..2433114) Leifsonia xyli subsp. xyli str. CTCB07 2939741 YP_063113.1 CDS Lxx23670 NC_006087.1 2433111 2433779 R identified by sequence similarity; transport integral membrane protein complement(2433111..2433779) Leifsonia xyli subsp. xyli str. CTCB07 2940196 YP_063114.1 CDS Lxx23690 NC_006087.1 2433776 2434495 R identified by sequence similarity; hypothetical protein complement(2433776..2434495) Leifsonia xyli subsp. xyli str. CTCB07 2939596 YP_063115.1 CDS Lxx23700 NC_006087.1 2434601 2435218 R hypothetical protein complement(2434601..2435218) Leifsonia xyli subsp. xyli str. CTCB07 2940520 YP_063116.1 CDS Lxx23710 NC_006087.1 2435229 2436413 R identified by sequence similarity; hypothetical protein complement(2435229..2436413) Leifsonia xyli subsp. xyli str. CTCB07 2940048 YP_063117.1 CDS lepB NC_006087.1 2436657 2437055 R identified by sequence similarity; signal peptidase I complement(2436657..2437055) Leifsonia xyli subsp. xyli str. CTCB07 2938983 YP_063118.1 CDS hspR NC_006087.1 2438828 2439241 R identified by sequence similarity; heat shock protein complement(2438828..2439241) Leifsonia xyli subsp. xyli str. CTCB07 2940521 YP_063119.1 CDS dnaJ NC_006087.1 2439252 2440238 R identified by sequence similarity; DnaJ protein complement(2439252..2440238) Leifsonia xyli subsp. xyli str. CTCB07 2939514 YP_063120.1 CDS grpE NC_006087.1 2440351 2441019 R identified by sequence similarity; molecular chaperone GrpE complement(2440351..2441019) Leifsonia xyli subsp. xyli str. CTCB07 2940350 YP_063121.1 CDS dnaK NC_006087.1 2441016 2442890 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(2441016..2442890) Leifsonia xyli subsp. xyli str. CTCB07 2938358 YP_063122.1 CDS Lxx23790 NC_006087.1 2443170 2443379 D hypothetical protein 2443170..2443379 Leifsonia xyli subsp. xyli str. CTCB07 2940010 YP_063123.1 CDS Lxx23800 NC_006087.1 2443423 2444145 D identified by sequence similarity; hypothetical protein 2443423..2444145 Leifsonia xyli subsp. xyli str. CTCB07 2939480 YP_063124.1 CDS idi NC_006087.1 2444335 2444892 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 2444335..2444892 Leifsonia xyli subsp. xyli str. CTCB07 2939344 YP_063125.1 CDS Lxx23820 NC_006087.1 2445059 2445547 R identified by sequence similarity; hypothetical protein complement(2445059..2445547) Leifsonia xyli subsp. xyli str. CTCB07 2940133 YP_063126.1 CDS dcd NC_006087.1 2445572 2446177 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2445572..2446177) Leifsonia xyli subsp. xyli str. CTCB07 2940261 YP_063127.1 CDS Lxx23845 NC_006087.1 2448950 2449282 R hypothetical protein complement(2448950..2449282) Leifsonia xyli subsp. xyli str. CTCB07 2940417 YP_063128.1 CDS Lxx23860 NC_006087.1 2449779 2450027 D hypothetical protein 2449779..2450027 Leifsonia xyli subsp. xyli str. CTCB07 2940291 YP_063129.1 CDS Lxx23870 NC_006087.1 2451127 2451435 R identified by sequence similarity; phage repressor protein complement(2451127..2451435) Leifsonia xyli subsp. xyli str. CTCB07 2939308 YP_063130.1 CDS Lxx23880 NC_006087.1 2453421 2454203 D identified by sequence similarity; prophage antirepressor protein 2453421..2454203 Leifsonia xyli subsp. xyli str. CTCB07 2940140 YP_063131.1 CDS Lxx23890 NC_006087.1 2454715 2454900 D hypothetical protein 2454715..2454900 Leifsonia xyli subsp. xyli str. CTCB07 2938332 YP_063132.1 CDS 47 NC_006087.1 2455440 2456435 D identified by sequence similarity; phage recombination protein 2455440..2456435 Leifsonia xyli subsp. xyli str. CTCB07 2940299 YP_063133.1 CDS 35 NC_006087.1 