-- dump date 20140619_131520 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 395495000001 SEQ_END SEQ_END NC_010524.1 4909403 4909403 DR NC_010524.1; contig end 4909403..4909403 Leptothrix cholodnii SP-6 YP_001789042.1 CDS dnaA NC_010524.1 72 1604 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 72..1604 Leptothrix cholodnii SP-6 6160507 YP_001789043.1 CDS Lcho_0002 NC_010524.1 1718 2863 D KEGG: mpt:Mpe_A0002 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1718..2863 Leptothrix cholodnii SP-6 6161734 YP_001789044.1 CDS Lcho_0003 NC_010524.1 2965 5559 D KEGG: mpt:Mpe_A0003 DNA topoisomerase (ATP-hydrolyzing); TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 2965..5559 Leptothrix cholodnii SP-6 6161735 YP_001789045.1 CDS Lcho_0004 NC_010524.1 5756 6268 D KEGG: pna:Pnap_1125 hypothetical protein; hypothetical protein 5756..6268 Leptothrix cholodnii SP-6 6161736 YP_001789046.1 CDS Lcho_0005 NC_010524.1 6287 7186 R PFAM: regulatory protein LysR; KEGG: pna:Pnap_3443 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6287..7186) Leptothrix cholodnii SP-6 6160264 YP_001789047.1 CDS Lcho_0006 NC_010524.1 7230 7544 R KEGG: ajs:Ajs_2095 hypothetical protein; hypothetical protein complement(7230..7544) Leptothrix cholodnii SP-6 6160265 YP_001789048.1 CDS Lcho_0007 NC_010524.1 7594 8796 R KEGG: pna:Pnap_0166 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein complement(7594..8796) Leptothrix cholodnii SP-6 6160266 YP_001789049.1 CDS Lcho_0008 NC_010524.1 8901 10451 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: eba:ebA2890 hypothetical protein; peptidoglycan-binding domain-containing protein 8901..10451 Leptothrix cholodnii SP-6 6160267 YP_001789050.1 CDS Lcho_0009 NC_010524.1 10501 11118 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eba:ebA2889 hypothetical protein; hypothetical protein 10501..11118 Leptothrix cholodnii SP-6 6160268 YP_001789051.1 CDS Lcho_0010 NC_010524.1 11180 11866 R KEGG: pol:Bpro_2657 hypothetical protein; hypothetical protein complement(11180..11866) Leptothrix cholodnii SP-6 6160269 YP_001789052.1 CDS Lcho_0011 NC_010524.1 11932 12906 R PFAM: Mammalian cell entry related domain protein; KEGG: aav:Aave_1818 mammalian cell entry related domain protein; hypothetical protein complement(11932..12906) Leptothrix cholodnii SP-6 6160071 YP_001789053.1 CDS Lcho_0012 NC_010524.1 12912 13661 R KEGG: pol:Bpro_2659 ABC-type transport system ipermease component; ABC transporter permease complement(12912..13661) Leptothrix cholodnii SP-6 6160072 YP_001789054.1 CDS Lcho_0013 NC_010524.1 13710 14801 R PFAM: protein of unknown function UPF0118; KEGG: rfr:Rfer_2147 protein of unknown function UPF0118; hypothetical protein complement(13710..14801) Leptothrix cholodnii SP-6 6160073 YP_001789055.1 CDS Lcho_0014 NC_010524.1 14798 15178 R KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase complement(14798..15178) Leptothrix cholodnii SP-6 6160074 YP_001789056.1 CDS Lcho_0015 NC_010524.1 15175 16038 R PFAM: 2OG-Fe(II) oxygenase; KEGG: cvi:CV_0045 probable oxidoreductase iron/ascorbate family; 2OG-Fe(II) oxygenase complement(15175..16038) Leptothrix cholodnii SP-6 6160075 YP_001789057.1 CDS Lcho_0016 NC_010524.1 16419 19187 D PFAM: polysaccharide deacetylase; KEGG: ajs:Ajs_0773 polysaccharide deacetylase; polysaccharide deacetylase 16419..19187 Leptothrix cholodnii SP-6 6160076 YP_001789058.1 CDS Lcho_0017 NC_010524.1 19153 22902 D KEGG: ajs:Ajs_0772 tetratricopeptide TPR_2 repeat protein; hypothetical protein 19153..22902 Leptothrix cholodnii SP-6 6159935 YP_001789059.1 CDS Lcho_0018 NC_010524.1 22955 23473 D KEGG: rso:RSc2274 putative lipoprotein; putative lipoprotein 22955..23473 Leptothrix cholodnii SP-6 6159936 YP_001789060.1 CDS Lcho_0019 NC_010524.1 23470 24855 D KEGG: bxe:Bxe_A2972 putative transmembrane protein; putative transmembrane protein 23470..24855 Leptothrix cholodnii SP-6 6159937 YP_001789061.1 CDS Lcho_0020 NC_010524.1 24852 25925 D KEGG: abo:ABO_0894 hypothetical protein; hypothetical protein 24852..25925 Leptothrix cholodnii SP-6 6159938 YP_001789062.1 CDS Lcho_0021 NC_010524.1 25922 27445 D PFAM: glycosyl transferase group 1; KEGG: reh:H16_B2199 lipopolysaccharide N-acetylglucosaminyl transferase; group 1 glycosyl transferase 25922..27445 Leptothrix cholodnii SP-6 6159939 YP_001789063.1 CDS Lcho_0022 NC_010524.1 27524 28894 D KEGG: rme:Rmet_4161 putative transmembrane protein; putative transmembrane protein 27524..28894 Leptothrix cholodnii SP-6 6159940 YP_001789064.1 CDS Lcho_0023 NC_010524.1 28902 29813 D PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: rso:RS01781 hypothetical protein; coenzyme F420-dependent NADP oxidoreductase 28902..29813 Leptothrix cholodnii SP-6 6159813 YP_001789065.1 CDS Lcho_0024 NC_010524.1 29798 30430 R KEGG: mpt:Mpe_A0049 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(29798..30430) Leptothrix cholodnii SP-6 6159814 YP_001789066.1 CDS Lcho_0025 NC_010524.1 30457 31902 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rxy:Rxyl_0136 transcriptional regulator, GntR family; transcriptional regulator complement(30457..31902) Leptothrix cholodnii SP-6 6159815 YP_001789067.1 CDS Lcho_0026 NC_010524.1 31970 32434 D PFAM: OsmC family protein; KEGG: rfr:Rfer_3388 OsmC-like protein; OsmC family protein 31970..32434 Leptothrix cholodnii SP-6 6159816 YP_001789068.1 CDS Lcho_0027 NC_010524.1 32460 33089 D PFAM: Negative transcriptional regulator; KEGG: rfr:Rfer_3387 negative transcriptional regulator; FMN-binding negative transcriptional regulator 32460..33089 Leptothrix cholodnii SP-6 6159817 YP_001789069.1 CDS Lcho_0028 NC_010524.1 33103 33546 D PFAM: GCN5-related N-acetyltransferase; KEGG: bmu:Bmul_4135 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 33103..33546 Leptothrix cholodnii SP-6 6159818 YP_001789070.1 CDS Lcho_0029 NC_010524.1 33574 33855 R PFAM: protein of unknown function DUF427; KEGG: mpt:Mpe_A1381 hypothetical protein; hypothetical protein complement(33574..33855) Leptothrix cholodnii SP-6 6159825 YP_001789071.1 CDS Lcho_0030 NC_010524.1 33897 35243 R PFAM: protein of unknown function DUF323; KEGG: mpt:Mpe_A1379 hypothetical protein; hypothetical protein complement(33897..35243) Leptothrix cholodnii SP-6 6159826 YP_001789072.1 CDS Lcho_0031 NC_010524.1 35295 36716 R KEGG: mpt:Mpe_A1056 periplasmic protein/biopolymer transport; hypothetical protein complement(35295..36716) Leptothrix cholodnii SP-6 6159827 YP_001789073.1 CDS Lcho_0032 NC_010524.1 36993 37784 D TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: mpt:Mpe_A3345 putative septum site-determining protein; septum site-determining protein MinC 36993..37784 Leptothrix cholodnii SP-6 6159828 YP_001789074.1 CDS Lcho_0033 NC_010524.1 37836 38654 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ajs:Ajs_0066 septum site-determining protein MinD; septum site-determining protein MinD 37836..38654 Leptothrix cholodnii SP-6 6159829 YP_001789075.1 CDS Lcho_0034 NC_010524.1 38659 38922 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 38659..38922 Leptothrix cholodnii SP-6 6159830 YP_001789076.1 CDS Lcho_0035 NC_010524.1 39093 39410 D hypothetical protein 39093..39410 Leptothrix cholodnii SP-6 6160129 YP_001789077.1 CDS Lcho_0036 NC_010524.1 39642 40580 D PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_2353 pyruvate carboxyltransferase; pyruvate carboxyltransferase 39642..40580 Leptothrix cholodnii SP-6 6160130 YP_001789078.1 CDS Lcho_0037 NC_010524.1 40584 41813 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_2352 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 40584..41813 Leptothrix cholodnii SP-6 6160131 YP_001789079.1 CDS Lcho_0038 NC_010524.1 41903 42886 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2351 uncharacterized protein UPF0065; hypothetical protein 41903..42886 Leptothrix cholodnii SP-6 6160132 YP_001789080.1 CDS Lcho_0040 NC_010524.1 44116 45387 R KEGG: pna:Pnap_0797 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(44116..45387) Leptothrix cholodnii SP-6 6160134 YP_001789081.1 CDS Lcho_0041 NC_010524.1 45695 46909 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(45695..46909) Leptothrix cholodnii SP-6 6160065 YP_001789082.1 CDS Lcho_0042 NC_010524.1 47049 47597 R PFAM: Lipocalin family protein; KEGG: tbd:Tbd_1196 outer membrane lipoprotein; lipocalin family protein complement(47049..47597) Leptothrix cholodnii SP-6 6160066 YP_001789083.1 CDS Lcho_0043 NC_010524.1 47734 49365 D PFAM: transcriptional regulator domain protein; KEGG: jan:Jann_3721 transcriptional regulatory protein-like; transcriptional regulator domain-containing protein 47734..49365 Leptothrix cholodnii SP-6 6160067 YP_001789084.1 CDS Lcho_0044 NC_010524.1 49496 49888 D hypothetical protein 49496..49888 Leptothrix cholodnii SP-6 6160068 YP_001789085.1 CDS Lcho_0045 NC_010524.1 49890 51038 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: rpb:RPB_0891 adenylate/guanylate cyclase; adenylate/guanylate cyclase complement(49890..51038) Leptothrix cholodnii SP-6 6160069 YP_001789086.1 CDS Lcho_0046 NC_010524.1 51035 51412 R PFAM: response regulator receiver; KEGG: xau:Xaut_3859 response regulator receiver protein; response regulator receiver protein complement(51035..51412) Leptothrix cholodnii SP-6 6160070 YP_001789087.1 CDS Lcho_0047 NC_010524.1 51409 52935 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cau:Caur_0402 histidine kinase; histidine kinase complement(51409..52935) Leptothrix cholodnii SP-6 6159819 YP_001789088.1 CDS Lcho_0048 NC_010524.1 52932 53558 R PFAM: electron transport protein SCO1/SenC; KEGG: scl:sce2899 SCO1/SenC family lipoprotein; electron transport protein SCO1/SenC complement(52932..53558) Leptothrix cholodnii SP-6 6159820 YP_001789089.1 CDS Lcho_0049 NC_010524.1 53567 54580 R KEGG: gdi:GDI2643 putative nitrate transport protein NrtA; putative nitrate transport protein NrtA complement(53567..54580) Leptothrix cholodnii SP-6 6159821 YP_001789090.1 CDS Lcho_0050 NC_010524.1 54594 55736 R PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro10186 hypothetical protein; alpha/beta hydrolase fold protein complement(54594..55736) Leptothrix cholodnii SP-6 6159822 YP_001789091.1 CDS Lcho_0051 NC_010524.1 55774 56934 R KEGG: sus:Acid_4622 homoserine O-acetyltransferase; homoserine O-acetyltransferase complement(55774..56934) Leptothrix cholodnii SP-6 6159823 YP_001789092.1 CDS Lcho_0052 NC_010524.1 57209 57577 D PFAM: globin; KEGG: ade:Adeh_1754 globin like protein; globin 57209..57577 Leptothrix cholodnii SP-6 6159824 YP_001789093.1 CDS Lcho_0053 NC_010524.1 57758 58564 D KEGG: scl:sce8365 hypothetical protein; hypothetical protein 57758..58564 Leptothrix cholodnii SP-6 6160000 YP_001789094.1 CDS Lcho_0054 NC_010524.1 58623 59270 R PFAM: ATP-binding region ATPase domain protein; KEGG: rru:Rru_A3213 PAS/PAC sensor signal transduction histidine kinase; histidine kinase complement(58623..59270) Leptothrix cholodnii SP-6 6160001 YP_001789095.1 CDS Lcho_0055 NC_010524.1 59309 61462 R PFAM: GAF domain protein; histidine kinase HAMP region domain protein; KEGG: bja:blr2862 two-component hybrid sensor and regulator; sensor protein complement(59309..61462) Leptothrix cholodnii SP-6 6160002 YP_001789096.1 CDS Lcho_0056 NC_010524.1 61499 61963 R KEGG: rle:pRL110111 hypothetical protein; hypothetical protein complement(61499..61963) Leptothrix cholodnii SP-6 6160003 YP_001789097.1 CDS Lcho_0057 NC_010524.1 62156 62470 D KEGG: mpt:Mpe_A3139 hypothetical protein; hypothetical protein 62156..62470 Leptothrix cholodnii SP-6 6160004 YP_001789098.1 CDS Lcho_0058 NC_010524.1 62524 62937 D KEGG: mpt:Mpe_A2525 hypothetical protein; hypothetical protein 62524..62937 Leptothrix cholodnii SP-6 6160005 YP_001789099.1 CDS Lcho_0059 NC_010524.1 63036 64025 R PFAM: metallophosphoesterase; KEGG: rfr:Rfer_3683 metallophosphoesterase; metallophosphoesterase complement(63036..64025) Leptothrix cholodnii SP-6 6160283 YP_001789100.1 CDS Lcho_0060 NC_010524.1 64025 65026 R PFAM: luciferase family protein; KEGG: bmu:Bmul_2136 luciferase family protein; luciferase family protein complement(64025..65026) Leptothrix cholodnii SP-6 6160284 YP_001789101.1 CDS Lcho_0061 NC_010524.1 65087 66136 R KEGG: mgm:Mmc1_3719 hypothetical protein; thioredoxin-like protein complement(65087..66136) Leptothrix cholodnii SP-6 6160285 YP_001789102.1 CDS Lcho_0062 NC_010524.1 66202 66423 R PFAM: SlyX family protein; KEGG: bbr:BB1266 hypothetical protein; SlyX family protein complement(66202..66423) Leptothrix cholodnii SP-6 6160286 YP_001789103.1 CDS Lcho_0063 NC_010524.1 66471 67256 R KEGG: bja:bll2732 putative cytochrome c; putative cytochrome c complement(66471..67256) Leptothrix cholodnii SP-6 6160287 YP_001789104.1 CDS Lcho_0064 NC_010524.1 67253 67573 R PFAM: Sulphur oxidation protein SoxZ; KEGG: bja:bll2733 probable sulfur oxidation protein; sulfur oxidation protein SoxZ complement(67253..67573) Leptothrix cholodnii SP-6 6160288 YP_001789105.1 CDS Lcho_0065 NC_010524.1 67600 68076 R with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY complement(67600..68076) Leptothrix cholodnii SP-6 6160172 YP_001789106.1 CDS Lcho_0066 NC_010524.1 68084 68527 R KEGG: bbt:BBta_2764 putative cytochrome c, putative SoxX protein; putative cytochrome c SoxX protein complement(68084..68527) Leptothrix cholodnii SP-6 6160173 YP_001789107.1 CDS Lcho_0067 NC_010524.1 68548 70818 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll2736 putative aldehyde dehydrogenase protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein complement(68548..70818) Leptothrix cholodnii SP-6 6160174 YP_001789108.1 CDS Lcho_0068 NC_010524.1 70815 71318 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: smd:Smed_6324 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster-binding domain-containing protein complement(70815..71318) Leptothrix cholodnii SP-6 6160175 YP_001789109.1 CDS Lcho_0069 NC_010524.1 72214 74025 D PFAM: multicopper oxidase type 2; KEGG: mgr:MGG_08046 hypothetical protein; bilirubin oxidase 72214..74025 Leptothrix cholodnii SP-6 6160176 YP_001789110.1 CDS Lcho_0070 NC_010524.1 74058 74654 D involved in biogenesis of respiratory and photosynthetic systems; KEGG: ppf:Pput_2533 electron transport protein SCO1/SenC; hypothetical protein 74058..74654 Leptothrix cholodnii SP-6 6160177 YP_001789111.1 CDS Lcho_0071 NC_010524.1 74662 75261 R PFAM: Chromate transporter; KEGG: rfr:Rfer_2757 chromate transporter; chromate transporter complement(74662..75261) Leptothrix cholodnii SP-6 6160295 YP_001789112.1 CDS Lcho_0072 NC_010524.1 75258 75959 R PFAM: Chromate transporter; KEGG: vei:Veis_3786 chromate transporter; chromate transporter complement(75258..75959) Leptothrix cholodnii SP-6 6160296 YP_001789113.1 CDS Lcho_0073 NC_010524.1 76003 76926 R PFAM: Acyl transferase; KEGG: dac:Daci_1762 (acyl-carrier protein) S-malonyltransferase; acyl transferase complement(76003..76926) Leptothrix cholodnii SP-6 6160297 YP_001789114.1 CDS Lcho_0074 NC_010524.1 76985 77872 R KEGG: mpt:Mpe_A2891 triphosphoribosyl-dephospho-CoA synthase; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase MdcB; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase MdcB complement(76985..77872) Leptothrix cholodnii SP-6 6160298 YP_001789115.1 CDS Lcho_0075 NC_010524.1 77869 78630 R KEGG: dac:Daci_1764 holo-ACP synthase, malonate decarboxylase-specific; malonate decarboxylase-specific holo-ACP synthase complement(77869..78630) Leptothrix cholodnii SP-6 6160299 YP_001789116.1 CDS Lcho_0076 NC_010524.1 78637 79338 R TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: dac:Daci_1765 malonate decarboxylase, gamma subunit; malonate decarboxylase subunit gamma complement(78637..79338) Leptothrix cholodnii SP-6 6160300 YP_001789117.1 CDS Lcho_0077 NC_010524.1 79341 80243 R The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta complement(79341..80243) Leptothrix cholodnii SP-6 6159725 YP_001789118.1 CDS Lcho_0078 NC_010524.1 80240 80578 R TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: dac:Daci_1767 malonate decarboxylase acyl carrier protein; malonate decarboxylase acyl carrier protein complement(80240..80578) Leptothrix cholodnii SP-6 6159726 YP_001789119.1 CDS Lcho_0079 NC_010524.1 80583 82283 R TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: mpt:Mpe_A2895 alpha subunit of malonate decarboxylase; malonate decarboxylase subunit alpha complement(80583..82283) Leptothrix cholodnii SP-6 6159727 YP_001789120.1 CDS Lcho_0080 NC_010524.1 82296 83327 R PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A2898 hypothetical protein; hypothetical protein complement(82296..83327) Leptothrix cholodnii SP-6 6159728 YP_001789121.1 CDS Lcho_0081 NC_010524.1 83480 84202 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A2899 putative GntR-family transcription regulator; GntR family transcriptional regulator 83480..84202 Leptothrix cholodnii SP-6 6159729 YP_001789122.1 CDS Lcho_0082 NC_010524.1 84204 85490 D PFAM: aminotransferase class I and II; KEGG: pol:Bpro_1410 aminotransferase; aminotransferase 84204..85490 Leptothrix cholodnii SP-6 6159730 YP_001789123.1 CDS Lcho_0083 NC_010524.1 85554 86225 R PFAM: DSBA oxidoreductase; KEGG: mpt:Mpe_A0744 2-hydroxychromene-2-carboxylate isomerase family protein; DSBA oxidoreductase complement(85554..86225) Leptothrix cholodnii SP-6 6160349 YP_001789124.1 CDS Lcho_0084 NC_010524.1 86507 87097 D KEGG: aav:Aave_3831 restriction endonuclease; restriction endonuclease 86507..87097 Leptothrix cholodnii SP-6 6160350 YP_001789125.1 CDS Lcho_0085 NC_010524.1 87210 88604 R SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: pfo:Pfl_3676 serine/threonine protein kinase; serine/threonine protein kinase complement(87210..88604) Leptothrix cholodnii SP-6 6160351 YP_001789126.1 CDS Lcho_0086 NC_010524.1 88612 89895 R KEGG: pol:Bpro_0661 D-serine deaminase; D-serine deaminase complement(88612..89895) Leptothrix cholodnii SP-6 6160352 YP_001789127.1 CDS Lcho_0087 NC_010524.1 90047 92119 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pna:Pnap_0620 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 90047..92119 Leptothrix cholodnii SP-6 6160353 YP_001789128.1 CDS Lcho_0088 NC_010524.1 92178 92639 D PFAM: Rhodanese domain protein; KEGG: mgm:Mmc1_2517 rhodanese domain protein; rhodanese domain-containing protein 92178..92639 Leptothrix cholodnii SP-6 6160354 YP_001789129.1 CDS Lcho_0089 NC_010524.1 92887 94695 D KEGG: pna:Pnap_0619 putative flavoprotein involved in K+ transport; putative potassium transport flavoprotein 92887..94695 Leptothrix cholodnii SP-6 6161015 YP_001789130.1 CDS Lcho_0090 NC_010524.1 94738 95370 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pol:Bpro_1051 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein complement(94738..95370) Leptothrix cholodnii SP-6 6161016 YP_001789131.1 CDS Lcho_0091 NC_010524.1 95507 96154 D PFAM: DTW domain containing protein; KEGG: mms:mma_1862 hypothetical protein; DTW domain-containing protein 95507..96154 Leptothrix cholodnii SP-6 6161017 YP_001789132.1 CDS Lcho_0092 NC_010524.1 96129 96875 R PFAM: dienelactone hydrolase; KEGG: ter:Tery_0392 carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(96129..96875) Leptothrix cholodnii SP-6 6161018 YP_001789133.1 CDS Lcho_0093 NC_010524.1 96911 97954 R PFAM: aldo/keto reductase; KEGG: bmu:Bmul_3074 aldo/keto reductase; aldo/keto reductase complement(96911..97954) Leptothrix cholodnii SP-6 6161019 YP_001789134.1 CDS Lcho_0094 NC_010524.1 98264 98836 D PFAM: protein of unknown function UPF0016; KEGG: mpt:Mpe_A0366 putative transmembrane protein; hypothetical protein 98264..98836 Leptothrix cholodnii SP-6 6161020 YP_001789135.1 CDS Lcho_0095 NC_010524.1 98859 100721 R TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: mpt:Mpe_A0560 glucosamine--fructose-6-phosphate aminotransferase (isomerizing); glucosamine--fructose-6-phosphate aminotransferase complement(98859..100721) Leptothrix cholodnii SP-6 6161763 YP_001789136.1 CDS Lcho_0096 NC_010524.1 100889 101395 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pol:Bpro_0674 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 100889..101395 Leptothrix cholodnii SP-6 6161764 YP_001789137.1 CDS Lcho_0097 NC_010524.1 101370 101852 R PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(101370..101852) Leptothrix cholodnii SP-6 6161765 YP_001789138.1 CDS Lcho_0098 NC_010524.1 101859 103268 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: mpt:Mpe_A0557 UDP-N-acetylglucosamine diphosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(101859..103268) Leptothrix cholodnii SP-6 6161766 YP_001789139.1 CDS Lcho_0099 NC_010524.1 103357 104235 D KEGG: mpt:Mpe_A0556 putative lipoprotein; putative lipoprotein 103357..104235 Leptothrix cholodnii SP-6 6161767 YP_001789140.1 CDS Lcho_0100 NC_010524.1 104204 104854 R KEGG: mpt:Mpe_A0555 putative lipoprotein; putative lipoprotein complement(104204..104854) Leptothrix cholodnii SP-6 6161768 YP_001789141.1 CDS Lcho_0101 NC_010524.1 104905 105885 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(104905..105885) Leptothrix cholodnii SP-6 6163516 YP_001789142.1 CDS Lcho_0102 NC_010524.1 105882 106280 R KEGG: reh:H16_A0259 dihydroneopterin aldolase; dihydroneopterin aldolase complement(105882..106280) Leptothrix cholodnii SP-6 6163517 YP_001789143.1 CDS Lcho_0103 NC_010524.1 106331 107143 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A0552 putative oxidoreductase protein; short-chain dehydrogenase/reductase SDR complement(106331..107143) Leptothrix cholodnii SP-6 6163518 YP_001789144.1 CDS Lcho_0104 NC_010524.1 107261 108475 D PFAM: protein of unknown function DUF185; KEGG: mpt:Mpe_A0551 hypothetical protein; hypothetical protein 107261..108475 Leptothrix cholodnii SP-6 6163519 YP_001789145.1 CDS Lcho_0105 NC_010524.1 108525 108716 D KEGG: ajs:Ajs_0499 hypothetical protein; hypothetical protein 108525..108716 Leptothrix cholodnii SP-6 6163520 YP_001789146.1 CDS Lcho_0106 NC_010524.1 108666 109925 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: mpt:Mpe_A3298 tRNA nucleotidyltransferase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(108666..109925) Leptothrix cholodnii SP-6 6163521 YP_001789147.1 CDS Lcho_0107 NC_010524.1 109970 110695 R PFAM: Glutathione S-transferase domain; KEGG: aav:Aave_4206 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(109970..110695) Leptothrix cholodnii SP-6 6162183 YP_001789148.1 CDS Lcho_0108 NC_010524.1 110723 112120 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_2004 two component, sigma-54 specific, transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator complement(110723..112120) Leptothrix cholodnii SP-6 6162184 YP_001789149.1 CDS Lcho_0109 NC_010524.1 112164 113549 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2417 sensor histidine kinase; histidine kinase complement(112164..113549) Leptothrix cholodnii SP-6 6162185 YP_001789150.1 CDS Lcho_0110 NC_010524.1 113673 114638 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: mpt:Mpe_A3296 nucleoside-diphosphate-sugar epimerase; NADH dehydrogenase complement(113673..114638) Leptothrix cholodnii SP-6 6162186 YP_001789151.1 CDS Lcho_0111 NC_010524.1 114704 116776 R PFAM: Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A3295 putative transglycosylase; lytic transglycosylase catalytic subunit complement(114704..116776) Leptothrix cholodnii SP-6 6162187 YP_001789152.1 CDS Lcho_0112 NC_010524.1 116889 117851 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A3294 LysR family regulatory protein; LysR family transcriptional regulator complement(116889..117851) Leptothrix cholodnii SP-6 6162188 YP_001789153.1 CDS Lcho_0113 NC_010524.1 117947 118411 D hypothetical protein 117947..118411 Leptothrix cholodnii SP-6 6161882 YP_001789154.1 CDS Lcho_0114 NC_010524.1 118240 118644 R PFAM: TfoX domain protein; KEGG: afw:Anae109_0262 TfoX domain protein; TfoX domain-containing protein complement(118240..118644) Leptothrix cholodnii SP-6 6161883 YP_001789155.1 CDS Lcho_0115 NC_010524.1 118764 119354 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mpt:Mpe_A3291 hypothetical protein; 5-formyltetrahydrofolate cyclo-ligase 118764..119354 Leptothrix cholodnii SP-6 6161884 YP_001789156.1 CDS Lcho_0116 NC_010524.1 119438 120034 R PFAM: OmpW family protein; KEGG: dac:Daci_4836 OmpW family protein; OmpW family protein complement(119438..120034) Leptothrix cholodnii SP-6 6161885 YP_001789157.1 CDS Lcho_0117 NC_010524.1 120284 121123 R KEGG: aav:Aave_4058 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(120284..121123) Leptothrix cholodnii SP-6 6161886 YP_001789158.1 CDS Lcho_0118 NC_010524.1 121159 122067 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: mpt:Mpe_A3287 putative hemolysin; ribosomal RNA methyltransferase RrmJ/FtsJ complement(121159..122067) Leptothrix cholodnii SP-6 6161887 YP_001789159.1 CDS Lcho_0119 NC_010524.1 122067 123500 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(122067..123500) Leptothrix cholodnii SP-6 6162777 YP_001789160.1 CDS Lcho_0120 NC_010524.1 123915 124490 D PFAM: intradiol ring-cleavage dioxygenase; KEGG: pol:Bpro_3458 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase 123915..124490 Leptothrix cholodnii SP-6 6162778 YP_001789161.1 CDS Lcho_0121 NC_010524.1 124582 125424 D KEGG: mpt:Mpe_A0034 hypothetical protein; hypothetical protein 124582..125424 Leptothrix cholodnii SP-6 6162779 YP_001789162.1 CDS purT NC_010524.1 125496 126713 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 125496..126713 Leptothrix cholodnii SP-6 6162780 YP_001789163.1 CDS Lcho_0123 NC_010524.1 126766 126960 D hypothetical protein 126766..126960 Leptothrix cholodnii SP-6 6162781 YP_001789164.1 CDS Lcho_0124 NC_010524.1 126976 127782 D KEGG: bpt:Bpet0636 hypothetical protein; hypothetical protein 126976..127782 Leptothrix cholodnii SP-6 6162782 YP_001789165.1 CDS Lcho_0125 NC_010524.1 127798 128880 R KEGG: rfr:Rfer_4021 hypothetical protein; hypothetical protein complement(127798..128880) Leptothrix cholodnii SP-6 6162706 YP_001789166.1 CDS Lcho_0126 NC_010524.1 128926 130107 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(128926..130107) Leptothrix cholodnii SP-6 6162707 YP_001789167.1 CDS Lcho_0127 NC_010524.1 130351 131220 D PFAM: lipid A biosynthesis acyltransferase; KEGG: mpt:Mpe_A3251 putative acyltransferase; lipid A biosynthesis acyltransferase 130351..131220 Leptothrix cholodnii SP-6 6162708 YP_001789168.1 CDS Lcho_0128 NC_010524.1 131217 132101 D PFAM: lipid A biosynthesis acyltransferase; KEGG: mpt:Mpe_A3250 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis acyltransferase 131217..132101 Leptothrix cholodnii SP-6 6162709 YP_001789169.1 CDS Lcho_0129 NC_010524.1 132156 133049 D PFAM: diaminopimelate epimerase; KEGG: pol:Bpro_1058 diaminopimelate epimerase; diaminopimelate epimerase 132156..133049 Leptothrix cholodnii SP-6 6162710 YP_001789170.1 CDS Lcho_0130 NC_010524.1 133159 133839 D PFAM: protein of unknown function DUF484; KEGG: mpt:Mpe_A3244 hypothetical protein; hypothetical protein 133159..133839 Leptothrix cholodnii SP-6 6162711 YP_001789171.1 CDS Lcho_0131 NC_010524.1 133836 134774 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mpt:Mpe_A3243 putative site specific integrase/recombinase protein; integrase family protein 133836..134774 Leptothrix cholodnii SP-6 6161259 YP_001789172.1 CDS Lcho_0132 NC_010524.1 134806 136296 R TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bpd:BURPS668_0884 xylulokinase; xylulokinase complement(134806..136296) Leptothrix cholodnii SP-6 6161260 YP_001789173.1 CDS Lcho_0133 NC_010524.1 136350 137297 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vei:Veis_3165 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(136350..137297) Leptothrix cholodnii SP-6 6161261 YP_001789174.1 CDS Lcho_0134 NC_010524.1 137319 138716 R PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vei:Veis_3167 mannitol dehydrogenase, C-terminal domain; mannitol dehydrogenase domain-containing protein complement(137319..138716) Leptothrix cholodnii SP-6 6161262 YP_001789175.1 CDS Lcho_0135 NC_010524.1 138751 139803 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vei:Veis_3168 ABC transporter related; ABC transporter-like protein complement(138751..139803) Leptothrix cholodnii SP-6 6161263 YP_001789176.1 CDS Lcho_0136 NC_010524.1 139830 140660 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3169 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(139830..140660) Leptothrix cholodnii SP-6 6161264 YP_001789177.1 CDS Lcho_0137 NC_010524.1 140669 141541 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3170 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(140669..141541) Leptothrix cholodnii SP-6 6162938 YP_001789178.1 CDS Lcho_0138 NC_010524.1 141654 142958 R PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_3171 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(141654..142958) Leptothrix cholodnii SP-6 6162939 YP_001789179.1 CDS Lcho_0139 NC_010524.1 143174 144367 D SMART: PUA domain containing protein; KEGG: mpt:Mpe_A3242 hypothetical protein; PUA domain-containing protein 143174..144367 Leptothrix cholodnii SP-6 6162940 YP_001789180.1 CDS Lcho_0140 NC_010524.1 144486 144839 D KEGG: dac:Daci_1738 hypothetical protein; hypothetical protein 144486..144839 Leptothrix cholodnii SP-6 6162941 YP_001789181.1 CDS Lcho_0141 NC_010524.1 144947 146185 D PFAM: outer membrane efflux protein; KEGG: dac:Daci_1739 outer membrane efflux protein; outer membrane efflux protein 144947..146185 Leptothrix cholodnii SP-6 6162942 YP_001789182.1 CDS Lcho_0142 NC_010524.1 146182 146805 D KEGG: dac:Daci_1740 hypothetical protein; hypothetical protein 146182..146805 Leptothrix cholodnii SP-6 6162943 YP_001789183.1 CDS Lcho_0143 NC_010524.1 146802 147908 D KEGG: dac:Daci_1741 conserved hypothetical secreted protein; hypothetical protein 146802..147908 Leptothrix cholodnii SP-6 6163744 YP_001789184.1 CDS Lcho_0144 NC_010524.1 147928 151071 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dac:Daci_1742 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 147928..151071 Leptothrix cholodnii SP-6 6163745 YP_001789185.1 CDS Lcho_0145 NC_010524.1 151151 151522 D KEGG: dac:Daci_1743 hypothetical protein; hypothetical protein 151151..151522 Leptothrix cholodnii SP-6 6163746 YP_001789186.1 CDS Lcho_0146 NC_010524.1 151677 152081 D KEGG: pna:Pnap_1251 hypothetical protein; hypothetical protein 151677..152081 Leptothrix cholodnii SP-6 6163747 YP_001789187.1 CDS Lcho_0147 NC_010524.1 152223 152666 D KEGG: ajs:Ajs_1464 hypothetical protein; hypothetical protein 152223..152666 Leptothrix cholodnii SP-6 6163748 YP_001789188.1 CDS Lcho_0148 NC_010524.1 152768 154960 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 152768..154960 Leptothrix cholodnii SP-6 6163749 YP_001789189.1 CDS Lcho_0149 NC_010524.1 154994 155707 R PFAM: Ankyrin; KEGG: pol:Bpro_4103 ankyrin; ankyrin complement(154994..155707) Leptothrix cholodnii SP-6 6163205 YP_001789190.1 CDS Lcho_0150 NC_010524.1 155763 156281 R PFAM: protein of unknown function DUF336; KEGG: dac:Daci_1203 protein of unknown function DUF336; hypothetical protein complement(155763..156281) Leptothrix cholodnii SP-6 6163206 YP_001789191.1 CDS Lcho_0151 NC_010524.1 156582 156905 D PFAM: flagellar transcriptional activator; KEGG: mpt:Mpe_A2869 transcriptional regulator; flagellar transcriptional activator 156582..156905 Leptothrix cholodnii SP-6 6163207 YP_001789192.1 CDS Lcho_0152 NC_010524.1 156940 157476 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 156940..157476 Leptothrix cholodnii SP-6 6163208 YP_001789193.1 CDS Lcho_0153 NC_010524.1 157652 158707 D KEGG: aav:Aave_0260 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 157652..158707 Leptothrix cholodnii SP-6 6163209 YP_001789194.1 CDS Lcho_0154 NC_010524.1 159054 160397 D PFAM: flavin-containing monooxygenase FMO; KEGG: mlo:mlr7328 hypothetical protein; flavin-containing monooxygenase FMO 159054..160397 Leptothrix cholodnii SP-6 6163210 YP_001789195.1 CDS Lcho_0155 NC_010524.1 160551 162923 R PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: pmy:Pmen_3460 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) complement(160551..162923) Leptothrix cholodnii SP-6 6162575 YP_001789196.1 CDS Lcho_0156 NC_010524.1 162923 163261 R PFAM: nitrogen regulatory protein P-II; KEGG: mpt:Mpe_A0171 nitrogen regulatory protein P-II-2; nitrogen regulatory protein P-II complement(162923..163261) Leptothrix cholodnii SP-6 6162576 YP_001789197.1 CDS Lcho_0157 NC_010524.1 163308 164651 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mfa:Mfla_0434 ammonium transporter; ammonium transporter complement(163308..164651) Leptothrix cholodnii SP-6 6162577 YP_001789198.1 CDS Lcho_0158 NC_010524.1 164806 166515 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pol:Bpro_5295 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(164806..166515) Leptothrix cholodnii SP-6 6162578 YP_001789199.1 CDS Lcho_0159 NC_010524.1 166535 167347 R PFAM: N-formylglutamate amidohydrolase; KEGG: azo:azo3002 conserved hypothetical formylglutamte amindohyrolase; N-formylglutamate amidohydrolase complement(166535..167347) Leptothrix cholodnii SP-6 6162579 YP_001789200.1 CDS Lcho_0160 NC_010524.1 167344 168375 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2188 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(167344..168375) Leptothrix cholodnii SP-6 6162580 YP_001789201.1 CDS Lcho_0161 NC_010524.1 168525 169709 D PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_B2189 D-amino-acid dehydrogenase; FAD dependent oxidoreductase 168525..169709 Leptothrix cholodnii SP-6 6160405 YP_001789202.1 CDS Lcho_0162 NC_010524.1 169726 170487 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: azo:azo3005 probable electron transfer flavoprotein, beta subunit; electron transfer flavoprotein alpha/beta-subunit 169726..170487 Leptothrix cholodnii SP-6 6160406 YP_001789203.1 CDS Lcho_0163 NC_010524.1 170499 171452 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: azo:azo3006 probable electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 170499..171452 Leptothrix cholodnii SP-6 6160407 YP_001789204.1 CDS Lcho_0164 NC_010524.1 171449 172054 D PFAM: protein of unknown function DUF886; KEGG: azo:azo3007 hypothetical protein; hypothetical protein 171449..172054 Leptothrix cholodnii SP-6 6160408 YP_001789205.1 CDS Lcho_0165 NC_010524.1 172064 172666 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: azo:azo3009 putative DNA binding helix-turn helix protein; XRE family transcriptional regulator complement(172064..172666) Leptothrix cholodnii SP-6 6160409 YP_001789206.1 CDS Lcho_0166 NC_010524.1 172841 174235 D TIGRFAM: glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region; KEGG: reh:H16_B2191 glutamine synthetase; glutamine synthetase 172841..174235 Leptothrix cholodnii SP-6 6160410 YP_001789207.1 CDS Lcho_0167 NC_010524.1 174247 175155 D PFAM: glutamine amidotransferase class-II; KEGG: reh:H16_B2192 glutamine amidotransferases class-II; glutamine amidotransferase 174247..175155 Leptothrix cholodnii SP-6 6160652 YP_001789208.1 CDS Lcho_0168 NC_010524.1 175143 175832 D PFAM: glutamate synthase alpha subunit domain protein; KEGG: mfa:Mfla_0458 glutamate synthase, alpha subunit-like protein; glutamate synthase subunit alpha 175143..175832 Leptothrix cholodnii SP-6 6160653 YP_001789209.1 CDS Lcho_0169 NC_010524.1 175834 177204 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: rxy:Rxyl_2501 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 175834..177204 Leptothrix cholodnii SP-6 6160654 YP_001789210.1 CDS Lcho_0170 NC_010524.1 177216 177809 D KEGG: xau:Xaut_3182 hypothetical protein; hypothetical protein 177216..177809 Leptothrix cholodnii SP-6 6160655 YP_001789211.1 CDS Lcho_0171 NC_010524.1 177806 178756 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: xau:Xaut_3181 ferredoxin; ferredoxin 177806..178756 Leptothrix cholodnii SP-6 6160656 YP_001789212.1 CDS Lcho_0172 NC_010524.1 178783 179862 D KEGG: xau:Xaut_3180 conserved hypothetical cytosolic protein; hypothetical protein 178783..179862 Leptothrix cholodnii SP-6 6160657 YP_001789213.1 CDS Lcho_0173 NC_010524.1 179958 181088 D PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: pmy:Pmen_3456 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 179958..181088 Leptothrix cholodnii SP-6 6160754 YP_001789214.1 CDS purU NC_010524.1 181093 181956 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 181093..181956 Leptothrix cholodnii SP-6 6160755 YP_001789215.1 CDS Lcho_0175 NC_010524.1 181966 182871 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: nmu:Nmul_A0357 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 181966..182871 Leptothrix cholodnii SP-6 6160756 YP_001789216.1 CDS Lcho_0176 NC_010524.1 182985 185315 D KEGG: rfr:Rfer_2918 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein 182985..185315 Leptothrix cholodnii SP-6 6160757 YP_001789217.1 CDS Lcho_0177 NC_010524.1 185343 185708 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: bxe:Bxe_A2213 putative ferredoxin subunit of nitrate/nitrite reductase (NADPH); nitrite reductase (NAD(P)H) small subunit complement(185343..185708) Leptothrix cholodnii SP-6 6160758 YP_001789218.1 CDS Lcho_0178 NC_010524.1 185723 188257 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSp1222 probable nitrite reductase NADPH (large subunit) oxidoreductase protein; nitrite reductase (NAD(P)H) large subunit complement(185723..188257) Leptothrix cholodnii SP-6 6160759 YP_001789219.1 CDS Lcho_0179 NC_010524.1 188903 189370 D PFAM: cyclic nucleotide-binding; KEGG: mpt:Mpe_A3813 cAMP-dependent protein kinase - catabolite gene activator and regulatory subunit; cyclic nucleotide-binding protein 188903..189370 Leptothrix cholodnii SP-6 6161185 YP_001789220.1 CDS Lcho_0180 NC_010524.1 189530 189931 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: bxe:Bxe_B2429 putative pterin-4-alpha-carbinolamine dehydratase (PcbD); transcriptional coactivator/pterin dehydratase 189530..189931 Leptothrix cholodnii SP-6 6161186 YP_001789221.1 CDS Lcho_0181 NC_010524.1 189947 191944 R PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: mpt:Mpe_A3810 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger complement(189947..191944) Leptothrix cholodnii SP-6 6161187 YP_001789222.1 CDS Lcho_0182 NC_010524.1 191995 192987 D KEGG: mpt:Mpe_A3809 arabinose-5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 191995..192987 Leptothrix cholodnii SP-6 6161188 YP_001789223.1 CDS Lcho_0183 NC_010524.1 192990 193601 D TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: mpt:Mpe_A3808 3-deoxy-manno-octulosonate-8-phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 192990..193601 Leptothrix cholodnii SP-6 6161189 YP_001789224.1 CDS Lcho_0184 NC_010524.1 193625 194320 D PFAM: protein of unknown function DUF1239; KEGG: mpt:Mpe_A3807 putative transmembrane protein; hypothetical protein 193625..194320 Leptothrix cholodnii SP-6 6161190 YP_001789225.1 CDS Lcho_0185 NC_010524.1 194353 195156 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpt:Mpe_A3806 short chain dehydrogenase; short chain dehydrogenase 194353..195156 Leptothrix cholodnii SP-6 6161425 YP_001789226.1 CDS Lcho_0186 NC_010524.1 195272 195745 R PFAM: RNP-1 like RNA-binding protein; KEGG: mpt:Mpe_A3805 RNA-binding region RNP-1; RNP-1 like RNA-binding protein complement(195272..195745) Leptothrix cholodnii SP-6 6161426 YP_001789227.1 CDS Lcho_0187 NC_010524.1 196034 196675 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: mpt:Mpe_A3804 putative transmembrane protein; multiple antibiotic resistance (MarC)-like protein 196034..196675 Leptothrix cholodnii SP-6 6161427 YP_001789228.1 CDS Lcho_0188 NC_010524.1 196746 198404 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: mpt:Mpe_A3803 putative choline dehydrogenase lipoprotein oxidoreductase; glucose-methanol-choline oxidoreductase 196746..198404 Leptothrix cholodnii SP-6 6161428 YP_001789229.1 CDS Lcho_0189 NC_010524.1 198694 199455 D PFAM: protein of unknown function DUF81; KEGG: mpt:Mpe_A3802 hypothetical protein; hypothetical protein 198694..199455 Leptothrix cholodnii SP-6 6161429 YP_001789230.1 CDS Lcho_0190 NC_010524.1 199583 200359 R PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A0066 cAMP phosphodiesterases, class-II, metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein complement(199583..200359) Leptothrix cholodnii SP-6 6161430 YP_001789231.1 CDS Lcho_0191 NC_010524.1 200642 201328 R PFAM: Forkhead-associated protein; KEGG: mpt:Mpe_A0067 hypothetical protein; FHA domain-containing protein complement(200642..201328) Leptothrix cholodnii SP-6 6160705 YP_001789232.1 CDS Lcho_0192 NC_010524.1 201377 202183 R PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: mpt:Mpe_A0068 serine/threonine specific protein phosphatase (putative); protein serine/threonine phosphatase complement(201377..202183) Leptothrix cholodnii SP-6 6160706 YP_001789233.1 CDS Lcho_0193 NC_010524.1 202186 203130 R PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mpt:Mpe_A0069 putative serine/threonine protein kinase; serine/threonine protein kinase complement(202186..203130) Leptothrix cholodnii SP-6 6160707 YP_001789234.1 CDS Lcho_0194 NC_010524.1 203300 204043 R PFAM: Integral membrane protein TerC; KEGG: mpt:Mpe_A0070 hypothetical protein; integral membrane protein TerC complement(203300..204043) Leptothrix cholodnii SP-6 6160708 YP_001789235.1 CDS Lcho_0195 NC_010524.1 204396 204797 D PFAM: SWIB/MDM2 domain protein; KEGG: mpt:Mpe_A0056 hypothetical protein; SWIB/MDM2 domain-containing protein 204396..204797 Leptothrix cholodnii SP-6 6160709 YP_001789236.1 CDS Lcho_0196 NC_010524.1 204878 205825 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(204878..205825) Leptothrix cholodnii SP-6 6160710 YP_001789237.1 CDS Lcho_0197 NC_010524.1 205896 206510 D PFAM: protein of unknown function DUF1234; KEGG: mpt:Mpe_A3781 hypothetical protein; hypothetical protein 205896..206510 Leptothrix cholodnii SP-6 6161406 YP_001789238.1 CDS Lcho_0198 NC_010524.1 206541 207449 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: mpt:Mpe_A3780 putative chromosome partitioning protein ParB; parB-like partition protein 206541..207449 Leptothrix cholodnii SP-6 6161407 YP_001789239.1 CDS Lcho_0199 NC_010524.1 207900 209822 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: mpt:Mpe_A3779 hypothetical protein; putative serine protein kinase PrkA 207900..209822 Leptothrix cholodnii SP-6 6161408 YP_001789240.1 CDS Lcho_0200 NC_010524.1 209847 211133 D PFAM: protein of unknown function DUF444; KEGG: mpt:Mpe_A3778 hypothetical protein; hypothetical protein 209847..211133 Leptothrix cholodnii SP-6 6161409 YP_001789241.1 CDS Lcho_0201 NC_010524.1 211171 212769 D PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein; SpoVR family protein 211171..212769 Leptothrix cholodnii SP-6 6161410 YP_001789242.1 CDS Lcho_0202 NC_010524.1 212833 214254 R PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3774 putative oxidoreductase; D-lactate dehydrogenase complement(212833..214254) Leptothrix cholodnii SP-6 6161411 YP_001789243.1 CDS Lcho_0203 NC_010524.1 214368 215111 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pna:Pnap_3266 putative transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 214368..215111 Leptothrix cholodnii SP-6 6162725 YP_001789244.1 CDS Lcho_0204 NC_010524.1 215211 215405 D KEGG: rfr:Rfer_0021 hypothetical protein; hypothetical protein 215211..215405 Leptothrix cholodnii SP-6 6162726 YP_001789245.1 CDS Lcho_0205 NC_010524.1 215419 216225 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A3371 putative GntR-family transcriptional regulator; GntR family transcriptional regulator complement(215419..216225) Leptothrix cholodnii SP-6 6162727 YP_001789246.1 CDS Lcho_0206 NC_010524.1 216294 217178 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2470 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(216294..217178) Leptothrix cholodnii SP-6 6162728 YP_001789247.1 CDS Lcho_0207 NC_010524.1 217178 218074 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A3373 ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein complement(217178..218074) Leptothrix cholodnii SP-6 6162729 YP_001789248.1 CDS Lcho_0208 NC_010524.1 218095 219402 R KEGG: pna:Pnap_3269 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal complement(218095..219402) Leptothrix cholodnii SP-6 6162730 YP_001789249.1 CDS Lcho_0209 NC_010524.1 219487 220488 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A3375 ABC transporter ATP-binding protein; ABC transporter-like protein complement(219487..220488) Leptothrix cholodnii SP-6 6161301 YP_001789250.1 CDS Lcho_0210 NC_010524.1 220745 221488 D PFAM: Asp/Glu/hydantoin racemase; KEGG: mpt:Mpe_A3376 hydantoin racemase; Asp/Glu/hydantoin racemase 220745..221488 Leptothrix cholodnii SP-6 6161302 YP_001789251.1 CDS Lcho_0211 NC_010524.1 221594 223609 D KEGG: azo:azo1492 putative histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 221594..223609 Leptothrix cholodnii SP-6 6161303 YP_001789252.1 CDS Lcho_0212 NC_010524.1 223578 224543 R PFAM: protein of unknown function DUF45; KEGG: mpt:Mpe_A3377 hypothetical protein; hypothetical protein complement(223578..224543) Leptothrix cholodnii SP-6 6161304 YP_001789253.1 CDS Lcho_0213 NC_010524.1 224521 225285 R PFAM: phospholipid/glycerol acyltransferase; KEGG: mpt:Mpe_A3378 putative acyltransferase; phospholipid/glycerol acyltransferase complement(224521..225285) Leptothrix cholodnii SP-6 6161305 YP_001789254.1 CDS Lcho_0214 NC_010524.1 225285 225884 R TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: mpt:Mpe_A3379 putative phosphatase protein; histidinol-phosphate phosphatase family protein complement(225285..225884) Leptothrix cholodnii SP-6 6161306 YP_001789255.1 CDS Lcho_0215 NC_010524.1 225895 228036 R KEGG: mpt:Mpe_A3380 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta complement(225895..228036) Leptothrix cholodnii SP-6 6163479 YP_001789256.1 CDS glyQ NC_010524.1 228042 228995 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(228042..228995) Leptothrix cholodnii SP-6 6163480 YP_001789257.1 CDS Lcho_0217 NC_010524.1 229088 229903 R KEGG: mpt:Mpe_A0256 hypothetical protein; hypothetical protein complement(229088..229903) Leptothrix cholodnii SP-6 6163481 YP_001789258.1 CDS Lcho_0218 NC_010524.1 229842 230666 R PFAM: Nucleotidyl transferase; KEGG: mpt:Mpe_A0257 putative mannose-1-phosphate guanyltransferase-related protein; nucleotidyl transferase complement(229842..230666) Leptothrix cholodnii SP-6 6163482 YP_001789259.1 CDS Lcho_0219 NC_010524.1 230688 231263 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_0227 hemerythrin HHE cation binding protein; hemerythrin HHE cation-binding domain-containing protein complement(230688..231263) Leptothrix cholodnii SP-6 6163483 YP_001789260.1 CDS Lcho_0220 NC_010524.1 231449 233494 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: ajs:Ajs_3959 transketolase; transketolase 231449..233494 Leptothrix cholodnii SP-6 6163484 YP_001789261.1 CDS Lcho_0221 NC_010524.1 233567 234565 D KEGG: reh:H16_A3146 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 233567..234565 Leptothrix cholodnii SP-6 6161941 YP_001789262.1 CDS Lcho_0222 NC_010524.1 234731 236197 D KEGG: pca:Pcar_1811 hypothetical protein; hypothetical protein 234731..236197 Leptothrix cholodnii SP-6 6161942 YP_001789263.1 CDS Lcho_0223 NC_010524.1 236209 236835 D KEGG: pca:Pcar_1810 hypothetical protein; hypothetical protein 236209..236835 Leptothrix cholodnii SP-6 6161943 YP_001789264.1 CDS Lcho_0224 NC_010524.1 236825 240226 D KEGG: pca:Pcar_1809 hypothetical protein; hypothetical protein 236825..240226 Leptothrix cholodnii SP-6 6161944 YP_001789265.1 CDS Lcho_0225 NC_010524.1 240223 241437 D KEGG: cph:Cpha266_1443 hypothetical protein; hypothetical protein 240223..241437 Leptothrix cholodnii SP-6 6161945 YP_001789266.1 CDS Lcho_0226 NC_010524.1 241426 242085 R KEGG: mpt:Mpe_A0262 putative signal peptide protein; putative signal peptide protein complement(241426..242085) Leptothrix cholodnii SP-6 6161946 YP_001789267.1 CDS Lcho_0227 NC_010524.1 242079 242867 R TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: mpt:Mpe_A0263 biotin acetyl-CoA-carboxylase synthetase; biotin--acetyl-CoA-carboxylase ligase complement(242079..242867) Leptothrix cholodnii SP-6 6162751 YP_001789268.1 CDS Lcho_0228 NC_010524.1 242876 243415 R PFAM: nuclear protein SET; KEGG: mpt:Mpe_A0264 hypothetical protein; nuclear protein SET complement(242876..243415) Leptothrix cholodnii SP-6 6162752 YP_001789269.1 CDS Lcho_0229 NC_010524.1 243539 246169 D decatenates replicating daughter chromosomes; DNA topoisomerase III 243539..246169 Leptothrix cholodnii SP-6 6162753 YP_001789270.1 CDS Lcho_0230 NC_010524.1 246166 247317 D PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: saz:Sama_3396 response regulator receiver protein; metal dependent phosphohydrolase 246166..247317 Leptothrix cholodnii SP-6 6162754 YP_001789271.1 CDS Lcho_0231 NC_010524.1 247339 248295 D PFAM: Auxin Efflux Carrier; KEGG: mpt:Mpe_A0268 putative MdcF malonate transporter; auxin efflux carrier 247339..248295 Leptothrix cholodnii SP-6 6162755 YP_001789272.1 CDS Lcho_0232 NC_010524.1 248341 248832 R KEGG: neu:NE1377 protein of unknown function DUF132; hypothetical protein complement(248341..248832) Leptothrix cholodnii SP-6 6162756 YP_001789273.1 CDS Lcho_0233 NC_010524.1 249060 250733 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A3350 putative sugar transport protein; general substrate transporter 249060..250733 Leptothrix cholodnii SP-6 6160552 YP_001789274.1 CDS Lcho_0234 NC_010524.1 250841 251014 D KEGG: ajs:Ajs_3750 hypothetical protein; hypothetical protein 250841..251014 Leptothrix cholodnii SP-6 6160553 YP_001789275.1 CDS Lcho_0235 NC_010524.1 251063 251251 D KEGG: rfr:Rfer_3780 hypothetical protein; hypothetical protein 251063..251251 Leptothrix cholodnii SP-6 6160554 YP_001789276.1 CDS Lcho_0236 NC_010524.1 251255 254062 D PFAM: Na+/solute symporter; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_3779 periplasmic sensor signal transduction histidine kinase; histidine kinase 251255..254062 Leptothrix cholodnii SP-6 6160555 YP_001789277.1 CDS Lcho_0237 NC_010524.1 254034 254408 D PFAM: response regulator receiver; KEGG: rfr:Rfer_3778 response regulator receiver domain protein; response regulator receiver protein 254034..254408 Leptothrix cholodnii SP-6 6160556 YP_001789278.1 CDS Lcho_0238 NC_010524.1 254405 256600 D KEGG: rfr:Rfer_3777 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 254405..256600 Leptothrix cholodnii SP-6 6160557 YP_001789279.1 CDS Lcho_0239 NC_010524.1 256769 257434 D PFAM: YbaK/prolyl-tRNA synthetase associated region; protein of unknown function DUF1289; KEGG: rfr:Rfer_3823 YbaK/prolyl-tRNA synthetase associated protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 256769..257434 Leptothrix cholodnii SP-6 6160521 YP_001789280.1 CDS Lcho_0240 NC_010524.1 257542 259233 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3752 major facilitator superfamily MFS_1; major facilitator transporter 257542..259233 Leptothrix cholodnii SP-6 6160522 YP_001789281.1 CDS Lcho_0241 NC_010524.1 259269 260456 R hypothetical protein complement(259269..260456) Leptothrix cholodnii SP-6 6160523 YP_001789282.1 CDS Lcho_0242 NC_010524.1 260453 261088 R PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: mpt:Mpe_A3043 DNA binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(260453..261088) Leptothrix cholodnii SP-6 6160524 YP_001789283.1 CDS Lcho_0243 NC_010524.1 261085 262557 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: mpt:Mpe_A3044 methanol utilization control sensor protein MoxY, putative; histidine kinase complement(261085..262557) Leptothrix cholodnii SP-6 6160525 YP_001789284.1 CDS Lcho_0244 NC_010524.1 262651 262833 D PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A 262651..262833 Leptothrix cholodnii SP-6 6160526 YP_001789285.1 CDS Lcho_0245 NC_010524.1 262948 263862 D possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 262948..263862 Leptothrix cholodnii SP-6 6160533 YP_001789286.1 CDS Lcho_0246 NC_010524.1 263895 264674 D Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 263895..264674 Leptothrix cholodnii SP-6 6160534 YP_001789287.1 CDS Lcho_0247 NC_010524.1 264671 264967 D PFAM: coenzyme PQQ synthesis D; KEGG: azo:azo1189 PqqD protein; coenzyme PQQ synthesis D 264671..264967 Leptothrix cholodnii SP-6 6160535 YP_001789288.1 CDS Lcho_0248 NC_010524.1 264964 266124 D KEGG: azo:azo1190 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 264964..266124 Leptothrix cholodnii SP-6 6160536 YP_001789289.1 CDS Lcho_0249 NC_010524.1 266201 266644 D PFAM: UspA domain protein; KEGG: mpt:Mpe_A3490 universal stress protein; UspA domain-containing protein 266201..266644 Leptothrix cholodnii SP-6 6160537 YP_001789290.1 CDS Lcho_0250 NC_010524.1 266729 267115 R KEGG: reu:Reut_B3636 hypothetical protein; hypothetical protein complement(266729..267115) Leptothrix cholodnii SP-6 6160538 YP_001789291.1 CDS Lcho_0251 NC_010524.1 267120 267866 R PFAM: cytochrome c oxidase subunit III; KEGG: pol:Bpro_0729 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(267120..267866) Leptothrix cholodnii SP-6 6160527 YP_001789292.1 CDS Lcho_0252 NC_010524.1 267893 268561 R PFAM: cytochrome c oxidase subunit III; KEGG: pol:Bpro_0728 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III complement(267893..268561) Leptothrix cholodnii SP-6 6160528 YP_001789293.1 CDS Lcho_0253 NC_010524.1 268558 270324 R KEGG: pol:Bpro_0727 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I complement(268558..270324) Leptothrix cholodnii SP-6 6160529 YP_001789294.1 CDS Lcho_0254 NC_010524.1 270367 271176 R PFAM: cytochrome c oxidase subunit II; KEGG: har:HEAR1115 putative cytochrome c oxidase polypeptide II precursor (cytochrome cbb3 subunit 2) (oxidase aa(3) subunit 2) ith a fused monohemic cytochrome c at its C terminus; cytochrome c oxidase subunit II complement(270367..271176) Leptothrix cholodnii SP-6 6160530 YP_001789295.1 CDS Lcho_0255 NC_010524.1 271228 271731 R KEGG: mms:mma_1857 hypothetical protein; hypothetical protein complement(271228..271731) Leptothrix cholodnii SP-6 6160531 YP_001789296.1 CDS Lcho_0256 NC_010524.1 271937 272416 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_4739 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 271937..272416 Leptothrix cholodnii SP-6 6160532 YP_001789297.1 CDS Lcho_0257 NC_010524.1 272459 273232 D KEGG: azo:azo2876 hypothetical protein; hypothetical protein 272459..273232 Leptothrix cholodnii SP-6 6160576 YP_001789298.1 CDS Lcho_0258 NC_010524.1 273378 273941 D TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: psa:PST_3162 alkyl hydroperoxide reductase subunit C; peroxiredoxin 273378..273941 Leptothrix cholodnii SP-6 6160577 YP_001789299.1 CDS Lcho_0259 NC_010524.1 274065 275648 D TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: rso:RSp0246 probable alkyl hydroperoxide reductase (subunit F) oxidoreductase protein; alkyl hydroperoxide reductase subunit F 274065..275648 Leptothrix cholodnii SP-6 6160578 YP_001789300.1 CDS Lcho_0260 NC_010524.1 275673 276581 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4560 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(275673..276581) Leptothrix cholodnii SP-6 6160579 YP_001789301.1 CDS Lcho_0261 NC_010524.1 276698 277339 D PFAM: DSBA oxidoreductase; KEGG: aav:Aave_3987 DsbA oxidoreductase; DSBA oxidoreductase 276698..277339 Leptothrix cholodnii SP-6 6160580 YP_001789302.1 CDS Lcho_0262 NC_010524.1 277484 278080 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bch:Bcen2424_3500 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 277484..278080 Leptothrix cholodnii SP-6 6160581 YP_001789303.1 CDS Lcho_0263 NC_010524.1 278230 278706 D KEGG: mpt:Mpe_A0593 hypothetical protein; hypothetical protein 278230..278706 Leptothrix cholodnii SP-6 6160508 YP_001789304.1 CDS Lcho_0264 NC_010524.1 278717 280453 D PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: mpt:Mpe_A0594 family M61 unassigned peptidase; peptidase M61 domain-containing protein 278717..280453 Leptothrix cholodnii SP-6 6160509 YP_001789305.1 CDS Lcho_0265 NC_010524.1 280523 281725 D KEGG: mpt:Mpe_A0595 hypothetical protein; hypothetical protein 280523..281725 Leptothrix cholodnii SP-6 6160510 YP_001789306.1 CDS Lcho_0266 NC_010524.1 281825 282622 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: aav:Aave_0882 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 281825..282622 Leptothrix cholodnii SP-6 6160511 YP_001789307.1 CDS Lcho_0267 NC_010524.1 282692 283399 R KEGG: mpt:Mpe_A0592 putative thiol:disulfide interchange protein; putative thiol:disulfide interchange protein complement(282692..283399) Leptothrix cholodnii SP-6 6160512 YP_001789308.1 CDS Lcho_0268 NC_010524.1 283501 284640 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: mpt:Mpe_A0591 monooxygenase family protein; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(283501..284640) Leptothrix cholodnii SP-6 6160513 YP_001789309.1 CDS Lcho_0269 NC_010524.1 284699 284935 R PFAM: Tail Collar domain protein; KEGG: pna:Pnap_4767 phage tail collar domain protein; tail collar domain-containing protein complement(284699..284935) Leptothrix cholodnii SP-6 6160539 YP_001789310.1 CDS Lcho_0270 NC_010524.1 285092 285964 D PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: mpt:Mpe_A0589 hypothetical protein; MOSC domain-containing protein 285092..285964 Leptothrix cholodnii SP-6 6160540 YP_001789311.1 CDS Lcho_0271 NC_010524.1 286128 287222 D TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: mpt:Mpe_A3166 putative GTP-binding protein; GTP-binding protein YchF 286128..287222 Leptothrix cholodnii SP-6 6160541 YP_001789312.1 CDS Lcho_0272 NC_010524.1 287248 287481 D hypothetical protein 287248..287481 Leptothrix cholodnii SP-6 6160542 YP_001789313.1 CDS Lcho_0273 NC_010524.1 287506 288492 R PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rru:Rru_A1847 transglutaminase-like; transglutaminase domain-containing protein complement(287506..288492) Leptothrix cholodnii SP-6 6160543 YP_001789314.1 CDS Lcho_0274 NC_010524.1 288567 290096 R KEGG: dac:Daci_1594 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(288567..290096) Leptothrix cholodnii SP-6 6160544 YP_001789315.1 CDS Lcho_0275 NC_010524.1 290209 291537 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: azo:azo3673 two-component system histidine kinase; histidine kinase complement(290209..291537) Leptothrix cholodnii SP-6 6163968 YP_001789316.1 CDS Lcho_0276 NC_010524.1 291534 291638 R hypothetical protein complement(291534..291638) Leptothrix cholodnii SP-6 6163969 YP_001789317.1 CDS Lcho_0277 NC_010524.1 291635 292342 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bte:BTH_I0673 DNA-binding response regulator; two component transcriptional regulator complement(291635..292342) Leptothrix cholodnii SP-6 6163970 YP_001789318.1 CDS Lcho_0278 NC_010524.1 292342 292767 R PFAM: regulatory protein AsnC/Lrp family; Helix-turn-helix type 11 domain protein; KEGG: rfr:Rfer_3882 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(292342..292767) Leptothrix cholodnii SP-6 6163971 YP_001789319.1 CDS Lcho_0279 NC_010524.1 292901 293950 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 292901..293950 Leptothrix cholodnii SP-6 6163972 YP_001789320.1 CDS Lcho_0280 NC_010524.1 293979 295118 R KEGG: dar:Daro_1057 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal complement(293979..295118) Leptothrix cholodnii SP-6 6163973 YP_001789321.1 CDS Lcho_0281 NC_010524.1 295377 297548 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: vch:VC1560 catalase/peroxidase; catalase/peroxidase HPI 295377..297548 Leptothrix cholodnii SP-6 6160343 YP_001789322.1 CDS Lcho_0282 NC_010524.1 297560 298906 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pmy:Pmen_0570 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(297560..298906) Leptothrix cholodnii SP-6 6160344 YP_001789323.1 CDS Lcho_0283 NC_010524.1 299046 302096 D PFAM: protein of unknown function DUF748; KEGG: mpt:Mpe_A2234 hypothetical protein; hypothetical protein 299046..302096 Leptothrix cholodnii SP-6 6160345 YP_001789324.1 CDS Lcho_0284 NC_010524.1 302103 302588 R KEGG: eba:ebB57 hypothetical protein; hypothetical protein complement(302103..302588) Leptothrix cholodnii SP-6 6160346 YP_001789325.1 CDS Lcho_0285 NC_010524.1 302627 303022 R KEGG: eba:ebB56 hypothetical protein; hypothetical protein complement(302627..303022) Leptothrix cholodnii SP-6 6160347 YP_001789326.1 CDS Lcho_0286 NC_010524.1 303088 304092 R PFAM: conserved hypothetical protein; KEGG: rfr:Rfer_3194 uncharacterized protein UPF0065; hypothetical protein complement(303088..304092) Leptothrix cholodnii SP-6 6160348 YP_001789327.1 CDS Lcho_0287 NC_010524.1 304124 304612 R PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_2665 endoribonuclease L-PSP; endoribonuclease L-PSP complement(304124..304612) Leptothrix cholodnii SP-6 6160877 YP_001789328.1 CDS lysS NC_010524.1 304617 306161 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(304617..306161) Leptothrix cholodnii SP-6 6160878 YP_001789329.1 CDS Lcho_0289 NC_010524.1 306280 307338 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: bbr:BB0155 probable oxidoreductase; oxidoreductase domain-containing protein 306280..307338 Leptothrix cholodnii SP-6 6160879 YP_001789330.1 CDS Lcho_0290 NC_010524.1 307358 307942 D KEGG: reh:H16_B0032 acetyltransferase; acetyltransferase 307358..307942 Leptothrix cholodnii SP-6 6160880 YP_001789331.1 CDS Lcho_0291 NC_010524.1 308023 309195 D KEGG: cau:Caur_3354 hypothetical protein; hypothetical protein 308023..309195 Leptothrix cholodnii SP-6 6160881 YP_001789332.1 CDS Lcho_0292 NC_010524.1 309195 309716 D KEGG: maq:Maqu_1318 hypothetical protein; hypothetical protein 309195..309716 Leptothrix cholodnii SP-6 6160882 YP_001789333.1 CDS Lcho_0293 NC_010524.1 309732 310880 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: bpt:Bpet4818 lipopolysaccharides biosynthesis aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 309732..310880 Leptothrix cholodnii SP-6 6161823 YP_001789334.1 CDS Lcho_0294 NC_010524.1 310877 312157 D PFAM: polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein; polysaccharide biosynthesis protein 310877..312157 Leptothrix cholodnii SP-6 6161824 YP_001789335.1 CDS Lcho_0295 NC_010524.1 312195 312881 D KEGG: bpt:Bpet1526 acetyltransferase; acetyltransferase 312195..312881 Leptothrix cholodnii SP-6 6161825 YP_001789336.1 CDS Lcho_0296 NC_010524.1 312893 313990 D PFAM: glycosyl transferase group 1; KEGG: bpt:Bpet1525 glycosyltransferase; group 1 glycosyl transferase 312893..313990 Leptothrix cholodnii SP-6 6161826 YP_001789337.1 CDS Lcho_0297 NC_010524.1 313987 315237 D PFAM: glycosyl transferase group 1; KEGG: plu:plu4805 WblI protein; group 1 glycosyl transferase 313987..315237 Leptothrix cholodnii SP-6 6161827 YP_001789338.1 CDS Lcho_0298 NC_010524.1 315240 316031 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0605 hypothetical protein; type 11 methyltransferase 315240..316031 Leptothrix cholodnii SP-6 6161828 YP_001789339.1 CDS Lcho_0299 NC_010524.1 316103 317281 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein; glutamine--scyllo-inositol transaminase 316103..317281 Leptothrix cholodnii SP-6 6161496 YP_001789340.1 CDS Lcho_0300 NC_010524.1 317338 317943 D PFAM: sugar transferase; KEGG: mpt:Mpe_A0608 putative sugar transferase; sugar transferase 317338..317943 Leptothrix cholodnii SP-6 6161497 YP_001789341.1 CDS Lcho_0301 NC_010524.1 317981 319852 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: mpt:Mpe_A0609 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 317981..319852 Leptothrix cholodnii SP-6 6161498 YP_001789342.1 CDS Lcho_0302 NC_010524.1 319917 320825 D PFAM: Patatin; KEGG: aav:Aave_2086 patatin; patatin 319917..320825 Leptothrix cholodnii SP-6 6161499 YP_001789343.1 CDS Lcho_0303 NC_010524.1 320880 323849 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: reh:H16_A0400 excinuclease ABC, ATPase subunit (A); excinuclease ABC subunit A complement(320880..323849) Leptothrix cholodnii SP-6 6161500 YP_001789344.1 CDS Lcho_0304 NC_010524.1 330640 330918 D hypothetical protein 330640..330918 Leptothrix cholodnii SP-6 6163189 YP_001789345.1 CDS Lcho_0305 NC_010524.1 330958 331857 R PFAM: Pirin domain protein; KEGG: azo:azo3369 hypothetical protein; pirin domain-containing protein complement(330958..331857) Leptothrix cholodnii SP-6 6163190 YP_001789346.1 CDS Lcho_0306 NC_010524.1 331951 332580 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: eba:ebA3879 acyl carrier protein phosphodiesterase; NAD(P)H dehydrogenase (quinone) complement(331951..332580) Leptothrix cholodnii SP-6 6163191 YP_001789347.1 CDS Lcho_0307 NC_010524.1 332719 333687 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo3371 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 332719..333687 Leptothrix cholodnii SP-6 6163192 YP_001789348.1 CDS Lcho_0308 NC_010524.1 333698 334546 D KEGG: pna:Pnap_1706 hypothetical protein; hypothetical protein 333698..334546 Leptothrix cholodnii SP-6 6163193 YP_001789349.1 CDS Lcho_0309 NC_010524.1 334561 335532 R KEGG: rpc:RPC_0663 proline dehydrogenase; hypothetical protein complement(334561..335532) Leptothrix cholodnii SP-6 6163177 YP_001789350.1 CDS Lcho_0310 NC_010524.1 335661 336269 R PFAM: Glutathione S-transferase domain; KEGG: aav:Aave_0048 glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein complement(335661..336269) Leptothrix cholodnii SP-6 6163178 YP_001789351.1 CDS Lcho_0311 NC_010524.1 336435 336815 D PFAM: glutaredoxin; KEGG: rfr:Rfer_0010 glutaredoxin; glutaredoxin 336435..336815 Leptothrix cholodnii SP-6 6163179 YP_001789352.1 CDS Lcho_0312 NC_010524.1 336959 337771 D PFAM: Metal-dependent hydrolase HDOD; KEGG: mpt:Mpe_A3688 putative signal transduction protein; putative signal transduction protein 336959..337771 Leptothrix cholodnii SP-6 6163180 YP_001789353.1 CDS Lcho_0313 NC_010524.1 337875 339152 D KEGG: mgi:Mflv_3257 GTP cyclohydrolase II; hypothetical protein 337875..339152 Leptothrix cholodnii SP-6 6163181 YP_001789354.1 CDS Lcho_0314 NC_010524.1 339163 340491 D PFAM: protein of unknown function DUF1688; KEGG: rha:RHA1_ro00257 hypothetical protein; hypothetical protein 339163..340491 Leptothrix cholodnii SP-6 6163182 YP_001789355.1 CDS Lcho_0315 NC_010524.1 340534 341169 D TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: rfr:Rfer_2073 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 340534..341169 Leptothrix cholodnii SP-6 6162539 YP_001789356.1 CDS Lcho_0316 NC_010524.1 341023 342525 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: mpt:Mpe_A3620 putative glutamate synthase; ferredoxin-dependent glutamate synthase complement(341023..342525) Leptothrix cholodnii SP-6 6162540 YP_001789357.1 CDS Lcho_0317 NC_010524.1 342759 344360 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: kra:Krad_2011 diguanylate cyclase; diguanylate cyclase 342759..344360 Leptothrix cholodnii SP-6 6162541 YP_001789358.1 CDS Lcho_0318 NC_010524.1 344428 345717 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 344428..345717 Leptothrix cholodnii SP-6 6162542 YP_001789359.1 CDS Lcho_0319 NC_010524.1 345806 346426 D PFAM: Glutathione S-transferase domain; KEGG: aav:Aave_4668 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 345806..346426 Leptothrix cholodnii SP-6 6162543 YP_001789360.1 CDS Lcho_0320 NC_010524.1 346433 346960 R hypothetical protein complement(346433..346960) Leptothrix cholodnii SP-6 6162544 YP_001789361.1 CDS metX NC_010524.1 347393 348526 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 347393..348526 Leptothrix cholodnii SP-6 6161445 YP_001789362.1 CDS Lcho_0322 NC_010524.1 348523 349107 D TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A3583 hypothetical protein; methionine biosynthesis protein MetW 348523..349107 Leptothrix cholodnii SP-6 6161446 YP_001789363.1 CDS Lcho_0323 NC_010524.1 349450 349977 D hypothetical protein 349450..349977 Leptothrix cholodnii SP-6 6161447 YP_001789364.1 CDS Lcho_0324 NC_010524.1 350044 351537 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mpt:Mpe_A3578 putative peptidase; peptidase M20 350044..351537 Leptothrix cholodnii SP-6 6161448 YP_001789365.1 CDS Lcho_0325 NC_010524.1 351562 352647 R PFAM: Auxin Efflux Carrier; KEGG: mpt:Mpe_A0129 malonate transporter, putative; auxin efflux carrier complement(351562..352647) Leptothrix cholodnii SP-6 6161449 YP_001789366.1 CDS Lcho_0326 NC_010524.1 352711 353715 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_0755 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit Dctp complement(352711..353715) Leptothrix cholodnii SP-6 6161450 YP_001789367.1 CDS Lcho_0327 NC_010524.1 353826 354329 R TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: pna:Pnap_0046 carbohydrate kinase, thermoresistant glucokinase family; carbohydrate kinase complement(353826..354329) Leptothrix cholodnii SP-6 6160379 YP_001789368.1 CDS Lcho_0328 NC_010524.1 354499 355524 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pna:Pnap_0047 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 354499..355524 Leptothrix cholodnii SP-6 6160380 YP_001789369.1 CDS Lcho_0329 NC_010524.1 355539 356930 R KEGG: mpt:Mpe_A1429 L-serine ammonia-lyase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(355539..356930) Leptothrix cholodnii SP-6 6160381 YP_001789370.1 CDS Lcho_0330 NC_010524.1 356999 359038 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cvi:CV_3427 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(356999..359038) Leptothrix cholodnii SP-6 6160382 YP_001789371.1 CDS Lcho_0331 NC_010524.1 359370 359687 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 359370..359687 Leptothrix cholodnii SP-6 6160383 YP_001789372.1 CDS Lcho_0332 NC_010524.1 359684 361954 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: asa:ASA_3266 chemotaxis protein CheA; CheA signal transduction histidine kinase 359684..361954 Leptothrix cholodnii SP-6 6160384 YP_001789373.1 CDS Lcho_0333 NC_010524.1 361951 364113 D KEGG: rpe:RPE_1195 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 361951..364113 Leptothrix cholodnii SP-6 6160564 YP_001789374.1 CDS Lcho_0334 NC_010524.1 364124 364633 D PFAM: CheW domain protein; KEGG: psb:Psyr_0784 CheW-like protein; CheW protein 364124..364633 Leptothrix cholodnii SP-6 6160565 YP_001789375.1 CDS Lcho_0335 NC_010524.1 364639 365481 D PFAM: MCP methyltransferase CheR-type; KEGG: rfr:Rfer_0904 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 364639..365481 Leptothrix cholodnii SP-6 6160566 YP_001789376.1 CDS Lcho_0336 NC_010524.1 365484 366041 D stimulates methylation of MCP proteins; KEGG: rfr:Rfer_0905 CheD, stimulates methylation of MCP proteins; hypothetical protein 365484..366041 Leptothrix cholodnii SP-6 6160567 YP_001789377.1 CDS Lcho_0337 NC_010524.1 366058 367128 D PFAM: CheB methylesterase; response regulator receiver; KEGG: dar:Daro_1148 chemotaxis-specific methylesterase; response regulator receiver modulated CheB methylesterase 366058..367128 Leptothrix cholodnii SP-6 6160568 YP_001789378.1 CDS Lcho_0338 NC_010524.1 367212 367790 D PFAM: NnrUfamily protein; KEGG: mpt:Mpe_A0055 hypothetical protein; NnrU family protein 367212..367790 Leptothrix cholodnii SP-6 6160569 YP_001789379.1 CDS Lcho_0339 NC_010524.1 367875 369938 D PFAM: UvrD/REP helicase; KEGG: mpt:Mpe_A0128 putative ATP-dependent DNA helicase rep protein; UvrD/REP helicase 367875..369938 Leptothrix cholodnii SP-6 6161140 YP_001789380.1 CDS Lcho_0340 NC_010524.1 370205 372079 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pha:PSHAa2649 serine protease precursor; peptidase S8/S53 subtilisin kexin sedolisin 370205..372079 Leptothrix cholodnii SP-6 6161141 YP_001789381.1 CDS Lcho_0341 NC_010524.1 372330 374213 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; KEGG: pha:PSHAa2649 serine protease precursor; peptidase S8/S53 subtilisin kexin sedolisin 372330..374213 Leptothrix cholodnii SP-6 6161142 YP_001789382.1 CDS Lcho_0342 NC_010524.1 374197 376251 R PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: aav:Aave_0649 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); diguanylate cyclase/phosphodiesterase complement(374197..376251) Leptothrix cholodnii SP-6 6161143 YP_001789383.1 CDS Lcho_0343 NC_010524.1 376351 376734 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: mpt:Mpe_A0276 preprotein translocase YajC subunit; preprotein translocase subunit YajC 376351..376734 Leptothrix cholodnii SP-6 6161144 YP_001789384.1 CDS secD NC_010524.1 376828 378729 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 376828..378729 Leptothrix cholodnii SP-6 6161145 YP_001789385.1 CDS secF NC_010524.1 378754 379788 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 378754..379788 Leptothrix cholodnii SP-6 6160690 YP_001789386.1 CDS Lcho_0346 NC_010524.1 379848 382400 D KEGG: mpt:Mpe_A0279 hypothetical protein; hypothetical protein 379848..382400 Leptothrix cholodnii SP-6 6160691 YP_001789387.1 CDS Lcho_0347 NC_010524.1 382434 382886 R PFAM: protein of unknown function DUF494; KEGG: mpt:Mpe_A0280 hypothetical protein; hypothetical protein complement(382434..382886) Leptothrix cholodnii SP-6 6160692 YP_001789388.1 CDS Lcho_0348 NC_010524.1 382955 384094 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mpt:Mpe_A0281 putative smf protein; DNA protecting protein DprA complement(382955..384094) Leptothrix cholodnii SP-6 6160693 YP_001789389.1 CDS Lcho_0349 NC_010524.1 384107 385291 R PFAM: Peptidoglycan-binding LysM; KEGG: mpt:Mpe_A0282 putative signal peptide protein; peptidoglycan-binding LysM complement(384107..385291) Leptothrix cholodnii SP-6 6160694 YP_001789390.1 CDS Lcho_0350 NC_010524.1 385464 385979 D KEGG: mpt:Mpe_A0283 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 385464..385979 Leptothrix cholodnii SP-6 6160695 YP_001789391.1 CDS Lcho_0351 NC_010524.1 385976 386944 D TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 385976..386944 Leptothrix cholodnii SP-6 6162821 YP_001789392.1 CDS Lcho_0352 NC_010524.1 387029 387490 D KEGG: mpt:Mpe_A0286 hypothetical protein; hypothetical protein 387029..387490 Leptothrix cholodnii SP-6 6162822 YP_001789393.1 CDS Lcho_0353 NC_010524.1 387589 388368 D PFAM: AzlC family protein; KEGG: mpt:Mpe_A0287 hypothetical protein; AzlC family protein 387589..388368 Leptothrix cholodnii SP-6 6162823 YP_001789394.1 CDS Lcho_0354 NC_010524.1 388419 388748 D PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport; branched-chain amino acid transport 388419..388748 Leptothrix cholodnii SP-6 6162824 YP_001789395.1 CDS pgk NC_010524.1 388819 390012 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 388819..390012 Leptothrix cholodnii SP-6 6162825 YP_001789396.1 CDS Lcho_0356 NC_010524.1 390155 390637 D KEGG: pna:Pnap_4909 protein of unknown function DUF88; hypothetical protein 390155..390637 Leptothrix cholodnii SP-6 6162826 YP_001789397.1 CDS Lcho_0357 NC_010524.1 390738 391043 D PFAM: DNA polymerase beta domain protein region; KEGG: rrs:RoseRS_2453 DNA polymerase, beta domain protein region; DNA polymerase subunit beta 390738..391043 Leptothrix cholodnii SP-6 6163660 YP_001789398.1 CDS Lcho_0358 NC_010524.1 391033 391371 D PFAM: protein of unknown function DUF86; KEGG: afw:Anae109_0233 protein of unknown function DUF86; hypothetical protein 391033..391371 Leptothrix cholodnii SP-6 6163661 YP_001789399.1 CDS Lcho_0359 NC_010524.1 391574 393883 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 391574..393883 Leptothrix cholodnii SP-6 6163662 YP_001789400.1 CDS Lcho_0360 NC_010524.1 393987 395417 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 393987..395417 Leptothrix cholodnii SP-6 6163663 YP_001789401.1 CDS Lcho_0361 NC_010524.1 395625 396689 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 395625..396689 Leptothrix cholodnii SP-6 6163664 YP_001789402.1 CDS Lcho_0362 NC_010524.1 396807 397715 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 396807..397715 Leptothrix cholodnii SP-6 6163665 YP_001789403.1 CDS Lcho_0363 NC_010524.1 397741 398859 D KEGG: mpt:Mpe_A0293 hypothetical protein; hypothetical protein 397741..398859 Leptothrix cholodnii SP-6 6162686 YP_001789404.1 CDS Lcho_0364 NC_010524.1 398884 399822 R PFAM: Thioredoxin domain; KEGG: mpt:Mpe_A0294 putative thioredoxin protein; thioredoxin domain-containing protein complement(398884..399822) Leptothrix cholodnii SP-6 6162687 YP_001789405.1 CDS Lcho_0365 NC_010524.1 399871 400365 D KEGG: pna:Pnap_3863 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 399871..400365 Leptothrix cholodnii SP-6 6162688 YP_001789406.1 CDS Lcho_0366 NC_010524.1 400365 401585 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 400365..401585 Leptothrix cholodnii SP-6 6162689 YP_001789407.1 CDS Lcho_0367 NC_010524.1 401600 402640 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: mpt:Mpe_A0297 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein 401600..402640 Leptothrix cholodnii SP-6 6162690 YP_001789408.1 CDS Lcho_0368 NC_010524.1 402690 403679 D KEGG: mpt:Mpe_A0298 hypothetical protein; hypothetical protein 402690..403679 Leptothrix cholodnii SP-6 6162691 YP_001789409.1 CDS Lcho_0369 NC_010524.1 403715 405139 R KEGG: ajs:Ajs_3939 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(403715..405139) Leptothrix cholodnii SP-6 6163775 YP_001789410.1 CDS Lcho_0370 NC_010524.1 405334 406080 D PFAM: peptidase M22 glycoprotease; KEGG: mpt:Mpe_A0301 putative transmembrane protein; peptidase M22 glycoprotease 405334..406080 Leptothrix cholodnii SP-6 6163776 YP_001789411.1 CDS Lcho_0371 NC_010524.1 406088 406594 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A0302 putative ribosomal-protein acetyltransferase; ribosomal-protein-alanine acetyltransferase 406088..406594 Leptothrix cholodnii SP-6 6163777 YP_001789412.1 CDS Lcho_0372 NC_010524.1 406581 407465 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mpt:Mpe_A0303 putative DNA polymerase-related protein, bacteriophage-type; phage SPO1 DNA polymerase-like protein 406581..407465 Leptothrix cholodnii SP-6 6163778 YP_001789413.1 CDS Lcho_0373 NC_010524.1 407485 408567 R PFAM: Mg2 transporter protein CorA family protein; KEGG: mpt:Mpe_A0305 transport protein; Mg2 transporter protein CorA family protein complement(407485..408567) Leptothrix cholodnii SP-6 6163779 YP_001789414.1 CDS Lcho_0374 NC_010524.1 408584 409591 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(408584..409591) Leptothrix cholodnii SP-6 6163780 YP_001789415.1 CDS Lcho_0375 NC_010524.1 409947 410774 R KEGG: mpt:Mpe_A3221 hypothetical protein; hypothetical protein complement(409947..410774) Leptothrix cholodnii SP-6 6163865 YP_001789416.1 CDS Lcho_0376 NC_010524.1 410901 412268 R KEGG: ajs:Ajs_3626 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(410901..412268) Leptothrix cholodnii SP-6 6163866 YP_001789417.1 CDS Lcho_0377 NC_010524.1 412448 413215 D PFAM: cytochrome c assembly protein; KEGG: mpt:Mpe_A3219 ABC-type uncharacterized transport system permease component-like protein; cytochrome c assembly protein 412448..413215 Leptothrix cholodnii SP-6 6163867 YP_001789418.1 CDS Lcho_0378 NC_010524.1 413212 413472 D KEGG: pfl:PFL_5308 hypothetical protein; hypothetical protein 413212..413472 Leptothrix cholodnii SP-6 6163868 YP_001789419.1 CDS Lcho_0379 NC_010524.1 413479 415563 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A3217 signal transduction histidine kinase; histidine kinase 413479..415563 Leptothrix cholodnii SP-6 6163869 YP_001789420.1 CDS Lcho_0380 NC_010524.1 415560 417128 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A3216 type IV pilus expression regulatory protein; two component sigma-54 specific Fis family transcriptional regulator 415560..417128 Leptothrix cholodnii SP-6 6163870 YP_001789421.1 CDS Lcho_0381 NC_010524.1 417125 417754 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mpt:Mpe_A3215 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase 417125..417754 Leptothrix cholodnii SP-6 6163877 YP_001789422.1 CDS Lcho_0382 NC_010524.1 418116 420992 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 418116..420992 Leptothrix cholodnii SP-6 6163878 YP_001789423.1 CDS Lcho_0383 NC_010524.1 421096 422304 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 421096..422304 Leptothrix cholodnii SP-6 6163879 YP_001789424.1 CDS Lcho_0384 NC_010524.1 423175 423552 D PFAM: protein of unknown function DUF167; KEGG: pol:Bpro_1104 protein of unknown function DUF167; hypothetical protein 423175..423552 Leptothrix cholodnii SP-6 6163880 YP_001789425.1 CDS Lcho_0385 NC_010524.1 423587 423982 R hypothetical protein complement(423587..423982) Leptothrix cholodnii SP-6 6163881 YP_001789426.1 CDS Lcho_0386 NC_010524.1 424027 424935 R PFAM: PfkB domain protein; KEGG: mpt:Mpe_A3210 putative sugar kinase transferase protein; ribokinase-like domain-containing protein complement(424027..424935) Leptothrix cholodnii SP-6 6163882 YP_001789427.1 CDS Lcho_0387 NC_010524.1 425260 425376 R hypothetical protein complement(425260..425376) Leptothrix cholodnii SP-6 6160570 YP_001789428.1 CDS Lcho_0388 NC_010524.1 425522 427894 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; KEGG: mca:MCA0985 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(425522..427894) Leptothrix cholodnii SP-6 6160571 YP_001789429.1 CDS Lcho_0389 NC_010524.1 428049 428807 R PFAM: glutamine amidotransferase class-II; KEGG: mpt:Mpe_A3628 putative glutamine amidotransferase; glutamine amidotransferase complement(428049..428807) Leptothrix cholodnii SP-6 6160572 YP_001789430.1 CDS Lcho_0390 NC_010524.1 428830 430107 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpt:Mpe_A0164 putative electron transfer oxidoreductase; monooxygenase FAD-binding complement(428830..430107) Leptothrix cholodnii SP-6 6160573 YP_001789431.1 CDS Lcho_0391 NC_010524.1 430207 432579 D PFAM: Patatin; KEGG: mpt:Mpe_A0430 patatin-like phospholipase; patatin 430207..432579 Leptothrix cholodnii SP-6 6160574 YP_001789432.1 CDS Lcho_0392 NC_010524.1 432596 433588 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pna:Pnap_0226 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator complement(432596..433588) Leptothrix cholodnii SP-6 6160575 YP_001789433.1 CDS engB NC_010524.1 433690 434487 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(433690..434487) Leptothrix cholodnii SP-6 6164014 YP_001789434.1 CDS Lcho_0394 NC_010524.1 434538 435167 D PFAM: cytochrome c class I; KEGG: mpt:Mpe_A0432 cytochrome c; cytochrome c class I 434538..435167 Leptothrix cholodnii SP-6 6164015 YP_001789435.1 CDS Lcho_0395 NC_010524.1 435283 435672 D KEGG: mpt:Mpe_A0435 hypothetical protein; hypothetical protein 435283..435672 Leptothrix cholodnii SP-6 6164016 YP_001789436.1 CDS Lcho_0396 NC_010524.1 435763 436767 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 435763..436767 Leptothrix cholodnii SP-6 6164017 YP_001789437.1 CDS Lcho_0397 NC_010524.1 436769 437494 D PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: mpt:Mpe_A0437 hypothetical protein; ferric reductase domain-containing protein 436769..437494 Leptothrix cholodnii SP-6 6164018 YP_001789438.1 CDS Lcho_0398 NC_010524.1 437561 438190 D PFAM: protein of unknown function DUF161; KEGG: mpt:Mpe_A3339 conserved hypothetical protein VC0940; hypothetical protein 437561..438190 Leptothrix cholodnii SP-6 6164019 YP_001789439.1 CDS Lcho_0399 NC_010524.1 438197 438961 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: eba:ebA3865 hypothetical protein; Sel1 domain-containing protein complement(438197..438961) Leptothrix cholodnii SP-6 6161688 YP_001789440.1 CDS Lcho_0400 NC_010524.1 439096 439764 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 439096..439764 Leptothrix cholodnii SP-6 6161689 YP_001789441.1 CDS Lcho_0401 NC_010524.1 439839 440834 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 439839..440834 Leptothrix cholodnii SP-6 6161690 YP_001789442.1 CDS Lcho_0402 NC_010524.1 440921 441844 D KEGG: azo:azo3910 hypothetical secreted protein; hypothetical protein 440921..441844 Leptothrix cholodnii SP-6 6161691 YP_001789443.1 CDS Lcho_0403 NC_010524.1 441836 442753 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1453 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(441836..442753) Leptothrix cholodnii SP-6 6161692 YP_001789444.1 CDS Lcho_0404 NC_010524.1 442958 443707 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_1454 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 442958..443707 Leptothrix cholodnii SP-6 6161693 YP_001789445.1 CDS Lcho_0405 NC_010524.1 443860 444852 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit Dctp 443860..444852 Leptothrix cholodnii SP-6 6161239 YP_001789446.1 CDS Lcho_0406 NC_010524.1 444932 445462 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dac:Daci_0730 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter DctQ 444932..445462 Leptothrix cholodnii SP-6 6161240 YP_001789447.1 CDS Lcho_0407 NC_010524.1 445478 446737 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 445478..446737 Leptothrix cholodnii SP-6 6161241 YP_001789448.1 CDS Lcho_0408 NC_010524.1 446756 447640 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_1458 xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 446756..447640 Leptothrix cholodnii SP-6 6161242 YP_001789449.1 CDS Lcho_0409 NC_010524.1 447659 448678 R PFAM: putative sugar-binding domain protein; KEGG: vei:Veis_2041 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(447659..448678) Leptothrix cholodnii SP-6 6161243 YP_001789450.1 CDS Lcho_0410 NC_010524.1 448715 449164 R KEGG: vei:Veis_2042 sugar-phosphate isomerases, RpiB/LacA/LacB family; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase complement(448715..449164) Leptothrix cholodnii SP-6 6161244 YP_001789451.1 CDS Lcho_0411 NC_010524.1 449455 451221 D in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 449455..451221 Leptothrix cholodnii SP-6 6161060 YP_001789452.1 CDS Lcho_0412 NC_010524.1 451356 454517 D TIGRFAM: transaldolase; transketolase; PFAM: Transaldolase; Transketolase domain protein; Transketolase central region; KEGG: azo:azo2836 transketolase; transketolase 451356..454517 Leptothrix cholodnii SP-6 6161061 YP_001789453.1 CDS Lcho_0413 NC_010524.1 454793 455476 D PFAM: regulatory protein TetR; KEGG: pol:Bpro_4502 transcriptional regulator, TetR family; TetR family transcriptional regulator 454793..455476 Leptothrix cholodnii SP-6 6161062 YP_001789454.1 CDS Lcho_0414 NC_010524.1 455656 456216 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: aav:Aave_0752 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 455656..456216 Leptothrix cholodnii SP-6 6161063 YP_001789455.1 CDS Lcho_0415 NC_010524.1 456233 457513 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4500 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 456233..457513 Leptothrix cholodnii SP-6 6161064 YP_001789456.1 CDS Lcho_0416 NC_010524.1 457631 458626 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit Dctp 457631..458626 Leptothrix cholodnii SP-6 6161065 YP_001789457.1 CDS Lcho_0417 NC_010524.1 458696 459145 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 458696..459145 Leptothrix cholodnii SP-6 6163654 YP_001789458.1 CDS Lcho_0418 NC_010524.1 459189 461096 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: pna:Pnap_1560 4-hydroxyphenylpyruvate dioxygenase; xylose isomerase domain-containing protein 459189..461096 Leptothrix cholodnii SP-6 6163655 YP_001789459.1 CDS Lcho_0419 NC_010524.1 461152 461988 D PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: pna:Pnap_1561 shikimate dehydrogenase; shikimate dehydrogenase 461152..461988 Leptothrix cholodnii SP-6 6163656 YP_001789460.1 CDS Lcho_0420 NC_010524.1 462037 462513 R PFAM: CBS domain containing protein; KEGG: pna:Pnap_1409 putative signal-transduction protein with CBS domains; signal-transduction protein complement(462037..462513) Leptothrix cholodnii SP-6 6163657 YP_001789461.1 CDS Lcho_0421 NC_010524.1 462586 463482 R PFAM: Pirin domain protein; KEGG: mpt:Mpe_A0588 putative pirin-like protein; pirin domain-containing protein complement(462586..463482) Leptothrix cholodnii SP-6 6163658 YP_001789462.1 CDS Lcho_0422 NC_010524.1 463507 464283 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(463507..464283) Leptothrix cholodnii SP-6 6163659 YP_001789463.1 CDS Lcho_0423 NC_010524.1 464287 465024 R KEGG: mpt:Mpe_A3573 putative proline-rich protein; hypothetical protein complement(464287..465024) Leptothrix cholodnii SP-6 6163834 YP_001789464.1 CDS Lcho_0424 NC_010524.1 465061 466746 R PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A3572 putative long-chain-fatty-acid--CoA ligase protein; AMP-dependent synthetase and ligase complement(465061..466746) Leptothrix cholodnii SP-6 6163835 YP_001789465.1 CDS Lcho_0425 NC_010524.1 466921 468345 R PFAM: NAD(P) transhydrogenase beta subunit; KEGG: pol:Bpro_4544 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase complement(466921..468345) Leptothrix cholodnii SP-6 6163836 YP_001789466.1 CDS Lcho_0426 NC_010524.1 468346 468666 R KEGG: mpt:Mpe_A3570 NAD(P) transhydrogenase, subunit alpha part 2; NAD(P) transhydrogenase subunit alpha part 2 complement(468346..468666) Leptothrix cholodnii SP-6 6163837 YP_001789467.1 CDS Lcho_0427 NC_010524.1 468669 469811 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pna:Pnap_3800 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase complement(468669..469811) Leptothrix cholodnii SP-6 6163838 YP_001789468.1 CDS Lcho_0428 NC_010524.1 469926 470426 D PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A3567 hypothetical protein; NUDIX hydrolase 469926..470426 Leptothrix cholodnii SP-6 6163839 YP_001789469.1 CDS Lcho_0429 NC_010524.1 470410 471552 R PFAM: glycosyl transferase family 9; KEGG: reu:Reut_B4386 lipopolysaccharide heptosyltransferase II; glycosyl transferase family protein complement(470410..471552) Leptothrix cholodnii SP-6 6163871 YP_001789470.1 CDS Lcho_0430 NC_010524.1 471680 471919 D SMART: zinc finger CDGSH-type domain protein; KEGG: mag:amb4007 hypothetical protein; zinc finger CDGSH-type domain-containing protein 471680..471919 Leptothrix cholodnii SP-6 6163872 YP_001789471.1 CDS mnmA NC_010524.1 471958 473100 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 471958..473100 Leptothrix cholodnii SP-6 6163873 YP_001789472.1 CDS Lcho_0432 NC_010524.1 473111 474415 R KEGG: pna:Pnap_1118 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase complement(473111..474415) Leptothrix cholodnii SP-6 6163874 YP_001789473.1 CDS Lcho_0433 NC_010524.1 474412 474951 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pna:Pnap_1119 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(474412..474951) Leptothrix cholodnii SP-6 6163875 YP_001789474.1 CDS Lcho_0434 NC_010524.1 474963 476039 R KEGG: pna:Pnap_1120 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(474963..476039) Leptothrix cholodnii SP-6 6163876 YP_001789475.1 CDS Lcho_0435 NC_010524.1 476086 476610 R PFAM: transferase hexapeptide repeat containing protein; KEGG: rme:Rmet_1059 transferase hexapeptide repeat; hexapaptide repeat-containing transferase complement(476086..476610) Leptothrix cholodnii SP-6 6164111 YP_001789476.1 CDS Lcho_0436 NC_010524.1 476618 477631 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_3139 hypothetical protein; hypothetical protein complement(476618..477631) Leptothrix cholodnii SP-6 6164112 YP_001789477.1 CDS Lcho_0437 NC_010524.1 477684 478862 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_1122 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(477684..478862) Leptothrix cholodnii SP-6 6164113 YP_001789478.1 CDS Lcho_0438 NC_010524.1 478933 479877 R PFAM: pyruvate carboxyltransferase; KEGG: pna:Pnap_1123 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(478933..479877) Leptothrix cholodnii SP-6 6164114 YP_001789479.1 CDS Lcho_0439 NC_010524.1 480015 480971 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6279 transcriptional regulator, LysR family; LysR family transcriptional regulator 480015..480971 Leptothrix cholodnii SP-6 6164115 YP_001789480.1 CDS Lcho_0440 NC_010524.1 481133 481936 D TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sme:SMb20586 putative transcriptional regulator, IclR family protein; IclR family transcriptional regulator 481133..481936 Leptothrix cholodnii SP-6 6164116 YP_001789481.1 CDS Lcho_0441 NC_010524.1 482023 483222 D catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 482023..483222 Leptothrix cholodnii SP-6 6160773 YP_001789482.1 CDS Lcho_0442 NC_010524.1 483230 484984 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bpt:Bpet3318 putative sulfate permease; sulfate transporter 483230..484984 Leptothrix cholodnii SP-6 6160774 YP_001789483.1 CDS Lcho_0443 NC_010524.1 485051 485932 D KEGG: mpt:Mpe_A2032 hypothetical protein; hypothetical protein 485051..485932 Leptothrix cholodnii SP-6 6160775 YP_001789484.1 CDS Lcho_0444 NC_010524.1 485970 486392 D PFAM: thioesterase superfamily protein; KEGG: azo:azo2495 probable thiesterase; 4-hydroxybenzoyl-CoA thioesterase 485970..486392 Leptothrix cholodnii SP-6 6160776 YP_001789485.1 CDS Lcho_0445 NC_010524.1 486408 487346 R PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4514 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(486408..487346) Leptothrix cholodnii SP-6 6160777 YP_001789486.1 CDS Lcho_0446 NC_010524.1 487366 488733 R PFAM: multi antimicrobial extrusion protein MatE; KEGG: scl:sce1470 MATE efflux family protein; multi anti extrusion protein MatE complement(487366..488733) Leptothrix cholodnii SP-6 6160778 YP_001789487.1 CDS Lcho_0447 NC_010524.1 489558 490070 D KEGG: gvi:glr1249 hypothetical protein; hypothetical protein 489558..490070 Leptothrix cholodnii SP-6 6164099 YP_001789488.1 CDS Lcho_0448 NC_010524.1 490114 490344 D PFAM: protein of unknown function DUF1653; KEGG: xcv:XCV3888 hypothetical protein; hypothetical protein 490114..490344 Leptothrix cholodnii SP-6 6164100 YP_001789489.1 CDS Lcho_0449 NC_010524.1 490407 491237 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: par:Psyc_0360 hypothetical protein; Sel1 domain-containing protein 490407..491237 Leptothrix cholodnii SP-6 6164101 YP_001789490.1 CDS Lcho_0450 NC_010524.1 491412 492782 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pmy:Pmen_2247 chromate transporter, chromate ion transporter (CHR) family; chromate transporter 491412..492782 Leptothrix cholodnii SP-6 6164102 YP_001789491.1 CDS Lcho_0451 NC_010524.1 492803 493855 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: azc:AZC_3546 hypothetical protein; hypothetical protein complement(492803..493855) Leptothrix cholodnii SP-6 6164103 YP_001789492.1 CDS Lcho_0452 NC_010524.1 493864 494382 R PFAM: protein of unknown function DUF336; KEGG: bmu:Bmul_1674 protein of unknown function DUF336; hypothetical protein complement(493864..494382) Leptothrix cholodnii SP-6 6164104 YP_001789493.1 CDS Lcho_0453 NC_010524.1 494464 495702 R PFAM: N-acylglucosamine 2-epimerase; KEGG: bpd:BURPS668_0335 N-acylglucosamine 2-epimerase family protein; N-acylglucosamine 2-epimerase complement(494464..495702) Leptothrix cholodnii SP-6 6163907 YP_001789494.1 CDS Lcho_0454 NC_010524.1 495791 496810 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A4284 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(495791..496810) Leptothrix cholodnii SP-6 6163908 YP_001789495.1 CDS Lcho_0455 NC_010524.1 497131 497292 D hypothetical protein 497131..497292 Leptothrix cholodnii SP-6 6163909 YP_001789496.1 CDS Lcho_0456 NC_010524.1 497640 497879 D hypothetical protein 497640..497879 Leptothrix cholodnii SP-6 6163910 YP_001789497.1 CDS Lcho_0457 NC_010524.1 497929 498498 R PFAM: YceI family protein; KEGG: pna:Pnap_3578 YceI family protein; hypothetical protein complement(497929..498498) Leptothrix cholodnii SP-6 6163911 YP_001789498.1 CDS Lcho_0458 NC_010524.1 498553 499125 R PFAM: YceI family protein; KEGG: aav:Aave_3506 YceI family protein; hypothetical protein complement(498553..499125) Leptothrix cholodnii SP-6 6163912 YP_001789499.1 CDS Lcho_0459 NC_010524.1 499166 499735 R PFAM: cytochrome B561; KEGG: mpt:Mpe_A3506 putative cytochrome b-561 membrane protein; cytochrome B561 complement(499166..499735) Leptothrix cholodnii SP-6 6160558 YP_001789500.1 CDS Lcho_0460 NC_010524.1 499880 500839 R PFAM: regulatory protein MerR; KEGG: mpt:Mpe_A0238 hypothetical protein; MerR family transcriptional regulator complement(499880..500839) Leptothrix cholodnii SP-6 6160559 YP_001789501.1 CDS Lcho_0461 NC_010524.1 500997 501572 D PFAM: glutathione peroxidase; KEGG: mpt:Mpe_A0237 putative glutathione peroxidase transmembrane protein; glutathione peroxidase 500997..501572 Leptothrix cholodnii SP-6 6160560 YP_001789502.1 CDS Lcho_0462 NC_010524.1 501876 503195 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A0236 putative dehydrogenase; amine oxidase 501876..503195 Leptothrix cholodnii SP-6 6160561 YP_001789503.1 CDS Lcho_0463 NC_010524.1 503192 504022 D PFAM: protein of unknown function DUF1365; KEGG: mpt:Mpe_A0235 hypothetical protein; hypothetical protein 503192..504022 Leptothrix cholodnii SP-6 6160562 YP_001789504.1 CDS Lcho_0464 NC_010524.1 504096 505361 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0234 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 504096..505361 Leptothrix cholodnii SP-6 6160563 YP_001789505.1 CDS Lcho_0465 NC_010524.1 505445 506032 D KEGG: mpt:Mpe_A0233 hypothetical protein; hypothetical protein 505445..506032 Leptothrix cholodnii SP-6 6160924 YP_001789506.1 CDS Lcho_0466 NC_010524.1 506029 507315 D KEGG: mpt:Mpe_A0232 sodium:galactoside symporter family protein; sodium:galactoside symporter family protein 506029..507315 Leptothrix cholodnii SP-6 6160925 YP_001789507.1 CDS Lcho_0467 NC_010524.1 507318 507866 D KEGG: mpt:Mpe_A0231 lipoprotein, putative; putative lipoprotein 507318..507866 Leptothrix cholodnii SP-6 6160926 YP_001789508.1 CDS Lcho_0468 NC_010524.1 507876 508649 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_1455 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 507876..508649 Leptothrix cholodnii SP-6 6160927 YP_001789509.1 CDS Lcho_0469 NC_010524.1 508646 509095 D KEGG: mpt:Mpe_A0229 hypothetical protein; hypothetical protein 508646..509095 Leptothrix cholodnii SP-6 6160928 YP_001789510.1 CDS Lcho_0470 NC_010524.1 509102 510064 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: mpt:Mpe_A0227 transport protein; magnesium and cobalt transport protein CorA complement(509102..510064) Leptothrix cholodnii SP-6 6160929 YP_001789511.1 CDS Lcho_0471 NC_010524.1 510510 510857 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: mpt:Mpe_A0226 putative PTS system, EIIa component; sigma 54 modulation protein/30S ribosomal protein S30EA 510510..510857 Leptothrix cholodnii SP-6 6162944 YP_001789512.1 CDS Lcho_0472 NC_010524.1 511078 511548 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: mpt:Mpe_A0225 putative nitrogen regulatory IIA protein; putative PTS IIA-like nitrogen-regulatory protein PtsN 511078..511548 Leptothrix cholodnii SP-6 6162945 YP_001789513.1 CDS Lcho_0473 NC_010524.1 511607 512584 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 511607..512584 Leptothrix cholodnii SP-6 6162946 YP_001789514.1 CDS Lcho_0474 NC_010524.1 512621 513052 R PFAM: ferric-uptake regulator; KEGG: mpt:Mpe_A0223 transcriptional regulator; ferric uptake regulator family protein complement(512621..513052) Leptothrix cholodnii SP-6 6162947 YP_001789515.1 CDS Lcho_0475 NC_010524.1 513161 513709 D PFAM: SmpA/OmlA domain protein; KEGG: mpt:Mpe_A0222 small protein A (tmRNA-binding)-like protein; SmpA/OmlA domain-containing protein 513161..513709 Leptothrix cholodnii SP-6 6162948 YP_001789516.1 CDS Lcho_0476 NC_010524.1 513721 514530 D PFAM: dihydrodipicolinate reductase; KEGG: pna:Pnap_3789 dihydrodipicolinate reductase; dihydrodipicolinate reductase 513721..514530 Leptothrix cholodnii SP-6 6162949 YP_001789517.1 CDS Lcho_0477 NC_010524.1 514543 515244 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A0220 putative transport-related membrane protein; MotA/TolQ/ExbB proton channel 514543..515244 Leptothrix cholodnii SP-6 6162095 YP_001789518.1 CDS Lcho_0478 NC_010524.1 515226 515666 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mpt:Mpe_A0219 putative transport-related membrane protein; biopolymer transport protein ExbD/TolR 515226..515666 Leptothrix cholodnii SP-6 6162096 YP_001789519.1 CDS Lcho_0479 NC_010524.1 515745 518408 D TIGRFAM: leucyl-tRNA synthetase; KEGG: pol:Bpro_4605 leucyl-tRNA synthetase; leucyl-tRNA synthetase 515745..518408 Leptothrix cholodnii SP-6 6162097 YP_001789520.1 CDS Lcho_0480 NC_010524.1 518405 518977 D PFAM: Rare lipoprotein B; KEGG: mpt:Mpe_A0217 putative lipoprotein B precursor; rare lipoprotein B 518405..518977 Leptothrix cholodnii SP-6 6162098 YP_001789521.1 CDS holA NC_010524.1 518987 520075 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 518987..520075 Leptothrix cholodnii SP-6 6162099 YP_001789522.1 CDS groES NC_010524.1 520250 520540 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 520250..520540 Leptothrix cholodnii SP-6 6162100 YP_001789523.1 CDS groEL NC_010524.1 520586 522235 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 520586..522235 Leptothrix cholodnii SP-6 6162089 YP_001789524.1 CDS Lcho_0484 NC_010524.1 522307 524430 R TIGRFAM: methyltransferase FkbM family; KEGG: nmu:Nmul_A1173 methyltransferase FkbM; FkbM family methyltransferase complement(522307..524430) Leptothrix cholodnii SP-6 6162090 YP_001789525.1 CDS Lcho_0485 NC_010524.1 524537 524947 R PFAM: Fimbrial protein pilin; KEGG: mca:MCA1510 fimbrial protein; fimbrial protein pilin complement(524537..524947) Leptothrix cholodnii SP-6 6162091 YP_001789526.1 CDS Lcho_0486 NC_010524.1 525113 526558 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mca:MCA1511 TPR domain protein; hypothetical protein complement(525113..526558) Leptothrix cholodnii SP-6 6162092 YP_001789527.1 CDS Lcho_0487 NC_010524.1 526855 528555 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mca:MCA1512 TPR domain protein; hypothetical protein complement(526855..528555) Leptothrix cholodnii SP-6 6162093 YP_001789528.1 CDS Lcho_0488 NC_010524.1 528779 529114 R hypothetical protein complement(528779..529114) Leptothrix cholodnii SP-6 6162094 YP_001789529.1 CDS Lcho_0489 NC_010524.1 529236 531053 D PFAM: O-antigen polymerase; KEGG: mpt:Mpe_A0063 O-antigen polymerase; O-antigen polymerase 529236..531053 Leptothrix cholodnii SP-6 6160355 YP_001789530.1 CDS Lcho_0490 NC_010524.1 531100 532614 D PFAM: AAA-4 family protein; KEGG: neu:NE0383 hypothetical protein; putative transcriptional regulator 531100..532614 Leptothrix cholodnii SP-6 6160356 YP_001789531.1 CDS Lcho_0491 NC_010524.1 532644 533078 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mpt:Mpe_A0062 molybdenum cofactor biosynthesis protein; molybdenum cofactor biosynthesis protein C complement(532644..533078) Leptothrix cholodnii SP-6 6160357 YP_001789532.1 CDS Lcho_0492 NC_010524.1 533233 534894 D PFAM: peptidase M48 Ste24p; KEGG: mpt:Mpe_A0060 conserved hypothetical signal peptide protein; peptidase M48 Ste24p 533233..534894 Leptothrix cholodnii SP-6 6160358 YP_001789533.1 CDS Lcho_0493 NC_010524.1 534928 535296 R PFAM: membrane protein of unknown function; KEGG: mpt:Mpe_A0059 putative transmembrane protein; membrane protein complement(534928..535296) Leptothrix cholodnii SP-6 6160359 YP_001789534.1 CDS Lcho_0494 NC_010524.1 535400 536293 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(535400..536293) Leptothrix cholodnii SP-6 6160360 YP_001789535.1 CDS Lcho_0495 NC_010524.1 536311 537471 R KEGG: pna:Pnap_3953 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase subunit beta complement(536311..537471) Leptothrix cholodnii SP-6 6161817 YP_001789536.1 CDS Lcho_0496 NC_010524.1 537626 538099 R PFAM: regulatory protein RecX; KEGG: pol:Bpro_4684 regulatory protein RecX; regulatory protein RecX complement(537626..538099) Leptothrix cholodnii SP-6 6161818 YP_001789537.1 CDS recA NC_010524.1 538139 539200 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(538139..539200) Leptothrix cholodnii SP-6 6161819 YP_001789538.1 CDS Lcho_0498 NC_010524.1 539365 540036 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mpt:Mpe_A0076 response regulator transcription regulatory protein; two component transcriptional regulator 539365..540036 Leptothrix cholodnii SP-6 6161820 YP_001789539.1 CDS Lcho_0499 NC_010524.1 540079 541635 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: mpt:Mpe_A0077 putative transmembrane sensor histidine kinase transcription regulator protein; histidine kinase 540079..541635 Leptothrix cholodnii SP-6 6161821 YP_001789540.1 CDS Lcho_0500 NC_010524.1 541651 542805 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: mpt:Mpe_A0079 putative rod shape-determining transmembrane protein; rod shape-determining protein RodA complement(541651..542805) Leptothrix cholodnii SP-6 6161822 YP_001789541.1 CDS Lcho_0501 NC_010524.1 542802 544841 R KEGG: mpt:Mpe_A0080 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(542802..544841) Leptothrix cholodnii SP-6 6162128 YP_001789542.1 CDS Lcho_0502 NC_010524.1 544849 545355 R TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: mpt:Mpe_A0081 putative rod shape-determining MreD transmembrane protein; rod shape-determining protein MreD complement(544849..545355) Leptothrix cholodnii SP-6 6162129 YP_001789543.1 CDS Lcho_0503 NC_010524.1 545475 546413 R TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: mpt:Mpe_A0082 putative rod shape-determining MreC transmembrane protein; rod shape-determining protein MreC complement(545475..546413) Leptothrix cholodnii SP-6 6162130 YP_001789544.1 CDS Lcho_0504 NC_010524.1 546468 547517 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(546468..547517) Leptothrix cholodnii SP-6 6162131 YP_001789545.1 CDS gatC NC_010524.1 547854 548153 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 547854..548153 Leptothrix cholodnii SP-6 6162132 YP_001789546.1 CDS gatA NC_010524.1 548162 549655 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 548162..549655 Leptothrix cholodnii SP-6 6162133 YP_001789547.1 CDS Lcho_0507 NC_010524.1 549655 549774 D hypothetical protein 549655..549774 Leptothrix cholodnii SP-6 6162300 YP_001789548.1 CDS Lcho_0508 NC_010524.1 549771 551069 D KEGG: mpt:Mpe_A2203 putative chaperone protein; putative chaperone protein 549771..551069 Leptothrix cholodnii SP-6 6162301 YP_001789549.1 CDS Lcho_0509 NC_010524.1 551092 553317 R KEGG: dar:Daro_4100 hypothetical protein; hypothetical protein complement(551092..553317) Leptothrix cholodnii SP-6 6162302 YP_001789550.1 CDS Lcho_0510 NC_010524.1 553422 554390 D KEGG: mpt:Mpe_A3644 hypothetical protein; hypothetical protein 553422..554390 Leptothrix cholodnii SP-6 6162303 YP_001789551.1 CDS Lcho_0511 NC_010524.1 554429 555658 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_1896 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 554429..555658 Leptothrix cholodnii SP-6 6162304 YP_001789552.1 CDS Lcho_0512 NC_010524.1 555767 556879 D PFAM: carbonic anhydrase; KEGG: dar:Daro_3922 carbonic anhydrase, eukaryotic; carbonate dehydratase 555767..556879 Leptothrix cholodnii SP-6 6162305 YP_001789553.1 CDS Lcho_0513 NC_010524.1 557202 557642 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 557202..557642 Leptothrix cholodnii SP-6 6162484 YP_001789554.1 CDS mraW NC_010524.1 557648 558625 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: mpt:Mpe_A0454 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 557648..558625 Leptothrix cholodnii SP-6 6162485 YP_001789555.1 CDS Lcho_0515 NC_010524.1 558622 558930 D PFAM: cell division protein FtsL; KEGG: pol:Bpro_1068 cell division protein, FtsL -like; cell division protein FtsL 558622..558930 Leptothrix cholodnii SP-6 6162486 YP_001789556.1 CDS Lcho_0516 NC_010524.1 558930 560774 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: mpt:Mpe_A0456 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 558930..560774 Leptothrix cholodnii SP-6 6162487 YP_001789557.1 CDS murE NC_010524.1 560774 562315 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 560774..562315 Leptothrix cholodnii SP-6 6162488 YP_001789558.1 CDS Lcho_0518 NC_010524.1 562312 563781 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mpt:Mpe_A0458 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 562312..563781 Leptothrix cholodnii SP-6 6162489 YP_001789559.1 CDS mraY NC_010524.1 563771 564952 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 563771..564952 Leptothrix cholodnii SP-6 6162860 YP_001789560.1 CDS Lcho_0520 NC_010524.1 564960 566813 D TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mpt:Mpe_A0460 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 564960..566813 Leptothrix cholodnii SP-6 6162861 YP_001789561.1 CDS Lcho_0521 NC_010524.1 566872 568140 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: mpt:Mpe_A0461 cell division protein FtsW; cell division protein FtsW 566872..568140 Leptothrix cholodnii SP-6 6162862 YP_001789562.1 CDS murG NC_010524.1 568137 569249 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 568137..569249 Leptothrix cholodnii SP-6 6162863 YP_001789563.1 CDS murC NC_010524.1 569246 570655 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 569246..570655 Leptothrix cholodnii SP-6 6162864 YP_001789564.1 CDS ddl NC_010524.1 570652 571641 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 570652..571641 Leptothrix cholodnii SP-6 6162865 YP_001789565.1 CDS Lcho_0525 NC_010524.1 571669 572472 D PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: mpt:Mpe_A0465 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 571669..572472 Leptothrix cholodnii SP-6 6161278 YP_001789566.1 CDS Lcho_0526 NC_010524.1 572509 573735 D PFAM: cell division protein FtsA; KEGG: mpt:Mpe_A0466 putative cell division protein FtsA; cell division protein FtsA 572509..573735 Leptothrix cholodnii SP-6 6161279 YP_001789567.1 CDS Lcho_0527 NC_010524.1 573889 575106 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: mpt:Mpe_A0467 cell division protein FtsZ; cell division protein FtsZ 573889..575106 Leptothrix cholodnii SP-6 6161280 YP_001789568.1 CDS lpxC NC_010524.1 575241 576176 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 575241..576176 Leptothrix cholodnii SP-6 6161281 YP_001789569.1 CDS Lcho_0529 NC_010524.1 576199 576372 D KEGG: mpt:Mpe_A0469 hypothetical protein; hypothetical protein 576199..576372 Leptothrix cholodnii SP-6 6161282 YP_001789570.1 CDS Lcho_0530 NC_010524.1 576416 578770 R KEGG: xcv:XCV1929 putative C-di-GMP phosphodiesterase or signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(576416..578770) Leptothrix cholodnii SP-6 6161283 YP_001789571.1 CDS ruvC NC_010524.1 578838 579389 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(578838..579389) Leptothrix cholodnii SP-6 6160748 YP_001789572.1 CDS purH NC_010524.1 579463 581070 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(579463..581070) Leptothrix cholodnii SP-6 6160749 YP_001789573.1 CDS Lcho_0533 NC_010524.1 581142 581378 R PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family; Fis family transcriptional regulator complement(581142..581378) Leptothrix cholodnii SP-6 6160750 YP_001789574.1 CDS Lcho_0534 NC_010524.1 581375 582415 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: mpt:Mpe_A0486 tRNA-dihydrouridine synthase B; NifR3 family TIM-barrel protein complement(581375..582415) Leptothrix cholodnii SP-6 6160751 YP_001789575.1 CDS Lcho_0535 NC_010524.1 582521 583003 D KEGG: mpt:Mpe_A0487 putative transmembrane protein; putative transmembrane protein 582521..583003 Leptothrix cholodnii SP-6 6160752 YP_001789576.1 CDS Lcho_0536 NC_010524.1 583104 584618 D PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: azo:azo3546 probable carboxypeptidase TAQ; carboxypeptidase Taq 583104..584618 Leptothrix cholodnii SP-6 6160753 YP_001789577.1 CDS Lcho_0537 NC_010524.1 584714 586636 R KEGG: pcr:Pcryo_1046 protein of unknown function DUF11; hypothetical protein complement(584714..586636) Leptothrix cholodnii SP-6 6161331 YP_001789578.1 CDS Lcho_0538 NC_010524.1 586655 586942 R KEGG: xau:Xaut_4604 hypothetical protein; hypothetical protein complement(586655..586942) Leptothrix cholodnii SP-6 6161332 YP_001789579.1 CDS Lcho_0539 NC_010524.1 587111 588022 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 587111..588022 Leptothrix cholodnii SP-6 6161333 YP_001789580.1 CDS Lcho_0540 NC_010524.1 588092 588661 D PFAM: protein of unknown function DUF820; KEGG: hha:Hhal_1924 protein of unknown function DUF820; hypothetical protein 588092..588661 Leptothrix cholodnii SP-6 6161334 YP_001789581.1 CDS Lcho_0541 NC_010524.1 588672 589373 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A0500 hypothetical protein; pyrimidine 5'-nucleotidase 588672..589373 Leptothrix cholodnii SP-6 6161335 YP_001789582.1 CDS slmA NC_010524.1 589373 590017 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 589373..590017 Leptothrix cholodnii SP-6 6161336 YP_001789583.1 CDS Lcho_0543 NC_010524.1 590059 590991 D PFAM: protein of unknown function DUF815; KEGG: ajs:Ajs_0798 protein of unknown function DUF815; hypothetical protein 590059..590991 Leptothrix cholodnii SP-6 6159807 YP_001789584.1 CDS Lcho_0544 NC_010524.1 590984 591484 D PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_2908 NUDIX hydrolase; NUDIX hydrolase 590984..591484 Leptothrix cholodnii SP-6 6159808 YP_001789585.1 CDS Lcho_0545 NC_010524.1 591501 591707 R PFAM: protein of unknown function DUF329; KEGG: ajs:Ajs_0800 protein of unknown function DUF329; hypothetical protein complement(591501..591707) Leptothrix cholodnii SP-6 6159809 YP_001789586.1 CDS Lcho_0546 NC_010524.1 591740 592495 R PFAM: protein of unknown function DUF1342; KEGG: mpt:Mpe_A0505 hypothetical protein; hypothetical protein complement(591740..592495) Leptothrix cholodnii SP-6 6159810 YP_001789587.1 CDS Lcho_0547 NC_010524.1 592576 593190 R KEGG: mpt:Mpe_A0506 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(592576..593190) Leptothrix cholodnii SP-6 6159811 YP_001789588.1 CDS Lcho_0548 NC_010524.1 593202 594149 R PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: mpt:Mpe_A0507 signal peptidase; peptidase A24A domain-containing protein complement(593202..594149) Leptothrix cholodnii SP-6 6159812 YP_001789589.1 CDS Lcho_0549 NC_010524.1 594158 595384 R PFAM: type II secretion system protein; KEGG: mpt:Mpe_A0508 pilus tip-associated protein; type II secretion system protein complement(594158..595384) Leptothrix cholodnii SP-6 6164124 YP_001789590.1 CDS Lcho_0550 NC_010524.1 595435 597159 R KEGG: mpt:Mpe_A0509 pilus biogenesis ATPase; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; type IV-A pilus assembly ATPase PilB complement(595435..597159) Leptothrix cholodnii SP-6 6164125 YP_001789591.1 CDS Lcho_0551 NC_010524.1 597526 599430 D molecular chaperone; heat shock protein 90 597526..599430 Leptothrix cholodnii SP-6 6164126 YP_001789592.1 CDS Lcho_0552 NC_010524.1 599447 600529 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(599447..600529) Leptothrix cholodnii SP-6 6164127 YP_001789593.1 CDS Lcho_0553 NC_010524.1 600561 601370 R KEGG: mpt:Mpe_A3159 hypothetical protein; hypothetical protein complement(600561..601370) Leptothrix cholodnii SP-6 6164128 YP_001789594.1 CDS Lcho_0554 NC_010524.1 601622 602323 R PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A3158 hypothetical protein; N-acetyltransferase GCN5 complement(601622..602323) Leptothrix cholodnii SP-6 6164129 YP_001789595.1 CDS Lcho_0555 NC_010524.1 602524 603075 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mpt:Mpe_A0111 single-strand binding protein; ssDNA-binding protein complement(602524..603075) Leptothrix cholodnii SP-6 6163358 YP_001789596.1 CDS Lcho_0556 NC_010524.1 603234 605213 D KEGG: mpt:Mpe_A0108 putative ATP-dependent DNA helicase protein; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 603234..605213 Leptothrix cholodnii SP-6 6163359 YP_001789597.1 CDS Lcho_0557 NC_010524.1 605340 606557 D PFAM: Patatin; KEGG: mpt:Mpe_A0078 alpha-beta hydrolase superfamily esterase-like protein; patatin 605340..606557 Leptothrix cholodnii SP-6 6163360 YP_001789598.1 CDS Lcho_0558 NC_010524.1 606559 607404 R hypothetical protein complement(606559..607404) Leptothrix cholodnii SP-6 6163361 YP_001789599.1 CDS Lcho_0559 NC_010524.1 607453 607950 R KEGG: mpt:Mpe_A0107 hypothetical protein; hypothetical protein complement(607453..607950) Leptothrix cholodnii SP-6 6163362 YP_001789600.1 CDS Lcho_0560 NC_010524.1 607993 609234 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: rfr:Rfer_2975 acetate kinase; acetate kinase complement(607993..609234) Leptothrix cholodnii SP-6 6163363 YP_001789601.1 CDS Lcho_0561 NC_010524.1 609487 610506 D PFAM: basic membrane lipoprotein; KEGG: aha:AHA_0219 membrane lipoprotein; basic membrane lipoprotein 609487..610506 Leptothrix cholodnii SP-6 6162653 YP_001789602.1 CDS Lcho_0562 NC_010524.1 610517 612157 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_0633 ABC transporter related; ABC transporter-like protein 610517..612157 Leptothrix cholodnii SP-6 6162654 YP_001789603.1 CDS Lcho_0563 NC_010524.1 612154 613257 D PFAM: inner-membrane