-- dump date 20140619_132018 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_469348.1 16799080 1128350 319..1674 1 NC_003212.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1674 dnaA 1128350 dnaA Listeria innocua Clip11262 chromosomal replication initiation protein NP_469348.1 319 D 272626 CDS NP_469349.1 16799081 1128351 1868..3013 1 NC_003212.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3013 dnaN 1128351 dnaN Listeria innocua Clip11262 DNA polymerase III subunit beta NP_469349.1 1868 D 272626 CDS NP_469350.1 16799082 1128352 3122..4465 1 NC_003212.1 hypothetical protein 4465 1128352 lin0003 Listeria innocua Clip11262 hypothetical protein NP_469350.1 3122 D 272626 CDS NP_469351.1 16799083 1128353 4645..4863 1 NC_003212.1 similar to Bacillus subtilis YaaA protein; hypothetical protein 4863 1128353 lin0004 Listeria innocua Clip11262 hypothetical protein NP_469351.1 4645 D 272626 CDS NP_469352.1 16799084 1128354 4870..5982 1 NC_003212.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 5982 recF 1128354 recF Listeria innocua Clip11262 recombination protein F NP_469352.1 4870 D 272626 CDS NP_469353.1 16799085 1128355 6031..7971 1 NC_003212.1 DNA gyrase subunit B 7971 gyrB 1128355 gyrB Listeria innocua Clip11262 DNA gyrase subunit B NP_469353.1 6031 D 272626 CDS NP_469354.1 16799086 1128356 8066..10594 1 NC_003212.1 DNA gyrase subunit A 10594 gyrA 1128356 gyrA Listeria innocua Clip11262 DNA gyrase subunit A NP_469354.1 8066 D 272626 CDS NP_469355.1 16799087 1128357 10729..12243 1 NC_003212.1 similar to cardiolipin synthase; hypothetical protein 12243 1128357 lin0008 Listeria innocua Clip11262 hypothetical protein NP_469355.1 10729 D 272626 CDS NP_469356.1 16799088 1128358 12259..12777 1 NC_003212.1 similar to spermidine N1-acetyltransferase; hypothetical protein 12777 1128358 lin0009 Listeria innocua Clip11262 hypothetical protein NP_469356.1 12259 D 272626 CDS NP_469357.1 16799089 1128359 12919..13887 1 NC_003212.1 similar to mevalonate kinase; hypothetical protein 13887 1128359 lin0010 Listeria innocua Clip11262 hypothetical protein NP_469357.1 12919 D 272626 CDS NP_469358.1 16799090 1128361 13796..14815 1 NC_003212.1 similar to mevalonate diphosphate decarboxylase; hypothetical protein 14815 1128361 lin0011 Listeria innocua Clip11262 hypothetical protein NP_469358.1 13796 D 272626 CDS NP_469359.1 16799091 1128363 14793..15875 1 NC_003212.1 similar to mevalonate kinases; hypothetical protein 15875 1128363 lin0012 Listeria innocua Clip11262 hypothetical protein NP_469359.1 14793 D 272626 CDS NP_469360.1 16799092 1128364 16219..17325 1 NC_003212.1 AA3-600 quinol oxidase subunit II 17325 qoxA 1128364 qoxA Listeria innocua Clip11262 AA3-600 quinol oxidase subunit II NP_469360.1 16219 D 272626 CDS NP_469361.1 16799093 1128365 17343..19322 1 NC_003212.1 AA3-600 quinol oxidase subunit I 19322 qoxB 1128365 qoxB Listeria innocua Clip11262 AA3-600 quinol oxidase subunit I NP_469361.1 17343 D 272626 CDS NP_469362.1 16799094 1128366 19310..19921 1 NC_003212.1 AA3-600 quinol oxidase subunit III 19921 qoxC 1128366 qoxC Listeria innocua Clip11262 AA3-600 quinol oxidase subunit III NP_469362.1 19310 D 272626 CDS NP_469363.1 16799095 1128368 19923..20255 1 NC_003212.1 highly similar to quinol oxidase aa3-600 chain IV; hypothetical protein 20255 1128368 lin0016 Listeria innocua Clip11262 hypothetical protein NP_469363.1 19923 D 272626 CDS NP_469364.1 16799096 1128369 20424..21857 1 NC_003212.1 beta-glucosidase 21857 1128369 lin0017 Listeria innocua Clip11262 beta-glucosidase NP_469364.1 20424 D 272626 CDS NP_469365.1 16799097 1128370 complement(21904..22725) 1 NC_003212.1 lin0018; hypothetical protein 22725 1128370 lin0018 Listeria innocua Clip11262 hypothetical protein NP_469365.1 21904 R 272626 CDS NP_469366.1 16799098 1128371 22966..23706 1 NC_003212.1 similar to transcriptional regulator (GntR family); hypothetical protein 23706 1128371 lin0019 Listeria innocua Clip11262 hypothetical protein NP_469366.1 22966 D 272626 CDS NP_469367.1 16799099 1128372 23722..24123 1 NC_003212.1 similar to PTS system, fructose-specific IIA component; hypothetical protein 24123 1128372 lin0020 Listeria innocua Clip11262 hypothetical protein NP_469367.1 23722 D 272626 CDS NP_469368.1 16799100 1128374 24123..24611 1 NC_003212.1 similar to PTS system, fructose-specific IIB component; hypothetical protein 24611 1128374 lin0021 Listeria innocua Clip11262 hypothetical protein NP_469368.1 24123 D 272626 CDS NP_469369.1 16799101 1128375 24634..25437 1 NC_003212.1 similar to PTS system, fructose-specific IIC component; hypothetical protein 25437 1128375 lin0022 Listeria innocua Clip11262 hypothetical protein NP_469369.1 24634 D 272626 CDS NP_469370.1 16799102 1128377 25412..26239 1 NC_003212.1 similar to PTS system, mannose-specific IID component; hypothetical protein 26239 1128377 lin0023 Listeria innocua Clip11262 hypothetical protein NP_469370.1 25412 D 272626 CDS NP_469371.1 16799103 1128378 26267..26971 1 NC_003212.1 similar to phosphoheptose isomerase; hypothetical protein 26971 1128378 lin0024 Listeria innocua Clip11262 hypothetical protein NP_469371.1 26267 D 272626 CDS NP_469372.1 16799104 1128379 27026..27667 1 NC_003212.1 similar to Escherichia coli copper homeostasis protein CutC; hypothetical protein 27667 1128379 lin0025 Listeria innocua Clip11262 hypothetical protein NP_469372.1 27026 D 272626 CDS NP_469373.1 16799105 1128380 27872..29773 1 NC_003212.1 similar to PTS system, beta-glucosides specific enzyme IIABC; hypothetical protein 29773 1128380 lin0026 Listeria innocua Clip11262 hypothetical protein NP_469373.1 27872 D 272626 CDS NP_469374.1 16799106 1128381 29855..30730 1 NC_003212.1 similar to Escherichia coli microcin C7 self-immunity protein (MccF); hypothetical protein 30730 1128381 lin0027 Listeria innocua Clip11262 hypothetical protein NP_469374.1 29855 D 272626 CDS NP_469375.1 16799107 1128382 30963..31301 1 NC_003212.1 lin0028; hypothetical protein 31301 1128382 lin0028 Listeria innocua Clip11262 hypothetical protein NP_469375.1 30963 D 272626 CDS NP_469376.1 16799108 1128383 complement(31338..32147) 1 NC_003212.1 hypothetical protein 32147 1128383 lin0029 Listeria innocua Clip11262 hypothetical protein NP_469376.1 31338 R 272626 CDS NP_469377.1 16799109 1128384 complement(32164..33219) 1 NC_003212.1 LacI family transcription regulator 33219 1128384 lin0030 Listeria innocua Clip11262 LacI family transcription regulator NP_469377.1 32164 R 272626 CDS NP_469378.1 16799110 1128385 33421..34386 1 NC_003212.1 similar to xylose repressor; hypothetical protein 34386 1128385 lin0031 Listeria innocua Clip11262 hypothetical protein NP_469378.1 33421 D 272626 CDS NP_469379.1 16799111 1128387 34383..36785 1 NC_003212.1 similar to endoglucanase; hypothetical protein 36785 1128387 lin0032 Listeria innocua Clip11262 hypothetical protein NP_469379.1 34383 D 272626 CDS NP_469380.1 16799112 1128388 36798..38156 1 NC_003212.1 similar to PTS system, cellobiose-specific IIC component; hypothetical protein 38156 1128388 lin0033 Listeria innocua Clip11262 hypothetical protein NP_469380.1 36798 D 272626 CDS NP_469381.1 16799113 1128390 38157..39242 1 NC_003212.1 similar to Glucosamine--fructose-6-phosphate aminotransferase (C-terminal domain); hypothetical protein 39242 1128390 lin0034 Listeria innocua Clip11262 hypothetical protein NP_469381.1 38157 D 272626 CDS NP_469382.1 16799114 1128391 39445..40104 1 NC_003212.1 similar to Escherichia coli DedA protein; hypothetical protein 40104 1128391 lin0035 Listeria innocua Clip11262 hypothetical protein NP_469382.1 39445 D 272626 CDS NP_469383.1 16799115 1128392 40183..41409 1 NC_003212.1 similar to arginine deiminase; catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 41409 1128392 lin0036 Listeria innocua Clip11262 arginine deiminase NP_469383.1 40183 D 272626 CDS NP_469384.1 16799116 1128393 41689..41982 1 NC_003212.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 41982 rpsF 1128393 rpsF Listeria innocua Clip11262 30S ribosomal protein S6 NP_469384.1 41689 D 272626 CDS NP_469385.1 16799117 1128394 42038..42577 1 NC_003212.1 highly similar to single-strand binding protein (SSB); hypothetical protein 42577 1128394 lin0038 Listeria innocua Clip11262 hypothetical protein NP_469385.1 42038 D 272626 CDS NP_469386.1 16799118 1128395 42621..42860 1 NC_003212.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 42860 rpsR 1128395 rpsR Listeria innocua Clip11262 30S ribosomal protein S18 NP_469386.1 42621 D 272626 CDS NP_469387.1 16799119 1128396 43016..43627 1 NC_003212.1 lin0040; hypothetical protein 43627 1128396 lin0040 Listeria innocua Clip11262 hypothetical protein NP_469387.1 43016 D 272626 CDS NP_469388.1 16799120 1128397 43883..44497 1 NC_003212.1 similar to Staphylococcus two-component sensor histidine kinase AgrB; essential for production of a quorum sensing autoinducing peptide; putative accessory gene regulator protein 44497 1128397 lin0041 Listeria innocua Clip11262 putative accessory gene regulator protein NP_469388.1 43883 D 272626 CDS NP_469389.1 16799121 1128399 44481..44642 1 NC_003212.1 lin0042; hypothetical protein 44642 1128399 lin0042 Listeria innocua Clip11262 hypothetical protein NP_469389.1 44481 D 272626 CDS NP_469390.1 16799122 1128400 44738..46033 1 NC_003212.1 similar to sensor histidine kinase (AgrC from Staphylococcus); hypothetical protein 46033 1128400 lin0043 Listeria innocua Clip11262 hypothetical protein NP_469390.1 44738 D 272626 CDS NP_469391.1 16799123 1128401 46052..46780 1 NC_003212.1 similar to 2-components response regulator protein (AgrA from Staphylococcus); hypothetical protein 46780 1128401 lin0044 Listeria innocua Clip11262 hypothetical protein NP_469391.1 46052 D 272626 CDS NP_469392.1 16799124 1128402 46947..48920 1 NC_003212.1 highly similar to Bacillus subtilis YybT protein; hypothetical protein 48920 1128402 lin0045 Listeria innocua Clip11262 hypothetical protein NP_469392.1 46947 D 272626 CDS NP_469393.1 16799125 1128404 48923..49369 1 NC_003212.