2456456 2457241 D identified by sequence similarity; phage recombination protein 2456456..2457241 Leifsonia xyli subsp. xyli str. CTCB07 2940567 YP_063134.1 CDS Lxx23920 NC_006087.1 2457286 2457669 D identified by sequence similarity; hypothetical protein 2457286..2457669 Leifsonia xyli subsp. xyli str. CTCB07 2940550 YP_063135.1 CDS Lxx23930 NC_006087.1 2457666 2458004 D hypothetical protein 2457666..2458004 Leifsonia xyli subsp. xyli str. CTCB07 2938908 YP_063136.1 CDS Lxx23950 NC_006087.1 2459401 2459532 D hypothetical protein 2459401..2459532 Leifsonia xyli subsp. xyli str. CTCB07 2939333 YP_063137.1 CDS Lxx23960 NC_006087.1 2460093 2460320 D hypothetical protein 2460093..2460320 Leifsonia xyli subsp. xyli str. CTCB07 2940540 YP_063138.1 CDS Lxx23970 NC_006087.1 2460317 2460535 D hypothetical protein 2460317..2460535 Leifsonia xyli subsp. xyli str. CTCB07 2939994 YP_063139.1 CDS Lxx23990 NC_006087.1 2460796 2461392 D hypothetical protein 2460796..2461392 Leifsonia xyli subsp. xyli str. CTCB07 2940569 YP_063140.1 CDS Lxx24000 NC_006087.1 2461389 2462090 D hypothetical protein 2461389..2462090 Leifsonia xyli subsp. xyli str. CTCB07 2939809 YP_063141.1 CDS Lxx24010 NC_006087.1 2462725 2463129 D hypothetical protein 2462725..2463129 Leifsonia xyli subsp. xyli str. CTCB07 2940239 YP_063142.1 CDS 4 NC_006087.1 2463155 2464558 D identified by sequence similarity; phage-related terminase 2463155..2464558 Leifsonia xyli subsp. xyli str. CTCB07 2938740 YP_063143.1 CDS Lxx24030 NC_006087.1 2464619 2464714 D hypothetical protein 2464619..2464714 Leifsonia xyli subsp. xyli str. CTCB07 2938899 YP_063144.1 CDS 35 NC_006087.1 2464711 2465955 D identified by sequence similarity; phage-related portal protein 2464711..2465955 Leifsonia xyli subsp. xyli str. CTCB07 2939794 YP_063145.1 CDS 35 NC_006087.1 2465993 2466658 D identified by sequence similarity; phage-related head maturation protease 2465993..2466658 Leifsonia xyli subsp. xyli str. CTCB07 2939569 YP_063146.1 CDS Lxx24060 NC_006087.1 2466826 2468133 D identified by sequence similarity; phage-related major capsid protein 2466826..2468133 Leifsonia xyli subsp. xyli str. CTCB07 2940241 YP_063147.1 CDS Lxx24070 NC_006087.1 2468211 2468384 D hypothetical protein 2468211..2468384 Leifsonia xyli subsp. xyli str. CTCB07 2939947 YP_063148.1 CDS Lxx24080 NC_006087.1 2468415 2469017 D hypothetical protein 2468415..2469017 Leifsonia xyli subsp. xyli str. CTCB07 2939622 YP_063149.1 CDS Lxx24100 NC_006087.1 2469490 2469687 D hypothetical protein 2469490..2469687 Leifsonia xyli subsp. xyli str. CTCB07 2939975 YP_063150.1 CDS 39 NC_006087.1 2469684 2470682 D identified by sequence similarity; hypothetical protein 2469684..2470682 Leifsonia xyli subsp. xyli str. CTCB07 2940553 YP_063151.1 CDS Lxx24120 NC_006087.1 2470708 2471151 D hypothetical protein 2470708..2471151 Leifsonia xyli subsp. xyli str. CTCB07 2940089 YP_063152.1 CDS Lxx24130 NC_006087.1 2471152 2471451 D hypothetical protein 2471152..2471451 Leifsonia xyli subsp. xyli str. CTCB07 2939623 YP_063153.1 CDS Lxx24140 NC_006087.1 2471490 2471594 D hypothetical protein 2471490..2471594 Leifsonia xyli subsp. xyli str. CTCB07 2940528 YP_063154.1 CDS Lxx24150 NC_006087.1 2471605 2471793 D hypothetical protein 2471605..2471793 Leifsonia xyli subsp. xyli str. CTCB07 2940491 YP_063155.1 CDS Lxx24160 NC_006087.1 2471780 2473006 D identified by sequence similarity; hypothetical protein 2471780..2473006 Leifsonia xyli subsp. xyli str. CTCB07 2938392 YP_063156.1 CDS 44 NC_006087.1 