translocator; KEGG: mes:Meso_3653 inner-membrane translocator; inner-membrane translocator 612154..613257 Leptothrix cholodnii SP-6 6162655 YP_001789604.1 CDS Lcho_0564 NC_010524.1 613250 614224 D PFAM: inner-membrane translocator; KEGG: atc:AGR_C_207 sugar ABC transporter, permease protein; inner-membrane translocator 613250..614224 Leptothrix cholodnii SP-6 6162656 YP_001789605.1 CDS Lcho_0565 NC_010524.1 614257 615777 R PFAM: Aldehyde Dehydrogenase_; KEGG: rsh:Rsph17029_2952 aldehyde dehydrogenase; aldehyde dehydrogenase complement(614257..615777) Leptothrix cholodnii SP-6 6162657 YP_001789606.1 CDS Lcho_0566 NC_010524.1 615808 616965 R PFAM: Saccharopine dehydrogenase; KEGG: pol:Bpro_4331 saccharopine dehydrogenase; saccharopine dehydrogenase complement(615808..616965) Leptothrix cholodnii SP-6 6162658 YP_001789607.1 CDS Lcho_0567 NC_010524.1 617211 617726 D KEGG: afw:Anae109_0266 response regulator receiver; hypothetical protein 617211..617726 Leptothrix cholodnii SP-6 6163183 YP_001789608.1 CDS Lcho_0568 NC_010524.1 617723 618043 D hypothetical protein 617723..618043 Leptothrix cholodnii SP-6 6163184 YP_001789609.1 CDS Lcho_0569 NC_010524.1 618054 618806 R KEGG: bbt:BBta_6384 hypothetical protein; hypothetical protein complement(618054..618806) Leptothrix cholodnii SP-6 6163185 YP_001789610.1 CDS Lcho_0570 NC_010524.1 618937 619554 D PFAM: protein of unknown function DUF847; KEGG: xau:Xaut_3175 protein of unknown function DUF847; hypothetical protein 618937..619554 Leptothrix cholodnii SP-6 6163186 YP_001789611.1 CDS Lcho_0571 NC_010524.1 619586 621280 D KEGG: sse:Ssed_3749 hypothetical protein; hypothetical protein 619586..621280 Leptothrix cholodnii SP-6 6163187 YP_001789612.1 CDS Lcho_0572 NC_010524.1 621758 622732 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A0515 hypothetical protein; hypothetical protein 621758..622732 Leptothrix cholodnii SP-6 6160141 YP_001789613.1 CDS Lcho_0573 NC_010524.1 622738 623349 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(622738..623349) Leptothrix cholodnii SP-6 6160142 YP_001789614.1 CDS Lcho_0574 NC_010524.1 623452 625197 D TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: mpt:Mpe_A0517 prolyl-tRNA synthetase; prolyl-tRNA synthetase 623452..625197 Leptothrix cholodnii SP-6 6160143 YP_001789615.1 CDS Lcho_0575 NC_010524.1 625278 625949 D PFAM: Lytic transglycosylase catalytic; KEGG: aav:Aave_3669 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 625278..625949 Leptothrix cholodnii SP-6 6160144 YP_001789616.1 CDS Lcho_0576 NC_010524.1 625975 626553 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: mpt:Mpe_A0519 putative flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(625975..626553) Leptothrix cholodnii SP-6 6160145 YP_001789617.1 CDS Lcho_0577 NC_010524.1 626558 626869 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rso:RSc2904 hypothetical protein; glutaredoxin-like protein complement(626558..626869) Leptothrix cholodnii SP-6 6160146 YP_001789618.1 CDS Lcho_0578 NC_010524.1 626993 627673 R KEGG: mpt:Mpe_A0521 hypothetical protein; hypothetical protein complement(626993..627673) Leptothrix cholodnii SP-6 6159948 YP_001789619.1 CDS Lcho_0579 NC_010524.1 627834 628676 R TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: vei:Veis_1555 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase complement(627834..628676) Leptothrix cholodnii SP-6 6159949 YP_001789620.1 CDS Lcho_0580 NC_010524.1 628673 629755 R TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mpt:Mpe_A0523 peptide chain release factor 1; peptide chain release factor 1 complement(628673..629755) Leptothrix cholodnii SP-6 6159950 YP_001789621.1 CDS hemA NC_010524.1 629854 631161 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(629854..631161) Leptothrix cholodnii SP-6 6159951 YP_001789622.1 CDS Lcho_0582 NC_010524.1 631292 631573 D KEGG: mpt:Mpe_A0525 hypothetical protein; hypothetical protein 631292..631573 Leptothrix cholodnii SP-6 6159952 YP_001789623.1 CDS Lcho_0583 NC_010524.1 631600 632523 R PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0515 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(631600..632523) Leptothrix cholodnii SP-6 6159953 YP_001789624.1 CDS Lcho_0584 NC_010524.1 632534 633943 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(632534..633943) Leptothrix cholodnii SP-6 6159954 YP_001789625.1 CDS Lcho_0585 NC_010524.1 634347 634991 D TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: mpt:Mpe_A0663 urease accessory protein; urease accessory protein UreG 634347..634991 Leptothrix cholodnii SP-6 6159887 YP_001789626.1 CDS Lcho_0586 NC_010524.1 634998 635207 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSc0349 putative bacterioferritin-associated ferredoxin protein; BFD/(2Fe-2S)-binding domain-containing protein complement(634998..635207) Leptothrix cholodnii SP-6 6159888 YP_001789627.1 CDS Lcho_0587 NC_010524.1 635341 635817 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin; bacterioferritin complement(635341..635817) Leptothrix cholodnii SP-6 6159889 YP_001789628.1 CDS Lcho_0588 NC_010524.1 635885 636907 R PFAM: peptidase S49; KEGG: mpt:Mpe_A0660 putative protease transmembrane protein; peptidase S49 complement(635885..636907) Leptothrix cholodnii SP-6 6159890 YP_001789629.1 CDS Lcho_0589 NC_010524.1 636960 637340 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: mpt:Mpe_A0659 hypothetical protein; Rieske (2Fe-2S) domain-containing protein complement(636960..637340) Leptothrix cholodnii SP-6 6159891 YP_001789630.1 CDS Lcho_0590 NC_010524.1 637381 638040 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A0658 haloacid dehalogenase-like hydrolase; HAD family hydrolase complement(637381..638040) Leptothrix cholodnii SP-6 6159699 YP_001789631.1 CDS Lcho_0591 NC_010524.1 638060 639028 R KEGG: mpt:Mpe_A0657 putative ribosomal large subunit pseudouridine synthase C protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(638060..639028) Leptothrix cholodnii SP-6 6159700 YP_001789632.1 CDS Lcho_0592 NC_010524.1 639881 643057 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: mpt:Mpe_A0656 putative ribonuclease E (RNase E) protein; ribonuclease 639881..643057 Leptothrix cholodnii SP-6 6159701 YP_001789633.1 CDS Lcho_0593 NC_010524.1 643161 644264 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: mpt:Mpe_A0655 glycosyl hydrolase, family 3; beta-N-acetylhexosaminidase complement(643161..644264) Leptothrix cholodnii SP-6 6159702 YP_001789634.1 CDS acpS NC_010524.1 644265 644663 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(644265..644663) Leptothrix cholodnii SP-6 6159703 YP_001789635.1 CDS Lcho_0595 NC_010524.1 644660 645466 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(644660..645466) Leptothrix cholodnii SP-6 6159704 YP_001789636.1 CDS Lcho_0596 NC_010524.1 645522 646292 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: mpt:Mpe_A0652 putative DNA repair protein RecO; DNA repair protein RecO complement(645522..646292) Leptothrix cholodnii SP-6 6160227 YP_001789637.1 CDS Lcho_0597 NC_010524.1 646296 647342 R TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: mpt:Mpe_A0651 putative GTP-binding protein; GTP-binding protein Era complement(646296..647342) Leptothrix cholodnii SP-6 6160228 YP_001789638.1 CDS Lcho_0598 NC_010524.1 647339 648025 R PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: mpt:Mpe_A0650 ribonuclease III; ribonuclease III complement(647339..648025) Leptothrix cholodnii SP-6 6160229 YP_001789639.1 CDS Lcho_0599 NC_010524.1 648054 648425 R KEGG: mpt:Mpe_A0649 hypothetical protein; hypothetical protein complement(648054..648425) Leptothrix cholodnii SP-6 6160230 YP_001789640.1 CDS Lcho_0600 NC_010524.1 648471 649439 R KEGG: mpt:Mpe_A0648 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(648471..649439) Leptothrix cholodnii SP-6 6160231 YP_001789641.1 CDS Lcho_0601 NC_010524.1 649456 651264 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(649456..651264) Leptothrix cholodnii SP-6 6160232 YP_001789642.1 CDS Lcho_0602 NC_010524.1 651711 653261 R KEGG: mpt:Mpe_A0645 subfamily S1C unassigned peptidase; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(651711..653261) Leptothrix cholodnii SP-6 6159880 YP_001789643.1 CDS Lcho_0603 NC_010524.1 653388 654551 R KEGG: mpt:Mpe_A0644 putative sigma E factor regulatory protein; putative sigma E regulatory protein, MucB/RseB complement(653388..654551) Leptothrix cholodnii SP-6 6159881 YP_001789644.1 CDS Lcho_0604 NC_010524.1 654548 655195 R PFAM: Anti sigma-E protein RseA family protein; KEGG: mpt:Mpe_A0643 putative transmembrane sigma-E factor negative regulatory transcription regulator protein; anti sigma-E protein RseA complement(654548..655195) Leptothrix cholodnii SP-6 6159882 YP_001789645.1 CDS Lcho_0605 NC_010524.1 655221 655829 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(655221..655829) Leptothrix cholodnii SP-6 6159883 YP_001789646.1 CDS Lcho_0606 NC_010524.1 655819 656313 R KEGG: mpt:Mpe_A0641 hypothetical protein; hypothetical protein complement(655819..656313) Leptothrix cholodnii SP-6 6159884 YP_001789647.1 CDS Lcho_0607 NC_010524.1 656341 657585 R TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: mpt:Mpe_A0640 putative 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(656341..657585) Leptothrix cholodnii SP-6 6159885 YP_001789648.1 CDS acpP NC_010524.1 657633 657872 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(657633..657872) Leptothrix cholodnii SP-6 6159855 YP_001789649.1 CDS Lcho_0609 NC_010524.1 658016 658768 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A0638 3-oxoacyl-(acyl-carrier protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(658016..658768) Leptothrix cholodnii SP-6 6159856 YP_001789650.1 CDS Lcho_0610 NC_010524.1 658777 659715 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mpt:Mpe_A0637 putative malonyl CoA-(acyl-carrier-protein) transacylase; malonyl CoA-acyl carrier protein transacylase complement(658777..659715) Leptothrix cholodnii SP-6 6159857 YP_001789651.1 CDS Lcho_0611 NC_010524.1 659792 660784 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(659792..660784) Leptothrix cholodnii SP-6 6159858 YP_001789652.1 CDS Lcho_0612 NC_010524.1 660781 661872 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(660781..661872) Leptothrix cholodnii SP-6 6159859 YP_001789653.1 CDS rpmF NC_010524.1 662026 662208 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(662026..662208) Leptothrix cholodnii SP-6 6159860 YP_001789654.1 CDS Lcho_0614 NC_010524.1 662303 662875 R PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 protein of unknown function DUF177; hypothetical protein complement(662303..662875) Leptothrix cholodnii SP-6 6160097 YP_001789655.1 CDS Lcho_0615 NC_010524.1 662930 663547 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: mpt:Mpe_A0633 hypothetical protein; maf protein 662930..663547 Leptothrix cholodnii SP-6 6160098 YP_001789656.1 CDS Lcho_0616 NC_010524.1 663537 664334 D KEGG: mpt:Mpe_A0632 putative transmembrane protein; putative transmembrane protein 663537..664334 Leptothrix cholodnii SP-6 6160099 YP_001789657.1 CDS Lcho_0617 NC_010524.1 664370 665809 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mpt:Mpe_A0631 putative ATP-dependent RNA helicase 2; DEAD/DEAH box helicase complement(664370..665809) Leptothrix cholodnii SP-6 6160100 YP_001789658.1 CDS Lcho_0618 NC_010524.1 665820 666941 R PFAM: glycosyl transferase family 4; KEGG: mpt:Mpe_A0630 putative undecaprenyl phosphate N-acetylglucosaminyltransferase; glycosyl transferase family protein complement(665820..666941) Leptothrix cholodnii SP-6 6160101 YP_001789659.1 CDS Lcho_0619 NC_010524.1 667197 668264 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: eba:ebA2278 putative dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 667197..668264 Leptothrix cholodnii SP-6 6160102 YP_001789660.1 CDS Lcho_0620 NC_010524.1 668280 669170 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dac:Daci_1276 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 668280..669170 Leptothrix cholodnii SP-6 6160184 YP_001789661.1 CDS Lcho_0621 NC_010524.1 669198 670079 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mpt:Mpe_A0626 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 669198..670079 Leptothrix cholodnii SP-6 6160185 YP_001789662.1 CDS Lcho_0622 NC_010524.1 670102 670653 D KEGG: rme:Rmet_2732 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 670102..670653 Leptothrix cholodnii SP-6 6160186 YP_001789663.1 CDS Lcho_0623 NC_010524.1 670723 672168 D KEGG: mpt:Mpe_A0629 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 670723..672168 Leptothrix cholodnii SP-6 6160187 YP_001789664.1 CDS Lcho_0624 NC_010524.1 672652 673578 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH00763 GDP-L-fucose synthase protein; NAD-dependent epimerase/dehydratase 672652..673578 Leptothrix cholodnii SP-6 6160188 YP_001789665.1 CDS Lcho_0625 NC_010524.1 673587 673814 D hypothetical protein 673587..673814 Leptothrix cholodnii SP-6 6160189 YP_001789666.1 CDS Lcho_0626 NC_010524.1 673811 674074 D KEGG: cch:Cag_0660 hypothetical protein; hypothetical protein 673811..674074 Leptothrix cholodnii SP-6 6159969 YP_001789667.1 CDS Lcho_0627 NC_010524.1 674216 675340 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpt:Mpe_A2731 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 674216..675340 Leptothrix cholodnii SP-6 6159970 YP_001789668.1 CDS Lcho_0628 NC_010524.1 675375 675965 R PFAM: protein of unknown function DUF820; KEGG: pna:Pnap_0294 protein of unknown function DUF820; hypothetical protein complement(675375..675965) Leptothrix cholodnii SP-6 6159971 YP_001789669.1 CDS Lcho_0629 NC_010524.1 676061 677287 D PFAM: glycosyl transferase group 1; KEGG: cvi:CV_0515 probable glycosyltransferase; group 1 glycosyl transferase 676061..677287 Leptothrix cholodnii SP-6 6159972 YP_001789670.1 CDS Lcho_0630 NC_010524.1 677323 677703 R PFAM: PilT protein domain protein; KEGG: pna:Pnap_4802 PilT protein domain protein; PilT domain-containing protein complement(677323..677703) Leptothrix cholodnii SP-6 6159973 YP_001789671.1 CDS Lcho_0631 NC_010524.1 677700 677906 R KEGG: pna:Pnap_4803 hypothetical protein; hypothetical protein complement(677700..677906) Leptothrix cholodnii SP-6 6159974 YP_001789672.1 CDS Lcho_0632 NC_010524.1 678225 682472 D PFAM: Hemolysin-type calcium-binding region; Na-Ca exchanger/integrin-beta4; KEGG: ret:RHE_CH00724 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein; Na-Ca exchanger/integrin-beta4 678225..682472 Leptothrix cholodnii SP-6 6160178 YP_001789673.1 CDS Lcho_0633 NC_010524.1 682544 684346 R KEGG: cpy:Cphy_0396 hypothetical protein; hypothetical protein complement(682544..684346) Leptothrix cholodnii SP-6 6160179 YP_001789674.1 CDS Lcho_0634 NC_010524.1 684508 685224 R KEGG: pgi:PG0119 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase complement(684508..685224) Leptothrix cholodnii SP-6 6160180 YP_001789675.1 CDS Lcho_0635 NC_010524.1 685212 686423 R PFAM: glycosyl transferase group 1; KEGG: azo:azo3272 glycosyltransferase; group 1 glycosyl transferase complement(685212..686423) Leptothrix cholodnii SP-6 6160181 YP_001789676.1 CDS Lcho_0636 NC_010524.1 686416 687708 R KEGG: saz:Sama_2255 hypothetical protein; hypothetical protein complement(686416..687708) Leptothrix cholodnii SP-6 6160182 YP_001789677.1 CDS Lcho_0637 NC_010524.1 687723 689129 R PFAM: polysaccharide biosynthesis protein; KEGG: mmw:Mmwyl1_0834 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(687723..689129) Leptothrix cholodnii SP-6 6160183 YP_001789678.1 CDS Lcho_0638 NC_010524.1 689126 690256 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(689126..690256) Leptothrix cholodnii SP-6 6161902 YP_001789679.1 CDS Lcho_0639 NC_010524.1 690253 690819 R PFAM: transferase hexapeptide repeat containing protein; KEGG: sun:SUN_1549 hypothetical protein; hexapaptide repeat-containing transferase complement(690253..690819) Leptothrix cholodnii SP-6 6161903 YP_001789680.1 CDS Lcho_0640 NC_010524.1 690819 691871 R catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase complement(690819..691871) Leptothrix cholodnii SP-6 6161904 YP_001789681.1 CDS Lcho_0641 NC_010524.1 691929 693212 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: pau:PA14_23380 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; nucleotide sugar dehydrogenase complement(691929..693212) Leptothrix cholodnii SP-6 6161905 YP_001789682.1 CDS Lcho_0642 NC_010524.1 693209 694291 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: esa:ESA_03772 hypothetical protein; UDP-N-acetylglucosamine 2-epimerase complement(693209..694291) Leptothrix cholodnii SP-6 6161906 YP_001789683.1 CDS Lcho_0643 NC_010524.1 694396 695592 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: rfr:Rfer_1234 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein complement(694396..695592) Leptothrix cholodnii SP-6 6161907 YP_001789684.1 CDS Lcho_0644 NC_010524.1 695589 695795 R hypothetical protein complement(695589..695795) Leptothrix cholodnii SP-6 6161999 YP_001789685.1 CDS Lcho_0645 NC_010524.1 696044 697177 R KEGG: pna:Pnap_4284 hypothetical protein; hypothetical protein complement(696044..697177) Leptothrix cholodnii SP-6 6162000 YP_001789686.1 CDS Lcho_0646 NC_010524.1 697323 697622 D PFAM: DNA polymerase beta domain protein region; KEGG: aeh:Mlg_0863 DNA polymerase, beta domain protein region; DNA polymerase subunit beta 697323..697622 Leptothrix cholodnii SP-6 6162001 YP_001789687.1 CDS Lcho_0647 NC_010524.1 697619 698101 D KEGG: aeh:Mlg_0864 hypothetical protein; hypothetical protein 697619..698101 Leptothrix cholodnii SP-6 6162002 YP_001789688.1 CDS Lcho_0648 NC_010524.1 698132 700471 R PFAM: polysaccharide export protein; KEGG: bte:BTH_II1986 polysaccharide biosynthesis protein, putative; polysaccharide export protein complement(698132..700471) Leptothrix cholodnii SP-6 6162003 YP_001789689.1 CDS Lcho_0649 NC_010524.1 701460 704297 D PFAM: multicopper oxidase type 2; KEGG: ppf:Pput_2532 multicopper oxidase, type 2; multicopper oxidase type 2 701460..704297 Leptothrix cholodnii SP-6 6162004 YP_001789690.1 CDS Lcho_0650 NC_010524.1 704383 705405 D PFAM: cytochrome c class I; electron transport protein SCO1/SenC; KEGG: pfo:Pfl_2002 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 704383..705405 Leptothrix cholodnii SP-6 6163396 YP_001789691.1 CDS Lcho_0651 NC_010524.1 705395 707284 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: mpt:Mpe_A2628 chorismate binding enzyme; para-aminobenzoate synthase subunit I complement(705395..707284) Leptothrix cholodnii SP-6 6163397 YP_001789692.1 CDS Lcho_0652 NC_010524.1 707309 708229 R KEGG: mpt:Mpe_A2611 ATP:dephospho-CoA triphosphoribosyl transferase; ATP:dephospho-CoA triphosphoribosyl transferase complement(707309..708229) Leptothrix cholodnii SP-6 6163398 YP_001789693.1 CDS Lcho_0653 NC_010524.1 708666 709055 D PFAM: protein of unknown function DUF583; KEGG: xcb:XC_0499 hypothetical protein; hypothetical protein 708666..709055 Leptothrix cholodnii SP-6 6163399 YP_001789694.1 CDS Lcho_0654 NC_010524.1 709052 709705 D hypothetical protein 709052..709705 Leptothrix cholodnii SP-6 6163400 YP_001789695.1 CDS Lcho_0655 NC_010524.1 709752 712001 D KEGG: lma:LmjF35.0290 hypothetical protein, conserved; hypothetical protein 709752..712001 Leptothrix cholodnii SP-6 6163401 YP_001789696.1 CDS Lcho_0656 NC_010524.1 712032 712568 D TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; KEGG: noc:Noc_0133 conserved hypothetical ATP binding protein; small GTP-binding protein 712032..712568 Leptothrix cholodnii SP-6 6163769 YP_001789697.1 CDS Lcho_0657 NC_010524.1 712636 713274 D KEGG: noc:Noc_0134 hypothetical protein; hypothetical protein 712636..713274 Leptothrix cholodnii SP-6 6163770 YP_001789698.1 CDS Lcho_0658 NC_010524.1 713337 713699 D PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7; roadblock/LC7 family protein 713337..713699 Leptothrix cholodnii SP-6 6163771 YP_001789699.1 CDS Lcho_0659 NC_010524.1 713725 714219 D KEGG: pna:Pnap_2812 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 713725..714219 Leptothrix cholodnii SP-6 6163772 YP_001789700.1 CDS Lcho_0660 NC_010524.1 714216 714962 D KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component; phosphate/phosphonate ABC transporter periplasmic protein 714216..714962 Leptothrix cholodnii SP-6 6163773 YP_001789701.1 CDS Lcho_0661 NC_010524.1 715010 716188 D KEGG: lma:LmjF35.0290 hypothetical protein, conserved; hypothetical protein 715010..716188 Leptothrix cholodnii SP-6 6163774 YP_001789702.1 CDS Lcho_0662 NC_010524.1 716216 717049 R KEGG: pmy:Pmen_0549 sporulation domain protein; hypothetical protein complement(716216..717049) Leptothrix cholodnii SP-6 6163895 YP_001789703.1 CDS Lcho_0663 NC_010524.1 717042 718265 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: abo:ABO_1476 ammonium transporter, putative; ammonium transporter complement(717042..718265) Leptothrix cholodnii SP-6 6163896 YP_001789704.1 CDS Lcho_0664 NC_010524.1 718666 719571 R TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mpt:Mpe_A1132 cysteine synthase B; cysteine synthase B complement(718666..719571) Leptothrix cholodnii SP-6 6163897 YP_001789705.1 CDS Lcho_0665 NC_010524.1 719852 720454 D PFAM: Rhomboid family protein; KEGG: mpt:Mpe_A1130 integral membrane protein; rhomboid family protein 719852..720454 Leptothrix cholodnii SP-6 6163899 YP_001789706.1 CDS Lcho_0666 NC_010524.1 720530 721684 D PFAM: PDZ/DHR/GLGF domain protein; KEGG: mpt:Mpe_A1129 putative serine protease; PDZ/DHR/GLGF domain-containing protein 720530..721684 Leptothrix cholodnii SP-6 6163900 YP_001789707.1 CDS Lcho_0667 NC_010524.1 721705 722673 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: mpt:Mpe_A1128 putative oxidoreductase protein; NAD-dependent epimerase/dehydratase complement(721705..722673) Leptothrix cholodnii SP-6 6163859 YP_001789708.1 CDS Lcho_0668 NC_010524.1 722757 723788 D catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 722757..723788 Leptothrix cholodnii SP-6 6163860 YP_001789709.1 CDS rpsT NC_010524.1 723858 724160 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(723858..724160) Leptothrix cholodnii SP-6 6163861 YP_001789710.1 CDS Lcho_0670 NC_010524.1 724316 725878 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: mpt:Mpe_A3026 putative transmembrane protein; integral membrane protein MviN 724316..725878 Leptothrix cholodnii SP-6 6163862 YP_001789711.1 CDS Lcho_0671 NC_010524.1 725900 726772 D KEGG: mpt:Mpe_A3024 hypothetical protein; hypothetical protein 725900..726772 Leptothrix cholodnii SP-6 6163863 YP_001789712.1 CDS Lcho_0672 NC_010524.1 726837 727898 D PFAM: protein of unknown function UPF0118; KEGG: mpt:Mpe_A3023 putative permease transmembrane transport protein; hypothetical protein 726837..727898 Leptothrix cholodnii SP-6 6163864 YP_001789713.1 CDS Lcho_0673 NC_010524.1 727929 728606 D KEGG: mpt:Mpe_A3022 hypothetical protein; TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; SMART: AAA ATPase; DnaA regulatory inactivator Hda 727929..728606 Leptothrix cholodnii SP-6 6160337 YP_001789714.1 CDS Lcho_0674 NC_010524.1 728603 729286 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A3021 hypothetical protein; HAD family hydrolase 728603..729286 Leptothrix cholodnii SP-6 6160338 YP_001789715.1 CDS Lcho_0675 NC_010524.1 729283 730779 D KEGG: mpt:Mpe_A3020 putative polynucleotide adenylyltransferase protein; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 729283..730779 Leptothrix cholodnii SP-6 6160339 YP_001789716.1 CDS Lcho_0676 NC_010524.1 730799 731287 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: mpt:Mpe_A3019 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 730799..731287 Leptothrix cholodnii SP-6 6160340 YP_001789717.1 CDS Lcho_0677 NC_010524.1 731467 732114 D PFAM: protein of unknown function DUF47; KEGG: mpt:Mpe_A3016 hypothetical protein; hypothetical protein 731467..732114 Leptothrix cholodnii SP-6 6160341 YP_001789718.1 CDS Lcho_0678 NC_010524.1 732128 733138 D PFAM: phosphate transporter; KEGG: dac:Daci_5348 phosphate transporter; phosphate transporter 732128..733138 Leptothrix cholodnii SP-6 6160342 YP_001789719.1 CDS Lcho_0679 NC_010524.1 733125 733610 R KEGG: mpt:Mpe_A1102 hypothetical protein; hypothetical protein complement(733125..733610) Leptothrix cholodnii SP-6 6160798 YP_001789720.1 CDS Lcho_0680 NC_010524.1 733607 734167 R PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A1103 putative phosphinothricin acetyltransferase; N-acetyltransferase GCN5 complement(733607..734167) Leptothrix cholodnii SP-6 6160799 YP_001789721.1 CDS rpsP NC_010524.1 734392 734652 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 734392..734652 Leptothrix cholodnii SP-6 6160800 YP_001789722.1 CDS rimM NC_010524.1 734710 735294 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 734710..735294 Leptothrix cholodnii SP-6 6160801 YP_001789723.1 CDS trmD NC_010524.1 735328 736077 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 735328..736077 Leptothrix cholodnii SP-6 6160802 YP_001789724.1 CDS rplS NC_010524.1 736154 736507 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 736154..736507 Leptothrix cholodnii SP-6 6160803 YP_001789725.1 CDS Lcho_0685 NC_010524.1 736589 737296 D PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1108 hypothetical protein; NUDIX hydrolase 736589..737296 Leptothrix cholodnii SP-6 6164093 YP_001789726.1 CDS Lcho_0686 NC_010524.1 737358 738347 D KEGG: mpt:Mpe_A1109 putative cobalamin biosynthesis transmembrane protein; putative cobalamin biosynthesis transmembrane protein 737358..738347 Leptothrix cholodnii SP-6 6164094 YP_001789727.1 CDS Lcho_0687 NC_010524.1 738376 739101 R PFAM: protein of unknown function DUF599; KEGG: mpt:Mpe_A2884 hypothetical protein; hypothetical protein complement(738376..739101) Leptothrix cholodnii SP-6 6164095 YP_001789728.1 CDS Lcho_0688 NC_010524.1 739125 739835 R PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: mpt:Mpe_A2889 putative pirin-like protein; pirin domain-containing protein complement(739125..739835) Leptothrix cholodnii SP-6 6164096 YP_001789729.1 CDS Lcho_0689 NC_010524.1 739946 740944 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A2890 putative transcriptional regulator transcription regulator protein; LysR family transcriptional regulator 739946..740944 Leptothrix cholodnii SP-6 6164097 YP_001789730.1 CDS Lcho_0690 NC_010524.1 740952 741854 D PFAM: glutamyl-tRNA synthetase class Ic; KEGG: mpt:Mpe_A2900 glutamate--tRNA ligase; glutamate--tRNA ligase 740952..741854 Leptothrix cholodnii SP-6 6164098 YP_001789731.1 CDS Lcho_0691 NC_010524.1 741988 742347 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pna:Pnap_1619 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 741988..742347 Leptothrix cholodnii SP-6 6160817 YP_001789732.1 CDS Lcho_0692 NC_010524.1 742538 743833 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(742538..743833) Leptothrix cholodnii SP-6 6160819 YP_001789733.1 CDS ispH NC_010524.1 743928 744911 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(743928..744911) Leptothrix cholodnii SP-6 6160820 YP_001789734.1 CDS Lcho_0694 NC_010524.1 744911 745363 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mpt:Mpe_A2694 putative FkpB-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(744911..745363) Leptothrix cholodnii SP-6 6160821 YP_001789735.1 CDS radC NC_010524.1 745438 746106 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 745438..746106 Leptothrix cholodnii SP-6 6160822 YP_001789736.1 CDS Lcho_0696 NC_010524.1 746133 746813 D PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2; Smr protein/MutS2 746133..746813 Leptothrix cholodnii SP-6 6163428 YP_001789737.1 CDS Lcho_0697 NC_010524.1 746844 747272 R PFAM: globin; KEGG: ajs:Ajs_3454 globin; globin complement(746844..747272) Leptothrix cholodnii SP-6 6163429 YP_001789738.1 CDS Lcho_0698 NC_010524.1 747327 748148 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ajs:Ajs_2277 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(747327..748148) Leptothrix cholodnii SP-6 6163430 YP_001789739.1 CDS Lcho_0699 NC_010524.1 748145 748825 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mpt:Mpe_A2699 GGDEF domain containing protein; diguanylate cyclase complement(748145..748825) Leptothrix cholodnii SP-6 6163431 YP_001789740.1 CDS Lcho_0700 NC_010524.1 749221 750075 D PFAM: MCP methyltransferase CheR-type; KEGG: mpt:Mpe_A2700 methylase of methyl-accepting chemotaxis protein; CheR-type MCP methyltransferase 749221..750075 Leptothrix cholodnii SP-6 6163432 YP_001789741.1 CDS Lcho_0701 NC_010524.1 750124 750783 D stimulates methylation of MCP proteins; catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 750124..750783 Leptothrix cholodnii SP-6 6163433 YP_001789742.1 CDS Lcho_0702 NC_010524.1 750830 751984 D PFAM: CheB methylesterase; response regulator receiver; KEGG: mpt:Mpe_A2702 chemotaxis response regulator; response regulator receiver modulated CheB methylesterase 750830..751984 Leptothrix cholodnii SP-6 6163750 YP_001789743.1 CDS Lcho_0703 NC_010524.1 752008 753381 R KEGG: ajs:Ajs_0921 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(752008..753381) Leptothrix cholodnii SP-6 6163751 YP_001789744.1 CDS Lcho_0704 NC_010524.1 753389 754027 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(753389..754027) Leptothrix cholodnii SP-6 6163752 YP_001789745.1 CDS Lcho_0705 NC_010524.1 754030 754755 R KEGG: mpt:Mpe_A2705 tRNA nucleotidyltransferase; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH complement(754030..754755) Leptothrix cholodnii SP-6 6163753 YP_001789746.1 CDS Lcho_0706 NC_010524.1 754875 755789 R PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: mpt:Mpe_A2706 hypothetical protein; protein serine/threonine phosphatase complement(754875..755789) Leptothrix cholodnii SP-6 6163754 YP_001789747.1 CDS Lcho_0707 NC_010524.1 755835 756713 R SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mpt:Mpe_A2707 putative protein kinase; serine/threonine protein kinase complement(755835..756713) Leptothrix cholodnii SP-6 6163755 YP_001789748.1 CDS Lcho_0708 NC_010524.1 756832 757740 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: mpt:Mpe_A2708 hypothetical protein; hypothetical protein 756832..757740 Leptothrix cholodnii SP-6 6163541 YP_001789749.1 CDS Lcho_0709 NC_010524.1 758111 759427 R KEGG: dac:Daci_2036 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase complement(758111..759427) Leptothrix cholodnii SP-6 6163542 YP_001789750.1 CDS Lcho_0710 NC_010524.1 759456 759737 R KEGG: bxe:Bxe_C0660 putative hydrolase; putative hydrolase complement(759456..759737) Leptothrix cholodnii SP-6 6163543 YP_001789751.1 CDS Lcho_0711 NC_010524.1 759737 760570 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3546 uncharacterized protein UPF0065; hypothetical protein complement(759737..760570) Leptothrix cholodnii SP-6 6163544 YP_001789752.1 CDS Lcho_0712 NC_010524.1 760578 761552 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_4275 hypothetical protein; hypothetical protein complement(760578..761552) Leptothrix cholodnii SP-6 6163545 YP_001789753.1 CDS Lcho_0713 NC_010524.1 761568 762644 R KEGG: dac:Daci_5627 porin, gram-negative type; porin complement(761568..762644) Leptothrix cholodnii SP-6 6163546 YP_001789754.1 CDS Lcho_0714 NC_010524.1 762786 763709 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(762786..763709) Leptothrix cholodnii SP-6 6163090 YP_001789755.1 CDS Lcho_0715 NC_010524.1 763732 764703 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B0346 probable extra-cytoplasmic solute receptor; hypothetical protein complement(763732..764703) Leptothrix cholodnii SP-6 6163091 YP_001789756.1 CDS Lcho_0716 NC_010524.1 764757 765821 R KEGG: acr:Acry_2893 hypothetical protein; hypothetical protein complement(764757..765821) Leptothrix cholodnii SP-6 6163092 YP_001789757.1 CDS Lcho_0717 NC_010524.1 765827 766750 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dac:Daci_4276 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(765827..766750) Leptothrix cholodnii SP-6 6163093 YP_001789758.1 CDS Lcho_0718 NC_010524.1 766747 767445 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase complement(766747..767445) Leptothrix cholodnii SP-6 6163094 YP_001789759.1 CDS Lcho_0719 NC_010524.1 767523 768503 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4610 hypothetical protein; hypothetical protein complement(767523..768503) Leptothrix cholodnii SP-6 6163095 YP_001789760.1 CDS Lcho_0720 NC_010524.1 768631 769527 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2331 transcriptional regulator, LysR family; LysR family transcriptional regulator 768631..769527 Leptothrix cholodnii SP-6 6162957 YP_001789761.1 CDS Lcho_0721 NC_010524.1 769621 770133 R KEGG: mmw:Mmwyl1_1944 hypothetical protein; hypothetical protein complement(769621..770133) Leptothrix cholodnii SP-6 6162958 YP_001789762.1 CDS Lcho_0722 NC_010524.1 770218 771324 R KEGG: kpn:KPN_01707 hypothetical protein; hypothetical protein complement(770218..771324) Leptothrix cholodnii SP-6 6162959 YP_001789763.1 CDS Lcho_0723 NC_010524.1 771530 772525 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein; AraC family transcriptional regulator 771530..772525 Leptothrix cholodnii SP-6 6162960 YP_001789764.1 CDS Lcho_0726 NC_010524.1 773502 774950 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mpt:Mpe_A0752 hypothetical protein; transcriptional regulator complement(773502..774950) Leptothrix cholodnii SP-6 6162962 YP_001789765.1 CDS Lcho_0727 NC_010524.1 775018 775692 D KEGG: nwi:Nwi_0459 hypothetical protein; hypothetical protein 775018..775692 Leptothrix cholodnii SP-6 6163064 YP_001789766.1 CDS Lcho_0728 NC_010524.1 775755 777182 D TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pna:Pnap_2096 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase accessory protein CcoG 775755..777182 Leptothrix cholodnii SP-6 6163065 YP_001789767.1 CDS gmk NC_010524.1 777448 778077 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 777448..778077 Leptothrix cholodnii SP-6 6163066 YP_001789768.1 CDS Lcho_0730 NC_010524.1 778132 778335 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 778132..778335 Leptothrix cholodnii SP-6 6163067 YP_001789769.1 CDS Lcho_0731 NC_010524.1 778491 780800 D KEGG: mpt:Mpe_A2721 GTP diphosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 778491..780800 Leptothrix cholodnii SP-6 6163068 YP_001789770.1 CDS Lcho_0732 NC_010524.1 780790 781359 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: mpt:Mpe_A2723 transcription elongation factor; transcription elongation factor GreB complement(780790..781359) Leptothrix cholodnii SP-6 6163069 YP_001789771.1 CDS Lcho_0733 NC_010524.1 781601 782248 D TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; response regulator receiver; KEGG: reu:Reut_B5042 excisionase/Xis, DNA-binding; response regulator receiver protein 781601..782248 Leptothrix cholodnii SP-6 6160670 YP_001789772.1 CDS Lcho_0734 NC_010524.1 782367 782750 D PFAM: response regulator receiver; KEGG: dac:Daci_0738 response regulator receiver protein; response regulator receiver protein 782367..782750 Leptothrix cholodnii SP-6 6160671 YP_001789773.1 CDS Lcho_0735 NC_010524.1 782852 783559 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mpt:Mpe_A2643 putative two component response regulator protein; two component transcriptional regulator 782852..783559 Leptothrix cholodnii SP-6 6160672 YP_001789774.1 CDS Lcho_0736 NC_010524.1 783595 784890 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A2642 putative two component sensor histidine kinase protein; histidine kinase 783595..784890 Leptothrix cholodnii SP-6 6160673 YP_001789775.1 CDS Lcho_0737 NC_010524.1 784883 785326 R PFAM: protein of unknown function DUF1289; KEGG: mpt:Mpe_A2641 hypothetical protein; hypothetical protein complement(784883..785326) Leptothrix cholodnii SP-6 6160674 YP_001789776.1 CDS Lcho_0738 NC_010524.1 785370 785822 R PFAM: protein of unknown function DUF937; KEGG: gme:Gmet_2744 protein of unknown function DUF937; hypothetical protein complement(785370..785822) Leptothrix cholodnii SP-6 6160675 YP_001789777.1 CDS Lcho_0739 NC_010524.1 785891 787099 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(785891..787099) Leptothrix cholodnii SP-6 6160724 YP_001789778.1 CDS Lcho_0740 NC_010524.1 787186 787815 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: mpt:Mpe_A2638 putative phosphoribosylglycinamide formyltransferase protein; phosphoribosylglycinamide formyltransferase 787186..787815 Leptothrix cholodnii SP-6 6160725 YP_001789779.1 CDS Lcho_0741 NC_010524.1 787852 789108 D PFAM: Fmu (Sun) domain protein; KEGG: mpt:Mpe_A1114 NOL1/NOP2/Sun family protein; Fmu (Sun) domain-containing protein 787852..789108 Leptothrix cholodnii SP-6 6160726 YP_001789780.1 CDS Lcho_0742 NC_010524.1 789307 790530 D PFAM: fatty acid desaturase; KEGG: mpt:Mpe_A1115 putative stearoyl-CoA desaturase oxidoreductase protein; fatty acid desaturase 789307..790530 Leptothrix cholodnii SP-6 6160727 YP_001789781.1 CDS Lcho_0743 NC_010524.1 790596 790922 R KEGG: mpt:Mpe_A2746 hypothetical protein; hypothetical protein complement(790596..790922) Leptothrix cholodnii SP-6 6160728 YP_001789782.1 CDS Lcho_0744 NC_010524.1 790941 791963 D PFAM: peptidase M23B; KEGG: mpt:Mpe_A2745 putative transmembrane protein; peptidase M23B 790941..791963 Leptothrix cholodnii SP-6 6160729 YP_001789783.1 CDS Lcho_0745 NC_010524.1 792159 794918 D TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: mpt:Mpe_A2744 preprotein translocase SecA subunit; preprotein translocase subunit SecA 792159..794918 Leptothrix cholodnii SP-6 6161313 YP_001789784.1 CDS argJ NC_010524.1 794982 796211 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 794982..796211 Leptothrix cholodnii SP-6 6161314 YP_001789785.1 CDS Lcho_0747 NC_010524.1 796284 801080 R TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Na-Ca exchanger/integrin-beta4; KEGG: pfo:Pfl_1463 VCBS; outer membrane adhesin-like protein complement(796284..801080) Leptothrix cholodnii SP-6 6161315 YP_001789786.1 CDS Lcho_0748 NC_010524.1 801230 802300 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bvi:Bcep1808_3674 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(801230..802300) Leptothrix cholodnii SP-6 6161316 YP_001789787.1 CDS Lcho_0749 NC_010524.1 802297 803070 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ajs:Ajs_0858 glycerophosphodiester phosphodiesterase; glycerophosphodiester phosphodiesterase complement(802297..803070) Leptothrix cholodnii SP-6 6161317 YP_001789788.1 CDS Lcho_0750 NC_010524.1 803243 807172 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: mpt:Mpe_A2738 putative oxidoreductase protein; FAD linked oxidase domain-containing protein 803243..807172 Leptothrix cholodnii SP-6 6161318 YP_001789789.1 CDS Lcho_0751 NC_010524.1 807179 808885 R KEGG: mpt:Mpe_A1948 hypothetical protein; hypothetical protein complement(807179..808885) Leptothrix cholodnii SP-6 6161265 YP_001789790.1 CDS Lcho_0752 NC_010524.1 809054 809224 R PFAM: ribosomal protein L33; KEGG: dar:Daro_3144 50S ribosomal protein L33; 50S ribosomal protein L33 complement(809054..809224) Leptothrix cholodnii SP-6 6161266 YP_001789791.1 CDS rpmB NC_010524.1 809242 809475 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(809242..809475) Leptothrix cholodnii SP-6 6161267 YP_001789792.1 CDS Lcho_0754 NC_010524.1 809736 810701 R KEGG: mpt:Mpe_A1118 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(809736..810701) Leptothrix cholodnii SP-6 6161268 YP_001789793.1 CDS Lcho_0755 NC_010524.1 811011 811679 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mpt:Mpe_A1119 catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein); Crp/FNR family transcriptional regulator 811011..811679 Leptothrix cholodnii SP-6 6161269 YP_001789794.1 CDS Lcho_0756 NC_010524.1 811791 814202 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: mpt:Mpe_A1120 putative cell division FtsK transmembrane protein; cell division protein FtsK 811791..814202 Leptothrix cholodnii SP-6 6161270 YP_001789795.1 CDS Lcho_0757 NC_010524.1 814232 814870 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: mpt:Mpe_A1121 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 814232..814870 Leptothrix cholodnii SP-6 6163026 YP_001789796.1 CDS Lcho_0758 NC_010524.1 814921 816264 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A1122 recombination factor protein RarA; recombination factor protein RarA 814921..816264 Leptothrix cholodnii SP-6 6163027 YP_001789797.1 CDS Lcho_0759 NC_010524.1 816529 817464 D PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A1123 putative amino-acid transmembrane ABC transporter protein; inner-membrane translocator 816529..817464 Leptothrix cholodnii SP-6 6163028 YP_001789798.1 CDS Lcho_0760 NC_010524.1 817481 818566 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_3795 inner-membrane translocator; inner-membrane translocator 817481..818566 Leptothrix cholodnii SP-6 6163029 YP_001789799.1 CDS Lcho_0761 NC_010524.1 818577 819353 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1125 putative ABC transporter ATP-binding protein; ABC transporter-like protein 818577..819353 Leptothrix cholodnii SP-6 6163030 YP_001789800.1 CDS Lcho_0762 NC_010524.1 819368 820093 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1126 putative amino acid ATP-binding ABC transporter protein; ABC transporter-like protein 819368..820093 Leptothrix cholodnii SP-6 6163031 YP_001789801.1 CDS Lcho_0763 NC_010524.1 820188 823040 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(820188..823040) Leptothrix cholodnii SP-6 6163245 YP_001789802.1 CDS Lcho_0764 NC_010524.1 823160 824128 D KEGG: mpt:Mpe_A3002 putative porphobilinogen deaminase protein; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 823160..824128 Leptothrix cholodnii SP-6 6163246 YP_001789803.1 CDS Lcho_0765 NC_010524.1 824145 824948 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mpt:Mpe_A3001 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 824145..824948 Leptothrix cholodnii SP-6 6163247 YP_001789804.1 CDS Lcho_0766 NC_010524.1 825178 826242 D PFAM: protein of unknown function DUF513 hemX; KEGG: mpt:Mpe_A3000 putative uroporphyrin-III methylase; hypothetical protein 825178..826242 Leptothrix cholodnii SP-6 6163248 YP_001789805.1 CDS Lcho_0767 NC_010524.1 826255 827502 D PFAM: HemY domain protein; KEGG: mpt:Mpe_A2999 putative porphyrin biosynthesis-related protein; HemY domain-containing protein 826255..827502 Leptothrix cholodnii SP-6 6163249 YP_001789806.1 CDS Lcho_0768 NC_010524.1 828122 829135 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: eba:ebA495 phage-related integrase; integrase family protein complement(828122..829135) Leptothrix cholodnii SP-6 6163685 YP_001789807.1 CDS Lcho_0769 NC_010524.1 829128 830108 R PFAM: integrase family protein; KEGG: eba:ebA497 phage-related integrase; integrase family protein complement(829128..830108) Leptothrix cholodnii SP-6 6163686 YP_001789808.1 CDS Lcho_0770 NC_010524.1 830105 831358 R PFAM: integrase family protein; KEGG: eba:ebA499 phage-related integrase; integrase family protein complement(830105..831358) Leptothrix cholodnii SP-6 6163687 YP_001789809.1 CDS Lcho_0771 NC_010524.1 831851 832639 D KEGG: nha:Nham_1149 hypothetical protein; hypothetical protein 831851..832639 Leptothrix cholodnii SP-6 6163688 YP_001789810.1 CDS Lcho_0772 NC_010524.1 832632 835964 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: fjo:Fjoh_3576 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 832632..835964 Leptothrix cholodnii SP-6 6163689 YP_001789811.1 CDS Lcho_0773 NC_010524.1 836012 836683 R KEGG: mma:MM_2448 transposase; transposase complement(836012..836683) Leptothrix cholodnii SP-6 6163690 YP_001789812.1 CDS Lcho_0774 NC_010524.1 836683 837174 R KEGG: vei:Veis_4435 transposase; transposase complement(836683..837174) Leptothrix cholodnii SP-6 6163974 YP_001789813.1 CDS Lcho_0775 NC_010524.1 837820 838839 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mlo:mlr9324 integrase/recombinase; integrase family protein complement(837820..838839) Leptothrix cholodnii SP-6 6163975 YP_001789814.1 CDS Lcho_0776 NC_010524.1 838832 839833 R PFAM: integrase family protein; KEGG: eba:p2A219 putative integrase; integrase family protein complement(838832..839833) Leptothrix cholodnii SP-6 6163976 YP_001789815.1 CDS Lcho_0777 NC_010524.1 839830 841107 R PFAM: integrase family protein; KEGG: eba:ebA499 phage-related integrase; integrase family protein complement(839830..841107) Leptothrix cholodnii SP-6 6163977 YP_001789816.1 CDS Lcho_0778 NC_010524.1 841266 841565 D PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_4705 hypothetical protein; transposase IS3/IS911 family protein 841266..841565 Leptothrix cholodnii SP-6 6163978 YP_001789817.1 CDS Lcho_0779 NC_010524.1 841562 842449 D PFAM: Integrase catalytic region; KEGG: pol:Bpro_4706 integrase, catalytic region; integrase catalytic subunit 841562..842449 Leptothrix cholodnii SP-6 6163979 YP_001789818.1 CDS Lcho_0780 NC_010524.1 843234 843719 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mpt:Mpe_A1664 single-strand binding protein; ssDNA-binding protein 843234..843719 Leptothrix cholodnii SP-6 6160496 YP_001789819.1 CDS Lcho_0781 NC_010524.1 843793 844680 D PFAM: protein of unknown function DUF932; KEGG: mpt:Mpe_A1665 putative F plasmid protein; hypothetical protein 843793..844680 Leptothrix cholodnii SP-6 6160497 YP_001789820.1 CDS Lcho_0782 NC_010524.1 844970 845815 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: abo:ABO_2074 ParA family protein; cobyrinic acid ac-diamide synthase 844970..845815 Leptothrix cholodnii SP-6 6160498 YP_001789821.1 CDS Lcho_0783 NC_010524.1 845799 846761 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KorB domain protein; KEGG: ajs:Ajs_4306 ParB-like partition proteins; parB-like partition protein 845799..846761 Leptothrix cholodnii SP-6 6160499 YP_001789822.1 CDS Lcho_0784 NC_010524.1 847048 847620 D hypothetical protein 847048..847620 Leptothrix cholodnii SP-6 6160500 YP_001789823.1 CDS Lcho_0785 NC_010524.1 847637 848602 D KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like; putative DNA relaxase/nickase, TraS/VirD2-like protein 847637..848602 Leptothrix cholodnii SP-6 6160501 YP_001789824.1 CDS Lcho_0786 NC_010524.1 848838 849089 R hypothetical protein complement(848838..849089) Leptothrix cholodnii SP-6 6160730 YP_001789825.1 CDS Lcho_0788 NC_010524.1 850256 850888 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rfr:Rfer_2534 NADP oxidoreductase, coenzyme F420-dependent; coenzyme F420-dependent NADP oxidoreductase 850256..850888 Leptothrix cholodnii SP-6 6160732 YP_001789826.1 CDS Lcho_0789 NC_010524.1 850972 851592 D PFAM: phospholipase/Carboxylesterase; KEGG: mmw:Mmwyl1_0129 phospholipase/carboxylesterase; phospholipase/carboxylesterase 850972..851592 Leptothrix cholodnii SP-6 6160733 YP_001789827.1 CDS Lcho_0790 NC_010524.1 851667 852386 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0990 ABC transporter related; ABC transporter-like protein complement(851667..852386) Leptothrix cholodnii SP-6 6160734 YP_001789828.1 CDS Lcho_0791 NC_010524.1 852397 853143 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0989 ABC transporter related; ABC transporter-like protein complement(852397..853143) Leptothrix cholodnii SP-6 6160735 YP_001789829.1 CDS Lcho_0792 NC_010524.1 853143 854150 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_0988 inner-membrane translocator; inner-membrane translocator complement(853143..854150) Leptothrix cholodnii SP-6 6161146 YP_001789830.1 CDS Lcho_0793 NC_010524.1 854163 855083 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_0987 inner-membrane translocator; inner-membrane translocator complement(854163..855083) Leptothrix cholodnii SP-6 6161147 YP_001789831.1 CDS Lcho_0794 NC_010524.1 855094 856254 R PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0986 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(855094..856254) Leptothrix cholodnii SP-6 6161148 YP_001789832.1 CDS Lcho_0795 NC_010524.1 856330 856647 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0985 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(856330..856647) Leptothrix cholodnii SP-6 6161149 YP_001789833.1 CDS Lcho_0796 NC_010524.1 856656 857138 R PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: aav:Aave_0166 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta complement(856656..857138) Leptothrix cholodnii SP-6 6161150 YP_001789834.1 CDS Lcho_0797 NC_010524.1 857142 858401 R PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(857142..858401) Leptothrix cholodnii SP-6 6161151 YP_001789835.1 CDS Lcho_0798 NC_010524.1 858432 859127 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0982 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(858432..859127) Leptothrix cholodnii SP-6 6161114 YP_001789836.1 CDS Lcho_0799 NC_010524.1 859151 860197 R TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_0981 gentisate 1,2-dioxygenase; gentisate 1,2-dioxygenase complement(859151..860197) Leptothrix cholodnii SP-6 6161115 YP_001789837.1 CDS Lcho_0800 NC_010524.1 860209 861195 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_0980 oxidoreductase FAD-binding region; oxidoreductase FAD-binding subunit complement(860209..861195) Leptothrix cholodnii SP-6 6161116 YP_001789838.1 CDS Lcho_0801 NC_010524.1 861311 862240 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0979 transcriptional regulator, LysR family; LysR family transcriptional regulator 861311..862240 Leptothrix cholodnii SP-6 6161117 YP_001789839.1 CDS Lcho_0802 NC_010524.1 862368 863651 D PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: pol:Bpro_5567 putative transcriptional regulator, fis family; Fis family transcriptional regulator 862368..863651 Leptothrix cholodnii SP-6 6161118 YP_001789840.1 CDS Lcho_0803 NC_010524.1 863769 865514 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pde:Pden_0181 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 863769..865514 Leptothrix cholodnii SP-6 6161119 YP_001789841.1 CDS Lcho_0804 NC_010524.1 865553 867004 D PFAM: Aldehyde Dehydrogenase_; KEGG: pde:Pden_0180 aldehyde dehydrogenase; aldehyde dehydrogenase 865553..867004 Leptothrix cholodnii SP-6 6162146 YP_001789842.1 CDS Lcho_0805 NC_010524.1 867082 868137 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mmr:Mmar10_0276 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(867082..868137) Leptothrix cholodnii SP-6 6162147 YP_001789843.1 CDS Lcho_0806 NC_010524.1 868242 869501 R PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_0659 putative major facilitator superfamily (MFS) transporter; major facilitator transporter complement(868242..869501) Leptothrix cholodnii SP-6 6162148 YP_001789844.1 CDS Lcho_0807 NC_010524.1 869511 871175 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: rle:RL4489 putative glycosyl hydrolase; glycoside hydrolase family 3 complement(869511..871175) Leptothrix cholodnii SP-6 6162149 YP_001789845.1 CDS Lcho_0808 NC_010524.1 871247 873448 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1901 TonB-dependent receptor; TonB-dependent receptor complement(871247..873448) Leptothrix cholodnii SP-6 6162150 YP_001789846.1 CDS Lcho_0809 NC_010524.1 873622 874473 R PFAM: alpha/beta hydrolase fold; KEGG: fre:Franean1_0952 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(873622..874473) Leptothrix cholodnii SP-6 6162151 YP_001789847.1 CDS Lcho_0810 NC_010524.1 874477 875304 R KEGG: nar:Saro_1725 hypothetical protein; hypothetical protein complement(874477..875304) Leptothrix cholodnii SP-6 6162976 YP_001789848.1 CDS Lcho_0811 NC_010524.1 875333 876529 R KEGG: bur:Bcep18194_A5004 hypothetical protein; hypothetical protein complement(875333..876529) Leptothrix cholodnii SP-6 6162977 YP_001789849.1 CDS Lcho_0812 NC_010524.1 876539 876967 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mms:mma_0247 biopolymer transport protein ExbD; biopolymer transport protein ExbD/TolR complement(876539..876967) Leptothrix cholodnii SP-6 6162978 YP_001789850.1 CDS Lcho_0813 NC_010524.1 876978 877388 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mpt:Mpe_A1756 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR complement(876978..877388) Leptothrix cholodnii SP-6 6162979 YP_001789851.1 CDS Lcho_0814 NC_010524.1 877453 878250 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein; MotA/TolQ/ExbB proton channel complement(877453..878250) Leptothrix cholodnii SP-6 6162980 YP_001789852.1 CDS Lcho_0815 NC_010524.1 878337 879011 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mag:amb3549 periplasmic protein TonB, links inner and outer membranes; TonB family protein complement(878337..879011) Leptothrix cholodnii SP-6 6162981 YP_001789853.1 CDS Lcho_0816 NC_010524.1 879500 880369 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pde:Pden_0188 regulatory proteins, IclR; IclR family transcriptional regulator complement(879500..880369) Leptothrix cholodnii SP-6 6163601 YP_001789854.1 CDS Lcho_0817 NC_010524.1 880451 881206 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pde:Pden_0192 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(880451..881206) Leptothrix cholodnii SP-6 6163602 YP_001789855.1 CDS Lcho_0818 NC_010524.1 881321 882550 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pde:Pden_0195 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(881321..882550) Leptothrix cholodnii SP-6 6163603 YP_001789856.1 CDS Lcho_0819 NC_010524.1 882550 883428 R KEGG: pde:Pden_0194 hypothetical protein; hypothetical protein complement(882550..883428) Leptothrix cholodnii SP-6 6163604 YP_001789857.1 CDS Lcho_0820 NC_010524.1 883666 884088 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pde:Pden_0191 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 883666..884088 Leptothrix cholodnii SP-6 6163605 YP_001789858.1 CDS Lcho_0821 NC_010524.1 884121 885179 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: reu:Reut_B5224 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit Dctp 884121..885179 Leptothrix cholodnii SP-6 6163606 YP_001789859.1 CDS Lcho_0822 NC_010524.1 885208 887094 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vei:Veis_4815 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 885208..887094 Leptothrix cholodnii SP-6 6163383 YP_001789860.1 CDS Lcho_0823 NC_010524.1 887123 888046 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: mxa:MXAN_5469 male sterility protein-like protein; NAD-dependent epimerase/dehydratase 887123..888046 Leptothrix cholodnii SP-6 6163384 YP_001789861.1 CDS Lcho_0824 NC_010524.1 888058 888828 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pde:Pden_0196 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 888058..888828 Leptothrix cholodnii SP-6 6163385 YP_001789862.1 CDS Lcho_0825 NC_010524.1 888870 889280 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: rha:RHA1_ro00659 possible WhiE protein; cupin 888870..889280 Leptothrix cholodnii SP-6 6163386 YP_001789863.1 CDS Lcho_0826 NC_010524.1 889313 889636 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pna:Pnap_2814 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 889313..889636 Leptothrix cholodnii SP-6 6163387 YP_001789864.1 CDS Lcho_0827 NC_010524.1 889633 890184 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: har:HEAR2599 hypothetical protein; hemerythrin HHE cation-binding domain-containing protein 889633..890184 Leptothrix cholodnii SP-6 6163388 YP_001789865.1 CDS Lcho_0828 NC_010524.1 890213 891118 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3339 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(890213..891118) Leptothrix cholodnii SP-6 6160639 YP_001789866.1 CDS Lcho_0829 NC_010524.1 891261 891464 D PFAM: 4-oxalocrotonate tautomerase; KEGG: rso:RS05436 hypothetical protein; 4-oxalocrotonate tautomerase 891261..891464 Leptothrix cholodnii SP-6 6160640 YP_001789867.1 CDS Lcho_0830 NC_010524.1 891479 891892 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mpt:Mpe_A0409 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(891479..891892) Leptothrix cholodnii SP-6 6160641 YP_001789868.1 CDS Lcho_0831 NC_010524.1 891945 893147 R KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase complement(891945..893147) Leptothrix cholodnii SP-6 6160642 YP_001789869.1 CDS Lcho_0832 NC_010524.1 893152 893814 R KEGG: rso:RSc2253 probable 3-oxoadipate CoA-transferase subunit B protein; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(893152..893814) Leptothrix cholodnii SP-6 6160643 YP_001789870.1 CDS Lcho_0833 NC_010524.1 893825 894526 R KEGG: aav:Aave_3946 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(893825..894526) Leptothrix cholodnii SP-6 6160644 YP_001789871.1 CDS Lcho_0834 NC_010524.1 894529 895413 R PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bur:Bcep18194_A4486 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase complement(894529..895413) Leptothrix cholodnii SP-6 6161490 YP_001789872.1 CDS Lcho_0835 NC_010524.1 895531 896454 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A4487 transcriptional regulator, LysR family; LysR family transcriptional regulator 895531..896454 Leptothrix cholodnii SP-6 6161491 YP_001789873.1 CDS Lcho_0836 NC_010524.1 896638 896946 D PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: bam:Bamb_3334 stress responsive alpha-beta barrel domain protein; stress responsive alpha-beta barrel domain-containing protein 896638..896946 Leptothrix cholodnii SP-6 6161492 YP_001789874.1 CDS Lcho_0837 NC_010524.1 896949 898019 D PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 896949..898019 Leptothrix cholodnii SP-6 6161493 YP_001789875.1 CDS Lcho_0838 NC_010524.1 898088 899191 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rha:RHA1_ro02994 possible oxidoreductase; oxidoreductase domain-containing protein 898088..899191 Leptothrix cholodnii SP-6 6161494 YP_001789876.1 CDS Lcho_0839 NC_010524.1 899188 900066 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_3326 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 899188..900066 Leptothrix cholodnii SP-6 6161495 YP_001789877.1 CDS Lcho_0840 NC_010524.1 900087 901082 D PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase domain; KEGG: acr:Acry_2329 inositol 2-dehydrogenase; inositol 2-dehydrogenase 900087..901082 Leptothrix cholodnii SP-6 6161635 YP_001789878.1 CDS Lcho_0841 NC_010524.1 901202 902269 D KEGG: rha:RHA1_ro00226 ABC sugar transporter, periplasmic solute-binding protein; sugar ABC transporter substrate-binding protein 901202..902269 Leptothrix cholodnii SP-6 6161636 YP_001789879.1 CDS Lcho_0842 NC_010524.1 902334 903149 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nca:Noca_2377 ABC transporter related; ABC transporter-like protein 902334..903149 Leptothrix cholodnii SP-6 6161637 YP_001789880.1 CDS Lcho_0843 NC_010524.1 903176 904399 D PFAM: inner-membrane translocator; KEGG: pde:Pden_1034 inner-membrane translocator; inner-membrane translocator 903176..904399 Leptothrix cholodnii SP-6 6161638 YP_001789881.1 CDS Lcho_0844 NC_010524.1 904419 905621 R KEGG: rfr:Rfer_0226 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase complement(904419..905621) Leptothrix cholodnii SP-6 6161639 YP_001789882.1 CDS Lcho_0845 NC_010524.1 905679 907742 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pna:Pnap_2135 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase complement(905679..907742) Leptothrix cholodnii SP-6 6161640 YP_001789883.1 CDS Lcho_0846 NC_010524.1 907771 909018 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bmu:Bmul_1907 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(907771..909018) Leptothrix cholodnii SP-6 6160779 YP_001789884.1 CDS Lcho_0847 NC_010524.1 909025 910185 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_5908 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein complement(909025..910185) Leptothrix cholodnii SP-6 6160780 YP_001789885.1 CDS Lcho_0848 NC_010524.1 910214 910579 R PFAM: cytochrome c class I; KEGG: gtn:GTNG_2417 membrane-attached cytochrome c550; cytochrome c class I complement(910214..910579) Leptothrix cholodnii SP-6 6160781 YP_001789886.1 CDS Lcho_0849 NC_010524.1 910587 912173 R PFAM: Pyrrolo-quinoline quinone; KEGG: bbt:BBta_2326 putative quinoprotein; Pyrrolo-quinoline quinone complement(910587..912173) Leptothrix cholodnii SP-6 6160782 YP_001789887.1 CDS Lcho_0850 NC_010524.1 912192 912551 R KEGG: mpt:Mpe_A1596 hypothetical protein; hypothetical protein complement(912192..912551) Leptothrix cholodnii SP-6 6160783 YP_001789888.1 CDS Lcho_0851 NC_010524.1 912555 914231 R PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A1595 putative alcohol dehydrogenase; Pyrrolo-quinoline quinone complement(912555..914231) Leptothrix cholodnii SP-6 6160784 YP_001789889.1 CDS Lcho_0852 NC_010524.1 914341 915438 R PFAM: luciferase family protein; KEGG: pde:Pden_0203 luciferase family protein; luciferase family protein complement(914341..915438) Leptothrix cholodnii SP-6 6160411 YP_001789890.1 CDS Lcho_0853 NC_010524.1 915515 916072 R PFAM: flavin reductase domain protein FMN-binding; KEGG: nar:Saro_3612 flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein complement(915515..916072) Leptothrix cholodnii SP-6 6160412 YP_001789891.1 CDS Lcho_0854 NC_010524.1 916412 918391 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pap:PSPA7_0941 transcriptional regulator AcoR; Fis family GAF modulated sigma54 specific transcriptional regulator 916412..918391 Leptothrix cholodnii SP-6 6160413 YP_001789892.1 CDS Lcho_0855 NC_010524.1 918572 919789 D KEGG: stp:Strop_1877 GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 918572..919789 Leptothrix cholodnii SP-6 6160414 YP_001789893.1 CDS Lcho_0856 NC_010524.1 919833 921272 D PFAM: Aldehyde Dehydrogenase_; KEGG: pol:Bpro_0086 aldehyde dehydrogenase; aldehyde dehydrogenase 919833..921272 Leptothrix cholodnii SP-6 6160415 YP_001789894.1 CDS Lcho_0857 NC_010524.1 921324 922073 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ajs:Ajs_2810 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein alpha/beta-subunit 921324..922073 Leptothrix cholodnii SP-6 6160416 YP_001789895.1 CDS Lcho_0858 NC_010524.1 922076 923005 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ajs:Ajs_2809 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 922076..923005 Leptothrix cholodnii SP-6 6160361 YP_001789896.1 CDS Lcho_0859 NC_010524.1 923077 923967 D KEGG: pdi:BDI_2988 periplasmic component of the Tol biopolymer transport system; periplasmic component of the Tol biopolymer transport system 923077..923967 Leptothrix cholodnii SP-6 6160362 YP_001789897.1 CDS Lcho_0860 NC_010524.1 924059 925174 R KEGG: mpt:Mpe_A1675 hypothetical protein; hypothetical protein complement(924059..925174) Leptothrix cholodnii SP-6 6160363 YP_001789898.1 CDS Lcho_0861 NC_010524.1 925214 925906 R PFAM: OmpA/MotB domain protein; KEGG: mpt:Mpe_A1676 hypothetical protein; OmpA/MotB domain-containing protein complement(925214..925906) Leptothrix cholodnii SP-6 6160364 YP_001789899.1 CDS Lcho_0862 NC_010524.1 925925 927958 R PFAM: TRAG family protein; KEGG: bxe:Bxe_C0458 putative type IV secretory pathway protein VirD4; TRAG family protein complement(925925..927958) Leptothrix cholodnii SP-6 6160365 YP_001789900.1 CDS Lcho_0863 NC_010524.1 927955 929061 R TIGRFAM: P-type DNA transfer ATPase VirB11; PFAM: type II secretion system protein E; KEGG: mpt:Mpe_A1678 type IV secretory pathway, VirB11 component; P-type DNA transfer ATPase VirB11 complement(927955..929061) Leptothrix cholodnii SP-6 6160366 YP_001789901.1 CDS Lcho_0864 NC_010524.1 929082 930560 R PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component; conjugation TrbI family protein complement(929082..930560) Leptothrix cholodnii SP-6 6161701 YP_001789902.1 CDS Lcho_0865 NC_010524.1 930553 931500 R PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mpt:Mpe_A1680 type IV secretory pathway, VirB9 component; conjugal transfer protein TrbG/VirB9/CagX complement(930553..931500) Leptothrix cholodnii SP-6 6161702 YP_001789903.1 CDS Lcho_0866 NC_010524.1 931497 932369 R PFAM: VirB8 family protein; KEGG: mpt:Mpe_A1681 type IV secretory pathway, VirB8 component; VirB8 family protein complement(931497..932369) Leptothrix cholodnii SP-6 6161703 YP_001789904.1 CDS Lcho_0867 NC_010524.1 932385 933101 R PFAM: type IV secretion system family protein; KEGG: bxe:Bxe_C0452 putative type IV secretion system protein VirB5/TraF; type IV secretion system family protein complement(932385..933101) Leptothrix cholodnii SP-6 6161704 YP_001789905.1 CDS Lcho_0868 NC_010524.1 933191 934228 R PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bxe:Bxe_A2654 putative type IV secretion system protein VirB6/TraH; TrbL/VirB6 plasmid conjugal transfer protein complement(933191..934228) Leptothrix cholodnii SP-6 6161705 YP_001789906.1 CDS Lcho_0869 NC_010524.1 934239 934658 R hypothetical protein complement(934239..934658) Leptothrix cholodnii SP-6 6161706 YP_001789907.1 CDS Lcho_0870 NC_010524.1 934655 937147 R TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: bxe:Bxe_C0450 putative type IV secretion system protein VirB4/TraE; type IV secretion/conjugal transfer ATPase complement(934655..937147) Leptothrix cholodnii SP-6 6163590 YP_001789908.1 CDS Lcho_0871 NC_010524.1 937131 937463 R PFAM: type IV secretory pathway VirB3 family protein; KEGG: bch:Bcen2424_3314 type IV secretory pathway, VirB3 family protein; type IV secretory pathway VirB3 family protein complement(937131..937463) Leptothrix cholodnii SP-6 6163591 YP_001789909.1 CDS Lcho_0872 NC_010524.1 937482 937772 R PFAM: Conjugal transfer protein TrbC; KEGG: bcs:BCAN_B0071 TraC protein; conjugal transfer protein TrbC complement(937482..937772) Leptothrix cholodnii SP-6 6163592 YP_001789910.1 CDS Lcho_0873 NC_010524.1 937794 938303 R PFAM: Lytic transglycosylase catalytic; KEGG: bmu:Bmul_3753 lytic transglycosylase catalytic; lytic transglycosylase catalytic subunit complement(937794..938303) Leptothrix cholodnii SP-6 6163593 YP_001789911.1 CDS Lcho_0874 NC_010524.1 938318 938878 R KEGG: bxe:Bxe_A1752 hypothetical protein; hypothetical protein complement(938318..938878) Leptothrix cholodnii SP-6 6163594 YP_001789912.1 CDS Lcho_0875 NC_010524.1 938995 939759 R PFAM: regulatory protein LuxR; KEGG: mpt:Mpe_A1685 hypothetical protein; LuxR family transcriptional regulator complement(938995..939759) Leptothrix cholodnii SP-6 6163595 YP_001789913.1 CDS Lcho_0876 NC_010524.1 939833 940183 R hypothetical protein complement(939833..940183) Leptothrix cholodnii SP-6 6163564 YP_001789914.1 CDS Lcho_0877 NC_010524.1 940530 940955 R KEGG: mpt:Mpe_A1683 hypothetical protein; hypothetical protein complement(940530..940955) Leptothrix cholodnii SP-6 6163565 YP_001789915.1 CDS Lcho_0878 NC_010524.1 941264 942208 D PFAM: fatty acid desaturase; KEGG: bxe:Bxe_A1748 putative fatty acid desaturase; fatty acid desaturase 941264..942208 Leptothrix cholodnii SP-6 6163566 YP_001789916.1 CDS Lcho_0879 NC_010524.1 942205 943455 D KEGG: bxe:Bxe_A2669 hypothetical protein; hypothetical protein 942205..943455 Leptothrix cholodnii SP-6 6163567 YP_001789917.1 CDS Lcho_0880 NC_010524.1 943524 944378 R specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(943524..944378) Leptothrix cholodnii SP-6 6163568 YP_001789918.1 CDS Lcho_0881 NC_010524.1 944832 945140 D hypothetical protein 944832..945140 Leptothrix cholodnii SP-6 6163569 YP_001789919.1 CDS Lcho_0882 NC_010524.1 945163 945390 R PFAM: Prophage CP4-57 regulatory; KEGG: hha:Hhal_1156 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA complement(945163..945390) Leptothrix cholodnii SP-6 6163194 YP_001789920.1 CDS Lcho_0883 NC_010524.1 945558 946538 D PFAM: Integrase catalytic region; KEGG: bxe:Bxe_B0052 putative transposase; integrase catalytic subunit 945558..946538 Leptothrix cholodnii SP-6 6163195 YP_001789921.1 CDS Lcho_0884 NC_010524.1 946909 948333 R PFAM: carbohydrate kinase FGGY; KEGG: ace:Acel_0722 carbohydrate kinase, FGGY; carbohydrate kinase FGGY complement(946909..948333) Leptothrix cholodnii SP-6 6163196 YP_001789922.1 CDS Lcho_0885 NC_010524.1 948356 949357 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sen:SACE_4163 zinc-binding dehydrogenase; alcohol dehydrogenase complement(948356..949357) Leptothrix cholodnii SP-6 6163197 YP_001789923.1 CDS Lcho_0886 NC_010524.1 949423 950205 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ace:Acel_0721 fructose-bisphosphate aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase complement(949423..950205) Leptothrix cholodnii SP-6 6163198 YP_001789924.1 CDS Lcho_0887 NC_010524.1 950483 951244 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sme:SMc02340 putative transcription regulator protein; GntR family transcriptional regulator 950483..951244 Leptothrix cholodnii SP-6 6163199 YP_001789925.1 CDS Lcho_0888 NC_010524.1 951408 951569 D hypothetical protein 951408..951569 Leptothrix cholodnii SP-6 6162608 YP_001789926.1 CDS Lcho_0889 NC_010524.1 951782 953089 D PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4845 extracellular solute-binding protein, family 1; extracellular solute-binding protein 951782..953089 Leptothrix cholodnii SP-6 6162609 YP_001789927.1 CDS Lcho_0890 NC_010524.1 953207 954049 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3853 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 953207..954049 Leptothrix cholodnii SP-6 6162610 YP_001789928.1 CDS Lcho_0891 NC_010524.1 954046 954876 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3852 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 954046..954876 Leptothrix cholodnii SP-6 6162611 YP_001789929.1 CDS Lcho_0892 NC_010524.1 954895 955968 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: csa:Csal_2614 ABC transporter related; ABC transporter-like protein 954895..955968 Leptothrix cholodnii SP-6 6162612 YP_001789930.1 CDS Lcho_0893 NC_010524.1 955998 957638 D PFAM: Dak kinase; Dak phosphatase; KEGG: ret:RHE_CH02988 dihydroxyacetone kinase protein; Glycerone kinase 955998..957638 Leptothrix cholodnii SP-6 6162613 YP_001789931.1 CDS Lcho_0894 NC_010524.1 957669 959072 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vei:Veis_3167 mannitol dehydrogenase, C-terminal domain; mannitol dehydrogenase domain-containing protein 957669..959072 Leptothrix cholodnii SP-6 6162358 YP_001789932.1 CDS Lcho_0895 NC_010524.1 959122 960030 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vei:Veis_3165 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 959122..960030 Leptothrix cholodnii SP-6 6162359 YP_001789933.1 CDS Lcho_0896 NC_010524.1 960432 961652 R PFAM: filamentation induced by cAMP protein Fic; KEGG: aav:Aave_4624 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(960432..961652) Leptothrix cholodnii SP-6 6162360 YP_001789934.1 CDS Lcho_0897 NC_010524.1 961895 963556 R PFAM: integrase family protein; KEGG: dar:Daro_2526 phage integrase; integrase family protein complement(961895..963556) Leptothrix cholodnii SP-6 6162361 YP_001789935.1 CDS Lcho_0898 NC_010524.1 963986 964120 D hypothetical protein 963986..964120 Leptothrix cholodnii SP-6 6162362 YP_001789936.1 CDS Lcho_0899 NC_010524.1 964166 964819 D KEGG: art:Arth_3462 phosphoribosyltransferase; phosphoribosyltransferase 964166..964819 Leptothrix cholodnii SP-6 6162363 YP_001789937.1 CDS Lcho_0900 NC_010524.1 964816 965424 D KEGG: aeh:Mlg_1733 phosphoribosyltransferase; phosphoribosyltransferase 964816..965424 Leptothrix cholodnii SP-6 6162215 YP_001789938.1 CDS Lcho_0901 NC_010524.1 965441 966148 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bte:BTH_II1247 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(965441..966148) Leptothrix cholodnii SP-6 6162216 YP_001789939.1 CDS Lcho_0902 NC_010524.1 966145 967674 R KEGG: reh:H16_A1985 signal transduction histidine kinase containing PAS/PAC sensor domain; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(966145..967674) Leptothrix cholodnii SP-6 6162217 YP_001789940.1 CDS Lcho_0903 NC_010524.1 968198 969061 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pna:Pnap_0792 putative transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 968198..969061 Leptothrix cholodnii SP-6 6162218 YP_001789941.1 CDS Lcho_0904 NC_010524.1 969100 969369 R hypothetical protein complement(969100..969369) Leptothrix cholodnii SP-6 6162219 YP_001789942.1 CDS Lcho_0905 NC_010524.1 969501 969854 R KEGG: mpt:Mpe_A3028 hypothetical protein; hypothetical protein complement(969501..969854) Leptothrix cholodnii SP-6 6162220 YP_001789943.1 CDS Lcho_0906 NC_010524.1 970066 971274 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 970066..971274 Leptothrix cholodnii SP-6 6162101 YP_001789944.1 CDS Lcho_0907 NC_010524.1 971271 972233 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 971271..972233 Leptothrix cholodnii SP-6 6162102 YP_001789945.1 CDS Lcho_0908 NC_010524.1 972272 972931 D KEGG: mpt:Mpe_A0404 hypothetical protein; hypothetical protein 972272..972931 Leptothrix cholodnii SP-6 6162103 YP_001789946.1 CDS Lcho_0909 NC_010524.1 972967 973881 R PFAM: MltA-interacting MipA family protein; KEGG: mpt:Mpe_A1330 putative outer membrane protein; MltA-interacting MipA family protein complement(972967..973881) Leptothrix cholodnii SP-6 6162104 YP_001789947.1 CDS Lcho_0910 NC_010524.1 974055 974798 D PFAM: metallophosphoesterase; KEGG: mpt:Mpe_A3031 putative serine/threonine phosphatase; metallophosphoesterase 974055..974798 Leptothrix cholodnii SP-6 6162105 YP_001789948.1 CDS Lcho_0911 NC_010524.1 974810 976249 D PFAM: UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mpt:Mpe_A3032 putative serine/threonine kinase; serine/threonine protein kinase 974810..976249 Leptothrix cholodnii SP-6 6162106 YP_001789949.1 CDS Lcho_0912 NC_010524.1 976324 977664 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(976324..977664) Leptothrix cholodnii SP-6 6160244 YP_001789950.1 CDS Lcho_0913 NC_010524.1 977831 978145 D PFAM: protein of unknown function DUF1255; KEGG: eba:ebD86 hypothetical protein; hypothetical protein 977831..978145 Leptothrix cholodnii SP-6 6160245 YP_001789951.1 CDS Lcho_0914 NC_010524.1 978292 978792 D KEGG: cvi:CV_2214 hypothetical protein; hypothetical protein 978292..978792 Leptothrix cholodnii SP-6 6160246 YP_001789952.1 CDS Lcho_0915 NC_010524.1 978789 981257 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: cvi:CV_2213 probable sensor histidine kinase/response regulator; Hpt sensor hybrid histidine kinase 978789..981257 Leptothrix cholodnii SP-6 6160247 YP_001789953.1 CDS Lcho_0916 NC_010524.1 981246 981668 R KEGG: mpt:Mpe_A3554 hypothetical protein; hypothetical protein complement(981246..981668) Leptothrix cholodnii SP-6 6160248 YP_001789954.1 CDS Lcho_0917 NC_010524.1 981754 983124 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(981754..983124) Leptothrix cholodnii SP-6 6160249 YP_001789955.1 CDS Lcho_0918 NC_010524.1 983204 983833 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mpt:Mpe_A2512 LysE family efflux protein; lysine exporter protein LysE/YggA 983204..983833 Leptothrix cholodnii SP-6 6159899 YP_001789956.1 CDS Lcho_0919 NC_010524.1 983855 984265 R PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor; class I peptide chain release factor complement(983855..984265) Leptothrix cholodnii SP-6 6159900 YP_001789957.1 CDS Lcho_0920 NC_010524.1 984281 985414 R KEGG: ajs:Ajs_0176 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(984281..985414) Leptothrix cholodnii SP-6 6159901 YP_001789958.1 CDS Lcho_0921 NC_010524.1 985646 986899 D PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A3563 hypothetical protein; lysophospholipid transporter LplT 985646..986899 Leptothrix cholodnii SP-6 6159902 YP_001789959.1 CDS Lcho_0922 NC_010524.1 986912 987841 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A3564 putative transmembrane protein; hypothetical protein 986912..987841 Leptothrix cholodnii SP-6 6159903 YP_001789960.1 CDS Lcho_0923 NC_010524.1 987860 988699 R PFAM: response regulator receiver; KEGG: mpt:Mpe_A3686 response regulator; response regulator receiver protein complement(987860..988699) Leptothrix cholodnii SP-6 6159904 YP_001789961.1 CDS Lcho_0924 NC_010524.1 988960 990156 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 988960..990156 Leptothrix cholodnii SP-6 6160046 YP_001789962.1 CDS Lcho_0925 NC_010524.1 990200 991171 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(990200..991171) Leptothrix cholodnii SP-6 6160047 YP_001789963.1 CDS Lcho_0926 NC_010524.1 991293 991526 D hypothetical protein 991293..991526 Leptothrix cholodnii SP-6 6160048 YP_001789964.1 CDS Lcho_0927 NC_010524.1 991568 991822 D hypothetical protein 991568..991822 Leptothrix cholodnii SP-6 6160049 YP_001789965.1 CDS Lcho_0928 NC_010524.1 991825 993309 R PFAM: Aldehyde Dehydrogenase_; KEGG: sil:SPO0097 aldehyde dehydrogenase family protein; aldehyde dehydrogenase complement(991825..993309) Leptothrix cholodnii SP-6 6160050 YP_001789966.1 CDS mscL NC_010524.1 993457 993879 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(993457..993879) Leptothrix cholodnii SP-6 6160051 YP_001789967.1 CDS Lcho_0930 NC_010524.1 994108 994704 D KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 994108..994704 Leptothrix cholodnii SP-6 6159775 YP_001789968.1 CDS Lcho_0931 NC_010524.1 994723 996126 D PFAM: Cytochrome b/b6 domain; KEGG: mpt:Mpe_A0850 cytochrome b; cytochrome b/b6 domain-containing protein 994723..996126 Leptothrix cholodnii SP-6 6159776 YP_001789969.1 CDS Lcho_0932 NC_010524.1 996152 996934 D PFAM: cytochrome c1; KEGG: mpt:Mpe_A0851 cytochrome c1 precursor; cytochrome c1 996152..996934 Leptothrix cholodnii SP-6 6159777 YP_001789970.1 CDS Lcho_0933 NC_010524.1 997048 997662 D PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A0852 putative transcription modulator protein; glutathione S-transferase domain-containing protein 997048..997662 Leptothrix cholodnii SP-6 6159778 YP_001789971.1 CDS Lcho_0934 NC_010524.1 997676 998233 D PFAM: Stringent starvation protein B; KEGG: mpt:Mpe_A0853 ClpXP protease specificity-enhancing factor; ClpXP protease specificity-enhancing factor 997676..998233 Leptothrix cholodnii SP-6 6159779 YP_001789972.1 CDS Lcho_0935 NC_010524.1 998522 999187 D PFAM: Transaldolase; KEGG: ade:Adeh_4063 putative translaldolase; transaldolase 998522..999187 Leptothrix cholodnii SP-6 6159738 YP_001789973.1 CDS Lcho_0936 NC_010524.1 999192 999647 D PFAM: protein of unknown function DUF454; KEGG: rfr:Rfer_2579 protein of unknown function DUF454; hypothetical protein 999192..999647 Leptothrix cholodnii SP-6 6159739 YP_001789974.1 CDS Lcho_0937 NC_010524.1 999590 1000900 R PFAM: UMUC domain protein DNA-repair protein; KEGG: mpt:Mpe_A1234 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(999590..1000900) Leptothrix cholodnii SP-6 6159740 YP_001789975.1 CDS Lcho_0938 NC_010524.1 1001043 1002299 D KEGG: rfr:Rfer_1228 hypothetical protein; hypothetical protein 1001043..1002299 Leptothrix cholodnii SP-6 6159741 YP_001789976.1 CDS Lcho_0939 NC_010524.1 1002462 1003925 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: mpt:Mpe_A3769 TldD protein; peptidase U62 modulator of DNA gyrase 1002462..1003925 Leptothrix cholodnii SP-6 6159742 YP_001789977.1 CDS Lcho_0940 NC_010524.1 1004178 1005299 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1004178..1005299 Leptothrix cholodnii SP-6 6160221 YP_001789978.1 CDS Lcho_0941 NC_010524.1 1005355 1005657 D KEGG: ajs:Ajs_3643 hypothetical protein; hypothetical protein 1005355..1005657 Leptothrix cholodnii SP-6 6160222 YP_001789979.1 CDS Lcho_0942 NC_010524.1 1005694 1006269 R TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: mpt:Mpe_A3773 hypothetical protein; ATP--cobalamin adenosyltransferase complement(1005694..1006269) Leptothrix cholodnii SP-6 6160223 YP_001789980.1 CDS Lcho_0943 NC_010524.1 1006317 1007081 D TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: mpt:Mpe_A3702 SecA-related metal-binding protein; yecA family protein 1006317..1007081 Leptothrix cholodnii SP-6 6160224 YP_001789981.1 CDS Lcho_0944 NC_010524.1 1007194 1007616 D PFAM: UspA domain protein; KEGG: mpt:Mpe_A3700 hypothetical protein; UspA domain-containing protein 1007194..1007616 Leptothrix cholodnii SP-6 6160225 YP_001789982.1 CDS Lcho_0945 NC_010524.1 1007728 1007988 R hypothetical protein complement(1007728..1007988) Leptothrix cholodnii SP-6 6160226 YP_001789983.1 CDS Lcho_0946 NC_010524.1 1008066 1009643 R KEGG: mpt:Mpe_A3516 phosphodiesterase/alkaline phosphatase D; alkaline phosphatase complement(1008066..1009643) Leptothrix cholodnii SP-6 6160160 YP_001789984.1 CDS Lcho_0947 NC_010524.1 1009654 1010589 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(1009654..1010589) Leptothrix cholodnii SP-6 6160161 YP_001789985.1 CDS Lcho_0948 NC_010524.1 1010746 1012053 D PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A3520 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 1010746..1012053 Leptothrix cholodnii SP-6 6160162 YP_001789986.1 CDS Lcho_0949 NC_010524.1 1012929 1013753 R hypothetical protein complement(1012929..1013753) Leptothrix cholodnii SP-6 6160163 YP_001789987.1 CDS Lcho_0950 NC_010524.1 1014244 1014867 D PFAM: Resolvase domain; KEGG: atc:AGR_L_1981 hypothetical protein; resolvase domain-containing protein 1014244..1014867 Leptothrix cholodnii SP-6 6160164 YP_001789988.1 CDS Lcho_0951 NC_010524.1 1014935 1015258 D hypothetical protein 1014935..1015258 Leptothrix cholodnii SP-6 6160165 YP_001789989.1 CDS Lcho_0952 NC_010524.1 1015263 1015472 D hypothetical protein 1015263..1015472 Leptothrix cholodnii SP-6 6160123 YP_001789990.1 CDS Lcho_0953 NC_010524.1 1015474 1016364 D hypothetical protein 1015474..1016364 Leptothrix cholodnii SP-6 6160124 YP_001789991.1 CDS Lcho_0954 NC_010524.1 1017147 1018313 R PFAM: integrase family protein; KEGG: pen:PSEEN1782 integrase; integrase family protein complement(1017147..1018313) Leptothrix cholodnii SP-6 6160125 YP_001789992.1 CDS Lcho_0955 NC_010524.1 1018439 1019521 R PFAM: transposase IS4 family protein; KEGG: eba:ebA3243 transposase, IS5 family; transposase IS4 family protein complement(1018439..1019521) Leptothrix cholodnii SP-6 6160126 YP_001789993.1 CDS Lcho_0956 NC_010524.1 1020556 1021224 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_1798 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(1020556..1021224) Leptothrix cholodnii SP-6 6160128 YP_001789994.1 CDS Lcho_0957 NC_010524.1 1021221 1021928 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1021221..1021928) Leptothrix cholodnii SP-6 6160502 YP_001789995.1 CDS Lcho_0958 NC_010524.1 1022010 1022741 R PFAM: OmpA/MotB domain protein; KEGG: mpt:Mpe_A2237 putative signal peptide protein; OmpA/MotB domain-containing protein complement(1022010..1022741) Leptothrix cholodnii SP-6 6160503 YP_001789996.1 CDS Lcho_0959 NC_010524.1 1023035 1025692 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1023035..1025692 Leptothrix cholodnii SP-6 6160504 YP_001789997.1 CDS Lcho_0960 NC_010524.1 1025692 1026270 D KEGG: rfr:Rfer_3193 hypothetical protein; hypothetical protein 1025692..1026270 Leptothrix cholodnii SP-6 6160505 YP_001789998.1 CDS Lcho_0961 NC_010524.1 1026373 1027497 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: mpt:Mpe_A2241 P-protein (bifunctional includes: chorismate mutase and prephenate dehydratase); chorismate mutase 1026373..1027497 Leptothrix cholodnii SP-6 6160506 YP_001789999.1 CDS Lcho_0962 NC_010524.1 1027526 1028407 D PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mpt:Mpe_A2242 prephenate dehydrogenase; prephenate dehydrogenase 1027526..1028407 Leptothrix cholodnii SP-6 6161471 YP_001790000.1 CDS Lcho_0963 NC_010524.1 1028428 1030527 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase 1028428..1030527 Leptothrix cholodnii SP-6 6161472 YP_001790001.1 CDS rpsA NC_010524.1 1030689 1032377 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1030689..1032377 Leptothrix cholodnii SP-6 6161473 YP_001790002.1 CDS Lcho_0965 NC_010524.1 1032397 1032735 D TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: mpt:Mpe_A2245 putative integration host factor beta-subunit (IHF-beta) protein; integration host factor subunit beta 1032397..1032735 Leptothrix cholodnii SP-6 6161474 YP_001790003.1 CDS Lcho_0966 NC_010524.1 1032881 1033201 D KEGG: mpt:Mpe_A2246 hypothetical protein; hypothetical protein 1032881..1033201 Leptothrix cholodnii SP-6 6161475 YP_001790004.1 CDS Lcho_0967 NC_010524.1 1033191 1034345 D KEGG: mpt:Mpe_A2247 hypothetical protein; hypothetical protein 1033191..1034345 Leptothrix cholodnii SP-6 6161476 YP_001790005.1 CDS Lcho_0968 NC_010524.1 1034379 1035308 R TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: dar:Daro_3928 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I complement(1034379..1035308) Leptothrix cholodnii SP-6 6163032 YP_001790006.1 CDS Lcho_0969 NC_010524.1 1035355 1036008 R KEGG: tbd:Tbd_0736 hypothetical protein; hypothetical protein complement(1035355..1036008) Leptothrix cholodnii SP-6 6163033 YP_001790007.1 CDS Lcho_0970 NC_010524.1 1036060 1037112 R KEGG: mca:MCA1515 hypothetical protein; hypothetical protein complement(1036060..1037112) Leptothrix cholodnii SP-6 6163034 YP_001790008.1 CDS Lcho_0971 NC_010524.1 1037109 1038101 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_3058 methyltransferase type 12; type 11 methyltransferase complement(1037109..1038101) Leptothrix cholodnii SP-6 6163035 YP_001790009.1 CDS Lcho_0972 NC_010524.1 1038303 1038974 D KEGG: ret:RHE_CH02994 hypothetical protein; hypothetical protein 1038303..1038974 Leptothrix cholodnii SP-6 6163036 YP_001790010.1 CDS Lcho_0973 NC_010524.1 1039011 1039853 D hypothetical protein 1039011..1039853 Leptothrix cholodnii SP-6 6163037 YP_001790011.1 CDS Lcho_0974 NC_010524.1 1039907 1040722 R KEGG: gdi:GDI2996 hypothetical protein; hypothetical protein complement(1039907..1040722) Leptothrix cholodnii SP-6 6163264 YP_001790012.1 CDS Lcho_0975 NC_010524.1 1040731 1041801 R PFAM: glycosyl transferase group 1; KEGG: fjo:Fjoh_2517 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1040731..1041801) Leptothrix cholodnii SP-6 6163265 YP_001790013.1 CDS Lcho_0976 NC_010524.1 1041809 1042756 R PFAM: glycosyl transferase family 9; KEGG: bpt:Bpet3111 ADP-heptose-LPS heptosyltransferase II; glycosyl transferase family protein complement(1041809..1042756) Leptothrix cholodnii SP-6 6163266 YP_001790014.1 CDS Lcho_0977 NC_010524.1 1043041 1043370 D KEGG: mpt:Mpe_A2249 hypothetical protein; hypothetical protein 1043041..1043370 Leptothrix cholodnii SP-6 6163267 YP_001790015.1 CDS Lcho_0978 NC_010524.1 1043407 1044675 R PFAM: Patatin; KEGG: mpt:Mpe_A2250 hypothetical protein; patatin complement(1043407..1044675) Leptothrix cholodnii SP-6 6163268 YP_001790016.1 CDS Lcho_0980 NC_010524.1 1045405 1048971 R KEGG: mpt:Mpe_A2252 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(1045405..1048971) Leptothrix cholodnii SP-6 6161993 YP_001790017.1 CDS Lcho_0981 NC_010524.1 1049032 1049775 D PFAM: Rhodanese domain protein; KEGG: aav:Aave_3026 rhodanese domain protein; rhodanese domain-containing protein 1049032..1049775 Leptothrix cholodnii SP-6 6161994 YP_001790018.1 CDS Lcho_0982 NC_010524.1 1049907 1050809 D TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_3803 transcriptional regulator; LysR family transcriptional regulator 1049907..1050809 Leptothrix cholodnii SP-6 6161995 YP_001790019.1 CDS Lcho_0983 NC_010524.1 1050811 1051773 R PFAM: GTPase EngC; KEGG: mpt:Mpe_A2914 putative ATP/GTP-binding protein; GTPase EngC complement(1050811..1051773) Leptothrix cholodnii SP-6 6161996 YP_001790020.1 CDS Lcho_0984 NC_010524.1 1051781 1053064 R PFAM: peptidase M48 Ste24p; KEGG: mpt:Mpe_A2912 STE24 endopeptidase; Ste24 endopeptidase complement(1051781..1053064) Leptothrix cholodnii SP-6 6161997 YP_001790021.1 CDS Lcho_0985 NC_010524.1 1053136 1053699 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1053136..1053699 Leptothrix cholodnii SP-6 6161998 YP_001790022.1 CDS Lcho_0986 NC_010524.1 1053716 1054183 R PFAM: regulatory protein MarR; KEGG: rpe:RPE_3794 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1053716..1054183) Leptothrix cholodnii SP-6 6162177 YP_001790023.1 CDS Lcho_0987 NC_010524.1 1054189 1055982 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: dac:Daci_2761 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(1054189..1055982) Leptothrix cholodnii SP-6 6162178 YP_001790024.1 CDS Lcho_0988 NC_010524.1 1056079 1056822 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0803 ABC transporter related; ABC transporter-like protein complement(1056079..1056822) Leptothrix cholodnii SP-6 6162179 YP_001790025.1 CDS Lcho_0989 NC_010524.1 1056822 1058603 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0802 ABC transporter related; ABC transporter-like protein complement(1056822..1058603) Leptothrix cholodnii SP-6 6162180 YP_001790026.1 CDS Lcho_0990 NC_010524.1 1058605 1059642 R PFAM: inner-membrane translocator; KEGG: pna:Pnap_0801 inner-membrane translocator; inner-membrane translocator complement(1058605..1059642) Leptothrix cholodnii SP-6 6162181 YP_001790027.1 CDS Lcho_0991 NC_010524.1 1059647 1060789 R PFAM: Extracellular ligand-binding receptor; KEGG: pna:Pnap_0800 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1059647..1060789) Leptothrix cholodnii SP-6 6162182 YP_001790028.1 CDS Lcho_0992 NC_010524.1 1060930 1061694 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_0271 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1060930..1061694) Leptothrix cholodnii SP-6 6162440 YP_001790029.1 CDS Lcho_0993 NC_010524.1 1061706 1063586 R catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase complement(1061706..1063586) Leptothrix cholodnii SP-6 6162441 YP_001790030.1 CDS Lcho_0994 NC_010524.1 1063583 1064404 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1063583..1064404) Leptothrix cholodnii SP-6 6162442 YP_001790031.1 CDS Lcho_0995 NC_010524.1 1064574 1065437 D PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0275 amidohydrolase 2; amidohydrolase 2 1064574..1065437 Leptothrix cholodnii SP-6 6162443 YP_001790032.1 CDS Lcho_0996 NC_010524.1 1065631 1065942 D PFAM: cytochrome c class I; KEGG: pol:Bpro_0336 cytochrome c, class I; cytochrome c class I 1065631..1065942 Leptothrix cholodnii SP-6 6162444 YP_001790033.1 CDS Lcho_0997 NC_010524.1 1066104 1066877 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0084 ferredoxin--NADP(+) reductase; oxidoreductase FAD/NAD(P)-binding subunit complement(1066104..1066877) Leptothrix cholodnii SP-6 6162445 YP_001790034.1 CDS Lcho_0998 NC_010524.1 1067076 1067708 R PFAM: Chemotaxis phosphatase CheZ; KEGG: mpt:Mpe_A2875 chemotaxis protein CheZ; chemotaxis phosphatase, CheZ complement(1067076..1067708) Leptothrix cholodnii SP-6 6163301 YP_001790035.1 CDS Lcho_0999 NC_010524.1 1067728 1068126 R PFAM: response regulator receiver; KEGG: aav:Aave_4410 response regulator receiver protein; response regulator receiver protein complement(1067728..1068126) Leptothrix cholodnii SP-6 6163302 YP_001790036.1 CDS Lcho_1000 NC_010524.1 1068204 1069166 R PFAM: OmpA/MotB domain protein; KEGG: mpt:Mpe_A2873 chemotaxis signal transduction protein CheY; OmpA/MotB domain-containing protein complement(1068204..1069166) Leptothrix cholodnii SP-6 6163303 YP_001790037.1 CDS Lcho_1001 NC_010524.1 1069180 1070037 R KEGG: mpt:Mpe_A2872 chemotaxis signal transduction protein CheY; chemotaxis signal transduction protein CheY complement(1069180..1070037) Leptothrix cholodnii SP-6 6163304 YP_001790038.1 CDS Lcho_1002 NC_010524.1 1070114 1070887 R KEGG: ajs:Ajs_0032 methyltransferase type 12; type 12 methyltransferase complement(1070114..1070887) Leptothrix cholodnii SP-6 6163305 YP_001790039.1 CDS Lcho_1003 NC_010524.1 1071050 1072321 R KEGG: mpt:Mpe_A2795 hypothetical protein; putative metal dependent phosphohydrolase complement(1071050..1072321) Leptothrix cholodnii SP-6 6163306 YP_001790040.1 CDS Lcho_1004 NC_010524.1 1072487 1073023 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(1072487..1073023) Leptothrix cholodnii SP-6 6160166 YP_001790041.1 CDS Lcho_1005 NC_010524.1 1073085 1073408 R PFAM: flagellar transcriptional activator; KEGG: mpt:Mpe_A2869 transcriptional regulator; flagellar transcriptional activator complement(1073085..1073408) Leptothrix cholodnii SP-6 6160167 YP_001790042.1 CDS Lcho_1006 NC_010524.1 1073626 1074951 R PFAM: Tetratricopeptide TPR_4; KEGG: rca:Rcas_1625 TPR repeat-containing protein; hypothetical protein complement(1073626..1074951) Leptothrix cholodnii SP-6 6160168 YP_001790043.1 CDS Lcho_1007 NC_010524.1 1075099 1076601 R KEGG: cph:Cpha266_1838 hypothetical protein; hypothetical protein complement(1075099..1076601) Leptothrix cholodnii SP-6 6160169 YP_001790044.1 CDS Lcho_1008 NC_010524.1 1076638 1078656 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: swi:Swit_2139 TPR repeat-containing protein; hypothetical protein complement(1076638..1078656) Leptothrix cholodnii SP-6 6160170 YP_001790045.1 CDS Lcho_1009 NC_010524.1 1079038 1079898 D PFAM: flagellin domain protein; KEGG: ajs:Ajs_3813 flagellin domain protein; flagellin domain-containing protein 1079038..1079898 Leptothrix cholodnii SP-6 6160171 YP_001790046.1 CDS Lcho_1010 NC_010524.1 1080213 1081076 D PFAM: flagellin domain protein; KEGG: ajs:Ajs_3813 flagellin domain protein; flagellin domain-containing protein 1080213..1081076 Leptothrix cholodnii SP-6 6160135 YP_001790047.1 CDS Lcho_1011 NC_010524.1 1081216 1082655 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: mpt:Mpe_A2865 flagellar capping protein; flagellar hook-associated 2 domain-containing protein 1081216..1082655 Leptothrix cholodnii SP-6 6160136 YP_001790048.1 CDS Lcho_1012 NC_010524.1 1082799 1083218 D PFAM: flagellar protein FliS; KEGG: mpt:Mpe_A2864 flagellar protein; flagellar protein FliS 1082799..1083218 Leptothrix cholodnii SP-6 6160137 YP_001790049.1 CDS Lcho_1013 NC_010524.1 1083276 1083620 D KEGG: mpt:Mpe_A2863 flagellar chaperone; flagellar chaperone 1083276..1083620 Leptothrix cholodnii SP-6 6160138 YP_001790050.1 CDS Lcho_1014 NC_010524.1 1083668 1084423 D PFAM: type IV pilus assembly PilZ; KEGG: mpt:Mpe_A2862 glycosyltransferase-like protein; type IV pilus assembly PilZ 1083668..1084423 Leptothrix cholodnii SP-6 6160139 YP_001790051.1 CDS Lcho_1015 NC_010524.1 1084460 1084828 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: mpt:Mpe_A0564 flagellar hook-basal body protein; flagellar hook-basal body complex subunit FliE complement(1084460..1084828) Leptothrix cholodnii SP-6 6160140 YP_001790052.1 CDS Lcho_1016 NC_010524.1 1085026 1086756 D TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: mpt:Mpe_A0565 flagellar biosynthesis lipoprotein; flagellar M-ring protein FliF 1085026..1086756 Leptothrix cholodnii SP-6 6159861 YP_001790053.1 CDS Lcho_1017 NC_010524.1 1086778 1087779 D PFAM: flagellar motor switch protein FliG; KEGG: mpt:Mpe_A0566 flagellar motor switch protein; flagellar motor switch protein FliG 1086778..1087779 Leptothrix cholodnii SP-6 6159862 YP_001790054.1 CDS Lcho_1018 NC_010524.1 1087763 1088548 D PFAM: flagellar assembly protein FliH; KEGG: mpt:Mpe_A0567 flagellar biosynthesis protein; flagellar assembly protein FliH 1087763..1088548 Leptothrix cholodnii SP-6 6159863 YP_001790055.1 CDS Lcho_1019 NC_010524.1 1088545 1089945 D KEGG: mpt:Mpe_A0568 flagellar biosynthesis ATPase; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; flagellar protein export ATPase FliI 1088545..1089945 Leptothrix cholodnii SP-6 6159864 YP_001790056.1 CDS Lcho_1020 NC_010524.1 1089984 1090463 D TIGRFAM: flagellar export protein FliJ; KEGG: mpt:Mpe_A0569 flagellar biosynthesis chaperone; flagellar export protein FliJ 1089984..1090463 Leptothrix cholodnii SP-6 6159865 YP_001790057.1 CDS Lcho_1021 NC_010524.1 1090482 1091954 D PFAM: flagellar hook-length control protein; KEGG: mpt:Mpe_A0570 flagellar hook-length control protein; flagellar hook-length control protein 1090482..1091954 Leptothrix cholodnii SP-6 6159866 YP_001790058.1 CDS Lcho_1022 NC_010524.1 1092131 1092733 D PFAM: flagellar basal body-associated protein FliL; KEGG: mpt:Mpe_A0571 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 1092131..1092733 Leptothrix cholodnii SP-6 6159705 YP_001790059.1 CDS Lcho_1023 NC_010524.1 1092759 1093763 D PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: mpt:Mpe_A0572 flagellar motor switch protein; flagellar motor switch protein FliM 1092759..1093763 Leptothrix cholodnii SP-6 6159706 YP_001790060.1 CDS Lcho_1024 NC_010524.1 1093753 1094214 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: mpt:Mpe_A0573 flagellar motor switch protein; flagellar motor switch protein FliN 1093753..1094214 Leptothrix cholodnii SP-6 6159707 YP_001790061.1 CDS Lcho_1025 NC_010524.1 1094224 1094646 D PFAM: flagellar biosynthesis protein FliO; KEGG: mpt:Mpe_A0574 flagellar biogenesis protein; flagellar biosynthesis protein FliO 1094224..1094646 Leptothrix cholodnii SP-6 6159708 YP_001790062.1 CDS fliP NC_010524.1 1094649 1095437 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1094649..1095437 Leptothrix cholodnii SP-6 6159709 YP_001790063.1 CDS Lcho_1027 NC_010524.1 1095472 1095741 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: mpt:Mpe_A0576 flagellar biosynthesis protein; flagellar biosynthetic protein FliQ 1095472..1095741 Leptothrix cholodnii SP-6 6159710 YP_001790064.1 CDS Lcho_1028 NC_010524.1 1095754 1096515 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: mpt:Mpe_A0577 flagellar biosynthesis protein; flagellar biosynthetic protein FliR 1095754..1096515 Leptothrix cholodnii SP-6 6159975 YP_001790065.1 CDS Lcho_1029 NC_010524.1 1096540 1097103 D KEGG: mpt:Mpe_A0322 putative transmembrane protein; putative transmembrane protein 1096540..1097103 Leptothrix cholodnii SP-6 6159976 YP_001790066.1 CDS Lcho_1030 NC_010524.1 1097145 1097600 D PFAM: PTS system fructose subfamily IIA component; KEGG: mpt:Mpe_A0323 PTS system, unknown pentitol phosphotransferase enzyme II component, putative; PTS system fructose subfamily transporter subunit IIA 1097145..1097600 Leptothrix cholodnii SP-6 6159977 YP_001790067.1 CDS Lcho_1031 NC_010524.1 1097569 1097838 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: aav:Aave_0353 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 1097569..1097838 Leptothrix cholodnii SP-6 6159978 YP_001790068.1 CDS Lcho_1032 NC_010524.1 1097891 1098751 R KEGG: mpt:Mpe_A0325 hypothetical protein; hypothetical protein complement(1097891..1098751) Leptothrix cholodnii SP-6 6159979 YP_001790069.1 CDS Lcho_1033 NC_010524.1 1098901 1100712 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: mpt:Mpe_A0326 putative phosphoenolpyruvate-protein phosphotransferase transmembrane; phosphoenolpyruvate-protein phosphotransferase 1098901..1100712 Leptothrix cholodnii SP-6 6159980 YP_001790070.1 CDS Lcho_1034 NC_010524.1 1106795 1106956 D hypothetical protein 1106795..1106956 Leptothrix cholodnii SP-6 6160697 YP_001790071.1 CDS Lcho_1035 NC_010524.1 1107014 1107505 D PFAM: transposase IS3/IS911 family protein; KEGG: aeh:Mlg_2336 hypothetical protein; transposase IS3/IS911 family protein 1107014..1107505 Leptothrix cholodnii SP-6 6160698 YP_001790072.1 CDS Lcho_1036 NC_010524.1 1107502 1107720 D hypothetical protein 1107502..1107720 Leptothrix cholodnii SP-6 6163117 YP_001790073.1 CDS Lcho_1038 NC_010524.1 1108537 1110003 D PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6227 integrase, catalytic region; integrase catalytic subunit 1108537..1110003 Leptothrix cholodnii SP-6 6163119 YP_001790074.1 CDS Lcho_1039 NC_010524.1 1110000 1110824 D PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain protein; KEGG: pla:Plav_3437 IstB domain protein ATP-binding protein; IstB ATP-binding domain-containing protein 1110000..1110824 Leptothrix cholodnii SP-6 6163120 YP_001790075.1 CDS Lcho_1041 NC_010524.1 1111587 1112312 R KEGG: mpt:Mpe_A2256 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(1111587..1112312) Leptothrix cholodnii SP-6 6163596 YP_001790076.1 CDS Lcho_1042 NC_010524.1 1112326 1112664 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: mpt:Mpe_A2257 putative ferredoxin (2Fe-2S) protein; ferredoxin, 2Fe-2S type, ISC system complement(1112326..1112664) Leptothrix cholodnii SP-6 6163597 YP_001790077.1 CDS hscA NC_010524.1 1112680 1114545 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(1112680..1114545) Leptothrix cholodnii SP-6 6163598 YP_001790078.1 CDS Lcho_1044 NC_010524.1 1114567 1115085 R TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSC20 oligomerisation; KEGG: mpt:Mpe_A2259 chaperone protein; co-chaperone Hsc20 complement(1114567..1115085) Leptothrix cholodnii SP-6 6163599 YP_001790079.1 CDS Lcho_1045 NC_010524.1 1115162 1115494 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: ajs:Ajs_2142 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(1115162..1115494) Leptothrix cholodnii SP-6 6163600 YP_001790080.1 CDS Lcho_1046 NC_010524.1 1115523 1115909 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: mpt:Mpe_A2261 (Fe-S) cluster formation/repair protein; FeS cluster assembly scaffold IscU complement(1115523..1115909) Leptothrix cholodnii SP-6 6163459 YP_001790081.1 CDS Lcho_1047 NC_010524.1 1115934 1117169 R TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mpt:Mpe_A2262 cysteine desulfurase; cysteine desulfurase IscS complement(1115934..1117169) Leptothrix cholodnii SP-6 6163460 YP_001790082.1 CDS Lcho_1048 NC_010524.1 1117226 1117759 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mpt:Mpe_A2263 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(1117226..1117759) Leptothrix cholodnii SP-6 6163461 YP_001790083.1 CDS Lcho_1049 NC_010524.1 1117895 1118392 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mpt:Mpe_A2264 low molecular weight tyrosine-phosphatase; protein tyrosine phosphatase complement(1117895..1118392) Leptothrix cholodnii SP-6 6163462 YP_001790084.1 CDS Lcho_1050 NC_010524.1 1118389 1120500 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1118389..1120500) Leptothrix cholodnii SP-6 6163463 YP_001790085.1 CDS Lcho_1051 NC_010524.1 1120591 1121787 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1120591..1121787 Leptothrix cholodnii SP-6 6163464 YP_001790086.1 CDS Lcho_1052 NC_010524.1 1121883 1122866 R TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mpt:Mpe_A0901 alcohol dehydrogenase; quinone oxidoreductase complement(1121883..1122866) Leptothrix cholodnii SP-6 6163130 YP_001790087.1 CDS Lcho_1053 NC_010524.1 1122984 1123259 R hypothetical protein complement(1122984..1123259) Leptothrix cholodnii SP-6 6163131 YP_001790088.1 CDS Lcho_1054 NC_010524.1 1123329 1125077 R PFAM: Metal-dependent hydrolase HDOD; KEGG: rfr:Rfer_2728 serine/threonine protein kinase; putative signal transduction protein complement(1123329..1125077) Leptothrix cholodnii SP-6 6163132 YP_001790089.1 CDS Lcho_1055 NC_010524.1 1125185 1126222 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(1125185..1126222) Leptothrix cholodnii SP-6 6163133 YP_001790090.1 CDS Lcho_1056 NC_010524.1 1126259 1126921 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1126259..1126921 Leptothrix cholodnii SP-6 6163134 YP_001790091.1 CDS Lcho_1057 NC_010524.1 1126961 1128352 R KEGG: mmw:Mmwyl1_2332 hypothetical protein; hypothetical protein complement(1126961..1128352) Leptothrix cholodnii SP-6 6163135 YP_001790092.1 CDS Lcho_1058 NC_010524.1 1128343 1128657 R KEGG: abo:ABO_2005 hypothetical protein; hypothetical protein complement(1128343..1128657) Leptothrix cholodnii SP-6 6162783 YP_001790093.1 CDS Lcho_1059 NC_010524.1 1128773 1129579 R KEGG: mpt:Mpe_A1145 hypothetical protein; hypothetical protein complement(1128773..1129579) Leptothrix cholodnii SP-6 6162784 YP_001790094.1 CDS Lcho_1060 NC_010524.1 1129587 1130573 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(1129587..1130573) Leptothrix cholodnii SP-6 6162785 YP_001790095.1 CDS Lcho_1061 NC_010524.1 1130581 1130916 R KEGG: pna:Pnap_1477 hypothetical protein; hypothetical protein complement(1130581..1130916) Leptothrix cholodnii SP-6 6162786 YP_001790096.1 CDS Lcho_1062 NC_010524.1 1130970 1133774 D KEGG: mpt:Mpe_A1148 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 1130970..1133774 Leptothrix cholodnii SP-6 6162787 YP_001790097.1 CDS Lcho_1063 NC_010524.1 1133771 1134871 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_2544 diguanylate cyclase; diguanylate cyclase 1133771..1134871 Leptothrix cholodnii SP-6 6162788 YP_001790098.1 CDS Lcho_1064 NC_010524.1 1134913 1135428 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pna:Pnap_2042 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1134913..1135428 Leptothrix cholodnii SP-6 6162562 YP_001790099.1 CDS Lcho_1065 NC_010524.1 1135527 1136534 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mes:Meso_4517 oxidoreductase-like; oxidoreductase domain-containing protein 1135527..1136534 Leptothrix cholodnii SP-6 6162563 YP_001790100.1 CDS Lcho_1066 NC_010524.1 1136567 1138102 R PFAM: Methyltransferase type 11; KEGG: sit:TM1040_3839 methyltransferase type 11; type 11 methyltransferase complement(1136567..1138102) Leptothrix cholodnii SP-6 6162564 YP_001790101.1 CDS Lcho_1067 NC_010524.1 1138261 1138869 R KEGG: mfa:Mfla_1132 protein of unknown function DUF1555; hypothetical protein complement(1138261..1138869) Leptothrix cholodnii SP-6 6162565 YP_001790102.1 CDS Lcho_1068 NC_010524.1 1139044 1139811 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: azo:azo3212 ParA family protein; cobyrinic acid ac-diamide synthase complement(1139044..1139811) Leptothrix cholodnii SP-6 6162566 YP_001790103.1 CDS Lcho_1069 NC_010524.1 1139914 1141179 R PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: pna:Pnap_1281 major facilitator superfamily MFS_1; major facilitator transporter complement(1139914..1141179) Leptothrix cholodnii SP-6 6162567 YP_001790104.1 CDS Lcho_1070 NC_010524.1 1141206 1141958 R PFAM: Urease accessory protein UreF; KEGG: mpt:Mpe_A0664 urease accessory protein; urease accessory protein UreF complement(1141206..1141958) Leptothrix cholodnii SP-6 6162340 YP_001790105.1 CDS ureE NC_010524.1 1141958 1142662 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(1141958..1142662) Leptothrix cholodnii SP-6 6162341 YP_001790106.1 CDS Lcho_1072 NC_010524.1 1142783 1143304 R PFAM: protein of unknown function DUF477; KEGG: aav:Aave_0379 protein of unknown function DUF477; hypothetical protein complement(1142783..1143304) Leptothrix cholodnii SP-6 6162342 YP_001790107.1 CDS Lcho_1073 NC_010524.1 1143304 1144245 R PFAM: protein of unknown function DUF477; KEGG: pna:Pnap_0258 protein of unknown function DUF477; hypothetical protein complement(1143304..1144245) Leptothrix cholodnii SP-6 6162343 YP_001790108.1 CDS Lcho_1074 NC_010524.1 1144259 1144873 R PFAM: LemA family protein; KEGG: mpt:Mpe_A0145 LemA protein; LemA family protein complement(1144259..1144873) Leptothrix cholodnii SP-6 6162344 YP_001790109.1 CDS Lcho_1075 NC_010524.1 1145034 1145513 D SMART: Rhodanese domain protein; rhodanese domain-containing protein 1145034..1145513 Leptothrix cholodnii SP-6 6162345 YP_001790110.1 CDS ureC NC_010524.1 1145498 1147225 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(1145498..1147225) Leptothrix cholodnii SP-6 6162274 YP_001790111.1 CDS ureB NC_010524.1 1147313 1147618 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(1147313..1147618) Leptothrix cholodnii SP-6 6162275 YP_001790112.1 CDS Lcho_1078 NC_010524.1 1147618 1147797 R hypothetical protein complement(1147618..1147797) Leptothrix cholodnii SP-6 6162276 YP_001790113.1 CDS Lcho_1079 NC_010524.1 1147851 1148153 R KEGG: pol:Bpro_1352 urease subunit gamma; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region; urease subunit gamma complement(1147851..1148153) Leptothrix cholodnii SP-6 6162277 YP_001790114.1 CDS Lcho_1080 NC_010524.1 1148253 1149356 R KEGG: rso:RS02334 probable signal peptide protein; putative signal peptide protein complement(1148253..1149356) Leptothrix cholodnii SP-6 6162278 YP_001790115.1 CDS Lcho_1081 NC_010524.1 1149365 1150930 R KEGG: tdn:Tmden_1952 hypothetical protein; hypothetical protein complement(1149365..1150930) Leptothrix cholodnii SP-6 6162279 YP_001790116.1 CDS Lcho_1082 NC_010524.1 1151306 1154968 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A0670 sensor histidine kinase/response regulator; histidine kinase 1151306..1154968 Leptothrix cholodnii SP-6 6161521 YP_001790117.1 CDS Lcho_1083 NC_010524.1 1154961 1155911 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: aav:Aave_3524 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 1154961..1155911 Leptothrix cholodnii SP-6 6161522 YP_001790118.1 CDS Lcho_1084 NC_010524.1 1156020 1157297 D TIGRFAM: urea ABC transporter, urea binding protein; KEGG: mpt:Mpe_A0697 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; urea ABC transporter urea-binding protein 1156020..1157297 Leptothrix cholodnii SP-6 6161523 YP_001790119.1 CDS Lcho_1085 NC_010524.1 1157448 1159034 D TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: pol:Bpro_1394 inner-membrane translocator; urea ABC transporter permease UrtB 1157448..1159034 Leptothrix cholodnii SP-6 6161524 YP_001790120.1 CDS Lcho_1086 NC_010524.1 1159031 1160149 D TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A0699 putative permease transporter transmembrane protein; urea ABC transporter permease UrtC 1159031..1160149 Leptothrix cholodnii SP-6 6161525 YP_001790121.1 CDS Lcho_1087 NC_010524.1 1160146 1161036 D TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: mpt:Mpe_A0700 branched-chain amino acid ABC transporter, ATP-binding protein, putative; urea ABC transporter ATP-binding protein UrtD 1160146..1161036 Leptothrix cholodnii SP-6 6161526 YP_001790122.1 CDS Lcho_1088 NC_010524.1 1161046 1161738 D KEGG: mpt:Mpe_A0701 branched-chain amino acid ABC transporter, ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE 1161046..1161738 Leptothrix cholodnii SP-6 6161515 YP_001790123.1 CDS Lcho_1089 NC_010524.1 1161778 1163154 D PFAM: HI0933 family protein; KEGG: mpt:Mpe_A1785 hypothetical protein; hypothetical protein 1161778..1163154 Leptothrix cholodnii SP-6 6161516 YP_001790124.1 CDS Lcho_1090 NC_010524.1 1163214 1163885 R KEGG: mfa:Mfla_0451 alkaline phosphatase; hypothetical protein complement(1163214..1163885) Leptothrix cholodnii SP-6 6161517 YP_001790125.1 CDS Lcho_1091 NC_010524.1 1164193 1164882 R PFAM: protein of unknown function DUF1555; KEGG: mfa:Mfla_1122 hypothetical protein; hypothetical protein complement(1164193..1164882) Leptothrix cholodnii SP-6 6161518 YP_001790126.1 CDS Lcho_1092 NC_010524.1 1165091 1165927 R PFAM: Urease accessory protein UreD; KEGG: aav:Aave_1082 urease accessory protein UreD; urease accessory protein UreD complement(1165091..1165927) Leptothrix cholodnii SP-6 6161519 YP_001790127.1 CDS Lcho_1093 NC_010524.1 1166555 1166773 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: azo:azo2121 cold shock-like protein; cold-shock DNA-binding domain-containing protein complement(1166555..1166773) Leptothrix cholodnii SP-6 6161520 YP_001790128.1 CDS Lcho_1094 NC_010524.1 1167015 1167515 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mpt:Mpe_A0774 hypothetical protein; CMP/dCMP deaminase complement(1167015..1167515) Leptothrix cholodnii SP-6 6160930 YP_001790129.1 CDS Lcho_1095 NC_010524.1 1167552 1168319 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_1140 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1167552..1168319) Leptothrix cholodnii SP-6 6160931 YP_001790130.1 CDS Lcho_1096 NC_010524.1 1168316 1169134 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_1139 ABC transporter related; ABC transporter-like protein complement(1168316..1169134) Leptothrix cholodnii SP-6 6160932 YP_001790131.1 CDS Lcho_1097 NC_010524.1 1169142 1170230 R PFAM: NMT1/THI5 like domain protein; KEGG: aav:Aave_1093 twin-arginine translocation pathway signal; NMT1/THI5-like domain-containing protein complement(1169142..1170230) Leptothrix cholodnii SP-6 6160933 YP_001790132.1 CDS Lcho_1098 NC_010524.1 1170432 1171667 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mpt:Mpe_A0775 hypothetical protein; peptidase dimerisation domain-containing protein complement(1170432..1171667) Leptothrix cholodnii SP-6 6160934 YP_001790133.1 CDS Lcho_1099 NC_010524.1 1171664 1173442 R putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia; putative bifunctional OHCU decarboxylase/allantoate amidohydrolase complement(1171664..1173442) Leptothrix cholodnii SP-6 6160935 YP_001790134.1 CDS Lcho_1100 NC_010524.1 1173563 1174573 R KEGG: pna:Pnap_0355 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein complement(1173563..1174573) Leptothrix cholodnii SP-6 6160593 YP_001790135.1 CDS Lcho_1101 NC_010524.1 1174570 1175349 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A0778 putative transcription regulator protein; GntR family transcriptional regulator complement(1174570..1175349) Leptothrix cholodnii SP-6 6160594 YP_001790136.1 CDS Lcho_1102 NC_010524.1 1175428 1175784 D TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: mpt:Mpe_A0779 putative purine catabolism-related protein; hydroxyisourate hydrolase 1175428..1175784 Leptothrix cholodnii SP-6 6160595 YP_001790137.1 CDS Lcho_1103 NC_010524.1 1175845 1177047 D PFAM: protein of unknown function DUF989; KEGG: pna:Pnap_0357 protein of unknown function DUF989; hypothetical protein 1175845..1177047 Leptothrix cholodnii SP-6 6160596 YP_001790138.1 CDS Lcho_1104 NC_010524.1 1177088 1178767 D TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: ajs:Ajs_3401 Na/Pi-cotransporter II-related protein; Na/Pi-cotransporter II-like protein 1177088..1178767 Leptothrix cholodnii SP-6 6160597 YP_001790139.1 CDS Lcho_1105 NC_010524.1 1178799 1180412 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mms:mma_0510 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1178799..1180412) Leptothrix cholodnii SP-6 6160598 YP_001790140.1 CDS Lcho_1106 NC_010524.1 1180578 1182770 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: mpt:Mpe_A0214 signal transduction protein; diguanylate cyclase/phosphodiesterase complement(1180578..1182770) Leptothrix cholodnii SP-6 6161307 YP_001790141.1 CDS Lcho_1107 NC_010524.1 1182931 1184439 D PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: spe:Spro_3547 transcriptional regulator, AraC family; AraC family transcriptional regulator 1182931..1184439 Leptothrix cholodnii SP-6 6161308 YP_001790142.1 CDS Lcho_1108 NC_010524.1 1184448 1184963 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: aav:Aave_2824 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1184448..1184963 Leptothrix cholodnii SP-6 6161309 YP_001790143.1 CDS Lcho_1109 NC_010524.1 1184960 1185847 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc2507 probable transmembrane protein; hypothetical protein 1184960..1185847 Leptothrix cholodnii SP-6 6161310 YP_001790144.1 CDS Lcho_1110 NC_010524.1 1186030 1186797 R KEGG: mdo:100019988 similar to ifapsoriasin; ifapsoriasin-like protein complement(1186030..1186797) Leptothrix cholodnii SP-6 6161311 YP_001790145.1 CDS Lcho_1111 NC_010524.1 1186986 1187960 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: aav:Aave_2596 gluconolactonase; gluconolactonase complement(1186986..1187960) Leptothrix cholodnii SP-6 6161312 YP_001790146.1 CDS Lcho_1112 NC_010524.1 1187964 1189247 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppf:Pput_1201 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1187964..1189247) Leptothrix cholodnii SP-6 6162294 YP_001790147.1 CDS Lcho_1113 NC_010524.1 1189247 1189798 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ppf:Pput_1202 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(1189247..1189798) Leptothrix cholodnii SP-6 6162295 YP_001790148.1 CDS Lcho_1114 NC_010524.1 1189881 1190867 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pmy:Pmen_3301 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit Dctp complement(1189881..1190867) Leptothrix cholodnii SP-6 6162296 YP_001790149.1 CDS Lcho_1115 NC_010524.1 1190945 1191763 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: vei:Veis_1238 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1190945..1191763) Leptothrix cholodnii SP-6 6162297 YP_001790150.1 CDS Lcho_1116 NC_010524.1 1191915 1192649 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A0971 regulatory protein, GntR; GntR family transcriptional regulator 1191915..1192649 Leptothrix cholodnii SP-6 6162298 YP_001790151.1 CDS Lcho_1117 NC_010524.1 1192774 1193685 D catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 1192774..1193685 Leptothrix cholodnii SP-6 6162299 YP_001790152.1 CDS Lcho_1118 NC_010524.1 1193738 1195072 D KEGG: pol:Bpro_3421 glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 1193738..1195072 Leptothrix cholodnii SP-6 6162140 YP_001790153.1 CDS Lcho_1119 NC_010524.1 1195111 1196550 D PFAM: Aldehyde Dehydrogenase_; KEGG: pol:Bpro_3422 aldehyde dehydrogenase; aldehyde dehydrogenase 1195111..1196550 Leptothrix cholodnii SP-6 6162141 YP_001790154.1 CDS Lcho_1120 NC_010524.1 1196582 1197535 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A0972 hypothetical protein; hypothetical protein 1196582..1197535 Leptothrix cholodnii SP-6 6162142 YP_001790155.1 