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 49369 rplI 1128404 rplI Listeria innocua Clip11262 50S ribosomal protein L9 NP_469393.1 48923 D 272626 CDS NP_469394.1 16799126 1128405 49394..50746 1 NC_003212.1 highly similar to replicative DNA helicases; unwinds double stranded DNA; replicative DNA helicase 50746 1128405 lin0047 Listeria innocua Clip11262 replicative DNA helicase NP_469394.1 49394 D 272626 CDS NP_469395.1 16799127 1128406 51005..52297 1 NC_003212.1 highly similar to adenylosuccinate synthetase; catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 52297 1128406 lin0048 Listeria innocua Clip11262 adenylosuccinate synthetase NP_469395.1 51005 D 272626 CDS NP_469396.1 16799128 1128407 52623..52916 1 NC_003212.1 similar to a small heat shock protein of Clostridium acetobutylicum; hypothetical protein 52916 1128407 lin0049 Listeria innocua Clip11262 hypothetical protein NP_469396.1 52623 D 272626 CDS NP_469397.1 16799129 1128408 53065..56268 1 NC_003212.1 similar to Bacillus subtilis YueB protein; hypothetical protein 56268 1128408 lin0050 Listeria innocua Clip11262 hypothetical protein NP_469397.1 53065 D 272626 CDS NP_469398.1 16799130 1128410 56258..56770 1 NC_003212.1 lin0051; hypothetical protein 56770 1128410 lin0051 Listeria innocua Clip11262 hypothetical protein NP_469398.1 56258 D 272626 CDS NP_469399.1 16799131 1128411 56788..57039 1 NC_003212.1 similar to Bacillus subtilis YukD protein; hypothetical protein 57039 1128411 lin0052 Listeria innocua Clip11262 hypothetical protein NP_469399.1 56788 D 272626 CDS NP_469400.1 16799132 1128412 57061..58257 1 NC_003212.1 similar to Bacillus subtilis YukC protein; hypothetical protein 58257 1128412 lin0053 Listeria innocua Clip11262 hypothetical protein NP_469400.1 57061 D 272626 CDS NP_469401.1 16799133 1128413 58271..62767 1 NC_003212.1 highly similar to Bacillus subtilis YukA protein; hypothetical protein 62767 1128413 lin0054 Listeria innocua Clip11262 hypothetical protein NP_469401.1 58271 D 272626 CDS NP_469402.1 16799134 1128414 62787..63182 1 NC_003212.1 lin0055; hypothetical protein 63182 1128414 lin0055 Listeria innocua Clip11262 hypothetical protein NP_469402.1 62787 D 272626 CDS NP_469403.1 16799135 1128416 63175..63474 1 NC_003212.1 lin0056; hypothetical protein 63474 1128416 lin0056 Listeria innocua Clip11262 hypothetical protein NP_469403.1 63175 D 272626 CDS NP_469404.1 16799136 1128418 63471..64172 1 NC_003212.1 lin0057; hypothetical protein 64172 1128418 lin0057 Listeria innocua Clip11262 hypothetical protein NP_469404.1 63471 D 272626 CDS NP_469405.1 16799137 1128420 64173..64505 1 NC_003212.1 lin0058; hypothetical protein 64505 1128420 lin0058 Listeria innocua Clip11262 hypothetical protein NP_469405.1 64173 D 272626 CDS NP_469406.1 16799138 1128421 64519..66252 1 NC_003212.1 lin0059; hypothetical protein 66252 1128421 lin0059 Listeria innocua Clip11262 hypothetical protein NP_469406.1 64519 D 272626 CDS NP_469407.1 16799139 1128422 66267..66881 1 NC_003212.1 lin0060; hypothetical protein 66881 1128422 lin0060 Listeria innocua Clip11262 hypothetical protein NP_469407.1 66267 D 272626 CDS NP_469408.1 16799140 1128423 67522..67845 1 NC_003212.1 hypothetical protein 67845 1128423 lin0061 Listeria innocua Clip11262 hypothetical protein NP_469408.1 67522 D 272626 CDS NP_469409.1 16799141 1128424 68014..68646 1 NC_003212.1 hypothetical protein 68646 1128424 lin0062 Listeria innocua Clip11262 hypothetical protein NP_469409.1 68014 D 272626 CDS NP_469410.1 16799142 1128426 70428..70817 1 NC_003212.1 lin0064; hypothetical protein 70817 1128426 lin0064 Listeria innocua Clip11262 hypothetical protein NP_469410.1 70428 D 272626 CDS NP_469411.1 16799143 1128427 70955..71365 1 NC_003212.1 lin0065; hypothetical protein 71365 1128427 lin0065 Listeria innocua Clip11262 hypothetical protein NP_469411.1 70955 D 272626 CDS NP_469412.1 16799144 1128428 71623..71946 1 NC_003212.1 lin0066; hypothetical protein 71946 1128428 lin0066 Listeria innocua Clip11262 hypothetical protein NP_469412.1 71623 D 272626 CDS NP_469413.1 16799145 1128429 72374..73147 1 NC_003212.1 similar to carboxyphosphonoenolpyruvate phosphonomutase; hypothetical protein 73147 1128429 lin0067 Listeria innocua Clip11262 hypothetical protein NP_469413.1 72374 D 272626 CDS NP_469414.1 16799146 1128431 73144..74196 1 NC_003212.1 similar to Escherichia coli Ada protein (O6-methylguanine-DNA methyltransferase); hypothetical protein 74196 1128431 lin0068 Listeria innocua Clip11262 hypothetical protein NP_469414.1 73144 D 272626 CDS NP_469415.1 16799147 1128432 complement(74218..74856) 1 NC_003212.1 hypothetical protein 74856 1128432 lin0069 Listeria innocua Clip11262 hypothetical protein NP_469415.1 74218 R 272626 CDS NP_469416.1 16799148 1128433 74988..75944 1 NC_003212.1 similar to phosphoglycerate dehydrogenase; hypothetical protein 75944 1128433 lin0070 Listeria innocua Clip11262 hypothetical protein NP_469416.1 74988 D 272626 CDS NP_469417.1 16799149 1128434 complement(76209..77411) 1 NC_003212.1 similar to integrase; hypothetical protein 77411 1128434 lin0071 Listeria innocua Clip11262 hypothetical protein NP_469417.1 76209 R 272626 CDS NP_469418.1 16799150 1128435 complement(77476..78126) 1 NC_003212.1 lin0072; hypothetical protein 78126 1128435 lin0072 Listeria innocua Clip11262 hypothetical protein NP_469418.1 77476 R 272626 CDS NP_469419.1 16799151 1128436 complement(78505..78981) 1 NC_003212.1 similar to a putative repressor protein [Bacteriophage A118]; hypothetical protein 78981 1128436 lin0073 Listeria innocua Clip11262 hypothetical protein NP_469419.1 78505 R 272626 CDS NP_469420.1 16799152 1128437 79378..79644 1 NC_003212.1 highly similar to gp37 [Bacteriophage A118]; hypothetical protein 79644 1128437 lin0074 Listeria innocua Clip11262 hypothetical protein NP_469420.1 79378 D 272626 CDS NP_469421.1 16799153 1128438 complement(79573..79803) 1 NC_003212.1 highly similar to gp37-1 [Bacteriophage A118]; hypothetical protein 79803 1128438 lin0075 Listeria innocua Clip11262 hypothetical protein NP_469421.1 79573 R 272626 CDS NP_469422.1 16799154 1128439 79869..80063 1 NC_003212.1 lin0076; hypothetical protein 80063 1128439 lin0076 Listeria innocua Clip11262 hypothetical protein NP_469422.1 79869 D 272626 CDS NP_469423.1 16799155 1128440 80075..80311 1 NC_003212.1 identical to gp40 [Bacteriophage A118]; identical to gp40 80311 1128440 lin0077 Listeria innocua Clip11262 identical to gp40 NP_469423.1 80075 D 272626 CDS NP_469424.1 16799156 1128441 80308..80589 1 NC_003212.1 similar to protein gp41 [Bacteriophage A118]; hypothetical protein 80589 1128441 lin0078 Listeria innocua Clip11262 hypothetical protein NP_469424.1 80308 D 272626 CDS NP_469425.1 16799157 1128442 complement(80775..81017) 1 NC_003212.1 lin0079; hypothetical protein 81017 1128442 lin0079 Listeria innocua Clip11262 hypothetical protein NP_469425.1 80775 R 272626 CDS NP_469426.1 16799158 1128443 81081..81854 1 NC_003212.1 similar to similar to anti-repressor [Bacteriophage A118]; hypothetical protein 81854 1128443 lin0080 Listeria innocua Clip11262 hypothetical protein NP_469426.1 81081 D 272626 CDS NP_469427.1 16799159 1128444 81973..82497 1 NC_003212.1 highly similar to gp43 [Bacteriophage A118]; hypothetical protein 82497 1128444 lin0081 Listeria innocua Clip11262 hypothetical protein NP_469427.1 81973 D 272626 CDS NP_469428.1 16799160 1128446 82504..82689 1 NC_003212.1 lin0082; hypothetical protein 82689 1128446 lin0082 Listeria innocua Clip11262 hypothetical protein NP_469428.1 82504 D 272626 CDS NP_469429.1 16799161 1128447 82705..82893 1 NC_003212.1 highly similar to gp45 [Bacteriophage A118]; hypothetical protein 82893 1128447 lin0083 Listeria innocua Clip11262 hypothetical protein NP_469429.1 82705 D 272626 CDS NP_469430.1 16799162 1128448 83126..84085 1 NC_003212.1 highly similar to gp47 [Bacteriophage A118]; hypothetical protein 84085 1128448 lin0084 Listeria innocua Clip11262 hypothetical protein NP_469430.1 83126 D 272626 CDS NP_469431.1 16799163 1128450 84085..84900 1 NC_003212.1 putative recombinase [Bacteriophage A118]; putative recombinase 84900 1128450 lin0085 Listeria innocua Clip11262 putative recombinase NP_469431.1 84085 D 272626 CDS NP_469432.1 16799164 1128451 84921..85832 1 NC_003212.1 similar to protein gp49; hypothetical protein 85832 1128451 lin0086 Listeria innocua Clip11262 hypothetical protein NP_469432.1 84921 D 272626 CDS NP_469433.1 16799165 1128453 85829..85996 1 NC_003212.1 similar to phage protein; hypothetical protein 85996 1128453 lin0087 Listeria innocua Clip11262 hypothetical protein NP_469433.1 85829 D 272626 CDS NP_469434.1 16799166 1128454 86290..87102 1 NC_003212.1 similar to site-specific DNA-methyltransferase; hypothetical protein 87102 1128454 lin0088 Listeria innocua Clip11262 hypothetical protein NP_469434.1 86290 D 272626 CDS NP_469435.1 16799167 1128456 87099..87728 1 NC_003212.1 similar to gp51 [Bacteriophage A118]; hypothetical protein 87728 1128456 lin0089 Listeria innocua Clip11262 hypothetical protein NP_469435.1 87099 D 272626 CDS NP_469436.1 16799168 1128458 87725..88246 1 NC_003212.1 lin0090; hypothetical protein 88246 1128458 lin0090 Listeria innocua Clip11262 hypothetical protein NP_469436.1 87725 D 272626 CDS NP_469437.1 16799169 1128459 88373..88765 1 NC_003212.1 similar to phage proteins; hypothetical protein 88765 1128459 lin0091 Listeria innocua Clip11262 hypothetical protein NP_469437.1 88373 D 272626 CDS NP_469438.1 16799170 1128461 88762..88947 1 NC_003212.1 lin0092; hypothetical protein 88947 1128461 lin0092 Listeria innocua Clip11262 hypothetical protein NP_469438.1 88762 D 272626 CDS NP_469439.1 16799171 1128463 88944..89234 1 NC_003212.1 lin0093; hypothetical protein 89234 1128463 lin0093 Listeria innocua Clip11262 hypothetical protein NP_469439.1 88944 D 272626 CDS NP_469440.1 16799172 1128465 89231..89437 1 NC_003212.1 highly similar to gp55 [Bacteriophage A118]; hypothetical protein 89437 1128465 lin0094 Listeria innocua Clip11262 hypothetical protein NP_469440.1 89231 D 272626 CDS NP_469441.1 16799173 1128467 89438..89839 1 NC_003212.1 highly similar to gp59 [Bacteriophage A118]; hypothetical protein 89839 1128467 lin0095 Listeria innocua Clip11262 hypothetical protein NP_469441.1 89438 D 272626 CDS NP_469442.1 16799174 1128469 89836..90336 1 NC_003212.1 lin0096; hypothetical protein 90336 1128469 lin0096 Listeria innocua Clip11262 hypothetical protein NP_469442.1 89836 D 272626 CDS NP_469443.1 16799175 1128470 90333..90812 1 NC_003212.1 similar to single-stranded DNA-binding protein; hypothetical protein 90812 1128470 lin0097 Listeria innocua Clip11262 hypothetical protein NP_469443.1 90333 D 272626 CDS NP_469444.1 16799176 1128471 90831..91013 1 NC_003212.1 hypothetical protein 91013 1128471 lin0098 Listeria innocua Clip11262 hypothetical protein NP_469444.1 90831 D 272626 CDS NP_469445.1 16799177 1128473 90958..91362 1 NC_003212.1 similar to phage protein; hypothetical protein 91362 1128473 lin0099 Listeria innocua Clip11262 hypothetical protein NP_469445.1 90958 D 272626 CDS NP_469446.1 16799178 1128475 91366..91749 1 NC_003212.1 lin0100; hypothetical protein 91749 1128475 lin0100 Listeria innocua Clip11262 hypothetical protein NP_469446.1 91366 D 272626 CDS NP_469447.1 16799179 1128476 91890..92324 1 NC_003212.1 Protein gp66 [Bacteriophage A118]; protein gp66 92324 1128476 lin0101 Listeria innocua Clip11262 protein gp66 NP_469447.1 91890 D 272626 CDS NP_469448.1 16799180 1128477 92534..92710 1 NC_003212.1 lin0102; hypothetical protein 92710 1128477 lin0102 Listeria innocua Clip11262 hypothetical protein NP_469448.1 92534 D 272626 CDS NP_469449.1 16799181 1128478 92769..93032 1 NC_003212.1 lin0103; hypothetical protein 93032 1128478 lin0103 Listeria innocua Clip11262 hypothetical protein NP_469449.1 92769 D 272626 CDS NP_469450.1 16799182 1128479 93090..93632 1 NC_003212.1 highly similar to putative terminase small subunit [Bacteriophage A118]; hypothetical protein 93632 1128479 lin0104 Listeria innocua Clip11262 hypothetical protein NP_469450.1 93090 D 272626 CDS NP_469451.1 16799183 1128481 93601..94932 1 NC_003212.1 putative terminase large subunit from bacteriophage A118 94932 1128481 lin0105 Listeria innocua Clip11262 putative terminase large subunit from bacteriophage A118 NP_469451.1 93601 D 272626 CDS NP_469452.1 16799184 1128482 94945..96714 1 NC_003212.1 putative portal protein [Bacteriophage A118]; putative portal protein 96714 1128482 lin0106 Listeria innocua Clip11262 putative portal protein NP_469452.1 94945 