2473015 2473857 D identified by sequence similarity; hypothetical protein 2473015..2473857 Leifsonia xyli subsp. xyli str. CTCB07 2940433 YP_063157.1 CDS Lxx24180 NC_006087.1 2473862 2475034 D identified by sequence similarity; hypothetical protein 2473862..2475034 Leifsonia xyli subsp. xyli str. CTCB07 2939436 YP_063158.1 CDS Lxx24185 NC_006087.1 2475239 2476249 D identified by sequence similarity; hypothetical protein 2475239..2476249 Leifsonia xyli subsp. xyli str. CTCB07 2940102 YP_063159.1 CDS Lxx24200 NC_006087.1 2476302 2476823 D hypothetical protein 2476302..2476823 Leifsonia xyli subsp. xyli str. CTCB07 2940372 YP_063160.1 CDS lysL NC_006087.1 2477533 2478477 D identified by sequence similarity; phage-related lysozyme 2477533..2478477 Leifsonia xyli subsp. xyli str. CTCB07 2940543 YP_063161.1 CDS Lxx24240 NC_006087.1 2478474 2478896 R hypothetical protein complement(2478474..2478896) Leifsonia xyli subsp. xyli str. CTCB07 2938953 YP_063162.1 CDS pat1 NC_006087.1 2480407 2481348 D identified by sequence similarity; pat1 protein 2480407..2481348 Leifsonia xyli subsp. xyli str. CTCB07 2939831 YP_063163.1 CDS Lxx24252 NC_006087.1 2481980 2482999 R identified by sequence similarity; hypothetical protein complement(2481980..2482999) Leifsonia xyli subsp. xyli str. CTCB07 2940154 YP_063164.1 CDS Lxx24254 NC_006087.1 2483463 2483993 D hypothetical protein 2483463..2483993 Leifsonia xyli subsp. xyli str. CTCB07 2939663 YP_063165.1 CDS Lxx24260 NC_006087.1 2485248 2486006 D identified by sequence similarity; GntR family transcriptional regulator 2485248..2486006 Leifsonia xyli subsp. xyli str. CTCB07 2938461 YP_063166.1 CDS Lxx24280 NC_006087.1 2489276 2490046 D identified by sequence similarity; phage-related integrase/recombinase 2489276..2490046 Leifsonia xyli subsp. xyli str. CTCB07 2939924 YP_063167.1 CDS Lxx24290 NC_006087.1 2490043 2490387 D hypothetical protein 2490043..2490387 Leifsonia xyli subsp. xyli str. CTCB07 2940011 YP_063168.1 CDS Lxx24300 NC_006087.1 2490411 2490995 D hypothetical protein 2490411..2490995 Leifsonia xyli subsp. xyli str. CTCB07 2940519 YP_063169.1 CDS Lxx24310 NC_006087.1 2494500 2494763 R hypothetical protein complement(2494500..2494763) Leifsonia xyli subsp. xyli str. CTCB07 2939778 YP_063170.1 CDS Lxx24320 NC_006087.1 2495260 2496279 R identified by sequence similarity; myo-inositol dehydrogenase complement(2495260..2496279) Leifsonia xyli subsp. xyli str. CTCB07 2939273 YP_063171.1 CDS Lxx24330 NC_006087.1 2496322 2497239 R identified by sequence similarity; myo-inositol catabolism protein complement(2496322..2497239) Leifsonia xyli subsp. xyli str. CTCB07 2939651 YP_063172.1 CDS Lxx24410 NC_006087.1 2501690 2502475 R identified by sequence similarity; hypothetical protein complement(2501690..2502475) Leifsonia xyli subsp. xyli str. CTCB07 2939986 YP_063173.1 CDS Lxx24425 NC_006087.1 2504566 2504697 D identified by sequence similarity; hypothetical protein 2504566..2504697 Leifsonia xyli subsp. xyli str. CTCB07 2938760 YP_063174.1 CDS Lxx24440 NC_006087.1 2504871 2504975 D hypothetical protein 2504871..2504975 Leifsonia xyli subsp. xyli str. CTCB07 2940393 YP_063175.1 CDS Lxx24450 NC_006087.1 2505035 2505205 R hypothetical protein complement(2505035..2505205) Leifsonia xyli subsp. xyli str. CTCB07 2938276 YP_063176.1 CDS cspA NC_006087.1 2506507 2506710 R identified by sequence similarity; cold shock protein complement(2506507..2506710) Leifsonia xyli subsp. xyli str. CTCB07 2938468 YP_063177.1 CDS czcD NC_006087.1 2506907 