CDS Lcho_1121 NC_010524.1 1197549 1198493 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rme:Rmet_5274 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 1197549..1198493 Leptothrix cholodnii SP-6 6162143 YP_001790156.1 CDS Lcho_1122 NC_010524.1 1198519 1199316 D PFAM: HpcH/HpaI aldolase; KEGG: mpt:Mpe_A0974 2-dehydro-3-deoxyglucarate aldolase; HpcH/HpaI aldolase 1198519..1199316 Leptothrix cholodnii SP-6 6162144 YP_001790157.1 CDS Lcho_1123 NC_010524.1 1199345 1200244 D KEGG: pol:Bpro_3102 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 1199345..1200244 Leptothrix cholodnii SP-6 6162145 YP_001790158.1 CDS Lcho_1124 NC_010524.1 1200420 1203473 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: mpt:Mpe_A2969 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; general secretion pathway protein E 1200420..1203473 Leptothrix cholodnii SP-6 6163738 YP_001790159.1 CDS Lcho_1125 NC_010524.1 1203474 1205429 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: mpt:Mpe_A2031 putative DNA mismatch repair protein; DNA mismatch repair protein MutL complement(1203474..1205429) Leptothrix cholodnii SP-6 6163739 YP_001790160.1 CDS Lcho_1126 NC_010524.1 1205482 1206600 R PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_3540 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1205482..1206600) Leptothrix cholodnii SP-6 6163740 YP_001790161.1 CDS Lcho_1127 NC_010524.1 1206764 1207423 D PFAM: SNARE associated Golgi protein; KEGG: mpt:Mpe_A2029 DedA protein (DSG-1 protein); hypothetical protein 1206764..1207423 Leptothrix cholodnii SP-6 6163741 YP_001790162.1 CDS Lcho_1128 NC_010524.1 1207448 1208965 R KEGG: dac:Daci_1894 hypothetical protein; hypothetical protein complement(1207448..1208965) Leptothrix cholodnii SP-6 6163742 YP_001790163.1 CDS Lcho_1129 NC_010524.1 1208991 1210562 R PFAM: cell wall hydrolase/autolysin; KEGG: mpt:Mpe_A2027 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(1208991..1210562) Leptothrix cholodnii SP-6 6163743 YP_001790164.1 CDS Lcho_1130 NC_010524.1 1210591 1211073 R PFAM: protein of unknown function UPF0079; KEGG: mpt:Mpe_A2026 hypothetical protein; hypothetical protein complement(1210591..1211073) Leptothrix cholodnii SP-6 6163901 YP_001790165.1 CDS Lcho_1131 NC_010524.1 1211077 1212162 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: mpt:Mpe_A2025 putative iron-sulfur 4Fe-4S ferredoxin protein; iron-sulfur cluster-binding protein 1211077..1212162 Leptothrix cholodnii SP-6 6163902 YP_001790166.1 CDS Lcho_1132 NC_010524.1 1212172 1213479 R PFAM: MOFRL domain protein; KEGG: azo:azo1162 probable hydroxypyruvate reductase; hydroxypyruvate reductase complement(1212172..1213479) Leptothrix cholodnii SP-6 6163903 YP_001790167.1 CDS Lcho_1133 NC_010524.1 1213551 1214456 R KEGG: pol:Bpro_4563 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(1213551..1214456) Leptothrix cholodnii SP-6 6163904 YP_001790168.1 CDS Lcho_1134 NC_010524.1 1214488 1215267 R KEGG: pol:Bpro_4562 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase complement(1214488..1215267) Leptothrix cholodnii SP-6 6163905 YP_001790169.1 CDS Lcho_1135 NC_010524.1 1215282 1217072 R catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase complement(1215282..1217072) Leptothrix cholodnii SP-6 6163906 YP_001790170.1 CDS Lcho_1136 NC_010524.1 1217198 1218064 R KEGG: rfr:Rfer_0499 hypothetical protein; hypothetical protein complement(1217198..1218064) Leptothrix cholodnii SP-6 6163809 YP_001790171.1 CDS Lcho_1137 NC_010524.1 1218061 1218639 R KEGG: rfr:Rfer_0498 hypothetical protein; hypothetical protein complement(1218061..1218639) Leptothrix cholodnii SP-6 6163810 YP_001790172.1 CDS Lcho_1138 NC_010524.1 1218654 1219892 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0497 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding subunit complement(1218654..1219892) Leptothrix cholodnii SP-6 6163811 YP_001790173.1 CDS Lcho_1139 NC_010524.1 1219897 1219995 R hypothetical protein complement(1219897..1219995) Leptothrix cholodnii SP-6 6163812 YP_001790174.1 CDS Lcho_1140 NC_010524.1 1220088 1221452 R catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase complement(1220088..1221452) Leptothrix cholodnii SP-6 6163813 YP_001790175.1 CDS Lcho_1141 NC_010524.1 1221544 1223016 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: mpt:Mpe_A0781 putative permease transmembrane protein; xanthine permease complement(1221544..1223016) Leptothrix cholodnii SP-6 6163814 YP_001790176.1 CDS Lcho_1142 NC_010524.1 1223140 1224360 R PFAM: protein of unknown function DUF989; KEGG: pna:Pnap_0357 protein of unknown function DUF989; hypothetical protein complement(1223140..1224360) Leptothrix cholodnii SP-6 6163815 YP_001790177.1 CDS Lcho_1143 NC_010524.1 1224614 1225531 R PFAM: Auxin Efflux Carrier; KEGG: mpt:Mpe_A2024 hypothetical protein; auxin efflux carrier complement(1224614..1225531) Leptothrix cholodnii SP-6 6163816 YP_001790178.1 CDS Lcho_1144 NC_010524.1 1225598 1226404 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: gvi:gll1951 phosphopantetheinyltransferase family protein; 4'-phosphopantetheinyl transferase complement(1225598..1226404) Leptothrix cholodnii SP-6 6163817 YP_001790179.1 CDS Lcho_1145 NC_010524.1 1226576 1227553 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A2023 hypothetical protein; hypothetical protein 1226576..1227553 Leptothrix cholodnii SP-6 6163818 YP_001790180.1 CDS Lcho_1146 NC_010524.1 1227628 1228488 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pol:Bpro_3191 tyrosine recombinase XerD; tyrosine recombinase XerD 1227628..1228488 Leptothrix cholodnii SP-6 6163819 YP_001790181.1 CDS Lcho_1147 NC_010524.1 1228492 1229244 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A0132 amino acid ABC transporter; polar amino acid ABC transporter inner membrane subunit complement(1228492..1229244) Leptothrix cholodnii SP-6 6163820 YP_001790182.1 CDS Lcho_1148 NC_010524.1 1229311 1230162 R PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pna:Pnap_3442 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1229311..1230162) Leptothrix cholodnii SP-6 6164027 YP_001790183.1 CDS Lcho_1149 NC_010524.1 1230285 1231307 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: aav:Aave_3092 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase complement(1230285..1231307) Leptothrix cholodnii SP-6 6164028 YP_001790184.1 CDS Lcho_1150 NC_010524.1 1231596 1232387 D KEGG: spu:758554 hypothetical protein LOC758554; hypothetical protein 1231596..1232387 Leptothrix cholodnii SP-6 6164029 YP_001790185.1 CDS Lcho_1151 NC_010524.1 1232470 1233180 R hypothetical protein complement(1232470..1233180) Leptothrix cholodnii SP-6 6164030 YP_001790186.1 CDS Lcho_1152 NC_010524.1 1233388 1234299 D KEGG: spu:758554 hypothetical protein LOC758554; hypothetical protein 1233388..1234299 Leptothrix cholodnii SP-6 6164031 YP_001790187.1 CDS Lcho_1153 NC_010524.1 1237064 1237354 R TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: rfr:Rfer_3908 protein of unknown function DUF196; CRISPR-associated Cas2 family protein complement(1237064..1237354) Leptothrix cholodnii SP-6 6164032 YP_001790188.1 CDS Lcho_1154 NC_010524.1 1237367 1238398 R TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: eba:ebA3283 hypothetical protein; CRISPR-associated Cas1 family protein complement(1237367..1238398) Leptothrix cholodnii SP-6 6163077 YP_001790189.1 CDS Lcho_1155 NC_010524.1 1238398 1239036 R TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: eba:ebA3284 predicted RecB family exonuclease protein; CRISPR-associated Cas4 family protein complement(1238398..1239036) Leptothrix cholodnii SP-6 6163078 YP_001790190.1 CDS Lcho_1156 NC_010524.1 1239096 1239341 D TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; addiction module antitoxin 1239096..1239341 Leptothrix cholodnii SP-6 6163079 YP_001790191.1 CDS Lcho_1157 NC_010524.1 1239350 1239643 D PFAM: plasmid stabilization system; KEGG: noc:Noc_2071 plasmid stabilization system protein; plasmid stabilization system protein 1239350..1239643 Leptothrix cholodnii SP-6 6163080 YP_001790192.1 CDS Lcho_1158 NC_010524.1 1239661 1240569 R TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: mca:MCA0654 CRISPR-associated TM1801 family protein; CRISPR-associated Csd2 family protein complement(1239661..1240569) Leptothrix cholodnii SP-6 6163081 YP_001790193.1 CDS Lcho_1159 NC_010524.1 1240596 1242383 R TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: gme:Gmet_1066 CRISPR-associated CT1133 family protein; CRISPR-associated RAMP Csd1 family protein complement(1240596..1242383) Leptothrix cholodnii SP-6 6163082 YP_001790194.1 CDS Lcho_1160 NC_010524.1 1242380 1243036 R TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mca:MCA0656 CRISPR-associated CT1134 family protein; CRISPR-associated Cas5 family protein complement(1242380..1243036) Leptothrix cholodnii SP-6 6164033 YP_001790195.1 CDS Lcho_1161 NC_010524.1 1243065 1245449 R PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mca:MCA0657 CRISPR-associated helicase Cas3; DEAD/DEAH box helicase complement(1243065..1245449) Leptothrix cholodnii SP-6 6164034 YP_001790196.1 CDS Lcho_1162 NC_010524.1 1245749 1246462 D KEGG: mpt:Mpe_A3300 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1245749..1246462 Leptothrix cholodnii SP-6 6164035 YP_001790197.1 CDS Lcho_1163 NC_010524.1 1246482 1247501 R PFAM: Hsp33 protein; KEGG: pna:Pnap_1179 HSP33 protein; Hsp33 protein complement(1246482..1247501) Leptothrix cholodnii SP-6 6164036 YP_001790198.1 CDS Lcho_1164 NC_010524.1 1247505 1248029 R KEGG: pol:Bpro_3188 transferase hexapeptide repeat; hexapaptide repeat-containing transferase complement(1247505..1248029) Leptothrix cholodnii SP-6 6164037 YP_001790199.1 CDS Lcho_1165 NC_010524.1 1248093 1248926 D PFAM: protein of unknown function DUF455; KEGG: aav:Aave_1317 protein of unknown function DUF455; hypothetical protein 1248093..1248926 Leptothrix cholodnii SP-6 6164038 YP_001790200.1 CDS Lcho_1166 NC_010524.1 1248933 1249817 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pna:Pnap_1267 ion transport protein; Ion transport protein 1248933..1249817 Leptothrix cholodnii SP-6 6162673 YP_001790201.1 CDS Lcho_1167 NC_010524.1 1249839 1250441 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: mpt:Mpe_A2020 hypothetical protein; multiple antibiotic resistance (MarC)-like protein complement(1249839..1250441) Leptothrix cholodnii SP-6 6162674 YP_001790202.1 CDS Lcho_1168 NC_010524.1 1250475 1250936 R KEGG: aav:Aave_1320 hypothetical protein; hypothetical protein complement(1250475..1250936) Leptothrix cholodnii SP-6 6162675 YP_001790203.1 CDS Lcho_1169 NC_010524.1 1251019 1252050 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fre:Franean1_6766 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1251019..1252050 Leptothrix cholodnii SP-6 6162676 YP_001790204.1 CDS Lcho_1170 NC_010524.1 1252174 1253763 D PFAM: FAD linked oxidase domain protein; biotin/lipoate A/B protein ligase; KEGG: mpt:Mpe_A3638 putative glycolate oxidase (FAD-linked subunit) oxidoreductase protein; FAD linked oxidase domain-containing protein 1252174..1253763 Leptothrix cholodnii SP-6 6162677 YP_001790205.1 CDS Lcho_1171 NC_010524.1 1253770 1254897 D PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3639 FAD linked oxidase; FAD linked oxidase domain-containing protein 1253770..1254897 Leptothrix cholodnii SP-6 6162678 YP_001790206.1 CDS glcF NC_010524.1 1254913 1256169 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mpt:Mpe_A3640 glycolate oxidase iron-sulfur subunit; glycolate oxidase iron-sulfur subunit 1254913..1256169 Leptothrix cholodnii SP-6 6163058 YP_001790207.1 CDS Lcho_1173 NC_010524.1 1256240 1256524 R PFAM: Septum formation initiator; KEGG: mpt:Mpe_A2848 hypothetical protein; septum formation initiator complement(1256240..1256524) Leptothrix cholodnii SP-6 6163059 YP_001790208.1 CDS Lcho_1174 NC_010524.1 1256531 1257814 R PFAM: enolase; KEGG: ajs:Ajs_0997 phosphopyruvate hydratase; phosphopyruvate hydratase complement(1256531..1257814) Leptothrix cholodnii SP-6 6163060 YP_001790209.1 CDS Lcho_1175 NC_010524.1 1257928 1258785 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1257928..1258785) Leptothrix cholodnii SP-6 6163061 YP_001790210.1 CDS pyrG NC_010524.1 1258782 1260473 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1258782..1260473) Leptothrix cholodnii SP-6 6163062 YP_001790211.1 CDS Lcho_1177 NC_010524.1 1260651 1261511 R KEGG: dac:Daci_1821 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase complement(1260651..1261511) Leptothrix cholodnii SP-6 6163063 YP_001790212.1 CDS panB NC_010524.1 1261525 1262394 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1261525..1262394) Leptothrix cholodnii SP-6 6161721 YP_001790213.1 CDS Lcho_1179 NC_010524.1 1262800 1264035 D KEGG: sal:Sala_1918 hypothetical protein; cellulose biosynthesis protein CelD 1262800..1264035 Leptothrix cholodnii SP-6 6161722 YP_001790214.1 CDS Lcho_1180 NC_010524.1 1264067 1264894 R KEGG: mpt:Mpe_A2843 hypothetical protein; hypothetical protein complement(1264067..1264894) Leptothrix cholodnii SP-6 6161723 YP_001790215.1 CDS Lcho_1181 NC_010524.1 1264891 1267551 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1264891..1267551) Leptothrix cholodnii SP-6 6161724 YP_001790216.1 CDS Lcho_1182 NC_010524.1 1267942 1268160 D hypothetical protein 1267942..1268160 Leptothrix cholodnii SP-6 6161725 YP_001790217.1 CDS Lcho_1183 NC_010524.1 1268261 1269562 D KEGG: pol:Bpro_1182 membrane protein-like; membrane protein 1268261..1269562 Leptothrix cholodnii SP-6 6161726 YP_001790218.1 CDS Lcho_1184 NC_010524.1 1269588 1270094 R PFAM: regulatory protein MarR; KEGG: pna:Pnap_2122 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1269588..1270094) Leptothrix cholodnii SP-6 6163485 YP_001790219.1 CDS Lcho_1185 NC_010524.1 1270266 1271033 D TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2123 short-chain dehydrogenase/reductase SDR; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 1270266..1271033 Leptothrix cholodnii SP-6 6163486 YP_001790220.1 CDS Lcho_1186 NC_010524.1 1271078 1271866 D TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2124 naphthoate synthase; 2-ketocyclohexanecarboxyl-CoA hydrolase 1271078..1271866 Leptothrix cholodnii SP-6 6163487 YP_001790221.1 CDS Lcho_1187 NC_010524.1 1271886 1273055 D TIGRFAM: cyclohexanecarboxyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pna:Pnap_2125 acyl-CoA dehydrogenase domain protein; cyclohexanecarboxyl-CoA dehydrogenase 1271886..1273055 Leptothrix cholodnii SP-6 6163488 YP_001790222.1 CDS Lcho_1188 NC_010524.1 1273092 1274735 D AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase 1273092..1274735 Leptothrix cholodnii SP-6 6163489 YP_001790223.1 CDS Lcho_1189 NC_010524.1 1274769 1275761 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_2127 uncharacterized protein UPF0065; hypothetical protein 1274769..1275761 Leptothrix cholodnii SP-6 6163490 YP_001790224.1 CDS Lcho_1190 NC_010524.1 1275801 1276577 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2128 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1275801..1276577 Leptothrix cholodnii SP-6 6162970 YP_001790225.1 CDS Lcho_1191 NC_010524.1 1276622 1277782 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pna:Pnap_2129 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1276622..1277782 Leptothrix cholodnii SP-6 6162971 YP_001790226.1 CDS Lcho_1192 NC_010524.1 1277799 1279484 D PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: mpt:Mpe_A1443 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 1277799..1279484 Leptothrix cholodnii SP-6 6162972 YP_001790227.1 CDS Lcho_1193 NC_010524.1 1279553 1280737 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pna:Pnap_2130 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1279553..1280737 Leptothrix cholodnii SP-6 6162973 YP_001790228.1 CDS Lcho_1194 NC_010524.1 1280751 1281500 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dac:Daci_2390 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit 1280751..1281500 Leptothrix cholodnii SP-6 6162974 YP_001790229.1 CDS Lcho_1195 NC_010524.1 1281503 1282429 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: mpt:Mpe_A1297 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha 1281503..1282429 Leptothrix cholodnii SP-6 6162975 YP_001790230.1 CDS Lcho_1196 NC_010524.1 1282432 1283217 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2941 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1282432..1283217 Leptothrix cholodnii SP-6 6160963 YP_001790231.1 CDS Lcho_1197 NC_010524.1 1283214 1284728 D PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pna:Pnap_2940 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase 1283214..1284728 Leptothrix cholodnii SP-6 6160964 YP_001790232.1 CDS Lcho_1198 NC_010524.1 1284725 1285930 D KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 1284725..1285930 Leptothrix cholodnii SP-6 6160965 YP_001790233.1 CDS Lcho_1199 NC_010524.1 1285956 1286888 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pna:Pnap_2708 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1285956..1286888) Leptothrix cholodnii SP-6 6160966 YP_001790234.1 CDS Lcho_1200 NC_010524.1 1287028 1287891 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2709 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1287028..1287891 Leptothrix cholodnii SP-6 6160967 YP_001790235.1 CDS Lcho_1201 NC_010524.1 1287888 1289591 D proposed role in polysaccahride synthesis; putative succinate dehydrogenase 1287888..1289591 Leptothrix cholodnii SP-6 6160968 YP_001790236.1 CDS Lcho_1202 NC_010524.1 1289588 1289950 D PFAM: NIPSNAP family containing protein; KEGG: pna:Pnap_2711 NIPSNAP family containing protein; NIPSNAP family protein 1289588..1289950 Leptothrix cholodnii SP-6 6161152 YP_001790237.1 CDS Lcho_1203 NC_010524.1 1289947 1290744 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2712 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1289947..1290744 Leptothrix cholodnii SP-6 6161153 YP_001790238.1 CDS Lcho_1204 NC_010524.1 1290784 1291632 D PFAM: inner-membrane translocator; KEGG: pna:Pnap_2713 inner-membrane translocator; inner-membrane translocator 1290784..1291632 Leptothrix cholodnii SP-6 6161154 YP_001790239.1 CDS Lcho_1205 NC_010524.1 1291654 1292655 D PFAM: inner-membrane translocator; KEGG: pna:Pnap_2714 inner-membrane translocator; inner-membrane translocator 1291654..1292655 Leptothrix cholodnii SP-6 6161155 YP_001790240.1 CDS Lcho_1206 NC_010524.1 1292672 1293391 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2715 ABC transporter related; ABC transporter-like protein 1292672..1293391 Leptothrix cholodnii SP-6 6161156 YP_001790241.1 CDS Lcho_1207 NC_010524.1 1293388 1294086 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2716 ABC transporter related; ABC transporter-like protein 1293388..1294086 Leptothrix cholodnii SP-6 6161157 YP_001790242.1 CDS Lcho_1208 NC_010524.1 1294122 1295312 D PFAM: Extracellular ligand-binding receptor; KEGG: pna:Pnap_2717 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1294122..1295312 Leptothrix cholodnii SP-6 6160804 YP_001790243.1 CDS Lcho_1209 NC_010524.1 1295384 1295971 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mpt:Mpe_A1354 predicted rhodopsin-like G-protein coupled receptor superfamily; hemerythrin HHE cation-binding domain-containing protein 1295384..1295971 Leptothrix cholodnii SP-6 6160805 YP_001790244.1 CDS Lcho_1210 NC_010524.1 1296094 1296354 D KEGG: pna:Pnap_3659 hypothetical protein; hypothetical protein 1296094..1296354 Leptothrix cholodnii SP-6 6160806 YP_001790245.1 CDS Lcho_1211 NC_010524.1 1296419 1296955 D PFAM: cytochrome B561; KEGG: pna:Pnap_3658 cytochrome b561; cytochrome B561 1296419..1296955 Leptothrix cholodnii SP-6 6160807 YP_001790246.1 CDS Lcho_1212 NC_010524.1 1296968 1298539 R PFAM: coenzyme A transferase; KEGG: pna:Pnap_2700 coenzyme A transferase; coenzyme A transferase complement(1296968..1298539) Leptothrix cholodnii SP-6 6160808 YP_001790247.1 CDS Lcho_1213 NC_010524.1 1298536 1299696 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pna:Pnap_2701 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(1298536..1299696) Leptothrix cholodnii SP-6 6160809 YP_001790248.1 CDS Lcho_1214 NC_010524.1 1299705 1300847 R PFAM: Extracellular ligand-binding receptor; KEGG: pna:Pnap_1650 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1299705..1300847) Leptothrix cholodnii SP-6 6163847 YP_001790249.1 CDS Lcho_1215 NC_010524.1 1300941 1302047 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:blr3664 putative oxidoreductase; oxidoreductase domain-containing protein 1300941..1302047 Leptothrix cholodnii SP-6 6163848 YP_001790250.1 CDS Lcho_1216 NC_010524.1 1302113 1302925 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: xau:Xaut_2699 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 1302113..1302925 Leptothrix cholodnii SP-6 6163849 YP_001790251.1 CDS Lcho_1217 NC_010524.1 1302922 1303725 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2720 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1302922..1303725 Leptothrix cholodnii SP-6 6163850 YP_001790252.1 CDS Lcho_1218 NC_010524.1 1303757 1305052 R PFAM: inositol monophosphatase; KEGG: mpt:Mpe_A2841 inositol-1(or 4)-monophosphatase; inositol-phosphate phosphatase complement(1303757..1305052) Leptothrix cholodnii SP-6 6163851 YP_001790253.1 CDS Lcho_1219 NC_010524.1 1305199 1305957 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mpt:Mpe_A2840 putative tRNA/rRNA methyltransferase protein; RNA methyltransferase 1305199..1305957 Leptothrix cholodnii SP-6 6163852 YP_001790254.1 CDS Lcho_1220 NC_010524.1 1306065 1306844 D TIGRFAM: serine O-acetyltransferase; KEGG: mpt:Mpe_A2839 serine O-acetyltransferase; serine O-acetyltransferase 1306065..1306844 Leptothrix cholodnii SP-6 6160792 YP_001790255.1 CDS Lcho_1221 NC_010524.1 1306837 1307457 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: mpt:Mpe_A2838 molybdopterin biosynthesis Mog protein; molybdenum cofactor synthesis domain-containing protein complement(1306837..1307457) Leptothrix cholodnii SP-6 6160793 YP_001790256.1 CDS Lcho_1222 NC_010524.1 1307450 1308103 R PFAM: protein of unknown function DUF615; KEGG: mpt:Mpe_A2837 hypothetical protein; hypothetical protein complement(1307450..1308103) Leptothrix cholodnii SP-6 6160794 YP_001790257.1 CDS Lcho_1223 NC_010524.1 1308308 1309732 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: mpt:Mpe_A2836 PmbA protein; peptidase U62 modulator of DNA gyrase 1308308..1309732 Leptothrix cholodnii SP-6 6160795 YP_001790258.1 CDS Lcho_1224 NC_010524.1 1309852 1310934 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1749 twin-arginine translocation pathway signal; TRAP C4-dicarboxylate transport system permease subunit DctP 1309852..1310934 Leptothrix cholodnii SP-6 6160796 YP_001790259.1 CDS Lcho_1225 NC_010524.1 1311046 1311966 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: vei:Veis_2234 protein of unknown function DUF6, transmembrane; hypothetical protein 1311046..1311966 Leptothrix cholodnii SP-6 6160797 YP_001790260.1 CDS Lcho_1226 NC_010524.1 1311999 1312790 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpt:Mpe_A3053 oxidoreductase; short-chain dehydrogenase/reductase SDR 1311999..1312790 Leptothrix cholodnii SP-6 6163926 YP_001790261.1 CDS Lcho_1227 NC_010524.1 1312818 1313771 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A3051 permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein complement(1312818..1313771) Leptothrix cholodnii SP-6 6163927 YP_001790262.1 CDS Lcho_1228 NC_010524.1 1313935 1314918 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mpt:Mpe_A3049 quinone oxidoreductase, putative; alcohol dehydrogenase 1313935..1314918 Leptothrix cholodnii SP-6 6163928 YP_001790263.1 CDS Lcho_1229 NC_010524.1 1315029 1317017 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RS01896 probable TonB-dependent receptor signal peptide protein; TonB-dependent receptor plug 1315029..1317017 Leptothrix cholodnii SP-6 6163929 YP_001790264.1 CDS Lcho_1230 NC_010524.1 1317039 1317596 D KEGG: rso:RS01895 putative transmembrane protein; putative transmembrane protein 1317039..1317596 Leptothrix cholodnii SP-6 6163930 YP_001790265.1 CDS Lcho_1231 NC_010524.1 1317593 1319593 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS01894 hypothetical protein; diguanylate cyclase/phosphodiesterase 1317593..1319593 Leptothrix cholodnii SP-6 6163931 YP_001790266.1 CDS Lcho_1232 NC_010524.1 1319609 1319914 R KEGG: mpt:Mpe_A3050 hypothetical protein; hypothetical protein complement(1319609..1319914) Leptothrix cholodnii SP-6 6163956 YP_001790267.1 CDS Lcho_1233 NC_010524.1 1319925 1320794 R KEGG: mpt:Mpe_A3048 integral membrane protein; integral membrane protein complement(1319925..1320794) Leptothrix cholodnii SP-6 6163957 YP_001790268.1 CDS Lcho_1234 NC_010524.1 1320882 1321394 R TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: mpt:Mpe_A3047 signal peptidase II; lipoprotein signal peptidase complement(1320882..1321394) Leptothrix cholodnii SP-6 6163958 YP_001790269.1 CDS Lcho_1235 NC_010524.1 1321445 1322332 R PFAM: aldo/keto reductase; KEGG: dsh:Dshi_2756 aldo/keto reductase; aldo/keto reductase complement(1321445..1322332) Leptothrix cholodnii SP-6 6163959 YP_001790270.1 CDS Lcho_1236 NC_010524.1 1322380 1325376 R TIGRFAM: isoleucyl-tRNA synthetase; KEGG: mpt:Mpe_A3046 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(1322380..1325376) Leptothrix cholodnii SP-6 6163960 YP_001790271.1 CDS Lcho_1237 NC_010524.1 1325489 1326526 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(1325489..1326526) Leptothrix cholodnii SP-6 6163961 YP_001790272.1 CDS Lcho_1238 NC_010524.1 1326564 1327196 R KEGG: rfr:Rfer_2550 putative fructose transport system kinase; putative fructose transport system kinase complement(1326564..1327196) Leptothrix cholodnii SP-6 6160742 YP_001790273.1 CDS Lcho_1239 NC_010524.1 1327217 1328356 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_3440 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(1327217..1328356) Leptothrix cholodnii SP-6 6160743 YP_001790274.1 CDS Lcho_1240 NC_010524.1 1328370 1329509 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_3393 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(1328370..1329509) Leptothrix cholodnii SP-6 6160744 YP_001790275.1 CDS Lcho_1241 NC_010524.1 1329648 1330343 R KEGG: mpt:Mpe_A3040 predicted peptidase aspartic family; peptidase aspartic family complement(1329648..1330343) Leptothrix cholodnii SP-6 6160745 YP_001790276.1 CDS Lcho_1242 NC_010524.1 1330446 1330952 R PFAM: protein of unknown function DUF520; KEGG: mpt:Mpe_A3039 hypothetical protein; hypothetical protein complement(1330446..1330952) Leptothrix cholodnii SP-6 6160746 YP_001790277.1 CDS Lcho_1243 NC_010524.1 1330961 1331995 D KEGG: mpt:Mpe_A3038 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1330961..1331995 Leptothrix cholodnii SP-6 6160747 YP_001790278.1 CDS Lcho_1244 NC_010524.1 1332021 1333250 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: mpt:Mpe_A3528 putative lipoprotein; rare lipoprotein A complement(1332021..1333250) Leptothrix cholodnii SP-6 6163920 YP_001790279.1 CDS Lcho_1245 NC_010524.1 1333276 1334379 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mpt:Mpe_A3689 GTN reductase; NADH:flavin oxidoreductase complement(1333276..1334379) Leptothrix cholodnii SP-6 6163921 YP_001790280.1 CDS Lcho_1246 NC_010524.1 1334436 1335200 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpt:Mpe_A2071 endonuclease/exonuclease/phosphatase family protein; exodeoxyribonuclease III Xth complement(1334436..1335200) Leptothrix cholodnii SP-6 6163922 YP_001790281.1 CDS Lcho_1247 NC_010524.1 1335267 1335629 R KEGG: pna:Pnap_1322 hypothetical protein; hypothetical protein complement(1335267..1335629) Leptothrix cholodnii SP-6 6163923 YP_001790282.1 CDS Lcho_1248 NC_010524.1 1335681 1337162 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: syd:Syncc9605_0708 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase complement(1335681..1337162) Leptothrix cholodnii SP-6 6163924 YP_001790283.1 CDS Lcho_1249 NC_010524.1 1337194 1338456 R KEGG: syr:SynRCC307_2288 DNA photolyase FAD binding domain; deoxyribodipyrimidine photolyase-like protein complement(1337194..1338456) Leptothrix cholodnii SP-6 6163925 YP_001790284.1 CDS Lcho_1250 NC_010524.1 1338459 1340000 R PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: mpt:Mpe_A2055 putative alpha-deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein complement(1338459..1340000) Leptothrix cholodnii SP-6 6161094 YP_001790285.1 CDS Lcho_1251 NC_010524.1 1339993 1340160 R KEGG: mpt:Mpe_A2054 hypothetical protein; hypothetical protein complement(1339993..1340160) Leptothrix cholodnii SP-6 6161095 YP_001790286.1 CDS Lcho_1252 NC_010524.1 1340296 1340934 R PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pnu:Pnuc_0780 methyltransferase type 11; type 11 methyltransferase complement(1340296..1340934) Leptothrix cholodnii SP-6 6161096 YP_001790287.1 CDS Lcho_1253 NC_010524.1 1341067 1341528 D PFAM: Rhodanese domain protein; KEGG: mpt:Mpe_A3482 rhodanese-related sulfurtransferase-like protein; rhodanese domain-containing protein 1341067..1341528 Leptothrix cholodnii SP-6 6161097 YP_001790288.1 CDS Lcho_1254 NC_010524.1 1341543 1342286 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: aeh:Mlg_0631 cyclic nucleotide-binding protein; Crp/FNR family transcriptional regulator 1341543..1342286 Leptothrix cholodnii SP-6 6161098 YP_001790289.1 CDS Lcho_1255 NC_010524.1 1342359 1342862 D KEGG: hch:HCH_00812 deoxyinosine 3'endonuclease (endonuclease V); deoxyinosine 3'endonuclease 1342359..1342862 Leptothrix cholodnii SP-6 6161099 YP_001790290.1 CDS Lcho_1256 NC_010524.1 1342900 1343466 R PFAM: protein of unknown function DUF98; hypothetical protein complement(1342900..1343466) Leptothrix cholodnii SP-6 6162913 YP_001790291.1 CDS Lcho_1257 NC_010524.1 1343600 1344607 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pna:Pnap_2839 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 1343600..1344607 Leptothrix cholodnii SP-6 6162914 YP_001790292.1 CDS Lcho_1258 NC_010524.1 1344905 1345873 D KEGG: rfr:Rfer_0528 porin, gram-negative type; porin 1344905..1345873 Leptothrix cholodnii SP-6 6162915 YP_001790293.1 CDS Lcho_1259 NC_010524.1 1345906 1346406 R PFAM: dihydrofolate reductase region; KEGG: mpt:Mpe_A2052 dihydrofolate reductase; dihydrofolate reductase complement(1345906..1346406) Leptothrix cholodnii SP-6 6162916 YP_001790294.1 CDS Lcho_1260 NC_010524.1 1346403 1347251 R PFAM: thymidylate synthase; KEGG: ajs:Ajs_1197 thymidylate synthase; thymidylate synthase complement(1346403..1347251) Leptothrix cholodnii SP-6 6162917 YP_001790295.1 CDS Lcho_1261 NC_010524.1 1347335 1347703 R PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1347335..1347703) Leptothrix cholodnii SP-6 6162918 YP_001790296.1 CDS Lcho_1262 NC_010524.1 1347700 1349505 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related; ABC transporter-like protein complement(1347700..1349505) Leptothrix cholodnii SP-6 6162879 YP_001790297.1 CDS Lcho_1263 NC_010524.1 1349610 1350077 D KEGG: mpt:Mpe_A1631 hypothetical protein; hypothetical protein 1349610..1350077 Leptothrix cholodnii SP-6 6162880 YP_001790298.1 CDS Lcho_1264 NC_010524.1 1350197 1350598 D KEGG: mpt:Mpe_A1632 multi-Cu oxidase; multi-Cu oxidase 1350197..1350598 Leptothrix cholodnii SP-6 6162881 YP_001790299.1 CDS Lcho_1265 NC_010524.1 1350588 1352033 D PFAM: outer membrane efflux protein; KEGG: mpt:Mpe_A1633 putative copper resistance-related lipoprotein; outer membrane efflux protein 1350588..1352033 Leptothrix cholodnii SP-6 6162882 YP_001790300.1 CDS Lcho_1266 NC_010524.1 1352052 1353464 D PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase type 3 1352052..1353464 Leptothrix cholodnii SP-6 6162883 YP_001790301.1 CDS Lcho_1267 NC_010524.1 1353493 1354008 D PFAM: blue (type 1) copper domain protein; KEGG: eba:ebA1878 predicted multicopper oxidase; blue (type1) copper domain-containing protein 1353493..1354008 Leptothrix cholodnii SP-6 6162884 YP_001790302.1 CDS Lcho_1268 NC_010524.1 1354005 1354514 D PFAM: protein of unknown function DUF411; KEGG: mpt:Mpe_A0494 hypothetical protein; hypothetical protein 1354005..1354514 Leptothrix cholodnii SP-6 6162627 YP_001790303.1 CDS Lcho_1269 NC_010524.1 1354531 1355280 R KEGG: pst:PSPTO_5177 hypothetical protein; hypothetical protein complement(1354531..1355280) Leptothrix cholodnii SP-6 6162628 YP_001790304.1 CDS Lcho_1270 NC_010524.1 1355277 1355843 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_0362 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor complement(1355277..1355843) Leptothrix cholodnii SP-6 6162629 YP_001790305.1 CDS Lcho_1271 NC_010524.1 1355895 1356479 R KEGG: dac:Daci_3806 hypothetical protein; hypothetical protein complement(1355895..1356479) Leptothrix cholodnii SP-6 6162630 YP_001790306.1 CDS Lcho_1272 NC_010524.1 1356601 1358247 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A1639 ABC peptide transporter, ATPase subunit; ABC transporter-like protein complement(1356601..1358247) Leptothrix cholodnii SP-6 6162631 YP_001790307.1 CDS Lcho_1273 NC_010524.1 1358244 1359359 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_2144 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1358244..1359359) Leptothrix cholodnii SP-6 6162632 YP_001790308.1 CDS Lcho_1274 NC_010524.1 1359356 1360393 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_2974 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1359356..1360393) Leptothrix cholodnii SP-6 6162526 YP_001790309.1 CDS Lcho_1275 NC_010524.1 1360418 1360840 R PFAM: protein of unknown function DUF86; KEGG: pna:Pnap_0134 protein of unknown function DUF86; hypothetical protein complement(1360418..1360840) Leptothrix cholodnii SP-6 6162527 YP_001790310.1 CDS Lcho_1276 NC_010524.1 1360833 1361222 R PFAM: DNA polymerase beta domain protein region; KEGG: ppd:Ppro_2946 DNA polymerase, beta domain protein region; DNA polymerase subunit beta complement(1360833..1361222) Leptothrix cholodnii SP-6 6162528 YP_001790311.1 CDS Lcho_1277 NC_010524.1 1361219 1363144 R PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_2094 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1361219..1363144) Leptothrix cholodnii SP-6 6162529 YP_001790312.1 CDS Lcho_1278 NC_010524.1 1363268 1363957 R KEGG: ypi:YpsIP31758_0091 hypothetical protein; hypothetical protein complement(1363268..1363957) Leptothrix cholodnii SP-6 6162530 YP_001790313.1 CDS Lcho_1279 NC_010524.1 1364049 1365278 R KEGG: mpt:Mpe_A2048 hypothetical protein; hypothetical protein complement(1364049..1365278) Leptothrix cholodnii SP-6 6162531 YP_001790314.1 CDS Lcho_1280 NC_010524.1 1365337 1365645 R hypothetical protein complement(1365337..1365645) Leptothrix cholodnii SP-6 6162171 YP_001790315.1 CDS Lcho_1281 NC_010524.1 1365779 1366093 D KEGG: mpt:Mpe_A0864 hypothetical protein; hypothetical protein 1365779..1366093 Leptothrix cholodnii SP-6 6162172 YP_001790316.1 CDS Lcho_1282 NC_010524.1 1366098 1368659 R PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein; hypothetical protein complement(1366098..1368659) Leptothrix cholodnii SP-6 6162173 YP_001790317.1 CDS Lcho_1283 NC_010524.1 1368677 1369438 R PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0715 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(1368677..1369438) Leptothrix cholodnii SP-6 6162174 YP_001790318.1 CDS Lcho_1284 NC_010524.1 1369548 1370243 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2035 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1369548..1370243) Leptothrix cholodnii SP-6 6162175 YP_001790319.1 CDS Lcho_1285 NC_010524.1 1370240 1371226 R KEGG: ajs:Ajs_3111 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1370240..1371226) Leptothrix cholodnii SP-6 6162176 YP_001790320.1 CDS Lcho_1286 NC_010524.1 1371219 1372466 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3211 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(1371219..1372466) Leptothrix cholodnii SP-6 6160385 YP_001790321.1 CDS Lcho_1287 NC_010524.1 1372610 1373035 D KEGG: eba:ebB34 hypothetical protein; hypothetical protein 1372610..1373035 Leptothrix cholodnii SP-6 6160386 YP_001790322.1 CDS Lcho_1288 NC_010524.1 1373039 1374031 D KEGG: eba:ebA1117 hypothetical protein; hypothetical protein 1373039..1374031 Leptothrix cholodnii SP-6 6160387 YP_001790323.1 CDS Lcho_1289 NC_010524.1 1374066 1374497 R PFAM: Domain of unknown function DUF1841; KEGG: pol:Bpro_1226 hypothetical protein; hypothetical protein complement(1374066..1374497) Leptothrix cholodnii SP-6 6160388 YP_001790324.1 CDS Lcho_1290 NC_010524.1 1374576 1375169 D PFAM: nitroreductase; KEGG: xac:XAC0554 hypothetical protein; hypothetical protein 1374576..1375169 Leptothrix cholodnii SP-6 6160389 YP_001790325.1 CDS Lcho_1291 NC_010524.1 1375169 1375927 D PFAM: protein of unknown function DUF81; KEGG: mpt:Mpe_A1099 putative integral membrane protein; hypothetical protein 1375169..1375927 Leptothrix cholodnii SP-6 6160390 YP_001790326.1 CDS Lcho_1292 NC_010524.1 1375961 1376752 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bpt:Bpet3275 conserved hypothetical protein, putative enoyl-CoA hydratase family member; enoyl-CoA hydratase/isomerase 1375961..1376752 Leptothrix cholodnii SP-6 6160904 YP_001790327.1 CDS Lcho_1293 NC_010524.1 1376821 1378353 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 1376821..1378353 Leptothrix cholodnii SP-6 6160905 YP_001790328.1 CDS Lcho_1294 NC_010524.1 1378496 1380223 D KEGG: bpt:Bpet0639 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 1378496..1380223 Leptothrix cholodnii SP-6 6160906 YP_001790329.1 CDS Lcho_1295 NC_010524.1 1380245 1381951 D KEGG: sse:Ssed_3337 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1380245..1381951 Leptothrix cholodnii SP-6 6160907 YP_001790330.1 CDS Lcho_1296 NC_010524.1 1381964 1383781 R transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC complement(1381964..1383781) Leptothrix cholodnii SP-6 6160908 YP_001790331.1 CDS Lcho_1297 NC_010524.1 1383778 1384422 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_1238 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(1383778..1384422) Leptothrix cholodnii SP-6 6160909 YP_001790332.1 CDS Lcho_1298 NC_010524.1 1384566 1385240 D KEGG: mpt:Mpe_A1153 putative partition-related protein; putative partition-like protein 1384566..1385240 Leptothrix cholodnii SP-6 6163950 YP_001790333.1 CDS Lcho_1299 NC_010524.1 1385335 1386156 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mpt:Mpe_A1151 two-component response regulator; two component LuxR family transcriptional regulator 1385335..1386156 Leptothrix cholodnii SP-6 6163951 YP_001790334.1 CDS Lcho_1300 NC_010524.1 1386153 1387559 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1150 signal transduction histidine kinase-like protein; histidine kinase 1386153..1387559 Leptothrix cholodnii SP-6 6163952 YP_001790335.1 CDS Lcho_1301 NC_010524.1 1387683 1388573 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1387683..1388573 Leptothrix cholodnii SP-6 6163953 YP_001790336.1 CDS Lcho_1302 NC_010524.1 1388595 1388801 D KEGG: ajs:Ajs_0183 hypothetical protein; hypothetical protein 1388595..1388801 Leptothrix cholodnii SP-6 6163954 YP_001790337.1 CDS Lcho_1303 NC_010524.1 1388924 1389811 D TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: mpt:Mpe_A3546 putative formyltetrahydrofolate deformylase protein; formyltetrahydrofolate deformylase 1388924..1389811 Leptothrix cholodnii SP-6 6163955 YP_001790338.1 CDS Lcho_1304 NC_010524.1 1389852 1390268 D KEGG: mpt:Mpe_A3545 hypothetical protein; hypothetical protein 1389852..1390268 Leptothrix cholodnii SP-6 6161003 YP_001790339.1 CDS Lcho_1305 NC_010524.1 1390268 1391407 D KEGG: mpt:Mpe_A3544 hypothetical protein; hypothetical protein 1390268..1391407 Leptothrix cholodnii SP-6 6161004 YP_001790340.1 CDS Lcho_1306 NC_010524.1 1391400 1391960 D KEGG: mpt:Mpe_A3543 hypothetical protein; hypothetical protein 1391400..1391960 Leptothrix cholodnii SP-6 6161005 YP_001790341.1 CDS Lcho_1307 NC_010524.1 1392051 1392575 R PFAM: cytochrome c class I; KEGG: mpt:Mpe_A3542 putative cytochrome; cytochrome c class I complement(1392051..1392575) Leptothrix cholodnii SP-6 6161006 YP_001790342.1 CDS Lcho_1308 NC_010524.1 1393306 1393950 D PFAM: Fibronectin type III domain protein; fibronectin type III domain-containing protein 1393306..1393950 Leptothrix cholodnii SP-6 6161008 YP_001790343.1 CDS Lcho_1309 NC_010524.1 1394095 1396569 D PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: ajs:Ajs_2618 EcoEI R, C-terminal domain protein; EcoEI R domain-containing protein 1394095..1396569 Leptothrix cholodnii SP-6 6163680 YP_001790344.1 CDS Lcho_1310 NC_010524.1 1396599 1398068 D PFAM: N-6 DNA methylase; KEGG: ajs:Ajs_2616 N-6 DNA methylase; N-6 DNA methylase 1396599..1398068 Leptothrix cholodnii SP-6 6163681 YP_001790345.1 CDS Lcho_1311 NC_010524.1 1398065 1399801 D PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_1015 restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit 1398065..1399801 Leptothrix cholodnii SP-6 6163682 YP_001790346.1 CDS Lcho_1312 NC_010524.1 1399805 1399948 D hypothetical protein 1399805..1399948 Leptothrix cholodnii SP-6 6163683 YP_001790347.1 CDS Lcho_1313 NC_010524.1 1399986 1401200 D KEGG: vvy:VV1909 hypothetical protein; hypothetical protein 1399986..1401200 Leptothrix cholodnii SP-6 6163684 YP_001790348.1 CDS Lcho_1314 NC_010524.1 1401211 1402113 D KEGG: vei:Veis_3011 hypothetical protein; hypothetical protein 1401211..1402113 Leptothrix cholodnii SP-6 6163434 YP_001790349.1 CDS Lcho_1316 NC_010524.1 1403144 1404106 D PFAM: conserved hypothetical protein; KEGG: azo:azo1638 hypothetical protein; hypothetical protein 1403144..1404106 Leptothrix cholodnii SP-6 6163436 YP_001790350.1 CDS Lcho_1317 NC_010524.1 1404117 1405151 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo1636 HTH-type transcriptional regulator; LysR family transcriptional regulator complement(1404117..1405151) Leptothrix cholodnii SP-6 6163437 YP_001790351.1 CDS Lcho_1318 NC_010524.1 1405169 1406260 D PFAM: O-methyltransferase family 2; Methyltransferase type 12; KEGG: mgi:Mflv_3940 O-methyltransferase, family 2; O-methyltransferase family protein 1405169..1406260 Leptothrix cholodnii SP-6 6163438 YP_001790352.1 CDS Lcho_1319 NC_010524.1 1406250 1406738 R KEGG: tbd:Tbd_0094 hypothetical protein; hypothetical protein complement(1406250..1406738) Leptothrix cholodnii SP-6 6163439 YP_001790353.1 CDS Lcho_1320 NC_010524.1 1406803 1407462 D hypothetical protein 1406803..1407462 Leptothrix cholodnii SP-6 6163052 YP_001790354.1 CDS Lcho_1321 NC_010524.1 1407339 1408616 R PFAM: cytochrome c class I; KEGG: mpt:Mpe_A0755 putative alcohol dehydrogenase cytochrome c subunit precursor; gluconate 2-dehydrogenase complement(1407339..1408616) Leptothrix cholodnii SP-6 6163053 YP_001790355.1 CDS Lcho_1322 NC_010524.1 1408613 1409332 R KEGG: pna:Pnap_1283 putative cytochrome c; putative cytochrome c complement(1408613..1409332) Leptothrix cholodnii SP-6 6163054 YP_001790356.1 CDS Lcho_1323 NC_010524.1 1409545 1410903 D PFAM: permease; KEGG: eba:ebA6443 predicted permease; permease 1409545..1410903 Leptothrix cholodnii SP-6 6163055 YP_001790357.1 CDS Lcho_1324 NC_010524.1 1410927 1411163 D TIGRFAM: redox-active disulfide protein 2; KEGG: eba:ebA6442 hypothetical protein; redox-active disulfide protein 2 1410927..1411163 Leptothrix cholodnii SP-6 6163056 YP_001790358.1 CDS Lcho_1325 NC_010524.1 1411230 1411595 D PFAM: LrgA family protein; KEGG: pol:Bpro_0432 LrgA; LrgA family protein 1411230..1411595 Leptothrix cholodnii SP-6 6163057 YP_001790359.1 CDS Lcho_1326 NC_010524.1 1411588 1412304 D PFAM: LrgB family protein; KEGG: pol:Bpro_0431 LrgB-like protein; LrgB family protein 1411588..1412304 Leptothrix cholodnii SP-6 6163020 YP_001790360.1 CDS Lcho_1327 NC_010524.1 1412327 1413292 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; KEGG: bpt:Bpet2096 flagellar-specific RNA polymerase sigma factor; FliA/WhiG family RNA polymerase sigma 28 subunit 1412327..1413292 Leptothrix cholodnii SP-6 6163021 YP_001790361.1 CDS Lcho_1328 NC_010524.1 1413321 1414025 R hypothetical protein complement(1413321..1414025) Leptothrix cholodnii SP-6 6163022 YP_001790362.1 CDS Lcho_1329 NC_010524.1 1414028 1414558 R KEGG: gme:Gmet_1448 hypothetical protein; hypothetical protein complement(1414028..1414558) Leptothrix cholodnii SP-6 6163023 YP_001790363.1 CDS Lcho_1330 NC_010524.1 1414534 1416444 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Ig domain protein group 2 domain protein; Ig domain protein group 1 domain protein; KEGG: ttj:TTHA1868 extracellular serine protease; peptidase S8/S53 subtilisin kexin sedolisin complement(1414534..1416444) Leptothrix cholodnii SP-6 6163024 YP_001790364.1 CDS Lcho_1331 NC_010524.1 1416511 1417836 R PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_2122 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM complement(1416511..1417836) Leptothrix cholodnii SP-6 6163025 YP_001790365.1 CDS Lcho_1332 NC_010524.1 1417833 1418330 R KEGG: psa:PST_1663 hypothetical protein; hypothetical protein complement(1417833..1418330) Leptothrix cholodnii SP-6 6162738 YP_001790366.1 CDS Lcho_1333 NC_010524.1 1418429 1419460 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: azo:azo3677 putative C4-dicarboxylate-binding periplasmic protein; TRAP C4-dicarboxylate transport system permease subunit DctP complement(1418429..1419460) Leptothrix cholodnii SP-6 6162739 YP_001790367.1 CDS Lcho_1334 NC_010524.1 1419568 1420536 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pna:Pnap_2724 ferredoxin; phthalate 4,5-dioxygenase complement(1419568..1420536) Leptothrix cholodnii SP-6 6162740 YP_001790368.1 CDS Lcho_1335 NC_010524.1 1420533 1421588 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bvi:Bcep1808_3498 vanillate monooxygenase; Rieske (2Fe-2S) domain-containing protein complement(1420533..1421588) Leptothrix cholodnii SP-6 6162741 YP_001790369.1 CDS Lcho_1336 NC_010524.1 1421662 1422402 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: csa:Csal_0345 transcriptional regulator, GntR family; GntR family transcriptional regulator 1421662..1422402 Leptothrix cholodnii SP-6 6162742 YP_001790370.1 CDS Lcho_1337 NC_010524.1 1422659 1423009 D PFAM: cytochrome c class I; KEGG: rfr:Rfer_4077 cytochrome c, class I; cytochrome c class I 1422659..1423009 Leptothrix cholodnii SP-6 6162743 YP_001790371.1 CDS Lcho_1338 NC_010524.1 1423044 1423652 D PFAM: NapC/NirT cytochrome c domain protein; KEGG: bpt:Bpet4055 cytochrome c-type protein; NapC/NirT cytochrome c domain-containing protein 1423044..1423652 Leptothrix cholodnii SP-6 6160324 YP_001790372.1 CDS Lcho_1339 NC_010524.1 1423663 1424364 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: azo:azo3938 probable cytochrome c-type protein NapC; NapC/NirT cytochrome c domain-containing protein complement(1423663..1424364) Leptothrix cholodnii SP-6 6160325 YP_001790373.1 CDS Lcho_1340 NC_010524.1 1424386 1424871 R PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: azo:azo3939 probable diheme cytochrome c; nitrate reductase cytochrome c-type subunit NapB complement(1424386..1424871) Leptothrix cholodnii SP-6 6160326 YP_001790374.1 CDS Lcho_1341 NC_010524.1 1424871 1425716 R TIGRFAM: ferredoxin-type protein, NapH/MauN family; KEGG: dsh:Dshi_3163 ferredoxin-type protein, NapH/MauN family; NapH/MauN family ferredoxin-type protein complement(1424871..1425716) Leptothrix cholodnii SP-6 6160327 YP_001790375.1 CDS Lcho_1342 NC_010524.1 1425713 1426432 R TIGRFAM: MauM/NapG family ferredoxin-type protein; KEGG: rsq:Rsph17025_3221 hypothetical protein; MauM/NapG family ferredoxin-type protein complement(1425713..1426432) Leptothrix cholodnii SP-6 6160328 YP_001790376.1 CDS Lcho_1343 NC_010524.1 1426452 1429007 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(1426452..1429007) Leptothrix cholodnii SP-6 6160329 YP_001790377.1 CDS Lcho_1344 NC_010524.1 1429171 1429506 R hypothetical protein complement(1429171..1429506) Leptothrix cholodnii SP-6 6161369 YP_001790378.1 CDS Lcho_1345 NC_010524.1 1429833 1431284 D KEGG: pna:Pnap_2325 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase MoFe cofactor biosynthesis protein NifE 1429833..1431284 Leptothrix cholodnii SP-6 6161370 YP_001790379.1 CDS Lcho_1346 NC_010524.1 1431288 1433984 R KEGG: tbd:Tbd_1456 putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1431288..1433984) Leptothrix cholodnii SP-6 6161371 YP_001790380.1 CDS Lcho_1347 NC_010524.1 1434024 1434485 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dar:Daro_2890 peptidase M52, hydrogen uptake protein; hydrogenase maturation protease complement(1434024..1434485) Leptothrix cholodnii SP-6 6161372 YP_001790381.1 CDS Lcho_1348 NC_010524.1 1434494 1436023 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: dar:Daro_2889 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit complement(1434494..1436023) Leptothrix cholodnii SP-6 6161373 YP_001790382.1 CDS Lcho_1349 NC_010524.1 1436046 1436987 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dar:Daro_2888 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(1436046..1436987) Leptothrix cholodnii SP-6 6161374 YP_001790383.1 CDS Lcho_1350 NC_010524.1 1437293 1438666 D KEGG: pna:Pnap_2324 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 1437293..1438666 Leptothrix cholodnii SP-6 6161325 YP_001790384.1 CDS Lcho_1351 NC_010524.1 1438701 1439132 D TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: bbt:BBta_5920 nitrogenase molybdenum-iron protein NifX; nitrogen fixation protein NifX 1438701..1439132 Leptothrix cholodnii SP-6 6161326 YP_001790385.1 CDS Lcho_1352 NC_010524.1 1439129 1439608 D TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: bxe:Bxe_B1473 hypothetical protein; nitrogen fixation protein 1439129..1439608 Leptothrix cholodnii SP-6 6161327 YP_001790386.1 CDS Lcho_1353 NC_010524.1 1439629 1439829 D PFAM: protein of unknown function DUF683; KEGG: pna:Pnap_2321 protein of unknown function DUF683; hypothetical protein 1439629..1439829 Leptothrix cholodnii SP-6 6161328 YP_001790387.1 CDS Lcho_1354 NC_010524.1 1439849 1440157 D TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bvi:Bcep1808_6025 4Fe-4S ferredoxin, iron-sulfur binding domain protein; ferredoxin III 1439849..1440157 Leptothrix cholodnii SP-6 6161329 YP_001790388.1 CDS Lcho_1355 NC_010524.1 1440169 1440843 D PFAM: NifQ family protein; KEGG: bxe:Bxe_B1476 putative nitrogen fixation-related protein(NifQ); NifQ family protein 1440169..1440843 Leptothrix cholodnii SP-6 6161330 YP_001790389.1 CDS Lcho_1356 NC_010524.1 1440897 1441658 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_2888 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 1440897..1441658 Leptothrix cholodnii SP-6 6159955 YP_001790390.1 CDS Lcho_1357 NC_010524.1 1441662 1442360 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0824 molybdenum transport system permease protein; molybdate ABC transporter inner membrane subunit 1441662..1442360 Leptothrix cholodnii SP-6 6159956 YP_001790391.1 CDS Lcho_1358 NC_010524.1 1442344 1443468 D KEGG: eba:ebA2719 molybdenum import ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 1442344..1443468 Leptothrix cholodnii SP-6 6159957 YP_001790392.1 CDS Lcho_1359 NC_010524.1 1443471 1443713 R KEGG: mpt:Mpe_A2174 hypothetical protein; hypothetical protein complement(1443471..1443713) Leptothrix cholodnii SP-6 6159958 YP_001790393.1 CDS Lcho_1360 NC_010524.1 1444099 1445325 D TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mpt:Mpe_A2262 cysteine desulfurase; cysteine desulfurase IscS 1444099..1445325 Leptothrix cholodnii SP-6 6159959 YP_001790394.1 CDS Lcho_1361 NC_010524.1 1445380 1445808 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: mpt:Mpe_A2261 (Fe-S) cluster formation/repair protein; FeS cluster assembly scaffold IscU 1445380..1445808 Leptothrix cholodnii SP-6 6159960 YP_001790395.1 CDS Lcho_1362 NC_010524.1 1445860 1446279 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: cvi:CV_3694 hypothetical protein; iron-sulfur cluster assembly accessory protein 1445860..1446279 Leptothrix cholodnii SP-6 6159961 YP_001790396.1 CDS Lcho_1363 NC_010524.1 1446293 1446616 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bvi:Bcep1808_5990 iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly accessory protein 1446293..1446616 Leptothrix cholodnii SP-6 6159769 YP_001790397.1 CDS Lcho_1364 NC_010524.1 1446635 1448545 D KEGG: mfa:Mfla_0804 Fe-S protein assembly chaperone HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; Fe-S protein assembly chaperone HscA 1446635..1448545 Leptothrix cholodnii SP-6 6159770 YP_001790398.1 CDS Lcho_1365 NC_010524.1 1448578 1448961 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pna:Pnap_1564 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 1448578..1448961 Leptothrix cholodnii SP-6 6159771 YP_001790399.1 CDS Lcho_1366 NC_010524.1 1449189 1450343 D TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: pna:Pnap_2310 homocitrate synthase; homocitrate synthase 1449189..1450343 Leptothrix cholodnii SP-6 6159772 YP_001790400.1 CDS Lcho_1367 NC_010524.1 1450385 1450750 D PFAM: nitrogen fixation protein NifW; KEGG: pna:Pnap_2312 nitrogen fixation protein NifW; nitrogen fixation protein NifW 1450385..1450750 Leptothrix cholodnii SP-6 6159773 YP_001790401.1 CDS Lcho_1368 NC_010524.1 1450797 1451648 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bxe:Bxe_B1436 electron transfer flavoprotein, fix A (beta subunit); electron transfer flavoprotein alpha/beta-subunit 1450797..1451648 Leptothrix cholodnii SP-6 6159774 YP_001790402.1 CDS Lcho_1369 NC_010524.1 1451678 1452802 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: bxe:Bxe_B1435 electron transfer flavoprotein FixB (alpha subunit); electron transfer flavoprotein alpha/beta-subunit 1451678..1452802 Leptothrix cholodnii SP-6 6159987 YP_001790403.1 CDS Lcho_1370 NC_010524.1 1452821 1454125 D PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: pna:Pnap_2315 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 1452821..1454125 Leptothrix cholodnii SP-6 6159988 YP_001790404.1 CDS Lcho_1371 NC_010524.1 1454122 1454418 D KEGG: bvi:Bcep1808_5981 putative ferredoxin like protein; FixX; putative ferredoxin-like protein FixX 1454122..1454418 Leptothrix cholodnii SP-6 6159989 YP_001790405.1 CDS Lcho_1372 NC_010524.1 1454682 1456463 D KEGG: pna:Pnap_1570 transcriptional regulator, NifA, fis family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; transcriptional regulator NifA 1454682..1456463 Leptothrix cholodnii SP-6 6159990 YP_001790406.1 CDS Lcho_1373 NC_010524.1 1456593 1457390 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA3019 phosphate regulon transcriptional regulatory protein PhoB; two component transcriptional regulator 1456593..1457390 Leptothrix cholodnii SP-6 6159991 YP_001790407.1 CDS Lcho_1374 NC_010524.1 1457425 1458228 D PFAM: regulatory protein LuxR; KEGG: nmu:Nmul_A2579 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 1457425..1458228 Leptothrix cholodnii SP-6 6159992 YP_001790408.1 CDS Lcho_1375 NC_010524.1 1458232 1458888 R KEGG: nmc:NMC0423 probable insertion element IS1016 transposase; putative insertion element IS1016 transposase complement(1458232..1458888) Leptothrix cholodnii SP-6 6159757 YP_001790409.1 CDS Lcho_1376 NC_010524.1 1459090 1460487 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: mms:mma_0633 exopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 1459090..1460487 Leptothrix cholodnii SP-6 6159758 YP_001790410.1 CDS Lcho_1377 NC_010524.1 1460509 1461411 D TIGRFAM: capsular exopolysaccharide family; KEGG: mms:mma_0634 mrp-like protein; exopolysaccharide tyrosine-protein kinase 1460509..1461411 Leptothrix cholodnii SP-6 6159759 YP_001790411.1 CDS Lcho_1378 NC_010524.1 1461883 1463175 D PFAM: Fibronectin type III domain protein; KEGG: ret:RHE_CH01068 hypothetical protein; fibronectin type III domain-containing protein 1461883..1463175 Leptothrix cholodnii SP-6 6159760 YP_001790412.1 CDS Lcho_1379 NC_010524.1 1463222 1464553 D hypothetical protein 1463222..1464553 Leptothrix cholodnii SP-6 6159761 YP_001790413.1 CDS Lcho_1380 NC_010524.1 1464518 1465315 R KEGG: mst:Msp_0062 hypothetical protein; hypothetical protein complement(1464518..1465315) Leptothrix cholodnii SP-6 6159762 YP_001790414.1 CDS Lcho_1381 NC_010524.1 1465329 1466309 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0844 glycosyltransferase involved in cell wall biogenesis-like; glycosyl transferase family protein complement(1465329..1466309) Leptothrix cholodnii SP-6 6159836 YP_001790415.1 CDS Lcho_1382 NC_010524.1 1466327 1467277 R PFAM: glycosyl transferase family 8; KEGG: lsa:LSA1474 putative bifunctional glycosyl transferase, family 8; glycosyl transferase family protein complement(1466327..1467277) Leptothrix cholodnii SP-6 6159837 YP_001790416.1 CDS Lcho_1383 NC_010524.1 1467294 1468313 R PFAM: glycosyl transferase family 2; KEGG: smd:Smed_4802 glycosyl transferase family 2; glycosyl transferase family protein complement(1467294..1468313) Leptothrix cholodnii SP-6 6159838 YP_001790417.1 CDS Lcho_1384 NC_010524.1 1468310 1469644 R KEGG: nar:Saro_3228 hypothetical protein; hypothetical protein complement(1468310..1469644) Leptothrix cholodnii SP-6 6159839 YP_001790418.1 CDS Lcho_1385 NC_010524.1 1469641 1470771 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ade:Adeh_4176 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(1469641..1470771) Leptothrix cholodnii SP-6 6159840 YP_001790419.1 CDS Lcho_1386 NC_010524.1 1470768 1471976 R KEGG: aeh:Mlg_0113 hypothetical protein; hypothetical protein complement(1470768..1471976) Leptothrix cholodnii SP-6 6159841 YP_001790420.1 CDS Lcho_1387 NC_010524.1 1472005 1472676 R PFAM: Methyltransferase type 11; KEGG: rpd:RPD_3889 methyltransferase type 11; type 11 methyltransferase complement(1472005..1472676) Leptothrix cholodnii SP-6 6160301 YP_001790421.1 CDS Lcho_1388 NC_010524.1 1472673 1473647 R PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4265 glycosyl transferase, family 2; glycosyl transferase family protein complement(1472673..1473647) Leptothrix cholodnii SP-6 6160302 YP_001790422.1 CDS Lcho_1389 NC_010524.1 1473659 1475536 R KEGG: hau:Haur_3584 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase complement(1473659..1475536) Leptothrix cholodnii SP-6 6160303 YP_001790423.1 CDS Lcho_1390 NC_010524.1 1475511 1476419 R PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_0967 glycosyl transferase, family 2; glycosyl transferase family protein complement(1475511..1476419) Leptothrix cholodnii SP-6 6160304 YP_001790424.1 CDS Lcho_1391 NC_010524.1 1476416 1477501 R KEGG: pgi:PG0114 hypothetical protein; hypothetical protein complement(1476416..1477501) Leptothrix cholodnii SP-6 6160305 YP_001790425.1 CDS Lcho_1392 NC_010524.1 1477502 1480084 R PFAM: polysaccharide biosynthesis protein; protein of unknown function DUF354; KEGG: smd:Smed_4810 polysaccharide biosynthesis protein; hypothetical protein complement(1477502..1480084) Leptothrix cholodnii SP-6 6160306 YP_001790426.1 CDS Lcho_1393 NC_010524.1 1480100 1481278 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ret:RHE_CH01368 probable aminotransferase protein (involved in cell wall biogenesis); glutamine--scyllo-inositol transaminase complement(1480100..1481278) Leptothrix cholodnii SP-6 6159918 YP_001790427.1 CDS Lcho_1394 NC_010524.1 1481275 1482252 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_4059 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1481275..1482252) Leptothrix cholodnii SP-6 6159919 YP_001790428.1 CDS Lcho_1395 NC_010524.1 1482283 1483494 R PFAM: sugar transferase; KEGG: sfu:Sfum_0975 undecaprenyl-phosphate galactose phosphotransferase; undecaprenyl-phosphate galactose phosphotransferase complement(1482283..1483494) Leptothrix cholodnii SP-6 6159920 YP_001790429.1 CDS Lcho_1396 NC_010524.1 1483684 1484163 D KEGG: mag:amb0106 acetyltransferase; acetyltransferase 1483684..1484163 Leptothrix cholodnii SP-6 6159921 YP_001790430.1 CDS Lcho_1397 NC_010524.1 1484182 1485240 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: nha:Nham_3041 oxidoreductase-like; oxidoreductase domain-containing protein 1484182..1485240 Leptothrix cholodnii SP-6 6159922 YP_001790431.1 CDS Lcho_1398 NC_010524.1 1485237 1486499 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cau:Caur_1631 glutamine--scyllo-inositol transaminase; glutamine--scyllo-inositol transaminase 1485237..1486499 Leptothrix cholodnii SP-6 6159923 YP_001790432.1 CDS Lcho_1399 NC_010524.1 1486354 1487406 R KEGG: amr:AM1_5765 hypothetical protein; hypothetical protein complement(1486354..1487406) Leptothrix cholodnii SP-6 6160020 YP_001790433.1 CDS Lcho_1400 NC_010524.1 1487765 1488382 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sat:SYN_01953 response regulator with a HTH DNA-binding domain; two component LuxR family transcriptional regulator 1487765..1488382 Leptothrix cholodnii SP-6 6160021 YP_001790434.1 CDS Lcho_1401 NC_010524.1 1488505 1489659 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: dar:Daro_1573 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region; response regulator receiver sensor signal transduction histidine kinase 1488505..1489659 Leptothrix cholodnii SP-6 6160022 YP_001790435.1 CDS Lcho_1402 NC_010524.1 1489656 1490291 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc0292 response regulator transcription regulator protein; two component LuxR family transcriptional regulator 1489656..1490291 Leptothrix cholodnii SP-6 6160023 YP_001790436.1 CDS Lcho_1403 NC_010524.1 1490276 1491091 R KEGG: rme:Rmet_5178 hypothetical protein; hypothetical protein complement(1490276..1491091) Leptothrix cholodnii SP-6 6160024 YP_001790437.1 CDS Lcho_1404 NC_010524.1 1491299 1492888 D TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: bvi:Bcep1808_5994 nitrogenase cofactor biosynthesis protein NifB; nitrogenase cofactor biosynthesis protein NifB 1491299..1492888 Leptothrix cholodnii SP-6 6160025 YP_001790438.1 CDS Lcho_1405 NC_010524.1 1492933 1493127 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bvi:Bcep1808_5995 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1492933..1493127 Leptothrix cholodnii SP-6 6159924 YP_001790439.1 CDS Lcho_1406 NC_010524.1 1493136 1493540 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1447 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 1493136..1493540 Leptothrix cholodnii SP-6 6159925 YP_001790440.1 CDS Lcho_1407 NC_010524.1 1493565 1494215 D KEGG: pna:Pnap_1577 hypothetical protein; hypothetical protein 1493565..1494215 Leptothrix cholodnii SP-6 6159926 YP_001790441.1 CDS Lcho_1408 NC_010524.1 1494215 1495027 D PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: bxe:Bxe_B1449 hypothetical protein; LRV FeS4 cluster domain-containing protein 1494215..1495027 Leptothrix cholodnii SP-6 6159927 YP_001790442.1 CDS Lcho_1409 NC_010524.1 1495041 1495376 D PFAM: NifZ family protein; KEGG: bxe:Bxe_B1450 hypothetical protein; NifZ family protein 1495041..1495376 Leptothrix cholodnii SP-6 6159928 YP_001790443.1 CDS Lcho_1410 NC_010524.1 1495392 1495670 D KEGG: mca:MCA0210 NifZ protein, putative; NifZ protein 1495392..1495670 Leptothrix cholodnii SP-6 6159929 YP_001790444.1 CDS Lcho_1411 NC_010524.1 1495673 1496089 D KEGG: bxe:Bxe_B1452 hypothetical protein; hypothetical protein 1495673..1496089 Leptothrix cholodnii SP-6 6160052 YP_001790445.1 CDS Lcho_1412 NC_010524.1 1496086 1497261 D PFAM: aminotransferase class V; KEGG: bvi:Bcep1808_6002 aminotransferase, class V; class V aminotransferase 1496086..1497261 Leptothrix cholodnii SP-6 6160053 YP_001790446.1 CDS Lcho_1413 NC_010524.1 1497306 1497524 D TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mca:MCA0213 hypothetical protein; nitrogen fixation protein FixT 1497306..1497524 Leptothrix cholodnii SP-6 6160054 YP_001790447.1 CDS Lcho_1414 NC_010524.1 1497536 1497823 D KEGG: pna:Pnap_1584 hypothetical protein; hypothetical protein 1497536..1497823 Leptothrix cholodnii SP-6 6160055 YP_001790448.1 CDS Lcho_1415 NC_010524.1 1497828 1499033 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bvi:Bcep1808_6005 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1497828..1499033 Leptothrix cholodnii SP-6 6160056 YP_001790449.1 CDS Lcho_1416 NC_010524.1 1499045 1499887 D KEGG: pna:Pnap_1586 hypothetical protein; hypothetical protein 1499045..1499887 Leptothrix cholodnii SP-6 6160057 YP_001790450.1 CDS Lcho_1417 NC_010524.1 1499933 1500238 D PFAM: ferredoxin; KEGG: bbt:BBta_5894 putative ferredoxin, 2Fe-2S; ferredoxin 1499933..1500238 Leptothrix cholodnii SP-6 6160103 YP_001790451.1 CDS Lcho_1418 NC_010524.1 1500294 1501484 D PFAM: amine oxidase; KEGG: azc:AZC_3405 flavin-containing protein; amine oxidase 1500294..1501484 Leptothrix cholodnii SP-6 6160104 YP_001790452.1 CDS Lcho_1419 NC_010524.1 1501494 1501850 D hypothetical protein 1501494..1501850 Leptothrix cholodnii SP-6 6160105 YP_001790453.1 CDS Lcho_1420 NC_010524.1 1501989 1502861 D KEGG: pna:Pnap_1062 hypothetical protein; hypothetical protein 1501989..1502861 Leptothrix cholodnii SP-6 6160106 YP_001790454.1 CDS Lcho_1421 NC_010524.1 1502863 1503447 R PFAM: Phosphoglycerate mutase; KEGG: mpt:Mpe_A3811 hypothetical protein; putative phosphohistidine phosphatase SixA complement(1502863..1503447) Leptothrix cholodnii SP-6 6160107 YP_001790455.1 CDS Lcho_1422 NC_010524.1 1503483 1503794 R KEGG: rfr:Rfer_1416 hypothetical protein; hypothetical protein complement(1503483..1503794) Leptothrix cholodnii SP-6 6160108 YP_001790456.1 CDS Lcho_1423 NC_010524.1 1503881 1504300 R PFAM: Immunoglobulin I-set domain protein; SMART: Immunoglobulin subtype; KEGG: dsy:DSY0542 hypothetical protein; immunoglobulin I-set domain-containing protein complement(1503881..1504300) Leptothrix cholodnii SP-6 6160215 YP_001790457.1 CDS Lcho_1424 NC_010524.1 1504573 1506354 D PFAM: protein of unknown function DUF255; KEGG: pna:Pnap_2043 protein of unknown function DUF255; hypothetical protein 1504573..1506354 Leptothrix cholodnii SP-6 6160216 YP_001790458.1 CDS Lcho_1425 NC_010524.1 1506535 1507680 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_1745 diguanylate cyclase (GGDEF domain); diguanylate cyclase 1506535..1507680 Leptothrix cholodnii SP-6 6160217 YP_001790459.1 CDS Lcho_1426 NC_010524.1 1507800 1508096 R KEGG: bra:BRADO1846 hypothetical protein; hypothetical protein complement(1507800..1508096) Leptothrix cholodnii SP-6 6160218 YP_001790460.1 CDS Lcho_1427 NC_010524.1 1508152 1508394 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: pna:Pnap_2352 putative regulatory protein, FmdB family; FmdB family regulatory protein complement(1508152..1508394) Leptothrix cholodnii SP-6 6160219 YP_001790461.1 CDS Lcho_1428 NC_010524.1 1508550 1509140 R KEGG: bvi:Bcep1808_6012 hypothetical protein; hypothetical protein complement(1508550..1509140) Leptothrix cholodnii SP-6 6160220 YP_001790462.1 CDS Lcho_1429 NC_010524.1 1509189 1509326 R hypothetical protein complement(1509189..1509326) Leptothrix cholodnii SP-6 6160270 YP_001790463.1 CDS nifH NC_010524.1 1509709 1510590 D nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase 1509709..1510590 Leptothrix cholodnii SP-6 6160271 YP_001790464.1 CDS Lcho_1431 NC_010524.1 1510701 1512158 D KEGG: bxe:Bxe_B1466 nitrogenase, molybdenum-iron protein alpha chain(NifD); TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha 1510701..1512158 Leptothrix cholodnii SP-6 6160272 YP_001790465.1 CDS Lcho_1432 NC_010524.1 1512287 1513846 D KEGG: bvi:Bcep1808_6017 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta 1512287..1513846 Leptothrix cholodnii SP-6 6160273 YP_001790466.1 CDS Lcho_1433 NC_010524.1 1513984 1514301 D KEGG: pna:Pnap_2341 hypothetical protein; hypothetical protein 1513984..1514301 Leptothrix cholodnii SP-6 6160274 YP_001790467.1 CDS Lcho_1434 NC_010524.1 1514339 1514824 D KEGG: pna:Pnap_2339 hypothetical protein; hypothetical protein 1514339..1514824 Leptothrix cholodnii SP-6 6160275 YP_001790468.1 CDS Lcho_1435 NC_010524.1 1514852 1515370 D TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSC20 oligomerisation; KEGG: mpt:Mpe_A2259 chaperone protein; co-chaperone Hsc20 1514852..1515370 Leptothrix cholodnii SP-6 6159842 YP_001790469.1 CDS Lcho_1436 NC_010524.1 1515381 1516226 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: dac:Daci_4439 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1515381..1516226) Leptothrix cholodnii SP-6 6159843 YP_001790470.1 CDS Lcho_1437 NC_010524.1 1516388 1517203 D PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: pol:Bpro_1847 shikimate 5-dehydrogenase; shikimate dehydrogenase 1516388..1517203 Leptothrix cholodnii SP-6 6159844 YP_001790471.1 CDS Lcho_1438 NC_010524.1 1517253 1518269 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit Dctp 1517253..1518269 Leptothrix cholodnii SP-6 6159845 YP_001790472.1 CDS Lcho_1439 NC_010524.1 1518314 1519168 R PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: pna:Pnap_0622 NmrA family protein; NmrA family protein complement(1518314..1519168) Leptothrix cholodnii SP-6 6159846 YP_001790473.1 CDS Lcho_1440 NC_010524.1 1519257 1519697 D PFAM: helix-turn-helix HxlR type; KEGG: pna:Pnap_0621 transcriptional regulator, HxlR family; HxlR family transcriptional regulator 1519257..1519697 Leptothrix cholodnii SP-6 6159847 YP_001790474.1 CDS Lcho_1441 NC_010524.1 1519615 1520466 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ajs:Ajs_1913 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(1519615..1520466) Leptothrix cholodnii SP-6 6160367 YP_001790475.1 CDS Lcho_1442 NC_010524.1 1520708 1522429 D PFAM: cytochrome d1 heme region; KEGG: ajs:Ajs_1912 nitrite reductase (NO-forming); hydroxylamine reductase 1520708..1522429 Leptothrix cholodnii SP-6 6160368 YP_001790476.1 CDS Lcho_1443 NC_010524.1 1522637 1522966 D KEGG: ajs:Ajs_1911 hypothetical protein; hypothetical protein 1522637..1522966 Leptothrix cholodnii SP-6 6160369 YP_001790477.1 CDS Lcho_1444 NC_010524.1 1522963 1524156 D PFAM: cytochrome d1 heme region; KEGG: ajs:Ajs_1910 cytochrome d1, heme region; cytochrome d1 heme subunit 1522963..1524156 Leptothrix cholodnii SP-6 6160370 YP_001790478.1 CDS Lcho_1445 NC_010524.1 1524171 1525187 D KEGG: ajs:Ajs_1909 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1524171..1525187 Leptothrix cholodnii SP-6 6160371 YP_001790479.1 CDS Lcho_1446 NC_010524.1 1525174 1525665 D KEGG: ajs:Ajs_1908 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1525174..1525665 Leptothrix cholodnii SP-6 6160372 YP_001790480.1 CDS Lcho_1447 NC_010524.1 1525655 1526137 D KEGG: ajs:Ajs_1907 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1525655..1526137 Leptothrix cholodnii SP-6 6161120 YP_001790481.1 CDS Lcho_1448 NC_010524.1 1526145 1527401 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ajs:Ajs_1906 radical SAM domain protein; radical SAM domain-containing protein 1526145..1527401 Leptothrix cholodnii SP-6 6161121 YP_001790482.1 CDS Lcho_1449 NC_010524.1 1527582 1530419 D KEGG: dar:Daro_2934 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1527582..1530419 Leptothrix cholodnii SP-6 6161122 YP_001790483.1 CDS Lcho_1450 NC_010524.1 1530590 1532167 D PFAM: cytochrome d1 heme region; KEGG: ajs:Ajs_1905 cytochrome d1, heme region; cytochrome d1 heme subunit 1530590..1532167 Leptothrix cholodnii SP-6 6161123 YP_001790484.1 CDS Lcho_1451 NC_010524.1 1532188 1533342 R KEGG: gvi:glr2981 hypothetical protein; hypothetical protein complement(1532188..1533342) Leptothrix cholodnii SP-6 6161124 YP_001790485.1 CDS Lcho_1452 NC_010524.1 1533339 1534490 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1962 hypothetical protein; hypothetical protein complement(1533339..1534490) Leptothrix cholodnii SP-6 6161125 YP_001790486.1 CDS Lcho_1453 NC_010524.1 1534573 1534791 D hypothetical protein 1534573..1534791 Leptothrix cholodnii SP-6 6162847 YP_001790487.1 CDS Lcho_1454 NC_010524.1 1534856 1535614 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_1904 putative transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(1534856..1535614) Leptothrix cholodnii SP-6 6162848 YP_001790488.1 CDS Lcho_1455 NC_010524.1 1535705 1536382 R PFAM: protein of unknown function DUF799; KEGG: psp:PSPPH_1127 lipoprotein, putative; hypothetical protein complement(1535705..1536382) Leptothrix cholodnii SP-6 6162849 YP_001790489.1 CDS Lcho_1456 NC_010524.1 1536379 1536759 R KEGG: reh:H16_B0250 lipoprotein; lipoprotein complement(1536379..1536759) Leptothrix cholodnii SP-6 6162850 YP_001790490.1 CDS Lcho_1457 NC_010524.1 1536756 1537433 R PFAM: Curli production assembly/transport component CsgG; KEGG: pap:PSPA7_0048 lipoprotein, putative; curli production assembly/transport component CsgG complement(1536756..1537433) Leptothrix cholodnii SP-6 6162851 YP_001790491.1 CDS Lcho_1458 NC_010524.1 1537528 1537983 R TIGRFAM: hydrogenase maturation protease; KEGG: bxe:Bxe_C0532 hypothetical protein; hydrogenase maturation protease complement(1537528..1537983) Leptothrix cholodnii SP-6 6162852 YP_001790492.1 CDS Lcho_1459 NC_010524.1 1538004 1539518 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: bxe:Bxe_C0531 putative nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit complement(1538004..1539518) Leptothrix cholodnii SP-6 6163313 YP_001790493.1 CDS Lcho_1460 NC_010524.1 1539661 1540236 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rfr:Rfer_3856 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(1539661..1540236) Leptothrix cholodnii SP-6 6163314 YP_001790494.1 CDS Lcho_1461 NC_010524.1 1540233 1540937 R PFAM: ferredoxin; KEGG: rfr:Rfer_3857 hydrogen dehydrogenase; ferredoxin complement(1540233..1540937) Leptothrix cholodnii SP-6 6163315 YP_001790495.1 CDS Lcho_1462 NC_010524.1 1540934 1542817 R PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rfr:Rfer_3858 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; respiratory-chain NADH dehydrogenase domain-containing protein complement(1540934..1542817) Leptothrix cholodnii SP-6 6163316 YP_001790496.1 CDS Lcho_1463 NC_010524.1 1542933 1544027 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: aha:AHA_2190 response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; response regulator receiver modulated metal dependent phosphohydrolase 1542933..1544027 Leptothrix cholodnii SP-6 6163317 YP_001790497.1 CDS Lcho_1464 NC_010524.1 1544049 1547456 D KEGG: aha:AHA_2188 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1544049..1547456 Leptothrix cholodnii SP-6 6163318 YP_001790498.1 CDS Lcho_1465 NC_010524.1 1547472 1549328 R PFAM: von Willebrand factor type A; small acid-soluble spore P family protein; KEGG: dar:Daro_3197 von Willebrand factor, type A; von Willebrand factor type A complement(1547472..1549328) Leptothrix cholodnii SP-6 6161540 YP_001790499.1 CDS Lcho_1466 NC_010524.1 1549328 1550362 R KEGG: tbd:Tbd_0556 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(1549328..1550362) Leptothrix cholodnii SP-6 6161541 YP_001790500.1 CDS Lcho_1467 NC_010524.1 1550454 1551287 R PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: tbd:Tbd_0558 putative nitric oxide reductase activation protein NorQ; ATPase complement(1550454..1551287) Leptothrix cholodnii SP-6 6161542 YP_001790501.1 CDS Lcho_1468 NC_010524.1 1551320 1552771 R PFAM: cytochrome c oxidase subunit I; KEGG: azo:azo3089 putative nitric-oxide reductase subunit B; cytochrome c oxidase subunit I complement(1551320..1552771) Leptothrix cholodnii SP-6 6161543 YP_001790502.1 CDS Lcho_1469 NC_010524.1 1552783 1553217 R KEGG: azo:azo3088 putative nitric-oxide reductase subunit C; putative nitric-oxide reductase subunit C complement(1552783..1553217) Leptothrix cholodnii SP-6 6161544 YP_001790503.1 CDS Lcho_1470 NC_010524.1 1553389 1554399 D PFAM: peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32; peptidase U32 1553389..1554399 Leptothrix cholodnii SP-6 6161545 YP_001790504.1 CDS Lcho_1471 NC_010524.1 1554445 1555398 D PFAM: peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32; peptidase U32 1554445..1555398 Leptothrix cholodnii SP-6 6161576 YP_001790505.1 CDS Lcho_1472 NC_010524.1 1555395 1555862 D PFAM: Sterol-binding domain protein; KEGG: azo:azo0372 hypothetical protein; sterol-binding domain-containing protein 1555395..1555862 Leptothrix cholodnii SP-6 6161577 YP_001790506.1 CDS Lcho_1473 NC_010524.1 1555886 1557058 R PFAM: CBS domain containing protein; HPP family protein?; KEGG: mpt:Mpe_A0317 CBS domain protein; hypothetical protein complement(1555886..1557058) Leptothrix cholodnii SP-6 6161578 YP_001790507.1 CDS Lcho_1474 NC_010524.1 1557224 1557493 D KEGG: rme:Rmet_4922 hypothetical protein; hypothetical protein 1557224..1557493 Leptothrix cholodnii SP-6 6161579 YP_001790508.1 CDS Lcho_1475 NC_010524.1 1557509 1558708 D PFAM: NnrS family protein; KEGG: pna:Pnap_3970 NnrS family protein; NnrS family protein 1557509..1558708 Leptothrix cholodnii SP-6 6161580 YP_001790509.1 CDS Lcho_1476 NC_010524.1 1558716 1559213 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_1866 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 1558716..1559213 Leptothrix cholodnii SP-6 6161581 YP_001790510.1 CDS Lcho_1477 NC_010524.1 1559210 1560655 D TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pna:Pnap_2096 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase accessory protein CcoG 1559210..1560655 Leptothrix cholodnii SP-6 6162012 YP_001790511.1 CDS Lcho_1478 NC_010524.1 1560683 1561258 R PFAM: NosL family protein; KEGG: ajs:Ajs_1134 NosL family protein; NosL family protein complement(1560683..1561258) Leptothrix cholodnii SP-6 6162013 YP_001790512.1 CDS Lcho_1479 NC_010524.1 1561255 1562070 R PFAM: ABC-2 type transporter; KEGG: ajs:Ajs_1135 ABC-2 type transporter; ABC-2 type transporter complement(1561255..1562070) Leptothrix cholodnii SP-6 6162014 YP_001790513.1 CDS Lcho_1480 NC_010524.1 1562070 1563086 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1136 ABC transporter related; ABC transporter-like protein complement(1562070..1563086) Leptothrix cholodnii SP-6 6162015 YP_001790514.1 CDS Lcho_1481 NC_010524.1 1563076 1564278 R PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: ajs:Ajs_1137 periplasmic copper-binding; periplasmic copper-binding protein complement(1563076..1564278) Leptothrix cholodnii SP-6 6162016 YP_001790515.1 CDS Lcho_1482 NC_010524.1 1564368 1567028 R PFAM: FMN-binding domain protein; KEGG: ajs:Ajs_1138 FMN-binding domain protein; FMN-binding domain-containing protein complement(1564368..1567028) Leptothrix cholodnii SP-6 6162017 YP_001790516.1 CDS Lcho_1483 NC_010524.1 1567078 1569012 R reduces nitrous oxide to nitrogen; nitrous-oxide reductase complement(1567078..1569012) Leptothrix cholodnii SP-6 6162221 YP_001790517.1 CDS Lcho_1484 NC_010524.1 1569259 1570368 D PFAM: ApbE family lipoprotein; KEGG: rso:RSp1366 probable thiamine biosynthesis ApbE transmembrane protein; ApbE family lipoprotein 1569259..1570368 Leptothrix cholodnii SP-6 6162222 YP_001790518.1 CDS Lcho_1485 NC_010524.1 1570365 1571669 D KEGG: mpt:Mpe_A1702 putative NnrS family; NnrS family protein 1570365..1571669 Leptothrix cholodnii SP-6 6162223 YP_001790519.1 CDS Lcho_1486 NC_010524.1 1571714 1572031 D PFAM: protein of unknown function DUF59; KEGG: mpt:Mpe_A1701 hypothetical protein; hypothetical protein 1571714..1572031 Leptothrix cholodnii SP-6 6162224 YP_001790520.1 CDS Lcho_1487 NC_010524.1 1572049 1573170 D KEGG: pol:Bpro_4726 hypothetical protein; hypothetical protein 1572049..1573170 Leptothrix cholodnii SP-6 6162225 YP_001790521.1 CDS Lcho_1488 NC_010524.1 1573231 1573536 R PFAM: cytochrome c class I; KEGG: pol:Bpro_2050 cytochrome c, class I; cytochrome c class I complement(1573231..1573536) Leptothrix cholodnii SP-6 6162226 YP_001790522.1 CDS Lcho_1489 NC_010524.1 1573707 1573970 D KEGG: pol:Bpro_2051 hypothetical protein; hypothetical protein 1573707..1573970 Leptothrix cholodnii SP-6 6162306 YP_001790523.1 CDS Lcho_1490 NC_010524.1 1573992 1575674 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1573992..1575674) Leptothrix cholodnii SP-6 6162307 YP_001790524.1 CDS Lcho_1491 NC_010524.1 1575775 1576701 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A1388 putative isoleucine biosynthesis transcriptional activator; LysR family transcriptional regulator 1575775..1576701 Leptothrix cholodnii SP-6 6162308 YP_001790525.1 CDS Lcho_1492 NC_010524.1 1576728 1577561 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: mpt:Mpe_A1389 putative prolipoprotein diacylglyceryl transferase transmembrane; prolipoprotein diacylglyceryl transferase 1576728..1577561 Leptothrix cholodnii SP-6 6162309 YP_001790526.1 CDS Lcho_1493 NC_010524.1 1577572 1578645 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1577572..1578645 Leptothrix cholodnii SP-6 6162310 YP_001790527.1 CDS Lcho_1494 NC_010524.1 1578694 1579974 D KEGG: pol:Bpro_3263 putative transporter signal peptide protein; putative transporter signal peptide protein 1578694..1579974 Leptothrix cholodnii SP-6 6162311 YP_001790528.1 CDS Lcho_1495 NC_010524.1 1580010 1581176 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1580010..1581176 Leptothrix cholodnii SP-6 6162409 YP_001790529.1 CDS Lcho_1496 NC_010524.1 1581315 1581578 D PFAM: ribosomal protein S15; KEGG: mpt:Mpe_A1398 30S ribosomal protein S15; 30S ribosomal protein S15 1581315..1581578 Leptothrix cholodnii SP-6 6162410 YP_001790530.1 CDS Lcho_1497 NC_010524.1 1581802 1584105 D KEGG: mpt:Mpe_A1399 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 1581802..1584105 Leptothrix cholodnii SP-6 6162411 YP_001790531.1 CDS Lcho_1498 NC_010524.1 1584118 1585104 D TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_0954 alcohol dehydrogenase, zinc-binding domain protein; PIG3 family NAD(P)H quinone oxidoreductase 1584118..1585104 Leptothrix cholodnii SP-6 6162412 YP_001790532.1 CDS Lcho_1499 NC_010524.1 1585147 1585893 D PFAM: triosephosphate isomerase; KEGG: mpt:Mpe_A1401 triphosphate isomerase; Triose-phosphate isomerase 1585147..1585893 Leptothrix cholodnii SP-6 6162413 YP_001790533.1 CDS Lcho_1500 NC_010524.1 1585929 1586330 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: mpt:Mpe_A1402 general secretory pathway, export membrane protein; preprotein translocase subunit SecG 1585929..1586330 Leptothrix cholodnii SP-6 6162414 YP_001790534.1 CDS Lcho_1501 NC_010524.1 1586824 1587183 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mpt:Mpe_A1403 NADH dehydrogenase I chain A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1586824..1587183 Leptothrix cholodnii SP-6 6162436 YP_001790535.1 CDS Lcho_1502 NC_010524.1 1587208 1587684 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1587208..1587684 Leptothrix cholodnii SP-6 6162437 YP_001790536.1 CDS Lcho_1503 NC_010524.1 1587698 1588297 D KEGG: reh:H16_A1052 NADH dehydrogenase chain C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 1587698..1588297 Leptothrix cholodnii SP-6 6162438 YP_001790537.1 CDS Lcho_1504 NC_010524.1 1588316 1589569 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1588316..1589569 Leptothrix cholodnii SP-6 6162439 YP_001790538.1 CDS Lcho_1505 NC_010524.1 1589578 1590105 D KEGG: ajs:Ajs_0961 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; NADH-quinone oxidoreductase subunit E 1589578..1590105 Leptothrix cholodnii SP-6 6161395 YP_001790539.1 CDS Lcho_1506 NC_010524.1 1590110 1591468 D KEGG: mpt:Mpe_A1408 NADH dehydrogenase (quinone); TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F 1590110..1591468 Leptothrix cholodnii SP-6 6161396 YP_001790540.1 CDS Lcho_1507 NC_010524.1 1591487 1593799 D TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase; KEGG: mpt:Mpe_A1409 putative NADH dehydrogenase I chain G; NADH-quinone oxidoreductase subunit G 1591487..1593799 Leptothrix cholodnii SP-6 6161397 YP_001790541.1 CDS Lcho_1508 NC_010524.1 1593814 1594872 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: mpt:Mpe_A1410 NADH-ubiquinone oxidoreductase, chain H; NADH dehydrogenase (quinone) 1593814..1594872 Leptothrix cholodnii SP-6 6161398 YP_001790542.1 CDS Lcho_1509 NC_010524.1 1594903 1595400 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1594903..1595400 Leptothrix cholodnii SP-6 6161399 YP_001790543.1 CDS Lcho_1510 NC_010524.1 1595475 1596125 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: mpt:Mpe_A1412 NADH-ubiquinone oxidoreductase, chain J; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1595475..1596125 Leptothrix cholodnii SP-6 6161400 YP_001790544.1 CDS Lcho_1511 NC_010524.1 1596125 1596430 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mpt:Mpe_A1413 putative transmembrane NADH dehydrogenase I (chain K) oxidoreductase protein; NADH-ubiquinone oxidoreductase chain 4L 1596125..1596430 Leptothrix cholodnii SP-6 6161401 YP_001790545.1 CDS Lcho_1512 NC_010524.1 1596452 1598452 D KEGG: mpt:Mpe_A1414 NADH dehydrogenase (quinone); TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1596452..1598452 Leptothrix cholodnii SP-6 6163338 YP_001790546.1 CDS Lcho_1513 NC_010524.1 1598469 1599941 D KEGG: mpt:Mpe_A1415 NADH dehydrogenase (quinone); TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1598469..1599941 Leptothrix cholodnii SP-6 6163339 YP_001790547.1 CDS Lcho_1514 NC_010524.1 1599961 1601442 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1599961..1601442 Leptothrix cholodnii SP-6 6163340 YP_001790548.1 CDS Lcho_1515 NC_010524.1 1601462 1602088 D PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1418 ADP-ribose pyrophosphatase; NUDIX hydrolase 1601462..1602088 Leptothrix cholodnii SP-6 6163341 YP_001790549.1 CDS Lcho_1516 NC_010524.1 1602099 1602581 D PFAM: protein of unknown function DUF1178; KEGG: mpt:Mpe_A1419 hypothetical protein; hypothetical protein 1602099..1602581 Leptothrix cholodnii SP-6 6163342 YP_001790550.1 CDS Lcho_1517 NC_010524.1 1602613 1604031 R PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A1420 putative oxidoreductase protein; FAD linked oxidase domain-containing protein complement(1602613..1604031) Leptothrix cholodnii SP-6 6163343 YP_001790551.1 CDS Lcho_1518 NC_010524.1 1604028 1604402 R KEGG: mpt:Mpe_A1421 putative transmembrane protein; putative transmembrane protein complement(1604028..1604402) Leptothrix cholodnii SP-6 6161563 YP_001790552.1 CDS Lcho_1519 NC_010524.1 1604515 1605789 D PFAM: ribonuclease BN; KEGG: mpt:Mpe_A1422 putative ribonuclease BN transmembrane protein; ribonuclease BN 1604515..1605789 Leptothrix cholodnii SP-6 6161564 YP_001790553.1 CDS Lcho_1520 NC_010524.1 1605959 1607590 D KEGG: mpt:Mpe_A2920 aerotaxis sensor receptor; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 1605959..1607590 Leptothrix cholodnii SP-6 6161565 YP_001790554.1 CDS Lcho_1521 NC_010524.1 1607599 1608462 R PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_A1356 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein complement(1607599..1608462) Leptothrix cholodnii SP-6 6161566 YP_001790555.1 CDS Lcho_1522 NC_010524.1 1608462 1609820 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1608462..1609820) Leptothrix cholodnii SP-6 6161567 YP_001790556.1 CDS Lcho_1523 NC_010524.1 1609896 1610369 D PFAM: CBS domain containing protein; KEGG: mpt:Mpe_A1423 hypothetical protein; signal-transduction protein 1609896..1610369 Leptothrix cholodnii SP-6 6161568 YP_001790557.1 CDS Lcho_1524 NC_010524.1 1610441 1611004 R PFAM: CheW domain protein; KEGG: mpt:Mpe_A0587 chemotaxis signal transduction protein; CheW protein complement(1610441..1611004) Leptothrix cholodnii SP-6 6161616 YP_001790558.1 CDS Lcho_1525 NC_010524.1 1611259 1612416 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1611259..1612416 Leptothrix cholodnii SP-6 6161617 YP_001790559.1 CDS Lcho_1526 NC_010524.1 1612439 1613551 R PFAM: CheB methylesterase; response regulator receiver; KEGG: dar:Daro_1148 chemotaxis-specific methylesterase; response regulator receiver modulated CheB methylesterase complement(1612439..1613551) Leptothrix cholodnii SP-6 6161618 YP_001790560.1 CDS Lcho_1527 NC_010524.1 1613594 1614076 R stimulates methylation of MCP proteins; KEGG: hch:HCH_03704 chemotaxis protein, stimulates methylation of MCP protein; hypothetical protein complement(1613594..1614076) Leptothrix cholodnii SP-6 6161619 YP_001790561.1 CDS Lcho_1528 NC_010524.1 1614090 1614890 R PFAM: MCP methyltransferase CheR-type; KEGG: aav:Aave_3546 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase complement(1614090..1614890) Leptothrix cholodnii SP-6 6161620 YP_001790562.1 CDS Lcho_1529 NC_010524.1 1614887 1615438 R PFAM: CheW domain protein; KEGG: cvi:CV_1012 signal transduction chemotaxis protein; CheW protein complement(1614887..1615438) Leptothrix cholodnii SP-6 6161621 YP_001790563.1 CDS Lcho_1530 NC_010524.1 1615460 1618132 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: aha:AHA_1033 methyl-accepting chemotaxis protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer complement(1615460..1618132) Leptothrix cholodnii SP-6 6161682 YP_001790564.1 CDS Lcho_1531 NC_010524.1 1618210 1621269 R TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: asa:ASA_3269 methyl-accepting chemotaxis protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer complement(1618210..1621269) Leptothrix cholodnii SP-6 6161683 YP_001790565.1 CDS Lcho_1532 NC_010524.1 1621359 1623920 R KEGG: asa:ASA_3269 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer complement(1621359..1623920) Leptothrix cholodnii SP-6 6161684 YP_001790566.1 CDS Lcho_1533 NC_010524.1 1623946 1626198 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aha:AHA_1036 chemotaxis protein CheA; CheA signal transduction histidine kinase complement(1623946..1626198) Leptothrix cholodnii SP-6 6161685 YP_001790567.1 CDS Lcho_1534 NC_010524.1 1626195 1626527 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: azo:azo0409 putative STAS domain protein; anti-sigma-factor antagonist complement(1626195..1626527) Leptothrix cholodnii SP-6 6161686 YP_001790568.1 CDS Lcho_1535 NC_010524.1 1626537 1626902 R PFAM: response regulator receiver; KEGG: psp:PSPPH_0807 chemotaxis protein CheY; response regulator receiver protein complement(1626537..1626902) Leptothrix cholodnii SP-6 6161687 YP_001790569.1 CDS Lcho_1536 NC_010524.1 1626908 1627276 R PFAM: response regulator receiver; KEGG: aha:AHA_1038 chemotaxis protein CheY; response regulator receiver protein complement(1626908..1627276) Leptothrix cholodnii SP-6 6161295 YP_001790570.1 CDS Lcho_1537 NC_010524.1 1627291 1628424 R PFAM: chemotaxis sensory transducer; KEGG: pmy:Pmen_1571 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1627291..1628424) Leptothrix cholodnii SP-6 6161296 YP_001790571.1 CDS Lcho_1538 NC_010524.1 1628769 1630010 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2342 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1628769..1630010 Leptothrix cholodnii SP-6 6161297 YP_001790572.1 CDS Lcho_1539 NC_010524.1 1630110 1632155 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: vei:Veis_4873 diguanylate cyclase with PAS/PAC sensor; PAS/PAC sensor-containing diguanylate cyclase 1630110..1632155 Leptothrix cholodnii SP-6 6161298 YP_001790573.1 CDS Lcho_1540 NC_010524.1 1632626 1633465 D KEGG: aba:Acid345_0468 hypothetical protein; hypothetical protein 1632626..1633465 Leptothrix cholodnii SP-6 6161299 YP_001790574.1 CDS Lcho_1541 NC_010524.1 1633530 1635500 D KEGG: mca:MCA2189 cytochrome c family protein; cytochrome c family protein 1633530..1635500 Leptothrix cholodnii SP-6 6161300 YP_001790575.1 CDS Lcho_1542 NC_010524.1 1635497 1637464 D TIGRFAM: cytochrome C family protein; KEGG: aba:Acid345_0471 hypothetical protein; cytochrome C family protein 1635497..1637464 Leptothrix cholodnii SP-6 6161589 YP_001790576.1 CDS Lcho_1543 NC_010524.1 1637565 1640069 D PFAM: Sporulation domain protein; KEGG: mca:MCA2191 hypothetical protein; sporulation domain-containing protein 1637565..1640069 Leptothrix cholodnii SP-6 6161590 YP_001790577.1 CDS Lcho_1544 NC_010524.1 1640047 1640751 D KEGG: mpt:Mpe_A1215 heme ABC export system, ATP-binding protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA 1640047..1640751 Leptothrix cholodnii SP-6 6161591 YP_001790578.1 CDS Lcho_1545 NC_010524.1 1640748 1641461 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: mpt:Mpe_A1214 ABC transporter, permease domain protein; heme exporter protein CcmB 1640748..1641461 Leptothrix cholodnii SP-6 6161592 YP_001790579.1 CDS Lcho_1546 NC_010524.1 1641673 1642416 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: mpt:Mpe_A1213 ABC transporter, permease domain protein; heme exporter protein CcmC 1641673..1642416 Leptothrix cholodnii SP-6 6161593 YP_001790580.1 CDS Lcho_1547 NC_010524.1 1642413 1642568 D hypothetical protein 1642413..1642568 Leptothrix cholodnii SP-6 6161594 YP_001790581.1 CDS Lcho_1548 NC_010524.1 1642653 1643114 D PFAM: CcmE/CycJ protein; KEGG: mpt:Mpe_A1212 CcmE/CycJ protein; CcmE/CycJ protein 1642653..1643114 Leptothrix cholodnii SP-6 6163522 YP_001790582.1 CDS Lcho_1549 NC_010524.1 1643111 1645093 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: mpt:Mpe_A1211 cytochrome c-type biogenesis protein (CcmF); cytochrome c-type biogenesis protein CcmF 1643111..1645093 Leptothrix cholodnii SP-6 6163523 YP_001790583.1 CDS Lcho_1550 NC_010524.1 1645090 1645620 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A1210 periplasmic protein thiol:disulfide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 1645090..1645620 Leptothrix cholodnii SP-6 6163524 YP_001790584.1 CDS Lcho_1551 NC_010524.1 1645613 1646152 D PFAM: cytochrome C biogenesis protein; KEGG: mpt:Mpe_A1209 C-type cytochrome biogenesis protein; cytochrome C biogenesis protein 1645613..1646152 Leptothrix cholodnii SP-6 6163525 YP_001790585.1 CDS Lcho_1552 NC_010524.1 1646197 1647528 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mpt:Mpe_A1208 TPR repeat protein; hypothetical protein 1646197..1647528 Leptothrix cholodnii SP-6 6163526 YP_001790586.1 CDS Lcho_1553 NC_010524.1 1647535 1648851 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ade:Adeh_2667 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin 1647535..1648851 Leptothrix cholodnii SP-6 6163527 YP_001790587.1 CDS Lcho_1554 NC_010524.1 1648884 1649609 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH complement(1648884..1649609) Leptothrix cholodnii SP-6 6163627 YP_001790588.1 CDS Lcho_1555 NC_010524.1 1649689 1650783 R PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc0808 probable low specificity L-threonine aldolase protein; threonine aldolase complement(1649689..1650783) Leptothrix cholodnii SP-6 6163628 YP_001790589.1 CDS Lcho_1557 NC_010524.1 1652053 1653033 D PFAM: Integrase catalytic region; KEGG: bxe:Bxe_B0052 putative transposase; integrase catalytic subunit 1652053..1653033 Leptothrix cholodnii SP-6 6163630 YP_001790590.1 CDS Lcho_1558 NC_010524.1 1653146 1654159 D PFAM: protein of unknown function DUF182; KEGG: rso:RSc1463 hypothetical protein; hypothetical protein 1653146..1654159 Leptothrix cholodnii SP-6 6163631 YP_001790591.1 CDS Lcho_1559 NC_010524.1 1654197 1657115 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1654197..1657115) Leptothrix cholodnii SP-6 6163632 YP_001790592.1 CDS Lcho_1560 NC_010524.1 1657204 1657578 R TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: ajs:Ajs_1937 glycine cleavage system H protein; glycine cleavage system H protein complement(1657204..1657578) Leptothrix cholodnii SP-6 6163416 YP_001790593.1 CDS Lcho_1561 NC_010524.1 1657680 1658804 R TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mpt:Mpe_A1433 glycine cleavage system T protein; glycine cleavage system T protein complement(1657680..1658804) Leptothrix cholodnii SP-6 6163417 YP_001790594.1 CDS rdgC NC_010524.1 1659144 1660157 R Required for efficient pilin antigenic variation; recombination associated protein complement(1659144..1660157) Leptothrix cholodnii SP-6 6163418 YP_001790595.1 CDS Lcho_1563 NC_010524.1 1660307 1661599 D PFAM: metallophosphoesterase; KEGG: bur:Bcep18194_C6632 metallophosphoesterase; metallophosphoesterase 1660307..1661599 Leptothrix cholodnii SP-6 6163419 YP_001790596.1 CDS Lcho_1564 NC_010524.1 1661603 1665070 D KEGG: bvi:Bcep1808_5498 hypothetical protein; hypothetical protein 1661603..1665070 Leptothrix cholodnii SP-6 6163420 YP_001790597.1 CDS Lcho_1565 NC_010524.1 1665083 1665469 R PFAM: PilT protein domain protein; KEGG: gvi:gll3555 hypothetical protein; PilT domain-containing protein complement(1665083..1665469) Leptothrix cholodnii SP-6 6163377 YP_001790598.1 CDS Lcho_1566 NC_010524.1 1665488 1665715 R TIGRFAM: prevent-host-death family protein; KEGG: gvi:gsl3556 hypothetical protein; prevent-host-death family protein complement(1665488..1665715) Leptothrix cholodnii SP-6 6163378 YP_001790599.1 CDS tgt NC_010524.1 1665771 1666943 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1665771..1666943) Leptothrix cholodnii SP-6 6163379 YP_001790600.1 CDS Lcho_1568 NC_010524.1 1667073 1667219 D hypothetical protein 1667073..1667219 Leptothrix cholodnii SP-6 6163380 YP_001790601.1 CDS Lcho_1569 NC_010524.1 1667315 1669618 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pol:Bpro_3047 TonB-dependent siderophore receptor; TonB-dependent receptor 1667315..1669618 Leptothrix cholodnii SP-6 6163381 YP_001790602.1 CDS Lcho_1570 NC_010524.1 1669651 1670346 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pna:Pnap_2559 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 1669651..1670346 Leptothrix cholodnii SP-6 6163382 YP_001790603.1 CDS Lcho_1571 NC_010524.1 1670384 1671139 D TIGRFAM: TonB family protein; KEGG: mpt:Mpe_A3718 periplasmic protein/biopolymer transport; TonB family protein 1670384..1671139 Leptothrix cholodnii SP-6 6163270 YP_001790604.1 CDS Lcho_1572 NC_010524.1 1671161 1671961 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A3719 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1671161..1671961 Leptothrix cholodnii SP-6 6163271 YP_001790605.1 CDS Lcho_1573 NC_010524.1 1672001 1672420 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mpt:Mpe_A3720 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1672001..1672420 Leptothrix cholodnii SP-6 6163272 YP_001790606.1 CDS Lcho_1574 NC_010524.1 1672636 1673295 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mes:Meso_0341 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 1672636..1673295 Leptothrix cholodnii SP-6 6163273 YP_001790607.1 CDS Lcho_1575 NC_010524.1 1673334 1675667 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eba:ebA3794 complex two-component hybrid sensor component containing histidine kinase and response receiver domain; histidine kinase complement(1673334..1675667) Leptothrix cholodnii SP-6 6163274 YP_001790608.1 CDS Lcho_1576 NC_010524.1 1675768 1676169 R KEGG: mpt:Mpe_A3735 cytochrome c-551 precursor; cytochrome c-551 complement(1675768..1676169) Leptothrix cholodnii SP-6 6163275 YP_001790609.1 CDS Lcho_1577 NC_010524.1 1676329 1677399 R TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: mpt:Mpe_A3736 putative queuosine S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase complement(1676329..1677399) Leptothrix cholodnii SP-6 6163014 YP_001790610.1 CDS Lcho_1578 NC_010524.1 1677472 1677696 D TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE; addiction module antidote 1677472..1677696 Leptothrix cholodnii SP-6 6163015 YP_001790611.1 CDS Lcho_1579 NC_010524.1 1677703 1678107 D TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein; death-on-curing family protein 1677703..1678107 Leptothrix cholodnii SP-6 6163016 YP_001790612.1 CDS Lcho_1580 NC_010524.1 1678184 1680199 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1678184..1680199 Leptothrix cholodnii SP-6 6163017 YP_001790613.1 CDS Lcho_1581 NC_010524.1 1680212 1680883 R PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3529 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1680212..1680883) Leptothrix cholodnii SP-6 6163018 YP_001790614.1 CDS Lcho_1582 NC_010524.1 1681003 1681980 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0826 putative ATP-binding ABC transporter protein; ABC transporter-like protein 1681003..1681980 Leptothrix cholodnii SP-6 6163019 YP_001790615.1 CDS Lcho_1583 NC_010524.1 1681977 1682747 D PFAM: ABC-2 type transporter; KEGG: mpt:Mpe_A0827 putative transmembrane protein; ABC-2 type transporter 1681977..1682747 Leptothrix cholodnii SP-6 6163002 YP_001790616.1 CDS Lcho_1584 NC_010524.1 1682767 1683045 D PFAM: BolA family protein; KEGG: mpt:Mpe_A0828 transcriptional regulator BolA superfamily-like protein; BolA family protein 1682767..1683045 Leptothrix cholodnii SP-6 6163003 YP_001790617.1 CDS Lcho_1585 NC_010524.1 1683177 1684442 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1683177..1684442 Leptothrix cholodnii SP-6 6163004 YP_001790618.1 CDS hisG NC_010524.1 1684528 1685172 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1684528..1685172 Leptothrix cholodnii SP-6 6163005 YP_001790619.1 CDS hisD NC_010524.1 1685212 1686528 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1685212..1686528 Leptothrix cholodnii SP-6 6163006 YP_001790620.1 CDS Lcho_1588 NC_010524.1 1686581 1687708 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1686581..1687708 Leptothrix cholodnii SP-6 6163007 YP_001790621.1 CDS Lcho_1589 NC_010524.1 1687705 1688316 D PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: mpt:Mpe_A0833 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1687705..1688316 Leptothrix cholodnii SP-6 6162996 YP_001790622.1 CDS hisH NC_010524.1 1688399 1689046 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1688399..1689046 Leptothrix cholodnii SP-6 6162997 YP_001790623.1 CDS Lcho_1591 NC_010524.1 1689100 1689849 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1689100..1689849 Leptothrix cholodnii SP-6 6162998 YP_001790624.1 CDS Lcho_1592 NC_010524.1 1689932 1690711 D TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: pna:Pnap_0701 imidazoleglycerol phosphate synthase, cyclase subunit; Imidazole glycerol phosphate synthase cyclase subunit 1689932..1690711 Leptothrix cholodnii SP-6 6162999 YP_001790625.1 CDS Lcho_1593 NC_010524.1 1690776 1691342 R PFAM: protein of unknown function DUF1555; KEGG: nmu:Nmul_A2031 hypothetical protein; hypothetical protein complement(1690776..1691342) Leptothrix cholodnii SP-6 6163000 YP_001790626.1 CDS Lcho_1594 NC_010524.1 1691545 1692093 R KEGG: ana:all7120 unknown protein; hypothetical protein complement(1691545..1692093) Leptothrix cholodnii SP-6 6163001 YP_001790627.1 CDS Lcho_1595 NC_010524.1 1692208 1692837 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mpt:Mpe_A0581 response regulator protein; two component LuxR family transcriptional regulator complement(1692208..1692837) Leptothrix cholodnii SP-6 6162614 YP_001790628.1 CDS Lcho_1596 NC_010524.1 1692834 1693991 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: mpt:Mpe_A0582 signal transduction histidine kinase-like protein; response regulator receiver sensor signal transduction histidine kinase complement(1692834..1693991) Leptothrix cholodnii SP-6 6162615 YP_001790629.1 CDS Lcho_1597 NC_010524.1 1694228 1694689 D KEGG: mpt:Mpe_A0583 hypothetical protein; hypothetical protein 1694228..1694689 Leptothrix cholodnii SP-6 6162616 YP_001790630.1 CDS Lcho_1598 NC_010524.1 1694763 1695125 D PFAM: response regulator receiver; KEGG: mpt:Mpe_A0584 chemotaxis signal transduction protein CheY; response regulator receiver protein 1694763..1695125 Leptothrix cholodnii SP-6 6162617 YP_001790631.1 CDS Lcho_1599 NC_010524.1 1695173 1697341 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: mpt:Mpe_A0585 chemotaxis protein histidine kinase; CheA signal transduction histidine kinase 1695173..1697341 Leptothrix cholodnii SP-6 6162618 YP_001790632.1 CDS Lcho_1600 NC_010524.1 1697384 1699168 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_0035 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1697384..1699168 Leptothrix cholodnii SP-6 6162619 YP_001790633.1 CDS Lcho_1601 NC_010524.1 1699184 1700656 D PFAM: chemotaxis sensory transducer; KEGG: aav:Aave_0168 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1699184..1700656 Leptothrix cholodnii SP-6 6162043 YP_001790634.1 CDS Lcho_1602 NC_010524.1 1700657 1703281 R PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A0810 putative transmembrane protein; hypothetical protein complement(1700657..1703281) Leptothrix cholodnii SP-6 6162044 YP_001790635.1 CDS Lcho_1603 NC_010524.1 1703458 1704294 D PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: mpt:Mpe_A0756 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B 1703458..1704294 Leptothrix cholodnii SP-6 6162045 YP_001790636.1 CDS Lcho_1604 NC_010524.1 1704312 1705079 R PFAM: protein of unknown function DUF34; KEGG: mpt:Mpe_A0845 hypothetical protein; hypothetical protein complement(1704312..1705079) Leptothrix cholodnii SP-6 6162046 YP_001790637.1 CDS Lcho_1605 NC_010524.1 1705117 1706274 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mpt:Mpe_A0844 putative HtrA-like serine protease signal peptide protein; 2-alkenal reductase 1705117..1706274 Leptothrix cholodnii SP-6 6162047 YP_001790638.1 CDS Lcho_1606 NC_010524.1 1706281 1707030 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rfr:Rfer_2958 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC complement(1706281..1707030) Leptothrix cholodnii SP-6 6162048 YP_001790639.1 CDS tatB NC_010524.1 1707108 1707596 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mpt:Mpe_A0842 sec-independent translocase; sec-independent translocase complement(1707108..1707596) Leptothrix cholodnii SP-6 6160430 YP_001790640.1 CDS tatA NC_010524.1 1707627 1707875 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A complement(1707627..1707875) Leptothrix cholodnii SP-6 6160431 YP_001790641.1 CDS Lcho_1609 NC_010524.1 1707958 1708305 R PFAM: histidine triad (HIT) protein; KEGG: mpt:Mpe_A0840 hypothetical protein; histidine triad (HIT) protein complement(1707958..1708305) Leptothrix cholodnii SP-6 6160432 YP_001790642.1 CDS Lcho_1610 NC_010524.1 1708324 1708689 R TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: mpt:Mpe_A0838 phosphoribosyl-ATP pyrophosphatase; phosphoribosyl-ATP diphosphatase complement(1708324..1708689) Leptothrix cholodnii SP-6 6160433 YP_001790643.1 CDS Lcho_1611 NC_010524.1 1708686 1709075 R PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase complement(1708686..1709075) Leptothrix cholodnii SP-6 6160434 YP_001790644.1 CDS Lcho_1612 NC_010524.1 1709211 1710266 D KEGG: mpt:Mpe_A0846 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 1709211..1710266 Leptothrix cholodnii SP-6 6160435 YP_001790645.1 CDS Lcho_1613 NC_010524.1 1710281 1711147 R TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: mpt:Mpe_A3743 UbiA prenyltransferase; 4-hydroxybenzoate polyprenyltransferase complement(1710281..1711147) Leptothrix cholodnii SP-6 6163503 YP_001790646.1 CDS Lcho_1614 NC_010524.1 1711177 1713492 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: ccr:CC_0740 sensory box/GGDEF family protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1711177..1713492) Leptothrix cholodnii SP-6 6163504 YP_001790647.1 CDS Lcho_1615 NC_010524.1 1713753 1714688 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A3739 oxidative stress regulatory protein OxyR; LysR family transcriptional regulator complement(1713753..1714688) Leptothrix cholodnii SP-6 6163505 YP_001790648.1 CDS Lcho_1616 NC_010524.1 1714963 1715622 D PFAM: cytochrome c class I; KEGG: mpt:Mpe_A1095 cytochrome c553-like protein; cytochrome c class I 1714963..1715622 Leptothrix cholodnii SP-6 6163506 YP_001790649.1 CDS Lcho_1617 NC_010524.1 1715764 1716996 D KEGG: mpt:Mpe_A1096 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1715764..1716996 Leptothrix cholodnii SP-6 6163507 YP_001790650.1 CDS Lcho_1618 NC_010524.1 1717169 1718326 D TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: mpt:Mpe_A3077 flagellar biosynthesis protein; flagellar biosynthetic protein FlhB 1717169..1718326 Leptothrix cholodnii SP-6 6163508 YP_001790651.1 CDS Lcho_1619 NC_010524.1 1718323 1720425 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: mpt:Mpe_A3078 flagellar biosynthesis protein; flagellar biosynthesis protein FlhA 1718323..1720425 Leptothrix cholodnii SP-6 6160490 YP_001790652.1 CDS Lcho_1620 NC_010524.1 1720502 1722280 D PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: mpt:Mpe_A3079 flagellar GTP-binding protein; GTP-binding signal recognition particle 1720502..1722280 Leptothrix cholodnii SP-6 6160491 YP_001790653.1 CDS Lcho_1621 NC_010524.1 1722303 1723124 D KEGG: mpt:Mpe_A3080 antiactivator of flagellar biosynthesis; protein antiactivator of flagellar biosynthesis 1722303..1723124 Leptothrix cholodnii SP-6 6160492 YP_001790654.1 CDS Lcho_1622 NC_010524.1 1723142 1723858 D KEGG: mpt:Mpe_A3081 DNA-directed RNA polymerase specialized sigma subunit; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG 1723142..1723858 Leptothrix cholodnii SP-6 6160493 YP_001790655.1 CDS Lcho_1623 NC_010524.1 1723995 1725359 D PFAM: chemotaxis sensory transducer; KEGG: mpt:Mpe_A3082 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1723995..1725359 Leptothrix cholodnii SP-6 6160494 YP_001790656.1 CDS Lcho_1624 NC_010524.1 1725394 1725669 R KEGG: pol:Bpro_3703 hypothetical protein; hypothetical protein complement(1725394..1725669) Leptothrix cholodnii SP-6 6160495 YP_001790657.1 CDS Lcho_1625 NC_010524.1 1725793 1726275 R TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: aav:Aave_0314 hemerythrin-like metal-binding protein; hemerythrin-like metal-binding protein complement(1725793..1726275) Leptothrix cholodnii SP-6 6160957 YP_001790658.1 CDS Lcho_1626 NC_010524.1 1726346 1727629 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: mpt:Mpe_A3745 putative glutamic dehyrogenase; Glu/Leu/Phe/Val dehydrogenase complement(1726346..1727629) Leptothrix cholodnii SP-6 6160958 YP_001790659.1 CDS Lcho_1627 NC_010524.1 1727760 1728575 R KEGG: mpt:Mpe_A3746 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(1727760..1728575) Leptothrix cholodnii SP-6 6160959 YP_001790660.1 CDS Lcho_1628 NC_010524.1 1728624 1731713 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1728624..1731713) Leptothrix cholodnii SP-6 6160960 YP_001790661.1 CDS Lcho_1629 NC_010524.1 1731849 1732328 D PFAM: regulatory protein AsnC/Lrp family; KEGG: mpt:Mpe_A3749 putative leucine-responsive regulatory protein; AsnC family transcriptional regulator 1731849..1732328 Leptothrix cholodnii SP-6 6160961 YP_001790662.1 CDS Lcho_1630 NC_010524.1 1732360 1733049 R PFAM: alanine racemase domain protein; KEGG: bmu:Bmul_2655 alanine racemase domain protein; alanine racemase domain-containing protein complement(1732360..1733049) Leptothrix cholodnii SP-6 6160962 YP_001790663.1 CDS Lcho_1631 NC_010524.1 1733111 1734154 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: mpt:Mpe_A3760 pili biogenesis ATPase; twitching motility protein 1733111..1734154 Leptothrix cholodnii SP-6 6163453 YP_001790664.1 CDS Lcho_1632 NC_010524.1 1734180 1735316 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: mpt:Mpe_A3762 pili biogenesis ATPase; twitching motility protein 1734180..1735316 Leptothrix cholodnii SP-6 6163454 YP_001790665.1 CDS Lcho_1633 NC_010524.1 1735321 1737231 D PFAM: ATP-binding region ATPase domain protein; KEGG: bbr:BB2739 probable two-component sensor histidine kinase; putative signal transduction histidine kinase 1735321..1737231 Leptothrix cholodnii SP-6 6163455 YP_001790666.1 CDS Lcho_1634 NC_010524.1 1737228 1737938 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mpt:Mpe_A3237 response regulator; two component LuxR family transcriptional regulator complement(1737228..1737938) Leptothrix cholodnii SP-6 6163456 YP_001790667.1 CDS Lcho_1635 NC_010524.1 1738128 1739582 D KEGG: stp:Strop_1435 hypothetical protein; hypothetical protein 1738128..1739582 Leptothrix cholodnii SP-6 6163457 YP_001790668.1 CDS Lcho_1636 NC_010524.1 1739656 1740549 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: aav:Aave_0633 3-hydroxyisobutyrate dehydrogenase; 6-phosphogluconate dehydrogenase 1739656..1740549 Leptothrix cholodnii SP-6 6163458 YP_001790669.1 CDS Lcho_1637 NC_010524.1 1740631 1741320 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ajs:Ajs_0416 transport-associated; transport-associated complement(1740631..1741320) Leptothrix cholodnii SP-6 6161284 YP_001790670.1 CDS Lcho_1638 NC_010524.1 1741317 1741910 R TIGRFAM: phosphoheptose isomerase; KEGG: mpt:Mpe_A3765 phosphoheptose isomerase; phosphoheptose isomerase complement(1741317..1741910) Leptothrix cholodnii SP-6 6161285 YP_001790671.1 CDS Lcho_1639 NC_010524.1 1741947 1742357 R PFAM: protein of unknown function UPF0102; KEGG: aav:Aave_0630 protein of unknown function UPF0102; hypothetical protein complement(1741947..1742357) Leptothrix cholodnii SP-6 6161286 YP_001790672.1 CDS Lcho_1640 NC_010524.1 1742374 1743438 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mpt:Mpe_A3767 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase 1742374..1743438 Leptothrix cholodnii SP-6 6161287 YP_001790673.1 CDS Lcho_1641 NC_010524.1 1743563 1745830 D KEGG: mpt:Mpe_A0661 signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1743563..1745830 Leptothrix cholodnii SP-6 6161288 YP_001790674.1 CDS Lcho_1642 NC_010524.1 1745840 1747870 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: mpt:Mpe_A2132 oligopeptidase A; oligopeptidase A complement(1745840..1747870) Leptothrix cholodnii SP-6 6161289 YP_001790675.1 CDS Lcho_1643 NC_010524.1 1747867 1748730 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1747867..1748730) Leptothrix cholodnii SP-6 6161676 YP_001790676.1 CDS Lcho_1644 NC_010524.1 1748835 1749458 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mpt:Mpe_A2130 response regulator protein; two component LuxR family transcriptional regulator complement(1748835..1749458) Leptothrix cholodnii SP-6 6161677 YP_001790677.1 CDS Lcho_1645 NC_010524.1 1749455 1751887 R KEGG: mpt:Mpe_A2129 putative two-component transmembrane sensor histidine kinase transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(1749455..1751887) Leptothrix cholodnii SP-6 6161678 YP_001790678.1 CDS aceE NC_010524.1 1752209 1754920 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1752209..1754920 Leptothrix cholodnii SP-6 6161679 YP_001790679.1 CDS Lcho_1647 NC_010524.1 1754941 1756605 D KEGG: mpt:Mpe_A2127 dihydrolipoamide S-succinyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 1754941..1756605 Leptothrix cholodnii SP-6 6161680 YP_001790680.1 CDS Lcho_1648 NC_010524.1 1756624 1758447 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ajs:Ajs_2096 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1756624..1758447 Leptothrix cholodnii SP-6 6161681 YP_001790681.1 CDS Lcho_1649 NC_010524.1 1758557 1759558 R PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A2919 beta-lactamase related protein; beta-lactamase domain-containing protein complement(1758557..1759558) Leptothrix cholodnii SP-6 6161509 YP_001790682.1 CDS Lcho_1650 NC_010524.1 1759677 1760312 D KEGG: mpt:Mpe_A2133 hypothetical protein; hypothetical protein 1759677..1760312 Leptothrix cholodnii SP-6 6161510 YP_001790683.1 CDS Lcho_1651 NC_010524.1 1760323 1761243 D PFAM: ApbE family lipoprotein; KEGG: abo:ABO_2002 thiamine biosynthesis lipoprotein, putative; ApbE family lipoprotein 1760323..1761243 Leptothrix cholodnii SP-6 6161511 YP_001790684.1 CDS Lcho_1652 NC_010524.1 1761387 1763612 R PFAM: protein of unknown function DUF839; KEGG: pol:Bpro_1725 twin-arginine translocation pathway signal; hypothetical protein complement(1761387..1763612) Leptothrix cholodnii SP-6 6161512 YP_001790685.1 CDS Lcho_1653 NC_010524.1 1763896 1764687 D PFAM: transcriptional regulator domain protein; KEGG: rme:Rmet_2180 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1763896..1764687 Leptothrix cholodnii SP-6 6161513 YP_001790686.1 CDS Lcho_1654 NC_010524.1 1764862 1765866 D TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dar:Daro_3562 phosphate binding protein; phosphate-binding protein 1764862..1765866 Leptothrix cholodnii SP-6 6161514 YP_001790687.1 CDS Lcho_1655 NC_010524.1 1765990 1766925 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: net:Neut_0238 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease 1765990..1766925 Leptothrix cholodnii SP-6 6161551 YP_001790688.1 CDS Lcho_1656 NC_010524.1 1766928 1767848 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA4829 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 1766928..1767848 Leptothrix cholodnii SP-6 6161552 YP_001790689.1 CDS Lcho_1657 NC_010524.1 1767910 1768704 D KEGG: mfa:Mfla_0792 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 1767910..1768704 Leptothrix cholodnii SP-6 6161553 YP_001790690.1 CDS Lcho_1658 NC_010524.1 1768748 1769455 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: mpt:Mpe_A1276 putative phosphate transport system protein; phosphate uptake regulator PhoU 1768748..1769455 Leptothrix cholodnii SP-6 6161554 YP_001790691.1 CDS Lcho_1659 NC_010524.1 1769489 1770226 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mpt:Mpe_A1277 phosphate regulon