D 272626 CDS NP_469453.1 16799185 1128484 96715..97854 1 NC_003212.1 Protein gp4 [Bacteriophage A118]; protein gp4 97854 1128484 lin0107 Listeria innocua Clip11262 protein gp4 NP_469453.1 96715 D 272626 CDS NP_469454.1 16799186 1128485 97933..98502 1 NC_003212.1 putative scaffolding protein [Bacteriophage A118]; putative scaffolding protein 98502 1128485 lin0108 Listeria innocua Clip11262 putative scaffolding protein NP_469454.1 97933 D 272626 CDS NP_469455.1 16799187 1128486 98526..99425 1 NC_003212.1 highly similar to major capsid protein [Bacteriophage A118]; hypothetical protein 99425 1128486 lin0109 Listeria innocua Clip11262 hypothetical protein NP_469455.1 98526 D 272626 CDS NP_469456.1 16799188 1128487 99425..99583 1 NC_003212.1 Protein gp7 [Bacteriophage A118]; protein gp7 99583 1128487 lin0110 Listeria innocua Clip11262 protein gp7 NP_469456.1 99425 D 272626 CDS NP_469457.1 16799189 1128488 99585..99980 1 NC_003212.1 Protein gp8 [Bacteriophage A118]; protein gp8 99980 1128488 lin0111 Listeria innocua Clip11262 protein gp8 NP_469457.1 99585 D 272626 CDS NP_469458.1 16799190 1128490 99980..100342 1 NC_003212.1 Protein gp9 [Bacteriophage A118]; protein gp9 100342 1128490 lin0112 Listeria innocua Clip11262 protein gp9 NP_469458.1 99980 D 272626 CDS NP_469459.1 16799191 1128491 100342..100680 1 NC_003212.1 Protein gp10 [Bacteriophage A118]; protein gp10 100680 1128491 lin0113 Listeria innocua Clip11262 protein gp10 NP_469459.1 100342 D 272626 CDS NP_469460.1 16799192 1128493 100680..101087 1 NC_003212.1 Portein gp11 [Bacteriophage A118]; protein gp11 101087 1128493 lin0114 Listeria innocua Clip11262 protein gp11 NP_469460.1 100680 D 272626 CDS NP_469461.1 16799193 1128496 101090..101527 1 NC_003212.1 major tail shaft protein [Bacteriophage A118]; major tail shaft protein 101527 1128496 lin0115 Listeria innocua Clip11262 major tail shaft protein NP_469461.1 101090 D 272626 CDS NP_469462.1 16799194 1128498 101842..102264 1 NC_003212.1 Protein gp14 [Bacteriophage A118]; protein gp14 102264 1128498 lin0117 Listeria innocua Clip11262 protein gp14 NP_469462.1 101842 D 272626 CDS NP_469463.1 16799195 1128500 102270..102872 1 NC_003212.1 Protein gp15 [Bacteriophage A118]; protein gp15 102872 1128500 lin0118 Listeria innocua Clip11262 protein gp15 NP_469463.1 102270 D 272626 CDS NP_469464.1 16799196 1128501 102883..108249 1 NC_003212.1 putative tape-measure [Bacteriophage A118]; putative tape-measure 108249 1128501 lin0119 Listeria innocua Clip11262 putative tape-measure NP_469464.1 102883 D 272626 CDS NP_469465.1 16799197 1128503 108246..109073 1 NC_003212.1 highly similar to gp17 [Bacteriophage A118]; hypothetical protein 109073 1128503 lin0120 Listeria innocua Clip11262 hypothetical protein NP_469465.1 108246 D 272626 CDS NP_469466.1 16799198 1128504 109073..110110 1 NC_003212.1 highly similar to gp18 [Bacteriophage A118]; hypothetical protein 110110 1128504 lin0121 Listeria innocua Clip11262 hypothetical protein NP_469466.1 109073 D 272626 CDS NP_469467.1 16799199 1128506 110111..111136 1 NC_003212.1 highly similar to gp19 [Bacteriophage A118]; hypothetical protein 111136 1128506 lin0122 Listeria innocua Clip11262 hypothetical protein NP_469467.1 110111 D 272626 CDS NP_469468.1 16799200 1128508 111133..112200 1 NC_003212.1 similar to gp20 [Bacteriophage A118]; hypothetical protein 112200 1128508 lin0123 Listeria innocua Clip11262 hypothetical protein NP_469468.1 111133 D 272626 CDS NP_469469.1 16799201 1128510 112197..112538 1 NC_003212.1 lin0124; hypothetical protein 112538 1128510 lin0124 Listeria innocua Clip11262 hypothetical protein NP_469469.1 112197 D 272626 CDS NP_469470.1 16799202 1128512 112539..112685 1 NC_003212.1 lin0125; hypothetical protein 112685 1128512 lin0125 Listeria innocua Clip11262 hypothetical protein NP_469470.1 112539 D 272626 CDS NP_469471.1 16799203 1128514 112722..113087 1 NC_003212.1 protein gp23 [Bacteriophage A118]; protein gp23 113087 1128514 lin0126 Listeria innocua Clip11262 protein gp23 NP_469471.1 112722 D 272626 CDS NP_469472.1 16799204 1128515 113100..113381 1 NC_003212.1 holin [Bacteriophage A118]; holin 113381 1128515 lin0127 Listeria innocua Clip11262 holin NP_469472.1 113100 D 272626 CDS NP_469473.1 16799205 1128517 113381..114250 1 NC_003212.1 Bacteriophage A500 from Listeria; L-alanoyl-D-glutamate peptidase 114250 1128517 lin0128 Listeria innocua Clip11262 L-alanoyl-D-glutamate peptidase NP_469473.1 113381 D 272626 CDS NP_469474.1 16799206 1128518 114275..114691 1 NC_003212.1 lin0129; hypothetical protein 114691 1128518 lin0129 Listeria innocua Clip11262 hypothetical protein NP_469474.1 114275 D 272626 CDS NP_469475.1 16799207 1128519 115716..116072 1 NC_003212.1 lin0130; hypothetical protein 116072 1128519 lin0130 Listeria innocua Clip11262 hypothetical protein NP_469475.1 115716 D 272626 CDS NP_469476.1 16799208 1128520 116483..117142 1 NC_003212.1 lin0131; hypothetical protein 117142 1128520 lin0131 Listeria innocua Clip11262 hypothetical protein NP_469476.1 116483 D 272626 CDS NP_469477.1 16799209 1128521 117256..123096 1 NC_003212.1 lin0132; hypothetical protein 123096 1128521 lin0132 Listeria innocua Clip11262 hypothetical protein NP_469477.1 117256 D 272626 CDS NP_469478.1 16799210 1128523 123093..125372 1 NC_003212.1 lin0133; hypothetical protein 125372 1128523 lin0133 Listeria innocua Clip11262 hypothetical protein NP_469478.1 123093 D 272626 CDS NP_469479.1 16799211 1128524 125429..125671 1 NC_003212.1 similar to ATP synthase C chain; hypothetical protein 125671 1128524 lin0134 Listeria innocua Clip11262 hypothetical protein NP_469479.1 125429 D 272626 CDS NP_469480.1 16799212 1128525 125683..126714 1 NC_003212.1 weakly similar to ATP synthase delta chain; hypothetical protein 126714 1128525 lin0135 Listeria innocua Clip11262 hypothetical protein NP_469480.1 125683 D 272626 CDS NP_469481.1 16799213 1128527 126711..128207 1 NC_003212.1 similar to ATP synthase alpha chain; produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 128207 1128527 lin0136 Listeria innocua Clip11262 F0F1 ATP synthase subunit alpha NP_469481.1 126711 D 272626 CDS NP_469482.1 16799214 1128528 128204..129076 1 NC_003212.1 similar to ATP synthase gamma chain; hypothetical protein 129076 1128528 lin0137 Listeria innocua Clip11262 hypothetical protein NP_469482.1 128204 D 272626 CDS NP_469483.1 16799215 1128530 129077..130447 1 NC_003212.1 similar to ATP synthase beta chain; produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 130447 1128530 lin0138 Listeria innocua Clip11262 F0F1 ATP synthase subunit beta NP_469483.1 129077 D 272626 CDS NP_469484.1 16799216 1128531 130460..130777 1 NC_003212.1 similar to ATP synthase epsilon chain; hypothetical protein 130777 1128531 lin0139 Listeria innocua Clip11262 hypothetical protein NP_469484.1 130460 D 272626 CDS NP_469485.1 16799217 1128533 130774..131334 1 NC_003212.1 lin0140; hypothetical protein 131334 1128533 lin0140 Listeria innocua Clip11262 hypothetical protein NP_469485.1 130774 D 272626 CDS NP_469486.1 16799218 1128534 131478..137459 1 NC_003212.1 peptidoglycan binding protein 137459 1128534 lin0141 Listeria innocua Clip11262 peptidoglycan binding protein NP_469486.1 131478 D 272626 CDS NP_469487.1 16799219 1128535 137621..138259 1 NC_003212.1 lin0142; hypothetical protein 138259 1128535 lin0142 Listeria innocua Clip11262 hypothetical protein NP_469487.1 137621 D 272626 CDS NP_469488.1 16799220 1128536 138556..139521 1 NC_003212.1 similar to PTS system mannose-specific, factor IIAB; hypothetical protein 139521 1128536 lin0143 Listeria innocua Clip11262 hypothetical protein NP_469488.1 138556 D 272626 CDS NP_469489.1 16799221 1128537 139545..140351 1 NC_003212.1 similar to PTS system mannose-specific, factor IIC; hypothetical protein 140351 1128537 lin0144 Listeria innocua Clip11262 hypothetical protein NP_469489.1 139545 D 272626 CDS NP_469490.1 16799222 1128538 140373..141284 1 NC_003212.1 similar to PTS system mannose-specific, factor IID; hypothetical protein 141284 1128538 lin0145 Listeria innocua Clip11262 hypothetical protein NP_469490.1 140373 D 272626 CDS NP_469491.1 16799223 1128539 141411..141800 1 NC_003212.1 lin0146; hypothetical protein 141800 1128539 lin0146 Listeria innocua Clip11262 hypothetical protein NP_469491.1 141411 D 272626 CDS NP_469492.1 16799224 1128540 141935..142285 1 NC_003212.1 lin0147; hypothetical protein 142285 1128540 lin0147 Listeria innocua Clip11262 hypothetical protein NP_469492.1 141935 D 272626 CDS NP_469493.1 16799225 1128541 complement(142325..143842) 1 NC_003212.1 hypothetical protein 143842 1128541 lin0148 Listeria innocua Clip11262 hypothetical protein NP_469493.1 142325 R 272626 CDS NP_469494.1 16799226 1128542 complement(143949..144242) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 144242 1128542 lin0149 Listeria innocua Clip11262 hypothetical protein NP_469494.1 143949 R 272626 CDS NP_469495.1 16799227 1128543 144354..144644 1 NC_003212.1 lin0150; hypothetical protein 144644 1128543 lin0150 Listeria innocua Clip11262 hypothetical protein NP_469495.1 144354 D 272626 CDS NP_469496.1 16799228 1128544 144658..145290 1 NC_003212.1 similar to NADH oxidase; hypothetical protein 145290 1128544 lin0151 Listeria innocua Clip11262 hypothetical protein NP_469496.1 144658 D 272626 CDS NP_469497.1 16799229 1128545 145385..145756 1 NC_003212.1 lin0152; hypothetical protein 145756 1128545 lin0152 Listeria innocua Clip11262 hypothetical protein NP_469497.1 145385 D 272626 CDS NP_469498.1 16799230 1128546 146050..148320 1 NC_003212.1 highly similar to chitinase B; hypothetical protein 148320 1128546 lin0153 Listeria innocua Clip11262 hypothetical protein NP_469498.1 146050 D 272626 CDS NP_469499.1 16799231 1128547 complement(148360..149562) 1 NC_003212.1 hypothetical protein 149562 1128547 lin0154 Listeria innocua Clip11262 hypothetical protein NP_469499.1 148360 R 272626 CDS NP_469500.1 16799232 1128548 complement(149752..151533) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 151533 1128548 lin0155 Listeria innocua Clip11262 hypothetical protein NP_469500.1 149752 R 272626 CDS NP_469501.1 16799233 1128549 complement(151526..153268) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 153268 1128549 lin0156 Listeria innocua Clip11262 hypothetical protein NP_469501.1 151526 R 272626 CDS NP_469502.1 16799234 1128551 153411..154244 1 NC_003212.1 similar to transcriptional regulatory proteins, AraC family; hypothetical protein 154244 1128551 lin0157 Listeria innocua Clip11262 hypothetical protein NP_469502.1 153411 D 272626 CDS NP_469503.1 16799235 1128552 154394..155092 1 NC_003212.1 lin0158; hypothetical protein 155092 1128552 lin0158 Listeria innocua Clip11262 hypothetical protein NP_469503.1 154394 D 272626 CDS NP_469504.1 16799236 1128553 complement(155062..155757) 1 NC_003212.1 weakly similar to transcription regulators, Fnr/Crp family; hypothetical protein 155757 1128553 lin0159 Listeria innocua Clip11262 hypothetical protein NP_469504.1 155062 R 272626 CDS NP_469505.1 16799237 1128554 complement(155931..156383) 1 NC_003212.1 similar to protein gp35 from Bacteriophage A118; hypothetical protein 156383 1128554 lin0160 Listeria innocua Clip11262 hypothetical protein NP_469505.1 155931 R 272626 CDS NP_469506.1 16799238 1128555 