2507845 D identified by sequence similarity; cobalt-zinc-cadmium efflux permease 2506907..2507845 Leifsonia xyli subsp. xyli str. CTCB07 2939251 YP_063178.1 CDS Lxx24480 NC_006087.1 2508014 2508568 D identified by sequence similarity; hypothetical protein 2508014..2508568 Leifsonia xyli subsp. xyli str. CTCB07 2938957 YP_063179.1 CDS Lxx24490 NC_006087.1 2509160 2509645 R identified by sequence similarity; hypothetical protein complement(2509160..2509645) Leifsonia xyli subsp. xyli str. CTCB07 2938377 YP_063180.1 CDS Lxx24510 NC_006087.1 2510711 2511055 D hypothetical protein 2510711..2511055 Leifsonia xyli subsp. xyli str. CTCB07 2939394 YP_063181.1 CDS Lxx24520 NC_006087.1 2511079 2511450 R identified by sequence similarity; hypothetical protein complement(2511079..2511450) Leifsonia xyli subsp. xyli str. CTCB07 2940447 YP_063182.1 CDS Lxx24530 NC_006087.1 2512195 2514345 R identified by sequence similarity; hypothetical protein complement(2512195..2514345) Leifsonia xyli subsp. xyli str. CTCB07 2939419 YP_063183.1 CDS Lxx24540 NC_006087.1 2514677 2515267 D identified by sequence similarity; TetR family transcriptional regulator 2514677..2515267 Leifsonia xyli subsp. xyli str. CTCB07 2939894 YP_063184.1 CDS Lxx24550 NC_006087.1 2515313 2515717 R identified by sequence similarity; hypothetical protein complement(2515313..2515717) Leifsonia xyli subsp. xyli str. CTCB07 2940418 YP_063185.1 CDS Lxx24630 NC_006087.1 2520585 2521061 R identified by sequence similarity; hypothetical protein complement(2520585..2521061) Leifsonia xyli subsp. xyli str. CTCB07 2939336 YP_063186.1 CDS Lxx24640 NC_006087.1 2521119 2522540 D identified by sequence similarity; arginine/ornithine antiporter 2521119..2522540 Leifsonia xyli subsp. xyli str. CTCB07 2938958 YP_063187.1 CDS lysR NC_006087.1 2522626 2523543 R identified by sequence similarity; LysR family transcriptional regulator complement(2522626..2523543) Leifsonia xyli subsp. xyli str. CTCB07 2938291 YP_063188.1 CDS Lxx24680 NC_006087.1 2525108 2525470 D hypothetical protein 2525108..2525470 Leifsonia xyli subsp. xyli str. CTCB07 2939297 YP_063189.1 CDS Lxx24690 NC_006087.1 2525543 2526256 D hypothetical protein 2525543..2526256 Leifsonia xyli subsp. xyli str. CTCB07 2940235 YP_063190.1 CDS Lxx24700 NC_006087.1 2526335 2526652 R hypothetical protein complement(2526335..2526652) Leifsonia xyli subsp. xyli str. CTCB07 2939112 YP_063191.1 CDS Lxx24710 NC_006087.1 2526787 2527158 R hypothetical protein complement(2526787..2527158) Leifsonia xyli subsp. xyli str. CTCB07 2938939 YP_063192.1 CDS Lxx24720 NC_006087.1 2527597 2528397 D identified by sequence similarity; oxidoreductase 2527597..2528397 Leifsonia xyli subsp. xyli str. CTCB07 2939668 YP_063193.1 CDS Lxx24740 NC_006087.1 2528394 2529413 D identified by sequence similarity; oxidoreductase 2528394..2529413 Leifsonia xyli subsp. xyli str. CTCB07 2940142 YP_063194.1 CDS Lxx24760 NC_006087.1 2529645 2530214 D hypothetical protein 2529645..2530214 Leifsonia xyli subsp. xyli str. CTCB07 2939887 YP_063195.1 CDS Lxx24770 NC_006087.1 2530245 2530988 R hypothetical protein complement(2530245..2530988) Leifsonia xyli subsp. xyli str. CTCB07 2939943 YP_063196.1 CDS Lxx24780 NC_006087.1 2531001 2531843 R hypothetical protein complement(2531001..2531843) Leifsonia xyli subsp. xyli str. CTCB07 2939662 YP_063197.1 CDS Lxx24790 NC_006087.1 2532111 2532287 R hypothetical protein complement(2532111..2532287) Leifsonia xyli subsp. xyli str. CTCB07 2940346 YP_063198.1 CDS Lxx24800 