two-component system response regulator; two component transcriptional regulator 1769489..1770226 Leptothrix cholodnii SP-6 6161555 YP_001790692.1 CDS Lcho_1660 NC_010524.1 1770355 1770666 D hypothetical protein 1770355..1770666 Leptothrix cholodnii SP-6 6161556 YP_001790693.1 CDS Lcho_1661 NC_010524.1 1770679 1771323 D PFAM: nitroreductase; KEGG: rfr:Rfer_3637 nitroreductase; nitroreductase 1770679..1771323 Leptothrix cholodnii SP-6 6162134 YP_001790694.1 CDS Lcho_1662 NC_010524.1 1771420 1771659 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mpt:Mpe_A2463 putative cold shock protein; cold-shock DNA-binding domain-containing protein complement(1771420..1771659) Leptothrix cholodnii SP-6 6162135 YP_001790695.1 CDS Lcho_1663 NC_010524.1 1771850 1772197 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: mpt:Mpe_A2462 hypothetical protein; ATP-dependent Clp protease adaptor protein ClpS 1771850..1772197 Leptothrix cholodnii SP-6 6162136 YP_001790696.1 CDS Lcho_1664 NC_010524.1 1772194 1774494 D KEGG: mpt:Mpe_A2461 putative ATP-dependent clp protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 1772194..1774494 Leptothrix cholodnii SP-6 6162137 YP_001790697.1 CDS Lcho_1665 NC_010524.1 1774570 1775358 R PFAM: protein of unknown function DUF980; KEGG: mpt:Mpe_A2460 hypothetical protein; hypothetical protein complement(1774570..1775358) Leptothrix cholodnii SP-6 6162138 YP_001790698.1 CDS Lcho_1666 NC_010524.1 1775352 1776200 R TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; KEGG: ajs:Ajs_1619 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase complement(1775352..1776200) Leptothrix cholodnii SP-6 6162139 YP_001790699.1 CDS Lcho_1667 NC_010524.1 1776197 1776703 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mpt:Mpe_A2458 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1776197..1776703) Leptothrix cholodnii SP-6 6163732 YP_001790700.1 CDS Lcho_1668 NC_010524.1 1776706 1777275 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mpt:Mpe_A2457 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1776706..1777275) Leptothrix cholodnii SP-6 6163733 YP_001790701.1 CDS Lcho_1669 NC_010524.1 1777272 1779200 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rfr:Rfer_1347 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein complement(1777272..1779200) Leptothrix cholodnii SP-6 6163734 YP_001790702.1 CDS cysS NC_010524.1 1779428 1780801 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1779428..1780801 Leptothrix cholodnii SP-6 6163735 YP_001790703.1 CDS Lcho_1671 NC_010524.1 1780816 1781466 D PFAM: HhH-GPD family protein; KEGG: mpt:Mpe_A2455 DNA-3-methyladenine glycosylase; HhH-GPD family protein 1780816..1781466 Leptothrix cholodnii SP-6 6163736 YP_001790704.1 CDS Lcho_1672 NC_010524.1 1781517 1782485 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: mpt:Mpe_A2454 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 1781517..1782485 Leptothrix cholodnii SP-6 6163737 YP_001790705.1 CDS Lcho_1673 NC_010524.1 1782563 1783936 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: mpt:Mpe_A2453 putative cell cycle protein; tRNA(Ile)-lysidine synthetase 1782563..1783936 Leptothrix cholodnii SP-6 6164088 YP_001790706.1 CDS Lcho_1674 NC_010524.1 1784025 1785293 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1784025..1785293 Leptothrix cholodnii SP-6 6164089 YP_001790707.1 CDS Lcho_1675 NC_010524.1 1785560 1786984 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1785560..1786984 Leptothrix cholodnii SP-6 6164091 YP_001790708.1 CDS Lcho_1676 NC_010524.1 1786997 1787644 D KEGG: pol:Bpro_3609 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit 1786997..1787644 Leptothrix cholodnii SP-6 6164092 YP_001790709.1 CDS Lcho_1677 NC_010524.1 1787677 1788780 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1787677..1788780 Leptothrix cholodnii SP-6 6163944 YP_001790710.1 CDS Lcho_1678 NC_010524.1 1788876 1790003 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1788876..1790003 Leptothrix cholodnii SP-6 6163945 YP_001790711.1 CDS Lcho_1679 NC_010524.1 1790265 1792916 D KEGG: mpt:Mpe_A2160 putative transmembrane protein; putative transmembrane protein 1790265..1792916 Leptothrix cholodnii SP-6 6163946 YP_001790712.1 CDS truA NC_010524.1 1792948 1793736 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1792948..1793736 Leptothrix cholodnii SP-6 6163947 YP_001790713.1 CDS Lcho_1681 NC_010524.1 1793748 1794410 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: mpt:Mpe_A2158 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 1793748..1794410 Leptothrix cholodnii SP-6 6163948 YP_001790714.1 CDS Lcho_1682 NC_010524.1 1794428 1795714 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1794428..1795714 Leptothrix cholodnii SP-6 6163949 YP_001790715.1 CDS trpA NC_010524.1 1795711 1796526 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1795711..1796526 Leptothrix cholodnii SP-6 6162478 YP_001790716.1 CDS Lcho_1684 NC_010524.1 1796523 1797395 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: mpt:Mpe_A2155 acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1796523..1797395 Leptothrix cholodnii SP-6 6162479 YP_001790717.1 CDS Lcho_1685 NC_010524.1 1797487 1798800 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mpt:Mpe_A2154 bifunctional protein: folylpolyglutamate synthase and dihydrofolate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1797487..1798800 Leptothrix cholodnii SP-6 6162480 YP_001790718.1 CDS Lcho_1686 NC_010524.1 1798978 1799727 D PFAM: Sporulation domain protein; KEGG: mpt:Mpe_A2153 DedD protein; sporulation domain-containing protein 1798978..1799727 Leptothrix cholodnii SP-6 6162481 YP_001790719.1 CDS Lcho_1687 NC_010524.1 1799739 1800248 D PFAM: Colicin V production protein; KEGG: mpt:Mpe_A2152 colicin V production protein; colicin V production protein 1799739..1800248 Leptothrix cholodnii SP-6 6162482 YP_001790720.1 CDS Lcho_1688 NC_010524.1 1800338 1801855 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1800338..1801855 Leptothrix cholodnii SP-6 6162483 YP_001790721.1 CDS Lcho_1689 NC_010524.1 1801867 1803108 D KEGG: mpt:Mpe_A2150 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-succinylhomoserine sulfhydrylase 1801867..1803108 Leptothrix cholodnii SP-6 6161546 YP_001790722.1 CDS gltX NC_010524.1 1803113 1804519 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1803113..1804519 Leptothrix cholodnii SP-6 6161547 YP_001790723.1 CDS Lcho_1691 NC_010524.1 1805158 1806150 R KEGG: eba:ebA584 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase complement(1805158..1806150) Leptothrix cholodnii SP-6 6163705 YP_001790724.1 CDS Lcho_1692 NC_010524.1 1806315 1807382 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bte:BTH_I1556 maltose ABC transporter, ATP-binding protein, putative; ABC transporter-like protein complement(1806315..1807382) Leptothrix cholodnii SP-6 6163200 YP_001790725.1 CDS Lcho_1693 NC_010524.1 1807389 1808237 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_3692 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1807389..1808237) Leptothrix cholodnii SP-6 6163201 YP_001790726.1 CDS Lcho_1694 NC_010524.1 1808250 1809137 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1096 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1808250..1809137) Leptothrix cholodnii SP-6 6163202 YP_001790727.1 CDS Lcho_1695 NC_010524.1 1809315 1810577 R PFAM: extracellular solute-binding protein family 1; KEGG: pna:Pnap_3689 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1809315..1810577) Leptothrix cholodnii SP-6 6163203 YP_001790728.1 CDS Lcho_1696 NC_010524.1 1810717 1812237 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: rfr:Rfer_1092 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(1810717..1812237) Leptothrix cholodnii SP-6 6163204 YP_001790729.1 CDS Lcho_1697 NC_010524.1 1812271 1812969 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_0429 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator complement(1812271..1812969) Leptothrix cholodnii SP-6 6162764 YP_001790730.1 CDS Lcho_1698 NC_010524.1 1812987 1813784 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_3255 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1812987..1813784) Leptothrix cholodnii SP-6 6162765 YP_001790731.1 CDS Lcho_1699 NC_010524.1 1814127 1814678 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1814127..1814678 Leptothrix cholodnii SP-6 6162766 YP_001790732.1 CDS Lcho_1700 NC_010524.1 1814675 1816153 D KEGG: mpt:Mpe_A1922 putative N utilization substance transcription regulator protein; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; SMART: KH domain protein; NusA antitermination factor 1814675..1816153 Leptothrix cholodnii SP-6 6162767 YP_001790733.1 CDS infB NC_010524.1 1816206 1819181 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1816206..1819181 Leptothrix cholodnii SP-6 6162768 YP_001790734.1 CDS rbfA NC_010524.1 1819269 1819640 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1819269..1819640 Leptothrix cholodnii SP-6 6162769 YP_001790735.1 CDS Lcho_1703 NC_010524.1 1819668 1820687 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: mpt:Mpe_A1919 pseudouridylate synthase; tRNA pseudouridine synthase B 1819668..1820687 Leptothrix cholodnii SP-6 6162647 YP_001790736.1 CDS Lcho_1704 NC_010524.1 1820684 1822504 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: aav:Aave_3380 GTP-binding protein TypA; GTP-binding protein TypA 1820684..1822504 Leptothrix cholodnii SP-6 6162648 YP_001790737.1 CDS Lcho_1705 NC_010524.1 1822594 1823511 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A1917 hypothetical protein; hypothetical protein 1822594..1823511 Leptothrix cholodnii SP-6 6162649 YP_001790738.1 CDS Lcho_1706 NC_010524.1 1823584 1824297 R KEGG: sru:SRU_1591 hypothetical protein; hypothetical protein complement(1823584..1824297) Leptothrix cholodnii SP-6 6162650 YP_001790739.1 CDS Lcho_1707 NC_010524.1 1824399 1825538 R TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsh:Rsph17029_3291 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase family protein complement(1824399..1825538) Leptothrix cholodnii SP-6 6162651 YP_001790740.1 CDS Lcho_1708 NC_010524.1 1825535 1826389 R PFAM: protein of unknown function DUF547; KEGG: mmw:Mmwyl1_0177 protein of unknown function DUF547; hypothetical protein complement(1825535..1826389) Leptothrix cholodnii SP-6 6162652 YP_001790741.1 CDS Lcho_1709 NC_010524.1 1826386 1828548 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SNARE associated Golgi protein; KEGG: rfr:Rfer_1621 pyridine nucleotide-disulphide oxidoreductase dimerisation protein; hypothetical protein complement(1826386..1828548) Leptothrix cholodnii SP-6 6162234 YP_001790742.1 CDS Lcho_1710 NC_010524.1 1828548 1828646 R hypothetical protein complement(1828548..1828646) Leptothrix cholodnii SP-6 6162235 YP_001790743.1 CDS Lcho_1711 NC_010524.1 1828773 1829882 D PFAM: protein of unknown function DUF140; KEGG: sdn:Sden_0670 protein of unknown function DUF140; hypothetical protein 1828773..1829882 Leptothrix cholodnii SP-6 6162236 YP_001790744.1 CDS Lcho_1712 NC_010524.1 1829886 1830644 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2415 ABC transporter related; ABC transporter-like protein 1829886..1830644 Leptothrix cholodnii SP-6 6162237 YP_001790745.1 CDS Lcho_1713 NC_010524.1 1830641 1831711 D PFAM: Mammalian cell entry related domain protein; KEGG: sfu:Sfum_2416 mammalian cell entry related domain protein; hypothetical protein 1830641..1831711 Leptothrix cholodnii SP-6 6162238 YP_001790746.1 CDS Lcho_1714 NC_010524.1 1831769 1832467 D KEGG: sfu:Sfum_2417 protein of unknown function DUF330; hypothetical protein 1831769..1832467 Leptothrix cholodnii SP-6 6162239 YP_001790747.1 CDS Lcho_1715 NC_010524.1 1832510 1833442 R PFAM: Patatin; KEGG: rfr:Rfer_0361 patatin; patatin complement(1832510..1833442) Leptothrix cholodnii SP-6 6162809 YP_001790748.1 CDS Lcho_1716 NC_010524.1 1833439 1834074 R KEGG: hne:HNE_0662 YHS domain protein; hypothetical protein complement(1833439..1834074) Leptothrix cholodnii SP-6 6162810 YP_001790749.1 CDS Lcho_1717 NC_010524.1 1834071 1835477 R KEGG: aeh:Mlg_0907 hypothetical protein; hypothetical protein complement(1834071..1835477) Leptothrix cholodnii SP-6 6162811 YP_001790750.1 CDS Lcho_1718 NC_010524.1 1835474 1836142 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2748 methyltransferase type 11; type 11 methyltransferase complement(1835474..1836142) Leptothrix cholodnii SP-6 6162812 YP_001790751.1 CDS Lcho_1719 NC_010524.1 1836152 1836502 R PFAM: small multidrug resistance protein; KEGG: mac:MA1348 multidrug efflux pump; small multidrug resistance protein complement(1836152..1836502) Leptothrix cholodnii SP-6 6162813 YP_001790752.1 CDS Lcho_1720 NC_010524.1 1836524 1837360 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1618 phosphonate uptake transporter; phosphonate ABC transporter inner membrane subunit complement(1836524..1837360) Leptothrix cholodnii SP-6 6162814 YP_001790753.1 CDS Lcho_1721 NC_010524.1 1837377 1838225 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2238 phosphonate uptake transporter; binding-protein-dependent transport system inner membrane protein complement(1837377..1838225) Leptothrix cholodnii SP-6 6162496 YP_001790754.1 CDS Lcho_1722 NC_010524.1 1838222 1839061 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2237 ABC transporter related; ABC transporter-like protein complement(1838222..1839061) Leptothrix cholodnii SP-6 6162497 YP_001790755.1 CDS Lcho_1723 NC_010524.1 1839079 1839942 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: rfr:Rfer_1615 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(1839079..1839942) Leptothrix cholodnii SP-6 6162498 YP_001790756.1 CDS Lcho_1724 NC_010524.1 1840119 1841105 D KEGG: rme:Rmet_2566 putative uncharacterized conserved protein; hypothetical protein 1840119..1841105 Leptothrix cholodnii SP-6 6162499 YP_001790757.1 CDS Lcho_1725 NC_010524.1 1841115 1842344 R PFAM: protein of unknown function DUF323; KEGG: pol:Bpro_1756 protein of unknown function DUF323; hypothetical protein complement(1841115..1842344) Leptothrix cholodnii SP-6 6162500 YP_001790758.1 CDS Lcho_1726 NC_010524.1 1842363 1843364 D PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_1614 glycosyl transferase, group 1; group 1 glycosyl transferase 1842363..1843364 Leptothrix cholodnii SP-6 6162501 YP_001790759.1 CDS Lcho_1727 NC_010524.1 1843379 1844446 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1843379..1844446 Leptothrix cholodnii SP-6 6161967 YP_001790760.1 CDS Lcho_1728 NC_010524.1 1844471 1844692 R KEGG: dar:Daro_2471 hypothetical protein; hypothetical protein complement(1844471..1844692) Leptothrix cholodnii SP-6 6161968 YP_001790761.1 CDS Lcho_1729 NC_010524.1 1844917 1845945 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: mpt:Mpe_A1916 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 1844917..1845945 Leptothrix cholodnii SP-6 6161969 YP_001790762.1 CDS Lcho_1730 NC_010524.1 1846077 1847300 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pau:PA14_50060 hypothetical protein; diguanylate cyclase 1846077..1847300 Leptothrix cholodnii SP-6 6161970 YP_001790763.1 CDS Lcho_1731 NC_010524.1 1847304 1849217 D KEGG: nmu:Nmul_A0828 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1847304..1849217 Leptothrix cholodnii SP-6 6161971 YP_001790764.1 CDS Lcho_1732 NC_010524.1 1849199 1850122 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A1915 putative transmembrane protein; hypothetical protein complement(1849199..1850122) Leptothrix cholodnii SP-6 6161972 YP_001790765.1 CDS Lcho_1733 NC_010524.1 1850127 1850966 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1906 putrescine transport system permease protein; ornithine carbamoyltransferase complement(1850127..1850966) Leptothrix cholodnii SP-6 6161233 YP_001790766.1 CDS Lcho_1734 NC_010524.1 1850963 1851910 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1905 putrescine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1850963..1851910) Leptothrix cholodnii SP-6 6161234 YP_001790767.1 CDS Lcho_1735 NC_010524.1 1851921 1853027 R KEGG: mpt:Mpe_A1904 ATP-binding component of putrescine transport system; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(1851921..1853027) Leptothrix cholodnii SP-6 6161235 YP_001790768.1 CDS Lcho_1736 NC_010524.1 1853062 1854189 R PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_1698 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1853062..1854189) Leptothrix cholodnii SP-6 6161236 YP_001790769.1 CDS Lcho_1737 NC_010524.1 1854357 1855853 R PFAM: Aldehyde Dehydrogenase_; KEGG: mpt:Mpe_A1909 putative aldehyde dehydrogenase; aldehyde dehydrogenase complement(1854357..1855853) Leptothrix cholodnii SP-6 6161237 YP_001790770.1 CDS Lcho_1738 NC_010524.1 1855878 1857290 R PFAM: aminotransferase class-III; KEGG: mpt:Mpe_A1902 putative aminotransferase; putative aminotransferase complement(1855878..1857290) Leptothrix cholodnii SP-6 6161238 YP_001790771.1 CDS Lcho_1739 NC_010524.1 1857325 1858689 R PFAM: glutamine synthetase catalytic region; KEGG: mpt:Mpe_A1901 glutamate--ammonia ligase; glutamate--putrescine ligase complement(1857325..1858689) Leptothrix cholodnii SP-6 6163276 YP_001790772.1 CDS Lcho_1740 NC_010524.1 1858797 1859567 R PFAM: peptidase C26; KEGG: mpt:Mpe_A1900 glutamine amidotransferase-like protein; peptidase C26 complement(1858797..1859567) Leptothrix cholodnii SP-6 6163277 YP_001790773.1 CDS Lcho_1741 NC_010524.1 1859793 1861118 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1899 oxidoreductase; FAD dependent oxidoreductase complement(1859793..1861118) Leptothrix cholodnii SP-6 6163278 YP_001790774.1 CDS Lcho_1742 NC_010524.1 1861180 1862505 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(1861180..1862505) Leptothrix cholodnii SP-6 6163279 YP_001790775.1 CDS Lcho_1743 NC_010524.1 1862577 1863146 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_0363 hemerythrin HHE cation binding protein; hemerythrin HHE cation-binding domain-containing protein complement(1862577..1863146) Leptothrix cholodnii SP-6 6163280 YP_001790776.1 CDS Lcho_1744 NC_010524.1 1863526 1864842 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: ajs:Ajs_2401 isocitrate lyase; isocitrate lyase 1863526..1864842 Leptothrix cholodnii SP-6 6163281 YP_001790777.1 CDS Lcho_1745 NC_010524.1 1865126 1867039 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: dac:Daci_4616 threonyl-tRNA synthetase; threonyl-tRNA synthetase 1865126..1867039 Leptothrix cholodnii SP-6 6161337 YP_001790778.1 CDS Lcho_1746 NC_010524.1 1867267 1867674 D PFAM: initiation factor 3; KEGG: mpt:Mpe_A1887 putative translation initiation factor protein; initiation factor 3 1867267..1867674 Leptothrix cholodnii SP-6 6161338 YP_001790779.1 CDS rpmI NC_010524.1 1867799 1868002 D PFAM: ribosomal protein L35; KEGG: aav:Aave_2857 ribosomal protein L35; 50S ribosomal protein L35 1867799..1868002 Leptothrix cholodnii SP-6 6161339 YP_001790780.1 CDS rplT NC_010524.1 1868030 1868386 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1868030..1868386 Leptothrix cholodnii SP-6 6161340 YP_001790781.1 CDS Lcho_1749 NC_010524.1 1868520 1869563 D TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: ajs:Ajs_2396 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 1868520..1869563 Leptothrix cholodnii SP-6 6161341 YP_001790782.1 CDS pheT NC_010524.1 1869598 1872048 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1869598..1872048 Leptothrix cholodnii SP-6 6161342 YP_001790783.1 CDS Lcho_1751 NC_010524.1 1872093 1872434 D TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: mpt:Mpe_A1882 integration host factor alpha-subunit; integration host factor subunit alpha 1872093..1872434 Leptothrix cholodnii SP-6 6161290 YP_001790784.1 CDS Lcho_1752 NC_010524.1 1872469 1872954 D PFAM: regulatory protein MerR; KEGG: mpt:Mpe_A1881 putative transcriptional regulator; MerR family transcriptional regulator 1872469..1872954 Leptothrix cholodnii SP-6 6161291 YP_001790785.1 CDS Lcho_1753 NC_010524.1 1873575 1876619 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mfa:Mfla_1389 TPR repeat; hypothetical protein complement(1873575..1876619) Leptothrix cholodnii SP-6 6161294 YP_001790786.1 CDS Lcho_1754 NC_010524.1 1876862 1882291 D KEGG: mag:amb3790 large exoprotein involved in heme utilization or adhesion; large exoprotein involved in heme utilization or adhesion 1876862..1882291 Leptothrix cholodnii SP-6 6160319 YP_001790787.1 CDS Lcho_1755 NC_010524.1 1882406 1884349 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein; hypothetical protein 1882406..1884349 Leptothrix cholodnii SP-6 6160320 YP_001790788.1 CDS Lcho_1756 NC_010524.1 1884429 1885187 D KEGG: bxe:Bxe_A3797 hypothetical protein; hypothetical protein 1884429..1885187 Leptothrix cholodnii SP-6 6160321 YP_001790789.1 CDS Lcho_1757 NC_010524.1 1885272 1886084 D KEGG: rpc:RPC_4192 hypothetical protein; hypothetical protein 1885272..1886084 Leptothrix cholodnii SP-6 6160322 YP_001790790.1 CDS Lcho_1758 NC_010524.1 1886126 1888465 D KEGG: bam:Bamb_3149 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; type I secretion system ATPase 1886126..1888465 Leptothrix cholodnii SP-6 6160323 YP_001790791.1 CDS Lcho_1759 NC_010524.1 1888467 1890023 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_3148 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 1888467..1890023 Leptothrix cholodnii SP-6 6162056 YP_001790792.1 CDS Lcho_1760 NC_010524.1 1890024 1891385 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_3587 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein complement(1890024..1891385) Leptothrix cholodnii SP-6 6162057 YP_001790793.1 CDS Lcho_1761 NC_010524.1 1891389 1893110 R KEGG: noc:Noc_1818 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase complement(1891389..1893110) Leptothrix cholodnii SP-6 6162058 YP_001790794.1 CDS Lcho_1762 NC_010524.1 1893455 1894900 D KEGG: bam:Bamb_3147 outer membrane efflux protein; Outer membrane protein 1893455..1894900 Leptothrix cholodnii SP-6 6162059 YP_001790795.1 CDS Lcho_1763 NC_010524.1 1894920 1895945 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(1894920..1895945) Leptothrix cholodnii SP-6 6162060 YP_001790796.1 CDS pepN NC_010524.1 1895970 1898663 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: mpt:Mpe_A2774 alanyl aminopeptidase; aminopeptidase N complement(1895970..1898663) Leptothrix cholodnii SP-6 6162061 YP_001790797.1 CDS Lcho_1765 NC_010524.1 1898656 1899366 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rfr:Rfer_2702 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase complement(1898656..1899366) Leptothrix cholodnii SP-6 6163614 YP_001790798.1 CDS Lcho_1766 NC_010524.1 1899366 1900268 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mpt:Mpe_A2773 peptide chain release factor 2; peptide chain release factor 2 complement(1899366..1900268) Leptothrix cholodnii SP-6 6163615 YP_001790799.1 CDS Lcho_1767 NC_010524.1 1900623 1901642 R PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A2772 putative hydrolase protein; alpha/beta hydrolase fold protein complement(1900623..1901642) Leptothrix cholodnii SP-6 6163616 YP_001790800.1 CDS Lcho_1768 NC_010524.1 1901697 1903241 R PFAM: CheW domain protein; KEGG: neu:NE1397 CheW-like domain; CheW protein complement(1901697..1903241) Leptothrix cholodnii SP-6 6163617 YP_001790801.1 CDS Lcho_1769 NC_010524.1 1903261 1905339 R KEGG: pst:PSPTO_2441 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer complement(1903261..1905339) Leptothrix cholodnii SP-6 6163618 YP_001790802.1 CDS Lcho_1770 NC_010524.1 1905451 1906242 R KEGG: scl:sce1544 hypothetical protein; hypothetical protein complement(1905451..1906242) Leptothrix cholodnii SP-6 6163619 YP_001790803.1 CDS Lcho_1771 NC_010524.1 1906316 1907059 D PFAM: peptidase M50; KEGG: rso:RSc2524 hypothetical protein; peptidase M50 1906316..1907059 Leptothrix cholodnii SP-6 6162925 YP_001790804.1 CDS Lcho_1772 NC_010524.1 1907078 1907422 R KEGG: mpt:Mpe_A0031 hypothetical protein; hypothetical protein complement(1907078..1907422) Leptothrix cholodnii SP-6 6162926 YP_001790805.1 CDS Lcho_1773 NC_010524.1 1907433 1909514 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mpt:Mpe_A0261 hypothetical protein; peptidase S8/S53 subtilisin kexin sedolisin complement(1907433..1909514) Leptothrix cholodnii SP-6 6162927 YP_001790806.1 CDS Lcho_1774 NC_010524.1 1909672 1910835 R hypothetical protein complement(1909672..1910835) Leptothrix cholodnii SP-6 6162928 YP_001790807.1 CDS Lcho_1775 NC_010524.1 1911153 1912145 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: rfr:Rfer_3900 hypothetical protein; helix-turn-helix type 11 domain-containing protein 1911153..1912145 Leptothrix cholodnii SP-6 6162929 YP_001790808.1 CDS Lcho_1776 NC_010524.1 1912149 1916033 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: dac:Daci_0520 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 1912149..1916033 Leptothrix cholodnii SP-6 6162930 YP_001790809.1 CDS Lcho_1777 NC_010524.1 1916033 1919851 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: dac:Daci_0521 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 1916033..1919851 Leptothrix cholodnii SP-6 6162815 YP_001790810.1 CDS Lcho_1778 NC_010524.1 1919848 1922067 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: dac:Daci_0522 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 1919848..1922067 Leptothrix cholodnii SP-6 6162816 YP_001790811.1 CDS Lcho_1779 NC_010524.1 1922098 1923276 R PFAM: Extracellular ligand-binding receptor; KEGG: reh:H16_A1414 ABC-type transporter, periplasmic component; extracellular ligand-binding receptor complement(1922098..1923276) Leptothrix cholodnii SP-6 6162817 YP_001790812.1 CDS Lcho_1780 NC_010524.1 1923464 1925209 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pna:Pnap_1503 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1923464..1925209) Leptothrix cholodnii SP-6 6162818 YP_001790813.1 CDS Lcho_1781 NC_010524.1 1925206 1925799 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dac:Daci_2246 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(1925206..1925799) Leptothrix cholodnii SP-6 6162819 YP_001790814.1 CDS Lcho_1782 NC_010524.1 1925964 1926608 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mpt:Mpe_A1026 response regulator protein; two component LuxR family transcriptional regulator complement(1925964..1926608) Leptothrix cholodnii SP-6 6162820 YP_001790815.1 CDS Lcho_1783 NC_010524.1 1926586 1928091 R PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protein; KEGG: mpt:Mpe_A1027 putative transmembrane sensor histidine kinase transcription regulator protein; histidine kinase complement(1926586..1928091) Leptothrix cholodnii SP-6 6161477 YP_001790816.1 CDS Lcho_1784 NC_010524.1 1928107 1928457 R PFAM: protein of unknown function DUF442; KEGG: mpt:Mpe_A1235 hypothetical protein; hypothetical protein complement(1928107..1928457) Leptothrix cholodnii SP-6 6161478 YP_001790817.1 CDS Lcho_1785 NC_010524.1 1928503 1928949 R KEGG: mpt:Mpe_A1236 hypothetical protein; hypothetical protein complement(1928503..1928949) Leptothrix cholodnii SP-6 6161479 YP_001790818.1 CDS rpsU NC_010524.1 1929079 1929291 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1929079..1929291) Leptothrix cholodnii SP-6 6161480 YP_001790819.1 CDS Lcho_1787 NC_010524.1 1929502 1930722 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpt:Mpe_A1238 hypothetical protein; hypothetical protein complement(1929502..1930722) Leptothrix cholodnii SP-6 6161481 YP_001790820.1 CDS Lcho_1788 NC_010524.1 1930780 1931634 R KEGG: mpt:Mpe_A0481 periplasmic binding protein, putative; periplasmic-binding protein complement(1930780..1931634) Leptothrix cholodnii SP-6 6161482 YP_001790821.1 CDS Lcho_1789 NC_010524.1 1931702 1932181 R KEGG: mpt:Mpe_A0480 cytochrome c550; cytochrome c550 complement(1931702..1932181) Leptothrix cholodnii SP-6 6163288 YP_001790822.1 CDS Lcho_1790 NC_010524.1 1932491 1934752 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A2583 sigma-54 activated regulatory protein; Fis family GAF modulated sigma54 specific transcriptional regulator 1932491..1934752 Leptothrix cholodnii SP-6 6163289 YP_001790823.1 CDS Lcho_1791 NC_010524.1 1934719 1935864 R KEGG: pna:Pnap_0734 beta-lactamase domain protein; hypothetical protein complement(1934719..1935864) Leptothrix cholodnii SP-6 6163290 YP_001790824.1 CDS Lcho_1792 NC_010524.1 1936140 1936982 D KEGG: mpt:Mpe_A2585 pyrroloquinoline quinone biosynthesis protein PqqB; pyrroloquinoline quinone biosynthesis protein PqqB 1936140..1936982 Leptothrix cholodnii SP-6 6163291 YP_001790825.1 CDS Lcho_1793 NC_010524.1 1936979 1937698 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2589 ABC efflux transporter, ATP-binding protein; ABC transporter-like protein 1936979..1937698 Leptothrix cholodnii SP-6 6163292 YP_001790826.1 CDS Lcho_1794 NC_010524.1 1937757 1938773 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: vei:Veis_4977 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 1937757..1938773 Leptothrix cholodnii SP-6 6163293 YP_001790827.1 CDS Lcho_1795 NC_010524.1 1938773 1939948 D KEGG: pna:Pnap_0722 hypothetical protein; hypothetical protein 1938773..1939948 Leptothrix cholodnii SP-6 6160830 YP_001790828.1 CDS Lcho_1796 NC_010524.1 1939945 1940787 D PFAM: ABC-2 type transporter; KEGG: mpt:Mpe_A2590 efflux ABC transporter, permease protein; ABC-2 type transporter 1939945..1940787 Leptothrix cholodnii SP-6 6160831 YP_001790829.1 CDS Lcho_1797 NC_010524.1 1940759 1941517 D KEGG: mpt:Mpe_A2591 hypothetical protein; hypothetical protein 1940759..1941517 Leptothrix cholodnii SP-6 6160832 YP_001790830.1 CDS Lcho_1798 NC_010524.1 1941517 1942119 D KEGG: mpt:Mpe_A2592 hypothetical protein; hypothetical protein 1941517..1942119 Leptothrix cholodnii SP-6 6160833 YP_001790831.1 CDS Lcho_1799 NC_010524.1 1942161 1942661 D KEGG: mpt:Mpe_A2593 hypothetical protein; hypothetical protein 1942161..1942661 Leptothrix cholodnii SP-6 6160834 YP_001790832.1 CDS Lcho_1800 NC_010524.1 1942745 1943434 D KEGG: mpt:Mpe_A2594 hypothetical protein; hypothetical protein 1942745..1943434 Leptothrix cholodnii SP-6 6160835 YP_001790833.1 CDS Lcho_1801 NC_010524.1 1943425 1944420 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B1040 probable extra-cytoplasmic solute receptor; hypothetical protein 1943425..1944420 Leptothrix cholodnii SP-6 6163440 YP_001790834.1 CDS Lcho_1802 NC_010524.1 1944456 1945091 D KEGG: pna:Pnap_3155 hypothetical protein; hypothetical protein 1944456..1945091 Leptothrix cholodnii SP-6 6163441 YP_001790835.1 CDS Lcho_1803 NC_010524.1 1945120 1946004 R KEGG: reh:H16_B1261 hypothetical protein; hypothetical protein complement(1945120..1946004) Leptothrix cholodnii SP-6 6163442 YP_001790836.1 CDS Lcho_1804 NC_010524.1 1946133 1947338 D PFAM: integrase family protein; KEGG: dac:Daci_3780 integrase family protein; integrase family protein 1946133..1947338 Leptothrix cholodnii SP-6 6163443 YP_001790837.1 CDS Lcho_1805 NC_010524.1 1947393 1948061 R PFAM: SCP-like extracellular; KEGG: mpt:Mpe_A3565 hypothetical protein; hypothetical protein complement(1947393..1948061) Leptothrix cholodnii SP-6 6163444 YP_001790838.1 CDS Lcho_1806 NC_010524.1 1948427 1949269 D PFAM: protein of unknown function DUF519; KEGG: mpt:Mpe_A3717 hypothetical protein; hypothetical protein 1948427..1949269 Leptothrix cholodnii SP-6 6163445 YP_001790839.1 CDS Lcho_1807 NC_010524.1 1949798 1953442 R PFAM: WD-40 repeat protein; KEGG: amr:AM1_4989 WD-repeat protein; WD-40 repeat-containing protein complement(1949798..1953442) Leptothrix cholodnii SP-6 6162459 YP_001790840.1 CDS Lcho_1808 NC_010524.1 1953435 1954937 R SMART: TIR protein; KEGG: amr:AM1_4988 hypothetical protein; TIR protein complement(1953435..1954937) Leptothrix cholodnii SP-6 6162460 YP_001790841.1 CDS Lcho_1809 NC_010524.1 1955046 1955915 R PFAM: peptidase M48 Ste24p; KEGG: nmu:Nmul_A1887 peptidase M48, Ste24p; peptidase M48 Ste24p complement(1955046..1955915) Leptothrix cholodnii SP-6 6162461 YP_001790842.1 CDS Lcho_1810 NC_010524.1 1956097 1957194 D hypothetical protein 1956097..1957194 Leptothrix cholodnii SP-6 6162462 YP_001790843.1 CDS Lcho_1811 NC_010524.1 1957286 1959034 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A0473 quinoprotein ethanol dehydrogenase, putative; methanol/ethanol family PQQ-dependent dehydrogenase complement(1957286..1959034) Leptothrix cholodnii SP-6 6162463 YP_001790844.1 CDS Lcho_1812 NC_010524.1 1959267 1960559 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mpt:Mpe_A2523 molybdopterin biosynthesis protein; molybdenum cofactor synthesis domain-containing protein complement(1959267..1960559) Leptothrix cholodnii SP-6 6162464 YP_001790845.1 CDS Lcho_1813 NC_010524.1 1960734 1961450 D KEGG: mpt:Mpe_A2223 putative permease component of ABC transporter; ABC transporter permease 1960734..1961450 Leptothrix cholodnii SP-6 6161375 YP_001790846.1 CDS Lcho_1814 NC_010524.1 1961447 1962166 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2222 putative ATP-binding component of ABC transporter; ABC transporter-like protein 1961447..1962166 Leptothrix cholodnii SP-6 6161376 YP_001790847.1 CDS Lcho_1815 NC_010524.1 1962157 1963005 D KEGG: mpt:Mpe_A2221 hypothetical protein; hypothetical protein 1962157..1963005 Leptothrix cholodnii SP-6 6161377 YP_001790848.1 CDS Lcho_1816 NC_010524.1 1963237 1963710 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pna:Pnap_0048 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1963237..1963710 Leptothrix cholodnii SP-6 6161378 YP_001790849.1 CDS Lcho_1817 NC_010524.1 1963721 1965568 D PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: mpt:Mpe_A2581 tungsten-containing aldehyde:ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 1963721..1965568 Leptothrix cholodnii SP-6 6161379 YP_001790850.1 CDS Lcho_1818 NC_010524.1 1965646 1966926 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_0050 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1965646..1966926 Leptothrix cholodnii SP-6 6161380 YP_001790851.1 CDS Lcho_1819 NC_010524.1 1966979 1967233 D PFAM: thiamineS protein; KEGG: mpt:Mpe_A2579 hypothetical protein; sulfur transfer protein ThisS 1966979..1967233 Leptothrix cholodnii SP-6 6163853 YP_001790852.1 CDS Lcho_1820 NC_010524.1 1967234 1967536 D KEGG: mpt:Mpe_A2578 hypothetical protein; hypothetical protein 1967234..1967536 Leptothrix cholodnii SP-6 6163854 YP_001790853.1 CDS Lcho_1821 NC_010524.1 1967563 1967856 R PFAM: GYD family protein; KEGG: reh:H16_B1698 hypothetical protein; GYD family protein complement(1967563..1967856) Leptothrix cholodnii SP-6 6163855 YP_001790854.1 CDS Lcho_1822 NC_010524.1 1968060 1969220 D PFAM: regulatory protein LysR; KEGG: bbr:BB2126 hypothetical protein; molybdate metabolism transcriptional regulator 1968060..1969220 Leptothrix cholodnii SP-6 6163856 YP_001790855.1 CDS Lcho_1823 NC_010524.1 1969408 1972617 D KEGG: mpt:Mpe_A2664 signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1969408..1972617 Leptothrix cholodnii SP-6 6163857 YP_001790856.1 CDS Lcho_1824 NC_010524.1 1972646 1973674 R PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A0472 hydrolase, putative; beta-lactamase domain-containing protein complement(1972646..1973674) Leptothrix cholodnii SP-6 6163858 YP_001790857.1 CDS Lcho_1825 NC_010524.1 1973671 1974516 R KEGG: mpt:Mpe_A0471 hypothetical protein; hypothetical protein complement(1973671..1974516) Leptothrix cholodnii SP-6 6163932 YP_001790858.1 CDS Lcho_1826 NC_010524.1 1974550 1976721 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpt:Mpe_A1076 iron transporter; TonB-dependent receptor complement(1974550..1976721) Leptothrix cholodnii SP-6 6163933 YP_001790859.1 CDS Lcho_1827 NC_010524.1 1976959 1977798 R KEGG: rfr:Rfer_1303 hypothetical protein; hypothetical protein complement(1976959..1977798) Leptothrix cholodnii SP-6 6163934 YP_001790860.1 CDS Lcho_1828 NC_010524.1 1977795 1978256 R PFAM: regulatory protein MarR; KEGG: dac:Daci_3704 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1977795..1978256) Leptothrix cholodnii SP-6 6163935 YP_001790861.1 CDS Lcho_1829 NC_010524.1 1978282 1978707 R PFAM: BLUF domain protein; KEGG: mpt:Mpe_A1075 hypothetical protein; BLUF domain-containing protein complement(1978282..1978707) Leptothrix cholodnii SP-6 6163936 YP_001790862.1 CDS Lcho_1830 NC_010524.1 1978722 1979474 R PFAM: GTP cyclohydrolase I; KEGG: mpt:Mpe_A1074 GTP cyclohydrolase I; GTP cyclohydrolase I complement(1978722..1979474) Leptothrix cholodnii SP-6 6163937 YP_001790863.1 CDS Lcho_1831 NC_010524.1 1979968 1980891 D KEGG: amr:AM1_A0167 hypothetical protein; hypothetical protein 1979968..1980891 Leptothrix cholodnii SP-6 6161319 YP_001790864.1 CDS Lcho_1832 NC_010524.1 1981014 1982738 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3752 major facilitator superfamily MFS_1; general substrate transporter 1981014..1982738 Leptothrix cholodnii SP-6 6161320 YP_001790865.1 CDS Lcho_1833 NC_010524.1 1982912 1984177 D KEGG: mgm:Mmc1_0996 chromosome segregation ATPases-like protein; hypothetical protein 1982912..1984177 Leptothrix cholodnii SP-6 6161321 YP_001790866.1 CDS Lcho_1834 NC_010524.1 1984208 1984417 R PFAM: Heavy metal transport/detoxification protein; KEGG: mpt:Mpe_A1641 chaperonin; heavy metal transport/detoxification protein complement(1984208..1984417) Leptothrix cholodnii SP-6 6161322 YP_001790867.1 CDS Lcho_1835 NC_010524.1 1984590 1987004 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mpt:Mpe_A1640 P1 ATPase/HMA domain; heavy metal translocating P-type ATPase 1984590..1987004 Leptothrix cholodnii SP-6 6161323 YP_001790868.1 CDS Lcho_1836 NC_010524.1 1987009 1987497 R PFAM: thioesterase superfamily protein; KEGG: dar:Daro_0435 hypothetical protein; hypothetical protein complement(1987009..1987497) Leptothrix cholodnii SP-6 6161324 YP_001790869.1 CDS Lcho_1837 NC_010524.1 1987536 1988312 D PFAM: protein of unknown function DUF1624; KEGG: mpt:Mpe_A1762 conserved hypothetical protein MTH789; hypothetical protein 1987536..1988312 Leptothrix cholodnii SP-6 6160605 YP_001790870.1 CDS Lcho_1838 NC_010524.1 1988376 1989203 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mpt:Mpe_A1764 putative exported isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1988376..1989203) Leptothrix cholodnii SP-6 6160606 YP_001790871.1 CDS Lcho_1839 NC_010524.1 1989335 1989640 R PFAM: BolA family protein; KEGG: bur:Bcep18194_A5212 BolA-like protein; BolA family protein complement(1989335..1989640) Leptothrix cholodnii SP-6 6160607 YP_001790872.1 CDS Lcho_1840 NC_010524.1 1989637 1990275 R TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: mpt:Mpe_A1766 intracellular septation protein A; intracellular septation protein A complement(1989637..1990275) Leptothrix cholodnii SP-6 6160608 YP_001790873.1 CDS Lcho_1841 NC_010524.1 1990376 1990801 R TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: mpt:Mpe_A1767 methionine-S-oxide reductase; methionine-R-sulfoxide reductase complement(1990376..1990801) Leptothrix cholodnii SP-6 6160609 YP_001790874.1 CDS Lcho_1842 NC_010524.1 1990798 1992309 R PFAM: protein of unknown function UPF0061; KEGG: mpt:Mpe_A1768 hypothetical protein; hypothetical protein complement(1990798..1992309) Leptothrix cholodnii SP-6 6160610 YP_001790875.1 CDS Lcho_1843 NC_010524.1 1992437 1994107 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1992437..1994107 Leptothrix cholodnii SP-6 6161797 YP_001790876.1 CDS Lcho_1844 NC_010524.1 1994861 1995397 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: kpn:KPN_00261 hypothetical protein; HNH endonuclease 1994861..1995397 Leptothrix cholodnii SP-6 6161798 YP_001790877.1 CDS Lcho_1845 NC_010524.1 1996050 1996694 D hypothetical protein 1996050..1996694 Leptothrix cholodnii SP-6 6161799 YP_001790878.1 CDS Lcho_1846 NC_010524.1 1996897 1997424 D PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_3437 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1996897..1997424 Leptothrix cholodnii SP-6 6161800 YP_001790879.1 CDS Lcho_1847 NC_010524.1 1997711 1998319 D PFAM: protein of unknown function UPF0126; KEGG: sru:SRU_2560 UPF0126 domain protein; hypothetical protein 1997711..1998319 Leptothrix cholodnii SP-6 6161801 YP_001790880.1 CDS Lcho_1848 NC_010524.1 1998368 1999597 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rfr:Rfer_0850 lytic murein transglycosylase; lytic murein transglycosylase complement(1998368..1999597) Leptothrix cholodnii SP-6 6161802 YP_001790881.1 CDS Lcho_1849 NC_010524.1 1999650 2001086 D PFAM: peptidase U32; KEGG: pna:Pnap_3025 peptidase U32; peptidase U32 1999650..2001086 Leptothrix cholodnii SP-6 6163371 YP_001790882.1 CDS Lcho_1850 NC_010524.1 2001092 2002123 D PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A1771 putative amino acid transmembrane transmembrane protein; inner-membrane translocator 2001092..2002123 Leptothrix cholodnii SP-6 6163372 YP_001790883.1 CDS Lcho_1851 NC_010524.1 2002116 2003414 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_2576 inner-membrane translocator; inner-membrane translocator 2002116..2003414 Leptothrix cholodnii SP-6 6163373 YP_001790884.1 CDS Lcho_1852 NC_010524.1 2003411 2004172 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1773 putative amino-acid ATP-binding ABC transporter protein; ABC transporter-like protein 2003411..2004172 Leptothrix cholodnii SP-6 6163374 YP_001790885.1 CDS Lcho_1853 NC_010524.1 2004165 2004872 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1774 putative amino-acid ATP-binding ABC transporter protein; ABC transporter-like protein 2004165..2004872 Leptothrix cholodnii SP-6 6163375 YP_001790886.1 CDS Lcho_1854 NC_010524.1 2005049 2006032 D PFAM: transglutaminase domain protein; KEGG: dar:Daro_0510 transglutaminase-like; transglutaminase domain-containing protein 2005049..2006032 Leptothrix cholodnii SP-6 6163376 YP_001790887.1 CDS Lcho_1855 NC_010524.1 2006082 2006546 D PFAM: thioesterase superfamily protein; KEGG: mpt:Mpe_A1780 hypothetical protein; thioesterase superfamily protein 2006082..2006546 Leptothrix cholodnii SP-6 6163332 YP_001790888.1 CDS Lcho_1856 NC_010524.1 2006578 2007045 D PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_2870 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2006578..2007045 Leptothrix cholodnii SP-6 6163333 YP_001790889.1 CDS Lcho_1857 NC_010524.1 2007067 2008539 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bxe:Bxe_B1745 putative diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(2007067..2008539) Leptothrix cholodnii SP-6 6163334 YP_001790890.1 CDS Lcho_1858 NC_010524.1 2008665 2009888 R KEGG: dac:Daci_2891 hypothetical protein; hypothetical protein complement(2008665..2009888) Leptothrix cholodnii SP-6 6163335 YP_001790891.1 CDS Lcho_1859 NC_010524.1 2009930 2011126 R PFAM: Di-haem cytochrome c peroxidase; KEGG: dac:Daci_2892 cytochrome-c peroxidase; di-heme cytochrome c peroxidase complement(2009930..2011126) Leptothrix cholodnii SP-6 6163336 YP_001790892.1 CDS Lcho_1860 NC_010524.1 2011141 2012781 R KEGG: dac:Daci_2893 hypothetical protein; hypothetical protein complement(2011141..2012781) Leptothrix cholodnii SP-6 6163337 YP_001790893.1 CDS Lcho_1861 NC_010524.1 2012902 2013315 R KEGG: ade:Adeh_3688 response regulator receiver domain protein (CheY-like); response regulator receiver domain-containing protein complement(2012902..2013315) Leptothrix cholodnii SP-6 6162391 YP_001790894.1 CDS Lcho_1862 NC_010524.1 2013472 2015955 D PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: mpt:Mpe_A1792 putative transcription accessory protein; RNA-binding S1 domain-containing protein 2013472..2015955 Leptothrix cholodnii SP-6 6162392 YP_001790895.1 CDS Lcho_1863 NC_010524.1 2015966 2016592 R KEGG: pna:Pnap_3051 hypothetical protein; hypothetical protein complement(2015966..2016592) Leptothrix cholodnii SP-6 6162393 YP_001790896.1 CDS Lcho_1864 NC_010524.1 2016874 2017572 R KEGG: mpt:Mpe_A2501 PAP2 superfamily protein; PAP2 superfamily protein complement(2016874..2017572) Leptothrix cholodnii SP-6 6162394 YP_001790897.1 CDS Lcho_1865 NC_010524.1 2017569 2019296 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: har:HEAR0049 putative sulfatase membrane protein; sulfatase complement(2017569..2019296) Leptothrix cholodnii SP-6 6162395 YP_001790898.1 CDS Lcho_1866 NC_010524.1 2019392 2020051 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_3399 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2019392..2020051 Leptothrix cholodnii SP-6 6162396 YP_001790899.1 CDS Lcho_1867 NC_010524.1 2020087 2021373 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A3149 sensor histidine kinase; histidine kinase 2020087..2021373 Leptothrix cholodnii SP-6 6162202 YP_001790900.1 CDS Lcho_1868 NC_010524.1 2021512 2022396 D KEGG: art:Arth_1252 hypothetical protein; hypothetical protein 2021512..2022396 Leptothrix cholodnii SP-6 6162203 YP_001790901.1 CDS Lcho_1869 NC_010524.1 2022393 2022890 D KEGG: art:Arth_1251 hypothetical protein; hypothetical protein 2022393..2022890 Leptothrix cholodnii SP-6 6162204 YP_001790902.1 CDS Lcho_1870 NC_010524.1 2022892 2023272 D hypothetical protein 2022892..2023272 Leptothrix cholodnii SP-6 6162205 YP_001790903.1 CDS Lcho_1871 NC_010524.1 2023277 2024776 D PFAM: Patatin; KEGG: art:Arth_1250 patatin; patatin 2023277..2024776 Leptothrix cholodnii SP-6 6162206 YP_001790904.1 CDS Lcho_1872 NC_010524.1 2024827 2025792 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mpt:Mpe_A1799 putative esterase/lipase; alpha/beta hydrolase domain-containing protein 2024827..2025792 Leptothrix cholodnii SP-6 6162207 YP_001790905.1 CDS Lcho_1873 NC_010524.1 2025789 2026649 D PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: mpt:Mpe_A1800 thioesterase-like protein; thioesterase superfamily protein 2025789..2026649 Leptothrix cholodnii SP-6 6160373 YP_001790906.1 CDS Lcho_1874 NC_010524.1 2026661 2027620 R PFAM: protein of unknown function DUF833; KEGG: mpt:Mpe_A1864 hypothetical protein; hypothetical protein complement(2026661..2027620) Leptothrix cholodnii SP-6 6160374 YP_001790907.1 CDS Lcho_1875 NC_010524.1 2027625 2027975 R hypothetical protein complement(2027625..2027975) Leptothrix cholodnii SP-6 6160375 YP_001790908.1 CDS Lcho_1876 NC_010524.1 2027972 2028931 R TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: mpt:Mpe_A1862 hypothetical protein; folate-binding protein YgfZ complement(2027972..2028931) Leptothrix cholodnii SP-6 6160376 YP_001790909.1 CDS Lcho_1877 NC_010524.1 2029109 2030095 D PFAM: aminodeoxychorismate lyase; KEGG: mpt:Mpe_A1861 hypothetical protein; aminodeoxychorismate lyase 2029109..2030095 Leptothrix cholodnii SP-6 6160377 YP_001790910.1 CDS Lcho_1878 NC_010524.1 2030139 2030819 D PFAM: thymidylate kinase; KEGG: mpt:Mpe_A1860 thymidylate kinase; dTMP kinase 2030139..2030819 Leptothrix cholodnii SP-6 6160378 YP_001790911.1 CDS Lcho_1879 NC_010524.1 2030813 2031895 D TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: mpt:Mpe_A1859 DNA-directed DNA polymerase; DNA polymerase III subunit delta' 2030813..2031895 Leptothrix cholodnii SP-6 6160289 YP_001790912.1 CDS Lcho_1880 NC_010524.1 2031892 2032272 D PFAM: type IV pilus assembly PilZ; KEGG: mpt:Mpe_A1858 type IV pilus assembly protein; type IV pilus assembly PilZ 2031892..2032272 Leptothrix cholodnii SP-6 6160290 YP_001790913.1 CDS Lcho_1881 NC_010524.1 2032379 2033155 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: mpt:Mpe_A1857 putative deoxyribonuclease; TatD family hydrolase 2032379..2033155 Leptothrix cholodnii SP-6 6160291 YP_001790914.1 CDS Lcho_1882 NC_010524.1 2033296 2033526 D KEGG: rfr:Rfer_3578 hypothetical protein; hypothetical protein 2033296..2033526 Leptothrix cholodnii SP-6 6160292 YP_001790915.1 CDS Lcho_1883 NC_010524.1 2033543 2034079 D KEGG: mpt:Mpe_A1813 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 2033543..2034079 Leptothrix cholodnii SP-6 6160293 YP_001790916.1 CDS Lcho_1884 NC_010524.1 2034084 2035001 R PFAM: band 7 protein; KEGG: mpt:Mpe_A1927 putative membrane protein with protease subunit; hypothetical protein complement(2034084..2035001) Leptothrix cholodnii SP-6 6160294 YP_001790917.1 CDS Lcho_1885 NC_010524.1 2035048 2035479 R PFAM: protein of unknown function DUF107; KEGG: mpt:Mpe_A1926 hypothetical protein; hypothetical protein complement(2035048..2035479) Leptothrix cholodnii SP-6 6159912 YP_001790918.1 CDS Lcho_1886 NC_010524.1 2035612 2037867 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: mpt:Mpe_A1925 lysine decarboxylase; lysine decarboxylase 2035612..2037867 Leptothrix cholodnii SP-6 6159913 YP_001790919.1 CDS Lcho_1887 NC_010524.1 2038039 2040315 D KEGG: pna:Pnap_1103 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 2038039..2040315 Leptothrix cholodnii SP-6 6159914 YP_001790920.1 CDS Lcho_1888 NC_010524.1 2040417 2042051 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2040417..2042051 Leptothrix cholodnii SP-6 6159915 YP_001790921.1 CDS Lcho_1889 NC_010524.1 2042098 2043366 D TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pna:Pnap_1106 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 2042098..2043366 Leptothrix cholodnii SP-6 6159916 YP_001790922.1 CDS glgA NC_010524.1 2043435 2044898 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2043435..2044898 Leptothrix cholodnii SP-6 6159917 YP_001790923.1 CDS Lcho_1891 NC_010524.1 2044959 2047487 D KEGG: bxe:Bxe_B2201 phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 2044959..2047487 Leptothrix cholodnii SP-6 6160033 YP_001790924.1 CDS Lcho_1892 NC_010524.1 2047534 2049000 R KEGG: mpt:Mpe_A3512 uncharacterized protein containing a von Willebrand factor type A (vWA) domain; von Willebrand factor type A (vWA) domain-containing protein complement(2047534..2049000) Leptothrix cholodnii SP-6 6160034 YP_001790925.1 CDS Lcho_1893 NC_010524.1 2049015 2050409 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A3511 MoxR-like ATPase; ATPase complement(2049015..2050409) Leptothrix cholodnii SP-6 6160035 YP_001790926.1 CDS Lcho_1894 NC_010524.1 2050472 2051887 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1573 putative oxidative stress resistance two-component transmembrane sensor histidine kinase transcription regulator protein; histidine kinase complement(2050472..2051887) Leptothrix cholodnii SP-6 6160036 YP_001790927.1 CDS ompR NC_010524.1 2051907 2052641 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(2051907..2052641) Leptothrix cholodnii SP-6 6160037 YP_001790928.1 CDS Lcho_1896 NC_010524.1 2052896 2053570 D PFAM: protein of unknown function DUF541; KEGG: mpt:Mpe_A1575 hypothetical protein; hypothetical protein 2052896..2053570 Leptothrix cholodnii SP-6 6160038 YP_001790929.1 CDS Lcho_1897 NC_010524.1 2053592 2054362 R TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_2069 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase complement(2053592..2054362) Leptothrix cholodnii SP-6 6159831 YP_001790930.1 CDS Lcho_1898 NC_010524.1 2054436 2055338 D PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A1577 putative hydrolase protein; alpha/beta hydrolase fold protein 2054436..2055338 Leptothrix cholodnii SP-6 6159832 YP_001790931.1 CDS Lcho_1899 NC_010524.1 2055348 2057624 D KEGG: mpt:Mpe_A1578 GTP diphosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 2055348..2057624 Leptothrix cholodnii SP-6 6159833 YP_001790932.1 CDS Lcho_1900 NC_010524.1 2057905 2058492 D TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: reu:Reut_A1350 polyhydroxyalkanoate synthesis repressor PhaR; polyhydroxyalkonate synthesis repressor PhaR 2057905..2058492 Leptothrix cholodnii SP-6 6159835 YP_001790933.1 CDS Lcho_1901 NC_010524.1 2058549 2059193 R PFAM: lipolytic protein G-D-S-L family; KEGG: ajs:Ajs_2271 lipolytic enzyme, G-D-S-L family; GDSL family lipase complement(2058549..2059193) Leptothrix cholodnii SP-6 6159801 YP_001790934.1 CDS Lcho_1902 NC_010524.1 2059237 2059938 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1816 ABC transporter, ATP-binding protein; ABC transporter-like protein 2059237..2059938 Leptothrix cholodnii SP-6 6159802 YP_001790935.1 CDS Lcho_1903 NC_010524.1 2059959 2060693 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ajs:Ajs_2268 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase 2059959..2060693 Leptothrix cholodnii SP-6 6159803 YP_001790936.1 CDS Lcho_1904 NC_010524.1 2060690 2061466 D PFAM: Silent information regulator protein Sir2; KEGG: ajs:Ajs_2262 silent information regulator protein Sir2; silent information regulator protein Sir2 2060690..2061466 Leptothrix cholodnii SP-6 6159804 YP_001790937.1 CDS Lcho_1905 NC_010524.1 2061528 2062154 D TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: mpt:Mpe_A1818 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 2061528..2062154 Leptothrix cholodnii SP-6 6159805 YP_001790938.1 CDS Lcho_1906 NC_010524.1 2062185 2062559 D KEGG: rfr:Rfer_2233 hypothetical protein; hypothetical protein 2062185..2062559 Leptothrix cholodnii SP-6 6159806 YP_001790939.1 CDS Lcho_1907 NC_010524.1 2062581 2063615 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mpt:Mpe_A1820 putative D-3-phosphoglycerate dehydrogenase oxidoreductase protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(2062581..2063615) Leptothrix cholodnii SP-6 6160147 YP_001790940.1 CDS Lcho_1908 NC_010524.1 2063672 2066128 D PFAM: peptidase S45 penicillin amidase; KEGG: mpt:Mpe_A1822 penicillin amidase; peptidase S45 penicillin amidase 2063672..2066128 Leptothrix cholodnii SP-6 6160148 YP_001790941.1 CDS Lcho_1909 NC_010524.1 2066357 2067226 D KEGG: pau:PA14_58700 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 2066357..2067226 Leptothrix cholodnii SP-6 6160149 YP_001790942.1 CDS Lcho_1910 NC_010524.1 2067346 2067777 D PFAM: type IV pilus assembly PilZ; KEGG: mpt:Mpe_B0017 hypothetical protein; type IV pilus assembly PilZ 2067346..2067777 Leptothrix cholodnii SP-6 6160150 YP_001790943.1 CDS Lcho_1911 NC_010524.1 2068080 2068715 D KEGG: mpt:Mpe_A2850 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 2068080..2068715 Leptothrix cholodnii SP-6 6160152 YP_001790944.1 CDS Lcho_1912 NC_010524.1 2068723 2069535 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(2068723..2069535) Leptothrix cholodnii SP-6 6160307 YP_001790945.1 CDS Lcho_1913 NC_010524.1 2069677 2070927 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mpt:Mpe_A2033 putative arginine/proline rich protein; RNA-binding S4 domain-containing protein 2069677..2070927 Leptothrix cholodnii SP-6 6160308 YP_001790946.1 CDS Lcho_1914 NC_010524.1 2071017 2071655 D PFAM: regulatory protein TetR; KEGG: hau:Haur_2521 transcriptional regulator, TetR family; TetR family transcriptional regulator 2071017..2071655 Leptothrix cholodnii SP-6 6160309 YP_001790947.1 CDS Lcho_1915 NC_010524.1 2071687 2075769 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2071687..2075769) Leptothrix cholodnii SP-6 6160310 YP_001790948.1 CDS Lcho_1916 NC_010524.1 2075827 2076942 R PFAM: FAD dependent oxidoreductase; KEGG: rme:Rmet_1140 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2075827..2076942) Leptothrix cholodnii SP-6 6160311 YP_001790949.1 CDS Lcho_1917 NC_010524.1 2077034 2077837 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: mpt:Mpe_A1760 methionine aminopeptidase; methionine aminopeptidase 2077034..2077837 Leptothrix cholodnii SP-6 6159874 YP_001790950.1 CDS Lcho_1918 NC_010524.1 2077934 2080588 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 2077934..2080588 Leptothrix cholodnii SP-6 6159875 YP_001790951.1 CDS rumA NC_010524.1 2080564 2082060 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(2080564..2082060) Leptothrix cholodnii SP-6 6159876 YP_001790952.1 CDS Lcho_1920 NC_010524.1 2082116 2083063 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: mpt:Mpe_A1254 subfamily M23B unassigned peptidase; peptidase M23B complement(2082116..2083063) Leptothrix cholodnii SP-6 6159877 YP_001790953.1 CDS Lcho_1921 NC_010524.1 2083125 2083976 R KEGG: mpt:Mpe_A1253 L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(2083125..2083976) Leptothrix cholodnii SP-6 6159878 YP_001790954.1 CDS surE NC_010524.1 2083973 2084734 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2083973..2084734) Leptothrix cholodnii SP-6 6159879 YP_001790955.1 CDS Lcho_1923 NC_010524.1 2084994 2085740 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mpt:Mpe_A1249 response regulator; two component LuxR family transcriptional regulator 2084994..2085740 Leptothrix cholodnii SP-6 6159763 YP_001790956.1 CDS Lcho_1924 NC_010524.1 2085968 2086396 R PFAM: UspA domain protein; KEGG: pna:Pnap_0391 UspA domain protein; UspA domain-containing protein complement(2085968..2086396) Leptothrix cholodnii SP-6 6159764 YP_001790957.1 CDS Lcho_1925 NC_010524.1 2086624 2088183 D TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_3399 glutamate--cysteine ligase, monofunctional; glutamate--cysteine ligase 2086624..2088183 Leptothrix cholodnii SP-6 6159765 YP_001790958.1 CDS Lcho_1926 NC_010524.1 2088190 2088957 R PFAM: ABC-2 type transporter; KEGG: mpt:Mpe_A0977 ABC transporter permease protein; ABC-2 type transporter complement(2088190..2088957) Leptothrix cholodnii SP-6 6159766 YP_001790959.1 CDS Lcho_1927 NC_010524.1 2088954 2089880 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0978 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2088954..2089880) Leptothrix cholodnii SP-6 6159767 YP_001790960.1 CDS Lcho_1928 NC_010524.1 2090156 2092069 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mpt:Mpe_A1955 putative peptidyl-prolyl cis-trans isomerase transmembrane protein; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2090156..2092069) Leptothrix cholodnii SP-6 6160197 YP_001790961.1 CDS Lcho_1929 NC_010524.1 2092325 2092675 R PFAM: histone family protein DNA-binding protein; KEGG: mpt:Mpe_A1956 DNA-binding protein Hu-beta; histone family protein DNA-binding protein complement(2092325..2092675) Leptothrix cholodnii SP-6 6160199 YP_001790962.1 CDS Lcho_1930 NC_010524.1 2092841 2093794 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A1957 putative transmembrane protein; hypothetical protein complement(2092841..2093794) Leptothrix cholodnii SP-6 6160200 YP_001790963.1 CDS Lcho_1931 NC_010524.1 2093798 2094364 R TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mpt:Mpe_A1958 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2093798..2094364) Leptothrix cholodnii SP-6 6160436 YP_001790964.1 CDS uvrC NC_010524.1 2094439 2096517 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2094439..2096517) Leptothrix cholodnii SP-6 6160437 YP_001790965.1 CDS Lcho_1933 NC_010524.1 2096550 2097767 D KEGG: mpt:Mpe_A1961 hypothetical protein; hypothetical protein 2096550..2097767 Leptothrix cholodnii SP-6 6160438 YP_001790966.1 CDS Lcho_1934 NC_010524.1 2097917 2098471 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2097917..2098471 Leptothrix cholodnii SP-6 6160439 YP_001790967.1 CDS Lcho_1935 NC_010524.1 2098568 2099281 R KEGG: mpt:Mpe_A1758 hypothetical protein; hypothetical protein complement(2098568..2099281) Leptothrix cholodnii SP-6 6160440 YP_001790968.1 CDS Lcho_1936 NC_010524.1 2099299 2099727 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mms:mma_0247 biopolymer transport protein ExbD; biopolymer transport protein ExbD/TolR complement(2099299..2099727) Leptothrix cholodnii SP-6 6160441 YP_001790969.1 CDS Lcho_1937 NC_010524.1 2099740 2100159 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: azo:azo0233 putative biopolymer transport protein ExbD; biopolymer transport protein ExbD/TolR complement(2099740..2100159) Leptothrix cholodnii SP-6 6163691 YP_001790970.1 CDS Lcho_1938 NC_010524.1 2100181 2100972 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein; MotA/TolQ/ExbB proton channel complement(2100181..2100972) Leptothrix cholodnii SP-6 6163692 YP_001790971.1 CDS Lcho_1939 NC_010524.1 2101058 2103622 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_37730 putative TonB dependent receptor; TonB-dependent receptor complement(2101058..2103622) Leptothrix cholodnii SP-6 6163693 YP_001790972.1 CDS Lcho_1940 NC_010524.1 2104436 2105224 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: mpt:Mpe_A1349 hypothetical protein; UBA/THIF-type NAD/FAD-binding protein complement(2104436..2105224) Leptothrix cholodnii SP-6 6162546 YP_001790973.1 CDS Lcho_1941 NC_010524.1 2105221 2106336 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pol:Bpro_1987 protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(2105221..2106336) Leptothrix cholodnii SP-6 6162547 YP_001790974.1 CDS Lcho_1942 NC_010524.1 2106388 2107239 R TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: mpt:Mpe_A1348 putative transmembrane protein; tol-pal system protein YbgF complement(2106388..2107239) Leptothrix cholodnii SP-6 6162548 YP_001790975.1 CDS Lcho_1943 NC_010524.1 2107239 2107829 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: mpt:Mpe_A1347 putative peptidoglycan-associated lipoprotein precursor; peptidoglycan-associated lipoprotein complement(2107239..2107829) Leptothrix cholodnii SP-6 6161349 YP_001790976.1 CDS tolB NC_010524.1 2107889 2109172 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(2107889..2109172) Leptothrix cholodnii SP-6 6161350 YP_001790977.1 CDS Lcho_1945 NC_010524.1 2109422 2110012 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: rso:RSc2199 hypothetical protein; peroxidase-like protein 2109422..2110012 Leptothrix cholodnii SP-6 6161351 YP_001790978.1 CDS Lcho_1946 NC_010524.1 2110044 2111525 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: mpt:Mpe_A1344 putative ribonuclease G; ribonuclease complement(2110044..2111525) Leptothrix cholodnii SP-6 6161352 YP_001790979.1 CDS Lcho_1947 NC_010524.1 2111533 2112141 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: rfr:Rfer_2081 Maf-like protein; maf protein complement(2111533..2112141) Leptothrix cholodnii SP-6 6161353 YP_001790980.1 CDS Lcho_1948 NC_010524.1 2112164 2112634 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(2112164..2112634) Leptothrix cholodnii SP-6 6161354 YP_001790981.1 CDS Lcho_1949 NC_010524.1 2112655 2113407 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: ajs:Ajs_1901 iojap-like protein; iojap family protein complement(2112655..2113407) Leptothrix cholodnii SP-6 6162031 YP_001790982.1 CDS Lcho_1950 NC_010524.1 2113479 2114117 R KEGG: mpt:Mpe_A1340 nicotinate-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(2113479..2114117) Leptothrix cholodnii SP-6 6162032 YP_001790983.1 CDS Lcho_1951 NC_010524.1 2114110 2115057 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(2114110..2115057) Leptothrix cholodnii SP-6 6162033 YP_001790984.1 CDS Lcho_1952 NC_010524.1 2115073 2116356 R KEGG: mpt:Mpe_A1338 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine--glycine ligase complement(2115073..2116356) Leptothrix cholodnii SP-6 6162034 YP_001790985.1 CDS Lcho_1953 NC_010524.1 2116417 2117142 R PFAM: protein of unknown function DUF28; KEGG: aav:Aave_3203 protein of unknown function DUF28; hypothetical protein complement(2116417..2117142) Leptothrix cholodnii SP-6 6162035 YP_001790986.1 CDS Lcho_1954 NC_010524.1 2117347 2118924 D PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: mpt:Mpe_A1336 hypothetical protein; hypothetical protein 2117347..2118924 Leptothrix cholodnii SP-6 6162036 YP_001790987.1 CDS Lcho_1955 NC_010524.1 2118936 2119424 D PFAM: protein of unknown function DUF1499; KEGG: ana:all1003 hypothetical protein; hypothetical protein 2118936..2119424 Leptothrix cholodnii SP-6 6161744 YP_001790988.1 CDS Lcho_1956 NC_010524.1 2119544 2121403 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2119544..2121403 Leptothrix cholodnii SP-6 6161745 YP_001790989.1 CDS Lcho_1957 NC_010524.1 2121425 2122066 R hypothetical protein complement(2121425..2122066) Leptothrix cholodnii SP-6 6161746 YP_001790990.1 CDS Lcho_1958 NC_010524.1 2122248 2122706 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: mpt:Mpe_A0029 PhnB protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2122248..2122706) Leptothrix cholodnii SP-6 6161747 YP_001790991.1 CDS Lcho_1959 NC_010524.1 2123271 2124302 R KEGG: plu:plu0597 hypothetical protein; hypothetical protein complement(2123271..2124302) Leptothrix cholodnii SP-6 6161748 YP_001790992.1 CDS Lcho_1960 NC_010524.1 2124287 2125855 R KEGG: plu:plu0598 hypothetical protein; hypothetical protein complement(2124287..2125855) Leptothrix cholodnii SP-6 6161749 YP_001790993.1 CDS Lcho_1961 NC_010524.1 2126197 2127084 R PFAM: Integrase catalytic region; KEGG: pol:Bpro_4706 integrase, catalytic region; integrase catalytic subunit complement(2126197..2127084) Leptothrix cholodnii SP-6 6163828 YP_001790994.1 CDS Lcho_1962 NC_010524.1 2127081 2127380 R PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_4705 hypothetical protein; transposase IS3/IS911 family protein complement(2127081..2127380) Leptothrix cholodnii SP-6 6163829 YP_001790995.1 CDS Lcho_1963 NC_010524.1 2127516 2130053 D hypothetical protein 2127516..2130053 Leptothrix cholodnii SP-6 6163830 YP_001790996.1 CDS Lcho_1964 NC_010524.1 2130734 2131102 R PFAM: protein of unknown function DUF1428; KEGG: xcb:XC_3061 hypothetical protein; hypothetical protein complement(2130734..2131102) Leptothrix cholodnii SP-6 6163831 YP_001790997.1 CDS Lcho_1965 NC_010524.1 2131379 2132011 R KEGG: xom:XOO_0504 hypothetical protein; hypothetical protein complement(2131379..2132011) Leptothrix cholodnii SP-6 6163832 YP_001790998.1 CDS Lcho_1966 NC_010524.1 2132014 2133288 R KEGG: xom:XOO_0505 hypothetical protein; hypothetical protein complement(2132014..2133288) Leptothrix cholodnii SP-6 6163833 YP_001790999.1 CDS Lcho_1967 NC_010524.1 2133285 2133392 R hypothetical protein complement(2133285..2133392) Leptothrix cholodnii SP-6 6164105 YP_001791000.1 CDS Lcho_1968 NC_010524.1 2133700 2136777 R PFAM: acriflavin resistance protein; KEGG: pna:Pnap_1682 acriflavin resistance protein; acriflavin resistance protein complement(2133700..2136777) Leptothrix cholodnii SP-6 6164106 YP_001791001.1 CDS Lcho_1969 NC_010524.1 2136794 2138050 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2282 secretion protein HlyD; RND family efflux transporter MFP subunit complement(2136794..2138050) Leptothrix cholodnii SP-6 6164107 YP_001791002.1 CDS Lcho_1970 NC_010524.1 2138159 2138641 R PFAM: ribonuclease H; KEGG: rso:RSc1513 ribonuclease H; ribonuclease H complement(2138159..2138641) Leptothrix cholodnii SP-6 6164108 YP_001791003.1 CDS Lcho_1971 NC_010524.1 2138707 2139528 R KEGG: pol:Bpro_2280 hypothetical protein; hypothetical protein complement(2138707..2139528) Leptothrix cholodnii SP-6 6164109 YP_001791004.1 CDS Lcho_1972 NC_010524.1 2139572 2140309 D KEGG: vei:Veis_0591 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 2139572..2140309 Leptothrix cholodnii SP-6 6164110 YP_001791005.1 CDS Lcho_1973 NC_010524.1 2140306 2142042 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A2530 membrane-bound lytic murein transglycosylase D, putative; lytic transglycosylase catalytic subunit 2140306..2142042 Leptothrix cholodnii SP-6 6160736 YP_001791006.1 CDS recR NC_010524.1 2142097 2142693 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(2142097..2142693) Leptothrix cholodnii SP-6 6160737 YP_001791007.1 CDS Lcho_1975 NC_010524.1 2142722 2143048 R PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A2533 hypothetical protein; hypothetical protein complement(2142722..2143048) Leptothrix cholodnii SP-6 6160738 YP_001791008.1 CDS Lcho_1976 NC_010524.1 2143136 2145088 R KEGG: mpt:Mpe_A2534 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(2143136..2145088) Leptothrix cholodnii SP-6 6160739 YP_001791009.1 CDS Lcho_1977 NC_010524.1 2145157 2146275 D PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: ava:Ava_3213 AIR synthase related protein-like; phosphoribosylformylglycinamidine cyclo-ligase 2145157..2146275 Leptothrix cholodnii SP-6 6160740 YP_001791010.1 CDS aat NC_010524.1 2146319 2147089 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2146319..2147089 Leptothrix cholodnii SP-6 6160741 YP_001791011.1 CDS Lcho_1979 NC_010524.1 2147086 2147829 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2147086..2147829 Leptothrix cholodnii SP-6 6163938 YP_001791012.1 CDS Lcho_1980 NC_010524.1 2147864 2148247 R KEGG: pol:Bpro_3522 hypothetical protein; hypothetical protein complement(2147864..2148247) Leptothrix cholodnii SP-6 6163939 YP_001791013.1 CDS Lcho_1981 NC_010524.1 2148376 2149137 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aav:Aave_2987 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2148376..2149137 Leptothrix cholodnii SP-6 6163940 YP_001791014.1 CDS Lcho_1982 NC_010524.1 2149165 2150349 R KEGG: dar:Daro_1045 hypothetical protein; hypothetical protein complement(2149165..2150349) Leptothrix cholodnii SP-6 6163941 YP_001791015.1 CDS Lcho_1983 NC_010524.1 2150743 2151381 R KEGG: rme:Rmet_1154 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(2150743..2151381) Leptothrix cholodnii SP-6 6163942 YP_001791016.1 CDS Lcho_1984 NC_010524.1 2151416 2152117 R KEGG: mpt:Mpe_A1456 3-oxoacid CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(2151416..2152117) Leptothrix cholodnii SP-6 6163943 YP_001791017.1 CDS Lcho_1985 NC_010524.1 2152240 2152797 D PFAM: regulatory protein LuxR; KEGG: rfr:Rfer_2636 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2152240..2152797 Leptothrix cholodnii SP-6 6163282 YP_001791018.1 CDS Lcho_1986 NC_010524.1 2152818 2153717 R KEGG: sfu:Sfum_0602 hypothetical protein; hypothetical protein complement(2152818..2153717) Leptothrix cholodnii SP-6 6163283 YP_001791019.1 CDS Lcho_1987 NC_010524.1 2153887 2154354 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rso:RSc0626 probable aldehyde dehydrogenase (subunit III) oxidoreductase protein; 2Fe-2S iron-sulfur cluster-binding domain-containing protein 2153887..2154354 Leptothrix cholodnii SP-6 6163284 YP_001791020.1 CDS Lcho_1988 NC_010524.1 2154357 2156549 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: gme:Gmet_0837 twin-arginine translocation pathway signal; isoquinoline 1-oxidoreductase 2154357..2156549 Leptothrix cholodnii SP-6 6163285 YP_001791021.1 CDS Lcho_1989 NC_010524.1 2156612 2157610 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pna:Pnap_1622 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(2156612..2157610) Leptothrix cholodnii SP-6 6163286 YP_001791022.1 CDS Lcho_1990 NC_010524.1 2157636 2159051 R KEGG: mpt:Mpe_A1510 hypothetical protein; hypothetical protein complement(2157636..2159051) Leptothrix cholodnii SP-6 6163287 YP_001791023.1 CDS Lcho_1991 NC_010524.1 2159153 2160109 R PFAM: histone deacetylase superfamily; KEGG: mpt:Mpe_A1507 hypothetical protein; histone deacetylase superfamily protein complement(2159153..2160109) Leptothrix cholodnii SP-6 6163239 YP_001791024.1 CDS Lcho_1992 NC_010524.1 2160284 2160847 D TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: bmu:Bmul_1136 phasin family protein; phasin family protein 2160284..2160847 Leptothrix cholodnii SP-6 6163240 YP_001791025.1 CDS Lcho_1993 NC_010524.1 2160937 2161680 R hypothetical protein complement(2160937..2161680) Leptothrix cholodnii SP-6 6163241 YP_001791026.1 CDS Lcho_1994 NC_010524.1 2161860 2162345 D PFAM: protein of unknown function DUF461; KEGG: dac:Daci_2890 protein of unknown function DUF461; hypothetical protein 2161860..2162345 Leptothrix cholodnii SP-6 6163242 YP_001791027.1 CDS Lcho_1995 NC_010524.1 2162359 2162952 D PFAM: electron transport protein SCO1/SenC; KEGG: dac:Daci_1998 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 2162359..2162952 Leptothrix cholodnii SP-6 6163243 YP_001791028.1 CDS Lcho_1996 NC_010524.1 2163035 2163499 D PFAM: protein of unknown function DUF461; KEGG: dac:Daci_2688 protein of unknown function DUF461; hypothetical protein 2163035..2163499 Leptothrix cholodnii SP-6 6163244 YP_001791029.1 CDS Lcho_1997 NC_010524.1 2163565 2164266 R KEGG: dra:DR_0834 nitrogen regulator, putative; CRP/FNR family transcriptional regulator complement(2163565..2164266) Leptothrix cholodnii SP-6 6162403 YP_001791030.1 CDS Lcho_1998 NC_010524.1 2164406 2164786 R hypothetical protein complement(2164406..2164786) Leptothrix cholodnii SP-6 6162404 YP_001791031.1 CDS Lcho_1999 NC_010524.1 2164913 2165821 D KEGG: aav:Aave_0652 hypothetical protein; hypothetical protein 2164913..2165821 Leptothrix cholodnii SP-6 6162405 YP_001791032.1 CDS Lcho_2000 NC_010524.1 2165809 2166330 R KEGG: mpt:Mpe_A1821 hypothetical protein; hypothetical protein complement(2165809..2166330) Leptothrix cholodnii SP-6 6162406 YP_001791033.1 CDS alaS NC_010524.1 2166358 2168985 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2166358..2168985) Leptothrix cholodnii SP-6 6162407 YP_001791034.1 CDS Lcho_2002 NC_010524.1 2169080 2170384 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: pna:Pnap_2630 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 2169080..2170384 Leptothrix cholodnii SP-6 6162408 YP_001791035.1 CDS Lcho_2003 NC_010524.1 2170440 2171930 D TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: mpt:Mpe_A2324 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate-semialdehyde dehydrogenase 2170440..2171930 Leptothrix cholodnii SP-6 6162364 YP_001791036.1 CDS Lcho_2004 NC_010524.1 2171961 2172875 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mpt:Mpe_A2326 GGDEF domain containing protein; diguanylate cyclase complement(2171961..2172875) Leptothrix cholodnii SP-6 6162365 YP_001791037.1 CDS Lcho_2005 NC_010524.1 2173150 2173611 D hypothetical protein 2173150..2173611 Leptothrix cholodnii SP-6 6162366 YP_001791038.1 CDS Lcho_2006 NC_010524.1 2173723 2177190 D KEGG: mpt:Mpe_A1569 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 2173723..2177190 Leptothrix cholodnii SP-6 6162367 YP_001791039.1 CDS Lcho_2007 NC_010524.1 2177284 2177991 D KEGG: mpt:Mpe_A1568 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 2177284..2177991 Leptothrix cholodnii SP-6 6162368 YP_001791040.1 CDS Lcho_2008 NC_010524.1 2178025 2178891 R PFAM: Metal-dependent hydrolase HDOD; KEGG: har:HEAR2840 hypothetical protein; putative signal transduction protein complement(2178025..2178891) Leptothrix cholodnii SP-6 6162369 YP_001791041.1 CDS Lcho_2009 NC_010524.1 2179016 2179519 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2179016..2179519) Leptothrix cholodnii SP-6 6160760 YP_001791042.1 CDS Lcho_2010 NC_010524.1 2179551 2181500 R PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: mpt:Mpe_A3415 disulfide reductase; protein-disulfide reductase complement(2179551..2181500) Leptothrix cholodnii SP-6 6160761 YP_001791043.1 CDS Lcho_2011 NC_010524.1 2181518 2182042 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cte:CT1072 thiol:disulfide interchange protein DsbE, putative; redoxin domain-containing protein complement(2181518..2182042) Leptothrix cholodnii SP-6 6160762 YP_001791044.1 CDS Lcho_2012 NC_010524.1 2182077 2183342 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0039 major facilitator superfamily MFS_1; major facilitator transporter complement(2182077..2183342) Leptothrix cholodnii SP-6 6160763 YP_001791045.1 CDS Lcho_2013 NC_010524.1 2183558 2184949 D KEGG: mpt:Mpe_A1550 hypothetical protein; hypothetical protein 2183558..2184949 Leptothrix cholodnii SP-6 6160764 YP_001791046.1 CDS Lcho_2014 NC_010524.1 2184991 2186259 D hypothetical protein 2184991..2186259 Leptothrix cholodnii SP-6 6160765 YP_001791047.1 CDS Lcho_2015 NC_010524.1 2186357 2187475 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2186357..2187475 Leptothrix cholodnii SP-6 6160699 YP_001791048.1 CDS Lcho_2016 NC_010524.1 2187562 2187846 D KEGG: mpt:Mpe_A1552 hypothetical protein; hypothetical protein 2187562..2187846 Leptothrix cholodnii SP-6 6160700 YP_001791049.1 CDS Lcho_2017 NC_010524.1 2187854 2189479 R KEGG: mpt:Mpe_A1551 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase complement(2187854..2189479) Leptothrix cholodnii SP-6 6160701 YP_001791050.1 CDS Lcho_2018 NC_010524.1 2189668 2190909 D KEGG: mpt:Mpe_A1550 hypothetical protein; hypothetical protein 2189668..2190909 Leptothrix cholodnii SP-6 6160702 YP_001791051.1 CDS Lcho_2019 NC_010524.1 2190970 2193567 R KEGG: mpt:Mpe_A1549 putative ATP-dependent protease (heat shock protein); TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(2190970..2193567) Leptothrix cholodnii SP-6 6160703 YP_001791052.1 CDS Lcho_2020 NC_010524.1 2193698 2194177 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: aav:Aave_1248 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein complement(2193698..2194177) Leptothrix cholodnii SP-6 6160704 YP_001791053.1 CDS Lcho_2021 NC_010524.1 2194188 2194439 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: mpt:Mpe_A1545 molybdopterin converting factor subunit 1; molybdopterin converting factor subunit 1 complement(2194188..2194439) Leptothrix cholodnii SP-6 6163570 YP_001791054.1 CDS Lcho_2022 NC_010524.1 2194456 2195766 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mpt:Mpe_A1544 putative molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein complement(2194456..2195766) Leptothrix cholodnii SP-6 6163571 YP_001791055.1 CDS Lcho_2023 NC_010524.1 2195735 2196280 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mpt:Mpe_A1543 putative molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein B complement(2195735..2196280) Leptothrix cholodnii SP-6 6163572 YP_001791056.1 CDS Lcho_2024 NC_010524.1 2196318 2197736 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2196318..2197736) Leptothrix cholodnii SP-6 6163573 YP_001791057.1 CDS Lcho_2025 NC_010524.1 2197766 2199082 R PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: aav:Aave_1238 homoserine dehydrogenase; homoserine dehydrogenase complement(2197766..2199082) Leptothrix cholodnii SP-6 6163574 YP_001791058.1 CDS Lcho_2026 NC_010524.1 2199145 2200374 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(2199145..2200374) Leptothrix cholodnii SP-6 6163575 YP_001791059.1 CDS Lcho_2027 NC_010524.1 2200527 2200898 D PFAM: protein of unknown function DUF498; KEGG: mpt:Mpe_A1539 hypothetical protein; hypothetical protein 2200527..2200898 Leptothrix cholodnii SP-6 6161557 YP_001791060.1 CDS Lcho_2028 NC_010524.1 2200996 2201472 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A1538 putative bacterioferritin comigratory oxidoreductase protein; alkyl hydroperoxide reductase 2200996..2201472 Leptothrix cholodnii SP-6 6161558 YP_001791061.1 CDS Lcho_2029 NC_010524.1 2201667 2203388 D PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: mpt:Mpe_A1537 PhoH-like ATPase; PhoH family protein 2201667..2203388 Leptothrix cholodnii SP-6 6161559 YP_001791062.1 CDS Lcho_2030 NC_010524.1 2203456 2205384 R KEGG: mpt:Mpe_A1753 ATPase component ABC-type dipeptide/oligopeptide/nickel transport system; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2203456..2205384) Leptothrix cholodnii SP-6 6161560 YP_001791063.1 CDS Lcho_2031 NC_010524.1 2205381 2206859 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1752 ABC type ATPase; binding-protein-dependent transport system inner membrane protein complement(2205381..2206859) Leptothrix cholodnii SP-6 6161561 YP_001791064.1 CDS Lcho_2032 NC_010524.1 2206935 2207918 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1751 IM pore protein; binding-protein-dependent transport system inner membrane protein complement(2206935..2207918) Leptothrix cholodnii SP-6 6161562 YP_001791065.1 CDS Lcho_2033 NC_010524.1 2207915 2210140 R PFAM: extracellular solute-binding protein family 5; KEGG: mpt:Mpe_A1750 putative extracellular solute-binding protein; extracellular solute-binding protein complement(2207915..2210140) Leptothrix cholodnii SP-6 6162261 YP_001791066.1 CDS Lcho_2034 NC_010524.1 2210149 2211075 R PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: mpt:Mpe_A1749 muramoyltetrapeptide carboxypeptidase; muramoyltetrapeptide carboxypeptidase complement(2210149..2211075) Leptothrix cholodnii SP-6 6162262 YP_001791067.1 CDS Lcho_2035 NC_010524.1 2211068 2211763 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mpt:Mpe_A1748 putative hydrolase protein; CMP/dCMP deaminase complement(2211068..2211763) Leptothrix cholodnii SP-6 6162263 YP_001791068.1 CDS Lcho_2036 NC_010524.1 2211832 2214405 D KEGG: nmu:Nmul_A1648 ATPase, E1-E2 type; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; HAD superfamily P-type ATPase 2211832..2214405 Leptothrix cholodnii SP-6 6162264 YP_001791069.1 CDS Lcho_2037 NC_010524.1 2214368 2214844 R PFAM: regulatory protein AsnC/Lrp family; KEGG: reh:H16_B1084 transcriptional regulator, AsnC-family; AsnC family transcriptional regulator complement(2214368..2214844) Leptothrix cholodnii SP-6 6162265 YP_001791070.1 CDS Lcho_2038 NC_010524.1 2215071 2216045 D PFAM: protein of unknown function DUF534; KEGG: bbr:BB3356 hypothetical protein; hypothetical protein 2215071..2216045 Leptothrix cholodnii SP-6 6162266 YP_001791071.1 CDS Lcho_2039 NC_010524.1 2216096 2217037 D PFAM: inner-membrane translocator; KEGG: reh:H16_A1398 ABC-type transporter, permease component; inner-membrane translocator 2216096..2217037 Leptothrix cholodnii SP-6 6161947 YP_001791072.1 CDS Lcho_2040 NC_010524.1 2217037 2217831 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_1209 ABC transporter-related protein; ABC transporter-like protein 2217037..2217831 Leptothrix cholodnii SP-6 6161948 YP_001791073.1 CDS Lcho_2041 NC_010524.1 2217935 2219161 D PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: rha:RHA1_ro03043 glutamate dehydrogenase (NAD(P)+); Glu/Leu/Phe/Val dehydrogenase 2217935..2219161 Leptothrix cholodnii SP-6 6161949 YP_001791074.1 CDS Lcho_2042 NC_010524.1 2219206 2220282 D KEGG: ppu:PP_3433 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2219206..2220282 Leptothrix cholodnii SP-6 6161950 YP_001791075.1 CDS Lcho_2043 NC_010524.1 2220279 2220830 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pna:Pnap_1119 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2220279..2220830 Leptothrix cholodnii SP-6 6161951 YP_001791076.1 CDS Lcho_2044 NC_010524.1 2220827 2222122 D KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase 2220827..2222122 Leptothrix cholodnii SP-6 6161952 YP_001791077.1 CDS Lcho_2045 NC_010524.1 2222122 2222445 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: sal:Sala_1825 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 2222122..2222445 Leptothrix cholodnii SP-6 6163491 YP_001791078.1 CDS phhA NC_010524.1 2222459 2223370 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 2222459..2223370 Leptothrix cholodnii SP-6 6163492 YP_001791079.1 CDS Lcho_2047 NC_010524.1 2223367 2224068 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_0167 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2223367..2224068 Leptothrix cholodnii SP-6 6163493 YP_001791080.1 CDS Lcho_2048 NC_010524.1 2224095 2227295 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_1232 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(2224095..2227295) Leptothrix cholodnii SP-6 6163494 YP_001791081.1 CDS Lcho_2049 NC_010524.1 2227292 2228863 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pap:PSPA7_4014 heavy metal RND efflux membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit complement(2227292..2228863) Leptothrix cholodnii SP-6 6163495 YP_001791082.1 CDS Lcho_2050 NC_010524.1 2228869 2230104 R KEGG: pfo:Pfl_2394 heavy metal RND efflux outer membrane protein, CzcC family; CzcC family heavy metal RND efflux outer membrane protein complement(2228869..2230104) Leptothrix cholodnii SP-6 6163496 YP_001791083.1 CDS Lcho_2051 NC_010524.1 2230183 2230575 R KEGG: pol:Bpro_3494 hypothetical protein; hypothetical protein complement(2230183..2230575) Leptothrix cholodnii SP-6 6160587 YP_001791084.1 CDS Lcho_2052 NC_010524.1 2230808 2230966 D KEGG: reu:Reut_A2520 hypothetical protein; hypothetical protein 2230808..2230966 Leptothrix cholodnii SP-6 6160588 YP_001791085.1 CDS Lcho_2053 NC_010524.1 2231094 2232533 D PFAM: protein of unknown function DUF195; KEGG: mpt:Mpe_A1514 hypothetical protein; hypothetical protein 2231094..2232533 Leptothrix cholodnii SP-6 6160589 YP_001791086.1 CDS Lcho_2054 NC_010524.1 2232546 2234513 R TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: mpt:Mpe_A1964 hypothetical protein; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC complement(2232546..2234513) Leptothrix cholodnii SP-6 6160590 YP_001791087.1 CDS rimO NC_010524.1 2234595 2235995 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 2234595..2235995 Leptothrix cholodnii SP-6 6160591 YP_001791088.1 CDS Lcho_2056 NC_010524.1 2236017 2237216 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mpt:Mpe_A1615 putative cystathionine beta-lyase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 2236017..2237216 Leptothrix cholodnii SP-6 6160592 YP_001791089.1 CDS smpB NC_010524.1 2237220 2237684 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2237220..2237684) Leptothrix cholodnii SP-6 6160990 YP_001791090.1 CDS Lcho_2058 NC_010524.1 2237769 2238236 D PFAM: cyclase/dehydrase; KEGG: mpt:Mpe_A1617 hypothetical protein; cyclase/dehydrase 2237769..2238236 Leptothrix cholodnii SP-6 6160991 YP_001791091.1 CDS Lcho_2059 NC_010524.1 2238223 2238603 D PFAM: protein of unknown function UPF0125; KEGG: mpt:Mpe_A1618 hypothetical protein; hypothetical protein 2238223..2238603 Leptothrix cholodnii SP-6 6160992 YP_001791092.1 CDS Lcho_2060 NC_010524.1 2238617 2239162 R KEGG: mpt:Mpe_A1619 putative transmembrane protein; putative transmembrane protein complement(2238617..2239162) Leptothrix cholodnii SP-6 6160993 YP_001791093.1 CDS Lcho_2061 NC_010524.1 2239273 2240742 D KEGG: mpt:Mpe_A1620 IMP dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 2239273..2240742 Leptothrix cholodnii SP-6 6160994 YP_001791094.1 CDS Lcho_2062 NC_010524.1 2240755 2242065 D PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1621 tetracycline-efflux transporter; major facilitator transporter 2240755..2242065 Leptothrix cholodnii SP-6 6160995 YP_001791095.1 CDS Lcho_2063 NC_010524.1 2242073 2243671 D KEGG: bmu:Bmul_1287 GMP synthase, large subunit; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; GMP synthase 2242073..2243671 Leptothrix cholodnii SP-6 6162827 YP_001791096.1 CDS Lcho_2064 NC_010524.1 2243713 2245035 D PFAM: Chloride channel core; KEGG: psb:Psyr_1486 Cl-channel, voltage gated; chloride channel core 2243713..2245035 Leptothrix cholodnii SP-6 6162828 YP_001791097.1 CDS Lcho_2065 NC_010524.1 2245049 2245492 R PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_3014 thioesterase superfamily; thioesterase superfamily protein complement(2245049..2245492) Leptothrix cholodnii SP-6 6162829 YP_001791098.1 CDS Lcho_2066 NC_010524.1 2245529 2246197 R PFAM: protein of unknown function DUF480; KEGG: bmu:Bmul_3231 protein of unknown function DUF480; hypothetical protein complement(2245529..2246197) Leptothrix cholodnii SP-6 6162830 YP_001791099.1 CDS Lcho_2067 NC_010524.1 2246217 2246999 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A1448 short chain dehydrogenase; short chain dehydrogenase complement(2246217..2246999) Leptothrix cholodnii SP-6 6162831 YP_001791100.1 CDS Lcho_2068 NC_010524.1 2247103 2249292 R KEGG: pmy:Pmen_4512 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2247103..2249292) Leptothrix cholodnii SP-6 6162832 YP_001791101.1 CDS Lcho_2069 NC_010524.1 2249604 2251289 D PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pol:Bpro_1895 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2249604..2251289 Leptothrix cholodnii SP-6 6163528 YP_001791102.1 CDS Lcho_2070 NC_010524.1 2251478 2253766 D binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 2251478..2253766 Leptothrix cholodnii SP-6 6163529 YP_001791103.1 CDS Lcho_2071 NC_010524.1 2253814 2254953 D catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 2253814..2254953 Leptothrix cholodnii SP-6 6163530 YP_001791104.1 CDS Lcho_2072 NC_010524.1 2254923 2258657 D PFAM: TPR repeat-containing protein; cellulose synthase operon C domain protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rme:Rmet_2252 cellulose synthase operon C-like protein; cellulose synthase domain-containing protein 2254923..2258657 Leptothrix cholodnii SP-6 6163531 YP_001791105.1 CDS Lcho_2073 NC_010524.1 2258673 2260262 R TIGRFAM: cellulose synthase operon protein YhjU; KEGG: mms:mma_1625 hypothetical protein; cellulose synthase operon protein YhjU complement(2258673..2260262) Leptothrix cholodnii SP-6 6163532 YP_001791106.1 CDS Lcho_2074 NC_010524.1 2260274 2262829 R KEGG: bch:Bcen2424_1385 cellulose synthase (UDP-forming); TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; cellulose synthase catalytic subunit complement(2260274..2262829) Leptothrix cholodnii SP-6 6163533 YP_001791107.1 CDS Lcho_2075 NC_010524.1 2262924 2263706 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: msm:MSMEG_1594 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(2262924..2263706) Leptothrix cholodnii SP-6 6162453 YP_001791108.1 CDS Lcho_2076 NC_010524.1 2263738 2265408 R PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A1435 putative CoA ligase (AMP-forming); AMP-dependent synthetase and ligase complement(2263738..2265408) Leptothrix cholodnii SP-6 6162454 YP_001791109.1 CDS Lcho_2077 NC_010524.1 2265513 2266685 D TIGRFAM: lytic murein transglycosylase B; KEGG: mpt:Mpe_A1242 putative membrane-bound lytic murein transglycosylase B protein; lytic murein transglycosylase B 2265513..2266685 Leptothrix cholodnii SP-6 6162455 YP_001791110.1 CDS Lcho_2078 NC_010524.1 2266744 2268708 D PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1802 putative ATP-binding ABC transporter protein; ABC transporter-like protein 2266744..2268708 Leptothrix cholodnii SP-6 6162456 YP_001791111.1 CDS Lcho_2079 NC_010524.1 2268763 2269932 D PFAM: Radical SAM domain protein; KEGG: mpt:Mpe_A2509 hypothetical protein; radical SAM domain-containing protein 2268763..2269932 Leptothrix cholodnii SP-6 6162457 YP_001791112.1 CDS Lcho_2080 NC_010524.1 2270242 2270667 D PFAM: OsmC family protein; KEGG: psa:PST_0169 organic hydroperoxide resistance protein; OsmC family protein 2270242..2270667 Leptothrix cholodnii SP-6 6162458 YP_001791113.1 CDS Lcho_2081 NC_010524.1 2270698 2271627 R PFAM: Asparaginase/glutaminase; KEGG: mpt:Mpe_A1865 asparaginase; asparaginase complement(2270698..2271627) Leptothrix cholodnii SP-6 6162346 YP_001791114.1 CDS Lcho_2082 NC_010524.1 2271824 2272519 D Represses a number of genes involved in the response to DNA damage; LexA repressor 2271824..2272519 Leptothrix cholodnii SP-6 6162347 YP_001791115.1 CDS Lcho_2083 NC_010524.1 2272823 2272924 D hypothetical protein 2272823..2272924 Leptothrix cholodnii SP-6 6162348 YP_001791116.1 CDS Lcho_2084 NC_010524.1 2272954 2274033 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 2272954..2274033 Leptothrix cholodnii SP-6 6162349 YP_001791117.1 CDS fabG NC_010524.1 2274131 2274868 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2274131..2274868) Leptothrix cholodnii SP-6 6162350 YP_001791118.1 CDS Lcho_2086 NC_010524.1 2275045 2276223 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(2275045..2276223) Leptothrix cholodnii SP-6 6162351 YP_001791119.1 CDS Lcho_2087 NC_010524.1 2276302 2278062 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mpt:Mpe_A1870 putative poly-beta-hydroxybutyrate polymerase transmembrane protein; poly(R)-hydroxyalkanoic acid synthase complement(2276302..2278062) Leptothrix cholodnii SP-6 6162062 YP_001791120.1 CDS Lcho_2088 NC_010524.1 2278214 2278510 D KEGG: rfr:Rfer_2563 hypothetical protein; hypothetical protein 2278214..2278510 Leptothrix cholodnii SP-6 6162063 YP_001791121.1 CDS Lcho_2089 NC_010524.1 2278430 2279251 R PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; hypothetical protein complement(2278430..2279251) Leptothrix cholodnii SP-6 6162064 YP_001791122.1 CDS Lcho_2090 NC_010524.1 2279252 2279893 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A1872 putative glutathione-S-transferase; maleylacetoacetate isomerase complement(2279252..2279893) Leptothrix cholodnii SP-6 6162065 YP_001791123.1 CDS Lcho_2091 NC_010524.1 2279973 2280518 D PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1874 hypothetical protein; NUDIX hydrolase 2279973..2280518 Leptothrix cholodnii SP-6 6162066 YP_001791124.1 CDS Lcho_2092 NC_010524.1 2280641 2282863 D KEGG: mpt:Mpe_A1875 putative ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 2280641..2282863 Leptothrix cholodnii SP-6 6162067 YP_001791125.1 CDS Lcho_2093 NC_010524.1 2282860 2284266 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A1876 HlyD family secretion protein; HlyD family type I secretion membrane fusion protein 2282860..2284266 Leptothrix cholodnii SP-6 6160871 YP_001791126.1 CDS Lcho_2094 NC_010524.1 2284584 2288870 D TIGRFAM: outer membrane adhesin like proteiin; KEGG: prw:PsycPRwf_1167 putative outer membrane adhesin like proteiin; outer membrane adhesin-like protein 2284584..2288870 Leptothrix cholodnii SP-6 6160872 YP_001791127.1 CDS Lcho_2095 NC_010524.1 2288881 2290779 R PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: mpt:Mpe_A1878 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(2288881..2290779) Leptothrix cholodnii SP-6 6160873 YP_001791128.1 CDS Lcho_2096 NC_010524.1 2290805 2291542 R KEGG: mpt:Mpe_A1879 hypothetical protein; hypothetical protein complement(2290805..2291542) Leptothrix cholodnii SP-6 6160874 YP_001791129.1 CDS Lcho_2097 NC_010524.1 2291781 2293682 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mpt:Mpe_A1880 outer membrane protein; TolC family type I secretion outer membrane protein 2291781..2293682 Leptothrix cholodnii SP-6 6160875 YP_001791130.1 CDS Lcho_2098 NC_010524.1 2293710 2294558 R TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mpt:Mpe_A1081 arginase; arginase complement(2293710..2294558) Leptothrix cholodnii SP-6 6160876 YP_001791131.1 CDS Lcho_2099 NC_010524.1 2294636 2295547 R PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A1082 hypothetical protein; hypothetical protein complement(2294636..2295547) Leptothrix cholodnii SP-6 6161419 YP_001791132.1 CDS Lcho_2100 NC_010524.1 2295615 2296370 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: mpt:Mpe_A1083 putative molybdopterin biosynthesis protein; UBA/THIF-type NAD/FAD-binding protein complement(2295615..2296370) Leptothrix cholodnii SP-6 6161420 YP_001791133.1 CDS Lcho_2101 NC_010524.1 2296457 2297905 R KEGG: mpt:Mpe_A1084 C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(2296457..2297905) Leptothrix cholodnii SP-6 6161421 YP_001791134.1 CDS Lcho_2102 NC_010524.1 2298079 2299149 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A1085 putative transport system ATP-binding protein; ABC transporter-like protein complement(2298079..2299149) Leptothrix cholodnii SP-6 6161422 YP_001791135.1 CDS Lcho_2103 NC_010524.1 2299239 2300870 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1086 ABC-type Fe3+ transport system, permease component; binding-protein-dependent transport system inner membrane protein 2299239..2300870 Leptothrix cholodnii SP-6 6161423 YP_001791136.1 CDS Lcho_2104 NC_010524.1 2301175 2302695 D PFAM: Aldehyde Dehydrogenase_; KEGG: pna:Pnap_3013 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 2301175..2302695 Leptothrix cholodnii SP-6 6161424 YP_001791137.1 CDS Lcho_2105 NC_010524.1 2302812 2303180 D PFAM: protein of unknown function DUF779; KEGG: aeh:Mlg_2727 protein of unknown function DUF779; hypothetical protein 2302812..2303180 Leptothrix cholodnii SP-6 6161343 YP_001791138.1 CDS queF NC_010524.1 2303230 2304078 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2303230..2304078 Leptothrix cholodnii SP-6 6161344 YP_001791139.1 CDS Lcho_2107 NC_010524.1 2304120 2304479 D PFAM: arsenate reductase and related; KEGG: aav:Aave_1859 arsenate reductase; arsenate reductase-like protein 2304120..2304479 Leptothrix cholodnii SP-6 6161345 YP_001791140.1 CDS Lcho_2108 NC_010524.1 2304639 2305001 D PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7; roadblock/LC7 family protein 2304639..2305001 Leptothrix cholodnii SP-6 6161346 YP_001791141.1 CDS Lcho_2109 NC_010524.1 2305001 2305774 D KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component; ABC-type phosphate/phosphonate transport system periplasmic component-like protein 2305001..2305774 Leptothrix cholodnii SP-6 6161347 YP_001791142.1 CDS Lcho_2110 NC_010524.1 2305795 2306946 R KEGG: mmw:Mmwyl1_3836 hypothetical protein; hypothetical protein complement(2305795..2306946) Leptothrix cholodnii SP-6 6161348 YP_001791143.1 CDS Lcho_2111 NC_010524.1 2307035 2308951 D PFAM: protein of unknown function DUF839; KEGG: mpt:Mpe_A3526 hypothetical protein; hypothetical protein 2307035..2308951 Leptothrix cholodnii SP-6 6162018 YP_001791144.1 CDS Lcho_2112 NC_010524.1 2309050 2310033 D KEGG: vei:Veis_2448 hypothetical protein; hypothetical protein 2309050..2310033 Leptothrix cholodnii SP-6 6162019 YP_001791145.1 CDS Lcho_2113 NC_010524.1 2310065 2310772 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2310065..2310772 Leptothrix cholodnii SP-6 6162020 YP_001791146.1 CDS Lcho_2114 NC_010524.1 2310789 2311340 D PFAM: protein of unknown function DUF1415; KEGG: xac:XAC3675 hypothetical protein; hypothetical protein 2310789..2311340 Leptothrix cholodnii SP-6 6162021 YP_001791147.1 CDS Lcho_2115 NC_010524.1 2311423 2312343 R PFAM: pyruvate carboxyltransferase; KEGG: mpt:Mpe_A3354 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase complement(2311423..2312343) Leptothrix cholodnii SP-6 6162022 YP_001791148.1 CDS Lcho_2116 NC_010524.1 2312366 2314444 R PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: mpt:Mpe_A3356 putative acyl-CoA carboxylase alpha chain protein; carbamoyl-phosphate synthase L chain ATP-binding complement(2312366..2314444) Leptothrix cholodnii SP-6 6162023 YP_001791149.1 CDS Lcho_2117 NC_010524.1 2314457 2315245 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rso:RSc0267 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(2314457..2315245) Leptothrix cholodnii SP-6 6162037 YP_001791150.1 CDS Lcho_2118 NC_010524.1 2315248 2316870 R PFAM: carboxyl transferase; KEGG: mpt:Mpe_A3359 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(2315248..2316870) Leptothrix cholodnii SP-6 6162038 YP_001791151.1 CDS Lcho_2119 NC_010524.1 2316872 2318044 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mpt:Mpe_A3360 acyl-CoA dehydrogenase, probably isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2316872..2318044) Leptothrix cholodnii SP-6 6162039 YP_001791152.1 CDS Lcho_2120 NC_010524.1 2318223 2318927 D PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A3361 putative TetR family transcriptional regulator; TetR family transcriptional regulator 2318223..2318927 Leptothrix cholodnii SP-6 6162040 YP_001791153.1 CDS Lcho_2121 NC_010524.1 2319009 2319245 D KEGG: eba:ebA4129 hypothetical protein; hypothetical protein 2319009..2319245 Leptothrix cholodnii SP-6 6162041 YP_001791154.1 CDS Lcho_2122 NC_010524.1 2319283 2320386 R PFAM: acyltransferase 3; KEGG: reu:Reut_B3984 acyltransferase 3; acyltransferase 3 complement(2319283..2320386) Leptothrix cholodnii SP-6 6162042 YP_001791155.1 CDS Lcho_2123 NC_010524.1 2320383 2324120 R PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mpt:Mpe_A2968 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase complement(2320383..2324120) Leptothrix cholodnii SP-6 6162712 YP_001791156.1 CDS Lcho_2124 NC_010524.1 2324139 2325317 R PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 12; KEGG: azo:azo3853 hypothetical protein; methyltransferase small complement(2324139..2325317) Leptothrix cholodnii SP-6 6162713 YP_001791157.1 CDS Lcho_2125 NC_010524.1 2325295 2325735 R KEGG: yli:YALI0B14795g hypothetical protein; hypothetical protein complement(2325295..2325735) Leptothrix cholodnii SP-6 6162714 YP_001791158.1 CDS Lcho_2126 NC_010524.1 2325796 2326815 R PFAM: dihydrouridine synthase DuS; KEGG: ajs:Ajs_3192 dihydrouridine synthase, DuS; dihydrouridine synthase DuS complement(2325796..2326815) Leptothrix cholodnii SP-6 6162715 YP_001791159.1 CDS Lcho_2127 NC_010524.1 2327005 2327511 D KEGG: ilo:IL0575 predicted secreted protein; hypothetical protein 2327005..2327511 Leptothrix cholodnii SP-6 6162716 YP_001791160.1 CDS Lcho_2128 NC_010524.1 2327552 2328163 R PFAM: protein of unknown function DUF924; KEGG: bxe:Bxe_A3243 putative transmembrane protein; hypothetical protein complement(2327552..2328163) Leptothrix cholodnii SP-6 6162717 YP_001791161.1 CDS Lcho_2129 NC_010524.1 2328259 2331249 R PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: chy:CHY_2596 putative nitrate reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2328259..2331249) Leptothrix cholodnii SP-6 6161622 YP_001791162.1 CDS Lcho_2130 NC_010524.1 2331561 2332292 D KEGG: afu:AF0417 A. fulgidus predicted coding region AF0417; hypothetical protein 2331561..2332292 Leptothrix cholodnii SP-6 6161623 YP_001791163.1 CDS Lcho_2131 NC_010524.1 2332302 2333111 D KEGG: pin:Ping_2136 hypothetical protein; hypothetical protein 2332302..2333111 Leptothrix cholodnii SP-6 6161624 YP_001791164.1 CDS Lcho_2132 NC_010524.1 2333115 2333804 D hypothetical protein 2333115..2333804 Leptothrix cholodnii SP-6 6161625 YP_001791165.1 CDS Lcho_2133 NC_010524.1 2333839 2336271 R PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aav:Aave_2437 radical SAM N-terminal domain protein; radical SAM domain-containing protein complement(2333839..2336271) Leptothrix cholodnii SP-6 6161626 YP_001791166.1 CDS Lcho_2134 NC_010524.1 2336442 2336660 R KEGG: mpt:Mpe_A1301 hypothetical protein; hypothetical protein complement(2336442..2336660) Leptothrix cholodnii SP-6 6161627 YP_001791167.1 CDS Lcho_2135 NC_010524.1 2336928 2338820 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo0660 ABC transporter permease and ATP-binding protein; ABC transporter-like protein complement(2336928..2338820) Leptothrix cholodnii SP-6 6162919 YP_001791168.1 CDS Lcho_2136 NC_010524.1 2338991 2340010 D PFAM: extracellular solute-binding protein family 3; KEGG: rfr:Rfer_2324 extracellular solute-binding protein, family 3; extracellular solute-binding protein 2338991..2340010 Leptothrix cholodnii SP-6 6162920 YP_001791169.1 CDS Lcho_2137 NC_010524.1 2340039 2341070 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2325 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 2340039..2341070 Leptothrix cholodnii SP-6 6162921 YP_001791170.1 CDS Lcho_2138 NC_010524.1 2341231 2342331 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2326 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 2341231..2342331 Leptothrix cholodnii SP-6 6162922 YP_001791171.1 CDS Lcho_2139 NC_010524.1 2342456 2343211 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2327 ABC transporter related; ABC transporter-like protein 2342456..2343211 Leptothrix cholodnii SP-6 6162923 YP_001791172.1 CDS Lcho_2140 NC_010524.1 2343208 2343354 D KEGG: pen:PSEEN0366 hypothetical protein; hypothetical protein 2343208..2343354 Leptothrix cholodnii SP-6 6162924 YP_001791173.1 CDS Lcho_2141 NC_010524.1 2343344 2343703 D KEGG: pen:PSEEN0367 hypothetical protein; hypothetical protein 2343344..2343703 Leptothrix cholodnii SP-6 6163883 YP_001791174.1 CDS Lcho_2143 NC_010524.1 2344119 2345084 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rfr:Rfer_2438 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2344119..2345084) Leptothrix cholodnii SP-6 6163885 YP_001791175.1 CDS Lcho_2144 NC_010524.1 2345211 2346017 D PFAM: Carboxymuconolactone decarboxylase; Cupin 2 conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2345211..2346017 Leptothrix cholodnii SP-6 6163886 YP_001791176.1 CDS Lcho_2145 NC_010524.1 2346029 2346205 D hypothetical protein 2346029..2346205 Leptothrix cholodnii SP-6 6163887 YP_001791177.1 CDS Lcho_2146 NC_010524.1 2346240 2347457 D PFAM: aldo/keto reductase; KEGG: pde:Pden_3243 aldo/keto reductase; aldo/keto reductase 2346240..2347457 Leptothrix cholodnii SP-6 6163888 YP_001791178.1 CDS Lcho_2147 NC_010524.1 2347685 2348692 R PFAM: sodium/calcium exchanger membrane region; KEGG: rfr:Rfer_1133 sodium/calcium exchanger membrane protein; sodium/calcium exchanger membrane region complement(2347685..2348692) Leptothrix cholodnii SP-6 6163719 YP_001791179.1 CDS Lcho_2148 NC_010524.1 2348815 2350065 D PFAM: protein of unknown function DUF1504; KEGG: pol:Bpro_2221 protein of unknown function DUF1504; hypothetical protein 2348815..2350065 Leptothrix cholodnii SP-6 6163720 YP_001791180.1 CDS Lcho_2149 NC_010524.1 2350189 2350779 D KEGG: rfr:Rfer_2187 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase subunit gamma 2350189..2350779 Leptothrix cholodnii SP-6 6163721 YP_001791181.1 CDS Lcho_2150 NC_010524.1 2350763 2352028 D PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_2186 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2350763..2352028 Leptothrix cholodnii SP-6 6163722 YP_001791182.1 CDS Lcho_2151 NC_010524.1 2352365 2353396 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rfr:Rfer_2185 thiamine pyrophosphate enzyme-like TPP-binding; thiamine pyrophosphate-binding domain-containing protein 2352365..2353396 Leptothrix cholodnii SP-6 6163723 YP_001791183.1 CDS Lcho_2152 NC_010524.1 2353393 2355108 D unknown function; putative glutamate synthase (NADPH) small subunit 2353393..2355108 Leptothrix cholodnii SP-6 6163724 YP_001791184.1 CDS Lcho_2153 NC_010524.1 2355173 2356387 D PFAM: extracellular solute-binding protein family 1; KEGG: rsq:Rsph17025_1446 ABC-type uncharacterized transport system periplasmic component-like protein; extracellular solute-binding protein 2355173..2356387 Leptothrix cholodnii SP-6 6161451 YP_001791185.1 CDS Lcho_2154 NC_010524.1 2356363 2358099 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsh:Rsph17029_1833 ABC transporter, fused inner membrane subunits; binding-protein-dependent transport system inner membrane protein 2356363..2358099 Leptothrix cholodnii SP-6 6161452 YP_001791186.1 CDS Lcho_2155 NC_010524.1 2358096 2358740 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsh:Rsph17029_1834 ABC transporter related; ABC transporter-like protein 2358096..2358740 Leptothrix cholodnii SP-6 6161453 YP_001791187.1 CDS Lcho_2156 NC_010524.1 2358737 2359912 D PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1135 major facilitator superfamily MFS_1; major facilitator transporter 2358737..2359912 Leptothrix cholodnii SP-6 6161454 YP_001791188.1 CDS Lcho_2157 NC_010524.1 2359978 2360619 D PFAM: cation efflux protein; KEGG: mpt:Mpe_A1655 hypothetical protein; cation efflux protein 2359978..2360619 Leptothrix cholodnii SP-6 6161455 YP_001791189.1 CDS Lcho_2158 NC_010524.1 2360603 2361055 D PFAM: Disulphide bond formation protein DsbB; KEGG: psa:PST_0576 disulfide bond formation protein; disulfide bond formation protein DsbB 2360603..2361055 Leptothrix cholodnii SP-6 6161456 YP_001791190.1 CDS Lcho_2159 NC_010524.1 2361052 2361717 D KEGG: rfr:Rfer_0414 DsbA oxidoreductase; DsbA oxidoreductase 2361052..2361717 Leptothrix cholodnii SP-6 6163706 YP_001791191.1 CDS Lcho_2160 NC_010524.1 2361722 2362219 R hypothetical protein complement(2361722..2362219) Leptothrix cholodnii SP-6 6163707 YP_001791192.1 CDS Lcho_2161 NC_010524.1 2362283 2362924 R PFAM: GTP cyclohydrolase II; KEGG: reu:Reut_B4241 GTP cyclohydrolase II; GTP cyclohydrolase II complement(2362283..2362924) Leptothrix cholodnii SP-6 6163708 YP_001791193.1 CDS Lcho_2162 NC_010524.1 2363124 2364827 D PFAM: protein of unknown function DUF1302; KEGG: gme:Gmet_2248 hypothetical protein; hypothetical protein 2363124..2364827 Leptothrix cholodnii SP-6 6163709 YP_001791194.1 CDS Lcho_2163 NC_010524.1 2364838 2366187 D PFAM: protein of unknown function DUF1329; KEGG: psa:PST_0616 hypothetical protein; hypothetical protein 2364838..2366187 Leptothrix cholodnii SP-6 6163710 YP_001791195.1 CDS Lcho_2164 NC_010524.1 2366218 2367324 D KEGG: psa:PST_0617 glycosyl hydrolase; glycosyl hydrolase 2366218..2367324 Leptothrix cholodnii SP-6 6163711 YP_001791196.1 CDS Lcho_2165 NC_010524.1 2367396 2369822 D KEGG: psa:PST_0618 transporter, putative; transporter 2367396..2369822 Leptothrix cholodnii SP-6 6163497 YP_001791197.1 CDS Lcho_2166 NC_010524.1 2369829 2370200 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: ppf:Pput_2672 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 2369829..2370200 Leptothrix cholodnii SP-6 6163498 YP_001791198.1 CDS Lcho_2167 NC_010524.1 2370313 2372349 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: gur:Gura_2167 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2370313..2372349 Leptothrix cholodnii SP-6 6163499 YP_001791199.1 CDS Lcho_2168 NC_010524.1 2372379 2373671 R PFAM: HipA domain protein; KEGG: pol:Bpro_1570 hypothetical protein; hypothetical protein complement(2372379..2373671) Leptothrix cholodnii SP-6 6163500 YP_001791200.1 CDS Lcho_2169 NC_010524.1 2374432 2374803 D KEGG: ppd:Ppro_3210 hypothetical protein; hypothetical protein 2374432..2374803 Leptothrix cholodnii SP-6 6163501 YP_001791201.1 CDS Lcho_2170 NC_010524.1 2375075 2376169 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4540 conserved hypothetical protein 698; hypothetical protein complement(2375075..2376169) Leptothrix cholodnii SP-6 6163502 YP_001791202.1 CDS Lcho_2171 NC_010524.1 2376173 2377813 R PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_5305 acyl-CoA synthetase; AMP-dependent synthetase and ligase complement(2376173..2377813) Leptothrix cholodnii SP-6 6163150 YP_001791203.1 CDS Lcho_2172 NC_010524.1 2377914 2379272 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_0776 major facilitator superfamily MFS_1; major facilitator transporter complement(2377914..2379272) Leptothrix cholodnii SP-6 6163151 YP_001791204.1 CDS Lcho_2173 NC_010524.1 2379287 2380279 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_2009 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase complement(2379287..2380279) Leptothrix cholodnii SP-6 6163152 YP_001791205.1 CDS Lcho_2174 NC_010524.1 2380307 2381365 R PFAM: protein of unknown function DUF849; KEGG: reh:H16_B2526 hypothetical protein; hypothetical protein complement(2380307..2381365) Leptothrix cholodnii SP-6 6163153 YP_001791206.1 CDS Lcho_2175 NC_010524.1 2381421 2382341 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_A2147 taurine dioxygenase; taurine dioxygenase complement(2381421..2382341) Leptothrix cholodnii SP-6 6163154 YP_001791207.1 CDS Lcho_2176 NC_010524.1 2382479 2385145 R PFAM: regulatory protein LuxR; KEGG: bps:BPSS2291 GerE family regulatory protein; ATP-dependent transcription regulator LuxR complement(2382479..2385145) Leptothrix cholodnii SP-6 6163155 YP_001791208.1 CDS Lcho_2177 NC_010524.1 2385326 2386105 D PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein; KEGG: nve:NEMVE_v1g233975 predicted protein Pfam: SCP PROSITE: CRISP_1; hypothetical protein 2385326..2386105 Leptothrix cholodnii SP-6 6162873 YP_001791209.1 CDS Lcho_2178 NC_010524.1 2386289 2386699 R hypothetical protein complement(2386289..2386699) Leptothrix cholodnii SP-6 6162874 YP_001791210.1 CDS Lcho_2179 NC_010524.1 2386823 2387155 R KEGG: ppd:Ppro_3130 hypothetical protein; hypothetical protein complement(2386823..2387155) Leptothrix cholodnii SP-6 6162875 YP_001791211.1 CDS Lcho_2180 NC_010524.1 2387333 2387467 R hypothetical protein complement(2387333..2387467) Leptothrix cholodnii SP-6 6162876 YP_001791212.1 CDS Lcho_2181 NC_010524.1 2387470 2388006 R hypothetical protein complement(2387470..2388006) Leptothrix cholodnii SP-6 6162877 YP_001791213.1 CDS Lcho_2182 NC_010524.1 2388003 2388452 R hypothetical protein complement(2388003..2388452) Leptothrix cholodnii SP-6 6162878 YP_001791214.1 CDS Lcho_2183 NC_010524.1 2388449 2389138 R KEGG: jan:Jann_1611 serine/threonine protein kinase; serine/threonine protein kinase complement(2388449..2389138) Leptothrix cholodnii SP-6 6162429 YP_001791215.1 CDS Lcho_2184 NC_010524.1 2389172 2389441 R hypothetical protein complement(2389172..2389441) Leptothrix cholodnii SP-6 6162430 YP_001791216.1 CDS Lcho_2185 NC_010524.1 2389438 2389770 R hypothetical protein complement(2389438..2389770) Leptothrix cholodnii SP-6 6162431 YP_001791217.1 CDS Lcho_2186 NC_010524.1 2389754 2389990 R hypothetical protein complement(2389754..2389990) Leptothrix cholodnii SP-6 6162432 YP_001791218.1 CDS Lcho_2187 NC_010524.1 2389993 2390805 R hypothetical protein complement(2389993..2390805) Leptothrix cholodnii SP-6 6162433 YP_001791219.1 CDS Lcho_2188 NC_010524.1 2390995 2393196 R KEGG: reh:H16_B2382 putative helicase; hypothetical protein complement(2390995..2393196) Leptothrix cholodnii SP-6 6162434 YP_001791220.1 CDS Lcho_2189 NC_010524.1 2393193 2393723 R hypothetical protein complement(2393193..2393723) Leptothrix cholodnii SP-6 6162352 YP_001791221.1 CDS Lcho_2190 NC_010524.1 2393725 2393931 R hypothetical protein complement(2393725..2393931) Leptothrix cholodnii SP-6 6162353 YP_001791222.1 CDS Lcho_2191 NC_010524.1 2393924 2394136 R hypothetical protein complement(2393924..2394136) Leptothrix cholodnii SP-6 6162354 YP_001791223.1 CDS Lcho_2192 NC_010524.1 2394133 2394396 R hypothetical protein complement(2394133..2394396) Leptothrix cholodnii SP-6 6162355 YP_001791224.1 CDS Lcho_2193 NC_010524.1 2394670 2394840 D hypothetical protein 2394670..2394840 Leptothrix cholodnii SP-6 6162356 YP_001791225.1 CDS Lcho_2194 NC_010524.1 2395035 2395325 R hypothetical protein complement(2395035..2395325) Leptothrix cholodnii SP-6 6162357 YP_001791226.1 CDS Lcho_2195 NC_010524.1 2395322 2395762 R KEGG: pna:Pnap_4720 hypothetical protein; hypothetical protein complement(2395322..2395762) Leptothrix cholodnii SP-6 6161987 YP_001791227.1 CDS Lcho_2196 NC_010524.1 2395762 2396160 R hypothetical protein complement(2395762..2396160) Leptothrix cholodnii SP-6 6161988 YP_001791228.1 CDS Lcho_2197 NC_010524.1 2396173 2396409 R TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA complement(2396173..2396409) Leptothrix cholodnii SP-6 6161989 YP_001791229.1 CDS Lcho_2198 NC_010524.1 2396973 2397221 R hypothetical protein complement(2396973..2397221) Leptothrix cholodnii SP-6 6161990 YP_001791230.1 CDS Lcho_2199 NC_010524.1 2397218 2397475 R hypothetical protein complement(2397218..2397475) Leptothrix cholodnii SP-6 6161991 YP_001791231.1 CDS Lcho_2200 NC_010524.1 2397472 2398719 R PFAM: integrase family protein; KEGG: vei:Veis_2767 phage integrase family protein; integrase family protein complement(2397472..2398719) Leptothrix cholodnii SP-6 6161992 YP_001791232.1 CDS Lcho_2201 NC_010524.1 2399659 2401062 D KEGG: ppu:PP_3397 hypothetical protein; hypothetical protein 2399659..2401062 Leptothrix cholodnii SP-6 6160583 YP_001791233.1 CDS Lcho_2202 NC_010524.1 2401080 2403605 D PFAM: Fibronectin type III domain protein; KEGG: pen:PSEEN2822 hypothetical protein; fibronectin type III domain-containing protein 2401080..2403605 Leptothrix cholodnii SP-6 6160584 YP_001791234.1 CDS Lcho_2203 NC_010524.1 2403878 2405167 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: mms:mma_1067 cytosine/purine/uracil/thiamine/allantoin permease family protein (NCS1 family); cytosine/purines uracil thiamine allantoin permease 2403878..2405167 Leptothrix cholodnii SP-6 6160585 YP_001791235.1 CDS Lcho_2204 NC_010524.1 2405233 2406117 R KEGG: dac:Daci_3294 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase complement(2405233..2406117) Leptothrix cholodnii SP-6 6160586 YP_001791236.1 CDS Lcho_2205 NC_010524.1 2406114 2406776 R KEGG: dvl:Dvul_0900 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2406114..2406776) Leptothrix cholodnii SP-6 6163307 YP_001791237.1 CDS Lcho_2206 NC_010524.1 2406769 2407656 R PFAM: hydroxyethylthiazole kinase; KEGG: rfr:Rfer_2472 hydroxyethylthiazole kinase; hydroxyethylthiazole kinase complement(2406769..2407656) Leptothrix cholodnii SP-6 6163308 YP_001791238.1 CDS Lcho_2207 NC_010524.1 2407704 2409155 R PFAM: carbohydrate kinase FGGY; KEGG: vei:Veis_2124 carbohydrate kinase, FGGY; carbohydrate kinase FGGY complement(2407704..2409155) Leptothrix cholodnii SP-6 6163309 YP_001791239.1 CDS Lcho_2208 NC_010524.1 2409164 2409484 R TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: vei:Veis_2123 protein of unknown function DUF718; L-rhamnose 1-epimerase complement(2409164..2409484) Leptothrix cholodnii SP-6 6163310 YP_001791240.1 CDS Lcho_2209 NC_010524.1 2409504 2410487 R PFAM: inner-membrane translocator; KEGG: vei:Veis_2122 inner-membrane translocator; monosaccharide-transporting ATPase complement(2409504..2410487) Leptothrix cholodnii SP-6 6163311 YP_001791241.1 CDS Lcho_2210 NC_010524.1 2410484 2411515 R PFAM: inner-membrane translocator; KEGG: vei:Veis_2121 inner-membrane translocator; monosaccharide-transporting ATPase complement(2410484..2411515) Leptothrix cholodnii SP-6 6163312 YP_001791242.1 CDS Lcho_2211 NC_010524.1 2411512 2413119 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2120 ABC transporter related; ABC transporter-like protein complement(2411512..2413119) Leptothrix cholodnii SP-6 6160976 YP_001791243.1 CDS Lcho_2212 NC_010524.1 2413143 2414135 R TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2119 rhamnose ABC transporter, periplasmic rhamnose-binding protein; rhamnose ABC transporter periplasmic rhamnose-binding protein