complement(156389..156742) 1 NC_003212.1 similar to putative repressor C1 from lactococcal bacteriophage Tuc2009; hypothetical protein 156742 1128555 lin0161 Listeria innocua Clip11262 hypothetical protein NP_469506.1 156389 R 272626 CDS NP_469507.1 16799239 1128557 156943..157371 1 NC_003212.1 similar to Antigen D; hypothetical protein 157371 1128557 lin0162 Listeria innocua Clip11262 hypothetical protein NP_469507.1 156943 D 272626 CDS NP_469508.1 16799240 1128558 157383..157799 1 NC_003212.1 similar to Antigen C; hypothetical protein 157799 1128558 lin0163 Listeria innocua Clip11262 hypothetical protein NP_469508.1 157383 D 272626 CDS NP_469509.1 16799241 1128559 158079..158468 1 NC_003212.1 antigen B 158468 lmaB 1128559 lmaB Listeria innocua Clip11262 antigen B NP_469509.1 158079 D 272626 CDS NP_469510.1 16799242 1128560 158481..158993 1 NC_003212.1 antigen A 158993 lmaA 1128560 lmaA Listeria innocua Clip11262 antigen A NP_469510.1 158481 D 272626 CDS NP_469511.1 16799243 1128561 159041..159343 1 NC_003212.1 lin0166; hypothetical protein 159343 1128561 lin0166 Listeria innocua Clip11262 hypothetical protein NP_469511.1 159041 D 272626 CDS NP_469512.1 16799244 1128562 159454..159789 1 NC_003212.1 lin0167; hypothetical protein 159789 1128562 lin0167 Listeria innocua Clip11262 hypothetical protein NP_469512.1 159454 D 272626 CDS NP_469513.1 16799245 1128564 159776..161644 1 NC_003212.1 similar to bacteriophage minor tail proteins; hypothetical protein 161644 1128564 lin0168 Listeria innocua Clip11262 hypothetical protein NP_469513.1 159776 D 272626 CDS NP_469514.1 16799246 1128566 161641..162459 1 NC_003212.1 similar to phage proteins; hypothetical protein 162459 1128566 lin0169 Listeria innocua Clip11262 hypothetical protein NP_469514.1 161641 D 272626 CDS NP_469515.1 16799247 1128567 162469..163605 1 NC_003212.1 similar to protein gp18 from Bacteriophage A118; hypothetical protein 163605 1128567 lin0170 Listeria innocua Clip11262 hypothetical protein NP_469515.1 162469 D 272626 CDS NP_469516.1 16799248 1128569 163595..163894 1 NC_003212.1 lin0171; hypothetical protein 163894 1128569 lin0171 Listeria innocua Clip11262 hypothetical protein NP_469516.1 163595 D 272626 CDS NP_469517.1 16799249 1128570 163909..164484 1 NC_003212.1 lin0172; hypothetical protein 164484 1128570 lin0172 Listeria innocua Clip11262 hypothetical protein NP_469517.1 163909 D 272626 CDS NP_469518.1 16799250 1128571 164499..164978 1 NC_003212.1 lin0173; hypothetical protein 164978 1128571 lin0173 Listeria innocua Clip11262 hypothetical protein NP_469518.1 164499 D 272626 CDS NP_469519.1 16799251 1128573 164975..165511 1 NC_003212.1 weakly similar to protein gp20 from Bacteriophage A118; hypothetical protein 165511 1128573 lin0174 Listeria innocua Clip11262 hypothetical protein NP_469519.1 164975 D 272626 CDS NP_469520.1 16799252 1128574 165530..165952 1 NC_003212.1 similar to a protein from Bacteriophage phi-105 (ORF 45); hypothetical protein 165952 1128574 lin0175 Listeria innocua Clip11262 hypothetical protein NP_469520.1 165530 D 272626 CDS NP_469521.1 16799253 1128575 165933..166661 1 NC_003212.1 similar to autolysin: N-acetylmuramoyl-L-alanine amidase; hypothetical protein 166661 1128575 lin0176 Listeria innocua Clip11262 hypothetical protein NP_469521.1 165933 D 272626 CDS NP_469522.1 16799254 1128576 complement(166696..169053) 1 NC_003212.1 similar to 5'-nucleotidase, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 169053 1128576 lin0177 Listeria innocua Clip11262 hypothetical protein NP_469522.1 166696 R 272626 CDS NP_469523.1 16799255 1128577 169241..169990 1 NC_003212.1 hypothetical protein 169990 1128577 lin0178 Listeria innocua Clip11262 hypothetical protein NP_469523.1 169241 D 272626 CDS NP_469524.1 16799256 1128578 complement(170062..171570) 1 NC_003212.1 similar to inosine monophosphate dehydrogenase; catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 171570 1128578 lin0179 Listeria innocua Clip11262 inosine 5-monophosphate dehydrogenase NP_469524.1 170062 R 272626 CDS NP_469525.1 16799257 1128579 171737..171970 1 NC_003212.1 similar to Escherichia coli YjdI protein; hypothetical protein 171970 1128579 lin0180 Listeria innocua Clip11262 hypothetical protein NP_469525.1 171737 D 272626 CDS NP_469526.1 16799258 1128580 171982..172260 1 NC_003212.1 similar to Escherichia coli YjdJ protein; hypothetical protein 172260 1128580 lin0181 Listeria innocua Clip11262 hypothetical protein NP_469526.1 171982 D 272626 CDS NP_469527.1 16799259 1128581 172586..174160 1 NC_003212.1 similar to oligopeptide ABC transport system substrate-binding proteins; hypothetical protein 174160 1128581 lin0182 Listeria innocua Clip11262 hypothetical protein NP_469527.1 172586 D 272626 CDS NP_469528.1 16799260 1128582 174262..175212 1 NC_003212.1 similar to oligopeptide ABC transporter, permease protein; hypothetical protein 175212 1128582 lin0183 Listeria innocua Clip11262 hypothetical protein NP_469528.1 174262 D 272626 CDS NP_469529.1 16799261 1128583 175223..176116 1 NC_003212.1 similar to oligopeptide ABC transporter, permease protein; hypothetical protein 176116 1128583 lin0184 Listeria innocua Clip11262 hypothetical protein NP_469529.1 175223 D 272626 CDS NP_469530.1 16799262 1128584 176318..176602 1 NC_003212.1 lin0185; hypothetical protein 176602 1128584 lin0185 Listeria innocua Clip11262 hypothetical protein NP_469530.1 176318 D 272626 CDS NP_469531.1 16799263 1128586 176603..176971 1 NC_003212.1 lin0186; hypothetical protein 176971 1128586 lin0186 Listeria innocua Clip11262 hypothetical protein NP_469531.1 176603 D 272626 CDS NP_469532.1 16799264 1128588 176968..178398 1 NC_003212.1 lin0187; hypothetical protein 178398 1128588 lin0187 Listeria innocua Clip11262 hypothetical protein NP_469532.1 176968 D 272626 CDS NP_469533.1 16799265 1128589 178422..178841 1 NC_003212.1 lin0188; hypothetical protein 178841 1128589 lin0188 Listeria innocua Clip11262 hypothetical protein NP_469533.1 178422 D 272626 CDS NP_469534.1 16799266 1128590 178862..179017 1 NC_003212.1 lin0189; hypothetical protein 179017 1128590 lin0189 Listeria innocua Clip11262 hypothetical protein NP_469534.1 178862 D 272626 CDS NP_469535.1 16799267 1128591 complement(179138..180793) 1 NC_003212.1 similar to oligopeptide ABC transporter-binding protein; hypothetical protein 180793 1128591 lin0190 Listeria innocua Clip11262 hypothetical protein NP_469535.1 179138 R 272626 CDS NP_469536.1 16799268 1128592 181016..181954 1 NC_003212.1 similar to a probable high-affinity zinc ABC transporter (Zn(II)-binding lipoprotein); hypothetical protein 181954 1128592 lin0191 Listeria innocua Clip11262 hypothetical protein NP_469536.1 181016 D 272626 CDS NP_469537.1 16799269 1128593 181968..182672 1 NC_003212.1 similar to high-affinity zinc ABC transporter (ATP-binding protein); hypothetical protein 182672 1128593 lin0192 Listeria innocua Clip11262 hypothetical protein NP_469537.1 181968 D 272626 CDS NP_469538.1 16799270 1128595 182621..183427 1 NC_003212.1 similar to high-affinity zinc ABC transporter (membrane protein); hypothetical protein 183427 1128595 lin0193 Listeria innocua Clip11262 hypothetical protein NP_469538.1 182621 D 272626 CDS NP_469539.1 16799271 1128596 complement(183431..184111) 1 NC_003212.1 lin0194; hypothetical protein 184111 1128596 lin0194 Listeria innocua Clip11262 hypothetical protein NP_469539.1 183431 R 272626 CDS NP_469540.1 16799272 1128597 184384..186723 1 NC_003212.1 similar to ATP dependent helicase; hypothetical protein 186723 1128597 lin0195 Listeria innocua Clip11262 hypothetical protein NP_469540.1 184384 D 272626 CDS NP_469541.1 16799273 1128598 186768..187580 1 NC_003212.1 hypothetical protein 187580 1128598 lin0196 Listeria innocua Clip11262 hypothetical protein NP_469541.1 186768 D 272626 CDS NP_469542.1 16799274 1128599 187817..188893 1 NC_003212.1 similar to chloromuconate cycloisomerase ykfB of Bacillus subtilis; hypothetical protein 188893 1128599 lin0197 Listeria innocua Clip11262 hypothetical protein NP_469542.1 187817 D 272626 CDS NP_469543.1 16799275 1128600 188910..189788 1 NC_003212.1 P45 related protein 189788 1128600 lin0198 Listeria innocua Clip11262 P45 related protein NP_469543.1 188910 D 272626 CDS NP_469544.1 16799276 1128601 189804..190577 1 NC_003212.1 some similarities to probable beta-lactamase; hypothetical protein 190577 1128601 lin0199 Listeria innocua Clip11262 hypothetical protein NP_469544.1 189804 D 272626 CDS NP_469545.1 16799277 1128602 190599..192248 1 NC_003212.1 similar to ABC transporter oligopeptide-binding protein; hypothetical protein 192248 1128602 lin0200 Listeria innocua Clip11262 hypothetical protein NP_469545.1 190599 D 272626 CDS NP_469546.1 16799278 1128603 192263..193081 1 NC_003212.1 similar to dipeptide ABC transporter; hypothetical protein 193081 1128603 lin0201 Listeria innocua Clip11262 hypothetical protein NP_469546.1 192263 D 272626 CDS NP_469547.1 16799279 1128604 193292..195337 1 NC_003212.1 surface anchored protein 195337 1128604 lin0202 Listeria innocua Clip11262 surface anchored protein NP_469547.1 193292 D 272626 CDS NP_469548.1 16799280 1128605 195525..197285 1 NC_003212.1 peptidoglycan binding protein 197285 1128605 lin0203 Listeria innocua Clip11262 peptidoglycan binding protein NP_469548.1 195525 D 272626 CDS NP_469549.1 16799281 1128606 complement(197333..198169) 1 NC_003212.1 lin0204; hypothetical protein 198169 1128606 lin0204 Listeria innocua Clip11262 hypothetical protein NP_469549.1 197333 R 272626 CDS NP_469550.1 16799282 1128607 198383..199375 1 NC_003212.1 similar to Bacillus subtilis DNA polymerase III (delta' subunit); catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 199375 1128607 lin0205 Listeria innocua Clip11262 DNA polymerase III subunit delta' NP_469550.1 198383 D 272626 CDS NP_469551.1 16799283 1128608 199381..200214 1 NC_003212.1 lin0206; hypothetical protein 200214 1128608 lin0206 Listeria innocua Clip11262 hypothetical protein NP_469551.1 199381 D 272626 CDS NP_469552.1 16799284 1128609 200225..200614 1 NC_003212.1 similar to Bacillus subtilis YabA protein; in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 200614 1128609 lin0207 Listeria innocua Clip11262 DNA replication intiation control protein YabA NP_469552.1 200225 D 272626 CDS NP_469553.1 16799285 1128610 200672..201424 1 NC_003212.1 hypothetical protein 201424 1128610 lin0208 Listeria innocua Clip11262 hypothetical protein NP_469553.1 200672 D 272626 CDS NP_469554.1 16799286 1128612 201408..201680 1 NC_003212.1 similar to Bacillus subtilis YazA protein; GIY-YIG nuclease superfamily protein 201680 1128612 lin0209 Listeria innocua Clip11262 GIY-YIG nuclease superfamily protein NP_469554.1 201408 D 272626 CDS NP_469555.1 16799287 1128614 201677..202558 1 NC_003212.1 hypothetical protein 202558 1128614 lin0210 Listeria innocua Clip11262 hypothetical protein NP_469555.1 201677 D 272626 CDS NP_469556.1 16799288 1128615 complement(202604..202888) 1 NC_003212.1 similar to Bacillus subtilis transcription regulatory protein AbrB; hypothetical protein 202888 1128615 lin0211 Listeria innocua Clip11262 hypothetical protein NP_469556.1 202604 R 272626 CDS NP_469557.1 16799289 1128616 203003..203860 1 NC_003212.1 similar to a glucose uptake protein; hypothetical protein 203860 1128616 lin0212 Listeria innocua Clip11262 hypothetical protein NP_469557.1 203003 D 272626 CDS NP_469558.1 16799290 1128617 203929..205188 1 NC_003212.1 lin0213; hypothetical protein 205188 1128617 lin0213 Listeria innocua Clip11262 hypothetical protein NP_469558.1 203929 D 272626 CDS NP_469559.1 16799291 1128618 complement(205249..206493) 1 NC_003212.1 peptidoglycan binding protein 206493 1128618 lin0214 Listeria innocua Clip11262 peptidoglycan binding protein NP_469559.1 205249 R 272626 CDS NP_469560.1 16799292 1128619 206770..207630 1 NC_003212.1 similar to glucose uptake protein; hypothetical protein 207630 1128619 lin0215 Listeria innocua Clip11262 hypothetical protein NP_469560.1 206770 D 272626 CDS NP_469561.1 16799293 1128620 207702..209696 1 NC_003212.