NC_006087.1 2532776 2533051 R hypothetical protein complement(2532776..2533051) Leifsonia xyli subsp. xyli str. CTCB07 2940273 YP_063199.1 CDS Lxx24805 NC_006087.1 2533048 2533815 R identified by sequence similarity; integrase complement(2533048..2533815) Leifsonia xyli subsp. xyli str. CTCB07 2940377 YP_063200.1 CDS Lxx24810 NC_006087.1 2533819 2533962 R hypothetical protein complement(2533819..2533962) Leifsonia xyli subsp. xyli str. CTCB07 2939320 YP_063201.1 CDS Lxx24820 NC_006087.1 2534040 2534264 D hypothetical protein 2534040..2534264 Leifsonia xyli subsp. xyli str. CTCB07 2939528 YP_063202.1 CDS Lxx24830 NC_006087.1 2534807 2535262 R hypothetical protein complement(2534807..2535262) Leifsonia xyli subsp. xyli str. CTCB07 2939914 YP_063203.1 CDS Lxx24840 NC_006087.1 2536120 2536572 D identified by sequence similarity; hypothetical protein 2536120..2536572 Leifsonia xyli subsp. xyli str. CTCB07 2939850 YP_063204.1 CDS hmuO NC_006087.1 2537177 2537827 D identified by sequence similarity; heme oxygenase 2537177..2537827 Leifsonia xyli subsp. xyli str. CTCB07 2940575 YP_063205.1 CDS Lxx24870 NC_006087.1 2537843 2538196 R identified by sequence similarity; hypothetical protein complement(2537843..2538196) Leifsonia xyli subsp. xyli str. CTCB07 2940456 YP_063206.1 CDS pknK NC_006087.1 2541873 2544797 R identified by sequence similarity; serine/threonine kinase complement(2541873..2544797) Leifsonia xyli subsp. xyli str. CTCB07 2939992 YP_063207.1 CDS Lxx24930 NC_006087.1 2544794 2545213 R hypothetical protein complement(2544794..2545213) Leifsonia xyli subsp. xyli str. CTCB07 2940376 YP_063208.1 CDS Lxx24950 NC_006087.1 2548704 2549744 D hypothetical protein 2548704..2549744 Leifsonia xyli subsp. xyli str. CTCB07 2939946 YP_063209.1 CDS Lxx24960 NC_006087.1 2549698 2551710 R identified by sequence similarity; hypothetical protein complement(2549698..2551710) Leifsonia xyli subsp. xyli str. CTCB07 2939313 YP_063210.1 CDS Lxx24970 NC_006087.1 2551842 2552126 R identified by sequence similarity; DNA-binding HU protein complement(2551842..2552126) Leifsonia xyli subsp. xyli str. CTCB07 2939257 YP_063211.1 CDS rpsN NC_006087.1 2552342 2552647 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(2552342..2552647) Leifsonia xyli subsp. xyli str. CTCB07 2940301 YP_063212.1 CDS rpmG NC_006087.1 2552650 2552817 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(2552650..2552817) Leifsonia xyli subsp. xyli str. CTCB07 2939804 YP_063213.1 CDS rpmB NC_006087.1 2552817 2553053 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(2552817..2553053) Leifsonia xyli subsp. xyli str. CTCB07 2940548 YP_063214.1 CDS fur NC_006087.1 2553192 2553608 R identified by sequence similarity; ferric uptake regulator family protein complement(2553192..2553608) Leifsonia xyli subsp. xyli str. CTCB07 2940244 YP_063215.1 CDS znuB NC_006087.1 2553618 2554475 R identified by sequence similarity; ABC transporter permease complement(2553618..2554475) Leifsonia xyli subsp. xyli str. CTCB07 2940040 YP_063216.1 CDS fhuC NC_006087.1 2554472 2555311 R identified by sequence similarity; ABC transporter ATP-binding protein complement(2554472..2555311) Leifsonia xyli subsp. xyli str. CTCB07 2940045 YP_063217.1 CDS Lxx25040 NC_006087.1 2555329 2556225 R identified by sequence similarity; ABC transporter solute binding protein complement(2555329..2556225) Leifsonia xyli subsp. xyli str. CTCB07 2939613 YP_063218.1 CDS pdhC NC_006087.1 2556312 2557670 R identified by sequence