complement(2413143..2414135) Leptothrix cholodnii SP-6 6160977 YP_001791244.1 CDS Lcho_2213 NC_010524.1 2414221 2415510 R TIGRFAM: L-rhamnose catabolism isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: vei:Veis_2116 L-rhamnose catabolism isomerase; L-rhamnose catabolism isomerase complement(2414221..2415510) Leptothrix cholodnii SP-6 6160978 YP_001791245.1 CDS Lcho_2214 NC_010524.1 2415537 2417660 R TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vei:Veis_2115 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; short chain dehydrogenase complement(2415537..2417660) Leptothrix cholodnii SP-6 6160979 YP_001791246.1 CDS Lcho_2215 NC_010524.1 2417835 2418779 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_2114 transcriptional regulator, LysR family; LysR family transcriptional regulator 2417835..2418779 Leptothrix cholodnii SP-6 6160980 YP_001791247.1 CDS Lcho_2216 NC_010524.1 2418828 2420123 R PFAM: peptidase M16 domain protein; KEGG: dac:Daci_3015 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(2418828..2420123) Leptothrix cholodnii SP-6 6160981 YP_001791248.1 CDS Lcho_2217 NC_010524.1 2420314 2421489 D PFAM: protein of unknown function DUF344; KEGG: reh:H16_A1212 hypothetical protein; hypothetical protein 2420314..2421489 Leptothrix cholodnii SP-6 6160982 YP_001791249.1 CDS Lcho_2218 NC_010524.1 2421525 2421809 D KEGG: rle:pRL70166 hypothetical protein; hypothetical protein 2421525..2421809 Leptothrix cholodnii SP-6 6160665 YP_001791250.1 CDS Lcho_2219 NC_010524.1 2421806 2422177 D KEGG: gsu:GSU0551 hypothetical protein; hypothetical protein 2421806..2422177 Leptothrix cholodnii SP-6 6160666 YP_001791251.1 CDS Lcho_2220 NC_010524.1 2422705 2423655 R PFAM: PfkB domain protein; KEGG: pfl:PFL_3076 fructokinase; ribokinase-like domain-containing protein complement(2422705..2423655) Leptothrix cholodnii SP-6 6160668 YP_001791252.1 CDS Lcho_2221 NC_010524.1 2423903 2424901 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pna:Pnap_2602 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator 2423903..2424901 Leptothrix cholodnii SP-6 6160669 YP_001791253.1 CDS Lcho_2222 NC_010524.1 2425094 2426053 D PFAM: inner-membrane translocator; KEGG: pna:Pnap_2604 inner-membrane translocator; monosaccharide-transporting ATPase 2425094..2426053 Leptothrix cholodnii SP-6 6160632 YP_001791254.1 CDS Lcho_2223 NC_010524.1 2426053 2426844 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2605 ABC transporter related; ABC transporter-like protein 2426053..2426844 Leptothrix cholodnii SP-6 6160633 YP_001791255.1 CDS Lcho_2224 NC_010524.1 2426928 2427398 D PFAM: RbsD or FucU transport; KEGG: pol:Bpro_3206 RbsD or FucU transport; transport protein RbsD/FucU 2426928..2427398 Leptothrix cholodnii SP-6 6160634 YP_001791256.1 CDS Lcho_2225 NC_010524.1 2427438 2428706 D PFAM: ROK family protein; KEGG: pol:Bpro_3207 hypothetical protein; ROK family protein 2427438..2428706 Leptothrix cholodnii SP-6 6160635 YP_001791257.1 CDS Lcho_2226 NC_010524.1 2428734 2432789 R KEGG: mpt:Mpe_A1374 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(2428734..2432789) Leptothrix cholodnii SP-6 6160636 YP_001791258.1 CDS Lcho_2227 NC_010524.1 2432833 2433216 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB1021 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2432833..2433216) Leptothrix cholodnii SP-6 6160637 YP_001791259.1 CDS Lcho_2228 NC_010524.1 2433337 2434677 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2433337..2434677 Leptothrix cholodnii SP-6 6160638 YP_001791260.1 CDS Lcho_2229 NC_010524.1 2434738 2435010 D PFAM: Fe(II) trafficking protein YggX; KEGG: mpt:Mpe_A1372 hypothetical protein; hypothetical protein 2434738..2435010 Leptothrix cholodnii SP-6 6163673 YP_001791261.1 CDS Lcho_2230 NC_010524.1 2435163 2435615 R KEGG: bvi:Bcep1808_7770 hypothetical protein; hypothetical protein complement(2435163..2435615) Leptothrix cholodnii SP-6 6163674 YP_001791262.1 CDS Lcho_2231 NC_010524.1 2435618 2435791 R hypothetical protein complement(2435618..2435791) Leptothrix cholodnii SP-6 6163675 YP_001791263.1 CDS Lcho_2232 NC_010524.1 2435945 2441692 R KEGG: bwe:BcerKBAB4_5440 hypothetical protein; Phage-like protein tail component-like protein complement(2435945..2441692) Leptothrix cholodnii SP-6 6163676 YP_001791264.1 CDS Lcho_2233 NC_010524.1 2441689 2442258 R KEGG: aba:Acid345_3158 hypothetical protein; hypothetical protein complement(2441689..2442258) Leptothrix cholodnii SP-6 6163677 YP_001791265.1 CDS Lcho_2234 NC_010524.1 2442255 2442881 R KEGG: pst:PSPTO_4044 hypothetical protein; hypothetical protein complement(2442255..2442881) Leptothrix cholodnii SP-6 6163678 YP_001791266.1 CDS Lcho_2235 NC_010524.1 2442889 2446230 R PFAM: Prophage tail length tape measure; KEGG: rso:RSc1690 probable phage HK97 tail length TAPE measure-related protein; prophage tail length tape measure complement(2442889..2446230) Leptothrix cholodnii SP-6 6163679 YP_001791267.1 CDS Lcho_2236 NC_010524.1 2446246 2446614 R PFAM: Protein of unknown function DUF1799 phage-related; KEGG: aav:Aave_1781 hypothetical protein; hypothetical protein complement(2446246..2446614) Leptothrix cholodnii SP-6 6162519 YP_001791268.1 CDS Lcho_2237 NC_010524.1 2446632 2446982 R hypothetical protein complement(2446632..2446982) Leptothrix cholodnii SP-6 6162520 YP_001791269.1 CDS Lcho_2238 NC_010524.1 2446993 2447958 R KEGG: rsq:Rsph17025_2092 hypothetical protein; hypothetical protein complement(2446993..2447958) Leptothrix cholodnii SP-6 6162521 YP_001791270.1 CDS Lcho_2239 NC_010524.1 2447997 2448215 R hypothetical protein complement(2447997..2448215) Leptothrix cholodnii SP-6 6162522 YP_001791271.1 CDS Lcho_2240 NC_010524.1 2448249 2448710 R hypothetical protein complement(2448249..2448710) Leptothrix cholodnii SP-6 6162523 YP_001791272.1 CDS Lcho_2241 NC_010524.1 2448707 2449120 R PFAM: protein of unknown function DUF1320; KEGG: pol:Bpro_3744 protein of unknown function DUF1320; hypothetical protein complement(2448707..2449120) Leptothrix cholodnii SP-6 6162524 YP_001791273.1 CDS Lcho_2242 NC_010524.1 2449130 2449348 R hypothetical protein complement(2449130..2449348) Leptothrix cholodnii SP-6 6162525 YP_001791274.1 CDS Lcho_2243 NC_010524.1 2449476 2450357 R KEGG: mag:amb1768 Mu-like prophage major head subunit gpT; Mu-like prophage major head subunit gpT complement(2449476..2450357) Leptothrix cholodnii SP-6 6163218 YP_001791275.1 CDS Lcho_2244 NC_010524.1 2450399 2450812 R KEGG: rsq:Rsph17025_2097 hypothetical protein; hypothetical protein complement(2450399..2450812) Leptothrix cholodnii SP-6 6163219 YP_001791276.1 CDS Lcho_2245 NC_010524.1 2450866 2451987 R KEGG: bvi:Bcep1808_1303 hypothetical protein; hypothetical protein complement(2450866..2451987) Leptothrix cholodnii SP-6 6163220 YP_001791277.1 CDS Lcho_2246 NC_010524.1 2452054 2452632 R hypothetical protein complement(2452054..2452632) Leptothrix cholodnii SP-6 6163221 YP_001791278.1 CDS Lcho_2247 NC_010524.1 2452638 2453393 R PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: pol:Bpro_3784 phage putative head morphogenesis protein, SPP1 gp7; putative head morphogenesis protein SPP1 gp7 complement(2452638..2453393) Leptothrix cholodnii SP-6 6163222 YP_001791279.1 CDS Lcho_2248 NC_010524.1 2453396 2455150 R PFAM: protein of unknown function DUF935; KEGG: bvi:Bcep1808_1306 protein of unknown function DUF935; hypothetical protein complement(2453396..2455150) Leptothrix cholodnii SP-6 6163223 YP_001791280.1 CDS Lcho_2249 NC_010524.1 2455308 2456990 R KEGG: pol:Bpro_3782 hypothetical protein; hypothetical protein complement(2455308..2456990) Leptothrix cholodnii SP-6 6163224 YP_001791281.1 CDS Lcho_2250 NC_010524.1 2456987 2457208 R hypothetical protein complement(2456987..2457208) Leptothrix cholodnii SP-6 6163251 YP_001791282.1 CDS Lcho_2251 NC_010524.1 2457205 2457777 R KEGG: stt:t1374 hypothetical protein; hypothetical protein complement(2457205..2457777) Leptothrix cholodnii SP-6 6163252 YP_001791283.1 CDS Lcho_2252 NC_010524.1 2457781 2458086 R KEGG: bbr:BB3634 hypothetical protein; hypothetical protein complement(2457781..2458086) Leptothrix cholodnii SP-6 6163253 YP_001791284.1 CDS Lcho_2253 NC_010524.1 2458083 2458436 R KEGG: bbr:BB3635 phage-related hypothetical protein; hypothetical protein complement(2458083..2458436) Leptothrix cholodnii SP-6 6163254 YP_001791285.1 CDS Lcho_2254 NC_010524.1 2458494 2458835 R hypothetical protein complement(2458494..2458835) Leptothrix cholodnii SP-6 6163255 YP_001791286.1 CDS Lcho_2255 NC_010524.1 2458858 2459877 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: par:Psyc_0447 possible RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase complement(2458858..2459877) Leptothrix cholodnii SP-6 6163256 YP_001791287.1 CDS Lcho_2256 NC_010524.1 2460143 2460568 R KEGG: par:Psyc_0448 hypothetical protein; hypothetical protein complement(2460143..2460568) Leptothrix cholodnii SP-6 6163257 YP_001791288.1 CDS Lcho_2257 NC_010524.1 2460605 2462149 R KEGG: par:Psyc_0449 hypothetical protein; hypothetical protein complement(2460605..2462149) Leptothrix cholodnii SP-6 6161245 YP_001791289.1 CDS Lcho_2258 NC_010524.1 2462149 2462454 R hypothetical protein complement(2462149..2462454) Leptothrix cholodnii SP-6 6161246 YP_001791290.1 CDS Lcho_2259 NC_010524.1 2462478 2462690 R hypothetical protein complement(2462478..2462690) Leptothrix cholodnii SP-6 6161247 YP_001791291.1 CDS Lcho_2260 NC_010524.1 2462687 2463175 R PFAM: Peptidase M15A; KEGG: bte:BTH_II1066 hypothetical protein; peptidase M15A complement(2462687..2463175) Leptothrix cholodnii SP-6 6161248 YP_001791292.1 CDS Lcho_2261 NC_010524.1 2463600 2464190 R KEGG: mms:mma_3471 hypothetical protein; hypothetical protein complement(2463600..2464190) Leptothrix cholodnii SP-6 6161249 YP_001791293.1 CDS Lcho_2262 NC_010524.1 2464198 2464989 R KEGG: sat:SYN_02332 hypothetical cytosolic protein; hypothetical protein complement(2464198..2464989) Leptothrix cholodnii SP-6 6161250 YP_001791294.1 CDS Lcho_2263 NC_010524.1 2465090 2465338 R hypothetical protein complement(2465090..2465338) Leptothrix cholodnii SP-6 6161251 YP_001791295.1 CDS Lcho_2264 NC_010524.1 2465399 2465725 R hypothetical protein complement(2465399..2465725) Leptothrix cholodnii SP-6 6163781 YP_001791296.1 CDS Lcho_2265 NC_010524.1 2465781 2466224 R KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family; hypothetical protein complement(2465781..2466224) Leptothrix cholodnii SP-6 6163782 YP_001791297.1 CDS Lcho_2266 NC_010524.1 2466681 2467154 D KEGG: cvi:CV_2151 hypothetical protein; hypothetical protein 2466681..2467154 Leptothrix cholodnii SP-6 6163783 YP_001791298.1 CDS Lcho_2267 NC_010524.1 2467211 2467702 D hypothetical protein 2467211..2467702 Leptothrix cholodnii SP-6 6163784 YP_001791299.1 CDS Lcho_2268 NC_010524.1 2467741 2468115 D hypothetical protein 2467741..2468115 Leptothrix cholodnii SP-6 6163785 YP_001791300.1 CDS Lcho_2269 NC_010524.1 2468115 2468381 D hypothetical protein 2468115..2468381 Leptothrix cholodnii SP-6 6163786 YP_001791301.1 CDS Lcho_2270 NC_010524.1 2468378 2468683 D PFAM: regulatory protein IclR; KEGG: mfa:Mfla_2714 hypothetical protein; IclR family transcriptional regulator 2468378..2468683 Leptothrix cholodnii SP-6 6163787 YP_001791302.1 CDS Lcho_2271 NC_010524.1 2468683 2468958 D hypothetical protein 2468683..2468958 Leptothrix cholodnii SP-6 6164074 YP_001791303.1 CDS Lcho_2272 NC_010524.1 2468955 2469971 D KEGG: hdu:HD1532 hypothetical protein; hypothetical protein 2468955..2469971 Leptothrix cholodnii SP-6 6164075 YP_001791304.1 CDS Lcho_2273 NC_010524.1 2470002 2471795 D KEGG: bbr:BB3647 hypothetical protein; hypothetical protein 2470002..2471795 Leptothrix cholodnii SP-6 6164076 YP_001791305.1 CDS Lcho_2274 NC_010524.1 2471838 2473136 D KEGG: sgl:SG0822 hypothetical protein; hypothetical protein 2471838..2473136 Leptothrix cholodnii SP-6 6164077 YP_001791306.1 CDS Lcho_2275 NC_010524.1 2473166 2473498 D hypothetical protein 2473166..2473498 Leptothrix cholodnii SP-6 6164078 YP_001791307.1 CDS Lcho_2276 NC_010524.1 2473498 2473827 D hypothetical protein 2473498..2473827 Leptothrix cholodnii SP-6 6164079 YP_001791308.1 CDS Lcho_2277 NC_010524.1 2473818 2474453 D KEGG: mfa:Mfla_2720 hypothetical protein; hypothetical protein 2473818..2474453 Leptothrix cholodnii SP-6 6164080 YP_001791309.1 CDS Lcho_2278 NC_010524.1 2474450 2474809 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: pol:Bpro_3758 hypothetical protein; helix-turn-helix type 11 domain-containing protein 2474450..2474809 Leptothrix cholodnii SP-6 6163136 YP_001791310.1 CDS Lcho_2279 NC_010524.1 2474848 2475033 D KEGG: bvi:Bcep1808_1319 hypothetical protein; hypothetical protein 2474848..2475033 Leptothrix cholodnii SP-6 6163137 YP_001791311.1 CDS Lcho_2280 NC_010524.1 2475079 2475378 D PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_4705 hypothetical protein; transposase IS3/IS911 family protein 2475079..2475378 Leptothrix cholodnii SP-6 6163138 YP_001791312.1 CDS Lcho_2281 NC_010524.1 2475375 2476262 D PFAM: Integrase catalytic region; KEGG: pol:Bpro_4706 integrase, catalytic region; integrase catalytic subunit 2475375..2476262 Leptothrix cholodnii SP-6 6163139 YP_001791313.1 CDS Lcho_2282 NC_010524.1 2476272 2476727 D KEGG: mfa:Mfla_2721 hypothetical protein; hypothetical protein 2476272..2476727 Leptothrix cholodnii SP-6 6163140 YP_001791314.1 CDS Lcho_2283 NC_010524.1 2476736 2476993 D hypothetical protein 2476736..2476993 Leptothrix cholodnii SP-6 6163141 YP_001791315.1 CDS Lcho_2284 NC_010524.1 2477202 2477678 D KEGG: eca:ECA3696 putative phage regluatory protein; putative phage regluatory protein 2477202..2477678 Leptothrix cholodnii SP-6 6163142 YP_001791316.1 CDS Lcho_2285 NC_010524.1 2477675 2478037 D PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_2165 probable bacteriophage transcriptional regulator; Mor transcription activator domain-containing protein 2477675..2478037 Leptothrix cholodnii SP-6 6161973 YP_001791317.1 CDS Lcho_2286 NC_010524.1 2478200 2478403 D KEGG: shm:Shewmr7_0731 hypothetical protein; hypothetical protein 2478200..2478403 Leptothrix cholodnii SP-6 6161974 YP_001791318.1 CDS Lcho_2287 NC_010524.1 2478548 2478748 D KEGG: son:SO_2678 hypothetical protein; hypothetical protein 2478548..2478748 Leptothrix cholodnii SP-6 6161975 YP_001791319.1 CDS Lcho_2288 NC_010524.1 2478751 2478960 D hypothetical protein 2478751..2478960 Leptothrix cholodnii SP-6 6161976 YP_001791320.1 CDS Lcho_2289 NC_010524.1 2479258 2480313 D PFAM: extracellular solute-binding protein family 1; KEGG: mpt:Mpe_A1371 putative iron binding protein component of ABC iron transporter; extracellular solute-binding protein 2479258..2480313 Leptothrix cholodnii SP-6 6161977 YP_001791321.1 CDS Lcho_2290 NC_010524.1 2480395 2480733 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: mpt:Mpe_A1370 putative HNS-like transcription regulator protein; histone family protein nucleoid-structuring protein H-NS 2480395..2480733 Leptothrix cholodnii SP-6 6161978 YP_001791322.1 CDS Lcho_2291 NC_010524.1 2480988 2481716 D PFAM: NLP/P60 protein; KEGG: mpt:Mpe_A2519 cell wall-associated hydrolase-like protein; NLP/P60 protein 2480988..2481716 Leptothrix cholodnii SP-6 6161979 YP_001791323.1 CDS Lcho_2292 NC_010524.1 2481783 2482928 D KEGG: pna:Pnap_1689 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 2481783..2482928 Leptothrix cholodnii SP-6 6160857 YP_001791324.1 CDS Lcho_2293 NC_010524.1 2482930 2483427 R KEGG: mpt:Mpe_A1571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2482930..2483427) Leptothrix cholodnii SP-6 6160858 YP_001791325.1 CDS Lcho_2294 NC_010524.1 2483446 2484573 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase complement(2483446..2484573) Leptothrix cholodnii SP-6 6160859 YP_001791326.1 CDS Lcho_2295 NC_010524.1 2485037 2485738 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: mpt:Mpe_A1570 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2485037..2485738) Leptothrix cholodnii SP-6 6160860 YP_001791327.1 CDS Lcho_2296 NC_010524.1 2485769 2486953 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: syn:sll1555 two-component hybrid histidine kinase; response regulator receiver sensor signal transduction histidine kinase complement(2485769..2486953) Leptothrix cholodnii SP-6 6160861 YP_001791328.1 CDS Lcho_2297 NC_010524.1 2486950 2487708 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gvi:glr3562 two-component sensor histidine kinase; histidine kinase complement(2486950..2487708) Leptothrix cholodnii SP-6 6160862 YP_001791329.1 CDS Lcho_2298 NC_010524.1 2488475 2493427 D PFAM: Hemolysin-type calcium-binding region; Animal haem peroxidase; KEGG: ppu:PP_2561 secreted hemolysin-type calcium-binding bacteriocin, putative; heme peroxidase 2488475..2493427 Leptothrix cholodnii SP-6 6160863 YP_001791330.1 CDS Lcho_2299 NC_010524.1 2493495 2495039 D PFAM: outer membrane efflux protein; KEGG: bam:Bamb_6370 type I secretion outer membrane protein, TolC family; outer membrane efflux protein 2493495..2495039 Leptothrix cholodnii SP-6 6163551 YP_001791331.1 CDS Lcho_2300 NC_010524.1 2495081 2497300 D KEGG: reh:H16_B0690 ABC-type RTX toxin transporter, ATPase and permease components: Prot1E family; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 2495081..2497300 Leptothrix cholodnii SP-6 6163552 YP_001791332.1 CDS Lcho_2301 NC_010524.1 2497300 2498706 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_1976 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 2497300..2498706 Leptothrix cholodnii SP-6 6163553 YP_001791333.1 CDS Lcho_2302 NC_010524.1 2498734 2500035 R KEGG: dac:Daci_5392 hypothetical protein; hypothetical protein complement(2498734..2500035) Leptothrix cholodnii SP-6 6163554 YP_001791334.1 CDS Lcho_2303 NC_010524.1 2500114 2501724 R PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE; hypothetical protein complement(2500114..2501724) Leptothrix cholodnii SP-6 6163555 YP_001791335.1 CDS Lcho_2304 NC_010524.1 2501825 2503339 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: mpt:Mpe_A3056 putative transmembrane protein; hypothetical protein complement(2501825..2503339) Leptothrix cholodnii SP-6 6163556 YP_001791336.1 CDS Lcho_2305 NC_010524.1 2503350 2503814 R PFAM: protein of unknown function DUF1468; KEGG: mpt:Mpe_A3057 hypothetical protein; hypothetical protein complement(2503350..2503814) Leptothrix cholodnii SP-6 6163557 YP_001791337.1 CDS Lcho_2306 NC_010524.1 2504182 2505270 R PFAM: Integrase catalytic region; KEGG: bpt:Bpet3733 putative transposase; integrase catalytic subunit complement(2504182..2505270) Leptothrix cholodnii SP-6 6162158 YP_001791338.1 CDS Lcho_2307 NC_010524.1 2505267 2505704 R KEGG: aav:Aave_4358 transposition helper protein; transposition helper protein complement(2505267..2505704) Leptothrix cholodnii SP-6 6162159 YP_001791339.1 CDS Lcho_2308 NC_010524.1 2505723 2507636 D PFAM: protein of unknown function DUF637 hemagglutinin putative; KEGG: nma:NMA0690 hypothetical protein; hypothetical protein 2505723..2507636 Leptothrix cholodnii SP-6 6162160 YP_001791340.1 CDS Lcho_2310 NC_010524.1 2508681 2510528 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A3058 general secretory pathway related protein; type II secretion system protein E complement(2508681..2510528) Leptothrix cholodnii SP-6 6162162 YP_001791341.1 CDS Lcho_2311 NC_010524.1 2510550 2511473 R KEGG: mpt:Mpe_A3059 spermidine synthase-like protein; spermidine synthase-like protein complement(2510550..2511473) Leptothrix cholodnii SP-6 6162163 YP_001791342.1 CDS Lcho_2312 NC_010524.1 2511470 2511997 R KEGG: rfr:Rfer_3216 hypothetical protein; hypothetical protein complement(2511470..2511997) Leptothrix cholodnii SP-6 6162164 YP_001791343.1 CDS Lcho_2313 NC_010524.1 2511994 2512842 R PFAM: TatD-related deoxyribonuclease; KEGG: vei:Veis_4583 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease complement(2511994..2512842) Leptothrix cholodnii SP-6 6161934 YP_001791344.1 CDS Lcho_2314 NC_010524.1 2513110 2513991 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aav:Aave_1064 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap 2513110..2513991 Leptothrix cholodnii SP-6 6161935 YP_001791345.1 CDS Lcho_2315 NC_010524.1 2514014 2515051 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pol:Bpro_3891 ATPase associated with various cellular activities, AAA_3; ATPase 2514014..2515051 Leptothrix cholodnii SP-6 6161936 YP_001791346.1 CDS Lcho_2316 NC_010524.1 2515117 2516373 D PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3892 protein of unknown function DUF58; hypothetical protein 2515117..2516373 Leptothrix cholodnii SP-6 6161937 YP_001791347.1 CDS Lcho_2317 NC_010524.1 2516370 2517422 D PFAM: von Willebrand factor type A; KEGG: pol:Bpro_3893 von Willebrand factor, type A; von Willebrand factor type A 2516370..2517422 Leptothrix cholodnii SP-6 6161938 YP_001791348.1 CDS Lcho_2318 NC_010524.1 2517564 2518100 D hypothetical protein 2517564..2518100 Leptothrix cholodnii SP-6 6161939 YP_001791349.1 CDS Lcho_2319 NC_010524.1 2518343 2519833 D KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 2518343..2519833 Leptothrix cholodnii SP-6 6161940 YP_001791350.1 CDS Lcho_2320 NC_010524.1 2519898 2521079 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4866 major facilitator superfamily MFS_1; major facilitator transporter 2519898..2521079 Leptothrix cholodnii SP-6 6163633 YP_001791351.1 CDS Lcho_2321 NC_010524.1 2521237 2521836 D KEGG: aav:Aave_3972 hypothetical protein; hypothetical protein 2521237..2521836 Leptothrix cholodnii SP-6 6163634 YP_001791352.1 CDS Lcho_2322 NC_010524.1 2521843 2522775 R PFAM: dienelactone hydrolase; KEGG: azo:azo2340 dienelactone hydrolase family protein; carboxymethylenebutenolidase complement(2521843..2522775) Leptothrix cholodnii SP-6 6163635 YP_001791353.1 CDS Lcho_2323 NC_010524.1 2522888 2524210 R KEGG: mpt:Mpe_A0606 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(2522888..2524210) Leptothrix cholodnii SP-6 6163636 YP_001791354.1 CDS Lcho_2324 NC_010524.1 2524416 2525021 R PFAM: protein of unknown function DUF1555; KEGG: dar:Daro_1502 protein of unknown function DUF1555; hypothetical protein complement(2524416..2525021) Leptothrix cholodnii SP-6 6163637 YP_001791355.1 CDS Lcho_2325 NC_010524.1 2525325 2525777 D KEGG: tbd:Tbd_0523 hypothetical protein; hypothetical protein 2525325..2525777 Leptothrix cholodnii SP-6 6163638 YP_001791356.1 CDS Lcho_2326 NC_010524.1 2525938 2526357 R KEGG: tbd:Tbd_0352 hypothetical protein; hypothetical protein complement(2525938..2526357) Leptothrix cholodnii SP-6 6163639 YP_001791357.1 CDS Lcho_2327 NC_010524.1 2526785 2527405 D KEGG: mfa:Mfla_1718 protein of unknown function DUF1555; hypothetical protein 2526785..2527405 Leptothrix cholodnii SP-6 6161107 YP_001791358.1 CDS Lcho_2328 NC_010524.1 2527692 2528237 D KEGG: dar:Daro_3745 protein of unknown function DUF1555; hypothetical protein 2527692..2528237 Leptothrix cholodnii SP-6 6161108 YP_001791359.1 CDS Lcho_2329 NC_010524.1 2528400 2528783 D PFAM: Endoribonuclease L-PSP; KEGG: xac:XAC1371 hypothetical protein; endoribonuclease L-PSP 2528400..2528783 Leptothrix cholodnii SP-6 6161109 YP_001791360.1 CDS Lcho_2330 NC_010524.1 2528818 2530383 R PFAM: protein of unknown function DUF1703; KEGG: eba:ebA5943 hypothetical protein; hypothetical protein complement(2528818..2530383) Leptothrix cholodnii SP-6 6161110 YP_001791361.1 CDS Lcho_2331 NC_010524.1 2530388 2530648 R KEGG: syn:ssl2065 hypothetical protein; hypothetical protein complement(2530388..2530648) Leptothrix cholodnii SP-6 6161111 YP_001791362.1 CDS Lcho_2332 NC_010524.1 2530841 2531227 D KEGG: cph:Cpha266_0766 DNA polymerase, beta domain protein region; DNA polymerase subunit beta 2530841..2531227 Leptothrix cholodnii SP-6 6161112 YP_001791363.1 CDS Lcho_2333 NC_010524.1 2531215 2531625 D PFAM: protein of unknown function DUF86; KEGG: cph:Cpha266_0768 protein of unknown function DUF86; hypothetical protein 2531215..2531625 Leptothrix cholodnii SP-6 6161113 YP_001791364.1 CDS Lcho_2334 NC_010524.1 2531650 2533221 R PFAM: protein of unknown function DUF1703; KEGG: eba:ebA5943 hypothetical protein; hypothetical protein complement(2531650..2533221) Leptothrix cholodnii SP-6 6160116 YP_001791365.1 CDS Lcho_2335 NC_010524.1 2533250 2534845 R PFAM: protein of unknown function DUF1703; KEGG: eba:ebA5943 hypothetical protein; hypothetical protein complement(2533250..2534845) Leptothrix cholodnii SP-6 6160117 YP_001791366.1 CDS Lcho_2336 NC_010524.1 2534874 2536457 R PFAM: protein of unknown function DUF1703; KEGG: eba:ebA5943 hypothetical protein; hypothetical protein complement(2534874..2536457) Leptothrix cholodnii SP-6 6160118 YP_001791367.1 CDS Lcho_2337 NC_010524.1 2536486 2538063 R PFAM: protein of unknown function DUF1703; KEGG: eba:ebA5943 hypothetical protein; hypothetical protein complement(2536486..2538063) Leptothrix cholodnii SP-6 6160119 YP_001791368.1 CDS Lcho_2338 NC_010524.1 2538296 2538778 D KEGG: mfa:Mfla_1132 protein of unknown function DUF1555; hypothetical protein 2538296..2538778 Leptothrix cholodnii SP-6 6160120 YP_001791369.1 CDS Lcho_2339 NC_010524.1 2539047 2539940 D KEGG: nmu:Nmul_A1261 hypothetical protein; hypothetical protein 2539047..2539940 Leptothrix cholodnii SP-6 6160121 YP_001791370.1 CDS Lcho_2340 NC_010524.1 2540058 2542754 R KEGG: rsp:RSP_4027 hypothetical protein with parallel beta-helix repeat; hypothetical protein complement(2540058..2542754) Leptothrix cholodnii SP-6 6160122 YP_001791371.1 CDS Lcho_2341 NC_010524.1 2543595 2544368 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: cpe:CPE0496 N-acetyl-mannosamine transferase; WecB/TagA/CpsF family glycosyl transferase complement(2543595..2544368) Leptothrix cholodnii SP-6 6159718 YP_001791372.1 CDS Lcho_2342 NC_010524.1 2544361 2545284 R PFAM: glycosyl transferase family 2; KEGG: bra:BRADO4817 putative glycosyltransferase (family 2); glycosyl transferase family protein complement(2544361..2545284) Leptothrix cholodnii SP-6 6159719 YP_001791373.1 CDS Lcho_2343 NC_010524.1 2545323 2546375 R PFAM: glycosyl transferase group 1; KEGG: mfa:Mfla_2015 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2545323..2546375) Leptothrix cholodnii SP-6 6159720 YP_001791374.1 CDS Lcho_2344 NC_010524.1 2546580 2547638 R PFAM: glycoside hydrolase family 5; KEGG: psa:PST_2494 endoglucanase precursor(endo-1,4-beta-glucanase)protein; glycoside hydrolase family protein complement(2546580..2547638) Leptothrix cholodnii SP-6 6159721 YP_001791375.1 CDS Lcho_2345 NC_010524.1 2547654 2548394 R PFAM: glycosyl transferase family 2; KEGG: gsu:GSU1961 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(2547654..2548394) Leptothrix cholodnii SP-6 6159722 YP_001791376.1 CDS Lcho_2346 NC_010524.1 2548426 2549871 R PFAM: O-antigen polymerase; KEGG: pol:Bpro_1889 O-antigen polymerase; O-antigen polymerase complement(2548426..2549871) Leptothrix cholodnii SP-6 6159723 YP_001791377.1 CDS Lcho_2347 NC_010524.1 2549931 2551430 R PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: mpt:Mpe_A1061 membrane protein; polysaccharide biosynthesis protein complement(2549931..2551430) Leptothrix cholodnii SP-6 6159724 YP_001791378.1 CDS Lcho_2348 NC_010524.1 2551519 2552934 R KEGG: mpt:Mpe_A0629 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(2551519..2552934) Leptothrix cholodnii SP-6 6159794 YP_001791379.1 CDS Lcho_2349 NC_010524.1 2552990 2554114 R TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpt:Mpe_A2731 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase complement(2552990..2554114) Leptothrix cholodnii SP-6 6159795 YP_001791380.1 CDS Lcho_2350 NC_010524.1 2554147 2555085 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH00763 GDP-L-fucose synthase protein; NAD-dependent epimerase/dehydratase complement(2554147..2555085) Leptothrix cholodnii SP-6 6159796 YP_001791381.1 CDS Lcho_2351 NC_010524.1 2555122 2555838 R TIGRFAM: EpsI family protein; KEGG: hch:HCH_03424 hypothetical protein; EpsI family protein complement(2555122..2555838) Leptothrix cholodnii SP-6 6159797 YP_001791382.1 CDS Lcho_2352 NC_010524.1 2555835 2556767 R TIGRFAM: eight transmembrane protein EpsH; exosortase 2; PFAM: Eight transmembrane protein EpsH; KEGG: nmu:Nmul_A0246 hypothetical protein; exosortase 2 complement(2555835..2556767) Leptothrix cholodnii SP-6 6159798 YP_001791383.1 CDS Lcho_2353 NC_010524.1 2556964 2557611 R hypothetical protein complement(2556964..2557611) Leptothrix cholodnii SP-6 6159799 YP_001791384.1 CDS Lcho_2354 NC_010524.1 2558225 2558497 D TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rso:RSc3225 hypothetical protein; CopG/Arc/MetJ family addiction module antidote protein 2558225..2558497 Leptothrix cholodnii SP-6 6159800 YP_001791385.1 CDS Lcho_2355 NC_010524.1 2558757 2559701 D KEGG: pol:Bpro_1568 hypothetical protein; hypothetical protein 2558757..2559701 Leptothrix cholodnii SP-6 6160013 YP_001791386.1 CDS Lcho_2356 NC_010524.1 2559778 2560554 D hypothetical protein 2559778..2560554 Leptothrix cholodnii SP-6 6160014 YP_001791387.1 CDS Lcho_2357 NC_010524.1 2560551 2561417 D hypothetical protein 2560551..2561417 Leptothrix cholodnii SP-6 6160015 YP_001791388.1 CDS Lcho_2358 NC_010524.1 2561417 2562742 D hypothetical protein 2561417..2562742 Leptothrix cholodnii SP-6 6160016 YP_001791389.1 CDS Lcho_2359 NC_010524.1 2562828 2563562 D hypothetical protein 2562828..2563562 Leptothrix cholodnii SP-6 6160017 YP_001791390.1 CDS Lcho_2360 NC_010524.1 2563727 2564875 D KEGG: tte:TTE0277 cellulose biosynthesis protein; cellulose biosynthesis protein CelD 2563727..2564875 Leptothrix cholodnii SP-6 6160018 YP_001791391.1 CDS Lcho_2361 NC_010524.1 2564908 2565483 R PFAM: protein of unknown function DUF820; KEGG: pna:Pnap_0294 protein of unknown function DUF820; hypothetical protein complement(2564908..2565483) Leptothrix cholodnii SP-6 6160019 YP_001791392.1 CDS Lcho_2362 NC_010524.1 2565641 2566807 D KEGG: pol:Bpro_4981 hypothetical protein; hypothetical protein 2565641..2566807 Leptothrix cholodnii SP-6 6159750 YP_001791393.1 CDS Lcho_2363 NC_010524.1 2566850 2568388 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mpt:Mpe_A0586 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2566850..2568388) Leptothrix cholodnii SP-6 6159751 YP_001791394.1 CDS Lcho_2364 NC_010524.1 2568468 2568950 R PFAM: Cache type 2 domain protein; KEGG: rpe:RPE_1803 cache, type 2; cache type 2 domain-containing protein complement(2568468..2568950) Leptothrix cholodnii SP-6 6159752 YP_001791395.1 CDS Lcho_2365 NC_010524.1 2569152 2570072 R TIGRFAM: capsular exopolysaccharide family; KEGG: mpt:Mpe_A2732 tyrosine kinase; exopolysaccharide tyrosine-protein kinase complement(2569152..2570072) Leptothrix cholodnii SP-6 6159753 YP_001791396.1 CDS Lcho_2366 NC_010524.1 2570116 2571534 R TIGRFAM: chain length determinant protein EpsF; PFAM: lipopolysaccharide biosynthesis protein; KEGG: mpt:Mpe_A2733 chain length determinant protein; chain length determinant protein EpsF complement(2570116..2571534) Leptothrix cholodnii SP-6 6159754 YP_001791397.1 CDS Lcho_2367 NC_010524.1 2571578 2572366 R TIGRFAM: polysaccharide export protein EpsE; PFAM: polysaccharide export protein; KEGG: mpt:Mpe_A2734 capsular polysaccharide export protein, putative; polysaccharide export protein EpsE complement(2571578..2572366) Leptothrix cholodnii SP-6 6159755 YP_001791398.1 CDS Lcho_2368 NC_010524.1 2572512 2573411 R TIGRFAM: peptidyl-prolyl cis-trans isomerase, EpsD family; KEGG: mpt:Mpe_A0738 hypothetical protein; peptidyl-prolyl cis-trans isomerase complement(2572512..2573411) Leptothrix cholodnii SP-6 6159756 YP_001791399.1 CDS Lcho_2369 NC_010524.1 2573667 2574509 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: azc:AZC_4534 transcriptional regulator; IclR family transcriptional regulator complement(2573667..2574509) Leptothrix cholodnii SP-6 6160039 YP_001791400.1 CDS Lcho_2370 NC_010524.1 2574687 2575865 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2574687..2575865 Leptothrix cholodnii SP-6 6160040 YP_001791401.1 CDS Lcho_2371 NC_010524.1 2575862 2577460 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2575862..2577460 Leptothrix cholodnii SP-6 6160041 YP_001791402.1 CDS Lcho_2372 NC_010524.1 2577503 2578519 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pnu:Pnuc_1539 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit Dctp 2577503..2578519 Leptothrix cholodnii SP-6 6160042 YP_001791403.1 CDS Lcho_2373 NC_010524.1 2578529 2580397 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vei:Veis_4815 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 2578529..2580397 Leptothrix cholodnii SP-6 6160043 YP_001791404.1 CDS Lcho_2374 NC_010524.1 2580402 2581271 R KEGG: bra:BRADO4016 hypothetical protein; hypothetical protein complement(2580402..2581271) Leptothrix cholodnii SP-6 6160044 YP_001791405.1 CDS Lcho_2375 NC_010524.1 2581298 2582095 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_0097 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2581298..2582095) Leptothrix cholodnii SP-6 6160045 YP_001791406.1 CDS Lcho_2376 NC_010524.1 2582208 2582921 D PFAM: protein of unknown function DUF28; KEGG: pna:Pnap_3561 protein of unknown function DUF28; hypothetical protein 2582208..2582921 Leptothrix cholodnii SP-6 6159930 YP_001791407.1 CDS Lcho_2377 NC_010524.1 2582940 2583824 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_4014 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2582940..2583824) Leptothrix cholodnii SP-6 6159931 YP_001791408.1 CDS Lcho_2378 NC_010524.1 2583974 2584957 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_4524 uncharacterized protein UPF0065; hypothetical protein 2583974..2584957 Leptothrix cholodnii SP-6 6159932 YP_001791409.1 CDS Lcho_2379 NC_010524.1 2584987 2586195 D KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2584987..2586195 Leptothrix cholodnii SP-6 6159933 YP_001791410.1 CDS Lcho_2380 NC_010524.1 2586470 2587756 D PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_4507 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 2586470..2587756 Leptothrix cholodnii SP-6 6159934 YP_001791411.1 CDS Lcho_2381 NC_010524.1 2587996 2588295 D PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_4705 hypothetical protein; transposase IS3/IS911 family protein 2587996..2588295 Leptothrix cholodnii SP-6 6160084 YP_001791412.1 CDS Lcho_2382 NC_010524.1 2588292 2589179 D PFAM: Integrase catalytic region; KEGG: pol:Bpro_4706 integrase, catalytic region; integrase catalytic subunit 2588292..2589179 Leptothrix cholodnii SP-6 6160085 YP_001791413.1 CDS Lcho_2383 NC_010524.1 2589074 2590357 R PFAM: integrase family protein; KEGG: rfr:Rfer_1354 phage integrase; integrase family protein complement(2589074..2590357) Leptothrix cholodnii SP-6 6160086 YP_001791414.1 CDS apaH NC_010524.1 2590698 2591519 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(2590698..2591519) Leptothrix cholodnii SP-6 6160088 YP_001791415.1 CDS Lcho_2385 NC_010524.1 2591582 2592883 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mpt:Mpe_A2853 CBS domain protein; hypothetical protein 2591582..2592883 Leptothrix cholodnii SP-6 6160089 YP_001791416.1 CDS Lcho_2386 NC_010524.1 2592880 2593674 D PFAM: SapC family protein; KEGG: pin:Ping_3347 SapC family protein; SapC family protein 2592880..2593674 Leptothrix cholodnii SP-6 6159905 YP_001791417.1 CDS Lcho_2387 NC_010524.1 2593723 2595267 R PFAM: protein of unknown function DUF1501; KEGG: aav:Aave_4705 protein of unknown function DUF1501; hypothetical protein complement(2593723..2595267) Leptothrix cholodnii SP-6 6159906 YP_001791418.1 CDS Lcho_2388 NC_010524.1 2595276 2597090 R PFAM: Protein of unknown function DUF1800; KEGG: aav:Aave_4704 hypothetical protein; hypothetical protein complement(2595276..2597090) Leptothrix cholodnii SP-6 6159907 YP_001791419.1 CDS Lcho_2389 NC_010524.1 2597241 2598269 R KEGG: dar:Daro_1192 putative poly-gamma-glutamate biosynthesis enzyme; putative poly-gamma-glutamate biosynthesis enzyme complement(2597241..2598269) Leptothrix cholodnii SP-6 6159908 YP_001791420.1 CDS Lcho_2390 NC_010524.1 2598266 2598694 R KEGG: dar:Daro_1193 hypothetical protein; hypothetical protein complement(2598266..2598694) Leptothrix cholodnii SP-6 6159909 YP_001791421.1 CDS Lcho_2391 NC_010524.1 2598739 2599233 R PFAM: cyclic nucleotide-binding; KEGG: afw:Anae109_3203 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(2598739..2599233) Leptothrix cholodnii SP-6 6159910 YP_001791422.1 CDS Lcho_2392 NC_010524.1 2599370 2600641 D KEGG: pen:PSEEN4336 hypothetical protein; hypothetical protein 2599370..2600641 Leptothrix cholodnii SP-6 6159911 YP_001791423.1 CDS Lcho_2393 NC_010524.1 2600711 2601520 D hypothetical protein 2600711..2601520 Leptothrix cholodnii SP-6 6160883 YP_001791424.1 CDS Lcho_2394 NC_010524.1 2601517 2602140 D KEGG: noc:Noc_0133 conserved hypothetical ATP binding protein; ATP-binding protein 2601517..2602140 Leptothrix cholodnii SP-6 6160884 YP_001791425.1 CDS Lcho_2395 NC_010524.1 2602204 2602725 D hypothetical protein 2602204..2602725 Leptothrix cholodnii SP-6 6160885 YP_001791426.1 CDS Lcho_2396 NC_010524.1 2602722 2603099 D KEGG: scl:sce1477 hypothetical protein; hypothetical protein 2602722..2603099 Leptothrix cholodnii SP-6 6160886 YP_001791427.1 CDS Lcho_2397 NC_010524.1 2603124 2603822 R KEGG: mpt:Mpe_A2747 putative lipoprotein releasing system ATP-binding ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(2603124..2603822) Leptothrix cholodnii SP-6 6160887 YP_001791428.1 CDS Lcho_2398 NC_010524.1 2603815 2605071 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A2748 putative lipoprotein releasing system transmembrane; LolC/E family lipoprotein releasing system, transmembrane protein complement(2603815..2605071) Leptothrix cholodnii SP-6 6160888 YP_001791429.1 CDS Lcho_2399 NC_010524.1 2605169 2606209 D KEGG: mpt:Mpe_A2750 conserved hypothetical signal peptide protein; putative signal peptide protein 2605169..2606209 Leptothrix cholodnii SP-6 6160889 YP_001791430.1 CDS Lcho_2400 NC_010524.1 2606211 2607950 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mpt:Mpe_A2751 putative single-stranded-DNA-specific exonuclease; single-stranded-DNA-specific exonuclease RecJ 2606211..2607950 Leptothrix cholodnii SP-6 6161412 YP_001791431.1 CDS Lcho_2401 NC_010524.1 2607987 2609144 R PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_3951 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2607987..2609144) Leptothrix cholodnii SP-6 6161413 YP_001791432.1 CDS Lcho_2402 NC_010524.1 2609195 2609812 R PFAM: regulatory protein TetR; KEGG: dac:Daci_0571 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2609195..2609812) Leptothrix cholodnii SP-6 6161414 YP_001791433.1 CDS Lcho_2403 NC_010524.1 2609844 2611154 R KEGG: dac:Daci_0570 phenylacetate-CoA ligase; TIGRFAM: phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; phenylacetate-CoA ligase complement(2609844..2611154) Leptothrix cholodnii SP-6 6161415 YP_001791434.1 CDS Lcho_2404 NC_010524.1 2611190 2611642 R TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: azo:azo0302 phenylacetic acid degradation protein PaaI; phenylacetic acid degradation protein PaaD complement(2611190..2611642) Leptothrix cholodnii SP-6 6161416 YP_001791435.1 CDS Lcho_2405 NC_010524.1 2611647 2612465 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_3942 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(2611647..2612465) Leptothrix cholodnii SP-6 6161417 YP_001791436.1 CDS Lcho_2406 NC_010524.1 2612601 2613227 D TIGRFAM: phenylacetic acid degradation protein PaaY; KEGG: mpt:Mpe_A0983 transferase; phenylacetic acid degradation protein PaaY 2612601..2613227 Leptothrix cholodnii SP-6 6161418 YP_001791437.1 CDS Lcho_2407 NC_010524.1 2613274 2614299 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_3197 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(2613274..2614299) Leptothrix cholodnii SP-6 6163409 YP_001791438.1 CDS Lcho_2408 NC_010524.1 2614400 2615203 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0058 ABC transporter related; ABC transporter-like protein complement(2614400..2615203) Leptothrix cholodnii SP-6 6163410 YP_001791439.1 CDS Lcho_2409 NC_010524.1 2615205 2616326 R PFAM: inner-membrane translocator; KEGG: vei:Veis_0059 inner-membrane translocator; monosaccharide-transporting ATPase complement(2615205..2616326) Leptothrix cholodnii SP-6 6163411 YP_001791440.1 CDS Lcho_2410 NC_010524.1 2616463 2617395 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_0060 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator complement(2616463..2617395) Leptothrix cholodnii SP-6 6163412 YP_001791441.1 CDS Lcho_2411 NC_010524.1 2617925 2618707 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mlr7629 hypothetical protein; xylose isomerase domain-containing protein 2617925..2618707 Leptothrix cholodnii SP-6 6163413 YP_001791442.1 CDS Lcho_2412 NC_010524.1 2618805 2619815 D PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: vei:Veis_0056 inositol 2-dehydrogenase; inositol 2-dehydrogenase 2618805..2619815 Leptothrix cholodnii SP-6 6163414 YP_001791443.1 CDS Lcho_2413 NC_010524.1 2619819 2620754 D PFAM: helix-turn-helix protein RpiR; KEGG: saq:Sare_3209 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 2619819..2620754 Leptothrix cholodnii SP-6 6163415 YP_001791444.1 CDS aroE NC_010524.1 2620851 2621684 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2620851..2621684 Leptothrix cholodnii SP-6 6163788 YP_001791445.1 CDS Lcho_2415 NC_010524.1 2621867 2622769 D KEGG: reh:H16_A2424 hypothetical protein; hypothetical protein 2621867..2622769 Leptothrix cholodnii SP-6 6163789 YP_001791446.1 CDS Lcho_2416 NC_010524.1 2622784 2623977 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A2423 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 2622784..2623977 Leptothrix cholodnii SP-6 6163790 YP_001791447.1 CDS Lcho_2417 NC_010524.1 2623979 2624794 D PFAM: HpcH/HpaI aldolase; KEGG: pna:Pnap_3810 HpcH/HpaI aldolase; HpcH/HpaI aldolase 2623979..2624794 Leptothrix cholodnii SP-6 6163791 YP_001791448.1 CDS Lcho_2418 NC_010524.1 2624832 2626178 D PFAM: fumarate lyase; KEGG: pna:Pnap_3811 fumarate lyase; fumarate lyase 2624832..2626178 Leptothrix cholodnii SP-6 6163792 YP_001791449.1 CDS Lcho_2419 NC_010524.1 2626274 2627416 D PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4297 PAS/PAC sensor signal transduction histidine kinase; histidine kinase 2626274..2627416 Leptothrix cholodnii SP-6 6163793 YP_001791450.1 CDS Lcho_2420 NC_010524.1 2627502 2628233 D PFAM: Glutathione S-transferase domain; KEGG: pol:Bpro_3007 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 2627502..2628233 Leptothrix cholodnii SP-6 6163794 YP_001791451.1 CDS Lcho_2421 NC_010524.1 2628250 2629188 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A2421 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(2628250..2629188) Leptothrix cholodnii SP-6 6164130 YP_001791452.1 CDS Lcho_2422 NC_010524.1 2629299 2631395 D PFAM: conserved hypothetical protein; protein of unknown function DUF453; KEGG: pol:Bpro_4551 protein of unknown function DUF453; hypothetical protein 2629299..2631395 Leptothrix cholodnii SP-6 6164131 YP_001791453.1 CDS Lcho_2423 NC_010524.1 2631433 2632506 D KEGG: dac:Daci_5627 porin, gram-negative type; porin 2631433..2632506 Leptothrix cholodnii SP-6 6164132 YP_001791454.1 CDS Lcho_2424 NC_010524.1 2632521 2633132 R PFAM: NIPSNAP family containing protein; KEGG: bja:bll3657 hypothetical protein; NIPSNAP family protein complement(2632521..2633132) Leptothrix cholodnii SP-6 6164133 YP_001791455.1 CDS Lcho_2425 NC_010524.1 2633272 2634069 R PFAM: Shikimate dehydrogenase substrate binding domain protein; KEGG: pna:Pnap_2706 shikimate dehydrogenase; shikimate dehydrogenase complement(2633272..2634069) Leptothrix cholodnii SP-6 6164134 YP_001791456.1 CDS Lcho_2426 NC_010524.1 2634187 2634996 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pna:Pnap_2705 regulatory proteins, IclR; IclR family transcriptional regulator 2634187..2634996 Leptothrix cholodnii SP-6 6164135 YP_001791457.1 CDS Lcho_2427 NC_010524.1 2635021 2636820 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_2701 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2635021..2636820 Leptothrix cholodnii SP-6 6164136 YP_001791458.1 CDS Lcho_2428 NC_010524.1 2636833 2637480 R PFAM: RES domain protein; KEGG: ajs:Ajs_1583 hypothetical protein; RES domain-containing protein complement(2636833..2637480) Leptothrix cholodnii SP-6 6161009 YP_001791459.1 CDS Lcho_2429 NC_010524.1 2637477 2638202 R KEGG: ajs:Ajs_1582 hypothetical protein; hypothetical protein complement(2637477..2638202) Leptothrix cholodnii SP-6 6161010 YP_001791460.1 CDS Lcho_2430 NC_010524.1 2638559 2640445 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2638559..2640445 Leptothrix cholodnii SP-6 6161011 YP_001791461.1 CDS Lcho_2431 NC_010524.1 2640456 2641559 D PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1609 thiamine biosynthesis oxidoreductase ThiO, putative; FAD dependent oxidoreductase 2640456..2641559 Leptothrix cholodnii SP-6 6161012 YP_001791462.1 CDS Lcho_2432 NC_010524.1 2641556 2641807 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: mpt:Mpe_A1608 sulfur transfer protein; thiamine biosynthesis protein ThiS 2641556..2641807 Leptothrix cholodnii SP-6 6161013 YP_001791463.1 CDS Lcho_2433 NC_010524.1 2641813 2642646 D PFAM: thiazole biosynthesis family protein; KEGG: mpt:Mpe_A1607 thiamine biosynthesis protein ThiG; thiazole biosynthesis family protein 2641813..2642646 Leptothrix cholodnii SP-6 6161014 YP_001791464.1 CDS Lcho_2434 NC_010524.1 2642668 2644509 D PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; KEGG: mpt:Mpe_A1606 phosphomethylpyrimidine kinase / thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase type-1 2642668..2644509 Leptothrix cholodnii SP-6 6163640 YP_001791465.1 CDS Lcho_2435 NC_010524.1 2644754 2645467 D KEGG: dar:Daro_0513 hypothetical protein; hypothetical protein 2644754..2645467 Leptothrix cholodnii SP-6 6163641 YP_001791466.1 CDS Lcho_2436 NC_010524.1 2645587 2646318 D PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A1045 putative transcription regulator protein; TetR family transcriptional regulator 2645587..2646318 Leptothrix cholodnii SP-6 6163642 YP_001791467.1 CDS Lcho_2437 NC_010524.1 2646474 2647127 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; KEGG: mpt:Mpe_A1042 putative L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 2646474..2647127 Leptothrix cholodnii SP-6 6163643 YP_001791468.1 CDS Lcho_2438 NC_010524.1 2647157 2647501 D SMART: Rhodanese domain protein; KEGG: bur:Bcep18194_A4015 rhodanese-related sulfurtransferase; rhodanese domain-containing protein 2647157..2647501 Leptothrix cholodnii SP-6 6163644 YP_001791469.1 CDS Lcho_2439 NC_010524.1 2647556 2648887 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mpt:Mpe_A1041 type I secretion outer membrane efflux protein; TolC family type I secretion outer membrane protein 2647556..2648887 Leptothrix cholodnii SP-6 6163645 YP_001791470.1 CDS Lcho_2440 NC_010524.1 2648900 2649991 R KEGG: mpt:Mpe_A3522 hypothetical protein; hypothetical protein complement(2648900..2649991) Leptothrix cholodnii SP-6 6163646 YP_001791471.1 CDS Lcho_2441 NC_010524.1 2650101 2650370 R PFAM: thiamineS protein; KEGG: ade:Adeh_2222 thiamineS; sulfur transfer protein ThisS complement(2650101..2650370) Leptothrix cholodnii SP-6 6161861 YP_001791472.1 CDS Lcho_2442 NC_010524.1 2650448 2651764 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: mpt:Mpe_A2140 putative 3-deoxy-D-manno-octulosonic-acid transferase transmembrane protein, gene; 3-deoxy-D-manno-octulosonic-acid transferase complement(2650448..2651764) Leptothrix cholodnii SP-6 6161862 YP_001791473.1 CDS Lcho_2443 NC_010524.1 2651779 2653197 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: mpt:Mpe_A2141 phosphomannomutase; phosphomannomutase complement(2651779..2653197) Leptothrix cholodnii SP-6 6161863 YP_001791474.1 CDS Lcho_2444 NC_010524.1 2653465 2653818 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: mpt:Mpe_A2816 HypA protein; hydrogenase nickel incorporation protein HypA 2653465..2653818 Leptothrix cholodnii SP-6 6161864 YP_001791475.1 CDS Lcho_2445 NC_010524.1 2653822 2654793 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: rme:Rmet_1285 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2653822..2654793 Leptothrix cholodnii SP-6 6161865 YP_001791476.1 CDS Lcho_2446 NC_010524.1 2654797 2655984 D KEGG: rme:Rmet_1284 hydrogenase maturation protein HypF; hydrogenase maturation protein HypF 2654797..2655984 Leptothrix cholodnii SP-6 6161866 YP_001791477.1 CDS Lcho_2447 NC_010524.1 2655987 2656250 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rme:Rmet_1283 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2655987..2656250 Leptothrix cholodnii SP-6 6161867 YP_001791478.1 CDS Lcho_2448 NC_010524.1 2656247 2657386 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: mpt:Mpe_A2812 HypD' protein; hydrogenase expression/formation protein HypD 2656247..2657386 Leptothrix cholodnii SP-6 6161641 YP_001791479.1 CDS Lcho_2449 NC_010524.1 2657383 2658438 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_1281 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2657383..2658438 Leptothrix cholodnii SP-6 6161642 YP_001791480.1 CDS Lcho_2450 NC_010524.1 2658464 2660236 D PFAM: Enoyl-CoA hydratase/isomerase; formyl transferase domain protein; KEGG: mpt:Mpe_A2809 putative sensor protein; formyl transferase domain-containing protein 2658464..2660236 Leptothrix cholodnii SP-6 6161643 YP_001791481.1 CDS Lcho_2451 NC_010524.1 2660289 2662829 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; KEGG: aha:AHA_2188 PAS; multi-sensor hybrid histidine kinase complement(2660289..2662829) Leptothrix cholodnii SP-6 6161644 YP_001791482.1 CDS Lcho_2452 NC_010524.1 2662846 2663979 R PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: aha:AHA_2190 response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; response regulator receiver modulated metal dependent phosphohydrolase complement(2662846..2663979) Leptothrix cholodnii SP-6 6161645 YP_001791483.1 CDS Lcho_2453 NC_010524.1 2664055 2664858 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_3272 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(2664055..2664858) Leptothrix cholodnii SP-6 6161646 YP_001791484.1 CDS Lcho_2454 NC_010524.1 2664994 2665857 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bpt:Bpet3943 2-hydroxyhepta-2,4-diene-1,7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(2664994..2665857) Leptothrix cholodnii SP-6 6161647 YP_001791485.1 CDS Lcho_2455 NC_010524.1 2665915 2666670 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpt:Bpet3944 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(2665915..2666670) Leptothrix cholodnii SP-6 6163344 YP_001791486.1 CDS Lcho_2456 NC_010524.1 2666727 2667926 R KEGG: aav:Aave_0753 hypothetical protein; hypothetical protein complement(2666727..2667926) Leptothrix cholodnii SP-6 6163345 YP_001791487.1 CDS Lcho_2457 NC_010524.1 2667980 2669761 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(2667980..2669761) Leptothrix cholodnii SP-6 6163346 YP_001791488.1 CDS Lcho_2458 NC_010524.1 2669833 2670843 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_0755 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit Dctp complement(2669833..2670843) Leptothrix cholodnii SP-6 6163347 YP_001791489.1 CDS Lcho_2459 NC_010524.1 2671031 2671963 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_0756 transcriptional regulator, LysR family; LysR family transcriptional regulator 2671031..2671963 Leptothrix cholodnii SP-6 6163348 YP_001791490.1 CDS Lcho_2460 NC_010524.1 2672009 2673592 R PFAM: Aldehyde Dehydrogenase_; KEGG: pap:PSPA7_3072 probable aldehyde dehydrogenase; aldehyde dehydrogenase complement(2672009..2673592) Leptothrix cholodnii SP-6 6163349 YP_001791491.1 CDS Lcho_2461 NC_010524.1 2673721 2674500 R catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA; methylmalonyl-CoA decarboxylase complement(2673721..2674500) Leptothrix cholodnii SP-6 6163350 YP_001791492.1 CDS Lcho_2462 NC_010524.1 2674577 2674939 R KEGG: rfr:Rfer_1396 hypothetical protein; hypothetical protein complement(2674577..2674939) Leptothrix cholodnii SP-6 6162555 YP_001791493.1 CDS Lcho_2463 NC_010524.1 2675065 2675523 R KEGG: pna:Pnap_3141 hypothetical protein; hypothetical protein complement(2675065..2675523) Leptothrix cholodnii SP-6 6162556 YP_001791494.1 CDS Lcho_2464 NC_010524.1 2675558 2677408 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pna:Pnap_3140 AAA ATPase, central domain protein; ATPase central domain-containing protein complement(2675558..2677408) Leptothrix cholodnii SP-6 6162557 YP_001791495.1 CDS Lcho_2465 NC_010524.1 2677422 2678132 R PFAM: PspA/IM30 family protein; KEGG: pna:Pnap_3139 phage shock protein A, PspA; phage shock protein A complement(2677422..2678132) Leptothrix cholodnii SP-6 6162558 YP_001791496.1 CDS Lcho_2466 NC_010524.1 2678191 2679069 R KEGG: pna:Pnap_3138 hypothetical protein; hypothetical protein complement(2678191..2679069) Leptothrix cholodnii SP-6 6162559 YP_001791497.1 CDS Lcho_2467 NC_010524.1 2679071 2680642 R PFAM: Peptidoglycan-binding domain 1 protein; extracellular solute-binding protein family 1; KEGG: pna:Pnap_3137 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(2679071..2680642) Leptothrix cholodnii SP-6 6162560 YP_001791498.1 CDS Lcho_2468 NC_010524.1 2680678 2681163 R KEGG: pna:Pnap_3136 hypothetical protein; hypothetical protein complement(2680678..2681163) Leptothrix cholodnii SP-6 6162561 YP_001791499.1 CDS Lcho_2469 NC_010524.1 2681168 2681830 R KEGG: pna:Pnap_3135 putative methyl-accepting chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer complement(2681168..2681830) Leptothrix cholodnii SP-6 6161868 YP_001791500.1 CDS Lcho_2470 NC_010524.1 2681950 2684109 R KEGG: azo:azo2712 GGDEF/PAS/PAC-domain containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(2681950..2684109) Leptothrix cholodnii SP-6 6161869 YP_001791501.1 CDS Lcho_2471 NC_010524.1 2684299 2689392 D PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: bpt:Bpet2661 hypothetical protein; alpha-2-macroglobulin domain-containing protein 2684299..2689392 Leptothrix cholodnii SP-6 6161870 YP_001791502.1 CDS Lcho_2472 NC_010524.1 2689389 2691788 D TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: bbr:BB2019 penicillin-binding protein; penicillin-binding protein 1C 2689389..2691788 Leptothrix cholodnii SP-6 6161871 YP_001791503.1 CDS Lcho_2473 NC_010524.1 2691834 2693030 R PFAM: cobalamin B12-binding domain protein; KEGG: scl:sce4024 putative cobalamin binding protein; cobalamin B12-binding domain-containing protein complement(2691834..2693030) Leptothrix cholodnii SP-6 6161872 YP_001791504.1 CDS Lcho_2474 NC_010524.1 2693194 2694534 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: mag:amb3335 predicted ferric reductase; ferric reductase domain-containing protein complement(2693194..2694534) Leptothrix cholodnii SP-6 6161873 YP_001791505.1 CDS Lcho_2475 NC_010524.1 2694687 2696105 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: psb:Psyr_2867 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; histidine kinase 2694687..2696105 Leptothrix cholodnii SP-6 6161874 YP_001791506.1 CDS Lcho_2476 NC_010524.1 2696102 2696827 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_2868 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator 2696102..2696827 Leptothrix cholodnii SP-6 6160462 YP_001791507.1 CDS Lcho_2477 NC_010524.1 2696875 2697852 R PFAM: PfkB domain protein; KEGG: pde:Pden_5059 PfkB domain protein; ribokinase-like domain-containing protein complement(2696875..2697852) Leptothrix cholodnii SP-6 6160463 YP_001791508.1 CDS Lcho_2478 NC_010524.1 2697989 2698867 D KEGG: dar:Daro_2806 hypothetical protein; hypothetical protein 2697989..2698867 Leptothrix cholodnii SP-6 6160464 YP_001791509.1 CDS Lcho_2479 NC_010524.1 2698768 2700084 R KEGG: acr:Acry_2734 glucose/sorbosone dehydrogenase-like protein; glucose/sorbosone dehydrogenase-like protein complement(2698768..2700084) Leptothrix cholodnii SP-6 6160465 YP_001791510.1 CDS Lcho_2480 NC_010524.1 2700285 2702825 D KEGG: dar:Daro_1441 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2700285..2702825 Leptothrix cholodnii SP-6 6160466 YP_001791511.1 CDS Lcho_2481 NC_010524.1 2702835 2703185 D hypothetical protein 2702835..2703185 Leptothrix cholodnii SP-6 6160467 YP_001791512.1 CDS Lcho_2482 NC_010524.1 2703221 2704678 R KEGG: lme:LEUM_1946 trypsin-like serine protease with PDZ domain; hypothetical protein complement(2703221..2704678) Leptothrix cholodnii SP-6 6160468 YP_001791513.1 CDS Lcho_2483 NC_010524.1 2704675 2705424 R hypothetical protein complement(2704675..2705424) Leptothrix cholodnii SP-6 6160645 YP_001791514.1 CDS Lcho_2484 NC_010524.1 2705479 2707080 R KEGG: pol:Bpro_3104 galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase complement(2705479..2707080) Leptothrix cholodnii SP-6 6160646 YP_001791515.1 CDS Lcho_2485 NC_010524.1 2707337 2708299 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4644 hypothetical protein; hypothetical protein 2707337..2708299 Leptothrix cholodnii SP-6 6160647 YP_001791516.1 CDS Lcho_2486 NC_010524.1 2708431 2709834 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: tbd:Tbd_0095 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 2708431..2709834 Leptothrix cholodnii SP-6 6160648 YP_001791517.1 CDS Lcho_2487 NC_010524.1 2709913 2710899 D PFAM: GTP-binding protein HSR1-related; KEGG: rfr:Rfer_1388 GTP-binding; GTP-binding protein HSR1-like 2709913..2710899 Leptothrix cholodnii SP-6 6160649 YP_001791518.1 CDS Lcho_2488 NC_010524.1 2711413 2712894 D KEGG: sus:Acid_3833 hypothetical protein; hypothetical protein 2711413..2712894 Leptothrix cholodnii SP-6 6160650 YP_001791519.1 CDS Lcho_2489 NC_010524.1 2712977 2713597 R PFAM: GTP cyclohydrolase II; KEGG: reu:Reut_B4241 GTP cyclohydrolase II; GTP cyclohydrolase II complement(2712977..2713597) Leptothrix cholodnii SP-6 6160651 YP_001791520.1 CDS Lcho_2490 NC_010524.1 2713824 2714486 D KEGG: rru:Rru_A1472 acetate CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2713824..2714486 Leptothrix cholodnii SP-6 6160983 YP_001791521.1 CDS Lcho_2491 NC_010524.1 2714479 2715138 D KEGG: rpc:RPC_2004 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2714479..2715138 Leptothrix cholodnii SP-6 6160984 YP_001791522.1 CDS Lcho_2492 NC_010524.1 2715226 2716071 D KEGG: aav:Aave_3997 hypothetical protein; hypothetical protein 2715226..2716071 Leptothrix cholodnii SP-6 6160985 YP_001791523.1 CDS Lcho_2493 NC_010524.1 2716068 2716592 D KEGG: ajs:Ajs_1688 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 2716068..2716592 Leptothrix cholodnii SP-6 6160986 YP_001791524.1 CDS Lcho_2494 NC_010524.1 2716597 2717061 R hypothetical protein complement(2716597..2717061) Leptothrix cholodnii SP-6 6160987 YP_001791525.1 CDS Lcho_2495 NC_010524.1 2717137 2717373 R hypothetical protein complement(2717137..2717373) Leptothrix cholodnii SP-6 6160988 YP_001791526.1 CDS Lcho_2496 NC_010524.1 2717456 2718373 R Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase complement(2717456..2718373) Leptothrix cholodnii SP-6 6160989 YP_001791527.1 CDS Lcho_2497 NC_010524.1 2718370 2719899 R catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase complement(2718370..2719899) Leptothrix cholodnii SP-6 6160676 YP_001791528.1 CDS Lcho_2498 NC_010524.1 2719936 2720721 R KEGG: mpt:Mpe_A1032 general secretion pathway protein B; general secretion pathway protein B complement(2719936..2720721) Leptothrix cholodnii SP-6 6160677 YP_001791529.1 CDS Lcho_2499 NC_010524.1 2720725 2722413 R PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A1031 general secretion pathway protein A; peptidoglycan-binding domain-containing protein complement(2720725..2722413) Leptothrix cholodnii SP-6 6160678 YP_001791530.1 CDS Lcho_2500 NC_010524.1 2722662 2722970 D PFAM: protein of unknown function DUF485; KEGG: pnu:Pnuc_0534 protein of unknown function DUF485; hypothetical protein 2722662..2722970 Leptothrix cholodnii SP-6 6160679 YP_001791531.1 CDS Lcho_2501 NC_010524.1 2722967 2724790 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pnu:Pnuc_0535 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter 2722967..2724790 Leptothrix cholodnii SP-6 6160680 YP_001791532.1 CDS Lcho_2502 NC_010524.1 2724957 2727830 D KEGG: dar:Daro_2754 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 2724957..2727830 Leptothrix cholodnii SP-6 6160681 YP_001791533.1 CDS Lcho_2503 NC_010524.1 2727805 2728461 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(2727805..2728461) Leptothrix cholodnii SP-6 6160682 YP_001791534.1 CDS Lcho_2504 NC_010524.1 2728458 2730296 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pna:Pnap_0480 cyclic nucleotide-binding protein; hypothetical protein complement(2728458..2730296) Leptothrix cholodnii SP-6 6162512 YP_001791535.1 CDS Lcho_2505 NC_010524.1 2730335 2732641 R KEGG: mpt:Mpe_A1812 DNA ligase (NAD+); TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(2730335..2732641) Leptothrix cholodnii SP-6 6162513 YP_001791536.1 CDS Lcho_2506 NC_010524.1 2732857 2733465 D hypothetical protein 2732857..2733465 Leptothrix cholodnii SP-6 6162514 YP_001791537.1 CDS Lcho_2507 NC_010524.1 2733490 2734533 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2733490..2734533) Leptothrix cholodnii SP-6 6162515 YP_001791538.1 CDS Lcho_2508 NC_010524.1 2734659 2736554 D KEGG: mpt:Mpe_A1948 hypothetical protein; hypothetical protein 2734659..2736554 Leptothrix cholodnii SP-6 6162516 YP_001791539.1 CDS Lcho_2509 NC_010524.1 2736586 2737083 R KEGG: cvi:CV_1325 probable thiol-disulfide isomerase and thioredoxin; putative thiol-disulfide isomerase and thioredoxin complement(2736586..2737083) Leptothrix cholodnii SP-6 6162517 YP_001791540.1 CDS Lcho_2510 NC_010524.1 2737168 2739534 R SMART: helicase c2; KEGG: mpt:Mpe_A0909 hypothetical protein; helicase c2 complement(2737168..2739534) Leptothrix cholodnii SP-6 6162518 YP_001791541.1 CDS Lcho_2511 NC_010524.1 2739540 2740289 R PFAM: beta-lactamase domain protein; KEGG: eba:ebA2905 hypothetical protein; beta-lactamase domain-containing protein complement(2739540..2740289) Leptothrix cholodnii SP-6 6161464 YP_001791542.1 CDS Lcho_2512 NC_010524.1 2740388 2740891 D PFAM: thioesterase superfamily protein; KEGG: pna:Pnap_1695 thioesterase superfamily protein; thioesterase superfamily protein 2740388..2740891 Leptothrix cholodnii SP-6 6161465 YP_001791543.1 CDS Lcho_2513 NC_010524.1 2740914 2742026 R SMART: ZipA FtsZ-binding region; KEGG: mpt:Mpe_A1811 hypothetical protein; ZipA FtsZ-binding region complement(2740914..2742026) Leptothrix cholodnii SP-6 6161466 YP_001791544.1 CDS Lcho_2514 NC_010524.1 2742085 2745597 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: mpt:Mpe_A1810 putative chromosome partition protein; chromosome segregation protein SMC complement(2742085..2745597) Leptothrix cholodnii SP-6 6161467 YP_001791545.1 CDS Lcho_2515 NC_010524.1 2745658 2746881 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 2745658..2746881 Leptothrix cholodnii SP-6 6161468 YP_001791546.1 CDS dapD NC_010524.1 2746932 2747756 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 2746932..2747756 Leptothrix cholodnii SP-6 6161469 YP_001791547.1 CDS Lcho_2517 NC_010524.1 2747788 2749002 D KEGG: mpt:Mpe_A1805 hypothetical protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 2747788..2749002 Leptothrix cholodnii SP-6 6161470 YP_001791548.1 CDS Lcho_2518 NC_010524.1 2749050 2750198 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2749050..2750198 Leptothrix cholodnii SP-6 6161483 YP_001791549.1 CDS Lcho_2519 NC_010524.1 2750195 2751154 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2750195..2751154 Leptothrix cholodnii SP-6 6161484 YP_001791550.1 CDS Lcho_2520 NC_010524.1 2751253 2751444 D KEGG: mpt:Mpe_A0440 hypothetical protein; hypothetical protein 2751253..2751444 Leptothrix cholodnii SP-6 6161485 YP_001791551.1 CDS Lcho_2521 NC_010524.1 2751508 2752620 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2751508..2752620) Leptothrix cholodnii SP-6 6161486 YP_001791552.1 CDS Lcho_2522 NC_010524.1 2752732 2752956 D PFAM: RNA-binding S4 domain protein; KEGG: bmu:Bmul_2211 hypothetical protein; RNA-binding S4 domain-containing protein 2752732..2752956 Leptothrix cholodnii SP-6 6161487 YP_001791553.1 CDS Lcho_2523 NC_010524.1 2753100 2754101 D PFAM: import inner membrane translocase subunit Tim44; KEGG: mpt:Mpe_A2192 hypothetical protein; import inner membrane translocase subunit Tim44 2753100..2754101 Leptothrix cholodnii SP-6 6161488 YP_001791554.1 CDS Lcho_2524 NC_010524.1 2754269 2754556 D hypothetical protein 2754269..2754556 Leptothrix cholodnii SP-6 6161489 YP_001791555.1 CDS Lcho_2525 NC_010524.1 2754556 2754957 D hypothetical protein 2754556..2754957 Leptothrix cholodnii SP-6 6163980 YP_001791556.1 CDS Lcho_2526 NC_010524.1 2755096 2755914 D PFAM: MscS Mechanosensitive ion channel; KEGG: mpt:Mpe_A0411 putative transmembrane protein; mechanosensitive ion channel protein MscS 2755096..2755914 Leptothrix cholodnii SP-6 6163981 YP_001791557.1 CDS Lcho_2527 NC_010524.1 2756282 2757790 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mfa:Mfla_1258 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase 2756282..2757790 Leptothrix cholodnii SP-6 6163982 YP_001791558.1 CDS Lcho_2528 NC_010524.1 2757873 2759300 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pna:Pnap_2739 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2757873..2759300) Leptothrix cholodnii SP-6 6163983 YP_001791559.1 CDS Lcho_2529 NC_010524.1 2759328 2760026 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pna:Pnap_2740 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2759328..2760026) Leptothrix cholodnii SP-6 6163984 YP_001791560.1 CDS Lcho_2530 NC_010524.1 2760101 2760649 R KEGG: pna:Pnap_2741 hypothetical protein; hypothetical protein complement(2760101..2760649) Leptothrix cholodnii SP-6 6163985 YP_001791561.1 CDS Lcho_2531 NC_010524.1 2760784 2761401 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: asa:ASA_2813 phosphatidylglycerophosphate synthase; CDP-alcohol phosphatidyltransferase complement(2760784..2761401) Leptothrix cholodnii SP-6 6163986 YP_001791562.1 CDS Lcho_2532 NC_010524.1 2761394 2762257 R KEGG: mpt:Mpe_A2958 hypothetical protein; hypothetical protein complement(2761394..2762257) Leptothrix cholodnii SP-6 6163163 YP_001791563.1 CDS Lcho_2533 NC_010524.1 2762254 2763183 R PFAM: protein of unknown function DUF692; KEGG: mpt:Mpe_A2959 hypothetical protein; hypothetical protein complement(2762254..2763183) Leptothrix cholodnii SP-6 6163164 YP_001791564.1 CDS Lcho_2534 NC_010524.1 2763208 2763495 R KEGG: mpt:Mpe_A2960 putative signal peptide protein; putative signal peptide protein complement(2763208..2763495) Leptothrix cholodnii SP-6 6163165 YP_001791565.1 CDS Lcho_2535 NC_010524.1 2763640 2764209 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2763640..2764209 Leptothrix cholodnii SP-6 6163166 YP_001791566.1 CDS Lcho_2536 NC_010524.1 2764215 2764409 D KEGG: pol:Bpro_4893 hypothetical protein; hypothetical protein 2764215..2764409 Leptothrix cholodnii SP-6 6163167 YP_001791567.1 CDS Lcho_2537 NC_010524.1 2764414 2765370 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(2764414..2765370) Leptothrix cholodnii SP-6 6163168 YP_001791568.1 CDS Lcho_2538 NC_010524.1 2765370 2767160 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2808 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2765370..2767160) Leptothrix cholodnii SP-6 6163169 YP_001791569.1 CDS Lcho_2539 NC_010524.1 2767281 2768207 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: mpt:Mpe_A1297 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha complement(2767281..2768207) Leptothrix cholodnii SP-6 6162549 YP_001791570.1 CDS Lcho_2540 NC_010524.1 2768210 2768959 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dac:Daci_2390 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit complement(2768210..2768959) Leptothrix cholodnii SP-6 6162550 YP_001791571.1 CDS Lcho_2541 NC_010524.1 2769149 2769967 D KEGG: mpt:Mpe_A1295 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 2769149..2769967 Leptothrix cholodnii SP-6 6162551 YP_001791572.1 CDS Lcho_2542 NC_010524.1 2770631 2773048 R KEGG: mpt:Mpe_A1294 endopeptidase La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(2770631..2773048) Leptothrix cholodnii SP-6 6162503 YP_001791573.1 CDS clpX NC_010524.1 2773167 2774441 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2773167..2774441) Leptothrix cholodnii SP-6 6162504 YP_001791574.1 CDS Lcho_2544 NC_010524.1 2774480 2775088 R KEGG: vei:Veis_4371 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP complement(2774480..2775088) Leptothrix cholodnii SP-6 6162165 YP_001791575.1 CDS tig NC_010524.1 2775259 2776566 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2775259..2776566) Leptothrix cholodnii SP-6 6162166 YP_001791576.1 CDS Lcho_2546 NC_010524.1 2776835 2779978 R PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A1290 putative transmembrane drug efflux protein; acriflavin resistance protein complement(2776835..2779978) Leptothrix cholodnii SP-6 6162168 YP_001791577.1 CDS Lcho_2547 NC_010524.1 2780010 2781191 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mpt:Mpe_A1289 putative transport/efflux transmembrane protein; RND family efflux transporter MFP subunit complement(2780010..2781191) Leptothrix cholodnii SP-6 6162169 YP_001791578.1 CDS Lcho_2548 NC_010524.1 2781333 2782163 D TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: mpt:Mpe_A1288 putative terpenoid synthase-related protein; squalene synthase 2781333..2782163 Leptothrix cholodnii SP-6 6162170 YP_001791579.1 CDS Lcho_2549 NC_010524.1 2782244 2783080 D TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: mpt:Mpe_A1287 putative phytoene synthase; squalene synthase 2782244..2783080 Leptothrix cholodnii SP-6 6163534 YP_001791580.1 CDS Lcho_2550 NC_010524.1 2783070 2784368 D TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1286 putative squalene/phytoene dehydrogenase; squalene-associated FAD-dependent desaturase 2783070..2784368 Leptothrix cholodnii SP-6 6163535 YP_001791581.1 CDS Lcho_2551 NC_010524.1 2784828 2785409 R PFAM: manganese and iron superoxide dismutase; KEGG: mpt:Mpe_A2481 superoxide dismutase; superoxide dismutase complement(2784828..2785409) Leptothrix cholodnii SP-6 6163536 YP_001791582.1 CDS Lcho_2552 NC_010524.1 2785561 2786859 R KEGG: mpt:Mpe_A2482 exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(2785561..2786859) Leptothrix cholodnii SP-6 6163537 YP_001791583.1 CDS Lcho_2553 NC_010524.1 2787315 2787893 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A2483 putative biopolymer transport ExbB-like transmembrane protein; MotA/TolQ/ExbB proton channel 2787315..2787893 Leptothrix cholodnii SP-6 6163538 YP_001791584.1 CDS Lcho_2554 NC_010524.1 2787890 2788315 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mpt:Mpe_A2484 putative biopolymer transport ExbD-related transmembrane protein; biopolymer transport protein ExbD/TolR 2787890..2788315 Leptothrix cholodnii SP-6 6163539 YP_001791585.1 CDS lpxK NC_010524.1 2788312 2789358 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2788312..2789358 Leptothrix cholodnii SP-6 6163540 YP_001791586.1 CDS Lcho_2556 NC_010524.1 2789410 2789613 D PFAM: protein of unknown function DUF343; KEGG: mpt:Mpe_A2486 hypothetical protein; hypothetical protein 2789410..2789613 Leptothrix cholodnii SP-6 6163156 YP_001791587.1 CDS Lcho_2557 NC_010524.1 2789610 2790425 D KEGG: mpt:Mpe_A2487 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2789610..2790425 Leptothrix cholodnii SP-6 6163157 YP_001791588.1 CDS adk NC_010524.1 2790611 2791264 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2790611..2791264 Leptothrix cholodnii SP-6 6163158 YP_001791589.1 CDS Lcho_2559 NC_010524.1 2791420 2792178 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A2489 putative short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2791420..2792178 Leptothrix cholodnii SP-6 6163159 YP_001791590.1 CDS Lcho_2560 NC_010524.1 2792237 2794036 D PFAM: gamma-glutamyltranspeptidase; KEGG: ajs:Ajs_1042 gamma-glutamyltransferase; gamma-glutamyltransferase 2792237..2794036 Leptothrix cholodnii SP-6 6163160 YP_001791591.1 CDS Lcho_2561 NC_010524.1 2794080 2795876 D KEGG: mpt:Mpe_A2490 putative DNA primase protein; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 2794080..2795876 Leptothrix cholodnii SP-6 6163161 YP_001791592.1 CDS Lcho_2562 NC_010524.1 2796202 2798466 D TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: mpt:Mpe_A2491 putative RNA polymerase sigma(sigma-70) factor transcription regulator protein; RNA polymerase sigma-70 subunit RpoD 2796202..2798466 Leptothrix cholodnii SP-6 6163162 YP_001791593.1 CDS Lcho_2563 NC_010524.1 2798595 2799527 D PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mpt:Mpe_A2492 adenylate cyclase family 3-like protein; adenylate/guanylate cyclase 2798595..2799527 Leptothrix cholodnii SP-6 6162982 YP_001791594.1 CDS Lcho_2564 NC_010524.1 2799546 2800241 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A2493 hydrolase; HAD family hydrolase complement(2799546..2800241) Leptothrix cholodnii SP-6 6162983 YP_001791595.1 CDS Lcho_2565 NC_010524.1 2800311 2801417 D PFAM: ferrochelatase; KEGG: mpt:Mpe_A2495 ferrochelatase; ferrochelatase 2800311..2801417 Leptothrix cholodnii SP-6 6162984 YP_001791596.1 CDS Lcho_2566 NC_010524.1 2801463 2802386 R PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0134 porin, gram-negative type; porin complement(2801463..2802386) Leptothrix cholodnii SP-6 6162985 YP_001791597.1 CDS Lcho_2567 NC_010524.1 2802569 2804056 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_3009 protein of unknown function DUF112, transmembrane; hypothetical protein complement(2802569..2804056) Leptothrix cholodnii SP-6 6162986 YP_001791598.1 CDS Lcho_2568 NC_010524.1 2804056 2804550 R KEGG: pna:Pnap_1235 hypothetical protein; hypothetical protein complement(2804056..2804550) Leptothrix cholodnii SP-6 6162987 YP_001791599.1 CDS Lcho_2569 NC_010524.1 2804552 2805511 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065; hypothetical protein complement(2804552..2805511) Leptothrix cholodnii SP-6 6162988 YP_001791600.1 CDS Lcho_2570 NC_010524.1 2805636 2806304 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2008 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2805636..2806304 Leptothrix cholodnii SP-6 6162505 YP_001791601.1 CDS Lcho_2571 NC_010524.1 2806319 2807788 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: pna:Pnap_1232 integral membrane sensor signal transduction histidine kinase; histidine kinase 2806319..2807788 Leptothrix cholodnii SP-6 6162506 YP_001791602.1 CDS Lcho_2572 NC_010524.1 2807785 2808246 D PFAM: RNA-binding S4 domain protein; KEGG: aav:Aave_2419 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 2807785..2808246 Leptothrix cholodnii SP-6 6162507 YP_001791603.1 CDS Lcho_2573 NC_010524.1 2808293 2809864 R KEGG: rfr:Rfer_1228 hypothetical protein; hypothetical protein complement(2808293..2809864) Leptothrix cholodnii SP-6 6162508 YP_001791604.1 CDS Lcho_2574 NC_010524.1 2809913 2810812 R KEGG: rfr:Rfer_1584 hypothetical protein; hypothetical protein complement(2809913..2810812) Leptothrix cholodnii SP-6 6162509 YP_001791605.1 CDS Lcho_2575 NC_010524.1 2811002 2811547 D PFAM: GrpE protein; KEGG: mpt:Mpe_A2497 putative heat shock protein; GrpE protein HSP-70 cofactor 2811002..2811547 Leptothrix cholodnii SP-6 6162510 YP_001791606.1 CDS dnaK NC_010524.1 2811673 2813613 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2811673..2813613 Leptothrix cholodnii SP-6 6162511 YP_001791607.1 CDS Lcho_2577 NC_010524.1 2813742 2814899 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2813742..2814899 Leptothrix cholodnii SP-6 6162254 YP_001791608.1 CDS Lcho_2578 NC_010524.1 2815038 2816771 D PFAM: response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: rfr:Rfer_1420 response regulator receiver domain protein; response regulator receiver protein 2815038..2816771 Leptothrix cholodnii SP-6 6162255 YP_001791609.1 CDS Lcho_2579 NC_010524.1 2816708 2817985 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pau:PA14_05820 putative acyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F complement(2816708..2817985) Leptothrix cholodnii SP-6 6162256 YP_001791610.1 CDS Lcho_2580 NC_010524.1 2818194 2819198 D PFAM: extracellular solute-binding protein family 3; KEGG: azo:azo2228 conserved hypothetical amino acid-binding protein; extracellular solute-binding protein 2818194..2819198 Leptothrix cholodnii SP-6 6162257 YP_001791611.1 CDS Lcho_2581 NC_010524.1 2819195 2822395 D KEGG: azo:azo2227 GGDEF/EAL/PAS-domain containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2819195..2822395 Leptothrix cholodnii SP-6 6162258 YP_001791612.1 CDS Lcho_2582 NC_010524.1 2822441 2823337 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: mpt:Mpe_A2756 hypothetical protein; phosphotransferase domain-containing protein 2822441..2823337 Leptothrix cholodnii SP-6 6162259 YP_001791613.1 CDS Lcho_2583 NC_010524.1 2823375 2824307 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein; hypothetical protein 2823375..2824307 Leptothrix cholodnii SP-6 6162260 YP_001791614.1 CDS Lcho_2584 NC_010524.1 2824376 2825002 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: mpt:Mpe_A2757 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein 2824376..2825002 Leptothrix cholodnii SP-6 6163070 YP_001791615.1 CDS Lcho_2585 NC_010524.1 2825026 2825526 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bur:Bcep18194_A5889 hypothetical protein; ybaK/ebsC protein 2825026..2825526 Leptothrix cholodnii SP-6 6163071 YP_001791616.1 CDS Lcho_2586 NC_010524.1 2825576 2826367 D PFAM: protein of unknown function DUF205; KEGG: mpt:Mpe_A2760 putative transmembrane protein; hypothetical protein 2825576..2826367 Leptothrix cholodnii SP-6 6163072 YP_001791617.1 CDS Lcho_2587 NC_010524.1 2826439 2826825 D PFAM: glutaredoxin; glutaredoxin 2826439..2826825 Leptothrix cholodnii SP-6 6163073 YP_001791618.1 CDS Lcho_2588 NC_010524.1 2826856 2827914 R PFAM: aldo/keto reductase; KEGG: pna:Pnap_1076 aldo/keto reductase; aldo/keto reductase complement(2826856..2827914) Leptothrix cholodnii SP-6 6163074 YP_001791619.1 CDS Lcho_2589 NC_010524.1 2828193 2829320 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_3005 response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; response regulator receiver modulated metal dependent phosphohydrolase 2828193..2829320 Leptothrix cholodnii SP-6 6163075 YP_001791620.1 CDS Lcho_2590 NC_010524.1 2829378 2835257 D KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 2829378..2835257 Leptothrix cholodnii SP-6 6163076 YP_001791621.1 CDS Lcho_2591 NC_010524.1 2835284 2837971 R PFAM: multicopper oxidase type 2; KEGG: pen:PSEEN2124 hypothetical protein; multicopper oxidase type 2 complement(2835284..2837971) Leptothrix cholodnii SP-6 6163558 YP_001791622.1 CDS Lcho_2592 NC_010524.1 2838693 2839889 R PFAM: Extracellular ligand-binding receptor; KEGG: har:HEAR0738 putative amino acid ABC transporter; extracellular ligand-binding receptor complement(2838693..2839889) Leptothrix cholodnii SP-6 6163560 YP_001791623.1 CDS Lcho_2593 NC_010524.1 2840085 2840534 R hypothetical protein complement(2840085..2840534) Leptothrix cholodnii SP-6 6163561 YP_001791624.1 CDS Lcho_2594 NC_010524.1 2840543 2840980 R PFAM: DNA polymerase III chi subunit HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit HolC complement(2840543..2840980) Leptothrix cholodnii SP-6 6163562 YP_001791625.1 CDS Lcho_2595 NC_010524.1 2840989 2842449 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: mpt:Mpe_A1942 leucyl aminopeptidase; leucyl aminopeptidase complement(2840989..2842449) Leptothrix cholodnii SP-6 6163563 YP_001791626.1 CDS Lcho_2596 NC_010524.1 2842477 2843571 D PFAM: permease YjgP/YjgQ family protein; KEGG: mpt:Mpe_A1943 putative transmembrane protein; YjgP/YjgQ family permease 2842477..2843571 Leptothrix cholodnii SP-6 6163509 YP_001791627.1 CDS Lcho_2597 NC_010524.1 2843584 2844690 D PFAM: permease YjgP/YjgQ family protein; KEGG: mpt:Mpe_A1944 hypothetical protein; YjgP/YjgQ family permease 2843584..2844690 Leptothrix cholodnii SP-6 6163510 YP_001791628.1 CDS Lcho_2598 NC_010524.1 2844702 2845097 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mpt:Mpe_A1945 hypothetical protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2844702..2845097 Leptothrix cholodnii SP-6 6163511 YP_001791629.1 CDS Lcho_2599 NC_010524.1 2845094 2846059 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A1946 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein 2845094..2846059 Leptothrix cholodnii SP-6 6163512 YP_001791630.1 CDS Lcho_2600 NC_010524.1 2846104 2847294 D PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A1947 putative pyridoxal phosphate aminotransferase protein; class I/II aminotransferase 2846104..2847294 Leptothrix cholodnii SP-6 6163513 YP_001791631.1 CDS Lcho_2601 NC_010524.1 2847325 2848170 R hypothetical protein complement(2847325..2848170) Leptothrix cholodnii SP-6 6163514 YP_001791632.1 CDS Lcho_2602 NC_010524.1 2848228 2848923 D PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A1954 putative GST-related protein; glutathione S-transferase domain-containing protein 2848228..2848923 Leptothrix cholodnii SP-6 6163515 YP_001791633.1 CDS Lcho_2603 NC_010524.1 2848924 2850177 R PFAM: transglutaminase domain protein; KEGG: bmu:Bmul_4112 transglutaminase domain protein; transglutaminase domain-containing protein complement(2848924..2850177) Leptothrix cholodnii SP-6 6162892 YP_001791634.1 CDS Lcho_2604 NC_010524.1 2850174 2852981 R PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bte:BTH_II1918 u1937b; B1937_F1_4; hypothetical protein complement(2850174..2852981) Leptothrix cholodnii SP-6 6162893 YP_001791635.1 CDS Lcho_2605 NC_010524.1 2853060 2856584 R PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: mpt:Mpe_A2553 transglutaminase-like superfamily protein; transglutaminase domain-containing protein complement(2853060..2856584) Leptothrix cholodnii SP-6 6162894 YP_001791636.1 CDS Lcho_2606 NC_010524.1 2856691 2857650 R PFAM: protein of unknown function DUF403; KEGG: mpt:Mpe_A2549 hypothetical protein; hypothetical protein complement(2856691..2857650) Leptothrix cholodnii SP-6 6162895 YP_001791637.1 CDS Lcho_2607 NC_010524.1 2857655 2859088 R PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: mpt:Mpe_A2550 hypothetical protein; hypothetical protein complement(2857655..2859088) Leptothrix cholodnii SP-6 6162896 YP_001791638.1 CDS Lcho_2608 NC_010524.1 2859085 2861586 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: mpt:Mpe_A2554 putative transporter DNA uptake transmembrane protein; DNA internalization-like competence protein ComEC/Rec2 complement(2859085..2861586) Leptothrix cholodnii SP-6 6162897 YP_001791639.1 CDS Lcho_2609 NC_010524.1 2861774 2862232 D PFAM: Endoribonuclease L-PSP; KEGG: mpt:Mpe_A2555 hypothetical protein; endoribonuclease L-PSP 2861774..2862232 Leptothrix cholodnii SP-6 6162898 YP_001791640.1 CDS Lcho_2610 NC_010524.1 2862303 2862800 D PFAM: Disulphide bond formation protein DsbB; KEGG: bbr:BB2601 disulfide bond formation protein B; disulfide bond formation protein DsbB 2862303..2862800 Leptothrix cholodnii SP-6 6162770 YP_001791641.1 CDS Lcho_2611 NC_010524.1 2863039 2863794 D PFAM: Lytic transglycosylase catalytic; KEGG: reh:H16_A0991 putative transglycosylase; lytic transglycosylase catalytic subunit 2863039..2863794 Leptothrix cholodnii SP-6 6162771 YP_001791642.1 CDS Lcho_2612 NC_010524.1 2863849 2864310 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rso:RSc2310 putative GspG-related transmembrane protein; general secretion pathway protein G 2863849..2864310 Leptothrix cholodnii SP-6 6162772 YP_001791643.1 CDS Lcho_2613 NC_010524.1 2864359 2865507 D PFAM: type II secretion system protein; KEGG: rme:Rmet_4712 type II secretion system protein; type II secretion system protein 2864359..2865507 Leptothrix cholodnii SP-6 6162773 YP_001791644.1 CDS Lcho_2614 NC_010524.1 2865511 2867253 D PFAM: type II secretion system protein E; KEGG: rme:Rmet_4711 type II secretion system protein E; type II secretion system protein E 2865511..2867253 Leptothrix cholodnii SP-6 6162774 YP_001791645.1 CDS Lcho_2615 NC_010524.1 2867231 2868001 D hypothetical protein 2867231..2868001 Leptothrix cholodnii SP-6 6162775 YP_001791646.1 CDS Lcho_2616 NC_010524.1 2867998 2868603 D KEGG: pfo:Pfl_1984 fimbrial assembly; fimbrial assembly 2867998..2868603 Leptothrix cholodnii SP-6 6162776 YP_001791647.1 CDS Lcho_2617 NC_010524.1 2868600 2869181 D KEGG: rso:RSc2305 probable transmembrane protein; putative transmembrane protein 2868600..2869181 Leptothrix cholodnii SP-6 6162989 YP_001791648.1 CDS Lcho_2618 NC_010524.1 2869237 2869830 D KEGG: rso:RSc2304 putative proline rich transmembrane protein; hypothetical protein 2869237..2869830 Leptothrix cholodnii SP-6 6162990 YP_001791649.1 CDS Lcho_2619 NC_010524.1 2869827 2871815 D PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2303 probable GspD-related protein; type II and III secretion system protein 2869827..2871815 Leptothrix cholodnii SP-6 6162991 YP_001791650.1 CDS Lcho_2620 NC_010524.1 2871835 2872314 D KEGG: rso:RS02978 putative general secretion pathway GspG related transmembrane protein; putative general secretion pathway GspG related transmembrane protein 2871835..2872314 Leptothrix cholodnii SP-6 6162992 YP_001791651.1 CDS Lcho_2621 NC_010524.1 2872308 2872862 D PFAM: type II secretion system protein G; KEGG: rme:Rmet_4704 secretory pathway pseudopilin PulG; type II secretion system protein G 2872308..2872862 Leptothrix cholodnii SP-6 6162993 YP_001791652.1 CDS Lcho_2622 NC_010524.1 2872895 2873461 D KEGG: mfa:Mfla_2411 hypothetical protein; hypothetical protein 2872895..2873461 Leptothrix cholodnii SP-6 6162994 YP_001791653.1 CDS Lcho_2623 NC_010524.1 2873350 2874909 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pna:Pnap_1536 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2873350..2874909) Leptothrix cholodnii SP-6 6162995 YP_001791654.1 CDS Lcho_2624 NC_010524.1 2874913 2875632 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pna:Pnap_1535 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2874913..2875632) Leptothrix cholodnii SP-6 6164007 YP_001791655.1 CDS Lcho_2625 NC_010524.1 2875853 2880562 R KEGG: neu:NE0315 possible multicopper oxidase; putative multicopper oxidase complement(2875853..2880562) Leptothrix cholodnii SP-6 6164008 YP_001791656.1 CDS Lcho_2626 NC_010524.1 2880999 2882978 D KEGG: ppf:Pput_2282 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 2880999..2882978 Leptothrix cholodnii SP-6 6164009 YP_001791657.1 CDS Lcho_2627 NC_010524.1 2883016 2884293 D PFAM: electron transport protein SCO1/SenC; KEGG: pfo:Pfl_1977 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 2883016..2884293 Leptothrix cholodnii SP-6 6164010 YP_001791658.1 CDS Lcho_2628 NC_010524.1 2884293 2885948 D KEGG: pfo:Pfl_1979 cytochrome c, putative; cytochrome c 2884293..2885948 Leptothrix cholodnii SP-6 6164011 YP_001791659.1 CDS Lcho_2629 NC_010524.1 2886577 2887989 D KEGG: ppf:Pput_2366 hypothetical protein; hypothetical protein 2886577..2887989 Leptothrix cholodnii SP-6 6164012 YP_001791660.1 CDS Lcho_2630 NC_010524.1 2888006 2890483 D PFAM: Fibronectin type III domain protein; KEGG: gsu:GSU1844 IPT/TIG domain protein, putative; fibronectin type III domain-containing protein 2888006..2890483 Leptothrix cholodnii SP-6 6164013 YP_001791661.1 CDS Lcho_2631 NC_010524.1 2890678 2891007 D hypothetical protein 2890678..2891007 Leptothrix cholodnii SP-6 6160969 YP_001791662.1 CDS Lcho_2632 NC_010524.1 2891010 2893334 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(2891010..2893334) Leptothrix cholodnii SP-6 6160970 YP_001791663.1 CDS Lcho_2633 NC_010524.1 2893408 2893935 R hypothetical protein complement(2893408..2893935) Leptothrix cholodnii SP-6 6160971 YP_001791664.1 CDS Lcho_2634 NC_010524.1 2893994 2894809 R PFAM: OmpA/MotB domain protein; KEGG: rpd:RPD_1877 OmpA/MotB; OmpA/MotB domain-containing protein complement(2893994..2894809) Leptothrix cholodnii SP-6 6160972 YP_001791665.1 CDS Lcho_2635 NC_010524.1 2895186 2897162 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(2895186..2897162) Leptothrix cholodnii SP-6 6160973 YP_001791666.1 CDS Lcho_2636 NC_010524.1 2897352 2898074 D KEGG: tcx:Tcr_0046 hypothetical protein; hypothetical protein 2897352..2898074 Leptothrix cholodnii SP-6 6160974 YP_001791667.1 CDS Lcho_2637 NC_010524.1 2898158 2899402 D PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A2560 putative MFS transporter; major facilitator transporter 2898158..2899402 Leptothrix cholodnii SP-6 6160975 YP_001791668.1 CDS Lcho_2638 NC_010524.1 2899412 2899543 D hypothetical protein 2899412..2899543 Leptothrix cholodnii SP-6 6160917 YP_001791669.1 CDS Lcho_2639 NC_010524.1 2899559 2900146 D PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: rso:RSc1144 hypothetical protein; type 11 methyltransferase 2899559..2900146 Leptothrix cholodnii SP-6 6160918 YP_001791670.1 CDS Lcho_2640 NC_010524.1 2900205 2901086 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2900205..2901086 Leptothrix cholodnii SP-6 6160919 YP_001791671.1 CDS Lcho_2641 NC_010524.1 2901209 2902405 D PFAM: NlpBDapX family lipoprotein; KEGG: mpt:Mpe_A2564 putative transmembrane protein; NlpB/DapX family lipoprotein 2901209..2902405 Leptothrix cholodnii SP-6 6160920 YP_001791672.1 CDS Lcho_2642 NC_010524.1 2902943 2904199 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: mpt:Mpe_A2568 hypothetical protein; cupin 4 family protein complement(2902943..2904199) Leptothrix cholodnii SP-6 6160921 YP_001791673.1 CDS Lcho_2643 NC_010524.1 2904258 2904791 D KEGG: mpt:Mpe_A2569 putative FkbP-type peptidyl-prolyl cis-trans isomerase; putative FkbP-type peptidyl-prolyl cis-trans isomerase 2904258..2904791 Leptothrix cholodnii SP-6 6160922 YP_001791674.1 CDS Lcho_2644 NC_010524.1 2904831 2905283 R KEGG: mpt:Mpe_A2570 dUTP diphosphatase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(2904831..2905283) Leptothrix cholodnii SP-6 6160923 YP_001791675.1 CDS Lcho_2645 NC_010524.1 2905298 2906557 R KEGG: mpt:Mpe_A2571 putative DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(2905298..2906557) Leptothrix cholodnii SP-6 6161165 YP_001791676.1 CDS Lcho_2646 NC_010524.1 2906719 2909091 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo1830 putative TonB-denpendent receptor; TonB-dependent receptor plug 2906719..2909091 Leptothrix cholodnii SP-6 6161166 YP_001791677.1 CDS Lcho_2647 NC_010524.1 2909098 2910312 R PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_4891 Rh-like protein/ammonium transporter; Rh family protein/ammonium transporter complement(2909098..2910312) Leptothrix cholodnii SP-6 6161167 YP_001791678.1 CDS Lcho_2648 NC_010524.1 2910729 2912168 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mpt:Mpe_A2088 putative ATP-dependent RNA helicase 1; DEAD/DEAH box helicase 2910729..2912168 Leptothrix cholodnii SP-6 6161168 YP_001791679.1 CDS Lcho_2649 NC_010524.1 2912212 2912715 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2912212..2912715) Leptothrix cholodnii SP-6 6161169 YP_001791680.1 CDS Lcho_2650 NC_010524.1 2913112 2913585 R KEGG: tcr:508175.329 60S ribosomal protein L19; 50S ribosomal protein L19 complement(2913112..2913585) Leptothrix cholodnii SP-6 6161170 YP_001791681.1 CDS Lcho_2651 NC_010524.1 2913681 2914544 R KEGG: mpt:Mpe_A2091 hypothetical protein; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; procollagen-proline dioxygenase complement(2913681..2914544) Leptothrix cholodnii SP-6 6161171 YP_001791682.1 CDS Lcho_2652 NC_010524.1 2914610 2915383 R PFAM: protein of unknown function DUF328; KEGG: pna:Pnap_3166 protein of unknown function DUF328; hypothetical protein complement(2914610..2915383) Leptothrix cholodnii SP-6 6162796 YP_001791683.1 CDS Lcho_2653 NC_010524.1 2915445 2915873 D KEGG: bpt:Bpet3332 hypothetical protein; hypothetical protein 2915445..2915873 Leptothrix cholodnii SP-6 6162797 YP_001791684.1 CDS Lcho_2654 NC_010524.1 2915874 2916428 R hypothetical protein complement(2915874..2916428) Leptothrix cholodnii SP-6 6162798 YP_001791685.1 CDS Lcho_2655 NC_010524.1 2916592 2917230 D KEGG: mpt:Mpe_A2297 putative endonuclease III protein; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III 2916592..2917230 Leptothrix cholodnii SP-6 6162799 YP_001791686.1 CDS Lcho_2656 NC_010524.1 2917241 2918050 R PFAM: periplasmic binding protein; KEGG: pol:Bpro_2784 periplasmic binding protein; periplasmic-binding protein complement(2917241..2918050) Leptothrix cholodnii SP-6 6162800 YP_001791687.1 CDS Lcho_2657 NC_010524.1 2918068 2918463 R KEGG: pol:Bpro_1578 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase complement(2918068..2918463) Leptothrix cholodnii SP-6 6162801 YP_001791688.1 CDS Lcho_2658 NC_010524.1 2918474 2919124 R PFAM: Phosphoglycerate mutase; KEGG: mpt:Mpe_A2301 fructose-2,6-biphosphatase; phosphoglycerate mutase complement(2918474..2919124) Leptothrix cholodnii SP-6 6162802 YP_001791689.1 CDS Lcho_2659 NC_010524.1 2919117 2919911 R TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: mpt:Mpe_A2302 cobalamin-5-phosphate synthase; cobalamin 5'-phosphate synthase complement(2919117..2919911) Leptothrix cholodnii SP-6 6162005 YP_001791690.1 CDS Lcho_2660 NC_010524.1 2919911 2920990 R KEGG: dac:Daci_2816 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2919911..2920990) Leptothrix cholodnii SP-6 6162006 YP_001791691.1 CDS Lcho_2661 NC_010524.1 2921041 2922582 R TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mpt:Mpe_A2304 cobyric acid synthase; cobyric acid synthase CobQ complement(2921041..2922582) Leptothrix cholodnii SP-6 6162007 YP_001791692.1 CDS Lcho_2662 NC_010524.1 2922598 2923395 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2305 ferric-citrate ABC transporter ATPase; ABC transporter-like protein complement(2922598..2923395) Leptothrix cholodnii SP-6 6162008 YP_001791693.1 CDS Lcho_2663 NC_010524.1 2923392 2924399 R PFAM: transport system permease protein; KEGG: mpt:Mpe_A2306 iron(III) dicitrate-binding protein; transport system permease complement(2923392..2924399) Leptothrix cholodnii SP-6 6162009 YP_001791694.1 CDS Lcho_2664 NC_010524.1 2924396 2925307 R PFAM: periplasmic binding protein; KEGG: mpt:Mpe_A2307 iron(III) dicitrate-binding protein; periplasmic-binding protein complement(2924396..2925307) Leptothrix cholodnii SP-6 6162010 YP_001791695.1 CDS Lcho_2665 NC_010524.1 2925304 2925879 R PFAM: cobalbumin biosynthesis protein; KEGG: mpt:Mpe_A2308 adenosyl cobinamide kinase (cobalamin-5-phosphate synthase); cobalbumin biosynthesis protein complement(2925304..2925879) Leptothrix cholodnii SP-6 6162011 YP_001791696.1 CDS Lcho_2666 NC_010524.1 2925891 2927807 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpt:Mpe_A2309 TonB-dependent outer membrane cobalamin receptor; TonB-dependent receptor complement(2925891..2927807) Leptothrix cholodnii SP-6 6161842 YP_001791697.1 CDS Lcho_2667 NC_010524.1 2928208 2928435 D KEGG: mpt:Mpe_A2310 hypothetical protein; hypothetical protein 2928208..2928435 Leptothrix cholodnii SP-6 6161843 YP_001791698.1 CDS Lcho_2668 NC_010524.1 2928432 2928758 D PFAM: protein of unknown function DUF710; KEGG: mpt:Mpe_A2311 hypothetical protein; hypothetical protein 2928432..2928758 Leptothrix cholodnii SP-6 6161844 YP_001791699.1 CDS Lcho_2669 NC_010524.1 2929036 2929509 D PFAM: protein of unknown function DUF55; KEGG: bvi:Bcep1808_2542 protein of unknown function DUF55; hypothetical protein 2929036..2929509 Leptothrix cholodnii SP-6 6161846 YP_001791700.1 CDS Lcho_2670 NC_010524.1 2929506 2930318 D PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_2628 protein of unknown function DUF81; hypothetical protein 2929506..2930318 Leptothrix cholodnii SP-6 6161847 YP_001791701.1 CDS Lcho_2671 NC_010524.1 2930325 2931311 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: mpt:Mpe_A2313 GGDEF domain containing protein; diguanylate cyclase complement(2930325..2931311) Leptothrix cholodnii SP-6 6162853 YP_001791702.1 CDS Lcho_2672 NC_010524.1 2931385 2931963 R KEGG: pol:Bpro_3714 hypothetical protein; hypothetical protein complement(2931385..2931963) Leptothrix cholodnii SP-6 6162854 YP_001791703.1 CDS Lcho_2673 NC_010524.1 2931985 2933349 R KEGG: mpt:Mpe_A2097 putative ferredoxin; putative ferredoxin complement(2931985..2933349) Leptothrix cholodnii SP-6 6162855 YP_001791704.1 CDS Lcho_2674 NC_010524.1 2933452 2933871 R PFAM: Rubrerythrin; KEGG: mpt:Mpe_A2098 putative oxidative stress related rubrerythrin protein; rubrerythrin complement(2933452..2933871) Leptothrix cholodnii SP-6 6162856 YP_001791705.1 CDS Lcho_2675 NC_010524.1 2934050 2935201 R PFAM: ANTAR domain protein; KEGG: pol:Bpro_3275 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein complement(2934050..2935201) Leptothrix cholodnii SP-6 6162857 YP_001791706.1 CDS Lcho_2676 NC_010524.1 2935702 2936958 D PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A2315 nitrate transporter; major facilitator transporter 2935702..2936958 Leptothrix cholodnii SP-6 6162858 YP_001791707.1 CDS Lcho_2677 NC_010524.1 2937024 2938766 R PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: mpt:Mpe_A2316 putative serine/threonine protein kinase; protein serine/threonine phosphatase complement(2937024..2938766) Leptothrix cholodnii SP-6 6162859 YP_001791708.1 CDS Lcho_2678 NC_010524.1 2938910 2941375 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mpt:Mpe_A2317 nitrite reductase (NAD(P)H), large subunit; nitrite reductase (NAD(P)H) large subunit 2938910..2941375 Leptothrix cholodnii SP-6 6162840 YP_001791709.1 CDS Lcho_2679 NC_010524.1 2941408 2941764 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2558 nitrite reductase (NAD(P)H) large subunit, NirD; nitrite reductase (NAD(P)H) small subunit 2941408..2941764 Leptothrix cholodnii SP-6 6162841 YP_001791710.1 CDS Lcho_2680 NC_010524.1 2941827 2944628 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mpt:Mpe_A2319 putative nitrate reductase; molybdopterin oxidoreductase 2941827..2944628 Leptothrix cholodnii SP-6 6162842 YP_001791711.1 CDS Lcho_2681 NC_010524.1 2944785 2946119 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: azo:azo0447 transcriptional regulatory protein; two component sigma-54 specific Fis family transcriptional regulator complement(2944785..2946119) Leptothrix cholodnii SP-6 6162843 YP_001791712.1 CDS Lcho_2682 NC_010524.1 2946116 2948023 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: azo:azo0448 sensor histidine kinase; histidine kinase complement(2946116..2948023) Leptothrix cholodnii SP-6 6162844 YP_001791713.1 CDS Lcho_2683 NC_010524.1 2948020 2948148 R hypothetical protein complement(2948020..2948148) Leptothrix cholodnii SP-6 6162845 YP_001791714.1 CDS Lcho_2684 NC_010524.1 2948203 2953047 R PFAM: NAD-glutamate dehydrogenase; KEGG: pol:Bpro_3020 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase complement(2948203..2953047) Leptothrix cholodnii SP-6 6162846 YP_001791715.1 CDS Lcho_2685 NC_010524.1 2953631 2954365 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0446 putative polar amino acid transport system ATP-binding protein; ABC transporter-like protein complement(2953631..2954365) Leptothrix cholodnii SP-6 6162666 YP_001791716.1 CDS Lcho_2686 NC_010524.1 2954378 2955043 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A0445 amino acid permease; polar amino acid ABC transporter inner membrane subunit complement(2954378..2955043) Leptothrix cholodnii SP-6 6162667 YP_001791717.1 CDS Lcho_2687 NC_010524.1 2955040 2955783 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A0444 putative ABC transporter protein, putative glutamate/aspartate transmembrane subunit; polar amino acid ABC transporter inner membrane subunit complement(2955040..2955783) Leptothrix cholodnii SP-6 6162668 YP_001791718.1 CDS Lcho_2688 NC_010524.1 2955871 2956773 R PFAM: extracellular solute-binding protein family 3; KEGG: vei:Veis_1219 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(2955871..2956773) Leptothrix cholodnii SP-6 6162669 YP_001791719.1 CDS Lcho_2689 NC_010524.1 2956805 2957875 R KEGG: azo:azo0438 periplasmic L-asparaginase II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; L-asparaginase complement(2956805..2957875) Leptothrix cholodnii SP-6 6162670 YP_001791720.1 CDS Lcho_2690 NC_010524.1 2958275 2959204 D PFAM: glycosyl transferase family 3; KEGG: mpt:Mpe_A2320 hypothetical protein; glycosyl transferase family protein 2958275..2959204 Leptothrix cholodnii SP-6 6162671 YP_001791721.1 CDS prpE NC_010524.1 2959304 2961202 R catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase complement(2959304..2961202) Leptothrix cholodnii SP-6 6162672 YP_001791722.1 CDS Lcho_2692 NC_010524.1 2961297 2961758 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A1018 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2961297..2961758) Leptothrix cholodnii SP-6 6162370 YP_001791723.1 CDS Lcho_2693 NC_010524.1 2961779 2963854 R PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ajs:Ajs_2043 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding complement(2961779..2963854) Leptothrix cholodnii SP-6 6162371 YP_001791724.1 CDS Lcho_2694 NC_010524.1 2963875 2965407 R PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase; carboxyl transferase complement(2963875..2965407) Leptothrix cholodnii SP-6 6162372 YP_001791725.1 CDS Lcho_2695 NC_010524.1 2965468 2966523 R functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase complement(2965468..2966523) Leptothrix cholodnii SP-6 6162373 YP_001791726.1 CDS Lcho_2696 NC_010524.1 2966516 2966989 R PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C7224 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2966516..2966989) Leptothrix cholodnii SP-6 6162374 YP_001791727.1 CDS Lcho_2697 NC_010524.1 2967036 2969198 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(2967036..2969198) Leptothrix cholodnii SP-6 6162375 YP_001791728.1 CDS Lcho_2698 NC_010524.1 2969235 2969933 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pna:Pnap_2384 transcriptional regulator, GntR family; GntR family transcriptional regulator 2969235..2969933 Leptothrix cholodnii SP-6 6162376 YP_001791729.1 CDS Lcho_2699 NC_010524.1 2970048 2971208 D KEGG: pna:Pnap_3953 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase subunit beta 2970048..2971208 Leptothrix cholodnii SP-6 6162319 YP_001791730.1 CDS Lcho_2700 NC_010524.1 2971226 2972119 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 2971226..2972119 Leptothrix cholodnii SP-6 6162320 YP_001791731.1 CDS gltA NC_010524.1 2972288 2973601 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(2972288..2973601) Leptothrix cholodnii SP-6 6162321 YP_001791732.1 CDS Lcho_2702 NC_010524.1 2973669 2973944 R PFAM: protein of unknown function DUF339; KEGG: mpt:Mpe_A2166 hypothetical protein; hypothetical protein complement(2973669..2973944) Leptothrix cholodnii SP-6 6162322 YP_001791733.1 CDS Lcho_2703 NC_010524.1 2973976 2974680 R TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: mpt:Mpe_A2167 succinate dehydrogenase (ubiquinone); succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(2973976..2974680) Leptothrix cholodnii SP-6 6162323 YP_001791734.1 CDS Lcho_2704 NC_010524.1 2974699 2976507 R KEGG: mpt:Mpe_A2168 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase, flavoprotein subunit complement(2974699..2976507) Leptothrix cholodnii SP-6 6162324 YP_001791735.1 CDS Lcho_2705 NC_010524.1 2976507 2976869 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: mpt:Mpe_A2169 transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein; succinate dehydrogenase, hydrophobic membrane anchor protein complement(2976507..2976869) Leptothrix cholodnii SP-6 6162325 YP_001791736.1 CDS Lcho_2706 NC_010524.1 2976907 2977335 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: mpt:Mpe_A2170 putative succinate dehydrogenase cytochrome b-556 subunit; succinate dehydrogenase, cytochrome b556 subunit complement(2976907..2977335) Leptothrix cholodnii SP-6 6162312 YP_001791737.1 CDS Lcho_2707 NC_010524.1 2977429 2978208 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mpt:Mpe_A2171 putative transcription regulator protein; GntR family transcriptional regulator complement(2977429..2978208) Leptothrix cholodnii SP-6 6162313 YP_001791738.1 CDS Lcho_2708 NC_010524.1 2978431 2979417 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 2978431..2979417 Leptothrix cholodnii SP-6 6162314 YP_001791739.1 CDS Lcho_2709 NC_010524.1 2979544 2980596 D KEGG: mpt:Mpe_A2173 putative lyase; putative lyase 2979544..2980596 Leptothrix cholodnii SP-6 6162315 YP_001791740.1 CDS Lcho_2710 NC_010524.1 2980807 2981247 D KEGG: mpt:Mpe_A1366 putative signal peptide protein; putative signal peptide protein 2980807..2981247 Leptothrix cholodnii SP-6 6162316 YP_001791741.1 CDS Lcho_2711 NC_010524.1 2981459 2984050 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2981459..2984050 Leptothrix cholodnii SP-6 6162317 YP_001791742.1 CDS Lcho_2712 NC_010524.1 2984145 2985056 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(2984145..2985056) Leptothrix cholodnii SP-6 6162318 YP_001791743.1 CDS sbcB NC_010524.1 2985219 2986673 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(2985219..2986673) Leptothrix cholodnii SP-6 6160890 YP_001791744.1 CDS Lcho_2714 NC_010524.1 2986728 2987954 R KEGG: mpt:Mpe_A1064 hypothetical protein; hypothetical protein complement(2986728..2987954) Leptothrix cholodnii SP-6 6160891 YP_001791745.1 CDS Lcho_2715 NC_010524.1 2987983 2989377 R TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative; undecaprenyl-phosphate glucose phosphotransferase complement(2987983..2989377) Leptothrix cholodnii SP-6 6160892 YP_001791746.1 CDS Lcho_2716 NC_010524.1 2989534 2991444 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mpt:Mpe_A2856 GGDEF domain containing protein; diguanylate cyclase complement(2989534..2991444) Leptothrix cholodnii SP-6 6160893 YP_001791747.1 CDS Lcho_2717 NC_010524.1 2991560 2993722 R KEGG: mpt:Mpe_A2857 sensory box/response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase complement(2991560..2993722) Leptothrix cholodnii SP-6 6160894 YP_001791748.1 CDS Lcho_2718 NC_010524.1 2993732 2997499 R KEGG: mpt:Mpe_A2858 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(2993732..2997499) Leptothrix cholodnii SP-6 6160895 YP_001791749.1 CDS Lcho_2719 NC_010524.1 2997834 2999183 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A2859 bacteriophytochrome-like protein; histidine kinase 2997834..2999183 Leptothrix cholodnii SP-6 6160896 YP_001791750.1 CDS Lcho_2720 NC_010524.1 2999225 3000355 R KEGG: ade:Adeh_2645 cellulose biosynthesis (CelD)-like protein; hypothetical protein complement(2999225..3000355) Leptothrix cholodnii SP-6 6160611 YP_001791751.1 CDS Lcho_2721 NC_010524.1 3000367 3000972 R PFAM: response regulator receiver; KEGG: mpt:Mpe_A2860 response regulator; response regulator receiver protein complement(3000367..3000972) Leptothrix cholodnii SP-6 6160612 YP_001791752.1 CDS Lcho_2722 NC_010524.1 3001061 3003997 R KEGG: mpt:Mpe_A2861 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative signal transduction histidine kinase complement(3001061..3003997) Leptothrix cholodnii SP-6 6160613 YP_001791753.1 CDS Lcho_2723 NC_010524.1 3004012 3005211 R PFAM: Metal-dependent hydrolase HDOD; KEGG: mpt:Mpe_A3062 signal transduction protein; putative signal transduction protein complement(3004012..3005211) Leptothrix cholodnii SP-6 6160614 YP_001791754.1 CDS Lcho_2724 NC_010524.1 3005233 3006450 R TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: mpt:Mpe_A3063 flagellin-related hook-associated protein; flagellar hook-associated protein 3 complement(3005233..3006450) Leptothrix cholodnii SP-6 6160615 YP_001791755.1 CDS Lcho_2725 NC_010524.1 3006548 3008470 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: mpt:Mpe_A3064 flagellar hook-associated protein; flagellar hook-associated protein FlgK complement(3006548..3008470) Leptothrix cholodnii SP-6 6160616 YP_001791756.1 CDS Lcho_2726 NC_010524.1 3008467 3009513 R KEGG: mpt:Mpe_A3065 flagellum-specific muramidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ complement(3008467..3009513) Leptothrix cholodnii SP-6 6160617 YP_001791757.1 CDS flgI NC_010524.1 3009516 3010694 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(3009516..3010694) Leptothrix cholodnii SP-6 6163465 YP_001791758.1 CDS Lcho_2728 NC_010524.1 3010741 3011442 R PFAM: flagellar L-ring protein; KEGG: mpt:Mpe_A3067 flagellar basal-body L-ring protein; flagellar L-ring protein complement(3010741..3011442) Leptothrix cholodnii SP-6 6163466 YP_001791759.1 CDS Lcho_2729 NC_010524.1 3011452 3012234 R TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mpt:Mpe_A3068 flagellar basal body and hook protein; flagellar basal-body rod protein FlgG complement(3011452..3012234) Leptothrix cholodnii SP-6 6163467 YP_001791760.1 CDS Lcho_2730 NC_010524.1 3012252 3012977 R TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: mpt:Mpe_A3069 flagellar basal body and hook protein; flagellar basal-body rod protein FlgF complement(3012252..3012977) Leptothrix cholodnii SP-6 6163468 YP_001791761.1 CDS Lcho_2731 NC_010524.1 3012992 3014497 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: bxe:Bxe_A0143 putative flagellar hook protein FlgE; hypothetical protein complement(3012992..3014497) Leptothrix cholodnii SP-6 6163469 YP_001791762.1 CDS Lcho_2732 NC_010524.1 3014557 3015231 R PFAM: flagellar hook capping protein; KEGG: rfr:Rfer_3716 flagellar hook capping protein; flagellar hook capping protein complement(3014557..3015231) Leptothrix cholodnii SP-6 6163470 YP_001791763.1 CDS Lcho_2733 NC_010524.1 3015298 3015708 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mpt:Mpe_A3072 flagellar basal body rod protein; flagellar basal-body rod protein FlgC complement(3015298..3015708) Leptothrix cholodnii SP-6 6163471 YP_001791764.1 CDS Lcho_2734 NC_010524.1 3015743 3016147 R TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: mpt:Mpe_A3073 flagellar basal body protein; flagellar basal-body rod protein FlgB complement(3015743..3016147) Leptothrix cholodnii SP-6 6161810 YP_001791765.1 CDS Lcho_2735 NC_010524.1 3016319 3017086 D TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: mpt:Mpe_A3074 flagellar basal body P-ring biosynthesis protein; flagella basal body P-ring formation protein FlgA 3016319..3017086 Leptothrix cholodnii SP-6 6161811 YP_001791766.1 CDS Lcho_2736 NC_010524.1 3017406 3017726 D PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: mpt:Mpe_A3075 negative regulator of flagellin synthesis (anti-S28 factor); anti-sigma-28 factor FlgM 3017406..3017726 Leptothrix cholodnii SP-6 6161812 YP_001791767.1 CDS Lcho_2737 NC_010524.1 3017723 3018130 D KEGG: mpt:Mpe_A3076 hypothetical protein; hypothetical protein 3017723..3018130 Leptothrix cholodnii SP-6 6161813 YP_001791768.1 CDS Lcho_2738 NC_010524.1 3018137 3018511 R PFAM: Domain of unknown function DUF1801; hypothetical protein complement(3018137..3018511) Leptothrix cholodnii SP-6 6161814 YP_001791769.1 CDS Lcho_2739 NC_010524.1 3018574 3018993 R KEGG: mpt:Mpe_A1206 hypothetical protein; hypothetical protein complement(3018574..3018993) Leptothrix cholodnii SP-6 6161815 YP_001791770.1 CDS dcd NC_010524.1 3019129 3019698 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(3019129..3019698) Leptothrix cholodnii SP-6 6161816 YP_001791771.1 CDS Lcho_2741 NC_010524.1 3019823 3020362 D PFAM: protein of unknown function DUF962; KEGG: psb:Psyr_0242 protein of unknown function DUF962; hypothetical protein 3019823..3020362 Leptothrix cholodnii SP-6 6163038 YP_001791772.1 CDS Lcho_2742 NC_010524.1 3020402 3020773 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: mpt:Mpe_A3165 putative HNS-like transcription regulator protein; histone family protein nucleoid-structuring protein H-NS complement(3020402..3020773) Leptothrix cholodnii SP-6 6163039 YP_001791773.1 CDS Lcho_2743 NC_010524.1 3020893 3021936 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_2134 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3020893..3021936 Leptothrix cholodnii SP-6 6163040 YP_001791774.1 CDS Lcho_2744 NC_010524.1 3021920 3023260 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mfa:Mfla_1283 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(3021920..3023260) Leptothrix cholodnii SP-6 6163041 YP_001791775.1 CDS Lcho_2745 NC_010524.1 3023305 3024774 R PFAM: chemotaxis sensory transducer; KEGG: dac:Daci_5410 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3023305..3024774) Leptothrix cholodnii SP-6 6163042 YP_001791776.1 CDS Lcho_2746 NC_010524.1 3024930 3025292 D PFAM: response regulator receiver; KEGG: dac:Daci_1873 response regulator receiver protein; response regulator receiver protein 3024930..3025292 Leptothrix cholodnii SP-6 6163043 YP_001791777.1 CDS Lcho_2747 NC_010524.1 3025302 3026180 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: reh:H16_A0643 uncharacterized protein required for formate dehydrogenase activity; formate dehydrogenase family accessory protein FdhD complement(3025302..3026180) Leptothrix cholodnii SP-6 6163044 YP_001791778.1 CDS Lcho_2748 NC_010524.1 3026315 3027106 D KEGG: ade:Adeh_1032 hypothetical protein; hypothetical protein 3026315..3027106 Leptothrix cholodnii SP-6 6163987 YP_001791779.1 CDS Lcho_2749 NC_010524.1 3027113 3027409 R KEGG: mca:MCA1389 formate dehydrogenase, delta subunit; hypothetical protein complement(3027113..3027409) Leptothrix cholodnii SP-6 6163988 YP_001791780.1 CDS Lcho_2750 NC_010524.1 3027406 3030315 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mpt:Mpe_A3710 NAD-dependent formate dehydrogenase alpha subunit; formate dehydrogenase subunit alpha complement(3027406..3030315) Leptothrix cholodnii SP-6 6163989 YP_001791781.1 CDS Lcho_2751 NC_010524.1 3030326 3031897 R PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mpt:Mpe_A3709 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(3030326..3031897) Leptothrix cholodnii SP-6 6163990 YP_001791782.1 CDS Lcho_2752 NC_010524.1 3031894 3032415 R PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: mpt:Mpe_A3708 NAD-dependent formate dehydrogenase gamma subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit complement(3031894..3032415) Leptothrix cholodnii SP-6 6163991 YP_001791783.1 CDS Lcho_2753 NC_010524.1 3032552 3033514 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_0823 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3032552..3033514) Leptothrix cholodnii SP-6 6163992 YP_001791784.1 CDS Lcho_2754 NC_010524.1 3033662 3034174 D hypothetical protein 3033662..3034174 Leptothrix cholodnii SP-6 6163993 YP_001791785.1 CDS Lcho_2755 NC_010524.1 3034178 3035272 R PFAM: protein of unknown function DUF59; KEGG: mpt:Mpe_A1163 putative iron sulfur binding protein; hypothetical protein complement(3034178..3035272) Leptothrix cholodnii SP-6 6161388 YP_001791786.1 CDS Lcho_2756 NC_010524.1 3035358 3035693 R PFAM: ferredoxin; KEGG: mpt:Mpe_A1368 ferredoxin; ferredoxin complement(3035358..3035693) Leptothrix cholodnii SP-6 6161389 YP_001791787.1 CDS Lcho_2757 NC_010524.1 3035690 3036745 R KEGG: azc:AZC_0688 hypothetical protein; hypothetical protein complement(3035690..3036745) Leptothrix cholodnii SP-6 6161390 YP_001791788.1 CDS metG NC_010524.1 3036864 3038933 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3036864..3038933 Leptothrix cholodnii SP-6 6161391 YP_001791789.1 CDS Lcho_2759 NC_010524.1 3038948 3039733 D PFAM: protein of unknown function DUF1275; KEGG: pol:Bpro_0910 protein of unknown function DUF1275; hypothetical protein 3038948..3039733 Leptothrix cholodnii SP-6 6161392 YP_001791790.1 CDS Lcho_2760 NC_010524.1 3039794 3041617 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mpt:Mpe_A1160 sulfate transporter; sulfate transporter 3039794..3041617 Leptothrix cholodnii SP-6 6161393 YP_001791791.1 CDS Lcho_2761 NC_010524.1 3041660 3041860 D KEGG: mpt:Mpe_A1158 hypothetical protein; hypothetical protein 3041660..3041860 Leptothrix cholodnii SP-6 6161394 YP_001791792.1 CDS Lcho_2762 NC_010524.1 3041857 3042768 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: mpt:Mpe_A1157 segregation and condensation protein A; chromosome segregation and condensation protein ScpA 3041857..3042768 Leptothrix cholodnii SP-6 6163620 YP_001791793.1 CDS Lcho_2763 NC_010524.1 3043118 3045373 D KEGG: eba:ebA2924 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3043118..3045373 Leptothrix cholodnii SP-6 6163621 YP_001791794.1 CDS Lcho_2764 NC_010524.1 3045378 3046355 R TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: ajs:Ajs_3326 guanosine 5'-monophosphate oxidoreductase; guanosine 5'-monophosphate oxidoreductase complement(3045378..3046355) Leptothrix cholodnii SP-6 6163622 YP_001791795.1 CDS Lcho_2765 NC_010524.1 3046557 3048158 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: bja:bll1362 hypothetical