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 209696 metS 1128620 metS Listeria innocua Clip11262 methionyl-tRNA synthetase NP_469561.1 207702 D 272626 CDS NP_469562.1 16799294 1128621 209860..211074 1 NC_003212.1 similar to xylose repressor; hypothetical protein 211074 1128621 lin0217 Listeria innocua Clip11262 hypothetical protein NP_469562.1 209860 D 272626 CDS NP_469563.1 16799295 1128622 211109..211987 1 NC_003212.1 similar to sugar ABC transporters, permease proteins; hypothetical protein 211987 1128622 lin0218 Listeria innocua Clip11262 hypothetical protein NP_469563.1 211109 D 272626 CDS NP_469564.1 16799296 1128624 211987..212835 1 NC_003212.1 similar to sugar ABC transporter, permease protein; hypothetical protein 212835 1128624 lin0219 Listeria innocua Clip11262 hypothetical protein NP_469564.1 211987 D 272626 CDS NP_469565.1 16799297 1128625 212863..214119 1 NC_003212.1 similar to sugar ABC transporter, sugar-binding protein; hypothetical protein 214119 1128625 lin0220 Listeria innocua Clip11262 hypothetical protein NP_469565.1 212863 D 272626 CDS NP_469566.1 16799298 1128626 214202..217504 1 NC_003212.1 similar to alpha-xylosidase and alpha-glucosidase; hypothetical protein 217504 1128626 lin0221 Listeria innocua Clip11262 hypothetical protein NP_469566.1 214202 D 272626 CDS NP_469567.1 16799299 1128628 217507..219798 1 NC_003212.1 similar to alpha-glucosidase; hypothetical protein 219798 1128628 lin0222 Listeria innocua Clip11262 hypothetical protein NP_469567.1 217507 D 272626 CDS NP_469568.1 16799300 1128630 219802..221463 1 NC_003212.1 similar to oligo-1,6-glucosidase; hypothetical protein 221463 1128630 lin0223 Listeria innocua Clip11262 hypothetical protein NP_469568.1 219802 D 272626 CDS NP_469569.1 16799301 1128631 221563..222336 1 NC_003212.1 hypothetical protein 222336 1128631 lin0224 Listeria innocua Clip11262 hypothetical protein NP_469569.1 221563 D 272626 CDS NP_469570.1 16799302 1128632 222628..223845 1 NC_003212.1 similar to Bacillus subtilis YabE protein; hypothetical protein 223845 1128632 lin0225 Listeria innocua Clip11262 hypothetical protein NP_469570.1 222628 D 272626 CDS NP_469571.1 16799303 1128633 223947..224522 1 NC_003212.1 similar to Bacillus subtilis YabF protein; hypothetical protein 224522 1128633 lin0226 Listeria innocua Clip11262 hypothetical protein NP_469571.1 223947 D 272626 CDS NP_469572.1 16799304 1128635 224515..225402 1 NC_003212.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 225402 ksgA 1128635 ksgA Listeria innocua Clip11262 dimethyladenosine transferase NP_469572.1 224515 D 272626 CDS NP_469573.1 16799305 1128636 225522..225779 1 NC_003212.1 highly similar to Bacillus subtilis Veg protein; hypothetical protein 225779 1128636 lin0228 Listeria innocua Clip11262 hypothetical protein NP_469573.1 225522 D 272626 CDS NP_469574.1 16799306 1128637 225918..226793 1 NC_003212.1 similar to Bacillus subtilis YabH protein; An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 226793 ipk 1128637 ipk Listeria innocua Clip11262 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase NP_469574.1 225918 D 272626 CDS NP_469575.1 16799307 1128638 226815..227552 1 NC_003212.1 similar to a putative phospho-beta-glucosidase; hypothetical protein 227552 1128638 lin0230 Listeria innocua Clip11262 hypothetical protein NP_469575.1 226815 D 272626 CDS NP_469576.1 16799308 1128639 227716..228534 1 NC_003212.1 similar to PurR, transcription repressor of purine operon of Bacillus subtilis; pur operon repressor 228534 1128639 lin0231 Listeria innocua Clip11262 pur operon repressor NP_469576.1 227716 D 272626 CDS NP_469577.1 16799309 1128640 228707..229384 1 NC_003212.1 lin0232; hypothetical protein 229384 1128640 lin0232 Listeria innocua Clip11262 hypothetical protein NP_469577.1 228707 D 272626 CDS NP_469578.1 16799310 1128641 229433..230125 1 NC_003212.1 ABC transporter, ATP-binding protein 230125 1128641 lin0233 Listeria innocua Clip11262 ABC transporter, ATP-binding protein NP_469578.1 229433 D 272626 CDS NP_469579.1 16799311 1128642 230122..231330 1 NC_003212.1 similar to membrane protein (putative ABC transporter component); hypothetical protein 231330 1128642 lin0234 Listeria innocua Clip11262 hypothetical protein NP_469579.1 230122 D 272626 CDS NP_469580.1 16799312 1128643 232017..232325 1 NC_003212.1 similar to Bacillus subtilis SpoVG protein; stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 232325 1128643 lin0235 Listeria innocua Clip11262 regulatory protein SpoVG NP_469580.1 232017 D 272626 CDS NP_469581.1 16799313 1128644 232444..232752 1 NC_003212.1 similar to Bacillus subtilis SpoVG protein; stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 232752 1128644 lin0236 Listeria innocua Clip11262 regulatory protein SpoVG NP_469581.1 232444 D 272626 CDS NP_469582.1 16799314 1128645 233141..234514 1 NC_003212.1 highly similar to UDP-N-acetylglucosamine pyrophosphorylase; forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 234514 glmU 1128645 glmU Listeria innocua Clip11262 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase NP_469582.1 233141 D 272626 CDS NP_469583.1 16799315 1128646 234565..235521 1 NC_003212.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 235521 prs 1128646 prs Listeria innocua Clip11262 ribose-phosphate pyrophosphokinase NP_469583.1 234565 D 272626 CDS NP_469584.1 16799316 1128647 235882..236343 1 NC_003212.1 Uncharacterized lipoprotein Lin0239 precursor.; hypothetical protein 236343 1128647 lin0239 Listeria innocua Clip11262 hypothetical protein NP_469584.1 235882 D 272626 CDS NP_469585.1 16799317 1128648 complement(236392..236724) 1 NC_003212.1 hypothetical protein 236724 1128648 lin0240 Listeria innocua Clip11262 hypothetical protein NP_469585.1 236392 R 272626 CDS NP_469586.1 16799318 1128649 complement(236791..237465) 1 NC_003212.1 lin0241; hypothetical protein 237465 1128649 lin0241 Listeria innocua Clip11262 hypothetical protein NP_469586.1 236791 R 272626 CDS NP_469587.1 16799319 1128650 complement(237542..238483) 1 NC_003212.1 similar to L-lactate dehydrogenase; Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 238483 ldh 1128650 ldh Listeria innocua Clip11262 L-lactate dehydrogenase NP_469587.1 237542 R 272626 CDS NP_469588.1 16799320 1128651 238777..239400 1 NC_003212.1 similar to Bacillus subtilis general stress protein; the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 239400 1128651 lin0243 Listeria innocua Clip11262 50S ribosomal protein L25/general stress protein Ctc NP_469588.1 238777 D 272626 CDS NP_469589.1 16799321 1128652 239491..240075 1 NC_003212.1 lin0244; hypothetical protein 240075 1128652 lin0244 Listeria innocua Clip11262 hypothetical protein NP_469589.1 239491 D 272626 CDS NP_469590.1 16799322 1128653 240182..240736 1 NC_003212.1 similar to peptidyl-tRNA hydrolase; Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 240736 1128653 lin0245 Listeria innocua Clip11262 peptidyl-tRNA hydrolase NP_469590.1 240182 D 272626 CDS NP_469591.1 16799323 1128654 240860..244399 1 NC_003212.1 transcription-repair coupling factor 244399 mfd 1128654 mfd Listeria innocua Clip11262 transcription-repair coupling factor NP_469591.1 240860 D 272626 CDS NP_469592.1 16799324 1128655 244430..246019 1 NC_003212.1 conserved membrane-spanning protein; hypothetical protein 246019 1128655 lin0247 Listeria innocua Clip11262 hypothetical protein NP_469592.1 244430 D 272626 CDS NP_469593.1 16799325 1128656 246042..246320 1 NC_003212.1 highly similar to Bacillus subtilis YabO protein; hypothetical protein 246320 1128656 lin0248 Listeria innocua Clip11262 hypothetical protein NP_469593.1 246042 D 272626 CDS NP_469594.1 16799326 1128657 246546..246932 1 NC_003212.1 similar to Bacillus subtilis DivIC protein; hypothetical protein 246932 1128657 lin0249 Listeria innocua Clip11262 hypothetical protein NP_469594.1 246546 D 272626 CDS NP_469595.1 16799327 1128658 247083..247511 1 NC_003212.1 hypothetical protein 247511 1128658 lin0250 Listeria innocua Clip11262 hypothetical protein NP_469595.1 247083 D 272626 CDS NP_469596.1 16799328 1128659 247622..249568 1 NC_003212.1 hypothetical protein 249568 1128659 lin0251 Listeria innocua Clip11262 hypothetical protein NP_469596.1 247622 D 272626 CDS NP_469597.1 16799329 1128660 249916..251988 1 NC_003212.1 highly similar to cell division protein ftsH; hypothetical protein 251988 1128660 lin0252 Listeria innocua Clip11262 hypothetical protein NP_469597.1 249916 D 272626 CDS NP_469598.1 16799330 1128661 252104..252883 1 NC_003212.1 Type III pantothenate kinase; type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 252883 1128661 lin0253 Listeria innocua Clip11262 pantothenate kinase NP_469598.1 252104 D 272626 CDS NP_469599.1 16799331 1128662 252899..253783 1 NC_003212.1 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33); becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 253783 hslO 1128662 hslO Listeria innocua Clip11262 Hsp33-like chaperonin NP_469599.1 252899 D 272626 CDS NP_469600.1 16799332 1128663 253900..254826 1 NC_003212.1 highly similar to cysteine synthase; hypothetical protein 254826 1128663 lin0255 Listeria innocua Clip11262 hypothetical protein NP_469600.1 253900 D 272626 CDS NP_469601.1 16799333 1128664 255724..256539 1 NC_003212.1 highly similar to dihydropteroate synthases; hypothetical protein 256539 1128664 lin0256 Listeria innocua Clip11262 hypothetical protein NP_469601.1 255724 D 272626 CDS NP_469602.1 16799334 1128665 256553..256927 1 NC_003212.1 highly similar to dihydroneopterin aldolase; hypothetical protein 256927 1128665 lin0257 Listeria innocua Clip11262 hypothetical protein NP_469602.1 256553 D 272626 CDS NP_469603.1 16799335 1128666 256920..257399 1 NC_003212.1 similar to 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase; hypothetical protein 257399 1128666 lin0258 Listeria innocua Clip11262 hypothetical protein NP_469603.1 256920 D 272626 CDS NP_469604.1 16799336 1128667 257475..258470 1 NC_003212.1 hypothetical protein 258470 1128667 lin0259 Listeria innocua Clip11262 hypothetical protein NP_469604.1 257475 D 272626 CDS NP_469605.1 16799337 1128668 258585..260081 1 NC_003212.