similarity; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(2556312..2557670) Leifsonia xyli subsp. xyli str. CTCB07 2940497 YP_063219.1 CDS pdhB NC_006087.1 2557714 2558727 R identified by sequence similarity; pyruvate dehydrogenase E1 component subunit beta complement(2557714..2558727) Leifsonia xyli subsp. xyli str. CTCB07 2940400 YP_063220.1 CDS pdhA NC_006087.1 2558877 2560016 R identified by sequence similarity; pyruvate dehydrogenase E1 component subunit alpha complement(2558877..2560016) Leifsonia xyli subsp. xyli str. CTCB07 2940330 YP_063221.1 CDS hisC2 NC_006087.1 2560021 2561106 R identified by sequence similarity; aminotransferase complement(2560021..2561106) Leifsonia xyli subsp. xyli str. CTCB07 2939350 YP_063222.1 CDS Lxx25090 NC_006087.1 2561298 2561684 D identified by sequence similarity; hypothetical protein 2561298..2561684 Leifsonia xyli subsp. xyli str. CTCB07 2938513 YP_063223.1 CDS purB NC_006087.1 2561774 2563153 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2561774..2563153 Leifsonia xyli subsp. xyli str. CTCB07 2940412 YP_063224.1 CDS Lxx25110 NC_006087.1 2563181 2563648 R hypothetical protein complement(2563181..2563648) Leifsonia xyli subsp. xyli str. CTCB07 2938806 YP_063225.1 CDS gntR NC_006087.1 2564642 2565307 D identified by sequence similarity; GntR family transcriptional regulator 2564642..2565307 Leifsonia xyli subsp. xyli str. CTCB07 2938732 YP_063226.1 CDS dnaB NC_006087.1 2565710 2567083 R identified by sequence similarity; replicative DNA helicase complement(2565710..2567083) Leifsonia xyli subsp. xyli str. CTCB07 2939401 YP_063227.1 CDS rplI NC_006087.1 2567607 2568059 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2567607..2568059) Leifsonia xyli subsp. xyli str. CTCB07 2940487 YP_063228.1 CDS rpsR NC_006087.1 2568071 2568334 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(2568071..2568334) Leifsonia xyli subsp. xyli str. CTCB07 2939327 YP_063229.1 CDS ssb NC_006087.1 2568398 2568910 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(2568398..2568910) Leifsonia xyli subsp. xyli str. CTCB07 2939931 YP_063230.1 CDS rpsF NC_006087.1 2568915 2569301 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2568915..2569301) Leifsonia xyli subsp. xyli str. CTCB07 2939089 YP_063231.1 CDS pcnB NC_006087.1 2569602 2571038 R identified by sequence similarity; tRNA nucleotidyltransferase; poly(A) polymerase complement(2569602..2571038) Leifsonia xyli subsp. xyli str. CTCB07 2938304 YP_063232.1 CDS Lxx25200 NC_006087.1 2571136 2573382 D identified by sequence similarity; hypothetical protein 2571136..2573382 Leifsonia xyli subsp. xyli str. CTCB07 2939328 YP_063233.1 CDS mviN NC_006087.1 2573375 2574991 D identified by sequence similarity; hypothetical protein 2573375..2574991 Leifsonia xyli subsp. xyli str. CTCB07 2939301 YP_063234.1 CDS trxB NC_006087.1 2575068 2576054 D identified by sequence similarity; thioredoxin-disulfide reductase 2575068..2576054 Leifsonia xyli subsp. xyli str. CTCB07 2940341 YP_063235.1 CDS trxA NC_006087.1 2576068 2576394 D identified by sequence similarity; thioredoxin 2576068..2576394 Leifsonia xyli subsp. xyli str. CTCB07 2939424 YP_063236.1 CDS avtA NC_006087.1 2576529 2577851 D identified by sequence similarity; valine-pyruvate aminotransferase 2576529..2577851 Leifsonia xyli subsp. xyli str. CTCB07 2939153 YP_063237.1 CDS parB NC_006087.1 2578843 2579802 R identified by sequence similarity; chromosome partitioning protein complement(2578843..2579802) Leifsonia xyli subsp. xyli str. CTCB07 2939325 YP_063238.1 