protein; diguanylate cyclase complement(3046557..3048158) Leptothrix cholodnii SP-6 6163623 YP_001791796.1 CDS Lcho_2766 NC_010524.1 3048265 3049323 R PFAM: Patatin; KEGG: pol:Bpro_0732 patatin; patatin complement(3048265..3049323) Leptothrix cholodnii SP-6 6163624 YP_001791797.1 CDS Lcho_2767 NC_010524.1 3049400 3051946 D PFAM: UvrD/REP helicase; KEGG: mpt:Mpe_A1142 DNA helicase II; UvrD/REP helicase 3049400..3051946 Leptothrix cholodnii SP-6 6163625 YP_001791798.1 CDS Lcho_2768 NC_010524.1 3052000 3052497 R PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_0378 ferritin, Dps family protein; ferritin Dps family protein complement(3052000..3052497) Leptothrix cholodnii SP-6 6163626 YP_001791799.1 CDS Lcho_2769 NC_010524.1 3052648 3053901 R TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mpt:Mpe_A2468 isocitrate dehydrogenase; isocitrate dehydrogenase complement(3052648..3053901) Leptothrix cholodnii SP-6 6163402 YP_001791800.1 CDS Lcho_2770 NC_010524.1 3053970 3054689 R KEGG: mpt:Mpe_A2469 putative transmembrane protein; putative transmembrane protein complement(3053970..3054689) Leptothrix cholodnii SP-6 6163403 YP_001791801.1 CDS Lcho_2771 NC_010524.1 3054689 3056152 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3054689..3056152) Leptothrix cholodnii SP-6 6163404 YP_001791802.1 CDS Lcho_2772 NC_010524.1 3056325 3057062 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mpt:Mpe_A2471 transcription factor Fnr; Crp/FNR family transcriptional regulator 3056325..3057062 Leptothrix cholodnii SP-6 6163405 YP_001791803.1 CDS Lcho_2773 NC_010524.1 3057075 3057407 R KEGG: vei:Veis_1164 hypothetical protein; hypothetical protein complement(3057075..3057407) Leptothrix cholodnii SP-6 6163406 YP_001791804.1 CDS Lcho_2774 NC_010524.1 3057404 3057667 R KEGG: pna:Pnap_3777 hypothetical protein; hypothetical protein complement(3057404..3057667) Leptothrix cholodnii SP-6 6163407 YP_001791805.1 CDS Lcho_2775 NC_010524.1 3057683 3059170 R TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pna:Pnap_3778 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase accessory protein CcoG complement(3057683..3059170) Leptothrix cholodnii SP-6 6163408 YP_001791806.1 CDS Lcho_2776 NC_010524.1 3059193 3060125 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: mpt:Mpe_A2475 putative cytochrome c oxidase (subunit III) transmembrane protein; cytochrome c oxidase, cbb3-type subunit III complement(3059193..3060125) Leptothrix cholodnii SP-6 6162267 YP_001791807.1 CDS Lcho_2777 NC_010524.1 3060118 3060324 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: rfr:Rfer_1932 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit complement(3060118..3060324) Leptothrix cholodnii SP-6 6162268 YP_001791808.1 CDS Lcho_2778 NC_010524.1 3060332 3060961 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(3060332..3060961) Leptothrix cholodnii SP-6 6162269 YP_001791809.1 CDS Lcho_2779 NC_010524.1 3060983 3062422 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(3060983..3062422) Leptothrix cholodnii SP-6 6162270 YP_001791810.1 CDS Lcho_2780 NC_010524.1 3062478 3062648 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: dac:Daci_2774 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(3062478..3062648) Leptothrix cholodnii SP-6 6162271 YP_001791811.1 CDS Lcho_2781 NC_010524.1 3062652 3065069 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mpt:Mpe_A2479 putative cation transport P-type ATPase; heavy metal translocating P-type ATPase complement(3062652..3065069) Leptothrix cholodnii SP-6 6162272 YP_001791812.1 CDS Lcho_2782 NC_010524.1 3065147 3065680 D PFAM: protein of unknown function DUF192; KEGG: mpt:Mpe_A2480 exported protein; hypothetical protein 3065147..3065680 Leptothrix cholodnii SP-6 6162273 YP_001791813.1 CDS Lcho_2783 NC_010524.1 3065809 3066600 D PFAM: protein of unknown function DUF81; KEGG: mpt:Mpe_A1504 hypothetical protein; hypothetical protein 3065809..3066600 Leptothrix cholodnii SP-6 6162247 YP_001791814.1 CDS Lcho_2784 NC_010524.1 3066674 3068380 D PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mpt:Mpe_A1503 putative nitrite/sulfite reductase; sulfite reductase 3066674..3068380 Leptothrix cholodnii SP-6 6162248 YP_001791815.1 CDS Lcho_2785 NC_010524.1 3068404 3068940 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A1502 hypothetical protein; hypothetical protein 3068404..3068940 Leptothrix cholodnii SP-6 6162249 YP_001791816.1 CDS Lcho_2786 NC_010524.1 3068937 3069671 D KEGG: mpt:Mpe_A1501 phosphoadenylyl-sulfate reductase (thioredoxin); TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase; adenylylsulfate reductase 3068937..3069671 Leptothrix cholodnii SP-6 6162250 YP_001791817.1 CDS Lcho_2787 NC_010524.1 3069714 3070685 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3069714..3070685 Leptothrix cholodnii SP-6 6162251 YP_001791818.1 CDS Lcho_2788 NC_010524.1 3070770 3072092 D KEGG: mpt:Mpe_A1499 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; sulfate adenylyltransferase large subunit 3070770..3072092 Leptothrix cholodnii SP-6 6162252 YP_001791819.1 CDS Lcho_2789 NC_010524.1 3072098 3072820 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mpt:Mpe_A1498 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 3072098..3072820 Leptothrix cholodnii SP-6 6162253 YP_001791820.1 CDS Lcho_2790 NC_010524.1 3072945 3073268 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mpt:Mpe_A1497 ferredoxin; 4Fe-4S ferredoxin 3072945..3073268 Leptothrix cholodnii SP-6 6162196 YP_001791821.1 CDS Lcho_2791 NC_010524.1 3073336 3074442 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dac:Daci_4658 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3073336..3074442 Leptothrix cholodnii SP-6 6162197 YP_001791822.1 CDS Lcho_2792 NC_010524.1 3074516 3076750 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 3074516..3076750 Leptothrix cholodnii SP-6 6162198 YP_001791823.1 CDS Lcho_2793 NC_010524.1 3077154 3077783 D PFAM: Dual specificity protein phosphatase; SMART: Protein-tyrosine phosphatase, catalytic; KEGG: rpe:RPE_4503 ADP-ribosylation/crystallin J1; dual specificity protein phosphatase 3077154..3077783 Leptothrix cholodnii SP-6 6162200 YP_001791824.1 CDS Lcho_2794 NC_010524.1 3078022 3080241 D KEGG: bbr:BB1386 hypothetical protein; hypothetical protein 3078022..3080241 Leptothrix cholodnii SP-6 6162201 YP_001791825.1 CDS Lcho_2795 NC_010524.1 3080262 3081041 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB1383 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 3080262..3081041 Leptothrix cholodnii SP-6 6161921 YP_001791826.1 CDS Lcho_2796 NC_010524.1 3081053 3081325 D hypothetical protein 3081053..3081325 Leptothrix cholodnii SP-6 6161922 YP_001791827.1 CDS Lcho_2797 NC_010524.1 3081369 3082778 D PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rfr:Rfer_2974 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 3081369..3082778 Leptothrix cholodnii SP-6 6161923 YP_001791828.1 CDS Lcho_2798 NC_010524.1 3082775 3084025 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: rfr:Rfer_2975 acetate kinase; acetate kinase 3082775..3084025 Leptothrix cholodnii SP-6 6161924 YP_001791829.1 CDS Lcho_2799 NC_010524.1 3084063 3084323 R hypothetical protein complement(3084063..3084323) Leptothrix cholodnii SP-6 6161925 YP_001791830.1 CDS Lcho_2800 NC_010524.1 3084504 3085088 D PFAM: nuclease (SNase domain protein); KEGG: nmu:Nmul_A2003 nuclease (SNase-like); nuclease 3084504..3085088 Leptothrix cholodnii SP-6 6161926 YP_001791831.1 CDS Lcho_2801 NC_010524.1 3085190 3086611 D PFAM: Ethanolamine ammonia lyase large subunit; KEGG: mpt:Mpe_A2417 putative ethanolamine ammonia-lyase heavy chain protein; ethanolamine ammonia lyase large subunit 3085190..3086611 Leptothrix cholodnii SP-6 6161927 YP_001791832.1 CDS Lcho_2802 NC_010524.1 3086608 3087468 D PFAM: Ethanolamine ammonia-lyase light chain; KEGG: pna:Pnap_2627 ethanolamine ammonia-lyase; ethanolamine ammonia-lyase 3086608..3087468 Leptothrix cholodnii SP-6 6161915 YP_001791833.1 CDS Lcho_2803 NC_010524.1 3087454 3087750 R KEGG: dac:Daci_4071 histone family protein nucleoid-structuring protein H-NS; hypothetical protein complement(3087454..3087750) Leptothrix cholodnii SP-6 6161916 YP_001791834.1 CDS Lcho_2804 NC_010524.1 3088245 3090041 R PFAM: Metal-dependent hydrolase HDOD; SMART: serine/threonine protein kinase; KEGG: mpt:Mpe_A2971 serine/threonine protein kinase-like protein; serine/threonine protein kinase complement(3088245..3090041) Leptothrix cholodnii SP-6 6161918 YP_001791835.1 CDS Lcho_2805 NC_010524.1 3090251 3090580 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mpt:Mpe_A1283 thioredoxin 1; thioredoxin 3090251..3090580 Leptothrix cholodnii SP-6 6161919 YP_001791836.1 CDS rho NC_010524.1 3090832 3092094 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 3090832..3092094 Leptothrix cholodnii SP-6 6161920 YP_001791837.1 CDS Lcho_2807 NC_010524.1 3092229 3092486 D PFAM: ribosomal protein L31; KEGG: mpt:Mpe_A1281 putative ribosomal protein L31; 50S ribosomal protein L31 3092229..3092486 Leptothrix cholodnii SP-6 6161848 YP_001791838.1 CDS Lcho_2808 NC_010524.1 3092672 3094285 D KEGG: mpt:Mpe_A1280 hypothetical protein; hypothetical protein 3092672..3094285 Leptothrix cholodnii SP-6 6161849 YP_001791839.1 CDS Lcho_2809 NC_010524.1 3094303 3095640 R KEGG: mpt:Mpe_A1278 putative phosphate regulon two-component system sensor kinase; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(3094303..3095640) Leptothrix cholodnii SP-6 6161850 YP_001791840.1 CDS Lcho_2810 NC_010524.1 3095755 3096459 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: mpt:Mpe_A1276 putative phosphate transport system protein; phosphate uptake regulator PhoU complement(3095755..3096459) Leptothrix cholodnii SP-6 6161851 YP_001791841.1 CDS Lcho_2811 NC_010524.1 3096489 3097274 R KEGG: mpt:Mpe_A1275 phosphate transport ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(3096489..3097274) Leptothrix cholodnii SP-6 6161852 YP_001791842.1 CDS pstA NC_010524.1 3097291 3098157 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(3097291..3098157) Leptothrix cholodnii SP-6 6161853 YP_001791843.1 CDS Lcho_2813 NC_010524.1 3098157 3099125 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1273 phosphate transport system permease protein; phosphate ABC transporter permease complement(3098157..3099125) Leptothrix cholodnii SP-6 6161854 YP_001791844.1 CDS Lcho_2814 NC_010524.1 3099195 3100247 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: mpt:Mpe_A1272 putative phosphate-binding periplasmic (pbp) ABC transporter protein; phosphate ABC transporter substrate-binding protein complement(3099195..3100247) Leptothrix cholodnii SP-6 6161655 YP_001791845.1 CDS glmM NC_010524.1 3100393 3101727 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3100393..3101727) Leptothrix cholodnii SP-6 6161656 YP_001791846.1 CDS Lcho_2816 NC_010524.1 3101795 3102622 R KEGG: mpt:Mpe_A1269 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(3101795..3102622) Leptothrix cholodnii SP-6 6161657 YP_001791847.1 CDS Lcho_2817 NC_010524.1 3102722 3104626 R KEGG: mpt:Mpe_A1268 vesicle-fusing ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(3102722..3104626) Leptothrix cholodnii SP-6 6161658 YP_001791848.1 CDS Lcho_2818 NC_010524.1 3104792 3105490 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: mpt:Mpe_A1267 putative ribosomal RNA large subunit methyltransferase J; ribosomal RNA methyltransferase RrmJ/FtsJ complement(3104792..3105490) Leptothrix cholodnii SP-6 6161659 YP_001791849.1 CDS Lcho_2819 NC_010524.1 3105586 3105993 D PFAM: protein of unknown function UPF0044; KEGG: mpt:Mpe_A1266 hypothetical protein; hypothetical protein 3105586..3105993 Leptothrix cholodnii SP-6 6161660 YP_001791850.1 CDS Lcho_2820 NC_010524.1 3106037 3106492 R KEGG: mpt:Mpe_A1264 hypothetical protein; hypothetical protein complement(3106037..3106492) Leptothrix cholodnii SP-6 6161661 YP_001791851.1 CDS Lcho_2821 NC_010524.1 3106504 3106980 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: aav:Aave_2612 transcription elongation factor GreA; transcription elongation factor GreA complement(3106504..3106980) Leptothrix cholodnii SP-6 6161628 YP_001791852.1 CDS Lcho_2822 NC_010524.1 3107075 3110350 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: mpt:Mpe_A1262 putative carbamoyl-phosphate synthase (large chain) protein; carbamoyl-phosphate synthase large subunit complement(3107075..3110350) Leptothrix cholodnii SP-6 6161629 YP_001791853.1 CDS Lcho_2823 NC_010524.1 3110343 3111527 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: pol:Bpro_2679 carbamoyl phosphate synthase small subunit; carbamoyl-phosphate synthase small subunit complement(3110343..3111527) Leptothrix cholodnii SP-6 6161630 YP_001791854.1 CDS Lcho_2824 NC_010524.1 3111738 3112145 R PFAM: protein of unknown function DUF336; KEGG: mpt:Mpe_A1258 hypothetical protein; hypothetical protein complement(3111738..3112145) Leptothrix cholodnii SP-6 6161631 YP_001791855.1 CDS Lcho_2825 NC_010524.1 3112327 3113022 D PFAM: protein of unknown function UPF0005; KEGG: ajs:Ajs_2411 protein of unknown function UPF0005; hypothetical protein 3112327..3113022 Leptothrix cholodnii SP-6 6161632 YP_001791856.1 CDS Lcho_2826 NC_010524.1 3113110 3114531 R KEGG: mpt:Mpe_A1530 putative replicative DNA helicase protein; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase complement(3113110..3114531) Leptothrix cholodnii SP-6 6161633 YP_001791857.1 CDS Lcho_2827 NC_010524.1 3114710 3115162 R PFAM: ribosomal protein L9; KEGG: mpt:Mpe_A1529 50S ribosomal protein L9; 50S ribosomal protein L9 complement(3114710..3115162) Leptothrix cholodnii SP-6 6161634 YP_001791858.1 CDS rpsR NC_010524.1 3115174 3115458 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3115174..3115458) Leptothrix cholodnii SP-6 6161582 YP_001791859.1 CDS Lcho_2829 NC_010524.1 3115469 3115777 R KEGG: mpt:Mpe_A1527 primosomal replication protein N; primosomal replication protein N complement(3115469..3115777) Leptothrix cholodnii SP-6 6161583 YP_001791860.1 CDS rpsF NC_010524.1 3115822 3116187 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3115822..3116187) Leptothrix cholodnii SP-6 6161584 YP_001791861.1 CDS Lcho_2831 NC_010524.1 3116304 3118415 R PFAM: Na+/solute symporter; KEGG: mpt:Mpe_A0866 putative membrane transport protein; Na+/solute symporter complement(3116304..3118415) Leptothrix cholodnii SP-6 6161585 YP_001791862.1 CDS Lcho_2832 NC_010524.1 3118433 3118705 R KEGG: eba:ebA828 predicted membrane protein; hypothetical protein complement(3118433..3118705) Leptothrix cholodnii SP-6 6161586 YP_001791863.1 CDS Lcho_2833 NC_010524.1 3118851 3121247 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(3118851..3121247) Leptothrix cholodnii SP-6 6161587 YP_001791864.1 CDS Lcho_2834 NC_010524.1 3121446 3122267 D PFAM: protein of unknown function DUF299; KEGG: mpt:Mpe_A1520 hypothetical protein; hypothetical protein 3121446..3122267 Leptothrix cholodnii SP-6 6161588 YP_001791865.1 CDS Lcho_2835 NC_010524.1 3122296 3123129 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mpt:Mpe_A1965 putative tRNA/rRNA methyltransferase protein; tRNA/rRNA methyltransferase SpoU complement(3122296..3123129) Leptothrix cholodnii SP-6 6163103 YP_001791866.1 CDS rnhB NC_010524.1 3123129 3123785 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3123129..3123785) Leptothrix cholodnii SP-6 6163104 YP_001791867.1 CDS lpxB NC_010524.1 3123757 3124902 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3123757..3124902) Leptothrix cholodnii SP-6 6163105 YP_001791868.1 CDS Lcho_2838 NC_010524.1 3124932 3125726 R TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: mpt:Mpe_A1968 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase complement(3124932..3125726) Leptothrix cholodnii SP-6 6163106 YP_001791869.1 CDS Lcho_2839 NC_010524.1 3125741 3126187 R TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: aav:Aave_1834 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ complement(3125741..3126187) Leptothrix cholodnii SP-6 6163107 YP_001791870.1 CDS Lcho_2840 NC_010524.1 3126184 3127212 R TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: mpt:Mpe_A1969 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase complement(3126184..3127212) Leptothrix cholodnii SP-6 6163108 YP_001791871.1 CDS Lcho_2841 NC_010524.1 3127283 3127807 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: mpt:Mpe_A1970 putative transmembrane protein; outer membrane chaperone Skp complement(3127283..3127807) Leptothrix cholodnii SP-6 6163109 YP_001791872.1 CDS Lcho_2842 NC_010524.1 3127807 3130119 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: mpt:Mpe_A1971 putative outer membrane signal peptide protein; outer membrane protein assembly complex, YaeT protein complement(3127807..3130119) Leptothrix cholodnii SP-6 6162659 YP_001791873.1 CDS Lcho_2843 NC_010524.1 3130124 3131599 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: mpt:Mpe_A1972 hypothetical protein; membrane-associated zinc metalloprotease complement(3130124..3131599) Leptothrix cholodnii SP-6 6162660 YP_001791874.1 CDS Lcho_2844 NC_010524.1 3131606 3132814 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3131606..3132814) Leptothrix cholodnii SP-6 6162661 YP_001791875.1 CDS Lcho_2845 NC_010524.1 3132811 3133647 R PFAM: phosphatidate cytidylyltransferase; KEGG: mpt:Mpe_A1974 putative phosphatidate cytidylyltransferase membrane protein; phosphatidate cytidylyltransferase complement(3132811..3133647) Leptothrix cholodnii SP-6 6162662 YP_001791876.1 CDS Lcho_2846 NC_010524.1 3133657 3134430 R KEGG: mpt:Mpe_A1975 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(3133657..3134430) Leptothrix cholodnii SP-6 6162663 YP_001791877.1 CDS frr NC_010524.1 3134452 3135012 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3134452..3135012) Leptothrix cholodnii SP-6 6162664 YP_001791878.1 CDS pyrH NC_010524.1 3135055 3135765 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3135055..3135765) Leptothrix cholodnii SP-6 6162665 YP_001791879.1 CDS tsf NC_010524.1 3135854 3136774 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3135854..3136774) Leptothrix cholodnii SP-6 6162601 YP_001791880.1 CDS Lcho_2850 NC_010524.1 3136874 3137620 R PFAM: ribosomal protein S2; KEGG: mpt:Mpe_A1979 putative 30S ribosomal protein S2; 30S ribosomal protein S2 complement(3136874..3137620) Leptothrix cholodnii SP-6 6162602 YP_001791881.1 CDS Lcho_2851 NC_010524.1 3137914 3139155 D PFAM: Amidase; KEGG: mpt:Mpe_A1980 amidase; amidase 3137914..3139155 Leptothrix cholodnii SP-6 6162603 YP_001791882.1 CDS Lcho_2852 NC_010524.1 3139155 3140522 D PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1981 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 3139155..3140522 Leptothrix cholodnii SP-6 6162604 YP_001791883.1 CDS Lcho_2853 NC_010524.1 3140519 3140980 D KEGG: mpt:Mpe_A3449 hypothetical protein; hypothetical protein 3140519..3140980 Leptothrix cholodnii SP-6 6162605 YP_001791884.1 CDS Lcho_2854 NC_010524.1 3140983 3142629 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: mpt:Mpe_A1982 hypothetical protein; carbohydrate kinase 3140983..3142629 Leptothrix cholodnii SP-6 6162606 YP_001791885.1 CDS Lcho_2855 NC_010524.1 3142650 3144851 R KEGG: mpt:Mpe_A1983 exoribonuclease II; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R complement(3142650..3144851) Leptothrix cholodnii SP-6 6162607 YP_001791886.1 CDS Lcho_2856 NC_010524.1 3145243 3145764 R PFAM: phosphoribosyltransferase; KEGG: mpt:Mpe_A1984 putative transferase; phosphoribosyltransferase complement(3145243..3145764) Leptothrix cholodnii SP-6 6161856 YP_001791887.1 CDS Lcho_2857 NC_010524.1 3145797 3147134 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3145797..3147134) Leptothrix cholodnii SP-6 6161857 YP_001791888.1 CDS Lcho_2858 NC_010524.1 3147182 3148345 R PFAM: tRNA synthetase class II (G H P and S); KEGG: mpt:Mpe_A1986 ATP phosphoribosyltransferase regulatory subunit; tRNA synthetase class II (G H P and S) complement(3147182..3148345) Leptothrix cholodnii SP-6 6161858 YP_001791889.1 CDS Lcho_2859 NC_010524.1 3148402 3148590 R KEGG: mpt:Mpe_A1987 hypothetical protein; hypothetical protein complement(3148402..3148590) Leptothrix cholodnii SP-6 6161859 YP_001791890.1 CDS Lcho_2860 NC_010524.1 3148601 3149488 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: mpt:Mpe_A1988 putative serine protease transmembrane protein; HflC protein complement(3148601..3149488) Leptothrix cholodnii SP-6 6161860 YP_001791891.1 CDS Lcho_2861 NC_010524.1 3149506 3150687 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: mpt:Mpe_A1989 hypothetical protein; HflK protein complement(3149506..3150687) Leptothrix cholodnii SP-6 6159962 YP_001791892.1 CDS Lcho_2862 NC_010524.1 3150833 3152071 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: mpt:Mpe_A1990 putative GTP-binding protein; GTP-binding proten HflX complement(3150833..3152071) Leptothrix cholodnii SP-6 6159963 YP_001791893.1 CDS Lcho_2863 NC_010524.1 3152113 3152355 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: mpt:Mpe_A1991 putative host factor-I protein; RNA chaperone Hfq complement(3152113..3152355) Leptothrix cholodnii SP-6 6159964 YP_001791894.1 CDS engA NC_010524.1 3152425 3153771 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3152425..3153771) Leptothrix cholodnii SP-6 6159965 YP_001791895.1 CDS Lcho_2865 NC_010524.1 3153805 3154968 R TIGRFAM: outer membrane assembly lipoprotein YfgL; SMART: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A1993 hypothetical protein; outer membrane assembly lipoprotein YfgL complement(3153805..3154968) Leptothrix cholodnii SP-6 6159966 YP_001791896.1 CDS Lcho_2866 NC_010524.1 3154965 3155639 R KEGG: mpt:Mpe_A1994 hypothetical protein; hypothetical protein complement(3154965..3155639) Leptothrix cholodnii SP-6 6159967 YP_001791897.1 CDS hisS NC_010524.1 3155776 3157077 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3155776..3157077) Leptothrix cholodnii SP-6 6159968 YP_001791898.1 CDS ispG NC_010524.1 3157147 3158439 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(3157147..3158439) Leptothrix cholodnii SP-6 6159743 YP_001791899.1 CDS Lcho_2869 NC_010524.1 3158448 3159347 R KEGG: mpt:Mpe_A1997 hypothetical protein; hypothetical protein complement(3158448..3159347) Leptothrix cholodnii SP-6 6159744 YP_001791900.1 CDS Lcho_2870 NC_010524.1 3159340 3160260 R KEGG: mpt:Mpe_A1998 uncharacterized protein involved in fimbrial biogenesis; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW complement(3159340..3160260) Leptothrix cholodnii SP-6 6159745 YP_001791901.1 CDS Lcho_2871 NC_010524.1 3160321 3161502 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: mpt:Mpe_A1999 hypothetical protein; radical SAM protein complement(3160321..3161502) Leptothrix cholodnii SP-6 6159746 YP_001791902.1 CDS Lcho_2872 NC_010524.1 3161584 3162009 R PFAM: nucleoside diphosphate kinase; KEGG: mpt:Mpe_A2000 nucleoside diphosphate kinase; nucleoside-diphosphate kinase complement(3161584..3162009) Leptothrix cholodnii SP-6 6159747 YP_001791903.1 CDS Lcho_2873 NC_010524.1 3162128 3164338 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mpt:Mpe_A2001 ribosomal large subunit pseudouridine synthase B; pseudouridine synthase complement(3162128..3164338) Leptothrix cholodnii SP-6 6159748 YP_001791904.1 CDS Lcho_2874 NC_010524.1 3164349 3164969 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: mpt:Mpe_A2002 putative segregation and condensation protein B; segregation and condensation protein B complement(3164349..3164969) Leptothrix cholodnii SP-6 6159749 YP_001791905.1 CDS Lcho_2875 NC_010524.1 3165278 3166387 R KEGG: mpt:Mpe_A2003 putative ribosomal large subunit pseudouridine synthase D protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(3165278..3166387) Leptothrix cholodnii SP-6 6159848 YP_001791906.1 CDS Lcho_2876 NC_010524.1 3166400 3167254 D KEGG: mpt:Mpe_A2004 putative transmembrane protein; putative transmembrane protein 3166400..3167254 Leptothrix cholodnii SP-6 6159849 YP_001791907.1 CDS Lcho_2877 NC_010524.1 3167264 3169240 R SMART: helicase c2; DEAD-like helicases; KEGG: mpt:Mpe_A2005 putative ATP-dependent DNA helicase-related protein; helicase c2 complement(3167264..3169240) Leptothrix cholodnii SP-6 6159850 YP_001791908.1 CDS Lcho_2878 NC_010524.1 3169237 3169440 R PFAM: protein of unknown function DUF465; KEGG: mpt:Mpe_A2006 hypothetical protein; hypothetical protein complement(3169237..3169440) Leptothrix cholodnii SP-6 6159851 YP_001791909.1 CDS Lcho_2879 NC_010524.1 3169494 3170261 D SMART: protein phosphatase 2C domain protein; KEGG: mpt:Mpe_A2007 hypothetical protein; protein serine/threonine phosphatase 3169494..3170261 Leptothrix cholodnii SP-6 6159852 YP_001791910.1 CDS Lcho_2880 NC_010524.1 3170310 3171410 R PFAM: AFG1-family ATPase; KEGG: mpt:Mpe_A2009 hypothetical protein; AFG1 family ATPase complement(3170310..3171410) Leptothrix cholodnii SP-6 6159853 YP_001791911.1 CDS Lcho_2881 NC_010524.1 3171493 3172920 R E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3171493..3172920) Leptothrix cholodnii SP-6 6159854 YP_001791912.1 CDS Lcho_2882 NC_010524.1 3172943 3173287 R PFAM: PspC domain protein; KEGG: sat:SYN_00293 transcriptional regulator-like protein; phage shock protein C complement(3172943..3173287) Leptothrix cholodnii SP-6 6160153 YP_001791913.1 CDS Lcho_2883 NC_010524.1 3173344 3174585 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: ajs:Ajs_1823 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(3173344..3174585) Leptothrix cholodnii SP-6 6160154 YP_001791914.1 CDS sucA NC_010524.1 3174696 3177548 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(3174696..3177548) Leptothrix cholodnii SP-6 6160155 YP_001791915.1 CDS Lcho_2885 NC_010524.1 3177810 3178823 R KEGG: nmu:Nmul_A2461 hypothetical protein; hypothetical protein complement(3177810..3178823) Leptothrix cholodnii SP-6 6160156 YP_001791916.1 CDS Lcho_2886 NC_010524.1 3179128 3179898 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mpt:Mpe_A2099 putative transcription regulator protein; IclR family transcriptional regulator 3179128..3179898 Leptothrix cholodnii SP-6 6160157 YP_001791917.1 CDS Lcho_2887 NC_010524.1 3179917 3180888 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: mpt:Mpe_A2100 serine-type D-Ala-D-Ala carboxypeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 complement(3179917..3180888) Leptothrix cholodnii SP-6 6160158 YP_001791918.1 CDS Lcho_2888 NC_010524.1 3181121 3182662 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(3181121..3182662) Leptothrix cholodnii SP-6 6160159 YP_001791919.1 CDS Lcho_2889 NC_010524.1 3182674 3184389 R KEGG: pol:Bpro_2321 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase complement(3182674..3184389) Leptothrix cholodnii SP-6 6160201 YP_001791920.1 CDS Lcho_2890 NC_010524.1 3184635 3185477 R TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mpt:Mpe_A2102 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(3184635..3185477) Leptothrix cholodnii SP-6 6160202 YP_001791921.1 CDS Lcho_2891 NC_010524.1 3185603 3186619 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(3185603..3186619) Leptothrix cholodnii SP-6 6160203 YP_001791922.1 CDS ilvH NC_010524.1 3186786 3187277 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(3186786..3187277) Leptothrix cholodnii SP-6 6160204 YP_001791923.1 CDS Lcho_2893 NC_010524.1 3187432 3189210 R acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit complement(3187432..3189210) Leptothrix cholodnii SP-6 6160205 YP_001791924.1 CDS Lcho_2894 NC_010524.1 3189500 3190066 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mpt:Mpe_A2106 putative RNA polymerase sigma factor transcription regulator protein; ECF subfamily RNA polymerase sigma-24 factor 3189500..3190066 Leptothrix cholodnii SP-6 6160206 YP_001791925.1 CDS Lcho_2895 NC_010524.1 3190063 3190554 D KEGG: ajs:Ajs_1767 putative transmembrane protein; putative transmembrane protein 3190063..3190554 Leptothrix cholodnii SP-6 6160207 YP_001791926.1 CDS Lcho_2896 NC_010524.1 3190617 3191309 D KEGG: mpt:Mpe_A2108 hypothetical protein; hypothetical protein 3190617..3191309 Leptothrix cholodnii SP-6 6160077 YP_001791927.1 CDS Lcho_2897 NC_010524.1 3191306 3191866 D PFAM: RDD domain containing protein; KEGG: mpt:Mpe_A2109 hypothetical protein; RDD domain-containing protein 3191306..3191866 Leptothrix cholodnii SP-6 6160078 YP_001791928.1 CDS Lcho_2898 NC_010524.1 3191914 3192294 D PFAM: diacylglycerol kinase; KEGG: mpt:Mpe_A2110 diacylglycerol kinase; diacylglycerol kinase 3191914..3192294 Leptothrix cholodnii SP-6 6160079 YP_001791929.1 CDS Lcho_2899 NC_010524.1 3192371 3192709 R PFAM: nitrogen regulatory protein P-II; KEGG: mpt:Mpe_A2112 putative nitrogen regulatory p-II transcription regulator protein; nitrogen regulatory protein P-II complement(3192371..3192709) Leptothrix cholodnii SP-6 6160080 YP_001791930.1 CDS Lcho_2900 NC_010524.1 3192818 3194482 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(3192818..3194482) Leptothrix cholodnii SP-6 6160081 YP_001791931.1 CDS Lcho_2901 NC_010524.1 3194692 3195540 D KEGG: bbr:BB3086 hypothetical protein; hypothetical protein 3194692..3195540 Leptothrix cholodnii SP-6 6160082 YP_001791932.1 CDS Lcho_2902 NC_010524.1 3195513 3197156 D KEGG: mpt:Mpe_A1533 hypothetical protein; hypothetical protein 3195513..3197156 Leptothrix cholodnii SP-6 6160083 YP_001791933.1 CDS Lcho_2903 NC_010524.1 3197161 3200490 D KEGG: mpt:Mpe_A1532 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 3197161..3200490 Leptothrix cholodnii SP-6 6160233 YP_001791934.1 CDS Lcho_2904 NC_010524.1 3200674 3201180 D KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein; putative type 4 fimbrial biogenesis transmembrane protein 3200674..3201180 Leptothrix cholodnii SP-6 6160234 YP_001791935.1 CDS Lcho_2905 NC_010524.1 3201174 3201812 D KEGG: mfa:Mfla_2522 methylation; Tfp pilus assembly protein FimT 3201174..3201812 Leptothrix cholodnii SP-6 6160235 YP_001791936.1 CDS Lcho_2906 NC_010524.1 3201857 3202276 D KEGG: dar:Daro_3039 hypothetical protein; hypothetical protein 3201857..3202276 Leptothrix cholodnii SP-6 6160236 YP_001791937.1 CDS Lcho_2907 NC_010524.1 3202286 3203452 D KEGG: mms:mma_3357 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW 3202286..3203452 Leptothrix cholodnii SP-6 6160237 YP_001791938.1 CDS Lcho_2908 NC_010524.1 3203463 3204140 D KEGG: mms:mma_3356 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 3203463..3204140 Leptothrix cholodnii SP-6 6160238 YP_001791939.1 CDS Lcho_2909 NC_010524.1 3204161 3208090 D KEGG: mms:mma_3355 type IV fimbrial biogenesis protein PilY1; type IV fimbrial biogenesis protein PilY1 3204161..3208090 Leptothrix cholodnii SP-6 6160239 YP_001791940.1 CDS Lcho_2910 NC_010524.1 3208096 3208881 D TIGRFAM: TonB family protein; KEGG: tbd:Tbd_2268 TonB domain protein; TonB family protein 3208096..3208881 Leptothrix cholodnii SP-6 6159993 YP_001791941.1 CDS Lcho_2911 NC_010524.1 3208901 3209836 R PFAM: histone deacetylase superfamily; KEGG: mpt:Mpe_A1246 putative histone deacetylase-family protein; histone deacetylase superfamily protein complement(3208901..3209836) Leptothrix cholodnii SP-6 6159994 YP_001791942.1 CDS Lcho_2912 NC_010524.1 3209889 3210938 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mpt:Mpe_A1245 putative MoxR like protein; ATPase 3209889..3210938 Leptothrix cholodnii SP-6 6159995 YP_001791943.1 CDS Lcho_2913 NC_010524.1 3210938 3212026 D PFAM: protein of unknown function DUF58; KEGG: mpt:Mpe_A1244 hypothetical protein; hypothetical protein 3210938..3212026 Leptothrix cholodnii SP-6 6159996 YP_001791944.1 CDS Lcho_2914 NC_010524.1 3212028 3214148 D PFAM: transglutaminase domain protein; KEGG: mpt:Mpe_A1243 hypothetical protein; transglutaminase domain-containing protein 3212028..3214148 Leptothrix cholodnii SP-6 6159997 YP_001791945.1 CDS Lcho_2915 NC_010524.1 3214160 3214558 D KEGG: mpt:Mpe_A2925 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 3214160..3214558 Leptothrix cholodnii SP-6 6159998 YP_001791946.1 CDS Lcho_2916 NC_010524.1 3214600 3218949 D KEGG: reh:H16_A0562 superfamily II DNA/RNA helicase, SNF2 family; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase 3214600..3218949 Leptothrix cholodnii SP-6 6159999 YP_001791947.1 CDS Lcho_2917 NC_010524.1 3218996 3220726 D KEGG: mms:mma_0535 ABC-type multidrug transport system, ATPase and permease components; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 3218996..3220726 Leptothrix cholodnii SP-6 6160257 YP_001791948.1 CDS Lcho_2918 NC_010524.1 3220795 3221418 R TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: mfa:Mfla_0760 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase complement(3220795..3221418) Leptothrix cholodnii SP-6 6160258 YP_001791949.1 CDS Lcho_2919 NC_010524.1 3221445 3223289 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(3221445..3223289) Leptothrix cholodnii SP-6 6160259 YP_001791950.1 CDS Lcho_2920 NC_010524.1 3223401 3224129 D PFAM: ChaC family protein; KEGG: mpt:Mpe_A2926 uncharacterized protein involved in cation transport; ChaC family protein 3223401..3224129 Leptothrix cholodnii SP-6 6160260 YP_001791951.1 CDS Lcho_2921 NC_010524.1 3224083 3224733 R KEGG: mpt:Mpe_A2928 hypothetical protein; hypothetical protein complement(3224083..3224733) Leptothrix cholodnii SP-6 6160261 YP_001791952.1 CDS Lcho_2922 NC_010524.1 3224987 3225622 D KEGG: mpt:Mpe_A2931 pyridoxamine-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 3224987..3225622 Leptothrix cholodnii SP-6 6160262 YP_001791953.1 CDS Lcho_2923 NC_010524.1 3225659 3226234 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: rfr:Rfer_2598 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase complement(3225659..3226234) Leptothrix cholodnii SP-6 6160263 YP_001791954.1 CDS Lcho_2924 NC_010524.1 3226327 3227142 D PFAM: protein of unknown function DUF218; KEGG: pna:Pnap_1132 protein of unknown function DUF218; hypothetical protein 3226327..3227142 Leptothrix cholodnii SP-6 6160026 YP_001791955.1 CDS Lcho_2925 NC_010524.1 3227454 3229028 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: mpt:Mpe_A2936 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; UbiD family decarboxylase complement(3227454..3229028) Leptothrix cholodnii SP-6 6160027 YP_001791956.1 CDS Lcho_2926 NC_010524.1 3229284 3230219 D PFAM: Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A2937 hypothetical protein; lytic transglycosylase catalytic subunit 3229284..3230219 Leptothrix cholodnii SP-6 6160028 YP_001791957.1 CDS glyA NC_010524.1 3230458 3231705 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3230458..3231705 Leptothrix cholodnii SP-6 6160029 YP_001791958.1 CDS nrdR NC_010524.1 3231825 3232268 D PFAM: ATP-cone domain protein; KEGG: mpt:Mpe_A2939 hypothetical protein; transcriptional regulator NrdR 3231825..3232268 Leptothrix cholodnii SP-6 6160030 YP_001791959.1 CDS Lcho_2929 NC_010524.1 3232389 3232955 D TIGRFAM: general secretion pathway protein H; KEGG: mpt:Mpe_A2940 fimbrial biogenesis protein; general secretion pathway protein H 3232389..3232955 Leptothrix cholodnii SP-6 6160031 YP_001791960.1 CDS Lcho_2930 NC_010524.1 3232949 3233398 D KEGG: asa:ASA_0688 type IV pilus assembly protein; type IV pilus assembly protein 3232949..3233398 Leptothrix cholodnii SP-6 6160032 YP_001791961.1 CDS Lcho_2931 NC_010524.1 3233404 3234114 D KEGG: mpt:Mpe_A2942 fimbrial biogenesis protein; fimbrial biogenesis protein 3233404..3234114 Leptothrix cholodnii SP-6 6160109 YP_001791962.1 CDS Lcho_2932 NC_010524.1 3234095 3235369 D KEGG: mpt:Mpe_A2943 fimbrial biogenesis protein; fimbrial biogenesis protein 3234095..3235369 Leptothrix cholodnii SP-6 6160110 YP_001791963.1 CDS Lcho_2933 NC_010524.1 3235366 3236547 D KEGG: eba:ebA5107 hypothetical protein; hypothetical protein 3235366..3236547 Leptothrix cholodnii SP-6 6160111 YP_001791964.1 CDS Lcho_2934 NC_010524.1 3236621 3237871 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: mpt:Mpe_A2945 bifunctional protein diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase; riboflavin biosynthesis protein RibD 3236621..3237871 Leptothrix cholodnii SP-6 6160112 YP_001791965.1 CDS Lcho_2935 NC_010524.1 3237919 3239010 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: mpt:Mpe_A2947 putative riboflavin biosynthesis bifunctional protein; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3237919..3239010 Leptothrix cholodnii SP-6 6160113 YP_001791966.1 CDS ribH NC_010524.1 3239067 3239531 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3239067..3239531 Leptothrix cholodnii SP-6 6160114 YP_001791967.1 CDS Lcho_2937 NC_010524.1 3239528 3240043 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: mpt:Mpe_A2949 putative N utilization substance B (transcriptional antiterminator)(l factor) transcription regulator protein; NusB antitermination factor 3239528..3240043 Leptothrix cholodnii SP-6 6160115 YP_001791968.1 CDS Lcho_2938 NC_010524.1 3240146 3241336 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; KEGG: mpt:Mpe_A2950 aminotransferase; aminotransferase 3240146..3241336 Leptothrix cholodnii SP-6 6159731 YP_001791969.1 CDS Lcho_2939 NC_010524.1 3241333 3242670 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mpt:Mpe_A2951 serine/threonine protein kinase-like protein; serine/threonine protein kinase 3241333..3242670 Leptothrix cholodnii SP-6 6159732 YP_001791970.1 CDS Lcho_2940 NC_010524.1 3242690 3243127 D TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: mpt:Mpe_A2953 putative thioesterase protein; tol-pal system-associated acyl-CoA thioesterase 3242690..3243127 Leptothrix cholodnii SP-6 6159733 YP_001791971.1 CDS Lcho_2941 NC_010524.1 3243124 3243834 D TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A2954 transmembrane protein/biopolymer transport; protein TolQ 3243124..3243834 Leptothrix cholodnii SP-6 6159734 YP_001791972.1 CDS Lcho_2942 NC_010524.1 3243848 3244318 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mpt:Mpe_A2955 putative TolR-like translocation protein; biopolymer transport protein ExbD/TolR 3243848..3244318 Leptothrix cholodnii SP-6 6159735 YP_001791973.1 CDS Lcho_2943 NC_010524.1 3244322 3245338 D TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: ajs:Ajs_2773 TonB family protein; protein TolA 3244322..3245338 Leptothrix cholodnii SP-6 6159736 YP_001791974.1 CDS Lcho_2944 NC_010524.1 3245412 3246812 D KEGG: mpt:Mpe_A2511 conserved hypothetical HD-GYP hydrolase domain containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3245412..3246812 Leptothrix cholodnii SP-6 6159737 YP_001791975.1 CDS Lcho_2945 NC_010524.1 3246824 3249370 D KEGG: mpt:Mpe_A2510 signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3246824..3249370 Leptothrix cholodnii SP-6 6159711 YP_001791976.1 CDS Lcho_2946 NC_010524.1 3249435 3249737 D KEGG: xcb:XC_2829 hypothetical protein; hypothetical protein 3249435..3249737 Leptothrix cholodnii SP-6 6159712 YP_001791977.1 CDS Lcho_2947 NC_010524.1 3249754 3250878 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mex:Mext_4798 2-alkenal reductase; 2-alkenal reductase complement(3249754..3250878) Leptothrix cholodnii SP-6 6159713 YP_001791978.1 CDS Lcho_2948 NC_010524.1 3251005 3251121 D hypothetical protein 3251005..3251121 Leptothrix cholodnii SP-6 6159714 YP_001791979.1 CDS Lcho_2949 NC_010524.1 3251121 3252008 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: reh:H16_A3687 putative chloramphenicol sensitive permease; transporter DMT superfamily protein 3251121..3252008 Leptothrix cholodnii SP-6 6159715 YP_001791980.1 CDS Lcho_2950 NC_010524.1 3252040 3253377 D KEGG: mpt:Mpe_A2215 hypothetical protein; hypothetical protein 3252040..3253377 Leptothrix cholodnii SP-6 6159716 YP_001791981.1 CDS Lcho_2951 NC_010524.1 3253395 3253805 R PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: cch:Cag_1325 nucleic acid-binding protein,contains PIN domain; PilT domain-containing protein complement(3253395..3253805) Leptothrix cholodnii SP-6 6159717 YP_001791982.1 CDS Lcho_2952 NC_010524.1 3253819 3254052 R KEGG: eba:ebD16 hypothetical protein; hypothetical protein complement(3253819..3254052) Leptothrix cholodnii SP-6 6160391 YP_001791983.1 CDS Lcho_2954 NC_010524.1 3254528 3255202 R KEGG: bfs:BF1531 hypothetical protein; hypothetical protein complement(3254528..3255202) Leptothrix cholodnii SP-6 6160393 YP_001791984.1 CDS Lcho_2955 NC_010524.1 3255202 3256251 R PFAM: protein of unknown function DUF262; KEGG: bfs:BF1532 hypothetical protein; hypothetical protein complement(3255202..3256251) Leptothrix cholodnii SP-6 6160394 YP_001791985.1 CDS Lcho_2956 NC_010524.1 3256555 3257034 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bpt:Bpet0843 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase complement(3256555..3257034) Leptothrix cholodnii SP-6 6160395 YP_001791986.1 CDS Lcho_2957 NC_010524.1 3257259 3257849 D PFAM: CBS domain containing protein; KEGG: tbd:Tbd_0664 hypothetical protein; hypothetical protein 3257259..3257849 Leptothrix cholodnii SP-6 6160396 YP_001791987.1 CDS Lcho_2958 NC_010524.1 3257925 3258560 D PFAM: Glutathione S-transferase domain; KEGG: azo:azo2267 putative glutathione transferase; glutathione S-transferase domain-containing protein 3257925..3258560 Leptothrix cholodnii SP-6 6160397 YP_001791988.1 CDS Lcho_2959 NC_010524.1 3258702 3260579 D PFAM: NERD domain protein; KEGG: rso:RS02993 hypothetical protein; NERD domain-containing protein 3258702..3260579 Leptothrix cholodnii SP-6 6160398 YP_001791989.1 CDS Lcho_2962 NC_010524.1 3262158 3263213 R PFAM: DNA/RNA non-specific endonuclease; KEGG: xcv:XCV3882 putative endonuclease precursor; DNA/RNA non-specific endonuclease complement(3262158..3263213) Leptothrix cholodnii SP-6 6160400 YP_001791990.1 CDS Lcho_2963 NC_010524.1 3263344 3263592 R TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: eba:ebD102 hypothetical protein; addiction module antitoxin complement(3263344..3263592) Leptothrix cholodnii SP-6 6160401 YP_001791991.1 CDS Lcho_2964 NC_010524.1 3263604 3263846 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: eba:ebD103 putative antitoxin of toxin-antitoxin stability system; prevent-host-death family protein complement(3263604..3263846) Leptothrix cholodnii SP-6 6160402 YP_001791992.1 CDS Lcho_2965 NC_010524.1 3263989 3265809 D PFAM: creatinase; peptidase M24; KEGG: mpt:Mpe_A2217 putative peptidase, M24 family protein; peptidase M24 3263989..3265809 Leptothrix cholodnii SP-6 6160403 YP_001791993.1 CDS Lcho_2966 NC_010524.1 3265806 3267596 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tbd:Tbd_0660 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3265806..3267596) Leptothrix cholodnii SP-6 6160404 YP_001791994.1 CDS Lcho_2967 NC_010524.1 3267977 3270835 R KEGG: mpt:Mpe_A2083 hypothetical protein; hypothetical protein complement(3267977..3270835) Leptothrix cholodnii SP-6 6160448 YP_001791995.1 CDS Lcho_2968 NC_010524.1 3270868 3272601 R KEGG: mpt:Mpe_A2113 NAD(+) synthase (glutamine-hydrolyzing); TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; NAD+ synthetase complement(3270868..3272601) Leptothrix cholodnii SP-6 6160449 YP_001791996.1 CDS Lcho_2969 NC_010524.1 3272807 3273952 D PFAM: protein of unknown function DUF482; KEGG: mpt:Mpe_A2114 hypothetical protein; hypothetical protein 3272807..3273952 Leptothrix cholodnii SP-6 6160450 YP_001791997.1 CDS Lcho_2970 NC_010524.1 3274188 3274637 D KEGG: dac:Daci_0558 hypothetical protein; hypothetical protein 3274188..3274637 Leptothrix cholodnii SP-6 6160451 YP_001791998.1 CDS Lcho_2971 NC_010524.1 3274646 3276439 R PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: ppf:Pput_3498 ABC transporter domain protein; ABC transporter complement(3274646..3276439) Leptothrix cholodnii SP-6 6160452 YP_001791999.1 CDS Lcho_2972 NC_010524.1 3276558 3277097 R PFAM: Inorganic pyrophosphatase; KEGG: mpt:Mpe_A2120 inorganic diphosphatase; inorganic diphosphatase complement(3276558..3277097) Leptothrix cholodnii SP-6 6160453 YP_001792000.1 CDS hppA NC_010524.1 3277387 3279525 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3277387..3279525 Leptothrix cholodnii SP-6 6160454 YP_001792001.1 CDS Lcho_2974 NC_010524.1 3279829 3281070 D TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: aav:Aave_2488 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase 3279829..3281070 Leptothrix cholodnii SP-6 6160599 YP_001792002.1 CDS Lcho_2975 NC_010524.1 3281143 3281817 D TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: mpt:Mpe_A2296 putative electron transport-related protein; RnfABCDGE type electron transport complex subunit B 3281143..3281817 Leptothrix cholodnii SP-6 6160600 YP_001792003.1 CDS Lcho_2976 NC_010524.1 3281841 3282752 R KEGG: pol:Bpro_1716 hypothetical protein; hypothetical protein complement(3281841..3282752) Leptothrix cholodnii SP-6 6160601 YP_001792004.1 CDS Lcho_2977 NC_010524.1 3283123 3284412 D PFAM: integrase family protein; KEGG: bam:Bamb_0912 phage integrase family protein; integrase family protein 3283123..3284412 Leptothrix cholodnii SP-6 6160603 YP_001792005.1 CDS Lcho_2978 NC_010524.1 3284912 3285184 D PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 3284912..3285184 Leptothrix cholodnii SP-6 6160604 YP_001792006.1 CDS Lcho_2979 NC_010524.1 3285184 3285459 D hypothetical protein 3285184..3285459 Leptothrix cholodnii SP-6 6161438 YP_001792007.1 CDS Lcho_2980 NC_010524.1 3285680 3285898 D hypothetical protein 3285680..3285898 Leptothrix cholodnii SP-6 6161439 YP_001792008.1 CDS Lcho_2981 NC_010524.1 3285891 3286097 D hypothetical protein 3285891..3286097 Leptothrix cholodnii SP-6 6161440 YP_001792009.1 CDS Lcho_2982 NC_010524.1 3286099 3286626 D hypothetical protein 3286099..3286626 Leptothrix cholodnii SP-6 6161441 YP_001792010.1 CDS Lcho_2983 NC_010524.1 3286623 3287438 D KEGG: pna:Pnap_0964 hypothetical protein; hypothetical protein 3286623..3287438 Leptothrix cholodnii SP-6 6161442 YP_001792011.1 CDS Lcho_2984 NC_010524.1 3287435 3289063 D KEGG: pna:Pnap_0963 hypothetical protein; hypothetical protein 3287435..3289063 Leptothrix cholodnii SP-6 6161443 YP_001792012.1 CDS Lcho_2985 NC_010524.1 3289408 3289941 D KEGG: dac:Daci_4688 hypothetical protein; hypothetical protein 3289408..3289941 Leptothrix cholodnii SP-6 6161444 YP_001792013.1 CDS Lcho_2986 NC_010524.1 3289916 3290386 D hypothetical protein 3289916..3290386 Leptothrix cholodnii SP-6 6162640 YP_001792014.1 CDS Lcho_2987 NC_010524.1 3290419 3290697 D hypothetical protein 3290419..3290697 Leptothrix cholodnii SP-6 6162641 YP_001792015.1 CDS Lcho_2988 NC_010524.1 3290684 3292486 D PFAM: peptidase U35 phage prohead HK97; KEGG: rsq:Rsph17025_2821 peptidase U35, phage prohead HK97; peptidase U35 phage prohead HK97 3290684..3292486 Leptothrix cholodnii SP-6 6162642 YP_001792016.1 CDS Lcho_2989 NC_010524.1 3292686 3293096 D hypothetical protein 3292686..3293096 Leptothrix cholodnii SP-6 6162643 YP_001792017.1 CDS Lcho_2990 NC_010524.1 3293345 3293818 R KEGG: rfr:Rfer_0046 cytochrome c family protein, putative; cytochrome c family protein complement(3293345..3293818) Leptothrix cholodnii SP-6 6162644 YP_001792018.1 CDS Lcho_2991 NC_010524.1 3293978 3295684 D KEGG: bba:Bd3194 hypothetical protein; hypothetical protein 3293978..3295684 Leptothrix cholodnii SP-6 6162645 YP_001792019.1 CDS Lcho_2992 NC_010524.1 3295737 3296816 R KEGG: ajs:Ajs_2860 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(3295737..3296816) Leptothrix cholodnii SP-6 6162646 YP_001792020.1 CDS Lcho_2993 NC_010524.1 3296856 3298493 R PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: mpt:Mpe_A2516 vinylacetyl-CoA delta-isomerase; vinylacetyl-CoA Delta-isomerase complement(3296856..3298493) Leptothrix cholodnii SP-6 6163840 YP_001792021.1 CDS Lcho_2994 NC_010524.1 3298644 3299189 D PFAM: isochorismatase hydrolase; KEGG: mpt:Mpe_A2514 hypothetical protein; isochorismatase hydrolase 3298644..3299189 Leptothrix cholodnii SP-6 6163841 YP_001792022.1 CDS Lcho_2995 NC_010524.1 3299215 3300063 R PFAM: protein of unknown function RIO1; KEGG: mpt:Mpe_A1034 RIO-type serine/threonine protein kinase; hypothetical protein complement(3299215..3300063) Leptothrix cholodnii SP-6 6163842 YP_001792023.1 CDS Lcho_2996 NC_010524.1 3300066 3302339 R PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: gox:GOX1762 putative RNA helicase; helicase domain-containing protein complement(3300066..3302339) Leptothrix cholodnii SP-6 6163843 YP_001792024.1 CDS Lcho_2997 NC_010524.1 3302398 3303831 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bxe:Bxe_A4436 ATP-dependent RNA helicase DbpA; DEAD/DEAH box helicase 3302398..3303831 Leptothrix cholodnii SP-6 6163844 YP_001792025.1 CDS Lcho_2998 NC_010524.1 3304005 3306266 D KEGG: xac:XAC2202 hemolysin secretion protein B; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; type I secretion system ATPase 3304005..3306266 Leptothrix cholodnii SP-6 6163845 YP_001792026.1 CDS Lcho_3000 NC_010524.1 3307049 3307522 D KEGG: aav:Aave_4358 transposition helper protein; transposition helper protein 3307049..3307522 Leptothrix cholodnii SP-6 6163913 YP_001792027.1 CDS Lcho_3001 NC_010524.1 3307519 3308607 D PFAM: Integrase catalytic region; KEGG: bpt:Bpet3733 putative transposase; integrase catalytic subunit 3307519..3308607 Leptothrix cholodnii SP-6 6163914 YP_001792028.1 CDS Lcho_3002 NC_010524.1 3309463 3310350 D hypothetical protein 3309463..3310350 Leptothrix cholodnii SP-6 6163915 YP_001792029.1 CDS Lcho_3004 NC_010524.1 3314124 3315104 R PFAM: Integrase catalytic region; KEGG: bxe:Bxe_B0052 putative transposase; integrase catalytic subunit complement(3314124..3315104) Leptothrix cholodnii SP-6 6163917 YP_001792030.1 CDS Lcho_3005 NC_010524.1 3317961 3318941 D PFAM: Integrase catalytic region; KEGG: bxe:Bxe_B0052 putative transposase; integrase catalytic subunit 3317961..3318941 Leptothrix cholodnii SP-6 6163918 YP_001792031.1 CDS Lcho_3006 NC_010524.1 3321035 3322459 R PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc1556 probable oxidoreductase protein; FAD linked oxidase domain-containing protein complement(3321035..3322459) Leptothrix cholodnii SP-6 6163919 YP_001792032.1 CDS Lcho_3007 NC_010524.1 3322464 3323525 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: mpt:Mpe_A3247 conserved hypothetical dioxygenase; 2-nitropropane dioxygenase complement(3322464..3323525) Leptothrix cholodnii SP-6 6160850 YP_001792033.1 CDS Lcho_3008 NC_010524.1 3323694 3324119 D PFAM: Domain of unknown function DUF1924; KEGG: pna:Pnap_1532 mono-heme class I cytochrome c; hypothetical protein 3323694..3324119 Leptothrix cholodnii SP-6 6160851 YP_001792034.1 CDS Lcho_3009 NC_010524.1 3324116 3324637 D KEGG: pna:Pnap_1533 diheme cytochrome c; hypothetical protein 3324116..3324637 Leptothrix cholodnii SP-6 6160852 YP_001792035.1 CDS Lcho_3010 NC_010524.1 3324634 3325344 D PFAM: cytochrome B561; KEGG: bvi:Bcep1808_6299 cytochrome b561; cytochrome B561 3324634..3325344 Leptothrix cholodnii SP-6 6160853 YP_001792036.1 CDS Lcho_3011 NC_010524.1 3325356 3326021 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0503 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3325356..3326021 Leptothrix cholodnii SP-6 6160854 YP_001792037.1 CDS Lcho_3012 NC_010524.1 3326021 3327448 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_0504 periplasmic sensor signal transduction histidine kinase; histidine kinase 3326021..3327448 Leptothrix cholodnii SP-6 6160855 YP_001792038.1 CDS Lcho_3013 NC_010524.1 3327570 3329243 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: rpa:RPA0955 putative 5'-nucleotidase family protein; 5'-nucleotidase domain-containing protein 3327570..3329243 Leptothrix cholodnii SP-6 6160856 YP_001792039.1 CDS Lcho_3014 NC_010524.1 3329323 3330405 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 3329323..3330405 Leptothrix cholodnii SP-6 6161080 YP_001792040.1 CDS Lcho_3015 NC_010524.1 3330398 3331606 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tbd:Tbd_0950 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 3330398..3331606 Leptothrix cholodnii SP-6 6161081 YP_001792041.1 CDS Lcho_3016 NC_010524.1 3331659 3332714 D KEGG: mgm:Mmc1_2535 ABC-type nitrate/sulfonate/bicarbonate transport system protein; ABC-type nitrate/sulfonate/bicarbonate transport system protein 3331659..3332714 Leptothrix cholodnii SP-6 6161082 YP_001792042.1 CDS Lcho_3017 NC_010524.1 3332711 3334462 D KEGG: rfr:Rfer_3932 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 3332711..3334462 Leptothrix cholodnii SP-6 6161083 YP_001792043.1 CDS Lcho_3018 NC_010524.1 3334468 3337911 D KEGG: aav:Aave_0649 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3334468..3337911 Leptothrix cholodnii SP-6 6161084 YP_001792044.1 CDS Lcho_3019 NC_010524.1 3338092 3339129 D KEGG: aha:AHA_2711 hypothetical protein; hypothetical protein 3338092..3339129 Leptothrix cholodnii SP-6 6161085 YP_001792045.1 CDS Lcho_3020 NC_010524.1 3339160 3339879 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A0770 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3339160..3339879) Leptothrix cholodnii SP-6 6161086 YP_001792046.1 CDS Lcho_3021 NC_010524.1 3339890 3340588 R PFAM: isochorismatase hydrolase; KEGG: scl:sce4416 putative isochorismatase; isochorismatase hydrolase complement(3339890..3340588) Leptothrix cholodnii SP-6 6160843 YP_001792047.1 CDS Lcho_3022 NC_010524.1 3340585 3342264 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B1372 ABC transporter, duplicated ATPase subunits; ABC transporter-like protein complement(3340585..3342264) Leptothrix cholodnii SP-6 6160844 YP_001792048.1 CDS Lcho_3023 NC_010524.1 3342377 3343078 R PFAM: isochorismatase hydrolase; KEGG: mex:Mext_1705 isochorismatase hydrolase; isochorismatase hydrolase complement(3342377..3343078) Leptothrix cholodnii SP-6 6160845 YP_001792049.1 CDS Lcho_3024 NC_010524.1 3343092 3344015 R PFAM: inner-membrane translocator; KEGG: mlo:mlr7063 sugar ABC transporter, permease protein; inner-membrane translocator complement(3343092..3344015) Leptothrix cholodnii SP-6 6160846 YP_001792050.1 CDS Lcho_3025 NC_010524.1 3344019 3345131 R PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A0768 ABC transporter permease protein; inner-membrane translocator complement(3344019..3345131) Leptothrix cholodnii SP-6 6160847 YP_001792051.1 CDS Lcho_3026 NC_010524.1 3345147 3346292 R PFAM: basic membrane lipoprotein; KEGG: mpt:Mpe_A0769 bmp family protein; basic membrane lipoprotein complement(3345147..3346292) Leptothrix cholodnii SP-6 6160848 YP_001792052.1 CDS Lcho_3027 NC_010524.1 3346343 3346759 R KEGG: mpt:Mpe_A0771 hypothetical protein; hypothetical protein complement(3346343..3346759) Leptothrix cholodnii SP-6 6160849 YP_001792053.1 CDS Lcho_3028 NC_010524.1 3346780 3348183 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(3346780..3348183) Leptothrix cholodnii SP-6 6162465 YP_001792054.1 CDS Lcho_3029 NC_010524.1 3348180 3348377 R hypothetical protein complement(3348180..3348377) Leptothrix cholodnii SP-6 6162466 YP_001792055.1 CDS Lcho_3030 NC_010524.1 3348374 3348583 R hypothetical protein complement(3348374..3348583) Leptothrix cholodnii SP-6 6162467 YP_001792056.1 CDS Lcho_3031 NC_010524.1 3348587 3350452 R TIGRFAM: allophanate hydrolase; PFAM: Amidase; KEGG: mpt:Mpe_A0773 UreA amidolyase; allophanate hydrolase complement(3348587..3350452) Leptothrix cholodnii SP-6 6162468 YP_001792057.1 CDS Lcho_3032 NC_010524.1 3350774 3351856 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: noc:Noc_1881 helix-turn-helix, fis-type; putative sigma-54 specific transcriptional regulator 3350774..3351856 Leptothrix cholodnii SP-6 6162469 YP_001792058.1 CDS Lcho_3033 NC_010524.1 3352076 3352291 D KEGG: hch:HCH_04226 hypothetical protein; hypothetical protein 3352076..3352291 Leptothrix cholodnii SP-6 6162470 YP_001792059.1 CDS Lcho_3034 NC_010524.1 3352339 3352938 D KEGG: mxa:MXAN_4492 hypothetical protein; hypothetical protein 3352339..3352938 Leptothrix cholodnii SP-6 6162471 YP_001792060.1 CDS Lcho_3035 NC_010524.1 3352935 3353744 D KEGG: mxa:MXAN_4493 hypothetical protein; hypothetical protein 3352935..3353744 Leptothrix cholodnii SP-6 6162107 YP_001792061.1 CDS Lcho_3036 NC_010524.1 3353799 3355589 D PFAM: tail sheath protein; KEGG: mxa:MXAN_4494 putative phage tail sheath protein; tail sheath protein 3353799..3355589 Leptothrix cholodnii SP-6 6162108 YP_001792062.1 CDS Lcho_3037 NC_010524.1 3355617 3356060 D TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: mxa:MXAN_4495 hypothetical protein; phage tail protein 3355617..3356060 Leptothrix cholodnii SP-6 6162109 YP_001792063.1 CDS Lcho_3038 NC_010524.1 3356080 3357684 D KEGG: mxa:MXAN_4496 hypothetical protein; hypothetical protein 3356080..3357684 Leptothrix cholodnii SP-6 6162110 YP_001792064.1 CDS Lcho_3039 NC_010524.1 3357681 3358163 D TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: mxa:MXAN_4497 hypothetical protein; phage tail protein 3357681..3358163 Leptothrix cholodnii SP-6 6162111 YP_001792065.1 CDS Lcho_3040 NC_010524.1 3358165 3359139 D KEGG: mxa:MXAN_4498 hypothetical protein; hypothetical protein 3358165..3359139 Leptothrix cholodnii SP-6 6162112 YP_001792066.1 CDS Lcho_3041 NC_010524.1 3359226 3359399 D hypothetical protein 3359226..3359399 Leptothrix cholodnii SP-6 6162113 YP_001792067.1 CDS Lcho_3042 NC_010524.1 3359423 3360508 D KEGG: mxa:MXAN_4500 hypothetical protein; hypothetical protein 3359423..3360508 Leptothrix cholodnii SP-6 6161569 YP_001792068.1 CDS Lcho_3043 NC_010524.1 3360526 3361215 D PFAM: Rhs element Vgr protein; KEGG: eli:ELI_09320 hypothetical protein; Rhs element Vgr protein 3360526..3361215 Leptothrix cholodnii SP-6 6161570 YP_001792069.1 CDS Lcho_3044 NC_010524.1 3361205 3362872 D KEGG: mxa:MXAN_4502 hypothetical protein; hypothetical protein 3361205..3362872 Leptothrix cholodnii SP-6 6161571 YP_001792070.1 CDS Lcho_3045 NC_010524.1 3362869 3363261 D PFAM: GPW/gp25 family protein; KEGG: mxa:MXAN_4503 baseplate assembly protein W; GPW/gp25 family protein 3362869..3363261 Leptothrix cholodnii SP-6 6161572 YP_001792071.1 CDS Lcho_3046 NC_010524.1 3363265 3365547 D KEGG: mxa:MXAN_4504 hypothetical protein; hypothetical protein 3363265..3365547 Leptothrix cholodnii SP-6 6161573 YP_001792072.1 CDS Lcho_3047 NC_010524.1 3365547 3368396 D TIGRFAM: phage tail protein; KEGG: mxa:MXAN_4505 putative phage tail protein; phage tail protein 3365547..3368396 Leptothrix cholodnii SP-6 6161574 YP_001792073.1 CDS Lcho_3048 NC_010524.1 3368412 3368726 D hypothetical protein 3368412..3368726 Leptothrix cholodnii SP-6 6161575 YP_001792074.1 CDS Lcho_3049 NC_010524.1 3368737 3369090 D KEGG: aga:AgaP_27410 ENSANGP00000031521; hypothetical protein 3368737..3369090 Leptothrix cholodnii SP-6 6163666 YP_001792075.1 CDS Lcho_3050 NC_010524.1 3369087 3370016 D KEGG: mxa:MXAN_4506 hypothetical protein; hypothetical protein 3369087..3370016 Leptothrix cholodnii SP-6 6163667 YP_001792076.1 CDS Lcho_3051 NC_010524.1 3370039 3371973 D KEGG: mxa:MXAN_4507 hypothetical protein; hypothetical protein 3370039..3371973 Leptothrix cholodnii SP-6 6163668 YP_001792077.1 CDS Lcho_3052 NC_010524.1 3372032 3377014 D KEGG: mxa:MXAN_4508 hypothetical protein; hypothetical protein 3372032..3377014 Leptothrix cholodnii SP-6 6163669 YP_001792078.1 CDS Lcho_3053 NC_010524.1 3377018 3378640 D KEGG: mxa:MXAN_4509 hypothetical protein; hypothetical protein 3377018..3378640 Leptothrix cholodnii SP-6 6163670 YP_001792079.1 CDS Lcho_3054 NC_010524.1 3378637 3380814 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_4510 ATPase, AAA family; ATPase central domain-containing protein 3378637..3380814 Leptothrix cholodnii SP-6 6163671 YP_001792080.1 CDS Lcho_3055 NC_010524.1 3380811 3382415 D PFAM: OmpA/MotB domain protein; KEGG: dsh:Dshi_2548 hypothetical protein; OmpA/MotB domain-containing protein 3380811..3382415 Leptothrix cholodnii SP-6 6163672 YP_001792081.1 CDS Lcho_3056 NC_010524.1 3382424 3382825 D hypothetical protein 3382424..3382825 Leptothrix cholodnii SP-6 6163110 YP_001792082.1 CDS Lcho_3057 NC_010524.1 3382868 3383230 R KEGG: mpt:Mpe_A2139 hypothetical protein; hypothetical protein complement(3382868..3383230) Leptothrix cholodnii SP-6 6163111 YP_001792083.1 CDS Lcho_3058 NC_010524.1 3383327 3385315 R PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A3732 putative transmembrane protein; phospholipid/glycerol acyltransferase complement(3383327..3385315) Leptothrix cholodnii SP-6 6163112 YP_001792084.1 CDS Lcho_3059 NC_010524.1 3385368 3386165 R KEGG: ajs:Ajs_3873 hypothetical protein; hypothetical protein complement(3385368..3386165) Leptothrix cholodnii SP-6 6163113 YP_001792085.1 CDS Lcho_3060 NC_010524.1 3386181 3386645 R KEGG: aav:Aave_4489 hypothetical protein; hypothetical protein complement(3386181..3386645) Leptothrix cholodnii SP-6 6163114 YP_001792086.1 CDS Lcho_3061 NC_010524.1 3386689 3387207 R PFAM: YiaAB two helix domain protein; KEGG: pol:Bpro_0458 hypothetical protein; YiaAB two helix domain-containing protein complement(3386689..3387207) Leptothrix cholodnii SP-6 6163115 YP_001792087.1 CDS Lcho_3062 NC_010524.1 3387348 3388085 D PFAM: helix-turn-helix domain protein; KEGG: ajs:Ajs_3879 helix-turn-helix domain protein; helix-turn-helix domain-containing protein 3387348..3388085 Leptothrix cholodnii SP-6 6163116 YP_001792088.1 CDS Lcho_3063 NC_010524.1 3388179 3390155 R TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A1385 acetyl-coenzyme A synthetase; acetate--CoA ligase complement(3388179..3390155) Leptothrix cholodnii SP-6 6162718 YP_001792089.1 CDS Lcho_3064 NC_010524.1 3390383 3390976 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A1384 hypothetical protein; hypothetical protein 3390383..3390976 Leptothrix cholodnii SP-6 6162719 YP_001792090.1 CDS Lcho_3065 NC_010524.1 3391075 3392601 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: mpt:Mpe_A1382 putative fumarate hydratase; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 3391075..3392601 Leptothrix cholodnii SP-6 6162720 YP_001792091.1 CDS Lcho_3066 NC_010524.1 3392603 3393961 R PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_3144 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(3392603..3393961) Leptothrix cholodnii SP-6 6162721 YP_001792092.1 CDS Lcho_3067 NC_010524.1 3394000 3394770 D PFAM: pseudouridine synthase; KEGG: pna:Pnap_1276 pseudouridine synthase; pseudouridine synthase 3394000..3394770 Leptothrix cholodnii SP-6 6162722 YP_001792093.1 CDS Lcho_3068 NC_010524.1 3394959 3395990 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tbd:Tbd_0099 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3394959..3395990) Leptothrix cholodnii SP-6 6162723 YP_001792094.1 CDS Lcho_3069 NC_010524.1 3395990 3397270 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dar:Daro_2440 UDP-glucose/GDP-mannose dehydrogenase:6-phosphogluconate dehydrogenase, NAD-binding; nucleotide sugar dehydrogenase complement(3395990..3397270) Leptothrix cholodnii SP-6 6162724 YP_001792095.1 CDS Lcho_3070 NC_010524.1 3397431 3398591 R KEGG: rpb:RPB_3755 hypothetical protein; cellulose biosynthesis protein CelD complement(3397431..3398591) Leptothrix cholodnii SP-6 6162633 YP_001792096.1 CDS Lcho_3071 NC_010524.1 3398745 3399926 R KEGG: acr:Acry_1801 protein involved in cellulose biosynthesis (CelD)-like protein; cellulose biosynthesis protein CelD-like protein complement(3398745..3399926) Leptothrix cholodnii SP-6 6162634 YP_001792097.1 CDS Lcho_3072 NC_010524.1 3400053 3401108 R PFAM: acyltransferase 3; KEGG: rpb:RPB_0504 acyltransferase 3; acyltransferase 3 complement(3400053..3401108) Leptothrix cholodnii SP-6 6162635 YP_001792098.1 CDS Lcho_3073 NC_010524.1 3401631 3403106 D PFAM: polysaccharide biosynthesis protein; KEGG: ppd:Ppro_2862 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3401631..3403106 Leptothrix cholodnii SP-6 6162636 YP_001792099.1 CDS Lcho_3074 NC_010524.1 3403152 3404117 D PFAM: polysaccharide deacetylase; KEGG: mav:MAV_1144 polysaccharide deacetylase domain protein; polysaccharide deacetylase 3403152..3404117 Leptothrix cholodnii SP-6 6162637 YP_001792100.1 CDS Lcho_3075 NC_010524.1 3404130 3405254 D PFAM: glycosyl transferase family 2; KEGG: scl:sce0862 glycosyltransferase; glycosyl transferase family protein 3404130..3405254 Leptothrix cholodnii SP-6 6162638 YP_001792101.1 CDS Lcho_3076 NC_010524.1 3405272 3406048 D PFAM: polysaccharide deacetylase; KEGG: gme:Gmet_2023 polysaccharide deacetylase; polysaccharide deacetylase 3405272..3406048 Leptothrix cholodnii SP-6 6162639 YP_001792102.1 CDS Lcho_3077 NC_010524.1 3406017 3407531 D PFAM: O-antigen polymerase; KEGG: cau:Caur_3256 O-antigen polymerase; O-antigen polymerase 3406017..3407531 Leptothrix cholodnii SP-6 6160469 YP_001792103.1 CDS Lcho_3078 NC_010524.1 3407558 3409060 D PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_3580 O-antigen polymerase; O-antigen polymerase 3407558..3409060 Leptothrix cholodnii SP-6 6160470 YP_001792104.1 CDS Lcho_3079 NC_010524.1 3409045 3410055 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase complement(3409045..3410055) Leptothrix cholodnii SP-6 6160471 YP_001792105.1 CDS Lcho_3080 NC_010524.1 3410081 3411199 R PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3097 glycosyl transferase group 1; group 1 glycosyl transferase complement(3410081..3411199) Leptothrix cholodnii SP-6 6160472 YP_001792106.1 CDS Lcho_3081 NC_010524.1 3411255 3412265 R KEGG: sgl:SG2199 hypothetical protein; hypothetical protein complement(3411255..3412265) Leptothrix cholodnii SP-6 6160473 YP_001792107.1 CDS Lcho_3082 NC_010524.1 3412340 3413410 R hypothetical protein complement(3412340..3413410) Leptothrix cholodnii SP-6 6160474 YP_001792108.1 CDS Lcho_3083 NC_010524.1 3413494 3413652 D hypothetical protein 3413494..3413652 Leptothrix cholodnii SP-6 6160475 YP_001792109.1 CDS Lcho_3084 NC_010524.1 3413785 3414924 R PFAM: glycosyl transferase group 1; KEGG: scl:sce8918 glycosyltransferase; group 1 glycosyl transferase complement(3413785..3414924) Leptothrix cholodnii SP-6 6163472 YP_001792110.1 CDS Lcho_3085 NC_010524.1 3415151 3416380 D PFAM: glycosyl transferase group 1; KEGG: acr:Acry_0205 glycosyl transferase, group 1; group 1 glycosyl transferase 3415151..3416380 Leptothrix cholodnii SP-6 6163473 YP_001792111.1 CDS Lcho_3086 NC_010524.1 3416377 3417144 D PFAM: protein of unknown function DUF218; KEGG: scl:sce0863 hypothetical protein; hypothetical protein 3416377..3417144 Leptothrix cholodnii SP-6 6163474 YP_001792112.1 CDS Lcho_3087 NC_010524.1 3417234 3418535 D hypothetical protein 3417234..3418535 Leptothrix cholodnii SP-6 6163475 YP_001792113.1 CDS Lcho_3088 NC_010524.1 3418627 3419697 R hypothetical protein complement(3418627..3419697) Leptothrix cholodnii SP-6 6163476 YP_001792114.1 CDS Lcho_3089 NC_010524.1 3420762 3421598 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: mpt:Mpe_A1113 putative two-component system, regulatory protein; LytTR family two component transcriptional regulator complement(3420762..3421598) Leptothrix cholodnii SP-6 6163477 YP_001792115.1 CDS Lcho_3090 NC_010524.1 3421601 3422650 R PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: rfr:Rfer_1711 histidine kinase internal protein; histidine kinase internal region complement(3421601..3422650) Leptothrix cholodnii SP-6 6163478 YP_001792116.1 CDS Lcho_3091 NC_010524.1 3422735 3424165 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 3422735..3424165 Leptothrix cholodnii SP-6 6162692 YP_001792117.1 CDS Lcho_3092 NC_010524.1 3424335 3425258 D KEGG: dar:Daro_0889 hypothetical protein; hypothetical protein 3424335..3425258 Leptothrix cholodnii SP-6 6162693 YP_001792118.1 CDS Lcho_3093 NC_010524.1 3425272 3425916 D PFAM: Fimbrial assembly family protein; KEGG: dar:Daro_0890 hypothetical protein; fimbrial assembly family protein 3425272..3425916 Leptothrix cholodnii SP-6 6162694 YP_001792119.1 CDS Lcho_3094 NC_010524.1 3425913 3426578 D KEGG: pca:Pcar_0383 MshA biogenesis protein, MshJ-like; MshA biogenesis protein, MshJ-like protein 3425913..3426578 Leptothrix cholodnii SP-6 6162695 YP_001792120.1 CDS Lcho_3095 NC_010524.1 3426575 3427135 D hypothetical protein 3426575..3427135 Leptothrix cholodnii SP-6 6162696 YP_001792121.1 CDS Lcho_3096 NC_010524.1 3427135 3428868 D TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dar:Daro_0893 type II and III secretion system protein:secretin, N-terminal:secretin/TonB, short N-terminal; pilus (MSHA type) biogenesis protein MshL 3427135..3428868 Leptothrix cholodnii SP-6 6162697 YP_001792122.1 CDS Lcho_3097 NC_010524.1 3428878 3430614 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0879 type II secretion system protein E:general secretory system II, protein E, N-terminal; type II secretion system protein E 3428878..3430614 Leptothrix cholodnii SP-6 6162698 YP_001792123.1 CDS Lcho_3098 NC_010524.1 3430705 3431943 D PFAM: type II secretion system protein; KEGG: dar:Daro_0880 type II secretion system protein; type II secretion system protein 3430705..3431943 Leptothrix cholodnii SP-6 6161707 YP_001792124.1 CDS Lcho_3099 NC_010524.1 3431959 3432117 D hypothetical protein 3431959..3432117 Leptothrix cholodnii SP-6 6161708 YP_001792125.1 CDS Lcho_3100 NC_010524.1 3432135 3432545 D KEGG: rfr:Rfer_3363 methylation; hypothetical protein 3432135..3432545 Leptothrix cholodnii SP-6 6161709 YP_001792126.1 CDS Lcho_3101 NC_010524.1 3432597 3435998 D KEGG: spc:Sputcn32_0573 MSHA biogenesis protein MshQ; hypothetical protein 3432597..3435998 Leptothrix cholodnii SP-6 6161710 YP_001792127.1 CDS Lcho_3102 NC_010524.1 3435998 3436471 D KEGG: dar:Daro_0884 prokaryotic N-terminal methylation site; hypothetical protein 3435998..3436471 Leptothrix cholodnii SP-6 6161711 YP_001792128.1 CDS Lcho_3103 NC_010524.1 3436461 3436934 D KEGG: rfr:Rfer_3340 hypothetical protein; hypothetical protein 3436461..3436934 Leptothrix cholodnii SP-6 6161712 YP_001792129.1 CDS Lcho_3104 NC_010524.1 3436924 3437817 D KEGG: rfr:Rfer_3339 methylation; hypothetical protein 3436924..3437817 Leptothrix cholodnii SP-6 6161713 YP_001792130.1 CDS Lcho_3105 NC_010524.1 3437814 3438263 D KEGG: dar:Daro_0887 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 3437814..3438263 Leptothrix cholodnii SP-6 6161362 YP_001792131.1 CDS Lcho_3106 NC_010524.1 3438713 3440533 D TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A3393 putative methanol dehydrogenase protein, large subunit; methanol/ethanol family PQQ-dependent dehydrogenase 3438713..3440533 Leptothrix cholodnii SP-6 6161363 YP_001792132.1 CDS Lcho_3107 NC_010524.1 3440678 3441061 D KEGG: mpt:Mpe_A3394 hypothetical protein; hypothetical protein 3440678..3441061 Leptothrix cholodnii SP-6 6161364 YP_001792133.1 CDS Lcho_3108 NC_010524.1 3441058 3441939 D SMART: extracellular solute-binding protein family 3; KEGG: mpt:Mpe_A3395 MxaJ protein; extracellular solute-binding protein 3441058..3441939 Leptothrix cholodnii SP-6 6161365 YP_001792134.1 CDS Lcho_3109 NC_010524.1 3441956 3442687 D KEGG: mpt:Mpe_A3397 hypothetical protein; hypothetical protein 3441956..3442687 Leptothrix cholodnii SP-6 6161366 YP_001792135.1 CDS Lcho_3110 NC_010524.1 3442704 3443069 D KEGG: mpt:Mpe_A3398 hypothetical protein; hypothetical protein 3442704..3443069 Leptothrix cholodnii SP-6 6161367 YP_001792136.1 CDS Lcho_3111 NC_010524.1 3443114 3443947 D PFAM: Sulphur oxidation protein SoxZ; KEGG: mpt:Mpe_A2085 hypothetical protein; sulfur oxidation protein SoxZ 3443114..3443947 Leptothrix cholodnii SP-6 6161368 YP_001792137.1 CDS Lcho_3112 NC_010524.1 3443959 3444528 R KEGG: bxe:Bxe_B2422 hypothetical protein; hypothetical protein complement(3443959..3444528) Leptothrix cholodnii SP-6 6164067 YP_001792138.1 CDS Lcho_3113 NC_010524.1 3444712 3445644 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mpt:Mpe_A3013 hypothetical protein; hypothetical protein 3444712..3445644 Leptothrix cholodnii SP-6 6164068 YP_001792139.1 CDS Lcho_3114 NC_010524.1 3445641 3446177 D KEGG: mpt:Mpe_A3014 MxaD protein; MxaD protein 3445641..3446177 Leptothrix cholodnii SP-6 6164069 YP_001792140.1 CDS Lcho_3115 NC_010524.1 3446180 3447235 D KEGG: mpt:Mpe_A2189 hypothetical protein; hypothetical protein 3446180..3447235 Leptothrix cholodnii SP-6 6164070 YP_001792141.1 CDS Lcho_3116 NC_010524.1 3447225 3448088 D KEGG: mpt:Mpe_A2188 hypothetical protein; hypothetical protein 3447225..3448088 Leptothrix cholodnii SP-6 6164071 YP_001792142.1 CDS Lcho_3117 NC_010524.1 3448085 3448609 D KEGG: mpt:Mpe_A2187 hypothetical protein; hypothetical protein 3448085..3448609 Leptothrix cholodnii SP-6 6164072 YP_001792143.1 CDS Lcho_3118 NC_010524.1 3448635 3449663 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mpt:Mpe_A1582 ACR3 permease; arsenical-resistance protein complement(3448635..3449663) Leptothrix cholodnii SP-6 6164073 YP_001792144.1 CDS Lcho_3119 NC_010524.1 3449737 3450243 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bmu:Bmul_6164 protein tyrosine phosphatase; protein tyrosine phosphatase complement(3449737..3450243) Leptothrix cholodnii SP-6 6164060 YP_001792145.1 CDS Lcho_3120 NC_010524.1 3450261 3450782 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_0488 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3450261..3450782) Leptothrix cholodnii SP-6 6164061 YP_001792146.1 CDS Lcho_3121 NC_010524.1 3450796 3451122 R PFAM: regulatory protein ArsR; KEGG: mpt:Mpe_A1584 TC repressor; ArsR family transcriptional regulator complement(3450796..3451122) Leptothrix cholodnii SP-6 6164062 YP_001792147.1 CDS Lcho_3122 NC_010524.1 3451198 3451563 R hypothetical protein complement(3451198..3451563) Leptothrix cholodnii SP-6 6164063 YP_001792148.1 CDS Lcho_3123 NC_010524.1 3451714 3452796 R PFAM: transposase IS4 family protein; KEGG: eba:ebA3243 transposase, IS5 family; transposase IS4 family protein complement(3451714..3452796) Leptothrix cholodnii SP-6 6164064 YP_001792149.1 CDS Lcho_3124 NC_010524.1 3452926 3453519 R hypothetical protein complement(3452926..3453519) Leptothrix cholodnii SP-6 6164065 YP_001792150.1 CDS Lcho_3125 NC_010524.1 3453526 3453996 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: hch:HCH_03030 predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(3453526..3453996) Leptothrix cholodnii SP-6 6164066 YP_001792151.1 CDS Lcho_3126 NC_010524.1 3454040 3454378 R KEGG: reu:Reut_C6417 hypothetical protein; hypothetical protein complement(3454040..3454378) Leptothrix cholodnii SP-6 6160476 YP_001792152.1 CDS Lcho_3127 NC_010524.1 3454607 3455107 D KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902; hypothetical protein 3454607..3455107 Leptothrix cholodnii SP-6 6160477 YP_001792153.1 CDS Lcho_3128 NC_010524.1 3455538 3456350 R KEGG: fre:Franean1_2180 response regulator receiver protein; response regulator receiver protein complement(3455538..3456350) Leptothrix cholodnii SP-6 6160478 YP_001792154.1 CDS Lcho_3129 NC_010524.1 3457037 3457528 D PFAM: transposase IS3/IS911 family protein; KEGG: aeh:Mlg_2336 hypothetical protein; transposase IS3/IS911 family protein 3457037..3457528 Leptothrix cholodnii SP-6 6160479 YP_001792155.1 CDS Lcho_3130 NC_010524.1 3457525 3458568 D PFAM: Integrase catalytic region; KEGG: sbl:Sbal_4350 integrase, catalytic region; integrase catalytic subunit 3457525..3458568 Leptothrix cholodnii SP-6 6160480 YP_001792156.1 CDS Lcho_3131 NC_010524.1 3458631 3459308 R TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: mpt:Mpe_A2629 putative hydrolase protein; HAD family hydrolase complement(3458631..3459308) Leptothrix cholodnii SP-6 6160481 YP_001792157.1 CDS Lcho_3132 NC_010524.1 3459317 3459862 R TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mpt:Mpe_A2627 putative formaldehyde-activating enzyme; formaldehyde-activating enzyme complement(3459317..3459862) Leptothrix cholodnii SP-6 6160482 YP_001792158.1 CDS Lcho_3133 NC_010524.1 3459906 3460751 R KEGG: mpt:Mpe_A2626 formylmethanofuran dehydrogenase; TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase alpha subunit domain protein; formylmethanofuran dehydrogenase subunit C complement(3459906..3460751) Leptothrix cholodnii SP-6 6161066 YP_001792159.1 CDS Lcho_3134 NC_010524.1 3460748 3461695 R catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin; formylmethanofuran--tetrahydromethanopterin formyltransferase complement(3460748..3461695) Leptothrix cholodnii SP-6 6161067 YP_001792160.1 CDS Lcho_3135 NC_010524.1 3461692 3463377 R TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: mpt:Mpe_A2624 formylmethanofurane dehydrogenase, A subunit, putative; formylmethanofuran dehydrogenase subunit A complement(3461692..3463377) Leptothrix cholodnii SP-6 6161068 YP_001792161.1 CDS Lcho_3136 NC_010524.1 3463374 3464675 R KEGG: mpt:Mpe_A2623 formylmethanofuran dehydrogenase; formylmethanofuran dehydrogenase complement(3463374..3464675) Leptothrix cholodnii SP-6 6161069 YP_001792162.1 CDS Lcho_3137 NC_010524.1 3464965 3465723 R PFAM: histidine biosynthesis protein; KEGG: mpt:Mpe_A2622 HisA/HisF family protein, putative; histidine biosynthesis protein complement(3464965..3465723) Leptothrix cholodnii SP-6 6161070 YP_001792163.1 CDS Lcho_3138 NC_010524.1 3465778 3466809 D PFAM: protein of unknown function DUF201; KEGG: mpt:Mpe_A2621 hypothetical protein; hypothetical protein 3465778..3466809 Leptothrix cholodnii SP-6 6161071 YP_001792164.1 CDS Lcho_3139 NC_010524.1 3466796 3467947 D TIGRFAM: H4MPT-linked C1 transfer pathway protein; KEGG: mpt:Mpe_A2620 S-layer protein, putative; H4MPT-linked C1 transfer pathway protein 3466796..3467947 Leptothrix cholodnii SP-6 6161072 YP_001792165.1 CDS Lcho_3140 NC_010524.1 3467947 3468540 D PFAM: aspartate/glutamate/uridylate kinase; KEGG: mpt:Mpe_A2619 uncharacterized kinase; aspartate/glutamate/uridylate kinase 3467947..3468540 Leptothrix cholodnii SP-6 6162899 YP_001792166.1 CDS Lcho_3141 NC_010524.1 3468587 3469345 R KEGG: mpt:Mpe_A2618 hypothetical protein; hypothetical protein complement(3468587..3469345) Leptothrix cholodnii SP-6 6162900 YP_001792167.1 CDS Lcho_3142 NC_010524.1 3469345 3469932 R KEGG: mpt:Mpe_A2617 hypothetical protein; hypothetical protein complement(3469345..3469932) Leptothrix cholodnii SP-6 6162901 YP_001792168.1 CDS Lcho_3143 NC_010524.1 3469929 3471344 R PFAM: dihydropteroate synthase DHPS; KEGG: mpt:Mpe_A2616 pterin-binding domain protein; dihydropteroate synthase DHPS complement(3469929..3471344) Leptothrix cholodnii SP-6 6162902 YP_001792169.1 CDS Lcho_3144 NC_010524.1 3471323 3471763 R KEGG: mpt:Mpe_A2615 DNA/pantothenate metabolism flavolike protein; DNA/pantothenate metabolism flavolike protein complement(3471323..3471763) Leptothrix cholodnii SP-6 6162903 YP_001792170.1 CDS Lcho_3145 NC_010524.1 3471909 3474026 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A2614 putative transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator complement(3471909..3474026) Leptothrix cholodnii SP-6 6162904 YP_001792171.1 CDS Lcho_3146 NC_010524.1 3474294 3474824 D PFAM: dihydroneopterin aldolase; KEGG: mpt:Mpe_A2613 dihydroneopterin aldolase-like protein; dihydroneopterin aldolase 3474294..3474824 Leptothrix cholodnii SP-6 6162905 YP_001792172.1 CDS Lcho_3147 NC_010524.1 3474886 3475395 R TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mpt:Mpe_A2612 formaldehyde-activating enzyme; formaldehyde-activating enzyme complement(3474886..3475395) Leptothrix cholodnii SP-6 6163319 YP_001792173.1 CDS Lcho_3148 NC_010524.1 3475547 3476443 R PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: mpt:Mpe_A2611 ATP:dephospho-CoA triphosphoribosyl transferase; triphosphoribosyl-dephospho-CoA protein complement(3475547..3476443) Leptothrix cholodnii SP-6 6163320 YP_001792174.1 CDS Lcho_3149 NC_010524.1 3476445 3477443 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: mpt:Mpe_A2610 ribosomal protein S6 modification protein, putative; alpha-L-glutamate ligase complement(3476445..3477443) Leptothrix cholodnii SP-6 6163321 YP_001792175.1 CDS Lcho_3150 NC_010524.1 3477448 3478452 R catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin; N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase complement(3477448..3478452) Leptothrix cholodnii SP-6 6163322 YP_001792176.1 CDS Lcho_3151 NC_010524.1 3478449 3479696 R PFAM: protein of unknown function DUF201; KEGG: mpt:Mpe_A2608 hypothetical protein; hypothetical protein complement(3478449..3479696) Leptothrix cholodnii SP-6 6163323 YP_001792177.1 CDS Lcho_3152 NC_010524.1 3479693 3480604 R PFAM: Methylene-tetrahydromethanopterin dehydrogenase; KEGG: mpt:Mpe_A2607 methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase, putative; methylenetetrahydrofolate dehydrogenase complement(3479693..3480604) Leptothrix cholodnii SP-6 6163324 YP_001792178.1 CDS Lcho_3153 NC_010524.1 3480610 3481737 R TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; KEGG: mpt:Mpe_A2606 kinase, GHMP family, putative; beta-ribofuranosylaminobenzene 5'-phosphate synthase complement(3480610..3481737) Leptothrix cholodnii SP-6 6163325 YP_001792179.1 CDS Lcho_3154 NC_010524.1 3481989 3482585 D PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_2445 phosphinothricin N-acetyltransferase; N-acetyltransferase GCN5 3481989..3482585 Leptothrix cholodnii SP-6 6162731 YP_001792180.1 CDS Lcho_3155 NC_010524.1 3482695 3483549 D PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A1094 ATPase, AAA family protein; ATPase 3482695..3483549 Leptothrix cholodnii SP-6 6162732 YP_001792181.1 CDS Lcho_3156 NC_010524.1 3483561 3483842 D KEGG: mpt:Mpe_A1093 hypothetical protein; hypothetical protein 3483561..3483842 Leptothrix cholodnii SP-6 6162733 YP_001792182.1 CDS Lcho_3157 NC_010524.1 3483839 3484423 D PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A1092 putative amino-acid acetyltransferase; N-acetyltransferase GCN5 3483839..3484423 Leptothrix cholodnii SP-6 6162734 YP_001792183.1 CDS Lcho_3158 NC_010524.1 3484435 3486441 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0490 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 3484435..3486441 Leptothrix cholodnii SP-6 6162735 YP_001792184.1 CDS Lcho_3159 NC_010524.1 3486419 3487441 R KEGG: pna:Pnap_0127 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase complement(3486419..3487441) Leptothrix cholodnii SP-6 6162736 YP_001792185.1 CDS Lcho_3160 NC_010524.1 3487682 3488863 D KEGG: mpt:Mpe_A1091 hypothetical protein; hypothetical protein 3487682..3488863 Leptothrix cholodnii SP-6 6162737 YP_001792186.1 CDS Lcho_3161 NC_010524.1 3488860 3490800 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: mpt:Mpe_A1090 hypothetical protein; surface antigen (D15) 3488860..3490800 Leptothrix cholodnii SP-6 6161757 YP_001792187.1 CDS Lcho_3162 NC_010524.1 3490803 3495164 D PFAM: protein of unknown function DUF490; KEGG: mpt:Mpe_A1089 hypothetical protein; hypothetical protein 3490803..3495164 Leptothrix cholodnii SP-6 6161758 YP_001792188.1 CDS Lcho_3163 NC_010524.1 3495456 3496745 D PFAM: integrase family protein; KEGG: mpt:Mpe_A1087 prophage CP4-like integrase; integrase family protein 3495456..3496745 Leptothrix cholodnii SP-6 6161760 YP_001792189.1 CDS Lcho_3164 NC_010524.1 3498201 3498656 D hypothetical protein 3498201..3498656 Leptothrix cholodnii SP-6 6161761 YP_001792190.1 CDS Lcho_3165 NC_010524.1 3499024 3499323 D PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_4705 hypothetical protein; transposase IS3/IS911 family protein 3499024..3499323 Leptothrix cholodnii SP-6 6161762 YP_001792191.1 CDS Lcho_3166 NC_010524.1 3499320 3500207 D PFAM: Integrase catalytic region; KEGG: pol:Bpro_4706 integrase, catalytic region; integrase catalytic subunit 3499320..3500207 Leptothrix cholodnii SP-6 6161648 YP_001792192.1 CDS Lcho_3168 NC_010524.1 3500629 3501099 D TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: asu:Asuc_1243 phage protein, HK97 GP10 family; HK97 family phage protein 3500629..3501099 Leptothrix cholodnii SP-6 6161650 YP_001792193.1 CDS Lcho_3169 NC_010524.1 3501147 3501449 D hypothetical protein 3501147..3501449 Leptothrix cholodnii SP-6 6161651 YP_001792194.1 CDS Lcho_3170 NC_010524.1 3502013 3502615 D PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein; resolvase domain-containing protein 3502013..3502615 Leptothrix cholodnii SP-6 6161652 YP_001792195.1 CDS Lcho_3171 NC_010524.1 3502655 3502990 D KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system; RelE-like cytotoxic translational repressor of toxin-antitoxin stability system 3502655..3502990 Leptothrix cholodnii SP-6 6161653 YP_001792196.1 CDS Lcho_3172 NC_010524.1 3502995 3503279 D PFAM: helix-turn-helix domain protein; KEGG: vei:Veis_0468 helix-turn-helix domain protein; XRE family transcriptional regulator 3502995..3503279 Leptothrix cholodnii SP-6 6161654 YP_001792197.1 CDS Lcho_3173 NC_010524.1 3503641 3505731 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: ajs:Ajs_3104 diguanylate cyclase with PAS/PAC sensor; PAS/PAC sensor-containing diguanylate cyclase 3503641..3505731 Leptothrix cholodnii SP-6 6161595 YP_001792198.1 CDS Lcho_3174 NC_010524.1 3505949 3509212 D PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2754 PAS; GAF sensor hybrid histidine kinase 3505949..3509212 Leptothrix cholodnii SP-6 6161596 YP_001792199.1 CDS Lcho_3175 NC_010524.1 3509246 3510175 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0722 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3509246..3510175) Leptothrix cholodnii SP-6 6161597 YP_001792200.1 CDS Lcho_3176 NC_010524.1 3510295 3511371 D KEGG: rfr:Rfer_0845 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 3510295..3511371 Leptothrix cholodnii SP-6 6161598 YP_001792201.1 CDS Lcho_3177 NC_010524.1 3511408 3512694 D PFAM: MOFRL domain protein; KEGG: azo:azo1162 probable hydroxypyruvate reductase; hydroxypyruvate reductase 3511408..3512694 Leptothrix cholodnii SP-6 6161599 YP_001792202.1 CDS Lcho_3178 NC_010524.1 3512796 3513782 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_1017 uncharacterized protein UPF0065; hypothetical protein 3512796..3513782 Leptothrix cholodnii SP-6 6161600 YP_001792203.1 CDS Lcho_3179 NC_010524.1 3513822 3514919 R PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: eba:ebA3490 hypothetical protein; heat shock protein DnaJ domain-containing protein complement(3513822..3514919) Leptothrix cholodnii SP-6 6161601 YP_001792204.1 CDS Lcho_3180 NC_010524.1 3515150 3516718 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mms:mma_2584 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3515150..3516718 Leptothrix cholodnii SP-6 6162963 YP_001792205.1 CDS Lcho_3181 NC_010524.1 3516743 3517471 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll6662 ribitol 2-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3516743..3517471) Leptothrix cholodnii SP-6 6162964 YP_001792206.1 CDS Lcho_3182 NC_010524.1 3517521 3518468 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vei:Veis_3165 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(3517521..3518468) Leptothrix cholodnii SP-6 6162965 YP_001792207.1 CDS Lcho_3184 NC_010524.1 3519450 3520481 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: mpt:Mpe_A1486 hypothetical protein; peptidase C14 caspase catalytic subunit p20 3519450..3520481 Leptothrix cholodnii SP-6 6162967 YP_001792208.1 CDS Lcho_3185 NC_010524.1 3520499 3521908 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rfr:Rfer_1231 hypothetical protein; hypothetical protein 3520499..3521908 Leptothrix cholodnii SP-6 6162968 YP_001792209.1 CDS Lcho_3186 NC_010524.1 3521948 3523882 D KEGG: rfr:Rfer_1231 hypothetical protein; hypothetical protein 3521948..3523882 Leptothrix cholodnii SP-6 6162969 YP_001792210.1 CDS Lcho_3187 NC_010524.1 3523963 3525987 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: eba:ebD78 hypothetical protein; hypothetical protein 3523963..3525987 Leptothrix cholodnii SP-6 6162789 YP_001792211.1 CDS Lcho_3188 NC_010524.1 3526060 3527088 D KEGG: mxa:MXAN_4939 hypothetical protein; hypothetical protein 3526060..3527088 Leptothrix cholodnii SP-6 6162790 YP_001792212.1 CDS Lcho_3189 NC_010524.1 3527109 3527741 D KEGG: mxa:MXAN_4941 hypothetical protein; hypothetical protein 3527109..3527741 Leptothrix cholodnii SP-6 6162791 YP_001792213.1 CDS Lcho_3190 NC_010524.1 3527738 3529723 D KEGG: reh:H16_A1654 hypothetical membrane spanning protein; hypothetical protein 3527738..3529723 Leptothrix cholodnii SP-6 6162792 YP_001792214.1 CDS Lcho_3191 NC_010524.1 3529754 3531355 D PFAM: glucose-methanol-choline oxidoreductase; KEGG: reh:H16_A1655 choline dehydrogenase; cholesterol oxidase 3529754..3531355 Leptothrix cholodnii SP-6 6162793 YP_001792215.1 CDS Lcho_3192 NC_010524.1 3531359 3534160 D KEGG: rfr:Rfer_1230 hypothetical protein; hypothetical protein 3531359..3534160 Leptothrix cholodnii SP-6 6162794 YP_001792216.1 CDS Lcho_3193 NC_010524.1 3534225 3535031 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A3527 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(3534225..3535031) Leptothrix cholodnii SP-6 6162795 YP_001792217.1 CDS Lcho_3194 NC_010524.1 3535193 3536122 D PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A3619 putative hydrolase; alpha/beta hydrolase fold protein 3535193..3536122 Leptothrix cholodnii SP-6 6162446 YP_001792218.1 CDS Lcho_3195 NC_010524.1 3536171 3537973 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: xom:XOO_3074 phosphodiesterase; diguanylate cyclase/phosphodiesterase 3536171..3537973 Leptothrix cholodnii SP-6 6162447 YP_001792219.1 CDS Lcho_3196 NC_010524.1 3538004 3538675 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: mac:MA2988 phosphoribosylanthranilate isomerase; N-(5 -phosphoribosyl)anthranilate isomerase 3538004..3538675 Leptothrix cholodnii SP-6 6162448 YP_001792220.1 CDS Lcho_3197 NC_010524.1 3538677 3539654 R positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC complement(3538677..3539654) Leptothrix cholodnii SP-6 6162449 YP_001792221.1 CDS Lcho_3198 NC_010524.1 3539683 3540927 R PFAM: inner-membrane translocator; KEGG: aav:Aave_2252 inner-membrane translocator; monosaccharide-transporting ATPase complement(3539683..3540927) Leptothrix cholodnii SP-6 6162450 YP_001792222.1 CDS Lcho_3199 NC_010524.1 3540929 3542452 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2253 ABC transporter-related protein; ABC transporter-like protein complement(3540929..3542452) Leptothrix cholodnii SP-6 6162451 YP_001792223.1 CDS Lcho_3200 NC_010524.1 3542537 3543601 R KEGG: aav:Aave_2254 sugar ABC transporter, periplasmic sugar-binding protein; sugar ABC transporter periplasmic sugar-binding protein complement(3542537..3543601) Leptothrix cholodnii SP-6 6162452 YP_001792224.1 CDS Lcho_3201 NC_010524.1 3544251 3545945 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 3544251..3545945 Leptothrix cholodnii SP-6 6162326 YP_001792225.1 CDS Lcho_3202 NC_010524.1 3545942 3546676 D PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 hypothetical protein; L-ribulose-5-phosphate 4-epimerase 3545942..3546676 Leptothrix cholodnii SP-6 6162327 YP_001792226.1 CDS Lcho_3203 NC_010524.1 3546713 3548206 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 3546713..3548206 Leptothrix cholodnii SP-6 6162328 YP_001792227.1 CDS Lcho_3204 NC_010524.1 3548527 3549480 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: gur:Gura_0276 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(3548527..3549480) Leptothrix cholodnii SP-6 6162329 YP_001792228.1 CDS Lcho_3205 NC_010524.1 3549637 3550440 D PFAM: protein of unknown function DUF1037; KEGG: smd:Smed_3808 protein of unknown function DUF1037; hypothetical protein 3549637..3550440 Leptothrix cholodnii SP-6 6162330 YP_001792229.1 CDS Lcho_3206 NC_010524.1 3550440 3551549 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH2165 hypothetical protein; oxidoreductase domain-containing protein 3550440..3551549 Leptothrix cholodnii SP-6 6162331 YP_001792230.1 CDS Lcho_3207 NC_010524.1 3551612 3552817 D PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0434 major facilitator superfamily MFS_1; major facilitator transporter 3551612..3552817 Leptothrix cholodnii SP-6 6162332 YP_001792231.1 CDS Lcho_3208 NC_010524.1 3552861 3553646 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3475 ABC transporter related; ABC transporter-like protein complement(3552861..3553646) Leptothrix cholodnii SP-6 6161609 YP_001792232.1 CDS Lcho_3209 NC_010524.1 3553636 3554286 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3474 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(3553636..3554286) Leptothrix cholodnii SP-6 6161610 YP_001792233.1 CDS Lcho_3210 NC_010524.1 3554377 3555054 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3473 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(3554377..3555054) Leptothrix cholodnii SP-6 6161611 YP_001792234.1 CDS Lcho_3211 NC_010524.1 3555088 3555879 R PFAM: extracellular solute-binding protein family 3; KEGG: pol:Bpro_3472 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(3555088..3555879) Leptothrix cholodnii SP-6 6161612 YP_001792235.1 CDS Lcho_3212 NC_010524.1 3556092 3557474 D KEGG: rfr:Rfer_2239 coenzyme F390 synthetase-like; coenzyme F390 synthetase-like protein 3556092..3557474 Leptothrix cholodnii SP-6 6161613 YP_001792236.1 CDS Lcho_3213 NC_010524.1 3557476 3559293 R PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: eba:ebA5073 putative poly-beta-hydroxyalkanoate synthase; poly-beta-hydroxybutyrate polymerase domain-containing protein complement(3557476..3559293) Leptothrix cholodnii SP-6 6161614 YP_001792237.1 CDS Lcho_3214 NC_010524.1 3559490 3561496 D PFAM: 5'-Nucleotidase domain protein; KEGG: sde:Sde_0580 alkaline phosphatase; 5'-nucleotidase domain-containing protein 3559490..3561496 Leptothrix cholodnii SP-6 6161615 YP_001792238.1 CDS Lcho_3215 NC_010524.1 3561606 3563336 R KEGG: maq:Maqu_3484 hypothetical protein; hypothetical protein complement(3561606..3563336) Leptothrix cholodnii SP-6 6161457 YP_001792239.1 CDS Lcho_3216 NC_010524.1 3563425 3565164 R PFAM: chemotaxis sensory transducer; KEGG: rfr:Rfer_3609 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3563425..3565164) Leptothrix cholodnii SP-6 6161458 YP_001792240.1 CDS Lcho_3217 NC_010524.1 3565327 3567792 R PFAM: glycoside hydrolase family 31; KEGG: rso:RSc1081 probable glucosidase protein; Alpha-glucosidase complement(3565327..3567792) Leptothrix cholodnii SP-6 6161459 YP_001792241.1 CDS Lcho_3218 NC_010524.1 3567793 3569097 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mmw:Mmwyl1_2782 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(3567793..3569097) Leptothrix cholodnii SP-6 6161460 YP_001792242.1 CDS Lcho_3219 NC_010524.1 3569094 3569624 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sit:TM1040_3869 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(3569094..3569624) Leptothrix cholodnii SP-6 6161461 YP_001792243.1 CDS Lcho_3220 NC_010524.1 3569643 3570617 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VVA1590 TRAP-type C4-dicarboxylate transport system, periplasmic component; TRAP dicarboxylate transporter subunit Dctp complement(3569643..3570617) Leptothrix cholodnii SP-6 6161462 YP_001792244.1 CDS glpD NC_010524.1 3570780 3572375 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(3570780..3572375) Leptothrix cholodnii SP-6 6161463 YP_001792245.1 CDS Lcho_3222 NC_010524.1 3572502 3573275 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: reh:H16_A2504 transcriptional regulator, DeoR-family; DeoR family transcriptional regulator 3572502..3573275 Leptothrix cholodnii SP-6 6161980 YP_001792246.1 CDS Lcho_3223 NC_010524.1 3573317 3574810 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rfr:Rfer_3678 glycerol kinase; glycerol kinase 3573317..3574810 Leptothrix cholodnii SP-6 6161981 YP_001792247.1 CDS Lcho_3224 NC_010524.1 3575000 3576253 D PFAM: sodium/hydrogen exchanger; KEGG: bxe:Bxe_A0001 hypothetical protein; sodium/hydrogen exchanger 3575000..3576253 Leptothrix cholodnii SP-6 6161982 YP_001792248.1 CDS Lcho_3225 NC_010524.1 3576250 3577374 D ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 3576250..3577374 Leptothrix cholodnii SP-6 6161983 YP_001792249.1 CDS Lcho_3226 NC_010524.1 3577344 3578201 D PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: azo:azo2275 putative glutamine amidotransferase; peptidase C26 3577344..3578201 Leptothrix cholodnii SP-6 6161984 YP_001792250.1 CDS Lcho_3227 NC_010524.1 3578342 3579430 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bpm:BURPS1710b_A1187 LacI family regulatory protein; LacI family transcriptional regulator 3578342..3579430 Leptothrix cholodnii SP-6 6161985 YP_001792251.1 CDS Lcho_3228 NC_010524.1 3579427 3580962 R PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: nar:Saro_1882 tryptophan halogenase; tryptophan halogenase complement(3579427..3580962) Leptothrix cholodnii SP-6 6161986 YP_001792252.1 CDS Lcho_3229 NC_010524.1 3581071 3583698 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1136 TonB-dependent receptor; TonB-dependent receptor complement(3581071..3583698) Leptothrix cholodnii SP-6 6162744 YP_001792253.1 CDS Lcho_3230 NC_010524.1 3583882 3585087 R PFAM: sodium/hydrogen exchanger; KEGG: dar:Daro_4191 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(3583882..3585087) Leptothrix cholodnii SP-6 6162745 YP_001792254.1 CDS Lcho_3231 NC_010524.1 3585109 3586329 R KEGG: bxe:Bxe_A2996 hypothetical protein; hypothetical protein complement(3585109..3586329) Leptothrix cholodnii SP-6 6162746 YP_001792255.1 CDS Lcho_3232 NC_010524.1 3586341 3586781 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bur:Bcep18194_A5005 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(3586341..3586781) Leptothrix cholodnii SP-6 6162747 YP_001792256.1 CDS Lcho_3233 NC_010524.1 3586792 3587220 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mpt:Mpe_A1756 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR complement(3586792..3587220) Leptothrix cholodnii SP-6 6162748 YP_001792257.1 CDS Lcho_3234 NC_010524.1 3587231 3588067 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein; MotA/TolQ/ExbB proton channel complement(3587231..3588067) Leptothrix cholodnii SP-6 6162749 YP_001792258.1 CDS Lcho_3235 NC_010524.1 3588138 3588815 R TIGRFAM: TonB family protein; KEGG: azo:azo2329 periplasmic biopolymer transport protein linking inner and outer membranes; TonB family protein complement(3588138..3588815) Leptothrix cholodnii SP-6 6162750 YP_001792259.1 CDS Lcho_3236 NC_010524.1 3588840 3589088 R KEGG: mpt:Mpe_B0598 hypothetical protein; hypothetical protein complement(3588840..3589088) Leptothrix cholodnii SP-6 6161669 YP_001792260.1 CDS Lcho_3237 NC_010524.1 3589439 3590470 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pna:Pnap_0226 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 3589439..3590470 Leptothrix cholodnii SP-6 6161670 YP_001792261.1 CDS Lcho_3238 NC_010524.1 3590507 3591583 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bpl:BURPS1106A_A2822 transcriptional regulator, LacI family; periplasmic-binding protein/LacI transcriptional regulator complement(3590507..3591583) Leptothrix cholodnii SP-6 6161671 YP_001792262.1 CDS Lcho_3239 NC_010524.1 3591795 3593219 R PFAM: glycoside hydrolase family 4; KEGG: rca:Rcas_1884 glycoside hydrolase family 4; glycoside hydrolase family protein complement(3591795..3593219) Leptothrix cholodnii SP-6 6161672 YP_001792263.1 CDS Lcho_3240 NC_010524.1 3593357 3594661 R PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_3361 putative extracellular sugar-binding protein; extracellular solute-binding protein complement(3593357..3594661) Leptothrix cholodnii SP-6 6161673 YP_001792264.1 CDS Lcho_3241 NC_010524.1 3594716 3595642 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0272 putative binding-protein-dependent transport protein; binding-protein-dependent transport system inner membrane protein complement(3594716..3595642) Leptothrix cholodnii SP-6 6161674 YP_001792265.1 CDS Lcho_3242 NC_010524.1 3595726 3596679 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0271 putative binding-protein-dependent transport protein; binding-protein-dependent transport system inner membrane protein complement(3595726..3596679) Leptothrix cholodnii SP-6 6161675 YP_001792266.1 CDS Lcho_3243 NC_010524.1 3596965 3597999 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2027 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 3596965..3597999 Leptothrix cholodnii SP-6 6160864 YP_001792267.1 CDS Lcho_3244 NC_010524.1 3598175 3599347 D PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_A1185 maltose/maltodextrin import ATP-binding protein MalK; ABC transporter-like protein 3598175..3599347 Leptothrix cholodnii SP-6 6160865 YP_001792268.1 CDS Lcho_3245 NC_010524.1 3599372 3601393 D PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bam:Bamb_4931 beta-galactosidase; beta-galactosidase 3599372..3601393 Leptothrix cholodnii SP-6 6160866 YP_001792269.1 CDS Lcho_3246 NC_010524.1 3601416 3603602 D PFAM: glycoside hydrolase clan GH-D; KEGG: bpl:BURPS1106A_A2815 alpha-galactosidase; glycoside hydrolase clan GH-D 3601416..3603602 Leptothrix cholodnii SP-6 6160867 YP_001792270.1 CDS Lcho_3247 NC_010524.1 3603605 3604621 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: asa:ASA_2390 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3603605..3604621 Leptothrix cholodnii SP-6 6160868 YP_001792271.1 CDS Lcho_3248 NC_010524.1 3604618 3605670 D KEGG: asa:ASA_2391 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase 3604618..3605670 Leptothrix cholodnii SP-6 6160869 YP_001792272.1 CDS Lcho_3249 NC_010524.1 3605684 3606847 D TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: aha:AHA_4105 galactokinase; galactokinase 3605684..3606847 Leptothrix cholodnii SP-6 6160870 YP_001792273.1 CDS Lcho_3250 NC_010524.1 3606873 3607886 D PFAM: aldo/keto reductase; KEGG: esa:ESA_00850 hypothetical protein; aldo/keto reductase 3606873..3607886 Leptothrix cholodnii SP-6 6163576 YP_001792274.1 CDS Lcho_3251 NC_010524.1 3607902 3608612 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1671 ABC transporter related; ABC transporter-like protein complement(3607902..3608612) Leptothrix cholodnii SP-6 6163577 YP_001792275.1 CDS Lcho_3252 NC_010524.1 3608615 3609835 R PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1672 protein of unknown function DUF214; hypothetical protein complement(3608615..3609835) Leptothrix cholodnii SP-6 6163578 YP_001792276.1 CDS Lcho_3253 NC_010524.1 3609832 3611025 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_2837 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(3609832..3611025) Leptothrix cholodnii SP-6 6163579 YP_001792277.1 CDS Lcho_3254 NC_010524.1 3611022 3611621 R PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3622 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3611022..3611621) Leptothrix cholodnii SP-6 6163580 YP_001792278.1 CDS Lcho_3255 NC_010524.1 3611790 3612908 D TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1230 alcohol dehydrogenase, zinc-binding domain protein; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3611790..3612908 Leptothrix cholodnii SP-6 6163581 YP_001792279.1 CDS Lcho_3256 NC_010524.1 3612989 3613855 D KEGG: ajs:Ajs_2801 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 3612989..3613855 Leptothrix cholodnii SP-6 6163582 YP_001792280.1 CDS Lcho_3257 NC_010524.1 3613902 3615242 D PFAM: Chloride channel core; KEGG: mpt:Mpe_A0110 voltage gated chloride channel family protein; chloride channel core 3613902..3615242 Leptothrix cholodnii SP-6 6163696 YP_001792281.1 CDS glcF NC_010524.1 3615274 3616548 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mpt:Mpe_A3640 glycolate oxidase iron-sulfur subunit; glycolate oxidase iron-sulfur subunit complement(3615274..3616548) Leptothrix cholodnii SP-6 6163697 YP_001792282.1 CDS Lcho_3259 NC_010524.1 3616599 3617729 R PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3639 FAD linked oxidase; FAD linked oxidase domain-containing protein complement(3616599..3617729) Leptothrix cholodnii SP-6 6163698 YP_001792283.1 CDS Lcho_3260 NC_010524.1 3617755 3619293 R PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0425 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(3617755..3619293) Leptothrix cholodnii SP-6 6163699 YP_001792284.1 CDS Lcho_3261 NC_010524.1 3619371 3620630 R PFAM: domain of unknown function DUF1745; KEGG: mpt:Mpe_A3636 hypothetical protein; hypothetical protein complement(3619371..3620630) Leptothrix cholodnii SP-6 6163700 YP_001792285.1 CDS Lcho_3262 NC_010524.1 3620680 3621555 R KEGG: mpt:Mpe_A3635 hypothetical protein; hypothetical protein complement(3620680..3621555) Leptothrix cholodnii SP-6 6163701 YP_001792286.1 CDS Lcho_3263 NC_010524.1 3621649 3622638 R PFAM: GumN family protein; KEGG: aav:Aave_0743 GumN family protein; GumN family protein complement(3621649..3622638) Leptothrix cholodnii SP-6 6163702 YP_001792287.1 CDS Lcho_3264 NC_010524.1 3622631 3623617 R KEGG: mpt:Mpe_A3633 hypothetical protein; hypothetical protein complement(3622631..3623617) Leptothrix cholodnii SP-6 6163607 YP_001792288.1 CDS Lcho_3265 NC_010524.1 3623669 3624802 D KEGG: pna:Pnap_0301 hypothetical protein; hypothetical protein 3623669..3624802 Leptothrix cholodnii SP-6 6163608 YP_001792289.1 CDS Lcho_3266 NC_010524.1 3624969 3625265 D KEGG: mpt:Mpe_A3630 hypothetical protein; hypothetical protein 3624969..3625265 Leptothrix cholodnii SP-6 6163609 YP_001792290.1 CDS Lcho_3267 NC_010524.1 3625419 3627806 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A0165 putative ATPase protein; ATPase central domain-containing protein 3625419..3627806 Leptothrix cholodnii SP-6 6163610 YP_001792291.1 CDS Lcho_3268 NC_010524.1 3627851 3628924 D PFAM: homocysteine S-methyltransferase; KEGG: mpt:Mpe_A0166 5-methyltetrahydrofolate--homocysteine S-methyltransferase; homocysteine S-methyltransferase 3627851..3628924 Leptothrix cholodnii SP-6 6163611 YP_001792292.1 CDS Lcho_3269 NC_010524.1 3628941 3629408 R KEGG: mpt:Mpe_A0167 outer membrane protein; outer membrane protein complement(3628941..3629408) Leptothrix cholodnii SP-6 6163612 YP_001792293.1 CDS Lcho_3270 NC_010524.1 3629748 3632522 D KEGG: mpt:Mpe_A0168 5-methyltetrahydrofolate--homocysteine S-methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; methionine synthase 3629748..3632522 Leptothrix cholodnii SP-6 6163613 YP_001792294.1 CDS Lcho_3271 NC_010524.1 3632544 3635489 R PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: bps:BPSS0415 lipoprotein; hypothetical protein complement(3632544..3635489) Leptothrix cholodnii SP-6 6162906 YP_001792295.1 CDS Lcho_3272 NC_010524.1 3635531 3636229 R KEGG: bpd:BURPS668_A0656 putative lipoprotein; putative lipoprotein complement(3635531..3636229) Leptothrix cholodnii SP-6 6162907 YP_001792296.1 CDS Lcho_3273 NC_010524.1 3636292 3636549 R KEGG: sfv:SFV_0996 hypothetical protein; hypothetical protein complement(3636292..3636549) Leptothrix cholodnii SP-6 6162908 YP_001792297.1 CDS Lcho_3274 NC_010524.1 3636737 3637855 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3636737..3637855) Leptothrix cholodnii SP-6 6162909 YP_001792298.1 CDS Lcho_3275 NC_010524.1 3637909 3639018 R TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: mpt:Mpe_A0513 hypothetical protein; GTP-binding protein Obg/CgtA complement(3637909..3639018) Leptothrix cholodnii SP-6 6162910 YP_001792299.1 CDS rpmA NC_010524.1 3639108 3639365 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3639108..3639365) Leptothrix cholodnii SP-6 6162911 YP_001792300.1 CDS rplU NC_010524.1 3639396 3639707 R PFAM: ribosomal protein L21; KEGG: mpt:Mpe_A0511 putative 50S ribosomal protein L21; 50S ribosomal protein L21 complement(3639396..3639707) Leptothrix cholodnii SP-6 6162912 YP_001792301.1 CDS Lcho_3278 NC_010524.1 3640036 3640977 D PFAM: Polyprenyl synthetase; KEGG: mpt:Mpe_A0510 dimethylallyltransferase; polyprenyl synthetase 3640036..3640977 Leptothrix cholodnii SP-6 6162581 YP_001792302.1 CDS Lcho_3279 NC_010524.1 3641192 3641470 D PFAM: acylphosphatase; KEGG: dar:Daro_1185 acylphosphatase; acylphosphatase 3641192..3641470 Leptothrix cholodnii SP-6 6162583 YP_001792303.1 CDS Lcho_3280 NC_010524.1 3641455 3641715 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3641455..3641715 Leptothrix cholodnii SP-6 6162584 YP_001792304.1 CDS Lcho_3281 NC_010524.1 3641870 3642034 D hypothetical protein 3641870..3642034 Leptothrix cholodnii SP-6 6162585 YP_001792305.1 CDS Lcho_3282 NC_010524.1 3642095 3643123 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: bte:BTH_I2641 myo-inositol dehydrogenase; oxidoreductase domain-containing protein complement(3642095..3643123) Leptothrix cholodnii SP-6 6162586 YP_001792306.1 CDS Lcho_3283 NC_010524.1 3643123 3644118 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bxe:Bxe_A1331 myo-inositol 2-dehydrogenase; inositol 2-dehydrogenase complement(3643123..3644118) Leptothrix cholodnii SP-6 6162422 YP_001792307.1 CDS Lcho_3284 NC_010524.1 3644426 3645256 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rso:RSc1245 putative protein implicated in myo-inositol catabolique pathway; xylose isomerase domain-containing protein 3644426..3645256 Leptothrix cholodnii SP-6 6162423 YP_001792308.1 CDS Lcho_3285 NC_010524.1 3645281 3646414 D PFAM: regulatory protein LacI; KEGG: bmu:Bmul_0614 transcriptional regulator, LacI family; LacI family transcriptional regulator 3645281..3646414 Leptothrix cholodnii SP-6 6162424 YP_001792309.1 CDS Lcho_3286 NC_010524.1 3646440 3650447 R KEGG: sco:SCO3372 large ATP-binding protein; NACHT family-like NTPase complement(3646440..3650447) Leptothrix cholodnii SP-6 6162425 YP_001792310.1 CDS Lcho_3287 NC_010524.1 3650494 3651372 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bam:Bamb_1311 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(3650494..3651372) Leptothrix cholodnii SP-6 6162426 YP_001792311.1 CDS Lcho_3288 NC_010524.1 3651584 3652861 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bur:Bcep18194_A6008 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3651584..3652861 Leptothrix cholodnii SP-6 6162427 YP_001792312.1 CDS Lcho_3289 NC_010524.1 3652910 3653707 D PFAM: Ketopantoate hydroxymethyltransferase; KEGG: smd:Smed_5004 ketopantoate hydroxymethyltransferase; ketopantoate hydroxymethyltransferase 3652910..3653707 Leptothrix cholodnii SP-6 6162428 YP_001792313.1 CDS purU NC_010524.1 3653752 3654600 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3653752..3654600 Leptothrix cholodnii SP-6 6162287 YP_001792314.1 CDS Lcho_3291 NC_010524.1 3654597 3655598 D KEGG: bur:Bcep18194_A6012 hypothetical protein; hypothetical protein 3654597..3655598 Leptothrix cholodnii SP-6 6162288 YP_001792315.1 CDS Lcho_3292 NC_010524.1 3655573 3656319 R PFAM: Integral membrane protein TerC; KEGG: ilo:IL1429 hypothetical protein; integral membrane protein TerC complement(3655573..3656319) Leptothrix cholodnii SP-6 6162289 YP_001792316.1 CDS Lcho_3293 NC_010524.1 3656422 3659091 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1665 ATPase, E1-E2 type; HAD superfamily P-type ATPase complement(3656422..3659091) Leptothrix cholodnii SP-6 6162290 YP_001792317.1 CDS Lcho_3294 NC_010524.1 3659207 3660163 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: scl:sce3322 put. D-ribose-binding periplasmic protein; periplasmic-binding protein/LacI transcriptional regulator 3659207..3660163 Leptothrix cholodnii SP-6 6162291 YP_001792318.1 CDS Lcho_3295 NC_010524.1 3660148 3662580 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: rfr:Rfer_1021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3660148..3662580 Leptothrix cholodnii SP-6 6162292 YP_001792319.1 CDS Lcho_3296 NC_010524.1 3662602 3663378 D PFAM: pseudouridine synthase; KEGG: ajs:Ajs_2505 pseudouridine synthase; pseudouridine synthase 3662602..3663378 Leptothrix cholodnii SP-6 6162293 YP_001792320.1 CDS Lcho_3297 NC_010524.1 3663359 3664801 R KEGG: cau:Caur_2727 glycosyl hydrolase family 32 domain protein; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; Beta-fructofuranosidase complement(3663359..3664801) Leptothrix cholodnii SP-6 6162208 YP_001792321.1 CDS Lcho_3298 NC_010524.1 3664798 3665964 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mmw:Mmwyl1_0233 regulatory protein LacI; LacI family transcriptional regulator complement(3664798..3665964) Leptothrix cholodnii SP-6 6162209 YP_001792322.1 CDS Lcho_3299 NC_010524.1 3666209 3667474 D PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein; extracellular solute-binding protein 3666209..3667474 Leptothrix cholodnii SP-6 6162210 YP_001792323.1 CDS Lcho_3300 NC_010524.1 3667503 3668627 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_377 ABC transporter sugar permease; binding-protein-dependent transport system inner membrane protein 3667503..3668627 Leptothrix cholodnii SP-6 6162211 YP_001792324.1 CDS Lcho_3301 NC_010524.1 3668659 3669534 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_0230 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3668659..3669534 Leptothrix cholodnii SP-6 6162212 YP_001792325.1 CDS Lcho_3302 NC_010524.1 3669607 3670611 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rle:pRL100256 putative ATP-binding component of ABC transporter; ABC transporter-like protein 3669607..3670611 Leptothrix cholodnii SP-6 6162213 YP_001792326.1 CDS Lcho_3303 NC_010524.1 3670622 3670933 R TIGRFAM: Rieske [2Fe-2S] domain protein, MocE subfamily; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bch:Bcen2424_2681 Rieske (2Fe-2S) domain protein, MocE subfamily; Rieske (2Fe-2S) domain-containing protein complement(3670622..3670933) Leptothrix cholodnii SP-6 6162214 YP_001792327.1 CDS Lcho_3304 NC_010524.1 3670963 3672039 R PFAM: fatty acid desaturase; KEGG: bmu:Bmul_0615 fatty acid desaturase; fatty acid desaturase complement(3670963..3672039) Leptothrix cholodnii SP-6 6161533 YP_001792328.1 CDS Lcho_3305 NC_010524.1 3672233 3673285 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_01170 ABC-type sugar transport system, periplasmic component; LacI family transcriptional regulator 3672233..3673285 Leptothrix cholodnii SP-6 6161534 YP_001792329.1 CDS Lcho_3306 NC_010524.1 3673361 3673783 D hypothetical protein 3673361..3673783 Leptothrix cholodnii SP-6 6161535 YP_001792330.1 CDS Lcho_3307 NC_010524.1 3673934 3674380 D KEGG: pna:Pnap_4904 hypothetical protein; dual specificity protein phosphatase 3673934..3674380 Leptothrix cholodnii SP-6 6161536 YP_001792331.1 CDS Lcho_3308 NC_010524.1 3674579 3675460 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmu:Bmul_5797 transcriptional regulator, LysR family; LysR family transcriptional regulator 3674579..3675460 Leptothrix cholodnii SP-6 6161537 YP_001792332.1 CDS Lcho_3309 NC_010524.1 3675474 3675836 R KEGG: mpt:Mpe_A1928 hypothetical protein; hypothetical protein complement(3675474..3675836) Leptothrix cholodnii SP-6 6161538 YP_001792333.1 CDS Lcho_3310 NC_010524.1 3675870 3677060 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rle:pRL120541 putative transmembrane GGDEF/EAL domain protein; diguanylate cyclase complement(3675870..3677060) Leptothrix cholodnii SP-6 6161539 YP_001792334.1 CDS Lcho_3311 NC_010524.1 3677172 3678197 R PFAM: inner-membrane translocator; KEGG: bmu:Bmul_1889 monosaccharide-transporting ATPase; monosaccharide-transporting ATPase complement(3677172..3678197) Leptothrix cholodnii SP-6 6160836 YP_001792335.1 CDS Lcho_3312 NC_010524.1 3678314 3679861 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmu:Bmul_1890 ABC transporter related; ABC transporter-like protein complement(3678314..3679861) Leptothrix cholodnii SP-6 6160837 YP_001792336.1 CDS Lcho_3313 NC_010524.1 3679986 3680915 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1241 putative rhizopine-binding precursor signal peptide protein; periplasmic-binding protein/LacI transcriptional regulator complement(3679986..3680915) Leptothrix cholodnii SP-6 6160838 YP_001792337.1 CDS Lcho_3314 NC_010524.1 3681143 3683083 D PFAM: PfkB domain protein; KEGG: bmu:Bmul_1892 PfkB domain protein; ribokinase-like domain-containing protein 3681143..3683083 Leptothrix cholodnii SP-6 6160839 YP_001792338.1 CDS Lcho_3315 NC_010524.1 3683144 3685000 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bur:Bcep18194_A4566 acetolactate synthase; thiamine pyrophosphate protein central region 3683144..3685000 Leptothrix cholodnii SP-6 6160840 YP_001792339.1 CDS Lcho_3316 NC_010524.1 3685020 3685949 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_A4565 xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 3685020..3685949 Leptothrix cholodnii SP-6 6160841 YP_001792340.1 CDS Lcho_3317 NC_010524.1 3685961 3686758 D PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bam:Bamb_1300 myo-inositol catabolism IolB domain protein; myo-inositol catabolism IolB domain-containing protein 3685961..3686758 Leptothrix cholodnii SP-6 6160842 YP_001792341.1 CDS Lcho_3318 NC_010524.1 3687110 3688057 D KEGG: pna:Pnap_0225 hypothetical protein; hypothetical protein 3687110..3688057 Leptothrix cholodnii SP-6 6163389 YP_001792342.1 CDS Lcho_3319 NC_010524.1 3688173 3689258 D PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: esa:ESA_01983 hypothetical protein; oxidoreductase domain-containing protein 3688173..3689258 Leptothrix cholodnii SP-6 6163390 YP_001792343.1 CDS Lcho_3320 NC_010524.1 3689566 3693018 R PFAM: phosphorylase kinase alphabeta; KEGG: amr:AM1_2391 phosphorylase kinase alpha; phosphorylase kinase