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 260081 lysS 1128668 lysS Listeria innocua Clip11262 lysyl-tRNA synthetase NP_469605.1 258585 D 272626 CDS NP_469606.1 16799338 1128675 271618..272076 1 NC_003212.1 highly similar to transcription repressor of class III stress genes (CtsR); hypothetical protein 272076 1128675 lin0261 Listeria innocua Clip11262 hypothetical protein NP_469606.1 271618 D 272626 CDS NP_469607.1 16799339 1128676 272089..272607 1 NC_003212.1 similar to Bacillus subtilis YacH protein; hypothetical protein 272607 1128676 lin0262 Listeria innocua Clip11262 hypothetical protein NP_469607.1 272089 D 272626 CDS NP_469608.1 16799340 1128677 272604..273626 1 NC_003212.1 similar to arginine kinase; ATP:guanido phosphotransferase 273626 1128677 lin0263 Listeria innocua Clip11262 ATP:guanido phosphotransferase NP_469608.1 272604 D 272626 CDS NP_469609.1 16799341 1128678 273655..276117 1 NC_003212.1 endopeptidase Clp ATP-binding chain C 276117 clpC 1128678 clpC Listeria innocua Clip11262 endopeptidase Clp ATP-binding chain C NP_469609.1 273655 D 272626 CDS NP_469610.1 16799342 1128679 276272..277645 1 NC_003212.1 similar to DNA repair protein Sms; Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 277645 1128679 lin0265 Listeria innocua Clip11262 DNA repair protein RadA NP_469610.1 276272 D 272626 CDS NP_469611.1 16799343 1128680 277779..278852 1 NC_003212.1 highly similar to Bacillus subtilis YacL protein; hypothetical protein 278852 1128680 lin0266 Listeria innocua Clip11262 hypothetical protein NP_469611.1 277779 D 272626 CDS NP_469612.1 16799344 1128681 278872..279570 1 NC_003212.1 similar to nucleotidylyl transferase, pyrophosphorylase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 279570 ispD 1128681 ispD Listeria innocua Clip11262 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NP_469612.1 278872 D 272626 CDS NP_469613.1 16799345 1128682 279563..280036 1 NC_003212.1 similar to Bacillus subtilis YacN protein; catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 280036 ispF 1128682 ispF Listeria innocua Clip11262 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase NP_469613.1 279563 D 272626 CDS NP_469614.1 16799346 1128683 280055..281530 1 NC_003212.1 highly similar to glutamyl-tRNA synthetase; Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 281530 gltX 1128683 gltX Listeria innocua Clip11262 glutamyl-tRNA synthetase NP_469614.1 280055 D 272626 CDS NP_469615.1 16799347 1128684 281929..282543 1 NC_003212.1 similar to serine O-acetyltransferase; hypothetical protein 282543 1128684 lin0270 Listeria innocua Clip11262 hypothetical protein NP_469615.1 281929 D 272626 CDS NP_469616.1 16799348 1128686 282550..283965 1 NC_003212.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 283965 cysS 1128686 cysS Listeria innocua Clip11262 cysteinyl-tRNA synthetase NP_469616.1 282550 D 272626 CDS NP_469617.1 16799349 1128687 283969..284379 1 NC_003212.1 highly similar to Bacillus subtilis YazC protein; hypothetical protein 284379 1128687 lin0272 Listeria innocua Clip11262 hypothetical protein NP_469617.1 283969 D 272626 CDS NP_469618.1 16799350 1128688 284379..285134 1 NC_003212.1 similar to conserved hypothetical proteins like to Bacillus subtilis YacO protein; hypothetical protein 285134 1128688 lin0273 Listeria innocua Clip11262 hypothetical protein NP_469618.1 284379 D 272626 CDS NP_469619.1 16799351 1128690 285137..285649 1 NC_003212.1 similar to Bacillus subtilis Yacp protein; hypothetical protein 285649 1128690 lin0274 Listeria innocua Clip11262 hypothetical protein NP_469619.1 285137 D 272626 CDS NP_469620.1 16799352 1128691 285730..286335 1 NC_003212.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 286335 sigH 1128691 sigH Listeria innocua Clip11262 RNA polymerase factor sigma-70 NP_469620.1 285730 D 272626 CDS NP_469621.1 16799353 1128692 286439..286588 1 NC_003212.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 286588 rpmG 1128692 rpmG Listeria innocua Clip11262 50S ribosomal protein L33 NP_469621.1 286439 D 272626 CDS NP_469622.1 16799354 1128693 286608..286787 1 NC_003212.1 highly similar to preprotein translocase subunit; forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 286787 secE 1128693 secE Listeria innocua Clip11262 preprotein translocase subunit SecE NP_469622.1 286608 D 272626 CDS NP_469623.1 16799355 1128694 286917..287450 1 NC_003212.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 287450 nusG 1128694 nusG Listeria innocua Clip11262 transcription antitermination protein NusG NP_469623.1 286917 D 272626 CDS NP_469624.1 16799356 1128695 287505..287975 1 NC_003212.1 lin0279; hypothetical protein 287975 1128695 lin0279 Listeria innocua Clip11262 hypothetical protein NP_469624.1 287505 D 272626 CDS NP_469625.1 16799357 1128696 288102..288527 1 NC_003212.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 288527 rplK 1128696 rplK Listeria innocua Clip11262 50S ribosomal protein L11 NP_469625.1 288102 D 272626 CDS NP_469626.1 16799358 1128697 288567..289256 1 NC_003212.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 289256 rplA 1128697 rplA Listeria innocua Clip11262 50S ribosomal protein L1 NP_469626.1 288567 D 272626 CDS NP_469627.1 16799359 1128698 289504..290004 1 NC_003212.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 290004 rplJ 1128698 rplJ Listeria innocua Clip11262 50S ribosomal protein L10 NP_469627.1 289504 D 272626 CDS NP_469628.1 16799360 1128699 290083..290445 1 NC_003212.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 290445 rplL 1128699 rplL Listeria innocua Clip11262 50S ribosomal protein L7/L12 NP_469628.1 290083 D 272626 CDS NP_469629.1 16799361 1128700 290588..291193 1 NC_003212.1 hypothetical protein 291193 1128700 lin0284 Listeria innocua Clip11262 hypothetical protein NP_469629.1 290588 D 272626 CDS NP_469630.1 16799362 1128701 291763..295317 1 NC_003212.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 295317 rpoB 1128701 rpoB Listeria innocua Clip11262 DNA-directed RNA polymerase subunit beta NP_469630.1 291763 D 272626 CDS NP_469631.1 16799363 1128702 295487..299092 1 NC_003212.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 299092 rpoC 1128702 rpoC Listeria innocua Clip11262 DNA-directed RNA polymerase subunit beta' NP_469631.1 295487 D 272626 CDS NP_469632.1 16799364 1128703 299168..299713 1 NC_003212.1 hypothetical protein 299713 1128703 lin0287 Listeria innocua Clip11262 hypothetical protein NP_469632.1 299168 D 272626 CDS NP_469633.1 16799365 1128704 299779..301239 1 NC_003212.1 similar to phospho-beta-glucosidase; hypothetical protein 301239 1128704 lin0288 Listeria innocua Clip11262 hypothetical protein NP_469633.1 299779 D 272626 CDS NP_469634.1 16799366 1128705 301402..302538 1 NC_003212.1 similar to succinyldiaminopimelate desuccinylase; dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica; succinyl-diaminopimelate desuccinylase 302538 1128705 lin0289 Listeria innocua Clip11262 succinyl-diaminopimelate desuccinylase NP_469634.1 301402 D 272626 CDS NP_469635.1 16799367 1128706 302762..304279 1 NC_003212.1 internalin-like protein 304279 1128706 lin0290 Listeria innocua Clip11262 internalin-like protein NP_469635.1 302762 D 272626 CDS NP_469636.1 16799368 1128707 304380..304796 1 NC_003212.1 similar to transcriptional regulators; hypothetical protein 304796 1128707 lin0291 Listeria innocua Clip11262 hypothetical protein NP_469636.1 304380 D 272626 CDS NP_469637.1 16799369 1128709 304803..305762 1 NC_003212.1 similar to other proteins; hypothetical protein 305762 1128709 lin0292 Listeria innocua Clip11262 hypothetical protein NP_469637.1 304803 D 272626 CDS NP_469638.1 16799370 1128710 305833..306468 1 NC_003212.1 similar to phosphoglycerate mutase; hypothetical protein 306468 1128710 lin0293 Listeria innocua Clip11262 hypothetical protein NP_469638.1 305833 D 272626 CDS NP_469639.1 16799371 1128711 306552..308438 1 NC_003212.1 similar to transporter; hypothetical protein 308438 1128711 lin0294 Listeria innocua Clip11262 hypothetical protein NP_469639.1 306552 D 272626 CDS NP_469640.1 16799372 1128712 complement(308467..309552) 1 NC_003212.1 similar to internalin proteins; hypothetical protein 309552 1128712 lin0295 Listeria innocua Clip11262 hypothetical protein NP_469640.1 308467 R 272626 CDS NP_469641.1 16799373 1128713 complement(309687..310313) 1 NC_003212.1 lin0296; hypothetical protein 310313 1128713 lin0296 Listeria innocua Clip11262 hypothetical protein NP_469641.1 309687 R 272626 CDS NP_469642.1 16799374 1128714 complement(310314..311750) 1 NC_003212.1 highly similar to phospho-beta-glucosidase; hypothetical protein 311750 1128714 lin0297 Listeria innocua Clip11262 hypothetical protein NP_469642.1 310314 R 272626 CDS NP_469643.1 16799375 1128716 complement(311870..312682) 1 NC_003212.1 conserved hypothetical protein similar to Bacillus subtilis YxeH protein; hypothetical protein 312682 1128716 lin0298 Listeria innocua Clip11262 hypothetical protein NP_469643.1 311870 R 272626 CDS NP_469644.1 16799376 1128717 312819..313322 1 NC_003212.1 lin0299; hypothetical protein 313322 1128717 lin0299 Listeria innocua Clip11262 hypothetical protein NP_469644.1 312819 D 272626 CDS NP_469645.1 16799377 1128718 complement(313357..314022) 1 NC_003212.1 lin0300; hypothetical protein 314022 1128718 lin0300 Listeria innocua Clip11262 hypothetical protein NP_469645.1 313357 R 272626 CDS NP_469646.1 16799378 1128719 complement(314264..315106) 1 NC_003212.1 hypothetical protein 315106 1128719 lin0301 Listeria innocua Clip11262 hypothetical protein NP_469646.1 314264 R 272626 CDS NP_469647.1 16799379 1128720 complement(315123..315944) 1 NC_003212.1 hypothetical protein 315944 1128720 lin0302 Listeria innocua Clip11262 hypothetical protein NP_469647.1 315123 R 272626 CDS NP_469648.1 16799380 1128721 316061..317032 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 317032 1128721 lin0303 Listeria innocua Clip11262 hypothetical protein NP_469648.1 316061 D 272626 CDS NP_469649.1 16799381 1128722 complement(317072..318172) 1 NC_003212.1 similar to sugar ABC transporter, ATP-binding protein; hypothetical protein 318172 1128722 lin0304 Listeria innocua Clip11262 hypothetical protein NP_469649.1 317072 R 272626 CDS NP_469650.1 16799382 1128723 318463..320613 1 NC_003212.1 highly similar to anaerobic ribonucleoside-triphosphate reductase; Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 320613 1128723 lin0305 Listeria innocua Clip11262 anaerobic ribonucleoside triphosphate reductase NP_469650.1 318463 D 272626 CDS NP_469651.1 16799383 1128725 320606..321157 1 NC_003212.1 highly similar to anaerobic ribonucleotide reductase activator protein; hypothetical protein 321157 1128725 lin0306 Listeria innocua Clip11262 hypothetical protein NP_469651.1 320606 D 272626 CDS NP_469652.1 16799384 1128726 321395..322054 1 NC_003212.1 similar to ABC transporters (ATP-binding protein); hypothetical protein 322054 1128726 lin0307 Listeria innocua Clip11262 hypothetical protein NP_469652.1 321395 D 272626 CDS NP_469653.1 16799385 1128728 322056..322841 1 NC_003212.1 hypothetical protein 322841 1128728 lin0308 Listeria innocua Clip11262 hypothetical protein NP_469653.1 322056 D 272626 CDS NP_469654.1 16799386 1128729 complement(322904..323575) 1 NC_003212.1 lin0309; hypothetical protein 323575 1128729 lin0309 Listeria innocua Clip11262 hypothetical protein NP_469654.1 322904 R 272626 CDS NP_469655.1 16799387 1128730 complement(323725..324504) 1 NC_003212.1 hypothetical protein 324504 1128730 lin0310 Listeria innocua Clip11262 hypothetical protein NP_469655.1 323725 R 272626 CDS NP_469656.1 16799388 1128731 