CDS parA NC_006087.1 2579802 2580590 R identified by sequence similarity; chromosome partitioning protein complement(2579802..2580590) Leifsonia xyli subsp. xyli str. CTCB07 2939293 YP_063239.1 CDS gidB NC_006087.1 2580885 2581514 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(2580885..2581514) Leifsonia xyli subsp. xyli str. CTCB07 2938479 YP_063240.1 CDS Lxx25260 NC_006087.1 2581529 2582038 R identified by sequence similarity; hypothetical protein complement(2581529..2582038) Leifsonia xyli subsp. xyli str. CTCB07 2940398 YP_063241.1 CDS yidC NC_006087.1 2582083 2583057 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(2582083..2583057) Leifsonia xyli subsp. xyli str. CTCB07 2939696 YP_063242.1 CDS Lxx25275 NC_006087.1 2583068 2583325 R identified by sequence similarity; hypothetical protein complement(2583068..2583325) Leifsonia xyli subsp. xyli str. CTCB07 2940557 YP_063243.1 CDS rpmH NC_006087.1 2583799 2583936 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(2583799..2583936) Leifsonia xyli subsp. xyli str. CTCB07 2940060 Lxx00090 tRNA Ile NC_006087.1 10986 11065 D tRNA-Ile 10986..11065 Leifsonia xyli subsp. xyli str. CTCB07 2940193 Lxx00100 tRNA Ala NC_006087.1 11075 11150 D tRNA-Ala 11075..11150 Leifsonia xyli subsp. xyli str. CTCB07 2940109 Lxx00280 tRNA Leu NC_006087.1 28490 28579 D tRNA-Leu 28490..28579 Leifsonia xyli subsp. xyli str. CTCB07 2938771 Lxx01610 tRNA Met NC_006087.1 161086 161162 R tRNA-Met complement(161086..161162) Leifsonia xyli subsp. xyli str. CTCB07 2940100 Lxx01620 tRNA Thr NC_006087.1 161194 161271 R tRNA-Thr complement(161194..161271) Leifsonia xyli subsp. xyli str. CTCB07 2939354 Lxx01890 tRNA Tyr NC_006087.1 183370 183457 D tRNA-Tyr 183370..183457 Leifsonia xyli subsp. xyli str. CTCB07 2939042 Lxx02160 tRNA Arg NC_006087.1 216011 216086 R tRNA-Arg complement(216011..216086) Leifsonia xyli subsp. xyli str. CTCB07 2940087 Lxx02320 tRNA Ser NC_006087.1 232050 232141 R tRNA-Ser complement(232050..232141) Leifsonia xyli subsp. xyli str. CTCB07 2939716 Lxx02330 tRNA Ser NC_006087.1 232468 232558 R tRNA-Ser complement(232468..232558) Leifsonia xyli subsp. xyli str. CTCB07 2938867 Lxx02880 tRNA Trp NC_006087.1 290058 290136 D tRNA-Trp 290058..290136 Leifsonia xyli subsp. xyli str. CTCB07 2939162 Lxx03390 tRNA Ser NC_006087.1 334516 334606 R tRNA-Ser complement(334516..334606) Leifsonia xyli subsp. xyli str. CTCB07 2938249 Lxx03580 tRNA Pro NC_006087.1 360885 360964 R tRNA-Pro complement(360885..360964) Leifsonia xyli subsp. xyli str. CTCB07 2938838 Lxx04110 tRNA Thr NC_006087.1 414101 414179 D tRNA-Thr 414101..414179 Leifsonia xyli subsp. xyli str. CTCB07 2939620 Lxx05760 tRNA Pro NC_006087.1 585871 585950 D tRNA-Pro 585871..585950 Leifsonia xyli subsp. xyli str. CTCB07 2938366 Lxx05940 tRNA Ala NC_006087.1 603549 603627 D tRNA-Ala 603549..603627 Leifsonia xyli subsp. xyli str. CTCB07 2939769 Lxx06790 tRNA Arg NC_006087.1 675490 675568 R tRNA-Arg complement(675490..675568) Leifsonia xyli subsp. xyli str. CTCB07 2939050 Lxx07810 tRNA Gly NC_006087.1 791145 791218 R tRNA-Gly complement(791145..791218) Leifsonia xyli subsp. xyli str. CTCB07 2938835 Lxx07820 tRNA Pro NC_006087.1 791319 791399 D tRNA-Pro 791319..791399 Leifsonia xyli subsp. xyli str. CTCB07 2940424 Lxx08140 tRNA Ala NC_006087.1 821712 821790 D tRNA-Ala 821712..821790 Leifsonia xyli subsp. xyli str. CTCB07 2939335 Lxx08210 tRNA Leu NC_006087.1 828968 829058 R tRNA-Leu complement(828968..829058) Leifsonia xyli subsp. xyli str. CTCB07 2939781 Lxx08590 