subunit alpha/beta complement(3689566..3693018) Leptothrix cholodnii SP-6 6163391 YP_001792344.1 CDS Lcho_3321 NC_010524.1 3693125 3695311 R KEGG: pna:Pnap_1104 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein complement(3693125..3695311) Leptothrix cholodnii SP-6 6163392 YP_001792345.1 CDS Lcho_3322 NC_010524.1 3695405 3697423 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_2030 alpha amylase, catalytic region; alpha amylase complement(3695405..3697423) Leptothrix cholodnii SP-6 6163393 YP_001792346.1 CDS Lcho_3323 NC_010524.1 3697462 3699174 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: btl:BALH_3635 oligo-1,6-glucosidase; alpha amylase complement(3697462..3699174) Leptothrix cholodnii SP-6 6163394 YP_001792347.1 CDS Lcho_3324 NC_010524.1 3699248 3700384 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vei:Veis_0947 ABC transporter related; ABC transporter-like protein complement(3699248..3700384) Leptothrix cholodnii SP-6 6163395 YP_001792348.1 CDS Lcho_3325 NC_010524.1 3700439 3702109 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mlo:mll5109 alpha-glucosidase; alpha amylase complement(3700439..3702109) Leptothrix cholodnii SP-6 6163712 YP_001792349.1 CDS Lcho_3326 NC_010524.1 3702137 3703780 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csa:Csal_0261 alpha amylase; alpha amylase complement(3702137..3703780) Leptothrix cholodnii SP-6 6163713 YP_001792350.1 CDS Lcho_3327 NC_010524.1 3703783 3704619 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_0023 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3703783..3704619) Leptothrix cholodnii SP-6 6163714 YP_001792351.1 CDS Lcho_3328 NC_010524.1 3704619 3705533 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_0259 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3704619..3705533) Leptothrix cholodnii SP-6 6163715 YP_001792352.1 CDS Lcho_3329 NC_010524.1 3705631 3706902 R PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_00201 ABC-type sugar transport system, periplasmic component; extracellular solute-binding protein complement(3705631..3706902) Leptothrix cholodnii SP-6 6163716 YP_001792353.1 CDS Lcho_3330 NC_010524.1 3707146 3708996 D glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; bifunctional glucokinase/RpiR family transcriptional regulator 3707146..3708996 Leptothrix cholodnii SP-6 6163717 YP_001792354.1 CDS Lcho_3331 NC_010524.1 3709076 3710215 D PFAM: Aldose 1-epimerase; KEGG: eca:ECA1388 aldose 1-epimerase; aldose 1-epimerase 3709076..3710215 Leptothrix cholodnii SP-6 6163718 YP_001792355.1 CDS Lcho_3332 NC_010524.1 3710222 3711739 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: mpt:Mpe_A3524 putative transmembrane aldehyde dehydrogenase oxidoreductase protein; methylmalonate-semialdehyde dehydrogenase complement(3710222..3711739) Leptothrix cholodnii SP-6 6160766 YP_001792356.1 CDS Lcho_3333 NC_010524.1 3711919 3712863 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_1395 transcriptional regulator, LysR family; LysR family transcriptional regulator 3711919..3712863 Leptothrix cholodnii SP-6 6160767 YP_001792357.1 CDS Lcho_3334 NC_010524.1 3712882 3713658 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dac:Daci_4337 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3712882..3713658) Leptothrix cholodnii SP-6 6160768 YP_001792358.1 CDS Lcho_3335 NC_010524.1 3713767 3715191 D PFAM: peptidase M48 Ste24p; KEGG: dar:Daro_0246 peptidase M48, Ste24p; peptidase M48 Ste24p 3713767..3715191 Leptothrix cholodnii SP-6 6160769 YP_001792359.1 CDS Lcho_3336 NC_010524.1 3715205 3715939 D KEGG: dar:Daro_2990 hypothetical protein; hypothetical protein 3715205..3715939 Leptothrix cholodnii SP-6 6160770 YP_001792360.1 CDS Lcho_3337 NC_010524.1 3715967 3716785 D PFAM: protein of unknown function DUF124; KEGG: mpt:Mpe_A2218 hypothetical protein; hypothetical protein 3715967..3716785 Leptothrix cholodnii SP-6 6160771 YP_001792361.1 CDS Lcho_3338 NC_010524.1 3716893 3717327 R PFAM: UspA domain protein; KEGG: mpt:Mpe_A2637 hypothetical protein; UspA domain-containing protein complement(3716893..3717327) Leptothrix cholodnii SP-6 6160772 YP_001792362.1 CDS Lcho_3339 NC_010524.1 3717442 3717633 R TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase family enzyme; 4-oxalocrotonate tautomerase complement(3717442..3717633) Leptothrix cholodnii SP-6 6161252 YP_001792363.1 CDS Lcho_3340 NC_010524.1 3717677 3718714 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(3717677..3718714) Leptothrix cholodnii SP-6 6161253 YP_001792364.1 CDS Lcho_3341 NC_010524.1 3718729 3719646 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(3718729..3719646) Leptothrix cholodnii SP-6 6161254 YP_001792365.1 CDS Lcho_3342 NC_010524.1 3719663 3720451 R KEGG: mpt:Mpe_A2272 4-oxalocrotonate decarboxylase; TIGRFAM: 4-oxalocrotonate decarboxylase; PFAM: Hydratase/decarboxylase; 4-oxalocrotonate decarboxylase complement(3719663..3720451) Leptothrix cholodnii SP-6 6161255 YP_001792366.1 CDS Lcho_3343 NC_010524.1 3720552 3721334 R KEGG: reu:Reut_B5691 4-oxalocrotonate decarboxylase; TIGRFAM: 2-oxopent-4-enoate hydratase; PFAM: Hydratase/decarboxylase; 2-oxopent-4-enoate hydratase complement(3720552..3721334) Leptothrix cholodnii SP-6 6161256 YP_001792367.1 CDS Lcho_3344 NC_010524.1 3721383 3722252 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: vei:Veis_2786 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3721383..3722252) Leptothrix cholodnii SP-6 6161257 YP_001792368.1 CDS Lcho_3345 NC_010524.1 3722424 3723284 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A2279 LysR family transcriptional regulatory protein; LysR family transcriptional regulator 3722424..3723284 Leptothrix cholodnii SP-6 6161258 YP_001792369.1 CDS Lcho_3346 NC_010524.1 3723544 3724686 D PFAM: Extracellular ligand-binding receptor; KEGG: har:HEAR0738 putative amino acid ABC transporter; extracellular ligand-binding receptor 3723544..3724686 Leptothrix cholodnii SP-6 6160711 YP_001792370.1 CDS Lcho_3347 NC_010524.1 3724801 3725793 R PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN3035 hypothetical protein; integral membrane protein TerC complement(3724801..3725793) Leptothrix cholodnii SP-6 6160712 YP_001792371.1 CDS Lcho_3348 NC_010524.1 3726004 3726885 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A1718 putative LysR-family transcriptional regulator; LysR family transcriptional regulator 3726004..3726885 Leptothrix cholodnii SP-6 6160713 YP_001792372.1 CDS Lcho_3349 NC_010524.1 3726896 3727330 R KEGG: mpt:Mpe_A1719 hypothetical protein; hypothetical protein complement(3726896..3727330) Leptothrix cholodnii SP-6 6160714 YP_001792373.1 CDS Lcho_3350 NC_010524.1 3727651 3727992 D KEGG: mpt:Mpe_A1725 hypothetical protein; hypothetical protein 3727651..3727992 Leptothrix cholodnii SP-6 6160715 YP_001792374.1 CDS Lcho_3351 NC_010524.1 3728061 3729341 R PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: rfr:Rfer_0377 putative membrane anion transport protein; citrate transporter complement(3728061..3729341) Leptothrix cholodnii SP-6 6160716 YP_001792375.1 CDS Lcho_3352 NC_010524.1 3729571 3729984 D TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: vei:Veis_3009 nucleotidyltransferase substrate binding protein, HI0074 family; nucleotidyltransferase substrate-binding protein 3729571..3729984 Leptothrix cholodnii SP-6 6160330 YP_001792376.1 CDS Lcho_3353 NC_010524.1 3729981 3730319 D PFAM: DNA polymerase beta domain protein region; KEGG: xom:XOO_3260 hypothetical protein; DNA polymerase subunit beta 3729981..3730319 Leptothrix cholodnii SP-6 6160331 YP_001792377.1 CDS Lcho_3354 NC_010524.1 3730361 3731815 R TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: reu:Reut_B5689 betaine-aldehyde dehydrogenase; 2-hydroxymuconic semialdehyde dehydrogenase complement(3730361..3731815) Leptothrix cholodnii SP-6 6160332 YP_001792378.1 CDS Lcho_3355 NC_010524.1 3731862 3732317 R PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_0219 protein of unknown function DUF336; hypothetical protein complement(3731862..3732317) Leptothrix cholodnii SP-6 6160333 YP_001792379.1 CDS Lcho_3356 NC_010524.1 3732337 3733281 R TIGRFAM: catechol 2,3 dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vei:Veis_2789 catechol 2,3-dioxygenase; catechol 2,3 dioxygenase complement(3732337..3733281) Leptothrix cholodnii SP-6 6160334 YP_001792380.1 CDS Lcho_3357 NC_010524.1 3733281 3733673 R PFAM: ferredoxin; KEGG: vei:Veis_2790 ferredoxin; ferredoxin complement(3733281..3733673) Leptothrix cholodnii SP-6 6160335 YP_001792381.1 CDS Lcho_3358 NC_010524.1 3733681 3734745 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: vei:Veis_2791 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit complement(3733681..3734745) Leptothrix cholodnii SP-6 6160336 YP_001792382.1 CDS Lcho_3359 NC_010524.1 3734764 3735120 R PFAM: Phenol hydroxylase conserved region; KEGG: vei:Veis_2792 phenol hydroxylase conserved region; phenol hydroxylase subunit complement(3734764..3735120) Leptothrix cholodnii SP-6 6161046 YP_001792383.1 CDS Lcho_3360 NC_010524.1 3735117 3736703 R PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: vei:Veis_2793 methane/phenol/toluene hydroxylase; methane/phenol/toluene hydroxylase complement(3735117..3736703) Leptothrix cholodnii SP-6 6161047 YP_001792384.1 CDS Lcho_3361 NC_010524.1 3736728 3736997 R PFAM: monooxygenase component MmoB/DmpM; KEGG: vei:Veis_2794 monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM complement(3736728..3736997) Leptothrix cholodnii SP-6 6161048 YP_001792385.1 CDS Lcho_3362 NC_010524.1 3737030 3738025 R PFAM: methane/phenol/toluene hydroxylase; KEGG: vei:Veis_2795 methane/phenol/toluene hydroxylase; phenol 2-monooxygenase complement(3737030..3738025) Leptothrix cholodnii SP-6 6161049 YP_001792386.1 CDS Lcho_3363 NC_010524.1 3738073 3738303 R PFAM: Phenol hydroxylase subunit; KEGG: vei:Veis_2796 phenol hydroxylase subunit; phenol hydroxylase subunit complement(3738073..3738303) Leptothrix cholodnii SP-6 6161050 YP_001792387.1 CDS Lcho_3364 NC_010524.1 3738503 3740260 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_0205 sigma54 specific transcriptional regulator, fis family; putative sigma-54 specific transcriptional regulator 3738503..3740260 Leptothrix cholodnii SP-6 6161051 YP_001792388.1 CDS Lcho_3365 NC_010524.1 3740271 3741014 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_0204 transcriptional regulator, GntR family; GntR family transcriptional regulator 3740271..3741014 Leptothrix cholodnii SP-6 6161052 YP_001792389.1 CDS Lcho_3366 NC_010524.1 3741064 3743352 R KEGG: dar:Daro_1441 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS/PAC sensor hybrid histidine kinase complement(3741064..3743352) Leptothrix cholodnii SP-6 6161035 YP_001792390.1 CDS Lcho_3367 NC_010524.1 3743383 3744321 R PFAM: Rhodanese domain protein; KEGG: mpt:Mpe_A2636 3-mercaptopyruvate sulfurtransferase; rhodanese domain-containing protein complement(3743383..3744321) Leptothrix cholodnii SP-6 6161036 YP_001792391.1 CDS Lcho_3368 NC_010524.1 3744318 3745205 R KEGG: mpt:Mpe_A2635 putative transmembrane protein; putative transmembrane protein complement(3744318..3745205) Leptothrix cholodnii SP-6 6161037 YP_001792392.1 CDS Lcho_3369 NC_010524.1 3745343 3746488 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: aav:Aave_1298 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3745343..3746488 Leptothrix cholodnii SP-6 6161038 YP_001792393.1 CDS Lcho_3370 NC_010524.1 3746579 3747745 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: aav:Aave_2012 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(3746579..3747745) Leptothrix cholodnii SP-6 6161039 YP_001792394.1 CDS Lcho_3371 NC_010524.1 3747965 3748210 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: mpt:Mpe_A2633 putative exodeoxyribonuclease small subunit protein; exodeoxyribonuclease VII small subunit 3747965..3748210 Leptothrix cholodnii SP-6 6161040 YP_001792395.1 CDS Lcho_3372 NC_010524.1 3748207 3749103 D PFAM: Polyprenyl synthetase; KEGG: mpt:Mpe_A2632 geranyltranstransferase; polyprenyl synthetase 3748207..3749103 Leptothrix cholodnii SP-6 6161041 YP_001792396.1 CDS Lcho_3373 NC_010524.1 3749139 3751058 D TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: mpt:Mpe_A2631 putative 1-deoxyxylulose-5-phosphate synthase protein; deoxyxylulose-5-phosphate synthase 3749139..3751058 Leptothrix cholodnii SP-6 6161073 YP_001792397.1 CDS Lcho_3374 NC_010524.1 3751072 3752115 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: tbd:Tbd_1431 putative heat shock protein, DnaJ family; heat shock protein DnaJ domain-containing protein complement(3751072..3752115) Leptothrix cholodnii SP-6 6161074 YP_001792398.1 CDS Lcho_3375 NC_010524.1 3752239 3752679 D PFAM: heat shock protein Hsp20; KEGG: eba:ebA2730 heat shock protein, HSP20 family; heat shock protein Hsp20 3752239..3752679 Leptothrix cholodnii SP-6 6161075 YP_001792399.1 CDS Lcho_3376 NC_010524.1 3752721 3753113 D PFAM: heat shock protein Hsp20; KEGG: eba:ebB88 putative heat shock protein; heat shock protein Hsp20 3752721..3753113 Leptothrix cholodnii SP-6 6161076 YP_001792400.1 CDS Lcho_3377 NC_010524.1 3753147 3753467 R PFAM: cytochrome c class I; KEGG: psa:PST_0367 hypothetical protein; cytochrome c class I complement(3753147..3753467) Leptothrix cholodnii SP-6 6161077 YP_001792401.1 CDS Lcho_3378 NC_010524.1 3753492 3754760 R KEGG: mes:Meso_1588 putative glucose/sorbosone dehydrogenase; putative glucose/sorbosone dehydrogenase complement(3753492..3754760) Leptothrix cholodnii SP-6 6161078 YP_001792402.1 CDS Lcho_3379 NC_010524.1 3755018 3756973 D PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bbt:BBta_3626 putative sigma-54-dependent transcriptional regulator, HTH fis-type family; putative phytochrome sensor protein 3755018..3756973 Leptothrix cholodnii SP-6 6161079 YP_001792403.1 CDS Lcho_3380 NC_010524.1 3756975 3758048 R KEGG: mpt:Mpe_A3087 putative zinc protease protein; putative zinc protease protein complement(3756975..3758048) Leptothrix cholodnii SP-6 6163364 YP_001792404.1 CDS Lcho_3381 NC_010524.1 3758045 3760168 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mpt:Mpe_A3090 conserved hypothetical oxidoreductase protein; molybdopterin oxidoreductase complement(3758045..3760168) Leptothrix cholodnii SP-6 6163365 YP_001792405.1 CDS Lcho_3382 NC_010524.1 3760272 3761480 D KEGG: mpt:Mpe_A3092 hippurate hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 3760272..3761480 Leptothrix cholodnii SP-6 6163366 YP_001792406.1 CDS Lcho_3383 NC_010524.1 3761477 3762154 D PFAM: ThiJ/PfpI domain protein; KEGG: aav:Aave_1967 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 3761477..3762154 Leptothrix cholodnii SP-6 6163367 YP_001792407.1 CDS Lcho_3384 NC_010524.1 3762165 3762785 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A3093 hypothetical protein; HAD family hydrolase complement(3762165..3762785) Leptothrix cholodnii SP-6 6163368 YP_001792408.1 CDS pgi NC_010524.1 3762849 3764486 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(3762849..3764486) Leptothrix cholodnii SP-6 6163369 YP_001792409.1 CDS Lcho_3386 NC_010524.1 3764517 3765464 R KEGG: vei:Veis_1779 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B complement(3764517..3765464) Leptothrix cholodnii SP-6 6163370 YP_001792410.1 CDS Lcho_3387 NC_010524.1 3765716 3767173 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 3765716..3767173 Leptothrix cholodnii SP-6 6162075 YP_001792411.1 CDS Lcho_3388 NC_010524.1 3767281 3768135 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: vei:Veis_1778 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 3767281..3768135 Leptothrix cholodnii SP-6 6162076 YP_001792412.1 CDS Lcho_3389 NC_010524.1 3768167 3768430 R KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS complement(3768167..3768430) Leptothrix cholodnii SP-6 6162077 YP_001792413.1 CDS Lcho_3390 NC_010524.1 3768457 3769071 R PFAM: toluene tolerance family protein; KEGG: pol:Bpro_0797 toluene tolerance; toluene tolerance family protein complement(3768457..3769071) Leptothrix cholodnii SP-6 6162078 YP_001792414.1 CDS Lcho_3391 NC_010524.1 3769174 3769983 R PFAM: VacJ family lipoprotein; KEGG: mpt:Mpe_A3098 putative lipoprotein; VacJ family lipoprotein complement(3769174..3769983) Leptothrix cholodnii SP-6 6162079 YP_001792415.1 CDS Lcho_3392 NC_010524.1 3769980 3770462 R PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0795 mammalian cell entry related; hypothetical protein complement(3769980..3770462) Leptothrix cholodnii SP-6 6162080 YP_001792416.1 CDS Lcho_3393 NC_010524.1 3770481 3771260 R PFAM: protein of unknown function DUF140; KEGG: mpt:Mpe_A3100 hypothetical protein; hypothetical protein complement(3770481..3771260) Leptothrix cholodnii SP-6 6162081 YP_001792417.1 CDS Lcho_3394 NC_010524.1 3771257 3772093 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A3101 putative ABC transporter ATP-binding subunit; ABC transporter-like protein complement(3771257..3772093) Leptothrix cholodnii SP-6 6163211 YP_001792418.1 CDS gltD NC_010524.1 3772242 3773717 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(3772242..3773717) Leptothrix cholodnii SP-6 6163212 YP_001792419.1 CDS Lcho_3396 NC_010524.1 3773784 3778550 R PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: mpt:Mpe_A3103 glutamate synthase (ferredoxin); glutamate synthase complement(3773784..3778550) Leptothrix cholodnii SP-6 6163213 YP_001792420.1 CDS Lcho_3397 NC_010524.1 3778713 3779426 R PFAM: protein of unknown function DUF1568; KEGG: aav:Aave_1007 protein of unknown function DUF1568; hypothetical protein complement(3778713..3779426) Leptothrix cholodnii SP-6 6163214 YP_001792421.1 CDS Lcho_3398 NC_010524.1 3779521 3780444 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mpt:Mpe_A0450 cysteine synthase; cysteine synthase A 3779521..3780444 Leptothrix cholodnii SP-6 6163215 YP_001792422.1 CDS Lcho_3399 NC_010524.1 3780455 3781600 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(3780455..3781600) Leptothrix cholodnii SP-6 6163216 YP_001792423.1 CDS Lcho_3400 NC_010524.1 3781713 3782834 R PFAM: 3-dehydroquinate synthase; KEGG: pna:Pnap_0679 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(3781713..3782834) Leptothrix cholodnii SP-6 6163217 YP_001792424.1 CDS aroK NC_010524.1 3782886 3783434 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(3782886..3783434) Leptothrix cholodnii SP-6 6162833 YP_001792425.1 CDS Lcho_3402 NC_010524.1 3783635 3785323 R KEGG: dac:Daci_5576 hypothetical protein; hypothetical protein complement(3783635..3785323) Leptothrix cholodnii SP-6 6162834 YP_001792426.1 CDS Lcho_3403 NC_010524.1 3785374 3787554 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: mpt:Mpe_A3109 fimbrial biogenesis protein; type IV pilus secretin PilQ complement(3785374..3787554) Leptothrix cholodnii SP-6 6162835 YP_001792427.1 CDS Lcho_3404 NC_010524.1 3787551 3788111 R PFAM: Pilus assembly protein PilP; KEGG: mpt:Mpe_A3110 fimbrial assembly protein; pilus assembly protein PilP complement(3787551..3788111) Leptothrix cholodnii SP-6 6162836 YP_001792428.1 CDS Lcho_3405 NC_010524.1 3788111 3788827 R PFAM: Pilus assembly protein PilO; KEGG: mpt:Mpe_A3111 fimbrial assembly protein; pilus assembly protein PilO complement(3788111..3788827) Leptothrix cholodnii SP-6 6162837 YP_001792429.1 CDS Lcho_3406 NC_010524.1 3788838 3789476 R PFAM: Fimbrial assembly family protein; KEGG: mpt:Mpe_A3112 fimbrial assembly protein; fimbrial assembly family protein complement(3788838..3789476) Leptothrix cholodnii SP-6 6162838 YP_001792430.1 CDS Lcho_3407 NC_010524.1 3789473 3790531 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: mpt:Mpe_A3113 fimbrial assembly protein; type IV pilus assembly protein PilM complement(3789473..3790531) Leptothrix cholodnii SP-6 6162839 YP_001792431.1 CDS Lcho_3408 NC_010524.1 3790895 3793195 D KEGG: mpt:Mpe_A3114 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein 3790895..3793195 Leptothrix cholodnii SP-6 6162415 YP_001792432.1 CDS Lcho_3409 NC_010524.1 3793245 3793631 R TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: mpt:Mpe_A3115 CyaY protein; iron donor protein CyaY complement(3793245..3793631) Leptothrix cholodnii SP-6 6162416 YP_001792433.1 CDS Lcho_3410 NC_010524.1 3793901 3795169 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mpt:Mpe_A3116 putative diaminopimelate decarboxylase protein; diaminopimelate decarboxylase 3793901..3795169 Leptothrix cholodnii SP-6 6162417 YP_001792434.1 CDS Lcho_3411 NC_010524.1 3795198 3795926 R KEGG: pol:Bpro_0748 hypothetical protein; hypothetical protein complement(3795198..3795926) Leptothrix cholodnii SP-6 6162418 YP_001792435.1 CDS Lcho_3412 NC_010524.1 3796165 3797418 R KEGG: pol:Bpro_0746 outer membrane protein (porin)-like; outer membrane protein (porin)-like protein complement(3796165..3797418) Leptothrix cholodnii SP-6 6162419 YP_001792436.1 CDS Lcho_3413 NC_010524.1 3797581 3798627 R KEGG: mms:mma_0290 outer membrane porin; outer membrane porin complement(3797581..3798627) Leptothrix cholodnii SP-6 6162420 YP_001792437.1 CDS Lcho_3414 NC_010524.1 3798894 3799544 D KEGG: pol:Bpro_0745 putative ubiquinone biosynthesis protein; putative ubiquinone biosynthesis protein 3798894..3799544 Leptothrix cholodnii SP-6 6162421 YP_001792438.1 CDS Lcho_3415 NC_010524.1 3799563 3799985 R PFAM: OsmC family protein; KEGG: mpt:Mpe_A3124 hypothetical protein; OsmC family protein complement(3799563..3799985) Leptothrix cholodnii SP-6 6162068 YP_001792439.1 CDS Lcho_3416 NC_010524.1 3800461 3801966 D TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mpt:Mpe_A3125 threonine dehydratase biosynthetic; threonine dehydratase, biosynthetic 3800461..3801966 Leptothrix cholodnii SP-6 6162069 YP_001792440.1 CDS Lcho_3417 NC_010524.1 3802003 3803097 D PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: mpt:Mpe_A3126 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3802003..3803097 Leptothrix cholodnii SP-6 6162070 YP_001792441.1 CDS Lcho_3418 NC_010524.1 3803139 3803726 R KEGG: mpt:Mpe_A3127 general secretion pathway protein C; general secretion pathway protein C complement(3803139..3803726) Leptothrix cholodnii SP-6 6162071 YP_001792442.1 CDS Lcho_3419 NC_010524.1 3803828 3804280 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: mpt:Mpe_A3128 general secretion pathway protein G; general secretion pathway protein G 3803828..3804280 Leptothrix cholodnii SP-6 6162072 YP_001792443.1 CDS Lcho_3420 NC_010524.1 3804255 3804785 D KEGG: mpt:Mpe_A3129 general secretion pathway protein H; general secretion pathway protein H 3804255..3804785 Leptothrix cholodnii SP-6 6162073 YP_001792444.1 CDS Lcho_3421 NC_010524.1 3804811 3805152 D TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: mpt:Mpe_A3130 general secretion pathway protein I; general secretion pathway protein I 3804811..3805152 Leptothrix cholodnii SP-6 6162074 YP_001792445.1 CDS Lcho_3422 NC_010524.1 3805171 3805869 D KEGG: mpt:Mpe_A3131 general secretion pathway protein J; general secretion pathway protein J 3805171..3805869 Leptothrix cholodnii SP-6 6161875 YP_001792446.1 CDS Lcho_3423 NC_010524.1 3805896 3806879 D PFAM: General secretion pathway protein K; KEGG: mpt:Mpe_A3132 general secretion pathway protein K; general secretion pathway protein K 3805896..3806879 Leptothrix cholodnii SP-6 6161876 YP_001792447.1 CDS Lcho_3424 NC_010524.1 3806953 3808239 D PFAM: General secretion pathway L; KEGG: mpt:Mpe_A3133 general secretion pathway protein L; general secretion pathway L 3806953..3808239 Leptothrix cholodnii SP-6 6161877 YP_001792448.1 CDS Lcho_3425 NC_010524.1 3808236 3808748 D PFAM: General secretion pathway M protein; KEGG: mpt:Mpe_A3134 general secretion pathway protein M; general secretion pathway M protein 3808236..3808748 Leptothrix cholodnii SP-6 6161878 YP_001792449.1 CDS Lcho_3426 NC_010524.1 3808753 3809712 D KEGG: mpt:Mpe_A3135 general secretion pathway protein N; general secretion pathway protein N 3808753..3809712 Leptothrix cholodnii SP-6 6161879 YP_001792450.1 CDS Lcho_3427 NC_010524.1 3809715 3811976 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: mpt:Mpe_A3136 general secretion pathway protein D; general secretion pathway protein D 3809715..3811976 Leptothrix cholodnii SP-6 6161880 YP_001792451.1 CDS Lcho_3428 NC_010524.1 3811993 3813408 D KEGG: mpt:Mpe_A3137 pili biogenesis ATPase; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 3811993..3813408 Leptothrix cholodnii SP-6 6161881 YP_001792452.1 CDS Lcho_3429 NC_010524.1 3813513 3814730 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: mpt:Mpe_A3138 general secretory pathway protein F; general secretion pathway protein F 3813513..3814730 Leptothrix cholodnii SP-6 6163123 YP_001792453.1 CDS Lcho_3430 NC_010524.1 3814793 3831634 R KEGG: pin:Ping_2394 filamentous haemagglutinin family outer membrane protein; TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Ig family protein; filamentous haemagglutinin domain protein; SMART: Dystroglycan-type cadherin domain protein; filamentous hemagglutinin outer membrane protein complement(3814793..3831634) Leptothrix cholodnii SP-6 6163124 YP_001792454.1 CDS Lcho_3431 NC_010524.1 3831726 3833429 R PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: mms:mma_1617 hemolysin activation/secretion signal peptide protein; polypeptide-transport-associated domain-containing protein complement(3831726..3833429) Leptothrix cholodnii SP-6 6163125 YP_001792455.1 CDS Lcho_3432 NC_010524.1 3833721 3834734 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A3140 putative ATPase; ATPase central domain-containing protein 3833721..3834734 Leptothrix cholodnii SP-6 6163126 YP_001792456.1 CDS Lcho_3433 NC_010524.1 3834789 3835544 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(3834789..3835544) Leptothrix cholodnii SP-6 6163127 YP_001792457.1 CDS Lcho_3434 NC_010524.1 3835738 3837684 D PFAM: AMP-dependent synthetase and ligase; KEGG: pna:Pnap_3607 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3835738..3837684 Leptothrix cholodnii SP-6 6163128 YP_001792458.1 CDS Lcho_3435 NC_010524.1 3837681 3838475 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0469 ABC transporter related; ABC transporter-like protein 3837681..3838475 Leptothrix cholodnii SP-6 6163129 YP_001792459.1 CDS Lcho_3436 NC_010524.1 3838575 3839504 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator; inner-membrane translocator 3838575..3839504 Leptothrix cholodnii SP-6 6160190 YP_001792460.1 CDS Lcho_3437 NC_010524.1 3839523 3840587 D PFAM: inner-membrane translocator; KEGG: aav:Aave_0784 inner-membrane translocator; inner-membrane translocator 3839523..3840587 Leptothrix cholodnii SP-6 6160191 YP_001792461.1 CDS Lcho_3438 NC_010524.1 3840714 3842045 D KEGG: pna:Pnap_3611 hypothetical protein; hypothetical protein 3840714..3842045 Leptothrix cholodnii SP-6 6160192 YP_001792462.1 CDS Lcho_3439 NC_010524.1 3842130 3842942 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0599 ABC transporter related; ABC transporter-like protein 3842130..3842942 Leptothrix cholodnii SP-6 6160193 YP_001792463.1 CDS Lcho_3440 NC_010524.1 3843000 3843299 D KEGG: mpt:Mpe_A3142 hypothetical protein; hypothetical protein 3843000..3843299 Leptothrix cholodnii SP-6 6160194 YP_001792464.1 CDS Lcho_3441 NC_010524.1 3843292 3844554 D KEGG: ajs:Ajs_0464 putative phenylacetate-CoA ligase; putative phenylacetate-CoA ligase 3843292..3844554 Leptothrix cholodnii SP-6 6160195 YP_001792465.1 CDS Lcho_3442 NC_010524.1 3844669 3845643 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A3143 hypothetical protein; hypothetical protein 3844669..3845643 Leptothrix cholodnii SP-6 6160196 YP_001792466.1 CDS Lcho_3443 NC_010524.1 3845900 3846541 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mpt:Mpe_A3148 two component response regulator; two component transcriptional regulator 3845900..3846541 Leptothrix cholodnii SP-6 6160276 YP_001792467.1 CDS Lcho_3444 NC_010524.1 3846534 3847928 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A3149 sensor histidine kinase; histidine kinase 3846534..3847928 Leptothrix cholodnii SP-6 6160277 YP_001792468.1 CDS Lcho_3445 NC_010524.1 3847943 3849184 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3847943..3849184) Leptothrix cholodnii SP-6 6160278 YP_001792469.1 CDS Lcho_3446 NC_010524.1 3849360 3850754 D PFAM: peptidase M23B; KEGG: mpt:Mpe_A3151 hypothetical protein; peptidase M23B 3849360..3850754 Leptothrix cholodnii SP-6 6160279 YP_001792470.1 CDS anmK NC_010524.1 3850796 3851893 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3850796..3851893 Leptothrix cholodnii SP-6 6160280 YP_001792471.1 CDS Lcho_3448 NC_010524.1 3851973 3852338 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: aav:Aave_4049 iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly accessory protein complement(3851973..3852338) Leptothrix cholodnii SP-6 6160281 YP_001792472.1 CDS Lcho_3449 NC_010524.1 3852414 3852836 R PFAM: protein of unknown function DUF583; KEGG: mpt:Mpe_A3154 hypothetical protein; hypothetical protein complement(3852414..3852836) Leptothrix cholodnii SP-6 6160282 YP_001792473.1 CDS Lcho_3450 NC_010524.1 3852920 3853633 R KEGG: mpt:Mpe_A3155 hypothetical protein; hypothetical protein complement(3852920..3853633) Leptothrix cholodnii SP-6 6159867 YP_001792474.1 CDS rpsI NC_010524.1 3853814 3854206 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3853814..3854206) Leptothrix cholodnii SP-6 6159868 YP_001792475.1 CDS rplM NC_010524.1 3854216 3854644 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3854216..3854644) Leptothrix cholodnii SP-6 6159869 YP_001792476.1 CDS Lcho_3453 NC_010524.1 3854895 3856046 R PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein; basic membrane lipoprotein complement(3854895..3856046) Leptothrix cholodnii SP-6 6159870 YP_001792477.1 CDS Lcho_3454 NC_010524.1 3856124 3856948 R KEGG: mpt:Mpe_A0802 hypothetical protein; hypothetical protein complement(3856124..3856948) Leptothrix cholodnii SP-6 6159871 YP_001792478.1 CDS Lcho_3455 NC_010524.1 3857096 3858016 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_1485 inner-membrane translocator; inner-membrane translocator complement(3857096..3858016) Leptothrix cholodnii SP-6 6159872 YP_001792479.1 CDS Lcho_3456 NC_010524.1 3858035 3859120 R PFAM: inner-membrane translocator; KEGG: dac:Daci_2136 inner-membrane translocator; inner-membrane translocator complement(3858035..3859120) Leptothrix cholodnii SP-6 6159873 YP_001792480.1 CDS Lcho_3457 NC_010524.1 3859107 3860666 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0803 putative sugar ATP binding ABC transporter protein; ABC transporter-like protein complement(3859107..3860666) Leptothrix cholodnii SP-6 6159892 YP_001792481.1 CDS Lcho_3458 NC_010524.1 3860725 3862029 R TIGRFAM: guanine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mpt:Mpe_A0801 guanine deaminase; guanine deaminase complement(3860725..3862029) Leptothrix cholodnii SP-6 6159893 YP_001792482.1 CDS Lcho_3459 NC_010524.1 3862026 3863003 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A0800 putative LysR-family transcriptonal regulator; LysR family transcriptional regulator complement(3862026..3863003) Leptothrix cholodnii SP-6 6159894 YP_001792483.1 CDS Lcho_3460 NC_010524.1 3863110 3864702 D TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: dac:Daci_5910 xanthine dehydrogenase, small subunit; xanthine dehydrogenase small subunit 3863110..3864702 Leptothrix cholodnii SP-6 6159895 YP_001792484.1 CDS Lcho_3461 NC_010524.1 3864699 3867062 D KEGG: mpt:Mpe_A0798 xanthine dehydrogenase; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; xanthine dehydrogenase, molybdopterin-binding subunit 3864699..3867062 Leptothrix cholodnii SP-6 6159896 YP_001792485.1 CDS Lcho_3462 NC_010524.1 3867076 3867912 D TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: mpt:Mpe_A0797 xanthine dehydrogenase accessory factor; xanthine dehydrogenase accessory protein XdhC 3867076..3867912 Leptothrix cholodnii SP-6 6159897 YP_001792486.1 CDS Lcho_3463 NC_010524.1 3867949 3871950 R KEGG: psb:Psyr_2940 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MASE1 domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(3867949..3871950) Leptothrix cholodnii SP-6 6159898 YP_001792487.1 CDS Lcho_3464 NC_010524.1 3871991 3874105 R KEGG: tcx:Tcr_1222 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3871991..3874105) Leptothrix cholodnii SP-6 6159781 YP_001792488.1 CDS Lcho_3465 NC_010524.1 3874533 3877607 D KEGG: azo:azo1687 hypothetical protein; hypothetical protein 3874533..3877607 Leptothrix cholodnii SP-6 6159782 YP_001792489.1 CDS Lcho_3468 NC_010524.1 3880425 3882662 D KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3880425..3882662 Leptothrix cholodnii SP-6 6159784 YP_001792490.1 CDS Lcho_3469 NC_010524.1 3882930 3884231 D PFAM: integrase family protein; KEGG: bam:Bamb_0912 phage integrase family protein; integrase family protein 3882930..3884231 Leptothrix cholodnii SP-6 6159786 YP_001792491.1 CDS Lcho_3470 NC_010524.1 3884339 3884662 D hypothetical protein 3884339..3884662 Leptothrix cholodnii SP-6 6160250 YP_001792492.1 CDS Lcho_3471 NC_010524.1 3884763 3885878 D KEGG: eba:ebA798 hypothetical protein; hypothetical protein 3884763..3885878 Leptothrix cholodnii SP-6 6160251 YP_001792493.1 CDS Lcho_3472 NC_010524.1 3886077 3886301 D hypothetical protein 3886077..3886301 Leptothrix cholodnii SP-6 6160252 YP_001792494.1 CDS Lcho_3473 NC_010524.1 3886311 3886694 D hypothetical protein 3886311..3886694 Leptothrix cholodnii SP-6 6160253 YP_001792495.1 CDS Lcho_3474 NC_010524.1 3887132 3887377 D hypothetical protein 3887132..3887377 Leptothrix cholodnii SP-6 6160254 YP_001792496.1 CDS Lcho_3475 NC_010524.1 3887379 3887945 D hypothetical protein 3887379..3887945 Leptothrix cholodnii SP-6 6160255 YP_001792497.1 CDS Lcho_3476 NC_010524.1 3887942 3888928 D KEGG: asa:ASA_P4G122 DNA primase; hypothetical protein 3887942..3888928 Leptothrix cholodnii SP-6 6160256 YP_001792498.1 CDS Lcho_3477 NC_010524.1 3888921 3890816 D PFAM: protein of unknown function DUF927; KEGG: lpc:LPC_2195 inner membrane protein; hypothetical protein 3888921..3890816 Leptothrix cholodnii SP-6 6159787 YP_001792499.1 CDS Lcho_3478 NC_010524.1 3891202 3891324 D hypothetical protein 3891202..3891324 Leptothrix cholodnii SP-6 6159788 YP_001792500.1 CDS Lcho_3479 NC_010524.1 3891389 3892066 D KEGG: rso:RSc2475 hypothetical protein; hypothetical protein 3891389..3892066 Leptothrix cholodnii SP-6 6159789 YP_001792501.1 CDS Lcho_3480 NC_010524.1 3892256 3892387 D hypothetical protein 3892256..3892387 Leptothrix cholodnii SP-6 6159790 YP_001792502.1 CDS Lcho_3483 NC_010524.1 3893191 3894246 R KEGG: pna:Pnap_1401 hypothetical protein; hypothetical protein complement(3893191..3894246) Leptothrix cholodnii SP-6 6159793 YP_001792503.1 CDS Lcho_3484 NC_010524.1 3894380 3895453 R PFAM: porin Gram-negative type; KEGG: slo:Shew_3260 porin, gram-negative type; porin complement(3894380..3895453) Leptothrix cholodnii SP-6 6160090 YP_001792504.1 CDS Lcho_3485 NC_010524.1 3895716 3897437 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: har:HEAR3262 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3895716..3897437) Leptothrix cholodnii SP-6 6160091 YP_001792505.1 CDS Lcho_3486 NC_010524.1 3897635 3898300 R PFAM: CBS domain containing protein; KEGG: rfr:Rfer_1632 CBS domain containing membrane protein; hypothetical protein complement(3897635..3898300) Leptothrix cholodnii SP-6 6160092 YP_001792506.1 CDS hrcA NC_010524.1 3898355 3899380 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(3898355..3899380) Leptothrix cholodnii SP-6 6160093 YP_001792507.1 CDS ppnK NC_010524.1 3899449 3900369 D catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 3899449..3900369 Leptothrix cholodnii SP-6 6160094 YP_001792508.1 CDS Lcho_3489 NC_010524.1 3900384 3902087 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: mpt:Mpe_A3335 putative DNA repair protein; DNA repair protein RecN 3900384..3902087 Leptothrix cholodnii SP-6 6160095 YP_001792509.1 CDS Lcho_3490 NC_010524.1 3902114 3903070 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A3336 hypothetical protein; hypothetical protein 3902114..3903070 Leptothrix cholodnii SP-6 6160096 YP_001792510.1 CDS Lcho_3491 NC_010524.1 3903070 3903699 D PFAM: peptidase S16 lon domain protein; KEGG: mpt:Mpe_A3337 hypothetical protein; peptidase S16 lon domain-containing protein 3903070..3903699 Leptothrix cholodnii SP-6 6160006 YP_001792511.1 CDS Lcho_3492 NC_010524.1 3903716 3904870 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: mpt:Mpe_A3235 putative A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(3903716..3904870) Leptothrix cholodnii SP-6 6160007 YP_001792512.1 CDS Lcho_3493 NC_010524.1 3904867 3906996 R KEGG: mpt:Mpe_A3234 hypothetical protein; hypothetical protein complement(3904867..3906996) Leptothrix cholodnii SP-6 6160008 YP_001792513.1 CDS Lcho_3494 NC_010524.1 3907089 3907919 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3907089..3907919) Leptothrix cholodnii SP-6 6160009 YP_001792514.1 CDS Lcho_3495 NC_010524.1 3907994 3909856 D PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: mpt:Mpe_A3232 hypothetical protein; hypothetical protein 3907994..3909856 Leptothrix cholodnii SP-6 6160010 YP_001792515.1 CDS Lcho_3496 NC_010524.1 3909853 3910449 D KEGG: mpt:Mpe_A3231 hypothetical protein; hypothetical protein 3909853..3910449 Leptothrix cholodnii SP-6 6160011 YP_001792516.1 CDS ipk NC_010524.1 3910512 3911387 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3910512..3911387 Leptothrix cholodnii SP-6 6160012 YP_001792517.1 CDS Lcho_3498 NC_010524.1 3911601 3912563 D KEGG: mpt:Mpe_A3229 ribose-phosphate diphosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 3911601..3912563 Leptothrix cholodnii SP-6 6159982 YP_001792518.1 CDS Lcho_3499 NC_010524.1 3912631 3913257 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 3912631..3913257 Leptothrix cholodnii SP-6 6159983 YP_001792519.1 CDS Lcho_3500 NC_010524.1 3913391 3914032 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3913391..3914032 Leptothrix cholodnii SP-6 6159984 YP_001792520.1 CDS Lcho_3501 NC_010524.1 3914042 3914314 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bxe:Bxe_A4137 ferredoxin; 4Fe-4S ferredoxin complement(3914042..3914314) Leptothrix cholodnii SP-6 6159985 YP_001792521.1 CDS Lcho_3502 NC_010524.1 3914364 3914864 R KEGG: mpt:Mpe_A3224 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(3914364..3914864) Leptothrix cholodnii SP-6 6159986 YP_001792522.1 CDS Lcho_3503 NC_010524.1 3914880 3915542 R TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; methyltransferase small; KEGG: mpt:Mpe_A3223 putative methylase; methyltransferase complement(3914880..3915542) Leptothrix cholodnii SP-6 6160950 YP_001792523.1 CDS Lcho_3504 NC_010524.1 3915698 3916738 D KEGG: mpt:Mpe_A3222 putative cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3915698..3916738 Leptothrix cholodnii SP-6 6160951 YP_001792524.1 CDS Lcho_3505 NC_010524.1 3916740 3919235 R TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; KEGG: eba:ebA4256 general secretion pathway protein-related protein; secretion ATPase complement(3916740..3919235) Leptothrix cholodnii SP-6 6160952 YP_001792525.1 CDS Lcho_3506 NC_010524.1 3919246 3920733 R KEGG: dar:Daro_2400 hypothetical protein; hypothetical protein complement(3919246..3920733) Leptothrix cholodnii SP-6 6160953 YP_001792526.1 CDS Lcho_3507 NC_010524.1 3920801 3921718 R KEGG: dar:Daro_2399 probable exopolysaccharide biosynthesis protein; putative exopolysaccharide biosynthesis protein complement(3920801..3921718) Leptothrix cholodnii SP-6 6160954 YP_001792527.1 CDS Lcho_3508 NC_010524.1 3921737 3923290 R TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: eba:ebA4249 polysaccharide chain length determinant protein; polysaccharide chain length determinant protein complement(3921737..3923290) Leptothrix cholodnii SP-6 6160955 YP_001792528.1 CDS Lcho_3509 NC_010524.1 3923414 3924055 R PFAM: polysaccharide export protein; KEGG: rfr:Rfer_0658 polysaccharide export protein; polysaccharide export protein complement(3923414..3924055) Leptothrix cholodnii SP-6 6160956 YP_001792529.1 CDS Lcho_3510 NC_010524.1 3924279 3925688 R KEGG: azo:azo3193 glycosyltransferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(3924279..3925688) Leptothrix cholodnii SP-6 6161355 YP_001792530.1 CDS Lcho_3511 NC_010524.1 3925701 3925814 R hypothetical protein complement(3925701..3925814) Leptothrix cholodnii SP-6 6161356 YP_001792531.1 CDS Lcho_3512 NC_010524.1 3925964 3926695 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A2735 putative ubiquinone/menaquinone biosynthesis methyltransferase protein; ubiquinone/menaquinone biosynthesis methyltransferase complement(3925964..3926695) Leptothrix cholodnii SP-6 6161357 YP_001792532.1 CDS Lcho_3513 NC_010524.1 3926769 3927176 R PFAM: protein of unknown function DUF971; KEGG: mpt:Mpe_A2736 hypothetical protein; hypothetical protein complement(3926769..3927176) Leptothrix cholodnii SP-6 6161358 YP_001792533.1 CDS Lcho_3514 NC_010524.1 3927254 3927997 R KEGG: aav:Aave_3858 phosphoglycerate mutase 1 family; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(3927254..3927997) Leptothrix cholodnii SP-6 6161359 YP_001792534.1 CDS Lcho_3515 NC_010524.1 3928069 3928491 D PFAM: Rhodanese domain protein; KEGG: mpt:Mpe_A0714 putative transmembrane protein; rhodanese domain-containing protein 3928069..3928491 Leptothrix cholodnii SP-6 6161360 YP_001792535.1 CDS Lcho_3516 NC_010524.1 3928625 3928867 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: mpt:Mpe_A0715 glutaredoxin 3; glutaredoxin 3 3928625..3928867 Leptothrix cholodnii SP-6 6161361 YP_001792536.1 CDS Lcho_3517 NC_010524.1 3929012 3930898 D PFAM: K potassium transporter; KEGG: mpt:Mpe_A0174 potassium uptake protein; K potassium transporter 3929012..3930898 Leptothrix cholodnii SP-6 6162114 YP_001792537.1 CDS Lcho_3518 NC_010524.1 3930909 3931514 R KEGG: mpt:Mpe_A0241 hypothetical protein; hypothetical protein complement(3930909..3931514) Leptothrix cholodnii SP-6 6162115 YP_001792538.1 CDS Lcho_3519 NC_010524.1 3931535 3934327 R PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: mpt:Mpe_A0242 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase complement(3931535..3934327) Leptothrix cholodnii SP-6 6162116 YP_001792539.1 CDS Lcho_3520 NC_010524.1 3934432 3938784 D KEGG: mpt:Mpe_A0243 putative transmembrane protein; putative transmembrane protein 3934432..3938784 Leptothrix cholodnii SP-6 6162117 YP_001792540.1 CDS Lcho_3521 NC_010524.1 3938819 3939637 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mpt:Mpe_A0244 putative nitrilase protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3938819..3939637 Leptothrix cholodnii SP-6 6162118 YP_001792541.1 CDS Lcho_3522 NC_010524.1 3939695 3940951 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: mpt:Mpe_A0245 putative 2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase protein; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(3939695..3940951) Leptothrix cholodnii SP-6 6162119 YP_001792542.1 CDS Lcho_3523 NC_010524.1 3941057 3943174 R KEGG: mpt:Mpe_A0133 putative primosomal protein; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' complement(3941057..3943174) Leptothrix cholodnii SP-6 6162120 YP_001792543.1 CDS Lcho_3524 NC_010524.1 3943536 3944606 R KEGG: pol:Bpro_4264 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase complement(3943536..3944606) Leptothrix cholodnii SP-6 6161803 YP_001792544.1 CDS Lcho_3525 NC_010524.1 3944716 3945093 R TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: mpt:Mpe_A0198 putative ATP synthase epsilon chain protein; ATP synthase F1 subunit epsilon complement(3944716..3945093) Leptothrix cholodnii SP-6 6161804 YP_001792545.1 CDS Lcho_3526 NC_010524.1 3945218 3946642 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(3945218..3946642) Leptothrix cholodnii SP-6 6161805 YP_001792546.1 CDS Lcho_3527 NC_010524.1 3946776 3947657 R KEGG: mpt:Mpe_A0196 sodium-transporting two-sector ATPase; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma complement(3946776..3947657) Leptothrix cholodnii SP-6 6161806 YP_001792547.1 CDS Lcho_3528 NC_010524.1 3947691 3949229 R KEGG: mpt:Mpe_A0195 sodium-transporting two-sector ATPase; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 alpha subunit; ATP synthase F1 subunit alpha complement(3947691..3949229) Leptothrix cholodnii SP-6 6161807 YP_001792548.1 CDS Lcho_3529 NC_010524.1 3949336 3949869 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(3949336..3949869) Leptothrix cholodnii SP-6 6161808 YP_001792549.1 CDS Lcho_3530 NC_010524.1 3949872 3950342 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(3949872..3950342) Leptothrix cholodnii SP-6 6161809 YP_001792550.1 CDS Lcho_3531 NC_010524.1 3950393 3950641 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(3950393..3950641) Leptothrix cholodnii SP-6 6161271 YP_001792551.1 CDS Lcho_3532 NC_010524.1 3950713 3951609 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(3950713..3951609) Leptothrix cholodnii SP-6 6161272 YP_001792552.1 CDS Lcho_3533 NC_010524.1 3951632 3952126 R KEGG: mpt:Mpe_A0190 putative ATP synthase protein I AtpI; putative ATP synthase protein I AtpI complement(3951632..3952126) Leptothrix cholodnii SP-6 6161273 YP_001792553.1 CDS Lcho_3534 NC_010524.1 3952363 3953262 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: mms:mma_0269 gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein complement(3952363..3953262) Leptothrix cholodnii SP-6 6161274 YP_001792554.1 CDS Lcho_3535 NC_010524.1 3953390 3953884 R PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A0188 putative acetyltransferase; N-acetyltransferase GCN5 complement(3953390..3953884) Leptothrix cholodnii SP-6 6161275 YP_001792555.1 CDS Lcho_3536 NC_010524.1 3953909 3954568 R PFAM: cytochrome B561; KEGG: vei:Veis_1276 cytochrome b561; cytochrome B561 complement(3953909..3954568) Leptothrix cholodnii SP-6 6161276 YP_001792556.1 CDS Lcho_3537 NC_010524.1 3954826 3955278 D PFAM: cytochrome c prime; KEGG: pna:Pnap_0216 cytochrome c, class II; cytochrome c prime 3954826..3955278 Leptothrix cholodnii SP-6 6161277 YP_001792557.1 CDS Lcho_3538 NC_010524.1 3955388 3956239 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: mpt:Mpe_A0187 phenazine biosynthesis protein, PhzF family; PhzF family phenazine biosynthesis protein complement(3955388..3956239) Leptothrix cholodnii SP-6 6160910 YP_001792558.1 CDS Lcho_3539 NC_010524.1 3956257 3957480 R PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A0186 valine-pyruvate aminotransferase; GntR family transcriptional regulator complement(3956257..3957480) Leptothrix cholodnii SP-6 6160911 YP_001792559.1 CDS Lcho_3540 NC_010524.1 3957544 3958470 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A0184 hypothetical protein; hypothetical protein complement(3957544..3958470) Leptothrix cholodnii SP-6 6160912 YP_001792560.1 CDS Lcho_3541 NC_010524.1 3958481 3959077 R KEGG: ajs:Ajs_3843 hypothetical protein; hypothetical protein complement(3958481..3959077) Leptothrix cholodnii SP-6 6160913 YP_001792561.1 CDS Lcho_3542 NC_010524.1 3959226 3960167 R TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: mpt:Mpe_A3171 RNA polymerase sigma-32 factor; RNA polymerase sigma-32 subunit RpoH complement(3959226..3960167) Leptothrix cholodnii SP-6 6160914 YP_001792562.1 CDS Lcho_3543 NC_010524.1 3960444 3965255 D KEGG: cvi:CV_3503 probable sensor/response regulator hybrid; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3960444..3965255 Leptothrix cholodnii SP-6 6160915 YP_001792563.1 CDS Lcho_3544 NC_010524.1 3965252 3966220 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: ppd:Ppro_1341 response regulator receiver modulated diguanylate cyclase; response regulator receiver modulated diguanylate cyclase 3965252..3966220 Leptothrix cholodnii SP-6 6160916 YP_001792564.1 CDS Lcho_3545 NC_010524.1 3966245 3968056 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cau:Caur_3534 diguanylate cyclase; diguanylate cyclase/phosphodiesterase complement(3966245..3968056) Leptothrix cholodnii SP-6 6160936 YP_001792565.1 CDS Lcho_3546 NC_010524.1 3968084 3969400 R KEGG: dvl:Dvul_0309 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(3968084..3969400) Leptothrix cholodnii SP-6 6160937 YP_001792566.1 CDS Lcho_3547 NC_010524.1 3969410 3969802 R KEGG: sru:SRU_2224 photoactive yellow protein; photoactive yellow protein complement(3969410..3969802) Leptothrix cholodnii SP-6 6160938 YP_001792567.1 CDS Lcho_3548 NC_010524.1 3969887 3970849 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_0496 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(3969887..3970849) Leptothrix cholodnii SP-6 6160939 YP_001792568.1 CDS Lcho_3549 NC_010524.1 3970962 3971324 R PFAM: translation initiation factor SUI1; KEGG: rfr:Rfer_1757 translation initiation factor SUI1; translation initiation factor SUI1 complement(3970962..3971324) Leptothrix cholodnii SP-6 6160940 YP_001792569.1 CDS Lcho_3550 NC_010524.1 3971450 3972286 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tbd:Tbd_2789 probable thiol:disulfide interchange protein; redoxin domain-containing protein complement(3971450..3972286) Leptothrix cholodnii SP-6 6160941 YP_001792570.1 CDS Lcho_3551 NC_010524.1 3972349 3973017 R KEGG: mms:mma_0454 hypothetical protein; hypothetical protein complement(3972349..3973017) Leptothrix cholodnii SP-6 6160942 YP_001792571.1 CDS Lcho_3552 NC_010524.1 3973120 3973731 R KEGG: ajs:Ajs_0145 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(3973120..3973731) Leptothrix cholodnii SP-6 6161191 YP_001792572.1 CDS Lcho_3553 NC_010524.1 3974001 3975326 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0146 sigma54 specific transcriptional regulator, fis family; putative sigma-54 specific transcriptional regulator 3974001..3975326 Leptothrix cholodnii SP-6 6161192 YP_001792573.1 CDS Lcho_3554 NC_010524.1 3975365 3975766 D PFAM: Invasion gene expression up-regulator SirB; KEGG: pol:Bpro_4728 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator SirB 3975365..3975766 Leptothrix cholodnii SP-6 6161193 YP_001792574.1 CDS Lcho_3555 NC_010524.1 3975814 3976296 D SMART: Water Stress and Hypersensitive response domain protein; KEGG: bte:BTH_I2944 hypothetical protein; water stress/hypersensitive response domain-containing protein 3975814..3976296 Leptothrix cholodnii SP-6 6161194 YP_001792575.1 CDS Lcho_3556 NC_010524.1 3976318 3976890 R KEGG: vei:Veis_3393 hypothetical protein; hypothetical protein complement(3976318..3976890) Leptothrix cholodnii SP-6 6161195 YP_001792576.1 CDS Lcho_3557 NC_010524.1 3976926 3978203 R PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A1825 hypothetical protein; hypothetical protein complement(3976926..3978203) Leptothrix cholodnii SP-6 6161196 YP_001792577.1 CDS Lcho_3558 NC_010524.1 3978200 3978931 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1826 putative ATP-binding component of ABC transporter; ABC transporter-like protein complement(3978200..3978931) Leptothrix cholodnii SP-6 6161197 YP_001792578.1 CDS Lcho_3559 NC_010524.1 3978919 3979485 R KEGG: vei:Veis_3396 ABC-type metal ion transport system, periplasmic component/surface adhesin; ABC-type metal ion transport system, periplasmic component/surface adhesin complement(3978919..3979485) Leptothrix cholodnii SP-6 6161053 YP_001792579.1 CDS Lcho_3560 NC_010524.1 3979563 3980486 R PFAM: periplasmic solute binding protein; KEGG: mex:Mext_2875 periplasmic solute binding protein; periplasmic solute-binding protein complement(3979563..3980486) Leptothrix cholodnii SP-6 6161054 YP_001792580.1 CDS Lcho_3561 NC_010524.1 3980486 3981373 R PFAM: ABC-3 protein; KEGG: cvi:CV_3065 high-affinity zinc transport system permease protein; ABC-3 protein complement(3980486..3981373) Leptothrix cholodnii SP-6 6161055 YP_001792581.1 CDS Lcho_3562 NC_010524.1 3981420 3982154 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP3082 putative transport protein ATP-binding; ABC transporter-like protein complement(3981420..3982154) Leptothrix cholodnii SP-6 6161056 YP_001792582.1 CDS Lcho_3563 NC_010524.1 3982151 3982246 R hypothetical protein complement(3982151..3982246) Leptothrix cholodnii SP-6 6161057 YP_001792583.1 CDS Lcho_3564 NC_010524.1 3982243 3982656 R PFAM: ferric-uptake regulator; KEGG: dac:Daci_4458 ferric uptake regulator, Fur family; ferric uptake regulator family protein complement(3982243..3982656) Leptothrix cholodnii SP-6 6161058 YP_001792584.1 CDS Lcho_3565 NC_010524.1 3982839 3983516 R PFAM: 17 kDa surface antigen; KEGG: mpt:Mpe_A0169 hypothetical protein; 17 kDa surface antigen complement(3982839..3983516) Leptothrix cholodnii SP-6 6161059 YP_001792585.1 CDS Lcho_3566 NC_010524.1 3983828 3984223 D PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein; histone family protein DNA-binding protein 3983828..3984223 Leptothrix cholodnii SP-6 6160996 YP_001792586.1 CDS Lcho_3567 NC_010524.1 3984267 3985262 R KEGG: gvi:gll1989 unknown protein; hypothetical protein complement(3984267..3985262) Leptothrix cholodnii SP-6 6160997 YP_001792587.1 CDS Lcho_3568 NC_010524.1 3985333 3987381 R catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase complement(3985333..3987381) Leptothrix cholodnii SP-6 6160998 YP_001792588.1 CDS Lcho_3569 NC_010524.1 3987413 3988501 R TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mpt:Mpe_A0991 putative ring-hydroxylation complex protein 4; phenylacetate-CoA oxygenase/reductase subunit PaaK complement(3987413..3988501) Leptothrix cholodnii SP-6 6160999 YP_001792589.1 CDS Lcho_3570 NC_010524.1 3988498 3988614 R hypothetical protein complement(3988498..3988614) Leptothrix cholodnii SP-6 6161000 YP_001792590.1 CDS Lcho_3571 NC_010524.1 3988623 3989174 R TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: dac:Daci_0813 phenylacetate-CoA oxygenase, PaaJ subunit; phenylacetate-CoA oxygenase subunit PaaJ complement(3988623..3989174) Leptothrix cholodnii SP-6 6161001 YP_001792591.1 CDS Lcho_3572 NC_010524.1 3989171 3989962 R TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: dac:Daci_0812 phenylacetate-CoA oxygenase, PaaI subunit; phenylacetate-CoA oxygenase subunit PaaI complement(3989171..3989962) Leptothrix cholodnii SP-6 6161002 YP_001792592.1 CDS paaB NC_010524.1 3989971 3990273 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB complement(3989971..3990273) Leptothrix cholodnii SP-6 6163143 YP_001792593.1 CDS paaA NC_010524.1 3990298 3991326 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA complement(3990298..3991326) Leptothrix cholodnii SP-6 6163144 YP_001792594.1 CDS Lcho_3575 NC_010524.1 3991486 3992493 D PFAM: basic membrane lipoprotein; KEGG: vei:Veis_4425 basic membrane lipoprotein; basic membrane lipoprotein 3991486..3992493 Leptothrix cholodnii SP-6 6163145 YP_001792595.1 CDS Lcho_3576 NC_010524.1 3992516 3994168 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_4427 ABC transporter related; ABC transporter-like protein 3992516..3994168 Leptothrix cholodnii SP-6 6163146 YP_001792596.1 CDS Lcho_3577 NC_010524.1 3994179 3995261 D PFAM: inner-membrane translocator; KEGG: vei:Veis_4428 inner-membrane translocator; inner-membrane translocator 3994179..3995261 Leptothrix cholodnii SP-6 6163147 YP_001792597.1 CDS Lcho_3578 NC_010524.1 3995258 3996181 D PFAM: inner-membrane translocator; KEGG: vei:Veis_4429 inner-membrane translocator; inner-membrane translocator 3995258..3996181 Leptothrix cholodnii SP-6 6163148 YP_001792598.1 CDS Lcho_3579 NC_010524.1 3996217 3997113 D KEGG: mpt:Mpe_A2078 hypothetical protein; hypothetical protein 3996217..3997113 Leptothrix cholodnii SP-6 6163149 YP_001792599.1 CDS Lcho_3580 NC_010524.1 3997124 3997918 D PFAM: molybdopterin binding domain; KEGG: mpt:Mpe_A2077 hypothetical protein; molybdopterin-binding domain-containing protein 3997124..3997918 Leptothrix cholodnii SP-6 6162866 YP_001792600.1 CDS Lcho_3581 NC_010524.1 3998123 3999538 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: mpt:Mpe_A2076 glutamate--ammonia ligase; glutamine synthetase 3998123..3999538 Leptothrix cholodnii SP-6 6162867 YP_001792601.1 CDS Lcho_3582 NC_010524.1 3999715 4000206 D KEGG: mpt:Mpe_A2075 conserved hypothetical signal peptide protein; putative signal peptide protein 3999715..4000206 Leptothrix cholodnii SP-6 6162868 YP_001792602.1 CDS Lcho_3583 NC_010524.1 4000203 4001276 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: mpt:Mpe_A2074 putative nitrogen regulation protein NR(II); signal transduction histidine kinase, nitrogen specific, NtrB 4000203..4001276 Leptothrix cholodnii SP-6 6162869 YP_001792603.1 CDS Lcho_3584 NC_010524.1 4001330 4002814 D KEGG: mpt:Mpe_A2073 putative nitrogen assimilation regulatory response regulator transcription regulator protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 4001330..4002814 Leptothrix cholodnii SP-6 6162870 YP_001792604.1 CDS Lcho_3585 NC_010524.1 4003108 4003755 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_3105 putative transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 4003108..4003755 Leptothrix cholodnii SP-6 6162871 YP_001792605.1 CDS Lcho_3586 NC_010524.1 4003802 4004689 R PFAM: dienelactone hydrolase; KEGG: mpt:Mpe_A3005 carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(4003802..4004689) Leptothrix cholodnii SP-6 6162872 YP_001792606.1 CDS Lcho_3587 NC_010524.1 4004689 4004790 R hypothetical protein complement(4004689..4004790) Leptothrix cholodnii SP-6 6162757 YP_001792607.1 CDS Lcho_3588 NC_010524.1 4004851 4005555 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_0224 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator complement(4004851..4005555) Leptothrix cholodnii SP-6 6162758 YP_001792608.1 CDS Lcho_3589 NC_010524.1 4005563 4007521 R KEGG: pna:Pnap_3281 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase complement(4005563..4007521) Leptothrix cholodnii SP-6 6162759 YP_001792609.1 CDS Lcho_3590 NC_010524.1 4007704 4009347 D PFAM: AMP-dependent synthetase and ligase; KEGG: pna:Pnap_3282 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4007704..4009347 Leptothrix cholodnii SP-6 6162760 YP_001792610.1 CDS Lcho_3591 NC_010524.1 4009358 4010110 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_3520 ABC transporter-related protein; ABC transporter-like protein 4009358..4010110 Leptothrix cholodnii SP-6 6162761 YP_001792611.1 CDS Lcho_3592 NC_010524.1 4010107 4010826 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo0118 ABC transporter ATP-binding protein; ABC transporter-like protein 4010107..4010826 Leptothrix cholodnii SP-6 6162762 YP_001792612.1 CDS Lcho_3593 NC_010524.1 4010876 4012087 D KEGG: azo:azo0119 probable ABC transporter substrate binding protein; putative ABC transporter substrate-binding protein 4010876..4012087 Leptothrix cholodnii SP-6 6162763 YP_001792613.1 CDS Lcho_3594 NC_010524.1 4012103 4012987 D PFAM: inner-membrane translocator; KEGG: eba:ebA3426 probable transmembrane ABC transporter protein; inner-membrane translocator 4012103..4012987 Leptothrix cholodnii SP-6 6162587 YP_001792614.1 CDS Lcho_3595 NC_010524.1 4013001 4013936 D PFAM: inner-membrane translocator; KEGG: azo:azo0121 putative branched-chain amino acid transport permease; inner-membrane translocator 4013001..4013936 Leptothrix cholodnii SP-6 6162588 YP_001792615.1 CDS Lcho_3596 NC_010524.1 4013971 4015752 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azo:azo1702 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4013971..4015752 Leptothrix cholodnii SP-6 6162589 YP_001792616.1 CDS Lcho_3597 NC_010524.1 4015769 4016245 D PFAM: MaoC domain protein dehydratase; KEGG: pna:Pnap_3284 MaoC domain protein dehydratase; dehydratase 4015769..4016245 Leptothrix cholodnii SP-6 6162590 YP_001792617.1 CDS Lcho_3598 NC_010524.1 4016262 4017011 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dac:Daci_2390 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit 4016262..4017011 Leptothrix cholodnii SP-6 6162591 YP_001792618.1 CDS Lcho_3599 NC_010524.1 4017014 4017940 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: mpt:Mpe_A1297 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha 4017014..4017940 Leptothrix cholodnii SP-6 6162592 YP_001792619.1 CDS Lcho_3600 NC_010524.1 4018249 4019793 D PFAM: Ppx/GppA phosphatase; KEGG: mpt:Mpe_A3006 exopolyphosphatase; Ppx/GppA phosphatase 4018249..4019793 Leptothrix cholodnii SP-6 6162593 YP_001792620.1 CDS Lcho_3601 NC_010524.1 4019842 4021902 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 4019842..4021902 Leptothrix cholodnii SP-6 6161835 YP_001792621.1 CDS Lcho_3602 NC_010524.1 4021969 4022556 D PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_4132 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4021969..4022556 Leptothrix cholodnii SP-6 6161836 YP_001792622.1 CDS Lcho_3603 NC_010524.1 4022493 4023680 R KEGG: eba:ebA5591 hypothetical protein; hypothetical protein complement(4022493..4023680) Leptothrix cholodnii SP-6 6161837 YP_001792623.1 CDS Lcho_3604 NC_010524.1 4023724 4024596 R TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; KEGG: bja:bll6631 probable phosphatidylserine decarboxylase proenzyme; phosphatidylserine decarboxylase complement(4023724..4024596) Leptothrix cholodnii SP-6 6161838 YP_001792624.1 CDS Lcho_3605 NC_010524.1 4024661 4026310 D PFAM: aminotransferase class-III; KEGG: bbt:BBta_6209 putative glutamate-1-semialdehyde 2,1-aminomutase (GSA) (glutamate-1-semialdehyde aminotransferase); class III aminotransferase 4024661..4026310 Leptothrix cholodnii SP-6 6161839 YP_001792625.1 CDS Lcho_3606 NC_010524.1 4026315 4026923 R KEGG: bbt:BBta_6210 putative membrane protein of unknown function; hypothetical protein complement(4026315..4026923) Leptothrix cholodnii SP-6 6161840 YP_001792626.1 CDS Lcho_3607 NC_010524.1 4027092 4028333 D PFAM: glycosyl transferase group 1; KEGG: azo:azo0856 glycosyltransferase; group 1 glycosyl transferase 4027092..4028333 Leptothrix cholodnii SP-6 6161841 YP_001792627.1 CDS Lcho_3608 NC_010524.1 4028299 4029567 R PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1454 hypothetical protein; lysophospholipid transporter LplT complement(4028299..4029567) Leptothrix cholodnii SP-6 6161769 YP_001792628.1 CDS Lcho_3609 NC_010524.1 4029673 4031421 R KEGG: pna:Pnap_1209 alkaline phosphatase; alkaline phosphatase complement(4029673..4031421) Leptothrix cholodnii SP-6 6161770 YP_001792629.1 CDS Lcho_3610 NC_010524.1 4031614 4033110 D PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: aci:ACIAD1197 hypothetical protein; adenylate cyclase 4031614..4033110 Leptothrix cholodnii SP-6 6161771 YP_001792630.1 CDS Lcho_3611 NC_010524.1 4033139 4035025 R PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dar:Daro_3576 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM complement(4033139..4035025) Leptothrix cholodnii SP-6 6161772 YP_001792631.1 CDS Lcho_3612 NC_010524.1 4035022 4036041 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dar:Daro_3577 TRAP dicarboxylate transporter-DctP subunit; TRAP C4-dicarboxylate transport system permease subunit DctP complement(4035022..4036041) Leptothrix cholodnii SP-6 6161773 YP_001792632.1 CDS Lcho_3613 NC_010524.1 4036077 4037018 R KEGG: dar:Daro_3578 hypothetical protein; hypothetical protein complement(4036077..4037018) Leptothrix cholodnii SP-6 6161774 YP_001792633.1 CDS Lcho_3614 NC_010524.1 4037141 4037371 D PFAM: SirA family protein; KEGG: ajs:Ajs_2898 SirA family protein; SirA family protein 4037141..4037371 Leptothrix cholodnii SP-6 6161775 YP_001792634.1 CDS Lcho_3615 NC_010524.1 4037346 4037633 R hypothetical protein complement(4037346..4037633) Leptothrix cholodnii SP-6 6163294 YP_001792635.1 CDS Lcho_3616 NC_010524.1 4037742 4039322 R PFAM: Ppx/GppA phosphatase; KEGG: mpt:Mpe_A3006 exopolyphosphatase; Ppx/GppA phosphatase complement(4037742..4039322) Leptothrix cholodnii SP-6 6163295 YP_001792636.1 CDS Lcho_3617 NC_010524.1 4039489 4040094 R KEGG: pna:Pnap_2210 hypothetical protein; hypothetical protein complement(4039489..4040094) Leptothrix cholodnii SP-6 6163296 YP_001792637.1 CDS Lcho_3618 NC_010524.1 4040134 4041222 R PFAM: Mg2 transporter protein CorA family protein; KEGG: mms:mma_2655 cation transporter (MIT family); Mg2 transporter protein CorA family protein complement(4040134..4041222) Leptothrix cholodnii SP-6 6163297 YP_001792638.1 CDS Lcho_3619 NC_010524.1 4041369 4042301 D PFAM: metallophosphoesterase; KEGG: ajs:Ajs_1203 metallophosphoesterase; metallophosphoesterase 4041369..4042301 Leptothrix cholodnii SP-6 6163298 YP_001792639.1 CDS Lcho_3620 NC_010524.1 4042381 4043316 D PFAM: phosphoesterase PA-phosphatase related; KEGG: azo:azo2159 conservd hypothetical membrane protein; PA-phosphatase-like phosphoesterase 4042381..4043316 Leptothrix cholodnii SP-6 6163299 YP_001792640.1 CDS Lcho_3621 NC_010524.1 4043316 4044314 D KEGG: afw:Anae109_4197 hypothetical protein; hypothetical protein 4043316..4044314 Leptothrix cholodnii SP-6 6163300 YP_001792641.1 CDS Lcho_3622 NC_010524.1 4044311 4045507 D PFAM: glycosyl transferase family 2; KEGG: afw:Anae109_4198 glycosyl transferase family 2; glycosyl transferase family protein 4044311..4045507 Leptothrix cholodnii SP-6 6163258 YP_001792642.1 CDS Lcho_3623 NC_010524.1 4045504 4047315 D PFAM: glycosyl transferase family 39; KEGG: azo:azo2162 conserved hypothetical protein, similar to glycosyltransferases; glycosyl transferase family protein 4045504..4047315 Leptothrix cholodnii SP-6 6163259 YP_001792643.1 CDS Lcho_3624 NC_010524.1 4047312 4049075 D KEGG: azo:azo2314 glycosyltransferase; glycosyltransferase 4047312..4049075 Leptothrix cholodnii SP-6 6163260 YP_001792644.1 CDS Lcho_3625 NC_010524.1 4049072 4049860 D PFAM: phosphoesterase PA-phosphatase related; KEGG: azo:azo2163 hypothetical protein; PA-phosphatase-like phosphoesterase 4049072..4049860 Leptothrix cholodnii SP-6 6163261 YP_001792645.1 CDS Lcho_3626 NC_010524.1 4049836 4050702 R KEGG: mpt:Mpe_A1135 UTP--glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(4049836..4050702) Leptothrix cholodnii SP-6 6163262 YP_001792646.1 CDS Lcho_3627 NC_010524.1 4050847 4051875 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mpt:Mpe_A1136 phosphoglycerate dehydrogenase-related protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic subunit 4050847..4051875 Leptothrix cholodnii SP-6 6163263 YP_001792647.1 CDS Lcho_3628 NC_010524.1 4051841 4054702 R TIGRFAM: valyl-tRNA synthetase; KEGG: mpt:Mpe_A1137 putative valyl-tRNA synthetase; valyl-tRNA synthetase complement(4051841..4054702) Leptothrix cholodnii SP-6 6163225 YP_001792648.1 CDS Lcho_3629 NC_010524.1 4054919 4055767 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 4054919..4055767 Leptothrix cholodnii SP-6 6163226 YP_001792649.1 CDS Lcho_3630 NC_010524.1 4055809 4056819 D PFAM: diacylglycerol kinase catalytic region; KEGG: tth:TTC1957 protein BmrU; diacylglycerol kinase catalytic subunit 4055809..4056819 Leptothrix cholodnii SP-6 6163227 YP_001792650.1 CDS Lcho_3631 NC_010524.1 4056851 4057771 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpd:RPD_0989 LysR, substrate-binding; LysR family transcriptional regulator 4056851..4057771 Leptothrix cholodnii SP-6 6163228 YP_001792651.1 CDS Lcho_3632 NC_010524.1 4057852 4058880 D PFAM: amidohydrolase 2; KEGG: dac:Daci_4449 amidohydrolase 2; amidohydrolase 2 4057852..4058880 Leptothrix cholodnii SP-6 6163229 YP_001792652.1 CDS Lcho_3633 NC_010524.1 4058883 4059578 D TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: pna:Pnap_2031 dimethylmenaquinone methyltransferase; hypothetical protein 4058883..4059578 Leptothrix cholodnii SP-6 6163230 YP_001792653.1 CDS Lcho_3634 NC_010524.1 4059589 4060530 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; Phosphogluconate dehydrogenase, NAD-binding, putative-like; KEGG: rfr:Rfer_0336 6-phosphogluconate dehydrogenase, NAD-binding; phosphogluconate dehydrogenase 4059589..4060530 Leptothrix cholodnii SP-6 6163231 YP_001792654.1 CDS Lcho_3635 NC_010524.1 4060534 4061478 D PFAM: amidohydrolase 2; KEGG: pna:Pnap_2029 amidohydrolase 2; amidohydrolase 2 4060534..4061478 Leptothrix cholodnii SP-6 6163170 YP_001792655.1 CDS Lcho_3636 NC_010524.1 4061836 4062276 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 4061836..4062276 Leptothrix cholodnii SP-6 6163171 YP_001792656.1 CDS Lcho_3637 NC_010524.1 4062278 4063135 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 4062278..4063135 Leptothrix cholodnii SP-6 6163172 YP_001792657.1 CDS Lcho_3638 NC_010524.1 4063147 4064103 D PFAM: oxidoreductase domain protein; KEGG: dac:Daci_4444 oxidoreductase domain protein; oxidoreductase domain-containing protein 4063147..4064103 Leptothrix cholodnii SP-6 6163173 YP_001792658.1 CDS Lcho_3639 NC_010524.1 4064127 4065077 D PFAM: Auxin Efflux Carrier; KEGG: eba:ebA5059 predicted permease; auxin efflux carrier 4064127..4065077 Leptothrix cholodnii SP-6 6163174 YP_001792659.1 CDS Lcho_3640 NC_010524.1 4065113 4066438 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: aav:Aave_3770 protein of unknown function DUF21; hypothetical protein complement(4065113..4066438) Leptothrix cholodnii SP-6 6163175 YP_001792660.1 CDS Lcho_3641 NC_010524.1 4066580 4068001 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: bpt:Bpet0011 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 4066580..4068001 Leptothrix cholodnii SP-6 6163176 YP_001792661.1 CDS Lcho_3642 NC_010524.1 4067967 4069193 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 4067967..4069193 Leptothrix cholodnii SP-6 6162679 YP_001792662.1 CDS Lcho_3643 NC_010524.1 4069190 4069900 D TIGRFAM: dethiobiotin synthase; KEGG: pna:Pnap_4031 dethiobiotin synthase; dethiobiotin synthase 4069190..4069900 Leptothrix cholodnii SP-6 6162680 YP_001792663.1 CDS Lcho_3644 NC_010524.1 4069991 4071028 D KEGG: pol:Bpro_1580 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 4069991..4071028 Leptothrix cholodnii SP-6 6162681 YP_001792664.1 CDS Lcho_3645 NC_010524.1 4071028 4072317 D PFAM: cytochrome P450; KEGG: pna:Pnap_4029 cytochrome P450; cytochrome P450 4071028..4072317 Leptothrix cholodnii SP-6 6162682 YP_001792665.1 CDS Lcho_3646 NC_010524.1 4072406 4072720 R PFAM: small multidrug resistance protein; KEGG: ppu:PP_1701 SugE protein; small multidrug resistance protein complement(4072406..4072720) Leptothrix cholodnii SP-6 6162683 YP_001792666.1 CDS Lcho_3647 NC_010524.1 4072831 4073832 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ppu:PP_2988 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(4072831..4073832) Leptothrix cholodnii SP-6 6162684 YP_001792667.1 CDS Lcho_3648 NC_010524.1 4074029 4074643 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator 4074029..4074643 Leptothrix cholodnii SP-6 6162685 YP_001792668.1 CDS Lcho_3649 NC_010524.1 4074711 4075424 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2954 ABC transporter related; ABC transporter-like protein complement(4074711..4075424) Leptothrix cholodnii SP-6 6162472 YP_001792669.1 CDS Lcho_3650 NC_010524.1 4075426 4076274 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0211 ABC transporter related; ABC transporter-like protein complement(4075426..4076274) Leptothrix cholodnii SP-6 6162473 YP_001792670.1 CDS Lcho_3651 NC_010524.1 4076271 4077278 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0212 inner-membrane translocator; inner-membrane translocator complement(4076271..4077278) Leptothrix cholodnii SP-6 6162474 YP_001792671.1 CDS Lcho_3652 NC_010524.1 4077359 4078240 R PFAM: inner-membrane translocator; KEGG: pna:Pnap_2951 inner-membrane translocator; inner-membrane translocator complement(4077359..4078240) Leptothrix cholodnii SP-6 6162475 YP_001792672.1 CDS Lcho_3653 NC_010524.1 4078367 4079539 R PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0214 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(4078367..4079539) Leptothrix cholodnii SP-6 6162476 YP_001792673.1 CDS Lcho_3654 NC_010524.1 4079536 4080354 R PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0215 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(4079536..4080354) Leptothrix cholodnii SP-6 6162477 YP_001792674.1 CDS Lcho_3655 NC_010524.1 4080351 4081946 R TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_0216 benzoate-CoA ligase family; benzoate-CoA ligase family complement(4080351..4081946) Leptothrix cholodnii SP-6 6161737 YP_001792675.1 CDS Lcho_3656 NC_010524.1 4081980 4083539 R PFAM: Aldehyde Dehydrogenase_; KEGG: pna:Pnap_2947 aldehyde dehydrogenase; aldehyde dehydrogenase complement(4081980..4083539) Leptothrix cholodnii SP-6 6161738 YP_001792676.1 CDS Lcho_3657 NC_010524.1 4083550 4084014 R KEGG: reh:H16_B1916 hypothetical protein; hypothetical protein complement(4083550..4084014) Leptothrix cholodnii SP-6 6161739 YP_001792677.1 CDS Lcho_3658 NC_010524.1 4084114 4085070 D consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator 4084114..4085070 Leptothrix cholodnii SP-6 6161740 YP_001792678.1 CDS Lcho_3659 NC_010524.1 4085185 4086852 D cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase 4085185..4086852 Leptothrix cholodnii SP-6 6161741 YP_001792679.1 CDS Lcho_3660 NC_010524.1 4086976 4088403 D KEGG: reh:H16_B1913 benzoyl-CoA dioxygenase B; benzoyl-CoA dioxygenase B 4086976..4088403 Leptothrix cholodnii SP-6 6161742 YP_001792680.1 CDS Lcho_3661 NC_010524.1 4088609 4089904 D TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pna:Pnap_2942 oxidoreductase FAD/NAD(P)-binding domain protein; benzoyl-CoA oxygenase/reductase, BoxA protein 4088609..4089904 Leptothrix cholodnii SP-6 6161743 YP_001792681.1 CDS Lcho_3662 NC_010524.1 4090048 4090851 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4090048..4090851 Leptothrix cholodnii SP-6 6160312 YP_001792682.1 CDS Lcho_3663 NC_010524.1 4090878 4092395 D PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pna:Pnap_2940 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase 4090878..4092395 Leptothrix cholodnii SP-6 6160313 YP_001792683.1 CDS Lcho_3664 NC_010524.1 4092419 4092874 D PFAM: MaoC domain protein dehydratase; KEGG: rfr:Rfer_0225 MaoC-like dehydratase; dehydratase 4092419..4092874 Leptothrix cholodnii SP-6 6160314 YP_001792684.1 CDS Lcho_3665 NC_010524.1 4092921 4094123 D KEGG: rfr:Rfer_0226 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 4092921..4094123 Leptothrix cholodnii SP-6 6160315 YP_001792685.1 CDS Lcho_3666 NC_010524.1 4094185 4098930 R KEGG: neu:NE0315 possible multicopper oxidase; putative multicopper oxidase complement(4094185..4098930) Leptothrix cholodnii SP-6 6160316 YP_001792686.1 CDS Lcho_3667 NC_010524.1 4099601 4100947 D KEGG: gsu:GSU1844 IPT/TIG domain protein, putative; IPT/TIG domain-containing protein 4099601..4100947 Leptothrix cholodnii SP-6 6160317 YP_001792687.1 CDS Lcho_3668 NC_010524.1 4100956 4103466 D PFAM: Fibronectin type III domain protein; KEGG: pen:PSEEN2822 hypothetical protein; fibronectin type III domain-containing protein 4100956..4103466 Leptothrix cholodnii SP-6 6160318 YP_001792688.1 CDS Lcho_3669 NC_010524.1 4103663 4104865 D catalyzes the formation of catechol from salicylate; salicylate hydroxylase 4103663..4104865 Leptothrix cholodnii SP-6 6160417 YP_001792689.1 CDS Lcho_3670 NC_010524.1 4104862 4105917 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: pna:Pnap_3145 cupin 2, conserved barrel domain protein; cupin 4104862..4105917 Leptothrix cholodnii SP-6 6160418 YP_001792690.1 CDS Lcho_3671 NC_010524.1 4105970 4106677 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pna:Pnap_3146 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 4105970..4106677 Leptothrix cholodnii SP-6 6160419 YP_001792691.1 CDS Lcho_3672 NC_010524.1 4106682 4107320 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: dac:Daci_3700 maleylacetoacetate isomerase; maleylacetoacetate isomerase 4106682..4107320 Leptothrix cholodnii SP-6 6160420 YP_001792692.1 CDS Lcho_3673 NC_010524.1 4107505 4108041 D KEGG: eba:ebA733 hypothetical protein; hypothetical protein 4107505..4108041 Leptothrix cholodnii SP-6 6160421 YP_001792693.1 CDS Lcho_3674 NC_010524.1 4108038 4109369 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: eba:ebA732 C4-dicarboxylate uptake permease; TRAP dicarboxylate transporter subunit DctM 4108038..4109369 Leptothrix cholodnii SP-6 6160422 YP_001792694.1 CDS Lcho_3675 NC_010524.1 4109413 4110447 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: eba:ebA729 dicarboxylate transport protein; TRAP C4-dicarboxylate transport system permease subunit DctP 4109413..4110447 Leptothrix cholodnii SP-6 6160423 YP_001792695.1 CDS Lcho_3676 NC_010524.1 4110633 4110857 D KEGG: pna:Pnap_3867 hypothetical protein; hypothetical protein 4110633..4110857 Leptothrix cholodnii SP-6 6160424 YP_001792696.1 CDS Lcho_3677 NC_010524.1 4110868 4111692 D PFAM: protein of unknown function DUF344; KEGG: xac:XAC0941 transcriptional regulator; hypothetical protein 4110868..4111692 Leptothrix cholodnii SP-6 6160425 YP_001792697.1 CDS Lcho_3678 NC_010524.1 4111705 4113432 R PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pna:Pnap_1803 ABC transporter domain protein; ABC transporter complement(4111705..4113432) Leptothrix cholodnii SP-6 6160426 YP_001792698.1 CDS Lcho_3679 NC_010524.1 4113496 4113948 R PFAM: CBS domain containing protein; KEGG: pna:Pnap_1141 putative signal-transduction protein with CBS domains; signal-transduction protein complement(4113496..4113948) Leptothrix cholodnii SP-6 6160427 YP_001792699.1 CDS Lcho_3680 NC_010524.1 4114075 4114635 R PFAM: Phosphoglycerate mutase; KEGG: aha:AHA_2360 phosphoglycerate mutase; phosphoglycerate mutase complement(4114075..4114635) Leptothrix cholodnii SP-6 6160428 YP_001792700.1 CDS Lcho_3681 NC_010524.1 4114804 4116981 D KEGG: rca:Rcas_1443 hypothetical protein; hypothetical protein 4114804..4116981 Leptothrix cholodnii SP-6 6160429 YP_001792701.1 CDS Lcho_3682 NC_010524.1 4116981 4118330 D KEGG: afw:Anae109_4000 metallophosphoesterase; hypothetical protein 4116981..4118330 Leptothrix cholodnii SP-6 6160455 YP_001792702.1 CDS Lcho_3683 NC_010524.1 4118349 4120100 R proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase complement(4118349..4120100) Leptothrix cholodnii SP-6 6160456 YP_001792703.1 CDS Lcho_3684 NC_010524.1 4120278 4121042 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pna:Pnap_1648 regulatory proteins, IclR; IclR family transcriptional regulator complement(4120278..4121042) Leptothrix cholodnii SP-6 6160457 YP_001792704.1 CDS Lcho_3685 NC_010524.1 4121204 4122097 D PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: pol:Bpro_1847 shikimate 5-dehydrogenase; shikimate dehydrogenase 4121204..4122097 Leptothrix cholodnii SP-6 6160458 YP_001792705.1 CDS Lcho_3686 NC_010524.1 4122164 4123315 D PFAM: Extracellular ligand-binding receptor; KEGG: pna:Pnap_1650 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4122164..4123315 Leptothrix cholodnii SP-6 6160459 YP_001792706.1 CDS Lcho_3687 NC_010524.1 4123413 4124288 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1849 inner-membrane translocator; inner-membrane translocator 4123413..4124288 Leptothrix cholodnii SP-6 6160460 YP_001792707.1 CDS Lcho_3688 NC_010524.1 4124310 4125302 D PFAM: inner-membrane translocator; KEGG: pna:Pnap_1652 inner-membrane translocator; inner-membrane translocator 4124310..4125302 Leptothrix cholodnii SP-6 6160461 YP_001792708.1 CDS Lcho_3689 NC_010524.1 4125299 4126057 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_1653 ABC transporter related; ABC transporter-like protein 4125299..4126057 Leptothrix cholodnii SP-6 6161087 YP_001792709.1 CDS Lcho_3690 NC_010524.1 4126059 4126808 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1852 ABC transporter related; ABC transporter-like protein 4126059..4126808 Leptothrix cholodnii SP-6 6161088 YP_001792710.1 CDS Lcho_3691 NC_010524.1 4126961 4127848 D KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 4126961..4127848 Leptothrix cholodnii SP-6 6161089 YP_001792711.1 CDS Lcho_3692 NC_010524.1 4127862 4128779 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pna:Pnap_1656 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 4127862..4128779 Leptothrix cholodnii SP-6 6161090 YP_001792712.1 CDS Lcho_3693 NC_010524.1 4128857 4129168 D KEGG: dac:Daci_4212 hypothetical protein; hypothetical protein 4128857..4129168 Leptothrix cholodnii SP-6 6161091 YP_001792713.1 CDS Lcho_3694 NC_010524.1 4129236 4130495 D PFAM: nucleoside recognition domain protein; KEGG: dar:Daro_3256 nucleoside recognition; nucleoside recognition domain-containing protein 4129236..4130495 Leptothrix cholodnii SP-6 6161092 YP_001792714.1 CDS Lcho_3695 NC_010524.1 4130559 4131557 D PFAM: aldo/keto reductase; KEGG: azo:azo2535 probable aldo-keto reductase; aldo/keto reductase 4130559..4131557 Leptothrix cholodnii SP-6 6161093 YP_001792715.1 CDS Lcho_3696 NC_010524.1 4131671 4132276 D hypothetical protein 4131671..4132276 Leptothrix cholodnii SP-6 6163351 YP_001792716.1 CDS Lcho_3697 NC_010524.1 4132268 4133191 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_2732 putative transcriptional regulatory protein, LysR family; LysR family transcriptional regulator complement(4132268..4133191) Leptothrix cholodnii SP-6 6163352 YP_001792717.1 CDS Lcho_3698 NC_010524.1 4133311 4133673 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 4133311..4133673 Leptothrix cholodnii SP-6 6163353 YP_001792718.1 CDS Lcho_3699 NC_010524.1 4133678 4134592 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 4133678..4134592 Leptothrix cholodnii SP-6 6163354 YP_001792719.1 CDS Lcho_3700 NC_010524.1 4134728 4135804 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppd:Ppro_0900 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 4134728..4135804 Leptothrix cholodnii SP-6 6163355 YP_001792720.1 CDS Lcho_3701 NC_010524.1 4135851 4137338 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 4135851..4137338 Leptothrix cholodnii SP-6 6163356 YP_001792721.1 CDS Lcho_3702 NC_010524.1 4137375 4139966 R KEGG: rfr:Rfer_2262 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(4137375..4139966) Leptothrix cholodnii SP-6 6163357 YP_001792722.1 CDS Lcho_3703 NC_010524.1 4139963 4143028 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: rfr:Rfer_2263 periplasmic sensor hybrid histidine kinase; Hpt sensor hybrid histidine kinase complement(4139963..4143028) Leptothrix cholodnii SP-6 6162803 YP_001792723.1 CDS Lcho_3704 NC_010524.1 4143025 4143930 R KEGG: rfr:Rfer_2264 hypothetical protein; hypothetical protein complement(4143025..4143930) Leptothrix cholodnii SP-6 6162804 YP_001792724.1 CDS Lcho_3705 NC_010524.1 4144068 4144802 R PFAM: peptidase M48 Ste24p; KEGG: mpt:Mpe_A0578 hypothetical protein; peptidase M48 Ste24p complement(4144068..4144802) Leptothrix cholodnii SP-6 6162805 YP_001792725.1 CDS Lcho_3706 NC_010524.1 4145137 4146633 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 4145137..4146633 Leptothrix cholodnii SP-6 6162806 YP_001792726.1 CDS Lcho_3707 NC_010524.1 4146630 4147943 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_3548 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4146630..4147943 Leptothrix cholodnii SP-6 6162807 YP_001792727.1 CDS Lcho_3708 NC_010524.1 4147940 4148704 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2824 ABC transporter related; ABC transporter-like protein 4147940..4148704 Leptothrix cholodnii SP-6 6162808 YP_001792728.1 CDS Lcho_3709 NC_010524.1 4148704 4149915 D PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3916 protein of unknown function DUF214; hypothetical protein 4148704..4149915 Leptothrix cholodnii SP-6 6162189 YP_001792729.1 CDS Lcho_3710 NC_010524.1 4149979 4150917 R KEGG: dac:Daci_0052 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein complement(4149979..4150917) Leptothrix cholodnii SP-6 6162190 YP_001792730.1 CDS Lcho_3711 NC_010524.1 4151084 4151671 R SMART: Rhodanese domain protein; KEGG: dar:Daro_1929 rhodanese-like; rhodanese domain-containing protein complement(4151084..4151671) Leptothrix cholodnii SP-6 6162191 YP_001792731.1 CDS Lcho_3712 NC_010524.1 4151784 4153220 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein complement(4151784..4153220) Leptothrix cholodnii SP-6 6162192 YP_001792732.1 CDS Lcho_3713 NC_010524.1 4153223 4156399 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pna:Pnap_2886 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(4153223..4156399) Leptothrix cholodnii SP-6 6162193 YP_001792733.1 CDS Lcho_3714 NC_010524.1 4156410 4157636 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2035 secretion protein HlyD; RND family efflux transporter MFP subunit complement(4156410..4157636) Leptothrix cholodnii SP-6 6162194 YP_001792734.1 CDS Lcho_3715 NC_010524.1 4157850 4158476 D PFAM: regulatory protein TetR; KEGG: rfr:Rfer_2067 transcriptional regulator, TetR family; TetR family transcriptional regulator 4157850..4158476 Leptothrix cholodnii SP-6 6162195 YP_001792735.1 CDS Lcho_3716 NC_010524.1 4158493 4158804 R PFAM: protein of unknown function DUF1232; KEGG: pol:Bpro_2926 hypothetical protein; hypothetical protein complement(4158493..4158804) Leptothrix cholodnii SP-6 6161727 YP_001792736.1 CDS Lcho_3717 NC_010524.1 4158994 4159440 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rfr:Rfer_2543 hypothetical protein; activator of Hsp90 ATPase 1 family protein 4158994..4159440 Leptothrix cholodnii SP-6 6161728 YP_001792737.1 CDS Lcho_3718 NC_010524.1 4159556 4159885 D KEGG: pol:Bpro_0891 cupin 2, conserved barrel; cupin 4159556..4159885 Leptothrix cholodnii SP-6 6161729 YP_001792738.1 CDS Lcho_3719 NC_010524.1 4160015 4162117 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4160015..4162117 Leptothrix cholodnii SP-6 6161730 YP_001792739.1 CDS Lcho_3720 NC_010524.1 4162163 4163860 R KEGG: pna:Pnap_3103 hypothetical protein; hypothetical protein complement(4162163..4163860) Leptothrix cholodnii SP-6 6161731 YP_001792740.1 CDS Lcho_3721 NC_010524.1 4163882 4164985 R PFAM: basic membrane lipoprotein; KEGG: rfr:Rfer_3296 basic membrane lipoprotein; basic membrane lipoprotein complement(4163882..4164985) Leptothrix cholodnii SP-6 6161732 YP_001792741.1 CDS Lcho_3722 NC_010524.1 4165114 4165377 R hypothetical protein complement(4165114..4165377) Leptothrix cholodnii SP-6 6161733 YP_001792742.1 CDS Lcho_3723 NC_010524.1 4165463 4166374 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: mpt:Mpe_A1176 putative FdhD protein; formate dehydrogenase family accessory protein FdhD complement(4165463..4166374) Leptothrix cholodnii SP-6 6162532 YP_001792743.1 CDS Lcho_3724 NC_010524.1 4166384 4166737 R KEGG: pol:Bpro_0941 hypothetical protein; hypothetical protein complement(4166384..4166737) Leptothrix cholodnii SP-6 6162533 YP_001792744.1 CDS Lcho_3725 NC_010524.1 4166764 4167918 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: mpt:Mpe_A1173 formate dehydrogenase subunit C precursor; formate dehydrogenase subunit gamma complement(4166764..4167918) Leptothrix cholodnii SP-6 6162534 YP_001792745.1 CDS Lcho_3726 NC_010524.1 4167944 4168177 R KEGG: pol:Bpro_0939 putative lipoprotein; putative lipoprotein complement(4167944..4168177) Leptothrix cholodnii SP-6 6162535 YP_001792746.1 CDS Lcho_3727 NC_010524.1 4168174 4168818 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mpt:Mpe_A1171 formate dehydrogenase iron-sulfur subunit; 4Fe-4S ferredoxin complement(4168174..4168818) Leptothrix cholodnii SP-6 6162536 YP_001792747.1 CDS Lcho_3728 NC_010524.1 4168928 4171912 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mpt:Mpe_A1170 formate dehydrogenase large subunit precursor; molybdopterin oxidoreductase complement(4168928..4171912) Leptothrix cholodnii SP-6 6162537 YP_001792748.1 CDS Lcho_3729 NC_010524.1 4171941 4172180 R hypothetical protein complement(4171941..4172180) Leptothrix cholodnii SP-6 6162538 YP_001792749.1 CDS Lcho_3730 NC_010524.1 4172390 4172869 D KEGG: mpt:Mpe_A1164 hypothetical protein; hypothetical protein 4172390..4172869 Leptothrix cholodnii SP-6 6163763 YP_001792750.1 CDS Lcho_3731 NC_010524.1 4172878 4173507 D KEGG: mpt:Mpe_A1165 proline rich protein; proline rich protein 4172878..4173507 Leptothrix cholodnii SP-6 6163764 YP_001792751.1 CDS Lcho_3732 NC_010524.1 4173413 4175644 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mpt:Mpe_A1166 putative iron-sulfur binding protein; 4Fe-4S ferredoxin 4173413..4175644 Leptothrix cholodnii SP-6 6163765 YP_001792752.1 CDS Lcho_3733 NC_010524.1 4175660 4176304 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: mpt:Mpe_A1167 hypothetical protein; cytoplasmic chaperone TorD family protein 4175660..4176304 Leptothrix cholodnii SP-6 6163766 YP_001792753.1 CDS mobA NC_010524.1 4176304 4176903 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4176304..4176903 Leptothrix cholodnii SP-6 6163767 YP_001792754.1 CDS Lcho_3735 NC_010524.1 4176890 4178269 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A1169 sigma-54 dependent response regulator; two component sigma-54 specific Fis family transcriptional regulator 4176890..4178269 Leptothrix cholodnii SP-6 6163768 YP_001792755.1 CDS Lcho_3736 NC_010524.1 4178269 4180296 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1168 sensor histidine kinase; histidine kinase 4178269..4180296 Leptothrix cholodnii SP-6 6163821 YP_001792756.1 CDS Lcho_3737 NC_010524.1 4180690 4182180 D PFAM: outer membrane efflux protein; KEGG: azo:azo2554 putative outer membrane efflux protein; outer membrane efflux protein 4180690..4182180 Leptothrix cholodnii SP-6 6163822 YP_001792757.1 CDS Lcho_3738 NC_010524.1 4182230 4183027 D KEGG: azo:azo2555 HlyD family secretion protein; HlyD family secretion protein 4182230..4183027 Leptothrix cholodnii SP-6 6163823 YP_001792758.1 CDS Lcho_3739 NC_010524.1 4183129 4195824 D KEGG: sde:Sde_3233 hypothetical protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Cadherin; glycosyl hydrolase BNR repeat-containing protein; Ig family protein; LVIVD repeat protein; SMART: Dystroglycan-type cadherin domain protein; outer membrane adhesin-like protein 4183129..4195824 Leptothrix cholodnii SP-6 6163824 YP_001792759.1 CDS Lcho_3740 NC_010524.1 4195907 4197232 D KEGG: azo:azo2557 HlyD family secretion protein; HlyD family secretion protein 4195907..4197232 Leptothrix cholodnii SP-6 6163825 YP_001792760.1 CDS Lcho_3741 NC_010524.1 4197234 4199396 D KEGG: azo:azo2558 membrane protein with HlyD domain; HlyD domain-containing protein 4197234..4199396 Leptothrix cholodnii SP-6 6163826 YP_001792761.1 CDS Lcho_3742 NC_010524.1 4199409 4200479 R KEGG: mpt:Mpe_A0809 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase complement(4199409..4200479) Leptothrix cholodnii SP-6 6163827 YP_001792762.1 CDS Lcho_3743 NC_010524.1 4200715 4201839 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3761 secretion protein HlyD; RND family efflux transporter MFP subunit 4200715..4201839 Leptothrix cholodnii SP-6 6161212 YP_001792763.1 CDS Lcho_3744 NC_010524.1 4201861 4205163 D PFAM: acriflavin resistance protein; KEGG: rfr:Rfer_3760 acriflavin resistance protein; acriflavin resistance protein 4201861..4205163 Leptothrix cholodnii SP-6 6161213 YP_001792764.1 CDS Lcho_3745 NC_010524.1 4205185 4205409 D KEGG: rfr:Rfer_3758 hypothetical protein; hypothetical protein 4205185..4205409 Leptothrix cholodnii SP-6 6161214 YP_001792765.1 CDS Lcho_3746 NC_010524.1 4205502 4205792 D PFAM: protein of unknown function DUF156; KEGG: rfr:Rfer_3757 hypothetical protein; hypothetical protein 4205502..4205792 Leptothrix cholodnii SP-6 6161215 YP_001792766.1 CDS Lcho_3747 NC_010524.1 4205843 4206289 D PFAM: OsmC family protein; KEGG: pna:Pnap_2833 OsmC family protein; OsmC family protein 4205843..4206289 Leptothrix cholodnii SP-6 6161216 YP_001792767.1 CDS Lcho_3748 NC_010524.1 4206315 4206671 R PFAM: regulatory protein ArsR; KEGG: mpt:Mpe_A2424 transcriptional regulator; ArsR family transcriptional regulator complement(4206315..4206671) Leptothrix cholodnii SP-6 6161217 YP_001792768.1 CDS Lcho_3749 NC_010524.1 4206748 4207104 R KEGG: mpt:Mpe_A2425 hypothetical protein; hypothetical protein complement(4206748..4207104) Leptothrix cholodnii SP-6 6161218 YP_001792769.1 CDS Lcho_3750 NC_010524.1 4207152 4207901 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A1484 haloacid dehalogenase; HAD family hydrolase complement(4207152..4207901) Leptothrix cholodnii SP-6 6164020 YP_001792770.1 CDS Lcho_3751 NC_010524.1 4207912 4208949 R KEGG: rme:Rmet_1518 fructose-bisphosphate aldolase, class II, Calvin cycle subtype; TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase complement(4207912..4208949) Leptothrix cholodnii SP-6 6164021 YP_001792771.1 CDS Lcho_3752 NC_010524.1 4208989 4209702 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rme:Rmet_1514 phosphoglycolate phosphatase; HAD family hydrolase complement(4208989..4209702) Leptothrix cholodnii SP-6 6164022 YP_001792772.1 CDS Lcho_3753 NC_010524.1 4209745 4211772 R TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: rme:Rmet_1513 transketolase; transketolase complement(4209745..4211772) Leptothrix cholodnii SP-6 6164023 YP_001792773.1 CDS Lcho_3754 NC_010524.1 4211802 4212686 R PFAM: phosphoribulokinase/uridine kinase; KEGG: rfr:Rfer_1392 phosphoribulokinase; phosphoribulokinase complement(4211802..4212686) Leptothrix cholodnii SP-6 6164024 YP_001792774.1 CDS Lcho_3755 NC_010524.1 4212804 4213901 R PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: rme:Rmet_1511 inositol phosphatase/fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase complement(4212804..4213901) Leptothrix cholodnii SP-6 6164025 YP_001792775.1 CDS Lcho_3756 NC_010524.1 4213950 4214627 R PFAM: ribulose-phosphate 3-epimerase; KEGG: ajs:Ajs_0361 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(4213950..4214627) Leptothrix cholodnii SP-6 6164026 YP_001792776.1 CDS Lcho_3757 NC_010524.1 4214751 4215701 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A1477 regulatory protein, LysR family; LysR family transcriptional regulator 4214751..4215701 Leptothrix cholodnii SP-6 6163994 YP_001792777.1 CDS Lcho_3758 NC_010524.1 4215702 4216751 R PFAM: regulatory protein MerR; KEGG: bvi:Bcep1808_5897 putative transcriptional regulator, MerR family; MerR family transcriptional regulator complement(4215702..4216751) Leptothrix cholodnii SP-6 6163995 YP_001792778.1 CDS Lcho_3759 NC_010524.1 4217025 4218287 D PFAM: protein of unknown function DUF445; KEGG: pna:Pnap_0221 protein of unknown function DUF445; hypothetical protein 4217025..4218287 Leptothrix cholodnii SP-6 6163996 YP_001792779.1 CDS Lcho_3760 NC_010524.1 4218307 4218894 R KEGG: pna:Pnap_3563 hypothetical protein; hypothetical protein complement(4218307..4218894) Leptothrix cholodnii SP-6 6163997 YP_001792780.1 CDS Lcho_3761 NC_010524.1 4218915 4219574 R PFAM: protein of unknown function DUF938; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3364 protein of unknown function DUF938; hypothetical protein complement(4218915..4219574) Leptothrix cholodnii SP-6 6163998 YP_001792781.1 CDS Lcho_3762 NC_010524.1 4219623 4221575 R PFAM: K potassium transporter; KEGG: pol:Bpro_4252 K+ potassium transporter; K potassium transporter complement(4219623..4221575) Leptothrix cholodnii SP-6 6163999 YP_001792782.1 CDS Lcho_3763 NC_010524.1 4221663 4222394 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4253 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(4221663..4222394) Leptothrix cholodnii SP-6 6162950 YP_001792783.1 CDS Lcho_3764 NC_010524.1 4222391 4224028 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_4254 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(4222391..4224028) Leptothrix cholodnii SP-6 6162951 YP_001792784.1 CDS Lcho_3765 NC_010524.1 4224109 4226358 R PFAM: von Willebrand factor type A; KEGG: pna:Pnap_1976 von Willebrand factor, type A; von Willebrand factor type A complement(4224109..4226358) Leptothrix cholodnii SP-6 6162952 YP_001792785.1 CDS Lcho_3766 NC_010524.1 4226372 4227178 R PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: pna:Pnap_1977 CbbQ/NirQ/NorQ C-terminal domain protein; CbbQ/NirQ/NorQ domain-containing protein complement(4226372..4227178) Leptothrix cholodnii SP-6 6162953 YP_001792786.1 CDS Lcho_3767 NC_010524.1 4227514 4228896 R catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase complement(4227514..4228896) Leptothrix cholodnii SP-6 6162954 YP_001792787.1 CDS Lcho_3768 NC_010524.1 4229002 4229871 R PFAM: protein of unknown function DUF323; KEGG: ter:Tery_4351 serine/threonine protein kinase; hypothetical protein complement(4229002..4229871) Leptothrix cholodnii SP-6 6162955 YP_001792788.1 CDS Lcho_3769 NC_010524.1 4229925 4230428 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A2426 hypothetical protein; redoxin domain-containing protein complement(4229925..4230428) Leptothrix cholodnii SP-6 6162956 YP_001792789.1 CDS Lcho_3770 NC_010524.1 4230425 4231363 R PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A2427 beta lactamase precursor; beta-lactamase domain-containing protein complement(4230425..4231363) Leptothrix cholodnii SP-6 6162280 YP_001792790.1 CDS Lcho_3771 NC_010524.1 4231603 4231980 D KEGG: mpt:Mpe_A2428 putative cytochrome c; putative cytochrome c 4231603..4231980 Leptothrix cholodnii SP-6 6162281 YP_001792791.1 CDS Lcho_3772 NC_010524.1 4232001 4233302 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: mpt:Mpe_A2429 putative sulfide dehydrogenase flavocytochrome c oxidoreductase protein; flavocytochrome c sulfide dehydrogenase 4232001..4233302 Leptothrix cholodnii SP-6 6162282 YP_001792792.1 CDS Lcho_3773 NC_010524.1 4233386 4233817 D PFAM: Domain of unknown function DUF1791; KEGG: reh:H16_A3567 conserved hypothetical secreted protein; hypothetical protein 4233386..4233817 Leptothrix cholodnii SP-6 6162283 YP_001792793.1 CDS Lcho_3774 NC_010524.1 4233888 4235012 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_3126 YeeE/YedE; hypothetical protein 4233888..4235012 Leptothrix cholodnii SP-6 6162284 YP_001792794.1 CDS Lcho_3775 NC_010524.1 4235042 4235764 D hypothetical protein 4235042..4235764 Leptothrix cholodnii SP-6 6162285 YP_001792795.1 CDS Lcho_3776 NC_010524.1 4235799 4236920 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_4041 YeeE/YedE; hypothetical protein complement(4235799..4236920) Leptothrix cholodnii SP-6 6162286 YP_001792796.1 CDS Lcho_3777 NC_010524.1 4236952 4237134 R PFAM: SirA family protein; KEGG: tbd:Tbd_0574 hypothetical protein; SirA family protein complement(4236952..4237134) Leptothrix cholodnii SP-6 6161908 YP_001792797.1 CDS Lcho_3778 NC_010524.1 4237229 4238971 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mpt:Mpe_A2432 putative sulfur oxidation signal peptide protein; 5'-nucleotidase domain-containing protein complement(4237229..4238971) Leptothrix cholodnii SP-6 6161909 YP_001792798.1 CDS Lcho_3779 NC_010524.1 4239080 4239742 R KEGG: pol:Bpro_2626 hypothetical protein; hypothetical protein complement(4239080..4239742) Leptothrix cholodnii SP-6 6161910 YP_001792799.1 CDS Lcho_3780 NC_010524.1 4239763 4240572 R KEGG: mpt:Mpe_A2434 hypothetical protein; hypothetical protein complement(4239763..4240572) Leptothrix cholodnii SP-6 6161911 YP_001792800.1 CDS Lcho_3781 NC_010524.1 4240658 4240969 R PFAM: Sulphur oxidation protein SoxZ; KEGG: mpt:Mpe_A2435 hypothetical protein; sulfur oxidation protein SoxZ complement(4240658..4240969) Leptothrix cholodnii SP-6 6161912 YP_001792801.1 CDS Lcho_3782 NC_010524.1 4240987 4241445 R KEGG: mpt:Mpe_A2436 hypothetical protein; hypothetical protein complement(4240987..4241445) Leptothrix cholodnii SP-6 6161913 YP_001792802.1 CDS Lcho_3783 NC_010524.1 4241567 4242634 R PFAM: cytochrome c class I; KEGG: mpt:Mpe_A2437 diheme cytochrome c SoxD; cytochrome c class I complement(4241567..4242634) Leptothrix cholodnii SP-6 6161914 YP_001792803.1 CDS Lcho_3784 NC_010524.1 4242618 4243991 R PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: mpt:Mpe_A2438 putative sulfite oxidase molybdopterin subunit; molybdopterin-binding oxidoreductase complement(4242618..4243991) Leptothrix cholodnii SP-6 6161829 YP_001792804.1 CDS Lcho_3785 NC_010524.1 4244223 4245047 R KEGG: aav:Aave_3377 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor complement(4244223..4245047) Leptothrix cholodnii SP-6 6161830 YP_001792805.1 CDS Lcho_3786 NC_010524.1 4245066 4245608 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: aav:Aave_3376 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(4245066..4245608) Leptothrix cholodnii SP-6 6161831 YP_001792806.1 CDS Lcho_3787 NC_010524.1 4245645 4246034 R PFAM: Secreted repeat of unknown function; KEGG: dar:Daro_0520 secreted repeat of unknown function; hypothetical protein complement(4245645..4246034) Leptothrix cholodnii SP-6 6161832 YP_001792807.1 CDS Lcho_3788 NC_010524.1 4246192 4247208 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: aeh:Mlg_1275 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 4246192..4247208 Leptothrix cholodnii SP-6 6161833 YP_001792808.1 CDS Lcho_3789 NC_010524.1 4247337 4249127 D PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rme:Rmet_4706 type II and III secretion system protein; type II and III secretion system protein 4247337..4249127 Leptothrix cholodnii SP-6 6161834 YP_001792809.1 CDS Lcho_3790 NC_010524.1 4249158 4249439 R hypothetical protein complement(4249158..4249439) Leptothrix cholodnii SP-6 6160717 YP_001792810.1 CDS Lcho_3791 NC_010524.1 4249503 4250156 R PFAM: electron transport protein SCO1/SenC; KEGG: rso:RSc2292 putative transmembrane protein; electron transport protein SCO1/SenC complement(4249503..4250156) Leptothrix cholodnii SP-6 6160718 YP_001792811.1 CDS Lcho_3792 NC_010524.1 4250210 4252117 R KEGG: rme:Rmet_4696 hypothetical protein; hypothetical protein complement(4250210..4252117) Leptothrix cholodnii SP-6 6160719 YP_001792812.1 CDS Lcho_3793 NC_010524.1 4252114 4252896 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: gur:Gura_3046 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(4252114..4252896) Leptothrix cholodnii SP-6 6160720 YP_001792813.1 CDS Lcho_3794 NC_010524.1 4252992 4258913 R PFAM: Fibronectin type III domain protein; multicopper oxidase type 2; KEGG: gme:Gmet_2163 integrins alpha chain:multicopper oxidase, type 2; fibronectin type III domain-containing protein complement(4252992..4258913) Leptothrix cholodnii SP-6 6160721 YP_001792814.1 CDS Lcho_3795 NC_010524.1 4259551 4260702 D PFAM: chemotaxis sensory transducer; KEGG: rfr:Rfer_0898 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4259551..4260702 Leptothrix cholodnii SP-6 6160722 YP_001792815.1 CDS Lcho_3796 NC_010524.1 4260750 4261079 D PFAM: response regulator receiver; KEGG: rfr:Rfer_0899 response regulator receiver domain protein; response regulator receiver protein 4260750..4261079 Leptothrix cholodnii SP-6 6160723 YP_001792816.1 CDS Lcho_3797 NC_010524.1 4261096 4261428 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rfr:Rfer_0900 anti-sigma-factor antagonist (STAS) domain protein; anti-sigma-factor antagonist 4261096..4261428 Leptothrix cholodnii SP-6 6160785 YP_001792817.1 CDS Lcho_3798 NC_010524.1 4261450 4263648 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: rfr:Rfer_0901 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 4261450..4263648 Leptothrix cholodnii SP-6 6160786 YP_001792818.1 CDS Lcho_3799 NC_010524.1 4263808 4266126 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azo:azo0407 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4263808..4266126 Leptothrix cholodnii SP-6 6160787 YP_001792819.1 CDS Lcho_3800 NC_010524.1 4266149 4266679 D PFAM: CheW domain protein; KEGG: rfr:Rfer_0903 CheW protein; CheW protein 4266149..4266679 Leptothrix cholodnii SP-6 6160788 YP_001792820.1 CDS Lcho_3801 NC_010524.1 4266708 4267760 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 4266708..4267760 Leptothrix cholodnii SP-6 6160789 YP_001792821.1 CDS Lcho_3802 NC_010524.1 4267833 4268261 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: nha:Nham_4624 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 4267833..4268261 Leptothrix cholodnii SP-6 6160790 YP_001792822.1 CDS Lcho_3803 NC_010524.1 4268269 4268748 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2083 YeeE/YedE family protein; hypothetical protein 4268269..4268748 Leptothrix cholodnii SP-6 6160791 YP_001792823.1 CDS Lcho_3804 NC_010524.1 4268904 4269917 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: mpt:Mpe_A0122 thiosulfate binding protein; sulfate ABC transporter substrate-binding protein 4268904..4269917 Leptothrix cholodnii SP-6 6160483 YP_001792824.1 CDS Lcho_3805 NC_010524.1 4269924 4270757 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A0124 ABC type transporter; sulfate ABC transporter permease 4269924..4270757 Leptothrix cholodnii SP-6 6160484 YP_001792825.1 CDS Lcho_3806 NC_010524.1 4270757 4271770 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A0125 ABC type transporter; sulfate ABC transporter permease 4270757..4271770 Leptothrix cholodnii SP-6 6160485 YP_001792826.1 CDS Lcho_3807 NC_010524.1 4271798 4272865 D KEGG: mpt:Mpe_A0126 ABC type ATPase; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 4271798..4272865 Leptothrix cholodnii SP-6 6160486 YP_001792827.1 CDS Lcho_3808 NC_010524.1 4272914 4274371 R PFAM: PASTA domain containing protein; KEGG: azo:azo1264 putative transmembrane sensor protein; protein PASTA domain-containing protein complement(4272914..4274371) Leptothrix cholodnii SP-6 6160487 YP_001792828.1 CDS Lcho_3809 NC_010524.1 4274489 4276087 R PFAM: gamma-glutamyltranspeptidase; KEGG: bxe:Bxe_B1050 gamma-glutamyltransferase; gamma-glutamyltransferase complement(4274489..4276087) Leptothrix cholodnii SP-6 6160488 YP_001792829.1 CDS Lcho_3810 NC_010524.1 4276165 4277103 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_3039 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4276165..4277103) Leptothrix cholodnii SP-6 6160489 YP_001792830.1 CDS Lcho_3811 NC_010524.1 4277298 4277705 D KEGG: mpt:Mpe_A0118 hypothetical protein; hypothetical protein 4277298..4277705 Leptothrix cholodnii SP-6 6160618 YP_001792831.1 CDS Lcho_3812 NC_010524.1 4277729 4278403 R PFAM: Phosphoglycerate mutase; KEGG: vei:Veis_1484 phosphoglycerate mutase; phosphoglycerate mutase complement(4277729..4278403) Leptothrix cholodnii SP-6 6160619 YP_001792832.1 CDS Lcho_3813 NC_010524.1 4278557 4279018 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4278557..4279018 Leptothrix cholodnii SP-6 6160620 YP_001792833.1 CDS gpsA NC_010524.1 4279051 4280064 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4279051..4280064 Leptothrix cholodnii SP-6 6160621 YP_001792834.1 CDS Lcho_3815 NC_010524.1 4280091 4280561 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mpt:Mpe_A3185 putative tRNA/rRNA methyltransferase protein; RNA methyltransferase complement(4280091..4280561) Leptothrix cholodnii SP-6 6160622 YP_001792835.1 CDS Lcho_3816 NC_010524.1 4280618 4281418 R KEGG: mpt:Mpe_A3184 putative phosphoribosyl transferase; putative phosphoribosyl transferase complement(4280618..4281418) Leptothrix cholodnii SP-6 6160623 YP_001792836.1 CDS Lcho_3817 NC_010524.1 4281447 4282379 D KEGG: mpt:Mpe_A3183 biotin synthesis protein BioC; biotin synthesis protein BioC 4281447..4282379 Leptothrix cholodnii SP-6 6160624 YP_001792837.1 CDS Lcho_3818 NC_010524.1 4282746 4283912 D TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: mpt:Mpe_A3181 putative cytochrome c oxidase polypeptide II precursor; cytochrome c oxidase subunit II 4282746..4283912 Leptothrix cholodnii SP-6 6160442 YP_001792838.1 CDS Lcho_3819 NC_010524.1 4283942 4285576 D KEGG: ajs:Ajs_3536 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 4283942..4285576 Leptothrix cholodnii SP-6 6160443 YP_001792839.1 CDS Lcho_3820 NC_010524.1 4285579 4285692 D hypothetical protein 4285579..4285692 Leptothrix cholodnii SP-6 6160444 YP_001792840.1 CDS Lcho_3821 NC_010524.1 4285697 4286341 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4285697..4286341 Leptothrix cholodnii SP-6 6160445 YP_001792841.1 CDS Lcho_3822 NC_010524.1 4286338 4286589 D KEGG: mpt:Mpe_A3178 hypothetical protein; hypothetical protein 4286338..4286589 Leptothrix cholodnii SP-6 6160446 YP_001792842.1 CDS Lcho_3823 NC_010524.1 4286691 4287572 D PFAM: cytochrome c oxidase subunit III; KEGG: mpt:Mpe_A3177 putative cytochrome c oxidase subunit III transmembrane protein; cytochrome c oxidase subunit III 4286691..4287572 Leptothrix cholodnii SP-6 6160447 YP_001792843.1 CDS Lcho_3824 NC_010524.1 4287678 4287791 R KEGG: bch:Bcen2424_6561 hypothetical protein; hypothetical protein complement(4287678..4287791) Leptothrix cholodnii SP-6 6161888 YP_001792844.1 CDS Lcho_3825 NC_010524.1 4287904 4288659 D KEGG: mpt:Mpe_A3176 hypothetical protein; hypothetical protein 4287904..4288659 Leptothrix cholodnii SP-6 6161889 YP_001792845.1 CDS Lcho_3826 NC_010524.1 4288667 4289329 D KEGG: mpt:Mpe_A3175 hypothetical protein; hypothetical protein 4288667..4289329 Leptothrix cholodnii SP-6 6161890 YP_001792846.1 CDS Lcho_3827 NC_010524.1 4289367 4290602 D PFAM: cytochrome oxidase assembly; KEGG: mpt:Mpe_A3174 putative heme O oxygenase (cytochrome aa3-controlling) transmembrane protein; cytochrome oxidase assembly 4289367..4290602 Leptothrix cholodnii SP-6 6161891 YP_001792847.1 CDS Lcho_3828 NC_010524.1 4290599 4291516 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4290599..4291516 Leptothrix cholodnii SP-6 6161892 YP_001792848.1 CDS Lcho_3829 NC_010524.1 4291513 4292148 D PFAM: electron transport protein SCO1/SenC; KEGG: mpt:Mpe_A3172 putative lipoprotein; electron transport protein SCO1/SenC 4291513..4292148 Leptothrix cholodnii SP-6 6161893 YP_001792849.1 CDS Lcho_3830 NC_010524.1 4292155 4294053 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0181 ferric-enterobactin ABC transporter ATPase; ABC transporter-like protein complement(4292155..4294053) Leptothrix cholodnii SP-6 6161894 YP_001792850.1 CDS Lcho_3831 NC_010524.1 4294152 4294700 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_1153 OmpA/MotB; peptidoglycan-associated lipoprotein complement(4294152..4294700) Leptothrix cholodnii SP-6 6161431 YP_001792851.1 CDS Lcho_3832 NC_010524.1 4294846 4296504 R TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mpt:Mpe_A3384 putative apolipoprotein N-acyltransferase transmembrane; apolipoprotein N-acyltransferase complement(4294846..4296504) Leptothrix cholodnii SP-6 6161432 YP_001792852.1 CDS Lcho_3833 NC_010524.1 4296501 4297421 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: mpt:Mpe_A3385 transport protein; hypothetical protein complement(4296501..4297421) Leptothrix cholodnii SP-6 6161433 YP_001792853.1 CDS Lcho_3834 NC_010524.1 4297590 4298621 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mpt:Mpe_A3386 hypothetical protein; cobalamin synthesis protein P47K 4297590..4298621 Leptothrix cholodnii SP-6 6161434 YP_001792854.1 CDS Lcho_3835 NC_010524.1 4298949 4299437 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: aav:Aave_0808 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 4298949..4299437 Leptothrix cholodnii SP-6 6161435 YP_001792855.1 CDS Lcho_3836 NC_010524.1 4299495 4301231 D KEGG: mpt:Mpe_A3388 hypothetical protein; hypothetical protein 4299495..4301231 Leptothrix cholodnii SP-6 6161436 YP_001792856.1 CDS Lcho_3837 NC_010524.1 4301312 4301848 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4301312..4301848 Leptothrix cholodnii SP-6 6161437 YP_001792857.1 CDS hslU NC_010524.1 4301845 4303200 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4301845..4303200 Leptothrix cholodnii SP-6 6161953 YP_001792858.1 CDS Lcho_3839 NC_010524.1 4303224 4304012 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(4303224..4304012) Leptothrix cholodnii SP-6 6161954 YP_001792859.1 CDS Lcho_3840 NC_010524.1 4304083 4304685 R KEGG: mpt:Mpe_A3392 hypothetical protein; hypothetical protein complement(4304083..4304685) Leptothrix cholodnii SP-6 6161955 YP_001792860.1 CDS Lcho_3841 NC_010524.1 4304831 4305667 R KEGG: dar:Daro_0832 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D complement(4304831..4305667) Leptothrix cholodnii SP-6 6161956 YP_001792861.1 CDS Lcho_3842 NC_010524.1 4305683 4306678 R TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1391 NO3-/NO2-ABC transporter; nitrate ABC transporter inner membrane subunit complement(4305683..4306678) Leptothrix cholodnii SP-6 6161957 YP_001792862.1 CDS Lcho_3843 NC_010524.1 4306699 4307952 R KEGG: mpt:Mpe_A1392 NO3-/NO2-ABC transporter; NO3-/NO2-ABC transporter complement(4306699..4307952) Leptothrix cholodnii SP-6 6161958 YP_001792863.1 CDS Lcho_3844 NC_010524.1 4308382 4311672 D KEGG: mpt:Mpe_A0903 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 4308382..4311672 Leptothrix cholodnii SP-6 6161959 YP_001792864.1 CDS Lcho_3845 NC_010524.1 4311700 4312662 R PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A1376 methyl parathion hydrolase; beta-lactamase domain-containing protein complement(4311700..4312662) Leptothrix cholodnii SP-6 6162620 YP_001792865.1 CDS Lcho_3846 NC_010524.1 4312878 4313045 D KEGG: mpt:Mpe_A1438 hypothetical protein; hypothetical protein 4312878..4313045 Leptothrix cholodnii SP-6 6162621 YP_001792866.1 CDS Lcho_3847 NC_010524.1 4313157 4314854 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpt:Mpe_A1437 uncharacterized FAD-dependent dehydrogenase; FAD dependent oxidoreductase 4313157..4314854 Leptothrix cholodnii SP-6 6162622 YP_001792867.1 CDS Lcho_3848 NC_010524.1 4314882 4316267 R PFAM: protein of unknown function DUF88; KEGG: ajs:Ajs_1706 protein of unknown function DUF88; hypothetical protein complement(4314882..4316267) Leptothrix cholodnii SP-6 6162623 YP_001792868.1 CDS Lcho_3849 NC_010524.1 4316408 4317901 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: mpt:Mpe_A2604 signal transduction histidine kinase glucose-6-phosphate-like protein; histidine kinase 4316408..4317901 Leptothrix cholodnii SP-6 6162624 YP_001792869.1 CDS Lcho_3850 NC_010524.1 4317906 4318580 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mpt:Mpe_A2603 two-component response regulator; two component LuxR family transcriptional regulator 4317906..4318580 Leptothrix cholodnii SP-6 6162625 YP_001792870.1 CDS Lcho_3851 NC_010524.1 4318727 4319731 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: vei:Veis_4977 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 4318727..4319731 Leptothrix cholodnii SP-6 6162626 YP_001792871.1 CDS Lcho_3852 NC_010524.1 4319778 4320017 R hypothetical protein complement(4319778..4320017) Leptothrix cholodnii SP-6 6161205 YP_001792872.1 CDS Lcho_3853 NC_010524.1 4320088 4321839 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pna:Pnap_0633 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(4320088..4321839) Leptothrix cholodnii SP-6 6161206 YP_001792873.1 CDS Lcho_3854 NC_010524.1 4321916 4323103 D catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 4321916..4323103 Leptothrix cholodnii SP-6 6161207 YP_001792874.1 CDS Lcho_3855 NC_010524.1 4323192 4323584 R KEGG: bja:blr5152 hypothetical protein; hypothetical protein complement(4323192..4323584) Leptothrix cholodnii SP-6 6161208 YP_001792875.1 CDS Lcho_3856 NC_010524.1 4323680 4323982 R KEGG: pol:Bpro_2130 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(4323680..4323982) Leptothrix cholodnii SP-6 6161209 YP_001792876.1 CDS Lcho_3857 NC_010524.1 4324072 4324626 D PFAM: YaeQ family protein; KEGG: mfa:Mfla_0160 YaeQ; YaeQ family protein 4324072..4324626 Leptothrix cholodnii SP-6 6161210 YP_001792877.1 CDS prfC NC_010524.1 4324766 4326409 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4324766..4326409 Leptothrix cholodnii SP-6 6161211 YP_001792878.1 CDS Lcho_3859 NC_010524.1 4326423 4327595 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3678 L-lactate dehydrogenase (cytochrome); L-lactate dehydrogenase (cytochrome) complement(4326423..4327595) Leptothrix cholodnii SP-6 6161172 YP_001792879.1 CDS Lcho_3860 NC_010524.1 4327664 4328584 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo1015 probable transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4327664..4328584) Leptothrix cholodnii SP-6 6161173 YP_001792880.1 CDS rpsL NC_010524.1 4328818 4329195 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 4328818..4329195 Leptothrix cholodnii SP-6 6161174 YP_001792881.1 CDS Lcho_3862 NC_010524.1 4329358 4329828 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 4329358..4329828 Leptothrix cholodnii SP-6 6161175 YP_001792882.1 CDS Lcho_3863 NC_010524.1 4329913 4332015 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4329913..4332015 Leptothrix cholodnii SP-6 6161176 YP_001792883.1 CDS Lcho_3864 NC_010524.1 4332224 4333414 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4332224..4333414 Leptothrix cholodnii SP-6 6161177 YP_001792884.1 CDS rpsJ NC_010524.1 4333495 4333806 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 4333495..4333806 Leptothrix cholodnii SP-6 6161527 YP_001792885.1 CDS Lcho_3866 NC_010524.1 4334319 4338542 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(4334319..4338542) Leptothrix cholodnii SP-6 6161529 YP_001792886.1 CDS rpoB NC_010524.1 4338555 4342682 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(4338555..4342682) Leptothrix cholodnii SP-6 6161530 YP_001792887.1 CDS rplL NC_010524.1 4343023 4343397 