complement(324595..325257) 1 NC_003212.1 similar to ABC transporter permease protein; hypothetical protein 325257 1128731 lin0311 Listeria innocua Clip11262 hypothetical protein NP_469656.1 324595 R 272626 CDS NP_469657.1 16799389 1128732 complement(325254..326270) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 326270 1128732 lin0312 Listeria innocua Clip11262 hypothetical protein NP_469657.1 325254 R 272626 CDS NP_469658.1 16799390 1128734 complement(326285..327106) 1 NC_003212.1 putative lipoprotein 327106 1128734 lin0313 Listeria innocua Clip11262 putative lipoprotein NP_469658.1 326285 R 272626 CDS NP_469659.1 16799391 1128735 327489..328670 1 NC_003212.1 similar to aminotransferase; produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 328670 1128735 lin0314 Listeria innocua Clip11262 transaminase NP_469659.1 327489 D 272626 CDS NP_469660.1 16799392 1128736 328882..329595 1 NC_003212.1 similar to two-component response regulator; hypothetical protein 329595 1128736 lin0315 Listeria innocua Clip11262 hypothetical protein NP_469660.1 328882 D 272626 CDS NP_469661.1 16799393 1128737 329779..331611 1 NC_003212.1 similar to two-component sensor histidine kinase; hypothetical protein 331611 1128737 lin0316 Listeria innocua Clip11262 hypothetical protein NP_469661.1 329779 D 272626 CDS NP_469662.1 16799394 1128739 331608..332930 1 NC_003212.1 similar to Bacillus subtilis YycH protein; hypothetical protein 332930 1128739 lin0317 Listeria innocua Clip11262 hypothetical protein NP_469662.1 331608 D 272626 CDS NP_469663.1 16799395 1128741 332933..333772 1 NC_003212.1 similar to Bacillus subtilis YycI protein; hypothetical protein 333772 1128741 lin0318 Listeria innocua Clip11262 hypothetical protein NP_469663.1 332933 D 272626 CDS NP_469664.1 16799396 1128742 333890..334720 1 NC_003212.1 conserved hypothetical protein similar to Bacillus subtilis YycJ protein; hypothetical protein 334720 1128742 lin0319 Listeria innocua Clip11262 hypothetical protein NP_469664.1 333890 D 272626 CDS NP_469665.1 16799397 1128743 334818..336317 1 NC_003212.1 similar to heat-shock protein htrA serine protease; hypothetical protein 336317 1128743 lin0320 Listeria innocua Clip11262 hypothetical protein NP_469665.1 334818 D 272626 CDS NP_469666.1 16799398 1128744 337002..337481 1 NC_003212.1 conserved hypothetical protein, highly similar to Bacillus subtilis YydA proteinYyd; SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 337481 1128744 lin0321 Listeria innocua Clip11262 rRNA large subunit methyltransferase NP_469666.1 337002 D 272626 CDS NP_469667.1 16799399 1128745 complement(337513..338376) 1 NC_003212.1 similar to transcription regulator LysR-gltR family; hypothetical protein 338376 1128745 lin0322 Listeria innocua Clip11262 hypothetical protein NP_469667.1 337513 R 272626 CDS NP_469668.1 16799400 1128746 338495..339232 1 NC_003212.1 similar to FMN-containing NADPH-linked nitro/flavin reductase; hypothetical protein 339232 1128746 lin0323 Listeria innocua Clip11262 hypothetical protein NP_469668.1 338495 D 272626 CDS NP_469669.1 16799401 1128747 339443..340081 1 NC_003212.1 lin0324; hypothetical protein 340081 1128747 lin0324 Listeria innocua Clip11262 hypothetical protein NP_469669.1 339443 D 272626 CDS NP_469670.1 16799402 1128748 complement(340087..341958) 1 NC_003212.1 similar to transcriptional antiterminator (BglG family); hypothetical protein 341958 1128748 lin0325 Listeria innocua Clip11262 hypothetical protein NP_469670.1 340087 R 272626 CDS NP_469671.1 16799403 1128749 complement(342057..343370) 1 NC_003212.1 similar to PTS beta-glucoside-specific enzyme IIC component; hypothetical protein 343370 1128749 lin0326 Listeria innocua Clip11262 hypothetical protein NP_469671.1 342057 R 272626 CDS NP_469672.1 16799404 1128750 complement(343375..343665) 1 NC_003212.1 similar to PTS beta-glucoside-specific enzyme IIB component; hypothetical protein 343665 1128750 lin0327 Listeria innocua Clip11262 hypothetical protein NP_469672.1 343375 R 272626 CDS NP_469673.1 16799405 1128752 complement(343682..345073) 1 NC_003212.1 similar to phospho-beta-glucosidase and phospho-beta-galactosidase; hypothetical protein 345073 1128752 lin0328 Listeria innocua Clip11262 hypothetical protein NP_469673.1 343682 R 272626 CDS NP_469674.1 16799406 1128753 complement(345066..345407) 1 NC_003212.1 similar to PTS beta-glucoside-specific enzyme IIA component; hypothetical protein 345407 1128753 lin0329 Listeria innocua Clip11262 hypothetical protein NP_469674.1 345066 R 272626 CDS NP_469675.1 16799407 1128755 345574..345858 1 NC_003212.1 lin0330; hypothetical protein 345858 1128755 lin0330 Listeria innocua Clip11262 hypothetical protein NP_469675.1 345574 D 272626 CDS NP_469676.1 16799408 1128756 345892..346443 1 NC_003212.1 putative secreted, lysin rich protein 346443 1128756 lin0331 Listeria innocua Clip11262 putative secreted, lysin rich protein NP_469676.1 345892 D 272626 CDS NP_469677.1 16799409 1128757 complement(346543..347760) 1 NC_003212.1 similar to putative permeases; hypothetical protein 347760 1128757 lin0332 Listeria innocua Clip11262 hypothetical protein NP_469677.1 346543 R 272626 CDS NP_469678.1 16799410 1128758 347988..349070 1 NC_003212.1 similar to low specificity L-allo-threonine aldolase; hypothetical protein 349070 1128758 lin0333 Listeria innocua Clip11262 hypothetical protein NP_469678.1 347988 D 272626 CDS NP_469679.1 16799411 1128759 complement(349128..349514) 1 NC_003212.1 lin0334; hypothetical protein 349514 1128759 lin0334 Listeria innocua Clip11262 hypothetical protein NP_469679.1 349128 R 272626 CDS NP_469680.1 16799412 1128760 349628..350773 1 NC_003212.1 lin0335; hypothetical protein 350773 1128760 lin0335 Listeria innocua Clip11262 hypothetical protein NP_469680.1 349628 D 272626 CDS NP_469681.1 16799413 1128761 350788..351216 1 NC_003212.1 lin0336; hypothetical protein 351216 1128761 lin0336 Listeria innocua Clip11262 hypothetical protein NP_469681.1 350788 D 272626 CDS NP_469682.1 16799414 1128762 351479..353140 1 NC_003212.1 hypothetical protein 353140 1128762 lin0337 Listeria innocua Clip11262 hypothetical protein NP_469682.1 351479 D 272626 CDS NP_469683.1 16799415 1128763 353186..353986 1 NC_003212.1 lin0338; hypothetical protein 353986 1128763 lin0338 Listeria innocua Clip11262 hypothetical protein NP_469683.1 353186 D 272626 CDS NP_469684.1 16799416 1128764 354060..354845 1 NC_003212.1 hypothetical protein 354845 1128764 lin0339 Listeria innocua Clip11262 hypothetical protein NP_469684.1 354060 D 272626 CDS NP_469685.1 16799417 1128765 355068..355742 1 NC_003212.1 similar to thiamin biosynthesis protein; hypothetical protein 355742 1128765 lin0340 Listeria innocua Clip11262 hypothetical protein NP_469685.1 355068 D 272626 CDS NP_469686.1 16799418 1128767 355735..356544 1 NC_003212.1 similar to hydroxyethylthiazole kinase (ThiM); catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 356544 1128767 lin0341 Listeria innocua Clip11262 hydroxyethylthiazole kinase NP_469686.1 355735 D 272626 CDS NP_469687.1 16799419 1128769 356541..357344 1 NC_003212.1 similar to phosphomethylpyrimidine kinase (ThiD); hypothetical protein 357344 1128769 lin0342 Listeria innocua Clip11262 hypothetical protein NP_469687.1 356541 D 272626 CDS NP_469688.1 16799420 1128771 357341..357985 1 NC_003212.1 similar to thiamin-phosphate pyrophosphorylase (ThiE); Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 357985 thiE 1128771 thiE Listeria innocua Clip11262 thiamine-phosphate pyrophosphorylase NP_469688.1 357341 D 272626 CDS NP_469689.1 16799421 1128772 complement(358011..359426) 1 NC_003212.1 similar to phospho-beta-glucosidase; hypothetical protein 359426 1128772 lin0344 Listeria innocua Clip11262 hypothetical protein NP_469689.1 358011 R 272626 CDS NP_469690.1 16799422 1128773 complement(359634..359825) 1 NC_003212.1 lin0345; hypothetical protein 359825 1128773 lin0345 Listeria innocua Clip11262 hypothetical protein NP_469690.1 359634 R 272626 CDS NP_469691.1 16799423 1128774 360148..360807 1 NC_003212.1 hypothetical protein 360807 1128774 lin0346 Listeria innocua Clip11262 hypothetical protein NP_469691.1 360148 D 272626 CDS NP_469692.1 16799424 1128775 360974..361366 1 NC_003212.1 hypothetical protein 361366 1128775 lin0347 Listeria innocua Clip11262 hypothetical protein NP_469692.1 360974 D 272626 CDS NP_469693.1 16799425 1128776 complement(361400..362173) 1 NC_003212.1 hypothetical protein 362173 1128776 lin0348 Listeria innocua Clip11262 hypothetical protein NP_469693.1 361400 R 272626 CDS NP_469694.1 16799426 1128777 362328..362789 1 NC_003212.1 lin0349; hypothetical protein 362789 1128777 lin0349 Listeria innocua Clip11262 hypothetical protein NP_469694.1 362328 D 272626 CDS NP_469695.1 16799427 1128778 363055..363957 1 NC_003212.1 similar to transcriptional regulators; hypothetical protein 363957 1128778 lin0350 Listeria innocua Clip11262 hypothetical protein NP_469695.1 363055 D 272626 CDS NP_469696.1 16799428 1128779 364120..364959 1 NC_003212.1 similar to transcriptional regulators; hypothetical protein 364959 1128779 lin0351 Listeria innocua Clip11262 hypothetical protein NP_469696.1 364120 D 272626 CDS NP_469697.1 16799429 1128780 <365172..369221 1 NC_003212.1 similar to cell surface proteins (LPXTG motif); hypothetical protein 369221 1128780 lin0352 Listeria innocua Clip11262 hypothetical protein NP_469697.1 <365172 D 272626 CDS NP_469698.1 16799430 1128781 369359..370039 1 NC_003212.1 lin0353; hypothetical protein 370039 1128781 lin0353 Listeria innocua Clip11262 hypothetical protein NP_469698.1 369359 D 272626 CDS NP_469699.1 16799431 1128782 complement(370223..372040) 1 NC_003212.1 similar to internalin, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 372040 1128782 lin0354 Listeria innocua Clip11262 hypothetical protein NP_469699.1 370223 R 272626 CDS NP_469700.1 16799432 1128783 372553..372837 1 NC_003212.1 lin0355; hypothetical protein 372837 1128783 lin0355 Listeria innocua Clip11262 hypothetical protein NP_469700.1 372553 D 272626 CDS NP_469701.1 16799433 1128785 372838..373206 1 NC_003212.1 lin0356; hypothetical protein 373206 1128785 lin0356 Listeria innocua Clip11262 hypothetical protein NP_469701.1 372838 D 272626 CDS NP_469702.1 16799434 1128787 373203..373742 1 NC_003212.1 lin0357; hypothetical protein 373742 1128787 lin0357 Listeria innocua Clip11262 hypothetical protein NP_469702.1 373203 D 272626 CDS NP_469703.1 16799435 1128788 373864..374235 1 NC_003212.1 weakly similar to inorganic pyrophosphatase; hypothetical protein 374235 1128788 lin0358 Listeria innocua Clip11262 hypothetical protein NP_469703.1 373864 D 272626 CDS NP_469704.1 16799436 1128789 complement(374315..374647) 1 NC_003212.1 lin0359; hypothetical protein 374647 1128789 lin0359 Listeria innocua Clip11262 hypothetical protein NP_469704.1 374315 R 272626 CDS NP_469705.1 16799437 1128790 complement(374713..376710) 1 NC_003212.1 similar to transketolase; hypothetical protein 376710 1128790 lin0360 Listeria innocua Clip11262 hypothetical protein NP_469705.1 374713 R 272626 CDS NP_469706.1 16799438 1128791 complement(376712..377368) 1 NC_003212.1 similar to transaldolase; similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 377368 1128791 lin0361 Listeria innocua Clip11262 putative