tRNA Asn NC_006087.1 870541 870619 D tRNA-Asn 870541..870619 Leifsonia xyli subsp. xyli str. CTCB07 2938626 Lxx08640 tRNA Met NC_006087.1 874676 874755 D tRNA-Met 874676..874755 Leifsonia xyli subsp. xyli str. CTCB07 2939284 Lxx09310 tRNA Met NC_006087.1 956662 956741 R tRNA-Met complement(956662..956741) Leifsonia xyli subsp. xyli str. CTCB07 2938282 Lxx09570 tRNA Glu NC_006087.1 980250 980328 D tRNA-Glu 980250..980328 Leifsonia xyli subsp. xyli str. CTCB07 2938257 Lxx10620 tRNA Val NC_006087.1 1089308 1089386 R tRNA-Val complement(1089308..1089386) Leifsonia xyli subsp. xyli str. CTCB07 2938345 Lxx10630 tRNA Gly NC_006087.1 1089574 1089652 D tRNA-Gly 1089574..1089652 Leifsonia xyli subsp. xyli str. CTCB07 2940313 Lxx10640 tRNA Cys NC_006087.1 1089717 1089790 D tRNA-Cys 1089717..1089790 Leifsonia xyli subsp. xyli str. CTCB07 2939553 Lxx10650 tRNA Val NC_006087.1 1089810 1089884 D tRNA-Val 1089810..1089884 Leifsonia xyli subsp. xyli str. CTCB07 2939371 Lxx11380 tRNA Leu NC_006087.1 1168466 1168555 R tRNA-Leu complement(1168466..1168555) Leifsonia xyli subsp. xyli str. CTCB07 2939583 Lxx12680 tRNA Val NC_006087.1 1320715 1320793 D tRNA-Val 1320715..1320793 Leifsonia xyli subsp. xyli str. CTCB07 2938447 Lxx12900 tRNA Arg NC_006087.1 1344095 1344173 R tRNA-Arg complement(1344095..1344173) Leifsonia xyli subsp. xyli str. CTCB07 2938446 Lxx13060 tRNA Gln NC_006087.1 1359697 1359771 R tRNA-Gln complement(1359697..1359771) Leifsonia xyli subsp. xyli str. CTCB07 2940337 Lxx13390 tRNA Lys NC_006087.1 1390092 1390170 R tRNA-Lys complement(1390092..1390170) Leifsonia xyli subsp. xyli str. CTCB07 2940039 Lxx13530 tRNA Leu NC_006087.1 1406516 1406598 D tRNA-Leu 1406516..1406598 Leifsonia xyli subsp. xyli str. CTCB07 2940278 Lxx14140 tRNA His NC_006087.1 1462639 1462717 R tRNA-His complement(1462639..1462717) Leifsonia xyli subsp. xyli str. CTCB07 2938650 Lxx17020 tRNA Leu NC_006087.1 1767375 1767454 D tRNA-Leu 1767375..1767454 Leifsonia xyli subsp. xyli str. CTCB07 2939370 Lxx17440 tRNA Gln NC_006087.1 1810888 1810965 R tRNA-Gln complement(1810888..1810965) Leifsonia xyli subsp. xyli str. CTCB07 2939221 Lxx17850 tRNA Arg NC_006087.1 1851490 1851567 R tRNA-Arg complement(1851490..1851567) Leifsonia xyli subsp. xyli str. CTCB07 2939550 Lxx18170 tRNA Thr NC_006087.1 1879265 1879343 R tRNA-Thr complement(1879265..1879343) Leifsonia xyli subsp. xyli str. CTCB07 2938550 Lxx18500 tRNA Lys NC_006087.1 1910035 1910113 D tRNA-Lys 1910035..1910113 Leifsonia xyli subsp. xyli str. CTCB07 2940454 Lxx21270 tRNA Ser NC_006087.1 2189596 2189688 R tRNA-Ser complement(2189596..2189688) Leifsonia xyli subsp. xyli str. CTCB07 2939961 Lxx21560 tRNA Glu NC_006087.1 2217597 2217672 D tRNA-Glu 2217597..2217672 Leifsonia xyli subsp. xyli str. CTCB07 2940404 Lxx21570 tRNA Asp NC_006087.1 2217721 2217800 D tRNA-Asp 2217721..2217800 Leifsonia xyli subsp. xyli str. CTCB07 2939546 Lxx21580 tRNA Phe NC_006087.1 2217856 2217934 D tRNA-Phe 2217856..2217934 Leifsonia xyli subsp. xyli str. CTCB07 2940276 Lxx23840 tRNA Gly NC_006087.1 2447451 2447527 D tRNA-Gly 2447451..2447527 Leifsonia xyli subsp. xyli str. CTCB07 2940574 Lxx01380 rRNA Lxx01380 NC_006087.1 133817 135263 D 16S ribosomal RNA 133817..135263 Leifsonia xyli subsp. xyli str. CTCB07 2938767 Lxx01390 rRNA Lxx01390 NC_006087.1 135816 138903 D 23S ribosomal RNA 135816..138903 Leifsonia xyli subsp. xyli str. CTCB07 2939006 Lxx01400 rRNA Lxx01400 NC_006087.1 139040 139203 D 5S ribosomal RNA 139040..139203 Leifsonia xyli subsp. xyli str. CTCB07 2939090