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(4343023..4343397) Leptothrix cholodnii SP-6 6161531 YP_001792888.1 CDS rplJ NC_010524.1 4343431 4343979 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(4343431..4343979) Leptothrix cholodnii SP-6 6161532 YP_001792889.1 CDS Lcho_3870 NC_010524.1 4344259 4344972 R PFAM: ribosomal protein L1; KEGG: mpt:Mpe_A3454 50S ribosomal protein L1; 50S ribosomal protein L1 complement(4344259..4344972) Leptothrix cholodnii SP-6 6162490 YP_001792890.1 CDS Lcho_3871 NC_010524.1 4344974 4345405 R PFAM: ribosomal protein L11; KEGG: bte:BTH_I3080 ribosomal protein L11; 50S ribosomal protein L11 complement(4344974..4345405) Leptothrix cholodnii SP-6 6162491 YP_001792891.1 CDS Lcho_3872 NC_010524.1 4345559 4346125 R TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: mpt:Mpe_A3456 transcription antitermination protein NusG; NusG antitermination factor complement(4345559..4346125) Leptothrix cholodnii SP-6 6162492 YP_001792892.1 CDS secE NC_010524.1 4346156 4346539 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(4346156..4346539) Leptothrix cholodnii SP-6 6162493 YP_001792893.1 CDS Lcho_3874 NC_010524.1 4346754 4347944 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4346754..4347944) Leptothrix cholodnii SP-6 6162495 YP_001792894.1 CDS Lcho_3875 NC_010524.1 4348471 4349217 R TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bbr:BB0210 uracil-DNA glycosylase; uracil-DNA glycosylase complement(4348471..4349217) Leptothrix cholodnii SP-6 6161045 YP_001792895.1 CDS Lcho_3876 NC_010524.1 4349225 4350013 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: mpt:Mpe_A3460 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase complement(4349225..4350013) Leptothrix cholodnii SP-6 6163446 YP_001792896.1 CDS trpD NC_010524.1 4350024 4351061 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(4350024..4351061) Leptothrix cholodnii SP-6 6163447 YP_001792897.1 CDS Lcho_3878 NC_010524.1 4351105 4351671 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mpt:Mpe_A3462 putative panthranilate synthase component II (glutamine amido-transferase) protein; glutamine amidotransferase of anthranilate synthase complement(4351105..4351671) Leptothrix cholodnii SP-6 6163448 YP_001792898.1 CDS Lcho_3879 NC_010524.1 4351966 4353159 D PFAM: type II secretion system protein; KEGG: tbd:Tbd_1294 type II secretion system protein F; type II secretion system protein 4351966..4353159 Leptothrix cholodnii SP-6 6163449 YP_001792899.1 CDS Lcho_3880 NC_010524.1 4353319 4355022 D PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: tbd:Tbd_1295 type II secretion system protein; type II secretion system protein E 4353319..4355022 Leptothrix cholodnii SP-6 6163450 YP_001792900.1 CDS Lcho_3881 NC_010524.1 4355003 4356361 D KEGG: tbd:Tbd_1296 hypothetical protein; hypothetical protein 4355003..4356361 Leptothrix cholodnii SP-6 6163451 YP_001792901.1 CDS Lcho_3882 NC_010524.1 4356358 4356897 D KEGG: ppf:Pput_2291 hypothetical protein; hypothetical protein 4356358..4356897 Leptothrix cholodnii SP-6 6163452 YP_001792902.1 CDS Lcho_3883 NC_010524.1 4356894 4357514 D KEGG: tbd:Tbd_1299 probable prolin-rich transmembrane protein; hypothetical protein 4356894..4357514 Leptothrix cholodnii SP-6 6162333 YP_001792903.1 CDS Lcho_3884 NC_010524.1 4357511 4359793 D PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: tbd:Tbd_1300 type II secretion system protein D; type II and III secretion system protein 4357511..4359793 Leptothrix cholodnii SP-6 6162334 YP_001792904.1 CDS Lcho_3885 NC_010524.1 4359790 4360275 D KEGG: mfa:Mfla_2413 methylation; hypothetical protein 4359790..4360275 Leptothrix cholodnii SP-6 6162335 YP_001792905.1 CDS Lcho_3886 NC_010524.1 4360281 4360649 D PFAM: type II secretion system protein G; KEGG: tbd:Tbd_1441 type II secretion system protein G; type II secretion system protein G 4360281..4360649 Leptothrix cholodnii SP-6 6162336 YP_001792906.1 CDS Lcho_3887 NC_010524.1 4360643 4361437 D KEGG: ppu:PP_3475 hypothetical protein; hypothetical protein 4360643..4361437 Leptothrix cholodnii SP-6 6162337 YP_001792907.1 CDS Lcho_3888 NC_010524.1 4361471 4362481 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pfo:Pfl_1980 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(4361471..4362481) Leptothrix cholodnii SP-6 6162338 YP_001792908.1 CDS Lcho_3889 NC_010524.1 4362478 4364103 R PFAM: Extracellular ligand-binding receptor; KEGG: pfo:Pfl_1979 cytochrome c, putative; extracellular ligand-binding receptor complement(4362478..4364103) Leptothrix cholodnii SP-6 6162339 YP_001792909.1 CDS Lcho_3890 NC_010524.1 4364113 4364799 R PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2852 SCO1/SenC family protein; electron transport protein SCO1/SenC complement(4364113..4364799) Leptothrix cholodnii SP-6 6162049 YP_001792910.1 CDS Lcho_3891 NC_010524.1 4364835 4365503 R PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2853 Sco1/SenC family protein; electron transport protein SCO1/SenC complement(4364835..4365503) Leptothrix cholodnii SP-6 6162050 YP_001792911.1 CDS Lcho_3892 NC_010524.1 4365500 4367482 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1 heme region; KEGG: pfo:Pfl_1976 hypothetical protein; hypothetical protein complement(4365500..4367482) Leptothrix cholodnii SP-6 6162051 YP_001792912.1 CDS Lcho_3893 NC_010524.1 4367572 4373622 R KEGG: pfo:Pfl_1975 hypothetical protein; hypothetical protein complement(4367572..4373622) Leptothrix cholodnii SP-6 6162052 YP_001792913.1 CDS Lcho_3894 NC_010524.1 4374212 4375540 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nmu:Nmul_A0008 periplasmic sensor signal transduction histidine kinase; histidine kinase 4374212..4375540 Leptothrix cholodnii SP-6 6162053 YP_001792914.1 CDS Lcho_3895 NC_010524.1 4375550 4376098 D PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: mfa:Mfla_2202 response regulator receiver domain protein (CheY-like); two component Fis family transcriptional regulator 4375550..4376098 Leptothrix cholodnii SP-6 6162054 YP_001792915.1 CDS Lcho_3896 NC_010524.1 4376123 4377610 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(4376123..4377610) Leptothrix cholodnii SP-6 6162055 YP_001792916.1 CDS Lcho_3897 NC_010524.1 4377610 4379097 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(4377610..4379097) Leptothrix cholodnii SP-6 6161928 YP_001792917.1 CDS Lcho_3898 NC_010524.1 4379431 4380096 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aav:Aave_0440 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(4379431..4380096) Leptothrix cholodnii SP-6 6161929 YP_001792918.1 CDS Lcho_3899 NC_010524.1 4380108 4380794 R PFAM: ribulose-phosphate 3-epimerase; KEGG: ajs:Ajs_0361 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(4380108..4380794) Leptothrix cholodnii SP-6 6161930 YP_001792919.1 CDS Lcho_3900 NC_010524.1 4380860 4381246 D PFAM: ApaG domain protein; KEGG: rso:RSc2878 ApaG; ApaG domain-containing protein 4380860..4381246 Leptothrix cholodnii SP-6 6161931 YP_001792920.1 CDS Lcho_3901 NC_010524.1 4381243 4383327 D KEGG: mpt:Mpe_A3469 putative site-specific recombinase transmembrane protein; putative site-specific recombinase transmembrane protein 4381243..4383327 Leptothrix cholodnii SP-6 6161932 YP_001792921.1 CDS Lcho_3902 NC_010524.1 4383458 4384753 D PFAM: MltA domain protein; 3D domain protein; KEGG: mpt:Mpe_A3470 membrane-bound lytic murein transglycosylase A; MltA domain-containing protein 4383458..4384753 Leptothrix cholodnii SP-6 6161933 YP_001792922.1 CDS Lcho_3903 NC_010524.1 4384754 4385866 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: acr:Acry_0567 diguanylate cyclase; diguanylate cyclase complement(4384754..4385866) Leptothrix cholodnii SP-6 6161790 YP_001792923.1 CDS Lcho_3904 NC_010524.1 4385913 4386473 R PFAM: regulatory protein AsnC/Lrp family; KEGG: mpt:Mpe_A3501 transcriptional regulator-like protein protein; AsnC family transcriptional regulator complement(4385913..4386473) Leptothrix cholodnii SP-6 6161791 YP_001792924.1 CDS Lcho_3905 NC_010524.1 4386589 4390146 D Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 4386589..4390146 Leptothrix cholodnii SP-6 6161792 YP_001792925.1 CDS Lcho_3906 NC_010524.1 4390165 4390434 R TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: dac:Daci_4661 translation initiation factor IF-1; translation initiation factor IF-1 complement(4390165..4390434) Leptothrix cholodnii SP-6 6161793 YP_001792926.1 CDS Lcho_3907 NC_010524.1 4390661 4390921 R hypothetical protein complement(4390661..4390921) Leptothrix cholodnii SP-6 6161794 YP_001792927.1 CDS Lcho_3908 NC_010524.1 4391161 4391493 R KEGG: pol:Bpro_3230 hypothetical protein; hypothetical protein complement(4391161..4391493) Leptothrix cholodnii SP-6 6161795 YP_001792928.1 CDS Lcho_3909 NC_010524.1 4391493 4392440 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(4391493..4392440) Leptothrix cholodnii SP-6 6161796 YP_001792929.1 CDS Lcho_3910 NC_010524.1 4392489 4393670 R PFAM: aminoglycoside phosphotransferase; KEGG: mpt:Mpe_A0201 hypothetical protein; aminoglycoside phosphotransferase complement(4392489..4393670) Leptothrix cholodnii SP-6 6161783 YP_001792930.1 CDS Lcho_3911 NC_010524.1 4393722 4396313 D PFAM: Organic solvent tolerance protein; KEGG: mpt:Mpe_A0202 putative organic solvent tolerance transmembrane protein; organic solvent tolerance protein 4393722..4396313 Leptothrix cholodnii SP-6 6161784 YP_001792931.1 CDS Lcho_3912 NC_010524.1 4396310 4397704 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: mpt:Mpe_A0203 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein 4396310..4397704 Leptothrix cholodnii SP-6 6161785 YP_001792932.1 CDS ksgA NC_010524.1 4397712 4398521 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 4397712..4398521 Leptothrix cholodnii SP-6 6161786 YP_001792933.1 CDS Lcho_3914 NC_010524.1 4398782 4399177 R KEGG: mpt:Mpe_A0205 hypothetical protein; hypothetical protein complement(4398782..4399177) Leptothrix cholodnii SP-6 6161787 YP_001792934.1 CDS Lcho_3915 NC_010524.1 4399212 4399625 R PFAM: guanine-specific ribonuclease N1 and T1; KEGG: vei:Veis_4808 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease N1 and T1 complement(4399212..4399625) Leptothrix cholodnii SP-6 6161788 YP_001792935.1 CDS Lcho_3916 NC_010524.1 4399939 4402257 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(4399939..4402257) Leptothrix cholodnii SP-6 6161789 YP_001792936.1 CDS Lcho_3917 NC_010524.1 4402478 4404610 D KEGG: mpt:Mpe_A0208 two component sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 4402478..4404610 Leptothrix cholodnii SP-6 6161714 YP_001792937.1 CDS Lcho_3918 NC_010524.1 4404615 4405262 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: aav:Aave_4653 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4404615..4405262 Leptothrix cholodnii SP-6 6161715 YP_001792938.1 CDS Lcho_3919 NC_010524.1 4405362 4406357 D KEGG: mpt:Mpe_A0210 thiamine-phosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 4405362..4406357 Leptothrix cholodnii SP-6 6161716 YP_001792939.1 CDS Lcho_3920 NC_010524.1 4406354 4406911 D PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 4406354..4406911 Leptothrix cholodnii SP-6 6161717 YP_001792940.1 CDS Lcho_3921 NC_010524.1 4406925 4407434 D PFAM: CinA domain protein; KEGG: ajs:Ajs_0354 CinA domain protein; CinA domain-containing protein 4406925..4407434 Leptothrix cholodnii SP-6 6161718 YP_001792941.1 CDS Lcho_3922 NC_010524.1 4407540 4407938 R PFAM: ribosomal protein L17; KEGG: pna:Pnap_0346 ribosomal protein L17; 50S ribosomal protein L17 complement(4407540..4407938) Leptothrix cholodnii SP-6 6161719 YP_001792942.1 CDS Lcho_3923 NC_010524.1 4408042 4409028 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(4408042..4409028) Leptothrix cholodnii SP-6 6161720 YP_001792943.1 CDS rpsD NC_010524.1 4409165 4409788 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(4409165..4409788) Leptothrix cholodnii SP-6 6161662 YP_001792944.1 CDS Lcho_3925 NC_010524.1 4410007 4410411 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(4410007..4410411) Leptothrix cholodnii SP-6 6161663 YP_001792945.1 CDS rpsM NC_010524.1 4410442 4410807 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(4410442..4410807) Leptothrix cholodnii SP-6 6161664 YP_001792946.1 CDS rpmJ NC_010524.1 4410843 4410956 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(4410843..4410956) Leptothrix cholodnii SP-6 6161665 YP_001792947.1 CDS infA NC_010524.1 4411013 4411231 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(4411013..4411231) Leptothrix cholodnii SP-6 6161666 YP_001792948.1 CDS secY NC_010524.1 4411256 4412566 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(4411256..4412566) Leptothrix cholodnii SP-6 6161667 YP_001792949.1 CDS rplO NC_010524.1 4412593 4413027 R late assembly protein; 50S ribosomal protein L15 complement(4412593..4413027) Leptothrix cholodnii SP-6 6161668 YP_001792950.1 CDS rpmD NC_010524.1 4413053 4413235 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(4413053..4413235) Leptothrix cholodnii SP-6 6163725 YP_001792951.1 CDS rpsE NC_010524.1 4413252 4413770 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(4413252..4413770) Leptothrix cholodnii SP-6 6163726 YP_001792952.1 CDS rplR NC_010524.1 4413800 4414165 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(4413800..4414165) Leptothrix cholodnii SP-6 6163727 YP_001792953.1 CDS rplF NC_010524.1 4414177 4414710 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(4414177..4414710) Leptothrix cholodnii SP-6 6163728 YP_001792954.1 CDS Lcho_3935 NC_010524.1 4414727 4415122 R PFAM: ribosomal protein S8; KEGG: pol:Bpro_0489 ribosomal protein S8; 30S ribosomal protein S8 complement(4414727..4415122) Leptothrix cholodnii SP-6 6163729 YP_001792955.1 CDS rpsN NC_010524.1 4415159 4415464 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(4415159..4415464) Leptothrix cholodnii SP-6 6163730 YP_001792956.1 CDS Lcho_3937 NC_010524.1 4415473 4416024 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(4415473..4416024) Leptothrix cholodnii SP-6 6163731 YP_001792957.1 CDS rplX NC_010524.1 4416038 4416355 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(4416038..4416355) Leptothrix cholodnii SP-6 6163583 YP_001792958.1 CDS rplN NC_010524.1 4416377 4416745 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(4416377..4416745) Leptothrix cholodnii SP-6 6163584 YP_001792959.1 CDS Lcho_3940 NC_010524.1 4416977 4418272 R TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: mpt:Mpe_A0173 putative glutamate--cysteine ligase; glutamate--cysteine ligase complement(4416977..4418272) Leptothrix cholodnii SP-6 6163585 YP_001792960.1 CDS Lcho_3941 NC_010524.1 4418402 4419916 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_0184 ammonium transporter; ammonium transporter complement(4418402..4419916) Leptothrix cholodnii SP-6 6163586 YP_001792961.1 CDS Lcho_3942 NC_010524.1 4419939 4420277 R PFAM: nitrogen regulatory protein P-II; KEGG: mpt:Mpe_A0171 nitrogen regulatory protein P-II-2; nitrogen regulatory protein P-II complement(4419939..4420277) Leptothrix cholodnii SP-6 6163587 YP_001792962.1 CDS Lcho_3943 NC_010524.1 4420559 4422073 D KEGG: mpt:Mpe_A0170 putative MG(2+) chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4420559..4422073 Leptothrix cholodnii SP-6 6163588 YP_001792963.1 CDS Lcho_3944 NC_010524.1 4422139 4422882 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 4422139..4422882 Leptothrix cholodnii SP-6 6163589 YP_001792964.1 CDS Lcho_3945 NC_010524.1 4423121 4424995 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 4423121..4424995 Leptothrix cholodnii SP-6 6162931 YP_001792965.1 CDS Lcho_3946 NC_010524.1 4425078 4425320 R hypothetical protein complement(4425078..4425320) Leptothrix cholodnii SP-6 6162932 YP_001792966.1 CDS Lcho_3947 NC_010524.1 4425458 4426423 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0076 transcriptional regulator, LysR family; LysR family transcriptional regulator 4425458..4426423 Leptothrix cholodnii SP-6 6162933 YP_001792967.1 CDS Lcho_3948 NC_010524.1 4426402 4428510 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: fre:Franean1_5550 prolyl oligopeptidase; prolyl oligopeptidase complement(4426402..4428510) Leptothrix cholodnii SP-6 6162934 YP_001792968.1 CDS Lcho_3949 NC_010524.1 4428507 4428989 R PFAM: protein of unknown function UPF0054; KEGG: mpt:Mpe_A3240 hypothetical protein; hypothetical protein complement(4428507..4428989) Leptothrix cholodnii SP-6 6162935 YP_001792969.1 CDS Lcho_3950 NC_010524.1 4429003 4430127 R PFAM: PhoH family protein; KEGG: mpt:Mpe_A3239 putative PhoH-like protein; PhoH family protein complement(4429003..4430127) Leptothrix cholodnii SP-6 6162936 YP_001792970.1 CDS Lcho_3951 NC_010524.1 4430271 4432148 D PFAM: ATP-binding region ATPase domain protein; KEGG: mpt:Mpe_A3238 signal transduction histidine kinase-like protein; histidine kinase 4430271..4432148 Leptothrix cholodnii SP-6 6162937 YP_001792971.1 CDS Lcho_3952 NC_010524.1 4432276 4432944 D PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: mpt:Mpe_A3237 response regulator; two component LuxR family transcriptional regulator 4432276..4432944 Leptothrix cholodnii SP-6 6162568 YP_001792972.1 CDS ruvA NC_010524.1 4433060 4433635 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 4433060..4433635 Leptothrix cholodnii SP-6 6162569 YP_001792973.1 CDS ruvB NC_010524.1 4433720 4434811 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 4433720..4434811 Leptothrix cholodnii SP-6 6162570 YP_001792974.1 CDS Lcho_3955 NC_010524.1 4434837 4435559 R PFAM: Phosphoglycerate mutase; KEGG: mpt:Mpe_A0330 putative phosphoglycerate mutase 2 protein; phosphoglycerate mutase complement(4434837..4435559) Leptothrix cholodnii SP-6 6162571 YP_001792975.1 CDS Lcho_3956 NC_010524.1 4435573 4435908 R PFAM: Domain of unknown function DUF1840; KEGG: mpt:Mpe_A0332 hypothetical protein; hypothetical protein complement(4435573..4435908) Leptothrix cholodnii SP-6 6162572 YP_001792976.1 CDS Lcho_3957 NC_010524.1 4436031 4436756 R PFAM: phospholipid/glycerol acyltransferase; KEGG: mpt:Mpe_A0710 putative 1-acylglycerol-3-phosphate O-acyltransferase; phospholipid/glycerol acyltransferase complement(4436031..4436756) Leptothrix cholodnii SP-6 6162573 YP_001792977.1 CDS Lcho_3958 NC_010524.1 4436753 4438078 R KEGG: mpt:Mpe_A0709 putative dihydroorotase-like protein; putative dihydroorotase-like protein complement(4436753..4438078) Leptothrix cholodnii SP-6 6162574 YP_001792978.1 CDS pyrB NC_010524.1 4438158 4439120 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(4438158..4439120) Leptothrix cholodnii SP-6 6162384 YP_001792979.1 CDS Lcho_3960 NC_010524.1 4439120 4439629 R PFAM: phosphoribosyltransferase; KEGG: mpt:Mpe_A0707 bifunctional regulator/uracil phosphoribosyltransferase; phosphoribosyltransferase complement(4439120..4439629) Leptothrix cholodnii SP-6 6162385 YP_001792980.1 CDS Lcho_3961 NC_010524.1 4439626 4440075 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(4439626..4440075) Leptothrix cholodnii SP-6 6162386 YP_001792981.1 CDS Lcho_3962 NC_010524.1 4440072 4440653 R PFAM: protein of unknown function DUF179; KEGG: mpt:Mpe_A0705 hypothetical protein; hypothetical protein complement(4440072..4440653) Leptothrix cholodnii SP-6 6162387 YP_001792982.1 CDS Lcho_3963 NC_010524.1 4440691 4442226 D PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: mpt:Mpe_A0704 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 4440691..4442226 Leptothrix cholodnii SP-6 6162388 YP_001792983.1 CDS Lcho_3964 NC_010524.1 4442204 4445311 R PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A2137 putative transporter lipoprotein transmembrane; acriflavin resistance protein complement(4442204..4445311) Leptothrix cholodnii SP-6 6162389 YP_001792984.1 CDS Lcho_3965 NC_010524.1 4445308 4446396 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A2136 putative transporter lipoprotein transmembrane; RND family efflux transporter MFP subunit complement(4445308..4446396) Leptothrix cholodnii SP-6 6162390 YP_001792985.1 CDS Lcho_3966 NC_010524.1 4446626 4447663 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1673 diguanylate cyclase; diguanylate cyclase complement(4446626..4447663) Leptothrix cholodnii SP-6 6162377 YP_001792986.1 CDS Lcho_3967 NC_010524.1 4447700 4454944 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aav:Aave_0905 CheA signal transduction histidine kinase; CheA signal transduction histidine kinase complement(4447700..4454944) Leptothrix cholodnii SP-6 6162378 YP_001792987.1 CDS Lcho_3968 NC_010524.1 4454974 4457307 R PFAM: chemotaxis sensory transducer; KEGG: mpt:Mpe_A3187 twitching motility protein; methyl-accepting chemotaxis sensory transducer complement(4454974..4457307) Leptothrix cholodnii SP-6 6162379 YP_001792988.1 CDS Lcho_3969 NC_010524.1 4457362 4457892 R PFAM: CheW domain protein; KEGG: mpt:Mpe_A3188 twitching motility signal transduction protein; CheW protein complement(4457362..4457892) Leptothrix cholodnii SP-6 6162380 YP_001792989.1 CDS Lcho_3970 NC_010524.1 4457908 4458273 R PFAM: response regulator receiver; KEGG: mpt:Mpe_A3189 twitching motility protein; response regulator receiver protein complement(4457908..4458273) Leptothrix cholodnii SP-6 6162381 YP_001792990.1 CDS Lcho_3971 NC_010524.1 4458353 4458790 R PFAM: response regulator receiver; KEGG: mpt:Mpe_A3190 twitching motility, CheY-like protein; response regulator receiver protein complement(4458353..4458790) Leptothrix cholodnii SP-6 6162382 YP_001792991.1 CDS Lcho_3972 NC_010524.1 4458812 4458964 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: mpt:Mpe_A3191 rubredoxin; rubredoxin-type Fe(Cys)4 protein complement(4458812..4458964) Leptothrix cholodnii SP-6 6162383 YP_001792992.1 CDS Lcho_3973 NC_010524.1 4459178 4460110 D PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mpt:Mpe_A3192 hydroxymethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 4459178..4460110 Leptothrix cholodnii SP-6 6161960 YP_001792993.1 CDS Lcho_3974 NC_010524.1 4460151 4461464 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 4460151..4461464 Leptothrix cholodnii SP-6 6161961 YP_001792994.1 CDS Lcho_3975 NC_010524.1 4461513 4462388 D PFAM: Aldose 1-epimerase; KEGG: mpt:Mpe_A3194 aldose 1-epimerase; aldose 1-epimerase 4461513..4462388 Leptothrix cholodnii SP-6 6161962 YP_001792995.1 CDS Lcho_3976 NC_010524.1 4462390 4463478 R PFAM: phosphofructokinase; KEGG: dac:Daci_5255 6-phosphofructokinase; 6-phosphofructokinase complement(4462390..4463478) Leptothrix cholodnii SP-6 6161963 YP_001792996.1 CDS Lcho_3977 NC_010524.1 4463534 4464976 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mpt:Mpe_A3197 putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase transmembrane protein; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4463534..4464976 Leptothrix cholodnii SP-6 6161964 YP_001792997.1 CDS Lcho_3978 NC_010524.1 4464979 4465602 D PFAM: protein of unknown function UPF0227; KEGG: pna:Pnap_3401 protein of unknown function UPF0227; hypothetical protein 4464979..4465602 Leptothrix cholodnii SP-6 6161965 YP_001792998.1 CDS Lcho_3979 NC_010524.1 4465655 4466395 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_4047 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 4465655..4466395 Leptothrix cholodnii SP-6 6161966 YP_001792999.1 CDS Lcho_3980 NC_010524.1 4466435 4468552 D PFAM: ribonuclease II; KEGG: mpt:Mpe_A3199 hypothetical protein; ribonuclease II 4466435..4468552 Leptothrix cholodnii SP-6 6161502 YP_001793000.1 CDS Lcho_3981 NC_010524.1 4468567 4469457 D TIGRFAM: TonB family protein; KEGG: mpt:Mpe_A3200 periplasmic protein/biopolymer transport; TonB family protein 4468567..4469457 Leptothrix cholodnii SP-6 6161503 YP_001793001.1 CDS Lcho_3982 NC_010524.1 4469483 4470286 D TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: mpt:Mpe_A3202 putative peptidoglycan biosynthesis-related protein; monofunctional biosynthetic peptidoglycan transglycosylase 4469483..4470286 Leptothrix cholodnii SP-6 6161504 YP_001793002.1 CDS Lcho_3983 NC_010524.1 4470331 4470957 D KEGG: mpt:Mpe_A3203 hypothetical protein; hypothetical protein 4470331..4470957 Leptothrix cholodnii SP-6 6161505 YP_001793003.1 CDS Lcho_3984 NC_010524.1 4470954 4471541 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A3204 thioredoxin family protein, putative; alkyl hydroperoxide reductase 4470954..4471541 Leptothrix cholodnii SP-6 6161506 YP_001793004.1 CDS Lcho_3985 NC_010524.1 4471907 4472362 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: mpt:Mpe_A3206 putative biotin carboxyl carrier protein of acetyl-CoA carboxylase (BccP); acetyl-CoA carboxylase, biotin carboxyl carrier protein 4471907..4472362 Leptothrix cholodnii SP-6 6161507 YP_001793005.1 CDS Lcho_3986 NC_010524.1 4472373 4473728 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: mpt:Mpe_A3207 putative biotin carboxylase protein; acetyl-CoA carboxylase, biotin carboxylase 4472373..4473728 Leptothrix cholodnii SP-6 6161508 YP_001793006.1 CDS prmA NC_010524.1 4473752 4474657 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 4473752..4474657 Leptothrix cholodnii SP-6 6159692 YP_001793007.1 CDS Lcho_3988 NC_010524.1 4474679 4476004 D TIGRFAM: MJ0042 family finger-like protein; KEGG: mpt:Mpe_A3209 hypothetical protein; Zinc finger-domain-containing protein 4474679..4476004 Leptothrix cholodnii SP-6 6159693 YP_001793008.1 CDS Lcho_3989 NC_010524.1 4476082 4476588 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A3433 AhpC/TSA-family protein; redoxin domain-containing protein complement(4476082..4476588) Leptothrix cholodnii SP-6 6159694 YP_001793009.1 CDS rpsQ NC_010524.1 4476729 4477025 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(4476729..4477025) Leptothrix cholodnii SP-6 6159695 YP_001793010.1 CDS Lcho_3991 NC_010524.1 4477025 4477222 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(4477025..4477222) Leptothrix cholodnii SP-6 6159696 YP_001793011.1 CDS rplP NC_010524.1 4477237 4477653 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(4477237..4477653) Leptothrix cholodnii SP-6 6159697 YP_001793012.1 CDS rpsC NC_010524.1 4477657 4478514 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(4477657..4478514) Leptothrix cholodnii SP-6 6159698 YP_001793013.1 CDS Lcho_3994 NC_010524.1 4478533 4478862 R TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: pna:Pnap_0208 ribosomal protein L22; 50S ribosomal protein L22 complement(4478533..4478862) Leptothrix cholodnii SP-6 6160823 YP_001793014.1 CDS rpsS NC_010524.1 4478875 4479150 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(4478875..4479150) Leptothrix cholodnii SP-6 6160824 YP_001793015.1 CDS rplB NC_010524.1 4479169 4479993 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(4479169..4479993) Leptothrix cholodnii SP-6 6160825 YP_001793016.1 CDS rplW NC_010524.1 4479993 4480319 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(4479993..4480319) Leptothrix cholodnii SP-6 6160826 YP_001793017.1 CDS rplD NC_010524.1 4480316 4480936 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(4480316..4480936) Leptothrix cholodnii SP-6 6160827 YP_001793018.1 CDS rplC NC_010524.1 4480936 4481616 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(4480936..4481616) Leptothrix cholodnii SP-6 6160828 YP_001793019.1 CDS Lcho_4000 NC_010524.1 4482192 4482914 R PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: mpt:Mpe_A0275 putative two component response regulator transcription regulator protein; two component Fis family transcriptional regulator complement(4482192..4482914) Leptothrix cholodnii SP-6 6161403 YP_001793020.1 CDS Lcho_4001 NC_010524.1 4482922 4485246 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A0274 putative two component sensor histidine kinase transcription regulator protein; histidine kinase complement(4482922..4485246) Leptothrix cholodnii SP-6 6161404 YP_001793021.1 CDS Lcho_4002 NC_010524.1 4485274 4485843 R KEGG: mpt:Mpe_A0273 hypothetical protein; hypothetical protein complement(4485274..4485843) Leptothrix cholodnii SP-6 6161405 YP_001793022.1 CDS Lcho_4003 NC_010524.1 4486009 4487370 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: mpt:Mpe_A0272 Sun protein; sun protein complement(4486009..4487370) Leptothrix cholodnii SP-6 6160514 YP_001793023.1 CDS Lcho_4004 NC_010524.1 4487398 4488327 R hypothetical protein complement(4487398..4488327) Leptothrix cholodnii SP-6 6160515 YP_001793024.1 CDS Lcho_4005 NC_010524.1 4488468 4489028 R PFAM: LemA family protein; KEGG: pna:Pnap_3638 LemA family protein; LemA family protein complement(4488468..4489028) Leptothrix cholodnii SP-6 6160516 YP_001793025.1 CDS Lcho_4006 NC_010524.1 4489059 4489766 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bbr:BB0421 hypothetical protein; exsB protein complement(4489059..4489766) Leptothrix cholodnii SP-6 6160517 YP_001793026.1 CDS proA NC_010524.1 4489783 4491102 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(4489783..4491102) Leptothrix cholodnii SP-6 6160518 YP_001793027.1 CDS Lcho_4008 NC_010524.1 4491109 4492149 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: reh:H16_B0226 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(4491109..4492149) Leptothrix cholodnii SP-6 6160519 YP_001793028.1 CDS Lcho_4009 NC_010524.1 4492286 4492804 D KEGG: vei:Veis_1320 hypothetical protein; hypothetical protein 4492286..4492804 Leptothrix cholodnii SP-6 6160520 YP_001793029.1 CDS Lcho_4010 NC_010524.1 4492859 4494427 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: mpt:Mpe_A1067 putative ubiquinone biosynthesis protein UbiB; 2-polyprenylphenol 6-hydroxylase 4492859..4494427 Leptothrix cholodnii SP-6 6163421 YP_001793030.1 CDS Lcho_4011 NC_010524.1 4494546 4494872 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: rfr:Rfer_1295 hypothetical protein; FmdB family regulatory protein 4494546..4494872 Leptothrix cholodnii SP-6 6163422 YP_001793031.1 CDS Lcho_4012 NC_010524.1 4494916 4495575 D PFAM: protein of unknown function DUF502; KEGG: mpt:Mpe_A1069 putatives membrane protein; hypothetical protein 4494916..4495575 Leptothrix cholodnii SP-6 6163423 YP_001793032.1 CDS Lcho_4013 NC_010524.1 4495669 4497465 D TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mpt:Mpe_A1070 putative aspartyl-tRNA synthetase protein; aspartyl-tRNA synthetase 4495669..4497465 Leptothrix cholodnii SP-6 6163424 YP_001793033.1 CDS Lcho_4014 NC_010524.1 4497629 4498549 D PFAM: UbiA prenyltransferase; KEGG: azo:azo3613 1,4-dihydroxy-2-naphthoate octaprenyltransferase; UbiA prenyltransferase 4497629..4498549 Leptothrix cholodnii SP-6 6163425 YP_001793034.1 CDS Lcho_4015 NC_010524.1 4498584 4499075 D PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1071 putative dATP pyrophosphohydrolase; NUDIX hydrolase 4498584..4499075 Leptothrix cholodnii SP-6 6163426 YP_001793035.1 CDS Lcho_4016 NC_010524.1 4499072 4499902 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpt:Mpe_A1072 hypothetical protein; endonuclease/exonuclease/phosphatase 4499072..4499902 Leptothrix cholodnii SP-6 6163427 YP_001793036.1 CDS Lcho_4017 NC_010524.1 4499902 4501257 D PFAM: phospholipase D/Transphosphatidylase; KEGG: mpt:Mpe_A1073 phospholipase D/transphosphatidylase protein; phospholipase D/transphosphatidylase 4499902..4501257 Leptothrix cholodnii SP-6 6163045 YP_001793037.1 CDS Lcho_4018 NC_010524.1 4501347 4502222 R putative metalloprotease; heat shock protein HtpX complement(4501347..4502222) Leptothrix cholodnii SP-6 6163046 YP_001793038.1 CDS Lcho_4019 NC_010524.1 4502417 4503076 R KEGG: pna:Pnap_3576 hypothetical protein; hypothetical protein complement(4502417..4503076) Leptothrix cholodnii SP-6 6163047 YP_001793039.1 CDS Lcho_4020 NC_010524.1 4503210 4504244 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(4503210..4504244) Leptothrix cholodnii SP-6 6163048 YP_001793040.1 CDS Lcho_4021 NC_010524.1 4504287 4505021 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0446 putative polar amino acid transport system ATP-binding protein; ABC transporter-like protein complement(4504287..4505021) Leptothrix cholodnii SP-6 6163049 YP_001793041.1 CDS Lcho_4022 NC_010524.1 4505034 4505699 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A0445 amino acid permease; polar amino acid ABC transporter inner membrane subunit complement(4505034..4505699) Leptothrix cholodnii SP-6 6163050 YP_001793042.1 CDS Lcho_4023 NC_010524.1 4505696 4506439 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A0444 putative ABC transporter protein, putative glutamate/aspartate transmembrane subunit; polar amino acid ABC transporter inner membrane subunit complement(4505696..4506439) Leptothrix cholodnii SP-6 6163051 YP_001793043.1 CDS Lcho_4024 NC_010524.1 4506505 4507401 R PFAM: extracellular solute-binding protein family 3; KEGG: aav:Aave_4073 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(4506505..4507401) Leptothrix cholodnii SP-6 6161694 YP_001793044.1 CDS Lcho_4025 NC_010524.1 4507599 4508549 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A0442 putative transcription regulator protein; LysR family transcriptional regulator complement(4507599..4508549) Leptothrix cholodnii SP-6 6161695 YP_001793045.1 CDS Lcho_4026 NC_010524.1 4508571 4510430 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0439 putative composite ATP-binding transmembrane ABC transporter protein; ABC transporter-like protein complement(4508571..4510430) Leptothrix cholodnii SP-6 6161696 YP_001793046.1 CDS Lcho_4027 NC_010524.1 4510466 4510933 D PFAM: thioesterase superfamily protein; KEGG: mpt:Mpe_A0438 acyl-CoA hydrolase-like protein; thioesterase superfamily protein 4510466..4510933 Leptothrix cholodnii SP-6 6161697 YP_001793047.1 CDS Lcho_4028 NC_010524.1 4510922 4511764 R KEGG: bch:Bcen2424_0149 hypothetical protein; hypothetical protein complement(4510922..4511764) Leptothrix cholodnii SP-6 6161698 YP_001793048.1 CDS Lcho_4029 NC_010524.1 4511879 4512643 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rso:RSc0476 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(4511879..4512643) Leptothrix cholodnii SP-6 6161699 YP_001793049.1 CDS Lcho_4030 NC_010524.1 4512743 4513942 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(4512743..4513942) Leptothrix cholodnii SP-6 6161700 YP_001793050.1 CDS Lcho_4031 NC_010524.1 4513957 4516362 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mpt:Mpe_A0417 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase; 3-hydroxyacyl-CoA dehydrogenase complement(4513957..4516362) Leptothrix cholodnii SP-6 6164081 YP_001793051.1 CDS Lcho_4032 NC_010524.1 4516404 4518194 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mpt:Mpe_A0419 putative acyl-CoA dehydrogenase oxidoreductase protein; acyl-CoA dehydrogenase domain-containing protein complement(4516404..4518194) Leptothrix cholodnii SP-6 6164082 YP_001793052.1 CDS Lcho_4033 NC_010524.1 4518275 4518934 R PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A0420 TetR family regulatory protein; TetR family transcriptional regulator complement(4518275..4518934) Leptothrix cholodnii SP-6 6164083 YP_001793053.1 CDS Lcho_4034 NC_010524.1 4519120 4519677 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpt:Mpe_A0423 hypothetical protein; HNH endonuclease 4519120..4519677 Leptothrix cholodnii SP-6 6164084 YP_001793054.1 CDS Lcho_4035 NC_010524.1 4519804 4520283 D PFAM: 17 kDa surface antigen; KEGG: mpt:Mpe_A0424 outer membrane lipoprotein; 17 kDa surface antigen 4519804..4520283 Leptothrix cholodnii SP-6 6164085 YP_001793055.1 CDS Lcho_4036 NC_010524.1 4520332 4520571 R KEGG: pol:Bpro_2357 hypothetical protein; hypothetical protein complement(4520332..4520571) Leptothrix cholodnii SP-6 6164086 YP_001793056.1 CDS Lcho_4037 NC_010524.1 4520742 4521245 R PFAM: Domain of unknown function DUF1854; KEGG: bpa:BPP3181 hypothetical protein; hypothetical protein complement(4520742..4521245) Leptothrix cholodnii SP-6 6164087 YP_001793057.1 CDS Lcho_4038 NC_010524.1 4521255 4523435 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1021 putative ABC transporter; ABC transporter-like protein complement(4521255..4523435) Leptothrix cholodnii SP-6 6160545 YP_001793058.1 CDS Lcho_4039 NC_010524.1 4523758 4525941 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 4523758..4525941 Leptothrix cholodnii SP-6 6160546 YP_001793059.1 CDS Lcho_4040 NC_010524.1 4525990 4528587 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 4525990..4528587 Leptothrix cholodnii SP-6 6160547 YP_001793060.1 CDS Lcho_4041 NC_010524.1 4528621 4529529 D PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: mpt:Mpe_A1207 hypothetical protein; hypothetical protein 4528621..4529529 Leptothrix cholodnii SP-6 6160548 YP_001793061.1 CDS Lcho_4044 NC_010524.1 4530201 4532135 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_1960 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4530201..4532135) Leptothrix cholodnii SP-6 6160551 YP_001793062.1 CDS Lcho_4045 NC_010524.1 4532324 4533043 D KEGG: mpt:Mpe_A0319 hypothetical protein; hypothetical protein 4532324..4533043 Leptothrix cholodnii SP-6 6163232 YP_001793063.1 CDS Lcho_4046 NC_010524.1 4533056 4533556 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A0318 hypothetical protein; redoxin domain-containing protein complement(4533056..4533556) Leptothrix cholodnii SP-6 6163233 YP_001793064.1 CDS Lcho_4047 NC_010524.1 4533768 4535240 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: mpt:Mpe_A0086 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B 4533768..4535240 Leptothrix cholodnii SP-6 6163234 YP_001793065.1 CDS Lcho_4048 NC_010524.1 4535262 4535933 R KEGG: mpt:Mpe_A0087 hypothetical protein; hypothetical protein complement(4535262..4535933) Leptothrix cholodnii SP-6 6163235 YP_001793066.1 CDS pyrE NC_010524.1 4535930 4536625 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(4535930..4536625) Leptothrix cholodnii SP-6 6163236 YP_001793067.1 CDS Lcho_4050 NC_010524.1 4536641 4537429 D KEGG: mpt:Mpe_A0089 DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 4536641..4537429 Leptothrix cholodnii SP-6 6163237 YP_001793068.1 CDS Lcho_4051 NC_010524.1 4537492 4538628 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: sit:TM1040_2627 protein of unknown function UPF0052 and CofD; hypothetical protein 4537492..4538628 Leptothrix cholodnii SP-6 6163238 YP_001793069.1 CDS Lcho_4052 NC_010524.1 4538822 4539487 D KEGG: bvi:Bcep1808_7527 hypothetical protein; hypothetical protein 4538822..4539487 Leptothrix cholodnii SP-6 6162885 YP_001793070.1 CDS Lcho_4053 NC_010524.1 4539528 4540166 D PFAM: beta-lactamase domain protein; KEGG: aav:Aave_0282 beta-lactamase domain protein; beta-lactamase domain-containing protein 4539528..4540166 Leptothrix cholodnii SP-6 6162886 YP_001793071.1 CDS Lcho_4054 NC_010524.1 4540240 4540833 D KEGG: pau:PA14_00960 putative lipoprotein; hypothetical protein 4540240..4540833 Leptothrix cholodnii SP-6 6162887 YP_001793072.1 CDS Lcho_4055 NC_010524.1 4540844 4542181 D TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bbr:BB0814 hypothetical protein; type VI secretion protein 4540844..4542181 Leptothrix cholodnii SP-6 6162888 YP_001793073.1 CDS Lcho_4056 NC_010524.1 4542212 4543594 D TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: azo:azo3891 hypothetical protein; hypothetical protein 4542212..4543594 Leptothrix cholodnii SP-6 6162889 YP_001793074.1 CDS Lcho_4057 NC_010524.1 4543591 4547253 D TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: azo:azo3890 conserved hypothetical ImcF-related protein; type VI secretion protein IcmF 4543591..4547253 Leptothrix cholodnii SP-6 6162890 YP_001793075.1 CDS Lcho_4058 NC_010524.1 4547278 4547973 D KEGG: azo:azo3889 hypothetical protein; hypothetical protein 4547278..4547973 Leptothrix cholodnii SP-6 6162891 YP_001793076.1 CDS Lcho_4059 NC_010524.1 4547985 4549958 D SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: azo:azo3888 putative serine/threonine kinase; serine/threonine protein kinase 4547985..4549958 Leptothrix cholodnii SP-6 6162594 YP_001793077.1 CDS Lcho_4060 NC_010524.1 4550007 4550717 D PFAM: Peptidase M15A; KEGG: bfr:BF2347 hypothetical protein; peptidase M15A 4550007..4550717 Leptothrix cholodnii SP-6 6162595 YP_001793078.1 CDS Lcho_4061 NC_010524.1 4550724 4551104 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_3251 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(4550724..4551104) Leptothrix cholodnii SP-6 6162596 YP_001793079.1 CDS Lcho_4062 NC_010524.1 4551142 4551744 R PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_3028 OmpA/MotB; OmpA/MotB domain-containing protein complement(4551142..4551744) Leptothrix cholodnii SP-6 6162597 YP_001793080.1 CDS Lcho_4063 NC_010524.1 4551741 4552508 R SMART: protein phosphatase 2C domain protein; KEGG: azo:azo3885 putative phosphoprotein phosphatase; protein serine/threonine phosphatase complement(4551741..4552508) Leptothrix cholodnii SP-6 6162598 YP_001793081.1 CDS Lcho_4064 NC_010524.1 4552514 4554256 R TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: azo:azo3884 hypothetical regulatory protein; FHA domain-containing protein complement(4552514..4554256) Leptothrix cholodnii SP-6 6162599 YP_001793082.1 CDS Lcho_4065 NC_010524.1 4554537 4555172 D KEGG: ddi:DDB_0191488 zipper-like domain-containing protein; hypothetical protein 4554537..4555172 Leptothrix cholodnii SP-6 6162600 YP_001793083.1 CDS Lcho_4066 NC_010524.1 4555185 4556816 R PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: azo:azo3908 putative serine/threonine protein kinase; serine/threonine protein kinase complement(4555185..4556816) Leptothrix cholodnii SP-6 6162152 YP_001793084.1 CDS Lcho_4067 NC_010524.1 4556834 4557706 R PFAM: histidine kinase HAMP region domain protein; KEGG: azo:azo3909 probable sensor protein; sensor protein complement(4556834..4557706) Leptothrix cholodnii SP-6 6162153 YP_001793085.1 CDS Lcho_4068 NC_010524.1 4557822 4558019 R hypothetical protein complement(4557822..4558019) Leptothrix cholodnii SP-6 6162154 YP_001793086.1 CDS Lcho_4069 NC_010524.1 4558033 4562034 R KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(4558033..4562034) Leptothrix cholodnii SP-6 6162155 YP_001793087.1 CDS trkA NC_010524.1 4562267 4563682 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 4562267..4563682 Leptothrix cholodnii SP-6 6162156 YP_001793088.1 CDS Lcho_4071 NC_010524.1 4563703 4565160 D PFAM: cation transporter; KEGG: dac:Daci_5998 cation transporter; cation transporter 4563703..4565160 Leptothrix cholodnii SP-6 6162157 YP_001793089.1 CDS Lcho_4072 NC_010524.1 4565176 4566525 R KEGG: hch:HCH_04281 hypothetical protein; hypothetical protein complement(4565176..4566525) Leptothrix cholodnii SP-6 6162024 YP_001793090.1 CDS Lcho_4073 NC_010524.1 4566531 4567652 R KEGG: mxa:MXAN_7132 hypothetical protein; hypothetical protein complement(4566531..4567652) Leptothrix cholodnii SP-6 6162025 YP_001793091.1 CDS Lcho_4074 NC_010524.1 4567656 4568465 R KEGG: mxa:MXAN_7136 hypothetical protein; hypothetical protein complement(4567656..4568465) Leptothrix cholodnii SP-6 6162026 YP_001793092.1 CDS Lcho_4075 NC_010524.1 4568465 4569064 R KEGG: mxa:MXAN_7135 hypothetical protein; hypothetical protein complement(4568465..4569064) Leptothrix cholodnii SP-6 6162027 YP_001793093.1 CDS Lcho_4076 NC_010524.1 4569075 4569821 R hypothetical protein complement(4569075..4569821) Leptothrix cholodnii SP-6 6162028 YP_001793094.1 CDS Lcho_4077 NC_010524.1 4569808 4570995 R KEGG: mxa:MXAN_1306 hypothetical protein; hypothetical protein complement(4569808..4570995) Leptothrix cholodnii SP-6 6162029 YP_001793095.1 CDS Lcho_4078 NC_010524.1 4571006 4571467 R KEGG: mxa:MXAN_7133 hypothetical protein; hypothetical protein complement(4571006..4571467) Leptothrix cholodnii SP-6 6162030 YP_001793096.1 CDS Lcho_4079 NC_010524.1 4571480 4571971 R KEGG: hch:HCH_07060 hypothetical protein; hypothetical protein complement(4571480..4571971) Leptothrix cholodnii SP-6 6161750 YP_001793097.1 CDS Lcho_4080 NC_010524.1 4571976 4574291 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: pae:PA0095 hypothetical protein; ImpA family type VI secretion-associated protein complement(4571976..4574291) Leptothrix cholodnii SP-6 6161751 YP_001793098.1 CDS Lcho_4081 NC_010524.1 4574388 4575758 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: azo:azo3907 hypothetical protein; type 12 methyltransferase complement(4574388..4575758) Leptothrix cholodnii SP-6 6161752 YP_001793099.1 CDS Lcho_4082 NC_010524.1 4575815 4576696 R KEGG: plu:plu0964 insecticidal toxin complex protein TccC5; hypothetical protein complement(4575815..4576696) Leptothrix cholodnii SP-6 6161753 YP_001793100.1 CDS Lcho_4083 NC_010524.1 4576776 4577921 R hypothetical protein complement(4576776..4577921) Leptothrix cholodnii SP-6 6161754 YP_001793101.1 CDS Lcho_4084 NC_010524.1 4577943 4580693 R KEGG: azo:azo3903 putative ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase complement(4577943..4580693) Leptothrix cholodnii SP-6 6161755 YP_001793102.1 CDS Lcho_4085 NC_010524.1 4580698 4581831 R TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: azo:azo3902 putative cytoplasmic protein, SciB; type VI secretion protein complement(4580698..4581831) Leptothrix cholodnii SP-6 6161756 YP_001793103.1 CDS Lcho_4086 NC_010524.1 4581857 4583773 R TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: azo:azo3901 putative cytoplasmic protein, SciC; type VI secretion protein complement(4581857..4583773) Leptothrix cholodnii SP-6 6160208 YP_001793104.1 CDS Lcho_4087 NC_010524.1 4583770 4584324 R TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: azo:azo3900 putative cytoplasmic protein, SciD; type VI secretion system lysozyme-like protein complement(4583770..4584324) Leptothrix cholodnii SP-6 6160209 YP_001793105.1 CDS Lcho_4088 NC_010524.1 4584347 4584871 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3898 putative cytoplasmic protein,SciK; Hcp1 family type VI secretion system effector complement(4584347..4584871) Leptothrix cholodnii SP-6 6160210 YP_001793106.1 CDS Lcho_4089 NC_010524.1 4584916 4585401 R PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM; hypothetical protein complement(4584916..4585401) Leptothrix cholodnii SP-6 6160211 YP_001793107.1 CDS Lcho_4090 NC_010524.1 4585545 4587041 R TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: azo:azo3896 putative cytoplasmic protein, SciI; EvpB family type VI secretion protein complement(4585545..4587041) Leptothrix cholodnii SP-6 6160212 YP_001793108.1 CDS Lcho_4091 NC_010524.1 4587063 4587569 R TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: azo:azo3895 putative cytoplasmic protein,SciH; type VI secretion protein complement(4587063..4587569) Leptothrix cholodnii SP-6 6160213 YP_001793109.1 CDS Lcho_4092 NC_010524.1 4587619 4588656 R TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: xcv:XCV4202 hypothetical protein; ImpA family type VI secretion-associated protein complement(4587619..4588656) Leptothrix cholodnii SP-6 6160214 YP_001793110.1 CDS Lcho_4093 NC_010524.1 4588782 4591622 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: xac:XAC4113 YapH protein; filamentous hemagglutinin outer membrane protein complement(4588782..4591622) Leptothrix cholodnii SP-6 6159941 YP_001793111.1 CDS Lcho_4094 NC_010524.1 4591633 4593270 R PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pna:Pnap_3704 polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein complement(4591633..4593270) Leptothrix cholodnii SP-6 6159942 YP_001793112.1 CDS Lcho_4095 NC_010524.1 4593267 4595456 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_6889 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(4593267..4595456) Leptothrix cholodnii SP-6 6159943 YP_001793113.1 CDS Lcho_4096 NC_010524.1 4595569 4597383 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1150 signal transduction histidine kinase-like protein; histidine kinase complement(4595569..4597383) Leptothrix cholodnii SP-6 6159944 YP_001793114.1 CDS Lcho_4097 NC_010524.1 4597388 4598107 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rfr:Rfer_2039 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(4597388..4598107) Leptothrix cholodnii SP-6 6159945 YP_001793115.1 CDS Lcho_4098 NC_010524.1 4598436 4599083 D PFAM: regulatory protein LuxR; KEGG: pol:Bpro_4220 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 4598436..4599083 Leptothrix cholodnii SP-6 6159946 YP_001793116.1 CDS Lcho_4099 NC_010524.1 4599129 4599842 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_4219 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 4599129..4599842 Leptothrix cholodnii SP-6 6159947 YP_001793117.1 CDS Lcho_4100 NC_010524.1 4599893 4604026 D PFAM: Tetratricopeptide TPR_4; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bbt:BBta_6648 putative adenylate cyclase; hypothetical protein 4599893..4604026 Leptothrix cholodnii SP-6 6160058 YP_001793118.1 CDS Lcho_4101 NC_010524.1 4603978 4605924 D KEGG: dra:DR_A0144 hypothetical protein; hypothetical protein 4603978..4605924 Leptothrix cholodnii SP-6 6160059 YP_001793119.1 CDS Lcho_4102 NC_010524.1 4605921 4607405 D KEGG: sma:SAV3599 peroxidase; peroxidase 4605921..4607405 Leptothrix cholodnii SP-6 6160060 YP_001793120.1 CDS Lcho_4103 NC_010524.1 4607402 4609459 D PFAM: Patatin; KEGG: pmy:Pmen_2024 patatin; patatin 4607402..4609459 Leptothrix cholodnii SP-6 6160061 YP_001793121.1 CDS Lcho_4104 NC_010524.1 4609533 4610483 R PFAM: peptidase M48 Ste24p; KEGG: mpt:Mpe_A0093 conserved hypothetical signal peptide protein; peptidase M48 Ste24p complement(4609533..4610483) Leptothrix cholodnii SP-6 6160062 YP_001793122.1 CDS Lcho_4105 NC_010524.1 4610539 4612182 R PFAM: major facilitator superfamily MFS_1; KEGG: azo:azo3975 putative AmpG protein; major facilitator transporter complement(4610539..4612182) Leptothrix cholodnii SP-6 6160063 YP_001793123.1 CDS Lcho_4106 NC_010524.1 4612249 4612761 D PFAM: flavin reductase domain protein FMN-binding; KEGG: mpt:Mpe_A3697 hypothetical protein; flavin reductase domain-containing protein 4612249..4612761 Leptothrix cholodnii SP-6 6160064 YP_001793124.1 CDS Lcho_4107 NC_010524.1 4612860 4613285 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tbd:Tbd_2401 thioredoxin; thioredoxin 4612860..4613285 Leptothrix cholodnii SP-6 6160658 YP_001793125.1 CDS pyrF NC_010524.1 4613254 4614108 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(4613254..4614108) Leptothrix cholodnii SP-6 6160659 YP_001793126.1 CDS Lcho_4109 NC_010524.1 4614131 4614772 R KEGG: cau:Caur_0819 hypothetical protein; hypothetical protein complement(4614131..4614772) Leptothrix cholodnii SP-6 6160660 YP_001793127.1 CDS Lcho_4110 NC_010524.1 4614769 4616052 R KEGG: cau:Caur_0818 ATPase-like protein; ATPase-like protein complement(4614769..4616052) Leptothrix cholodnii SP-6 6160661 YP_001793128.1 CDS Lcho_4111 NC_010524.1 4616077 4617450 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(4616077..4617450) Leptothrix cholodnii SP-6 6160662 YP_001793129.1 CDS Lcho_4112 NC_010524.1 4617532 4617930 R hypothetical protein complement(4617532..4617930) Leptothrix cholodnii SP-6 6160663 YP_001793130.1 CDS Lcho_4113 NC_010524.1 4618081 4620486 R KEGG: ava:Ava_1029 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(4618081..4620486) Leptothrix cholodnii SP-6 6160664 YP_001793131.1 CDS Lcho_4114 NC_010524.1 4620510 4621643 R KEGG: sus:Acid_2684 histidine kinase; two component regulator propeller domain-containing protein complement(4620510..4621643) Leptothrix cholodnii SP-6 6163008 YP_001793132.1 CDS Lcho_4115 NC_010524.1 4621676 4622749 R PFAM: Two component regulator propeller; KEGG: mxa:MXAN_7206 sensor histidine kinase/response regulator; two component regulator propeller domain-containing protein complement(4621676..4622749) Leptothrix cholodnii SP-6 6163009 YP_001793133.1 CDS Lcho_4116 NC_010524.1 4622746 4623120 R PFAM: cytochrome c class I; KEGG: syx:SynWH7803_0752 cytochrome c6; cytochrome c class I complement(4622746..4623120) Leptothrix cholodnii SP-6 6163010 YP_001793134.1 CDS Lcho_4117 NC_010524.1 4623181 4624578 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rfr:Rfer_0247 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator complement(4623181..4624578) Leptothrix cholodnii SP-6 6163011 YP_001793135.1 CDS Lcho_4118 NC_010524.1 4624594 4626087 R PFAM: histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_0246 histidine kinase; sensor protein complement(4624594..4626087) Leptothrix cholodnii SP-6 6163012 YP_001793136.1 CDS Lcho_4119 NC_010524.1 4626166 4626693 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: hip:CGSHiEE_05405 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4626166..4626693 Leptothrix cholodnii SP-6 6163013 YP_001793137.1 CDS Lcho_4120 NC_010524.1 4626775 4627374 R PFAM: TPR repeat-containing protein; KEGG: cpt:CpB0720 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase; hypothetical protein complement(4626775..4627374) Leptothrix cholodnii SP-6 6161602 YP_001793138.1 CDS Lcho_4121 NC_010524.1 4627371 4628195 R PFAM: cytochrome c assembly protein; KEGG: gsu:GSU0705 cytochrome c biogenesis protein, CcmF/CcyK/CcsA family; cytochrome c assembly protein complement(4627371..4628195) Leptothrix cholodnii SP-6 6161603 YP_001793139.1 CDS Lcho_4122 NC_010524.1 4628188 4629222 R KEGG: nca:Noca_2201 ResB family protein; hypothetical protein complement(4628188..4629222) Leptothrix cholodnii SP-6 6161604 YP_001793140.1 CDS Lcho_4123 NC_010524.1 4629219 4631822 R KEGG: rfr:Rfer_0259 hypothetical protein; hypothetical protein complement(4629219..4631822) Leptothrix cholodnii SP-6 6161605 YP_001793141.1 CDS Lcho_4124 NC_010524.1 4631822 4632901 R PFAM: NHL repeat containing protein; KEGG: gsu:GSU3225 NHL repeat domain protein; NHL repeat-containing protein complement(4631822..4632901) Leptothrix cholodnii SP-6 6161606 YP_001793142.1 CDS Lcho_4125 NC_010524.1 4632928 4633947 R PFAM: NHL repeat containing protein; KEGG: afw:Anae109_1838 NHL repeat containing protein; NHL repeat-containing protein complement(4632928..4633947) Leptothrix cholodnii SP-6 6161607 YP_001793143.1 CDS Lcho_4126 NC_010524.1 4633968 4634360 R KEGG: gur:Gura_2745 hypothetical protein; hypothetical protein complement(4633968..4634360) Leptothrix cholodnii SP-6 6161608 YP_001793144.1 CDS Lcho_4127 NC_010524.1 4634357 4634956 R KEGG: gur:Gura_3254 hypothetical protein; hypothetical protein complement(4634357..4634956) Leptothrix cholodnii SP-6 6163756 YP_001793145.1 CDS Lcho_4128 NC_010524.1 4634966 4635865 R PFAM: Tetratricopeptide TPR_4; KEGG: tcr:506401.190 hypothetical protein Pfam: Myosin_tail_1 FliD_C Nnf1 DUF593 PROSITE: GLU_RICH; hypothetical protein complement(4634966..4635865) Leptothrix cholodnii SP-6 6163757 YP_001793146.1 CDS Lcho_4129 NC_010524.1 4635862 4636758 R PFAM: Tetratricopeptide TPR_4; KEGG: ade:Adeh_1603 lytic transglycosylase; hypothetical protein complement(4635862..4636758) Leptothrix cholodnii SP-6 6163758 YP_001793147.1 CDS Lcho_4130 NC_010524.1 4636755 4637807 R PFAM: cytochrome c class I; KEGG: bbr:BB4582 putative cytochrome c; cytochrome c class I complement(4636755..4637807) Leptothrix cholodnii SP-6 6163759 YP_001793148.1 CDS Lcho_4131 NC_010524.1 4637818 4638300 R KEGG: gur:Gura_2745 hypothetical protein; hypothetical protein complement(4637818..4638300) Leptothrix cholodnii SP-6 6163760 YP_001793149.1 CDS Lcho_4132 NC_010524.1 4638361 4640316 R hypothetical protein complement(4638361..4640316) Leptothrix cholodnii SP-6 6163761 YP_001793150.1 CDS Lcho_4133 NC_010524.1 4640357 4641436 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mxa:MXAN_0469 putative foldase protein PrsA; PpiC-type peptidyl-prolyl cis-trans isomerase complement(4640357..4641436) Leptothrix cholodnii SP-6 6163762 YP_001793151.1 CDS Lcho_4134 NC_010524.1 4641445 4642329 R KEGG: gsu:GSU0618 cytochrome c family protein; cytochrome c family protein complement(4641445..4642329) Leptothrix cholodnii SP-6 6163795 YP_001793152.1 CDS Lcho_4135 NC_010524.1 4642557 4643663 R PFAM: NHL repeat containing protein; KEGG: gme:Gmet_1869 NHL repeat protein; NHL repeat-containing protein complement(4642557..4643663) Leptothrix cholodnii SP-6 6163796 YP_001793153.1 CDS Lcho_4136 NC_010524.1 4643685 4644545 D PFAM: cytochrome c class I; KEGG: sus:Acid_3506 hypothetical protein; cytochrome c class I 4643685..4644545 Leptothrix cholodnii SP-6 6163797 YP_001793154.1 CDS Lcho_4137 NC_010524.1 4644587 4645549 D PFAM: cytochrome c class I; KEGG: rme:Rmet_6106 putative high-affinity Fe2+/Pb2+ permease; cytochrome c class I 4644587..4645549 Leptothrix cholodnii SP-6 6163798 YP_001793155.1 CDS Lcho_4138 NC_010524.1 4645763 4646236 D hypothetical protein 4645763..4646236 Leptothrix cholodnii SP-6 6163799 YP_001793156.1 CDS Lcho_4139 NC_010524.1 4646332 4647261 R PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: rca:Rcas_2653 response regulator receiver and SARP domain protein; SARP family transcriptional regulator complement(4646332..4647261) Leptothrix cholodnii SP-6 6163800 YP_001793157.1 CDS Lcho_4140 NC_010524.1 4647394 4648125 R PFAM: cyclic nucleotide-binding; KEGG: dac:Daci_5739 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(4647394..4648125) Leptothrix cholodnii SP-6 6163801 YP_001793158.1 CDS Lcho_4141 NC_010524.1 4648152 4649279 R KEGG: mpt:Mpe_A0562 serine-pyruvate aminotransferase; serine-pyruvate aminotransferase complement(4648152..4649279) Leptothrix cholodnii SP-6 6164117 YP_001793159.1 CDS Lcho_4142 NC_010524.1 4649412 4649882 R KEGG: ajs:Ajs_3366 integron integrase; integron integrase complement(4649412..4649882) Leptothrix cholodnii SP-6 6164118 YP_001793160.1 CDS Lcho_4143 NC_010524.1 4650053 4650940 R PFAM: Integrase catalytic region; KEGG: pol:Bpro_4706 integrase, catalytic region; integrase catalytic subunit complement(4650053..4650940) Leptothrix cholodnii SP-6 6164119 YP_001793161.1 CDS Lcho_4144 NC_010524.1 4650937 4651236 R PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_4705 hypothetical protein; transposase IS3/IS911 family protein complement(4650937..4651236) Leptothrix cholodnii SP-6 6164120 YP_001793162.1 CDS Lcho_4145 NC_010524.1 4651908 4652888 D hypothetical protein 4651908..4652888 Leptothrix cholodnii SP-6 6164121 YP_001793163.1 CDS Lcho_4146 NC_010524.1 4653151 4653306 D hypothetical protein 4653151..4653306 Leptothrix cholodnii SP-6 6164122 YP_001793164.1 CDS Lcho_4147 NC_010524.1 4654283 4654783 D KEGG: vvy:VV1883 hypothetical protein; hypothetical protein 4654283..4654783 Leptothrix cholodnii SP-6 6164123 YP_001793165.1 CDS Lcho_4148 NC_010524.1 4654808 4655101 D hypothetical protein 4654808..4655101 Leptothrix cholodnii SP-6 6164046 YP_001793166.1 CDS Lcho_4149 NC_010524.1 4655391 4655555 D KEGG: aav:Aave_4358 transposition helper protein; transposition helper protein 4655391..4655555 Leptothrix cholodnii SP-6 6164047 YP_001793167.1 CDS Lcho_4150 NC_010524.1 4655613 4656104 D PFAM: transposase IS3/IS911 family protein; KEGG: bpt:Bpet4600 putative transposase; transposase IS3/IS911 family protein 4655613..4656104 Leptothrix cholodnii SP-6 6164048 YP_001793168.1 CDS Lcho_4151 NC_010524.1 4656101 4657144 D PFAM: Integrase catalytic region; KEGG: sbl:Sbal_4350 integrase, catalytic region; integrase catalytic subunit 4656101..4657144 Leptothrix cholodnii SP-6 6164049 YP_001793169.1 CDS Lcho_4152 NC_010524.1 4657232 4657516 D KEGG: aav:Aave_4358 transposition helper protein; transposition helper protein 4657232..4657516 Leptothrix cholodnii SP-6 6164050 YP_001793170.1 CDS Lcho_4153 NC_010524.1 4657513 4658604 D PFAM: Integrase catalytic region; KEGG: aav:Aave_3792 integrase, catalytic region; integrase catalytic subunit 4657513..4658604 Leptothrix cholodnii SP-6 6164051 YP_001793171.1 CDS Lcho_4155 NC_010524.1 4659368 4659898 R PFAM: UspA domain protein; KEGG: pol:Bpro_2222 UspA; UspA domain-containing protein complement(4659368..4659898) Leptothrix cholodnii SP-6 6161158 YP_001793172.1 CDS Lcho_4156 NC_010524.1 4659895 4660866 R PFAM: Integral membrane protein TerC; KEGG: pfo:Pfl_3259 integral membrane protein TerC; integral membrane protein TerC complement(4659895..4660866) Leptothrix cholodnii SP-6 6161159 YP_001793173.1 CDS Lcho_4157 NC_010524.1 4660877 4661383 R KEGG: har:HEAR0214 putative universal stress protein UspA; putative universal stress protein UspA complement(4660877..4661383) Leptothrix cholodnii SP-6 6161160 YP_001793174.1 CDS Lcho_4158 NC_010524.1 4661533 4662462 D PFAM: regulatory protein LysR; KEGG: rfr:Rfer_3458 transcriptional regulator, LysR family; LysR family transcriptional regulator 4661533..4662462 Leptothrix cholodnii SP-6 6161161 YP_001793175.1 CDS Lcho_4159 NC_010524.1 4662561 4663448 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: afw:Anae109_0604 activator of HSP90 ATPase 1 family protein; activator of Hsp90 ATPase 1 family protein 4662561..4663448 Leptothrix cholodnii SP-6 6161162 YP_001793176.1 CDS Lcho_4160 NC_010524.1 4663464 4663919 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psa:PST_3589 glyoxylase I family protein; glyoxalase/bleomycin resistance protein/dioxygenase 4663464..4663919 Leptothrix cholodnii SP-6 6161163 YP_001793177.1 CDS Lcho_4161 NC_010524.1 4663916 4664308 D PFAM: Domain of unknown function DUF1801; KEGG: cph:Cpha266_1691 hypothetical protein; hypothetical protein 4663916..4664308 Leptothrix cholodnii SP-6 6161164 YP_001793178.1 CDS Lcho_4162 NC_010524.1 4664319 4664510 R hypothetical protein complement(4664319..4664510) Leptothrix cholodnii SP-6 6162699 YP_001793179.1 CDS Lcho_4163 NC_010524.1 4664630 4665040 D KEGG: tbd:Tbd_1198 hypothetical protein; hypothetical protein 4664630..4665040 Leptothrix cholodnii SP-6 6162700 YP_001793180.1 CDS Lcho_4164 NC_010524.1 4665071 4666003 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A0157 putative LysR-family regulatory protein; LysR family transcriptional regulator complement(4665071..4666003) Leptothrix cholodnii SP-6 6162701 YP_001793181.1 CDS Lcho_4165 NC_010524.1 4666101 4666820 D KEGG: mpt:Mpe_A0158 2-haloacid dehalogenase; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 4666101..4666820 Leptothrix cholodnii SP-6 6162702 YP_001793182.1 CDS Lcho_4166 NC_010524.1 4666887 4669091 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 4666887..4669091 Leptothrix cholodnii SP-6 6162703 YP_001793183.1 CDS Lcho_4167 NC_010524.1 4669138 4671876 R PFAM: type III restriction protein res subunit; KEGG: neu:NE2306 hypothetical protein; type III restriction protein res subunit complement(4669138..4671876) Leptothrix cholodnii SP-6 6162704 YP_001793184.1 CDS Lcho_4168 NC_010524.1 4671873 4672973 R KEGG: amt:Amet_3301 hypothetical protein; hypothetical protein complement(4671873..4672973) Leptothrix cholodnii SP-6 6162705 YP_001793185.1 CDS Lcho_4169 NC_010524.1 4672970 4674631 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: neu:NE2309 adenine specific DNA methylase Mod; DNA methylase N-4/N-6 domain-containing protein complement(4672970..4674631) Leptothrix cholodnii SP-6 6162397 YP_001793186.1 CDS Lcho_4170 NC_010524.1 4674642 4676357 R KEGG: tbd:Tbd_0934 hypothetical protein; hypothetical protein complement(4674642..4676357) Leptothrix cholodnii SP-6 6162398 YP_001793187.1 CDS Lcho_4171 NC_010524.1 4676357 4679200 R PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: eba:ebA2413 helicase (SNF2 family); helicase domain-containing protein complement(4676357..4679200) Leptothrix cholodnii SP-6 6162399 YP_001793188.1 CDS Lcho_4172 NC_010524.1 4679313 4679690 R KEGG: aav:Aave_2031 hypothetical protein; hypothetical protein complement(4679313..4679690) Leptothrix cholodnii SP-6 6162400 YP_001793189.1 CDS Lcho_4173 NC_010524.1 4679798 4681000 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_3324 drug resistance MFS transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter 4679798..4681000 Leptothrix cholodnii SP-6 6162401 YP_001793190.1 CDS Lcho_4174 NC_010524.1 4681031 4681342 D KEGG: aav:Aave_1245 hypothetical protein; hypothetical protein 4681031..4681342 Leptothrix cholodnii SP-6 6162402 YP_001793191.1 CDS Lcho_4175 NC_010524.1 4681343 4684594 R KEGG: eba:ebA6472 putative response regulator receiver; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(4681343..4684594) Leptothrix cholodnii SP-6 6162227 YP_001793192.1 CDS Lcho_4176 NC_010524.1 4684615 4685001 R PFAM: response regulator receiver; KEGG: azo:azo1491 probable polar differentiation response regulator; response regulator receiver protein complement(4684615..4685001) Leptothrix cholodnii SP-6 6162228 YP_001793193.1 CDS Lcho_4177 NC_010524.1 4685004 4686476 R KEGG: eba:ebA6478 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(4685004..4686476) Leptothrix cholodnii SP-6 6162229 YP_001793194.1 CDS Lcho_4178 NC_010524.1 4686624 4687313 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: mpt:Mpe_A2050 outer membrane protein; OmpA/MotB domain-containing protein complement(4686624..4687313) Leptothrix cholodnii SP-6 6162230 YP_001793195.1 CDS Lcho_4179 NC_010524.1 4687483 4688457 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mpt:Mpe_A0213 putative 2-hydroxyacid dehydrogenase in PhoH-CsgG intergenic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(4687483..4688457) Leptothrix cholodnii SP-6 6162231 YP_001793196.1 CDS Lcho_4180 NC_010524.1 4688500 4689822 D PFAM: putative RNA methylase; THUMP domain protein; KEGG: ajs:Ajs_0350 putative RNA methylase; putative RNA methylase 4688500..4689822 Leptothrix cholodnii SP-6 6162232 YP_001793197.1 CDS Lcho_4181 NC_010524.1 4689913 4690245 D PFAM: protein of unknown function DUF1508; KEGG: ecx:EcHS_A2222 hypothetical protein; hypothetical protein 4689913..4690245 Leptothrix cholodnii SP-6 6162233 YP_001793198.1 CDS Lcho_4182 NC_010524.1 4690250 4690684 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_0156 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(4690250..4690684) Leptothrix cholodnii SP-6 6162121 YP_001793199.1 CDS Lcho_4183 NC_010524.1 4690722 4692200 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: gsu:GSU0018 transcriptional regulator, GntR family/aminotransferase class-I; transcriptional regulator complement(4690722..4692200) Leptothrix cholodnii SP-6 6162122 YP_001793200.1 CDS Lcho_4184 NC_010524.1 4692352 4692690 D hypothetical protein 4692352..4692690 Leptothrix cholodnii SP-6 6162123 YP_001793201.1 CDS Lcho_4185 NC_010524.1 4692741 4693466 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mpt:Mpe_A3042 ribosomal small subunit pseudouridine synthase A protein; pseudouridine synthase 4692741..4693466 Leptothrix cholodnii SP-6 6162124 YP_001793202.1 CDS Lcho_4186 NC_010524.1 4693411 4693779 R hypothetical protein complement(4693411..4693779) Leptothrix cholodnii SP-6 6162125 YP_001793203.1 CDS Lcho_4187 NC_010524.1 4693870 4694427 R KEGG: pol:Bpro_0398 hypothetical protein; hypothetical protein complement(4693870..4694427) Leptothrix cholodnii SP-6 6162126 YP_001793204.1 CDS Lcho_4188 NC_010524.1 4694601 4695059 D PFAM: Carboxymuconolactone decarboxylase; KEGG: bmu:Bmul_5046 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 4694601..4695059 Leptothrix cholodnii SP-6 6162127 YP_001793205.1 CDS Lcho_4189 NC_010524.1 4695137 4695559 D KEGG: dar:Daro_1853 hypothetical protein; hypothetical protein 4695137..4695559 Leptothrix cholodnii SP-6 6160810 YP_001793206.1 CDS Lcho_4190 NC_010524.1 4695666 4695998 R KEGG: rca:Rcas_0081 hypothetical protein; hypothetical protein complement(4695666..4695998) Leptothrix cholodnii SP-6 6160811 YP_001793207.1 CDS Lcho_4191 NC_010524.1 4695995 4696225 R PFAM: protein of unknown function DUF433; KEGG: ava:Ava_1741 protein of unknown function DUF433; hypothetical protein complement(4695995..4696225) Leptothrix cholodnii SP-6 6160812 YP_001793208.1 CDS Lcho_4192 NC_010524.1 4696258 4702065 R KEGG: mpt:Mpe_A3346 putative excinuclease ABC subunit A (DNA repair ATP-binding) ABC transporter protein; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A complement(4696258..4702065) Leptothrix cholodnii SP-6 6160813 YP_001793209.1 CDS Lcho_4193 NC_010524.1 4702369 4702557 R KEGG: bmu:Bmul_2476 protein of unknown function UPF0153; hypothetical protein complement(4702369..4702557) Leptothrix cholodnii SP-6 6160814 YP_001793210.1 CDS Lcho_4194 NC_010524.1 4702704 4703369 D TIGRFAM: yecA family protein; KEGG: bvi:Bcep1808_2979 YecA family protein; yecA family protein 4702704..4703369 Leptothrix cholodnii SP-6 6160815 YP_001793211.1 CDS Lcho_4195 NC_010524.1 4703366 4703893 D PFAM: protein of unknown function DUF45; KEGG: mpt:Mpe_A1039 hypothetical protein; hypothetical protein 4703366..4703893 Leptothrix cholodnii SP-6 6160816 YP_001793212.1 CDS Lcho_4196 NC_010524.1 4704139 4706196 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4704139..4706196 Leptothrix cholodnii SP-6 6161381 YP_001793213.1 CDS gidB NC_010524.1 4706186 4706842 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4706186..4706842 Leptothrix cholodnii SP-6 6161382 YP_001793214.1 CDS Lcho_4198 NC_010524.1 4706951 4707562 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: aav:Aave_0053 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4706951..4707562 Leptothrix cholodnii SP-6 6161383 YP_001793215.1 CDS Lcho_4199 NC_010524.1 4707661 4708431 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 4707661..4708431 Leptothrix cholodnii SP-6 6161384 YP_001793216.1 CDS Lcho_4200 NC_010524.1 4708432 4709523 R PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A3370 hypothetical protein; beta-lactamase domain-containing protein complement(4708432..4709523) Leptothrix cholodnii SP-6 6161385 YP_001793217.1 CDS Lcho_4201 NC_010524.1 4709609 4710058 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: reh:H16_A0165 transcriptional regulator, MerR-family; MerR family transcriptional regulator 4709609..4710058 Leptothrix cholodnii SP-6 6161386 YP_001793218.1 CDS Lcho_4202 NC_010524.1 4710164 4710628 D PFAM: thioesterase superfamily protein; KEGG: dac:Daci_5992 thioesterase superfamily protein; thioesterase superfamily protein 4710164..4710628 Leptothrix cholodnii SP-6 6161387 YP_001793219.1 CDS Lcho_4203 NC_010524.1 4710724 4711386 D PFAM: carbonic anhydrase; KEGG: mpt:Mpe_A3369 carbonate dehydratase; carbonate dehydratase 4710724..4711386 Leptothrix cholodnii SP-6 6161895 YP_001793220.1 CDS aceK NC_010524.1 4711396 4713207 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4711396..4713207 Leptothrix cholodnii SP-6 6161896 YP_001793221.1 CDS Lcho_4205 NC_010524.1 4713228 4714415 D KEGG: mpt:Mpe_A3367 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 4713228..4714415 Leptothrix cholodnii SP-6 6161897 YP_001793222.1 CDS Lcho_4206 NC_010524.1 4714439 4715152 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpb:RPB_4520 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4714439..4715152 Leptothrix cholodnii SP-6 6161898 YP_001793223.1 CDS Lcho_4207 NC_010524.1 4715179 4716309 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_0108 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 4715179..4716309 Leptothrix cholodnii SP-6 6161899 YP_001793224.1 CDS Lcho_4208 NC_010524.1 4716334 4716816 R KEGG: pna:Pnap_0003 hypothetical protein; hypothetical protein complement(4716334..4716816) Leptothrix cholodnii SP-6 6161900 YP_001793225.1 CDS Lcho_4209 NC_010524.1 4716868 4717803 R PFAM: restriction endonuclease; KEGG: ecv:APECO1_2075 methylated adenine and cytosine restriction protein; restriction endonuclease complement(4716868..4717803) Leptothrix cholodnii SP-6 6161901 YP_001793226.1 CDS Lcho_4210 NC_010524.1 4717920 4721252 R KEGG: dar:Daro_3006 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(4717920..4721252) Leptothrix cholodnii SP-6 6163802 YP_001793227.1 CDS Lcho_4211 NC_010524.1 4721306 4721818 R KEGG: eba:ebA226 hypothetical protein; hypothetical protein complement(4721306..4721818) Leptothrix cholodnii SP-6 6163803 YP_001793228.1 CDS Lcho_4212 NC_010524.1 4721828 4724101 R KEGG: mfa:Mfla_1283 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(4721828..4724101) Leptothrix cholodnii SP-6 6163804 YP_001793229.1 CDS Lcho_4213 NC_010524.1 4724109 4724963 R KEGG: azo:azo3684 putative periplasmic binding protein; putative periplasmic-binding protein complement(4724109..4724963) Leptothrix cholodnii SP-6 6163805 YP_001793230.1 CDS Lcho_4214 NC_010524.1 4725110 4726369 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mpt:Mpe_A1565 hypothetical protein; polyhydroxyalkanoate depolymerase complement(4725110..4726369) Leptothrix cholodnii SP-6 6163806 YP_001793231.1 CDS Lcho_4215 NC_010524.1 4726506 4727168 D PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A1566 glutathione S-transferase; glutathione S-transferase domain-containing protein 4726506..4727168 Leptothrix cholodnii SP-6 6163807 YP_001793232.1 CDS Lcho_4216 NC_010524.1 4727184 4727600 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: mpt:Mpe_A1567 hypothetical protein; cupin complement(4727184..4727600) Leptothrix cholodnii SP-6 6163808 YP_001793233.1 CDS Lcho_4217 NC_010524.1 4727729 4728646 D PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: bmu:Bmul_0155 ATPase BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 4727729..4728646 Leptothrix cholodnii SP-6 6163889 YP_001793234.1 CDS Lcho_4218 NC_010524.1 4728679 4729797 D KEGG: pen:PSEEN4380 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 4728679..4729797 Leptothrix cholodnii SP-6 6163890 YP_001793235.1 CDS Lcho_4219 NC_010524.1 4729975 4731087 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: har:HEAR0106 putative TRAP-type C4-dicarboxylate transport system, periplasmic component; TRAP C4-dicarboxylate transport system permease subunit DctP 4729975..4731087 Leptothrix cholodnii SP-6 6163891 YP_001793236.1 CDS Lcho_4220 NC_010524.1 4731180 4731803 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: afw:Anae109_2923 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter DctQ 4731180..4731803 Leptothrix cholodnii SP-6 6163892 YP_001793237.1 CDS Lcho_4221 NC_010524.1 4731800 4733821 D PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4053 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 4731800..4733821 Leptothrix cholodnii SP-6 6163893 YP_001793238.1 CDS Lcho_4222 NC_010524.1 4733841 4734464 R KEGG: aav:Aave_1579 hypothetical protein; hypothetical protein complement(4733841..4734464) Leptothrix cholodnii SP-6 6163894 YP_001793239.1 CDS Lcho_4223 NC_010524.1 4734610 4735215 D PFAM: DSBA oxidoreductase; KEGG: mpt:Mpe_A3362 putative 2-hydroxychromene-2-carboxylate isomerase protein; DSBA oxidoreductase 4734610..4735215 Leptothrix cholodnii SP-6 6160683 YP_001793240.1 CDS Lcho_4224 NC_010524.1 4735237 4735521 R KEGG: mpt:Mpe_A3355 hypothetical protein; hypothetical protein complement(4735237..4735521) Leptothrix cholodnii SP-6 6160684 YP_001793241.1 CDS Lcho_4225 NC_010524.1 4735796 4737406 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: mpt:Mpe_A0148 putative RNA polymerase sigma N (sigma 54) factor transcription regulator protein; RNA polymerase sigma-54 subunit RpoN complement(4735796..4737406) Leptothrix cholodnii SP-6 6160685 YP_001793242.1 CDS Lcho_4226 NC_010524.1 4737426 4738232 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0149 putative ATP-binding ABC transporter protein; ABC transporter-like protein complement(4737426..4738232) Leptothrix cholodnii SP-6 6160686 YP_001793243.1 CDS Lcho_4227 NC_010524.1 4738229 4738864 R TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: mpt:Mpe_A0150 OstA-like protein; lipopolysaccharide transport periplasmic protein LptA complement(4738229..4738864) Leptothrix cholodnii SP-6 6160687 YP_001793244.1 CDS Lcho_4228 NC_010524.1 4739007 4739672 R PFAM: DSBA oxidoreductase; KEGG: mpt:Mpe_A0151 thiol:disulfide interchange protein; DSBA oxidoreductase complement(4739007..4739672) Leptothrix cholodnii SP-6 6160688 YP_001793245.1 CDS Lcho_4229 NC_010524.1 4739710 4740351 R PFAM: Sporulation domain protein; KEGG: mpt:Mpe_A0152 hypothetical protein; sporulation domain-containing protein complement(4739710..4740351) Leptothrix cholodnii SP-6 6160689 YP_001793246.1 CDS argS NC_010524.1 4740380 4742065 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(4740380..4742065) Leptothrix cholodnii SP-6 6160897 YP_001793247.1 CDS Lcho_4231 NC_010524.1 4742204 4743538 D PFAM: cyclic nucleotide-binding; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mpt:Mpe_A0154 serine/threonine-protein kinase; cyclic nucleotide-binding protein 4742204..4743538 Leptothrix cholodnii SP-6 6160898 YP_001793248.1 CDS Lcho_4232 NC_010524.1 4743677 4743955 D KEGG: bra:BRADO3400 conserved hypothetical protein; putative signal peptide; putative signal peptide 4743677..4743955 Leptothrix cholodnii SP-6 6160899 YP_001793249.1 CDS Lcho_4233 NC_010524.1 4744047 4744487 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A0307 putative transmembrane protein; hypothetical protein 4744047..4744487 Leptothrix cholodnii SP-6 6160900 YP_001793250.1 CDS Lcho_4234 NC_010524.1 4744612 4745691 D PFAM: VanZ family protein; KEGG: mpt:Mpe_A0308 hypothetical protein; VanZ family protein 4744612..4745691 Leptothrix cholodnii SP-6 6160901 YP_001793251.1 CDS Lcho_4235 NC_010524.1 4745688 4746083 D KEGG: pol:Bpro_0248 ferredoxin-like; ferredoxin-like protein 4745688..4746083 Leptothrix cholodnii SP-6 6160902 YP_001793252.1 CDS Lcho_4236 NC_010524.1 4746093 4746710 D KEGG: mpt:Mpe_A0310 hypothetical protein; hypothetical protein 4746093..4746710 Leptothrix cholodnii SP-6 6160903 YP_001793253.1 CDS Lcho_4237 NC_010524.1 4746863 4748032 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: mpt:Mpe_A0311 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 4746863..4748032 Leptothrix cholodnii SP-6 6161126 YP_001793254.1 CDS Lcho_4238 NC_010524.1 4748123 4749034 D PFAM: aminotransferase class IV; KEGG: mpt:Mpe_A0312 putative class IV aminotransferase; class IV aminotransferase 4748123..4749034 Leptothrix cholodnii SP-6 6161127 YP_001793255.1 CDS Lcho_4239 NC_010524.1 4749061 4749336 D PFAM: protein of unknown function DUF493; KEGG: bbr:BB0170 hypothetical protein; hypothetical protein 4749061..4749336 Leptothrix cholodnii SP-6 6161128 YP_001793256.1 CDS Lcho_4240 NC_010524.1 4749358 4749567 R KEGG: pna:Pnap_1054 hypothetical protein; hypothetical protein complement(4749358..4749567) Leptothrix cholodnii SP-6 6161129 YP_001793257.1 CDS Lcho_4241 NC_010524.1 4749716 4750474 R KEGG: vei:Veis_1576 integral membrane protein; integral membrane protein complement(4749716..4750474) Leptothrix cholodnii SP-6 6161130 YP_001793258.1 CDS Lcho_4242 NC_010524.1 4750704 4751555 D PFAM: Metal-dependent hydrolase HDOD; KEGG: mpt:Mpe_A3409 hypothetical protein; metal-dependent hydrolase HDOD 4750704..4751555 Leptothrix cholodnii SP-6 6161131 YP_001793259.1 CDS Lcho_4243 NC_010524.1 4751566 4752096 R KEGG: jan:Jann_0111 hypothetical protein; hypothetical protein complement(4751566..4752096) Leptothrix cholodnii SP-6 6161132 YP_001793260.1 CDS Lcho_4244 NC_010524.1 4752166 4753149 R KEGG: pna:Pnap_0435 putative lipase transmembrane protein; putative lipase transmembrane protein complement(4752166..4753149) Leptothrix cholodnii SP-6 6161021 YP_001793261.1 CDS Lcho_4245 NC_010524.1 4753188 4753607 R PFAM: nuclear protein SET; KEGG: mpt:Mpe_A0045 hypothetical protein; nuclear protein SET complement(4753188..4753607) Leptothrix cholodnii SP-6 6161022 YP_001793262.1 CDS Lcho_4246 NC_010524.1 4754392 4757106 D PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_2352 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4754392..4757106 Leptothrix cholodnii SP-6 6161023 YP_001793263.1 CDS Lcho_4247 NC_010524.1 4757232 4758209 D KEGG: dac:Daci_2447 hypothetical protein; hypothetical protein 4757232..4758209 Leptothrix cholodnii SP-6 6161024 YP_001793264.1 CDS Lcho_4248 NC_010524.1 4758202 4759860 D KEGG: azo:azo0658 hypothetical membrane protein; hypothetical protein 4758202..4759860 Leptothrix cholodnii SP-6 6161025 YP_001793265.1 CDS Lcho_4249 NC_010524.1 4759861 4760079 R KEGG: reh:H16_B2541 hypothetical protein; hypothetical protein complement(4759861..4760079) Leptothrix cholodnii SP-6 6161026 YP_001793266.1 CDS Lcho_4250 NC_010524.1 4760158 4761189 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: rfr:Rfer_2380 isocitrate dehydrogenase (NAD+); isocitrate dehydrogenase (NAD(+)) complement(4760158..4761189) Leptothrix cholodnii SP-6 6161027 YP_001793267.1 CDS psd NC_010524.1 4761317 4762174 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(4761317..4762174) Leptothrix cholodnii SP-6 6163647 YP_001793268.1 CDS Lcho_4252 NC_010524.1 4762315 4762626 D PFAM: protein of unknown function DUF883 ElaB; KEGG: rfr:Rfer_2238 protein of unknown function DUF883, ElaB; hypothetical protein 4762315..4762626 Leptothrix cholodnii SP-6 6163648 YP_001793269.1 CDS Lcho_4253 NC_010524.1 4762687 4763076 D KEGG: rfr:Rfer_2237 putative transmembrane protein; putative transmembrane protein 4762687..4763076 Leptothrix cholodnii SP-6 6163649 YP_001793270.1 CDS Lcho_4254 NC_010524.1 4763073 4763504 D hypothetical protein 4763073..4763504 Leptothrix cholodnii SP-6 6163650 YP_001793271.1 CDS Lcho_4255 NC_010524.1 4763525 4763956 R PFAM: protein of unknown function DUF59; hypothetical protein complement(4763525..4763956) Leptothrix cholodnii SP-6 6163651 YP_001793272.1 CDS Lcho_4256 NC_010524.1 4764026 4764421 R PFAM: protein of unknown function DUF59; KEGG: mag:amb1263 predicted metal-sulfur cluster biosynthetic enzyme; hypothetical protein complement(4764026..4764421) Leptothrix cholodnii SP-6 6163652 YP_001793273.1 CDS Lcho_4257 NC_010524.1 4764629 4767652 D KEGG: rfr:Rfer_2197 ribonucleotide reductase large subunit; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; ribonucleoside-diphosphate reductase 4764629..4767652 Leptothrix cholodnii SP-6 6163653 YP_001793274.1 CDS Lcho_4258 NC_010524.1 4767652 4768050 D KEGG: bch:Bcen2424_3352 PilT protein domain protein; PilT domain-containing protein 4767652..4768050 Leptothrix cholodnii SP-6 6163326 YP_001793275.1 CDS Lcho_4259 NC_010524.1 4768066 4768293 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bch:Bcen2424_3351 transcriptional regulator, AbrB family; AbrB family transcriptional regulator complement(4768066..4768293) Leptothrix cholodnii SP-6 6163327 YP_001793276.1 CDS Lcho_4260 NC_010524.1 4768472 4769455 D PFAM: aldo/keto reductase; KEGG: sme:SMa0563 aldehyde or keto oxidase, probable; aldo/keto reductase 4768472..4769455 Leptothrix cholodnii SP-6 6163328 YP_001793277.1 CDS Lcho_4261 NC_010524.1 4769457 4770284 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: ent:Ent638_1703 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 4769457..4770284 Leptothrix cholodnii SP-6 6163329 YP_001793278.1 CDS Lcho_4262 NC_010524.1 4770291 4771121 R KEGG: bra:BRADO0602 hypothetical protein; hypothetical protein complement(4770291..4771121) Leptothrix cholodnii SP-6 6163330 YP_001793279.1 CDS Lcho_4263 NC_010524.1 4771198 4772229 D KEGG: rpe:RPE_4585 hypothetical protein; hypothetical protein 4771198..4772229 Leptothrix cholodnii SP-6 6163331 YP_001793280.1 CDS Lcho_4264 NC_010524.1 4772223 4773155 R PFAM: protein of unknown function DUF344; KEGG: mpt:Mpe_A1572 hypothetical protein; hypothetical protein complement(4772223..4773155) Leptothrix cholodnii SP-6 6162240 YP_001793281.1 CDS Lcho_4265 NC_010524.1 4773286 4773417 D hypothetical protein 4773286..4773417 Leptothrix cholodnii SP-6 6162241 YP_001793282.1 CDS Lcho_4266 NC_010524.1 4773453 4774676 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A2069 putative HlyD family secretion protein; RND family efflux transporter MFP subunit complement(4773453..4774676) Leptothrix cholodnii SP-6 6162242 YP_001793283.1 CDS Lcho_4267 NC_010524.1 4774685 4777066 R PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A2068 hypothetical protein; hypothetical protein complement(4774685..4777066) Leptothrix cholodnii SP-6 6162243 YP_001793284.1 CDS Lcho_4268 NC_010524.1 4777083 4777799 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2067 ABC-type anti-microbial peptide transporter, ATP-binding protein; ABC transporter-like protein complement(4777083..4777799) Leptothrix cholodnii SP-6 6162244 YP_001793285.1 CDS Lcho_4269 NC_010524.1 4777873 4778766 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_0733 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4777873..4778766) Leptothrix cholodnii SP-6 6162245 YP_001793286.1 CDS Lcho_4270 NC_010524.1 4778928 4779677 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dac:Daci_0732 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4778928..4779677 Leptothrix cholodnii SP-6 6162246 YP_001793287.1 CDS Lcho_4271 NC_010524.1 4779722 4780714 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit Dctp 4779722..4780714 Leptothrix cholodnii SP-6 6161219 YP_001793288.1 CDS Lcho_4272 NC_010524.1 4780777 4781304 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dac:Daci_0730 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter DctQ 4780777..4781304 Leptothrix cholodnii SP-6 6161220 YP_001793289.1 CDS Lcho_4273 NC_010524.1 4781329 4782588 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dac:Daci_0729 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 4781329..4782588 Leptothrix cholodnii SP-6 6161221 YP_001793290.1 CDS Lcho_4274 NC_010524.1 4782621 4783484 D PFAM: Transketolase domain protein; KEGG: pol:Bpro_1461 transketolase-like; transketolase domain-containing protein 4782621..4783484 Leptothrix cholodnii SP-6 6161222 YP_001793291.1 CDS Lcho_4275 NC_010524.1 4783481 4784497 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: dac:Daci_0727 transketolase central region; transketolase central region 4783481..4784497 Leptothrix cholodnii SP-6 6161223 YP_001793292.1 CDS Lcho_4276 NC_010524.1 4784614 4785885 D KEGG: eba:ebA6307 O-acetylhomoserine sulfhydrylase, gene: MetY; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 4784614..4785885 Leptothrix cholodnii SP-6 6161224 YP_001793293.1 CDS Lcho_4277 NC_010524.1 4785896 4786141 R hypothetical protein complement(4785896..4786141) Leptothrix cholodnii SP-6 6161225 YP_001793294.1 CDS Lcho_4278 NC_010524.1 4786796 4787323 D PFAM: Phosphoglycerate mutase; KEGG: rca:Rcas_1740 phosphohistidine phosphatase, SixA; putative phosphohistidine phosphatase SixA 4786796..4787323 Leptothrix cholodnii SP-6 6160625 YP_001793295.1 CDS Lcho_4279 NC_010524.1 4787414 4788661 D PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_2551 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4787414..4788661 Leptothrix cholodnii SP-6 6160626 YP_001793296.1 CDS Lcho_4280 NC_010524.1 4788753 4790942 D KEGG: pna:Pnap_3987 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane 4788753..4790942 Leptothrix cholodnii SP-6 6160627 YP_001793297.1 CDS Lcho_4281 NC_010524.1 4790987 4792531 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_4100 periplasmic sensor signal transduction histidine kinase; histidine kinase 4790987..4792531 Leptothrix cholodnii SP-6 6160628 YP_001793298.1 CDS Lcho_4282 NC_010524.1 4792528 4793181 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pol:Bpro_4101 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4792528..4793181 Leptothrix cholodnii SP-6 6160629 YP_001793299.1 CDS Lcho_4283 NC_010524.1 4793282 4793623 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: dar:Daro_0570 PhnA protein; alkylphosphonate utilization operon protein PhnA 4793282..4793623 Leptothrix cholodnii SP-6 6160630 YP_001793300.1 CDS Lcho_4284 NC_010524.1 4793681 4794406 D PFAM: DTW domain containing protein; KEGG: rfr:Rfer_3956 DTW; DTW domain-containing protein 4793681..4794406 Leptothrix cholodnii SP-6 6160631 YP_001793301.1 CDS Lcho_4285 NC_010524.1 4795520 4795618 R hypothetical protein complement(4795520..4795618) Leptothrix cholodnii SP-6 6161226 YP_001793302.1 CDS Lcho_4286 NC_010524.1 4795843 4797186 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cch:Cag_1392 putative type II DNA modification enzyme (methyltransferase); DNA methylase N-4/N-6 domain-containing protein 4795843..4797186 Leptothrix cholodnii SP-6 6161227 YP_001793303.1 CDS Lcho_4287 NC_010524.1 4797183 4798082 R hypothetical protein complement(4797183..4798082) Leptothrix cholodnii SP-6 6161228 YP_001793304.1 CDS Lcho_4288 NC_010524.1 4798140 4801316 R PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ade:Adeh_3869 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(4798140..4801316) Leptothrix cholodnii SP-6 6161229 YP_001793305.1 CDS Lcho_4289 NC_010524.1 4801539 4801886 D KEGG: pfo:Pfl_3518 hypothetical protein; hypothetical protein 4801539..4801886 Leptothrix cholodnii SP-6 6161230 YP_001793306.1 CDS Lcho_4290 NC_010524.1 4802062 4802706 D hypothetical protein 4802062..4802706 Leptothrix cholodnii SP-6 6161231 YP_001793307.1 CDS Lcho_4291 NC_010524.1 4802808 4803218 D KEGG: dar:Daro_0419 hypothetical protein; hypothetical protein 4802808..4803218 Leptothrix cholodnii SP-6 6161232 YP_001793308.1 CDS Lcho_4292 NC_010524.1 4803649 4804227 R KEGG: rme:Rmet_2169 hypothetical protein; hypothetical protein complement(4803649..4804227) Leptothrix cholodnii SP-6 6161776 YP_001793309.1 CDS Lcho_4293 NC_010524.1 4804227 4804823 R KEGG: pst:PSPTO_0023 hypothetical protein; hypothetical protein complement(4804227..4804823) Leptothrix cholodnii SP-6 6161777 YP_001793310.1 CDS Lcho_4294 NC_010524.1 4804820 4805944 R PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_0022 DNA-binding protein; XRE family transcriptional regulator complement(4804820..4805944) Leptothrix cholodnii SP-6 6161778 YP_001793311.1 CDS Lcho_4295 NC_010524.1 4806060 4806371 D KEGG: rle:pRL100468 hypothetical protein; hypothetical protein 4806060..4806371 Leptothrix cholodnii SP-6 6161779 YP_001793312.1 CDS Lcho_4296 NC_010524.1 4806411 4807298 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1765 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4806411..4807298) Leptothrix cholodnii SP-6 6161780 YP_001793313.1 CDS Lcho_4297 NC_010524.1 4807434 4808399 D PFAM: conserved hypothetical protein; KEGG: dac:Daci_0295 hypothetical protein; hypothetical protein 4807434..4808399 Leptothrix cholodnii SP-6 6161781 YP_001793314.1 CDS Lcho_4298 NC_010524.1 4808416 4809255 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: dac:Daci_0581 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(4808416..4809255) Leptothrix cholodnii SP-6 6161782 YP_001793315.1 CDS Lcho_4299 NC_010524.1 4809470 4810435 D PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4534 beta-lactamase-like; beta-lactamase domain-containing protein 4809470..4810435 Leptothrix cholodnii SP-6 6162082 YP_001793316.1 CDS Lcho_4300 NC_010524.1 4810441 4812177 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_4535 hypothetical protein; FAD-dependent oxidoreductase 4810441..4812177 Leptothrix cholodnii SP-6 6162083 YP_001793317.1 CDS Lcho_4301 NC_010524.1 4812197 4812415 D KEGG: pol:Bpro_4536 hypothetical protein; hypothetical protein 4812197..4812415 Leptothrix cholodnii SP-6 6162084 YP_001793318.1 CDS Lcho_4302 NC_010524.1 4812429 4813760 D An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 4812429..4813760 Leptothrix cholodnii SP-6 6162085 YP_001793319.1 CDS Lcho_4303 NC_010524.1 4813757 4815094 D KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase 4813757..4815094 Leptothrix cholodnii SP-6 6162086 YP_001793320.1 CDS Lcho_4304 NC_010524.1 4815082 4816059 R PFAM: protein of unknown function DUF182; KEGG: aav:Aave_3933 protein of unknown function DUF182; hypothetical protein complement(4815082..4816059) Leptothrix cholodnii SP-6 6162087 YP_001793321.1 CDS Lcho_4305 NC_010524.1 4816065 4818302 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rle:RL2500 putative isoquinoline 1-oxidoreductase beta subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein complement(4816065..4818302) Leptothrix cholodnii SP-6 6162088 YP_001793322.1 CDS Lcho_4306 NC_010524.1 4818314 4818787 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rle:RL2499 putative isoquinoline 1-oxidoreductase alpha subunit; 2Fe-2S iron-sulfur cluster-binding domain-containing protein complement(4818314..4818787) Leptothrix cholodnii SP-6 6163083 YP_001793323.1 CDS Lcho_4307 NC_010524.1 4819008 4819916 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pfl:PFL_2378 transcriptional regulator, AraC family; AraC family transcriptional regulator 4819008..4819916 Leptothrix cholodnii SP-6 6163084 YP_001793324.1 CDS Lcho_4308 NC_010524.1 4820037 4820600 R TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: mpt:Mpe_A1506 hypothetical protein; phasin family protein complement(4820037..4820600) Leptothrix cholodnii SP-6 6163085 YP_001793325.1 CDS Lcho_4309 NC_010524.1 4820933 4821865 D PFAM: pseudouridine synthase; KEGG: mms:mma_3511 RNA pseudouridylate synthase family protein; pseudouridine synthase 4820933..4821865 Leptothrix cholodnii SP-6 6163086 YP_001793326.1 CDS Lcho_4310 NC_010524.1 4821875 4822885 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: vei:Veis_3569 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(4821875..4822885) Leptothrix cholodnii SP-6 6163087 YP_001793327.1 CDS Lcho_4311 NC_010524.1 4823011 4824237 D KEGG: rfr:Rfer_2773 hypothetical protein; putative metal dependent phosphohydrolase 4823011..4824237 Leptothrix cholodnii SP-6 6163088 YP_001793328.1 CDS Lcho_4312 NC_010524.1 4824238 4824753 R KEGG: reu:Reut_B5395 probable transmembrane protein; putative transmembrane protein complement(4824238..4824753) Leptothrix cholodnii SP-6 6163089 YP_001793329.1 CDS Lcho_4313 NC_010524.1 4824975 4825997 D PFAM: peptidase M12A astacin; peptidase domain protein; SMART: peptidase metallopeptidase; KEGG: fgr:FG08198.1 hypothetical protein; peptidase domain-containing protein 4824975..4825997 Leptothrix cholodnii SP-6 6163096 YP_001793330.1 CDS Lcho_4314 NC_010524.1 4826020 4826937 R KEGG: mpt:Mpe_A1035 hypothetical protein; hypothetical protein complement(4826020..4826937) Leptothrix cholodnii SP-6 6163097 YP_001793331.1 CDS Lcho_4315 NC_010524.1 4826967 4828187 R PFAM: glucose sorbosone dehydrogenase; KEGG: mpt:Mpe_A2752 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase complement(4826967..4828187) Leptothrix cholodnii SP-6 6163098 YP_001793332.1 CDS Lcho_4316 NC_010524.1 4828399 4829163 D PFAM: inositol monophosphatase; KEGG: smd:Smed_3968 inositol-phosphate phosphatase; inositol-phosphate phosphatase 4828399..4829163 Leptothrix cholodnii SP-6 6163099 YP_001793333.1 CDS Lcho_4317 NC_010524.1 4829200 4830231 D PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMb20365 putative ABC transporter iron-binding protein; extracellular solute-binding protein 4829200..4830231 Leptothrix cholodnii SP-6 6163100 YP_001793334.1 CDS Lcho_4318 NC_010524.1 4830228 4832075 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_1364 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4830228..4832075 Leptothrix cholodnii SP-6 6163101 YP_001793335.1 CDS Lcho_4319 NC_010524.1 4832077 4833171 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: oan:Oant_3843 ABC transporter related; ABC transporter-like protein 4832077..4833171 Leptothrix cholodnii SP-6 6163102 YP_001793336.1 CDS Lcho_4320 NC_010524.1 4833283 4834665 D KEGG: bxe:Bxe_B2084 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; beta-galactosidase 4833283..4834665 Leptothrix cholodnii SP-6 6161198 YP_001793337.1 CDS Lcho_4321 NC_010524.1 4834755 4835984 D PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_B2083 ABC sugar transporter, periplasmic ligand binding protein; extracellular solute-binding protein 4834755..4835984 Leptothrix cholodnii SP-6 6161199 YP_001793338.1 CDS Lcho_4322 NC_010524.1 4836046 4836960 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1109 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4836046..4836960 Leptothrix cholodnii SP-6 6161200 YP_001793339.1 CDS Lcho_4323 NC_010524.1 4836957 4837895 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B2081 ABC sugar transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein 4836957..4837895 Leptothrix cholodnii SP-6 6161201 YP_001793340.1 CDS Lcho_4324 NC_010524.1 4837927 4839012 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1107 ABC transporter related; ABC transporter-like protein 4837927..4839012 Leptothrix cholodnii SP-6 6161202 YP_001793341.1 CDS Lcho_4325 NC_010524.1 4839058 4840113 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_1112 transcriptional regulator, LacI family; LacI family transcriptional regulator 4839058..4840113 Leptothrix cholodnii SP-6 6161203 YP_001793342.1 CDS Lcho_4326 NC_010524.1 4840192 4841265 D PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: smd:Smed_2952 oxidoreductase domain protein; oxidoreductase domain-containing protein 4840192..4841265 Leptothrix cholodnii SP-6 6161204 YP_001793343.1 CDS Lcho_4327 NC_010524.1 4841281 4842030 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_982 hypothetical protein; xylose isomerase domain-containing protein 4841281..4842030 Leptothrix cholodnii SP-6 6164053 YP_001793344.1 CDS Lcho_4328 NC_010524.1 4842049 4843107 D PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: bra:BRADO0446 conserved hypothetical protein; putative xylose isomerase-like; xylose isomerase domain-containing protein 4842049..4843107 Leptothrix cholodnii SP-6 6164054 YP_001793345.1 CDS Lcho_4329 NC_010524.1 4843130 4844293 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bxe:Bxe_A3671 putative oxidoreductase; oxidoreductase domain-containing protein 4843130..4844293 Leptothrix cholodnii SP-6 6164055 YP_001793346.1 CDS Lcho_4330 NC_010524.1 4844317 4846827 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: ret:RHE_PF00473 beta-glucosidase protein; glycoside hydrolase family 3 4844317..4846827 Leptothrix cholodnii SP-6 6164056 YP_001793347.1 CDS Lcho_4331 NC_010524.1 4846854 4848458 R PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: ajs:Ajs_3664 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4846854..4848458) Leptothrix cholodnii SP-6 6164057 YP_001793348.1 CDS Lcho_4332 NC_010524.1 4848568 4849770 D PFAM: major facilitator superfamily MFS_1; KEGG: rle:pRL120185 putative transmembrane transporter; major facilitator transporter 4848568..4849770 Leptothrix cholodnii SP-6 6164058 YP_001793349.1 CDS Lcho_4333 NC_010524.1 4849893 4851338 D PFAM: RES domain protein; KEGG: nha:Nham_1974 hypothetical protein; RES domain-containing protein 4849893..4851338 Leptothrix cholodnii SP-6 6164059 YP_001793350.1 CDS Lcho_4334 NC_010524.1 4851406 4851825 R PFAM: PilT protein domain protein; KEGG: eba:ebA3350 plasmid stability protein; PilT domain-containing protein complement(4851406..4851825) Leptothrix cholodnii SP-6 6164000 YP_001793351.1 CDS Lcho_4335 NC_010524.1 4851822 4852076 R KEGG: vei:Veis_3768 plasmid stability protein StbC; plasmid stability protein StbC complement(4851822..4852076) Leptothrix cholodnii SP-6 6164001 YP_001793352.1 CDS Lcho_4336 NC_010524.1 4852240 4852899 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_B3694 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4852240..4852899 Leptothrix cholodnii SP-6 6164002 YP_001793353.1 CDS Lcho_4337 NC_010524.1 4852915 4853565 D PFAM: Negative transcriptional regulator; KEGG: rfr:Rfer_3387 negative transcriptional regulator; FMN-binding negative transcriptional regulator 4852915..4853565 Leptothrix cholodnii SP-6 6164003 YP_001793354.1 CDS Lcho_4338 NC_010524.1 4853580 4854950 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bra:BRADO2304 C4-dicarboxylate transport transcriptional regulatory protein (response regulator in two-component reguatory system); two component sigma-54 specific Fis family transcriptional regulator complement(4853580..4854950) Leptothrix cholodnii SP-6 6164004 YP_001793355.1 CDS Lcho_4339 NC_010524.1 4854954 4856756 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:blr3730 two-component hybrid sensor and regulator; histidine kinase complement(4854954..4856756) Leptothrix cholodnii SP-6 6164005 YP_001793356.1 CDS Lcho_4340 NC_010524.1 4856824 4858167 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(4856824..4858167) Leptothrix cholodnii SP-6 6164006 YP_001793357.1 CDS Lcho_4341 NC_010524.1 4858580 4859770 D PFAM: major facilitator superfamily MFS_1; KEGG: vei:Veis_1471 major facilitator superfamily MFS_1; major facilitator transporter 4858580..4859770 Leptothrix cholodnii SP-6 6164039 YP_001793358.1 CDS Lcho_4342 NC_010524.1 4859783 4860607 R PFAM: protein of unknown function DUF81; KEGG: bpt:Bpet2726 putative integral membrane protein; hypothetical protein complement(4859783..4860607) Leptothrix cholodnii SP-6 6164040 YP_001793359.1 CDS Lcho_4343 NC_010524.1 4860772 4861428 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_3629 transcriptional regulator, GntR family; GntR family transcriptional regulator 4860772..4861428 Leptothrix cholodnii SP-6 6164041 YP_001793360.1 CDS Lcho_4344 NC_010524.1 4861441 4862352 R PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rme:Rmet_3634 ornithine cyclodeaminase/mu-crystallin; ornithine cyclodeaminase/mu-crystallin complement(4861441..4862352) Leptothrix cholodnii SP-6 6164042 YP_001793361.1 CDS Lcho_4345 NC_010524.1 4862400 4863128 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_3629 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4862400..4863128) Leptothrix cholodnii SP-6 6164043 YP_001793362.1 CDS Lcho_4346 NC_010524.1 4863125 4863880 R PFAM: protein of unknown function DUF81; KEGG: reh:H16_B1882 hypothetical membrane spanning protein; hypothetical protein complement(4863125..4863880) Leptothrix cholodnii SP-6 6164044 YP_001793363.1 CDS Lcho_4347 NC_010524.1 4863900 4864235 R PFAM: ferredoxin; KEGG: reh:H16_B1886 ferredoxin; ferredoxin complement(4863900..4864235) Leptothrix cholodnii SP-6 6164045 YP_001793364.1 CDS Lcho_4348 NC_010524.1 4864247 4864543 R KEGG: rme:Rmet_3637 hypothetical protein; hypothetical protein complement(4864247..4864543) Leptothrix cholodnii SP-6 6163962 YP_001793365.1 CDS Lcho_4349 NC_010524.1 4864590 4864925 R PFAM: ferredoxin; KEGG: reu:Reut_B3759 ferredoxin; ferredoxin complement(4864590..4864925) Leptothrix cholodnii SP-6 6163963 YP_001793366.1 CDS Lcho_4350 NC_010524.1 4865298 4866029 D PFAM: TENA/THI-4 domain protein; KEGG: reu:Reut_B3762 coenzyme PQQ synthesis C; TENA/THI-4 domain-containing protein 4865298..4866029 Leptothrix cholodnii SP-6 6163964 YP_001793367.1 CDS Lcho_4351 NC_010524.1 4866095 4867570 D PFAM: Aldehyde Dehydrogenase_; KEGG: reu:Reut_B3763 aldehyde dehydrogenase; aldehyde dehydrogenase 4866095..4867570 Leptothrix cholodnii SP-6 6163965 YP_001793368.1 CDS Lcho_4352 NC_010524.1 4867598 4868077 D PFAM: protein of unknown function DUF336; KEGG: rme:Rmet_3631 protein of unknown function DUF336; hypothetical protein 4867598..4868077 Leptothrix cholodnii SP-6 6163966 YP_001793369.1 CDS Lcho_4353 NC_010524.1 4868103 4869098 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: reh:H16_B1877 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding subunit 4868103..4869098 Leptothrix cholodnii SP-6 6163967 YP_001793370.1 CDS Lcho_4354 NC_010524.1 4869533 4871062 D KEGG: reh:H16_B1883 hypothetical membrane spanning protein; hypothetical protein 4869533..4871062 Leptothrix cholodnii SP-6 6160943 YP_001793371.1 CDS Lcho_4355 NC_010524.1 4871068 4872552 D PFAM: gamma-glutamyltranspeptidase; KEGG: tth:TTC0403 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 4871068..4872552 Leptothrix cholodnii SP-6 6160944 YP_001793372.1 CDS Lcho_4356 NC_010524.1 4872594 4873211 D PFAM: Glutathione S-transferase domain; KEGG: pol:Bpro_2015 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 4872594..4873211 Leptothrix cholodnii SP-6 6160945 YP_001793373.1 CDS Lcho_4357 NC_010524.1 4873225 4874208 R PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_2897 probable oxidoreductase; 2OG-Fe(II) oxygenase complement(4873225..4874208) Leptothrix cholodnii SP-6 6160946 YP_001793374.1 CDS Lcho_4358 NC_010524.1 4874421 4877429 D KEGG: pna:Pnap_3261 hypothetical protein; hypothetical protein 4874421..4877429 Leptothrix cholodnii SP-6 6160947 YP_001793375.1 CDS Lcho_4359 NC_010524.1 4877426 4879102 D PFAM: OmpA/MotB domain protein; KEGG: pmy:Pmen_2437 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4877426..4879102 Leptothrix cholodnii SP-6 6160948 YP_001793376.1 CDS Lcho_4360 NC_010524.1 4879175 4880344 D PFAM: glutamine amidotransferase class-I; DGPFAETKE family protein; KEGG: tbd:Tbd_0876 hypothetical protein; DGPFAETKE family protein 4879175..4880344 Leptothrix cholodnii SP-6 6160949 YP_001793377.1 CDS Lcho_4361 NC_010524.1 4880434 4880847 D PFAM: DGPFAETKE family protein; KEGG: mpt:Mpe_A0021 hypothetical protein; DGPFAETKE family protein 4880434..4880847 Leptothrix cholodnii SP-6 6161133 YP_001793378.1 CDS Lcho_4362 NC_010524.1 4880884 4881306 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A0020 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 4880884..4881306 Leptothrix cholodnii SP-6 6161134 YP_001793379.1 CDS Lcho_4363 NC_010524.1 4881296 4882582 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B0234 unknown sigma factor; RNA polymerase ECF-subfamily sigma factor 4881296..4882582 Leptothrix cholodnii SP-6 6161135 YP_001793380.1 CDS Lcho_4364 NC_010524.1 4882583 4882921 R KEGG: mpt:Mpe_B0622 hypothetical protein; hypothetical protein complement(4882583..4882921) Leptothrix cholodnii SP-6 6161136 YP_001793381.1 CDS Lcho_4365 NC_010524.1 4883128 4884381 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cvi:CV_2841 ATP-dependent RNA helicase; DEAD/DEAH box helicase 4883128..4884381 Leptothrix cholodnii SP-6 6161137 YP_001793382.1 CDS Lcho_4366 NC_010524.1 4884416 4885141 D KEGG: pna:Pnap_0222 putative esterase; putative esterase 4884416..4885141 Leptothrix cholodnii SP-6 6161138 YP_001793383.1 CDS Lcho_4367 NC_010524.1 4885138 4885632 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: syx:SynWH7803_0016 peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase 4885138..4885632 Leptothrix cholodnii SP-6 6161139 YP_001793384.1 CDS Lcho_4368 NC_010524.1 4885633 4886400 R PFAM: AAA-4 family protein; KEGG: tbd:Tbd_1077 predicted transcriptional regulator; putative transcriptional regulator complement(4885633..4886400) Leptothrix cholodnii SP-6 6161178 YP_001793385.1 CDS Lcho_4369 NC_010524.1 4886403 4887158 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psa:PST_2883 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(4886403..4887158) Leptothrix cholodnii SP-6 6161179 YP_001793386.1 CDS Lcho_4370 NC_010524.1 4887215 4889119 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aav:Aave_0105 radical SAM domain protein; radical SAM domain-containing protein 4887215..4889119 Leptothrix cholodnii SP-6 6161180 YP_001793387.1 CDS Lcho_4371 NC_010524.1 4889146 4890915 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_3093 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(4889146..4890915) Leptothrix cholodnii SP-6 6161181 YP_001793388.1 CDS Lcho_4372 NC_010524.1 4890909 4891037 R hypothetical protein complement(4890909..4891037) Leptothrix cholodnii SP-6 6161182 YP_001793389.1 CDS Lcho_4373 NC_010524.1 4891326 4892645 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cvi:CV_4003 ammonium transporter; ammonium transporter 4891326..4892645 Leptothrix cholodnii SP-6 6161183 YP_001793390.1 CDS Lcho_4374 NC_010524.1 4892676 4892957 D KEGG: rme:Rmet_1299 hypothetical protein; hypothetical protein 4892676..4892957 Leptothrix cholodnii SP-6 6161184 YP_001793391.1 CDS Lcho_4375 NC_010524.1 4892957 4893532 D PFAM: MOSC domain containing protein; KEGG: mpt:Mpe_A3716 hypothetical protein; MOSC domain-containing protein 4892957..4893532 Leptothrix cholodnii SP-6 6161028 YP_001793392.1 CDS Lcho_4376 NC_010524.1 4893573 4895552 D KEGG: mxa:MXAN_5509 hypothetical protein; superfamily I DNA/RNA helicase 4893573..4895552 Leptothrix cholodnii SP-6 6161029 YP_001793393.1 CDS Lcho_4377 NC_010524.1 4895549 4896250 R PFAM: phospholipase/Carboxylesterase; KEGG: mpt:Mpe_A0054 carboxylesterase; phospholipase/carboxylesterase complement(4895549..4896250) Leptothrix cholodnii SP-6 6161030 YP_001793394.1 CDS Lcho_4378 NC_010524.1 4896304 4896996 D PFAM: dienelactone hydrolase; KEGG: rso:RS04764 putative transmembrane protein; carboxymethylenebutenolidase 4896304..4896996 Leptothrix cholodnii SP-6 6161031 YP_001793395.1 CDS Lcho_4379 NC_010524.1 4897025 4898086 R PFAM: Catalase domain protein; KEGG: mpt:Mpe_A1580 putative catalase; catalase complement(4897025..4898086) Leptothrix cholodnii SP-6 6161032 YP_001793396.1 CDS Lcho_4380 NC_010524.1 4898598 4899362 R PFAM: Rare lipoprotein A; KEGG: mxa:MXAN_3573 putative lipoprotein; rare lipoprotein A complement(4898598..4899362) Leptothrix cholodnii SP-6 6161033 YP_001793397.1 CDS Lcho_4381 NC_010524.1 4899782 4901035 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: dar:Daro_2873 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4899782..4901035 Leptothrix cholodnii SP-6 6161034 YP_001793398.1 CDS Lcho_4382 NC_010524.1 4901216 4903453 D KEGG: pna:Pnap_3680 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 4901216..4903453 Leptothrix cholodnii SP-6 6161100 YP_001793399.1 CDS Lcho_4383 NC_010524.1 4903654 4904367 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_3416 conserved hypothetical protein, potential methyltransferase; type 11 methyltransferase 4903654..4904367 Leptothrix cholodnii SP-6 6161101 YP_001793400.1 CDS trmE NC_010524.1 4904459 4905898 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4904459..4905898) Leptothrix cholodnii SP-6 6161102 YP_001793401.1 CDS Lcho_4385 NC_010524.1 4906314 4907993 R PFAM: 60 kDa inner membrane insertion protein; KEGG: mpt:Mpe_A3825 60kDa inner-membrane protein; 60 kDa inner membrane insertion protein complement(4906314..4907993) Leptothrix cholodnii SP-6 6161103 YP_001793402.1 CDS Lcho_4386 NC_010524.1 4907996 4908334 R PFAM: protein of unknown function DUF37; KEGG: dac:Daci_6057 protein of unknown function DUF37; hypothetical protein complement(4907996..4908334) Leptothrix cholodnii SP-6 6161104 YP_001793403.1 CDS Lcho_4387 NC_010524.1 4908454 4908924 R KEGG: mpt:Mpe_A3827 ribonuclease P protein component; hypothetical protein complement(4908454..4908924) Leptothrix cholodnii SP-6 6161105 YP_001793404.1 CDS Lcho_4388 NC_010524.1 4908989 4909123 R PFAM: ribosomal protein L34; KEGG: pna:Pnap_4116 ribosomal protein L34; 50S ribosomal protein L34 complement(4908989..4909123) Leptothrix cholodnii SP-6 6161106 Lcho_R0002 tRNA Lcho_R0002 NC_010524.1 326084 326160 D tRNA-Ile 326084..326160 Leptothrix cholodnii SP-6 6163547 Lcho_R0003 tRNA Lcho_R0003 NC_010524.1 326173 326248 D tRNA-Ala 326173..326248 Leptothrix cholodnii SP-6 6163548 Lcho_R0007 tRNA Lcho_R0007 NC_010524.1 634061 634137 R tRNA-Met complement(634061..634137) Leptothrix cholodnii SP-6 6159886 Lcho_R0008 tRNA Lcho_R0008 NC_010524.1 719695 719779 D tRNA-Leu 719695..719779 Leptothrix cholodnii SP-6 6163898 Lcho_R0009 tRNA Lcho_R0009 NC_010524.1 742421 742508 R tRNA-Ser complement(742421..742508) Leptothrix cholodnii SP-6 6160818 Lcho_R0010 tRNA Lcho_R0010 NC_010524.1 827551 827627 D tRNA-Arg 827551..827627 Leptothrix cholodnii SP-6 6163250 Lcho_R0011 tRNA Lcho_R0011 NC_010524.1 998298 998373 D tRNA-Thr 998298..998373 Leptothrix cholodnii SP-6 6159780 Lcho_R0014 tRNA Lcho_R0014 NC_010524.1 1102755 1102831 D tRNA-Ile 1102755..1102831 Leptothrix cholodnii SP-6 6160241 Lcho_R0015 tRNA Lcho_R0015 NC_010524.1 1102844 1102919 D tRNA-Ala 1102844..1102919 Leptothrix cholodnii SP-6 6160242 Lcho_R0018 tRNA Lcho_R0018 NC_010524.1 1111422 1111496 R tRNA-Val complement(1111422..1111496) Leptothrix cholodnii SP-6 6163122 Lcho_R0019 tRNA Lcho_R0019 NC_010524.1 1392704 1392779 D tRNA-Arg 1392704..1392779 Leptothrix cholodnii SP-6 6161007 Lcho_R0020 tRNA Lcho_R0020 NC_010524.1 1586512 1586596 D tRNA-Leu 1586512..1586596 Leptothrix cholodnii SP-6 6162435 Lcho_R0021 tRNA Lcho_R0021 NC_010524.1 1785328 1785418 D tRNA-Ser 1785328..1785418 Leptothrix cholodnii SP-6 6164090 Lcho_R0022 tRNA Lcho_R0022 NC_010524.1 1804571 1804646 D tRNA-Ala 1804571..1804646 Leptothrix cholodnii SP-6 6161548 Lcho_R0023 tRNA Lcho_R0023 NC_010524.1 1804682 1804757 D tRNA-Glu 1804682..1804757 Leptothrix cholodnii SP-6 6161549 Lcho_R0024 tRNA Lcho_R0024 NC_010524.1 1804819 1804895 D tRNA-Asp 1804819..1804895 Leptothrix cholodnii SP-6 6161550 Lcho_R0025 tRNA Lcho_R0025 NC_010524.1 1804953 1805028 D tRNA-Glu 1804953..1805028 Leptothrix cholodnii SP-6 6163703 Lcho_R0026 tRNA Lcho_R0026 NC_010524.1 1805030 1805106 D tRNA-Asp 1805030..1805106 Leptothrix cholodnii SP-6 6163704 Lcho_R0027 tRNA Lcho_R0027 NC_010524.1 1873004 1873080 D tRNA-Pro 1873004..1873080 Leptothrix cholodnii SP-6 6161292 Lcho_R0028 tRNA Lcho_R0028 NC_010524.1 1873485 1873560 R tRNA-Thr complement(1873485..1873560) Leptothrix cholodnii SP-6 6161293 Lcho_R0029 tRNA Lcho_R0029 NC_010524.1 2057689 2057765 D tRNA-Val 2057689..2057765 Leptothrix cholodnii SP-6 6159834 Lcho_R0030 tRNA Lcho_R0030 NC_010524.1 2067819 2067892 R tRNA-Gly complement(2067819..2067892) Leptothrix cholodnii SP-6 6160151 Lcho_R0031 tRNA Lcho_R0031 NC_010524.1 2090022 2090097 R tRNA-His complement(2090022..2090097) Leptothrix cholodnii SP-6 6159768 Lcho_R0032 tRNA Lcho_R0032 NC_010524.1 2092213 2092288 R tRNA-Val complement(2092213..2092288) Leptothrix cholodnii SP-6 6160198 Lcho_R0033 tRNA Lcho_R0033 NC_010524.1 2103956 2104031 R tRNA-Lys complement(2103956..2104031) Leptothrix cholodnii SP-6 6163694 Lcho_R0034 tRNA Lcho_R0034 NC_010524.1 2104103 2104178 R tRNA-Lys complement(2104103..2104178) Leptothrix cholodnii SP-6 6163695 Lcho_R0035 tRNA Lcho_R0035 NC_010524.1 2104204 2104279 R tRNA-Lys complement(2104204..2104279) Leptothrix cholodnii SP-6 6162545 Lcho_R0036 tRNA Lcho_R0036 NC_010524.1 2398926 2399002 R tRNA-Arg complement(2398926..2399002) Leptothrix cholodnii SP-6 6160582 Lcho_R0037 tRNA Lcho_R0037 NC_010524.1 2422547 2422623 R tRNA-Pro complement(2422547..2422623) Leptothrix cholodnii SP-6 6160667 Lcho_R0038 tRNA Lcho_R0038 NC_010524.1 2590573 2590662 R tRNA-Ser complement(2590573..2590662) Leptothrix cholodnii SP-6 6160087 Lcho_R0039 tRNA Lcho_R0039 NC_010524.1 2770019 2770107 R tRNA-Leu complement(2770019..2770107) Leptothrix cholodnii SP-6 6162552 Lcho_R0040 tRNA Lcho_R0040 NC_010524.1 2770200 2770275 R tRNA-Gly complement(2770200..2770275) Leptothrix cholodnii SP-6 6162553 Lcho_R0041 tRNA Lcho_R0041 NC_010524.1 2770323 2770396 R tRNA-Cys complement(2770323..2770396) Leptothrix cholodnii SP-6 6162554 Lcho_R0042 tRNA Lcho_R0042 NC_010524.1 2770451 2770526 R tRNA-Gly complement(2770451..2770526) Leptothrix cholodnii SP-6 6162502 Lcho_R0043 tRNA Lcho_R0043 NC_010524.1 2776607 2776693 R tRNA-Leu complement(2776607..2776693) Leptothrix cholodnii SP-6 6162167 Lcho_R0044 tRNA Lcho_R0044 NC_010524.1 2838521 2838610 R tRNA-Ser complement(2838521..2838610) Leptothrix cholodnii SP-6 6163559 Lcho_R0046 tRNA Lcho_R0046 NC_010524.1 3076842 3076917 D tRNA-Asn 3076842..3076917 Leptothrix cholodnii SP-6 6162199 Lcho_R0048 tRNA Lcho_R0048 NC_010524.1 3144962 3145046 D tRNA-Leu 3144962..3145046 Leptothrix cholodnii SP-6 6161855 Lcho_R0049 tRNA Lcho_R0049 NC_010524.1 3282870 3282945 D tRNA-Ala 3282870..3282945 Leptothrix cholodnii SP-6 6160602 Lcho_R0050 tRNA Lcho_R0050 NC_010524.1 3495194 3495268 D tRNA-Arg 3495194..3495268 Leptothrix cholodnii SP-6 6161759 Lcho_R0051 tRNA Lcho_R0051 NC_010524.1 3640993 3641069 D tRNA-Pro 3640993..3641069 Leptothrix cholodnii SP-6 6162582 Lcho_R0052 tRNA Lcho_R0052 NC_010524.1 3882681 3882757 D tRNA-Met 3882681..3882757 Leptothrix cholodnii SP-6 6159785 Lcho_R0053 tRNA Lcho_R0053 NC_010524.1 3911431 3911507 D tRNA-Gln 3911431..3911507 Leptothrix cholodnii SP-6 6159981 Lcho_R0054 tRNA Lcho_R0054 NC_010524.1 4334049 4334125 R tRNA-Met complement(4334049..4334125) Leptothrix cholodnii SP-6 6161528 Lcho_R0055 tRNA Lcho_R0055 NC_010524.1 4346669 4346744 R tRNA-Trp complement(4346669..4346744) Leptothrix cholodnii SP-6 6162494 Lcho_R0056 tRNA Lcho_R0056 NC_010524.1 4347999 4348073 R tRNA-Thr complement(4347999..4348073) Leptothrix cholodnii SP-6 6161042 Lcho_R0057 tRNA Lcho_R0057 NC_010524.1 4348137 4348210 R tRNA-Gly complement(4348137..4348210) Leptothrix cholodnii SP-6 6161043 Lcho_R0058 tRNA Lcho_R0058 NC_010524.1 4348334 4348419 R tRNA-Tyr complement(4348334..4348419) Leptothrix cholodnii SP-6 6161044 Lcho_R0059 tRNA Lcho_R0059 NC_010524.1 4481966 4482041 R tRNA-Gly complement(4481966..4482041) Leptothrix cholodnii SP-6 6160829 Lcho_R0060 tRNA Lcho_R0060 NC_010524.1 4482066 4482141 R tRNA-Phe complement(4482066..4482141) Leptothrix cholodnii SP-6 6161402 Lcho_R0001 rRNA Lcho_R0001 NC_010524.1 324492 326011 D 16S ribosomal RNA 324492..326011 Leptothrix cholodnii SP-6 6161501 Lcho_R0004 rRNA Lcho_R0004 NC_010524.1 326579 329462 D 23S ribosomal RNA 326579..329462 Leptothrix cholodnii SP-6 6163549 Lcho_R0005 rRNA Lcho_R0005 NC_010524.1 329610 329722 D 5S ribosomal RNA 329610..329722 Leptothrix cholodnii SP-6 6163550 Lcho_R0013 rRNA Lcho_R0013 NC_010524.1 1101163 1102682 D 16S ribosomal RNA 1101163..1102682 Leptothrix cholodnii SP-6 6160240 Lcho_R0016 rRNA Lcho_R0016 NC_010524.1 1103250 1106133 D 23S ribosomal RNA 1103250..1106133 Leptothrix cholodnii SP-6 6160243 Lcho_R0017 rRNA Lcho_R0017 NC_010524.1 1106281 1106393 D 5S ribosomal RNA 1106281..1106393 Leptothrix cholodnii SP-6 6160696 Lcho_R0045 rRNA Lcho_R0045 NC_010524.1 2928806 2928984 D 6S ribosomal RNA 2928806..2928984 Leptothrix cholodnii SP-6 6161845