translaldolase NP_469706.1 376712 R 272626 CDS NP_469707.1 16799439 1128793 complement(377415..378179) 1 NC_003212.1 similar to dehydrogenase/reductase; short chain dehydrogenase 378179 1128793 lin0362 Listeria innocua Clip11262 short chain dehydrogenase NP_469707.1 377415 R 272626 CDS NP_469708.1 16799440 1128794 complement(378204..378650) 1 NC_003212.1 similar to sugar-phosphate isomerase; hypothetical protein 378650 1128794 lin0363 Listeria innocua Clip11262 hypothetical protein NP_469708.1 378204 R 272626 CDS NP_469709.1 16799441 1128795 complement(378657..379421) 1 NC_003212.1 similar to triosephosphate isomerase; hypothetical protein 379421 1128795 lin0364 Listeria innocua Clip11262 hypothetical protein NP_469709.1 378657 R 272626 CDS NP_469710.1 16799442 1128797 complement(379425..380075) 1 NC_003212.1 similar to dihydroxyacetone kinase; hypothetical protein 380075 1128797 lin0365 Listeria innocua Clip11262 hypothetical protein NP_469710.1 379425 R 272626 CDS NP_469711.1 16799443 1128799 complement(380097..381092) 1 NC_003212.1 similar to dihydroxyacetone kinase; hypothetical protein 381092 1128799 lin0366 Listeria innocua Clip11262 hypothetical protein NP_469711.1 380097 R 272626 CDS NP_469712.1 16799444 1128800 complement(381114..381455) 1 NC_003212.1 lin0367; hypothetical protein 381455 1128800 lin0367 Listeria innocua Clip11262 hypothetical protein NP_469712.1 381114 R 272626 CDS NP_469713.1 16799445 1128801 complement(381471..381902) 1 NC_003212.1 lin0368; hypothetical protein 381902 1128801 lin0368 Listeria innocua Clip11262 hypothetical protein NP_469713.1 381471 R 272626 CDS NP_469714.1 16799446 1128802 complement(381987..382364) 1 NC_003212.1 phosphotransferase mannnose-specific family component IIA 382364 1128802 lin0369 Listeria innocua Clip11262 phosphotransferase mannnose-specific family component IIA NP_469714.1 381987 R 272626 CDS NP_469715.1 16799447 1128803 382547..383311 1 NC_003212.1 highly similar to regulatory proteins (DeoR family); hypothetical protein 383311 1128803 lin0370 Listeria innocua Clip11262 hypothetical protein NP_469715.1 382547 D 272626 CDS NP_469716.1 16799448 1128804 383377..383787 1 NC_003212.1 hypothetical protein 383787 1128804 lin0371 Listeria innocua Clip11262 hypothetical protein NP_469716.1 383377 D 272626 CDS NP_469717.1 16799449 1128805 383886..385856 1 NC_003212.1 cell surface protein 385856 1128805 lin0372 Listeria innocua Clip11262 cell surface protein NP_469717.1 383886 D 272626 CDS NP_469718.1 16799450 1128806 complement(385898..387424) 1 NC_003212.1 similar to fatty-acid--CoA ligase; hypothetical protein 387424 1128806 lin0373 Listeria innocua Clip11262 hypothetical protein NP_469718.1 385898 R 272626 CDS NP_469719.1 16799451 1128807 387663..389183 1 NC_003212.1 similar to Flavocytochrome C Fumarate Reductase chain A; Reduces fumarate to succinate in anaerobic bacterial respiration; fumarate reductase flavoprotein subunit 389183 1128807 lin0374 Listeria innocua Clip11262 fumarate reductase flavoprotein subunit NP_469719.1 387663 D 272626 CDS NP_469720.1 16799452 1128808 389356..390372 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 390372 1128808 lin0375 Listeria innocua Clip11262 hypothetical protein NP_469720.1 389356 D 272626 CDS NP_469721.1 16799453 1128809 390573..391019 1 NC_003212.1 similar to PTS system, enzyme IIA component; hypothetical protein 391019 1128809 lin0376 Listeria innocua Clip11262 hypothetical protein NP_469721.1 390573 D 272626 CDS NP_469722.1 16799454 1128810 391033..392427 1 NC_003212.1 similar to PTS system, fructose-specific enzyme IIBC component; hypothetical protein 392427 1128810 lin0377 Listeria innocua Clip11262 hypothetical protein NP_469722.1 391033 D 272626 CDS NP_469723.1 16799455 1128812 392427..393287 1 NC_003212.1 similar to D-fructose-1,6-biphosphate aldolase; hypothetical protein 393287 1128812 lin0378 Listeria innocua Clip11262 hypothetical protein NP_469723.1 392427 D 272626 CDS NP_469724.1 16799456 1128813 393344..394114 1 NC_003212.1 similar to transcriptional regulator (DeoR family); hypothetical protein 394114 1128813 lin0379 Listeria innocua Clip11262 hypothetical protein NP_469724.1 393344 D 272626 CDS NP_469725.1 16799457 1128814 complement(394146..394889) 1 NC_003212.1 similar to conserved hypothetical integral membrane protein; hypothetical protein 394889 1128814 lin0380 Listeria innocua Clip11262 hypothetical protein NP_469725.1 394146 R 272626 CDS NP_469726.1 16799458 1128815 complement(394886..395065) 1 NC_003212.1 similar to conserved hypothetical protein; hypothetical protein 395065 1128815 lin0381 Listeria innocua Clip11262 hypothetical protein NP_469726.1 394886 R 272626 CDS NP_469727.1 16799459 1128816 complement(395139..395768) 1 NC_003212.1 similar to Salmonella typhimurium peptidase E; hypothetical protein 395768 1128816 lin0382 Listeria innocua Clip11262 hypothetical protein NP_469727.1 395139 R 272626 CDS NP_469728.1 16799460 1128817 395862..396809 1 NC_003212.1 similar to transcription regulator; hypothetical protein 396809 1128817 lin0383 Listeria innocua Clip11262 hypothetical protein NP_469728.1 395862 D 272626 CDS NP_469729.1 16799461 1128818 396938..398422 1 NC_003212.1 similar to conserved hypothetical protein; hypothetical protein 398422 1128818 lin0384 Listeria innocua Clip11262 hypothetical protein NP_469729.1 396938 D 272626 CDS NP_469730.1 16799462 1128820 398419..399579 1 NC_003212.1 conserved hypothetical protein, putative lipoprotein; hypothetical protein 399579 1128820 lin0385 Listeria innocua Clip11262 hypothetical protein NP_469730.1 398419 D 272626 CDS NP_469731.1 16799463 1128821 399597..400862 1 NC_003212.1 conserved hypothetical protein similar to Bacillus subtilis YwbN protein; hypothetical protein 400862 1128821 lin0386 Listeria innocua Clip11262 hypothetical protein NP_469731.1 399597 D 272626 CDS NP_469732.1 16799464 1128822 400935..401444 1 NC_003212.1 similar to different proteins; hypothetical protein 401444 1128822 lin0387 Listeria innocua Clip11262 hypothetical protein NP_469732.1 400935 D 272626 CDS NP_469733.1 16799465 1128823 401541..402260 1 NC_003212.1 conserved hypothetical protein, highly similar to Bacillus subtilis YeeI protein; hypothetical protein 402260 1128823 lin0388 Listeria innocua Clip11262 hypothetical protein NP_469733.1 401541 D 272626 CDS NP_469734.1 16799466 1128824 402297..402632 1 NC_003212.1 hypothetical protein 402632 1128824 lin0389 Listeria innocua Clip11262 hypothetical protein NP_469734.1 402297 D 272626 CDS NP_469735.1 16799467 1128825 complement(402673..403386) 1 NC_003212.1 similar to transcription regulator (GntR family); hypothetical protein 403386 1128825 lin0390 Listeria innocua Clip11262 hypothetical protein NP_469735.1 402673 R 272626 CDS NP_469736.1 16799468 1128826 403543..404985 1 NC_003212.1 similar to beta-glucosidase; hypothetical protein 404985 1128826 lin0391 Listeria innocua Clip11262 hypothetical protein NP_469736.1 403543 D 272626 CDS NP_469737.1 16799469 1128828 404978..406312 1 NC_003212.1 similar to PTS betaglucoside-specific enzyme IIC component; hypothetical protein 406312 1128828 lin0392 Listeria innocua Clip11262 hypothetical protein NP_469737.1 404978 D 272626 CDS NP_469738.1 16799470 1128829 406330..406632 1 NC_003212.1 similar to PTS betaglucoside-specific enzyme IIB component; hypothetical protein 406632 1128829 lin0393 Listeria innocua Clip11262 hypothetical protein NP_469738.1 406330 D 272626 CDS NP_469739.1 16799471 1128830 406719..406913 1 NC_003212.1 lin0394; hypothetical protein 406913 1128830 lin0394 Listeria innocua Clip11262 hypothetical protein NP_469739.1 406719 D 272626 CDS NP_469740.1 16799472 1128831 complement(406952..407872) 1 NC_003212.1 similar to putative transcription regulator; hypothetical protein 407872 1128831 lin0395 Listeria innocua Clip11262 hypothetical protein NP_469740.1 406952 R 272626 CDS NP_469741.1 16799473 1128832 407973..408392 1 NC_003212.1 lin0396; hypothetical protein 408392 1128832 lin0396 Listeria innocua Clip11262 hypothetical protein NP_469741.1 407973 D 272626 CDS NP_469742.1 16799474 1128833 408916..409278 1 NC_003212.1 lin0397; hypothetical protein 409278 1128833 lin0397 Listeria innocua Clip11262 hypothetical protein NP_469742.1 408916 D 272626 CDS NP_469743.1 16799475 1128835 409269..410879 1 NC_003212.1 lin0398; hypothetical protein 410879 1128835 lin0398 Listeria innocua Clip11262 hypothetical protein NP_469743.1 409269 D 272626 CDS NP_469744.1 16799476 1128837 410882..411640 1 NC_003212.1 lin0399; hypothetical protein 411640 1128837 lin0399 Listeria innocua Clip11262 hypothetical protein NP_469744.1 410882 D 272626 CDS NP_469745.1 16799477 1128838 complement(411681..412442) 1 NC_003212.1 similar to Bacillus subtilis transcription repressor of myo-inositol catabolism operon IolR; hypothetical protein 412442 1128838 lin0400 Listeria innocua Clip11262 hypothetical protein NP_469745.1 411681 R 272626 CDS NP_469746.1 16799478 1128839 412638..414104 1 NC_003212.1 highly similar to Bacillus subtilis methylmalonate-semialdehyde dehydrogenase IolA; hypothetical protein 414104 1128839 lin0401 Listeria innocua Clip11262 hypothetical protein NP_469746.1 412638 D 272626 CDS NP_469747.1 16799479 1128840 414117..414938 1 NC_003212.1 similar to Bacillus subtilis IolB protein; hypothetical protein 414938 1128840 lin0402 Listeria innocua Clip11262 hypothetical protein NP_469747.1 414117 D 272626 CDS NP_469748.1 16799480 1128841 414955..415932 1 NC_003212.1 similar to Bacillus subtilis IolC protein and to fructokinase; hypothetical protein 415932 1128841 lin0403 Listeria innocua Clip11262 hypothetical protein NP_469748.1 414955 D 272626 CDS NP_469749.1 16799481 1128842 415944..417860 1 NC_003212.1 similar to Bacillus subtilis IolD protein, to acetolactate synthase; hypothetical protein 417860 1128842 lin0404 Listeria innocua Clip11262 hypothetical protein NP_469749.1 415944 D 272626 CDS NP_469750.1 16799482 1128843 417992..418390 1 NC_003212.1 similar to Bacillus subtilis YhdG protein; hypothetical protein 418390 1128843 lin0405 Listeria innocua Clip11262 hypothetical protein NP_469750.1 417992 D 272626 CDS NP_469751.1 16799483 1128844 418455..418823 1 NC_003212.1 lin0406; hypothetical protein 418823 1128844 lin0406 Listeria innocua Clip11262 hypothetical protein NP_469751.1 418455 D 272626 CDS NP_469752.1 16799484 1128845 complement(418848..419963) 1 NC_003212.1 low temperature requirement protein A 419963 ltrA 1128845 ltrA Listeria innocua Clip11262 low temperature requirement protein A NP_469752.1 418848 R 272626 CDS NP_469753.1 16799485 1128846 420093..420758 1 NC_003212.1 similar to uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 420758 1128846 lin0408 Listeria innocua Clip11262 uracil-DNA glycosylase NP_469753.1 420093 D 272626 CDS NP_469754.1 16799486 1128847 420923..421222 1 NC_003212.1 lin0409; hypothetical protein 421222 1128847 lin0409 Listeria innocua Clip11262 hypothetical protein NP_469754.1 420923 D 272626 CDS NP_469755.1 16799487 1128849 421219..422163 1 NC_003212.1 highly similar to Bacillus subtilis YqfA protein; hypothetical protein 422163 1128849 lin0410 Listeria innocua Clip11262 hypothetical protein NP_469755.1 421219 D 272626 CDS NP_469756.1 16799488 1128850 422198..422650 1 NC_003212.1 lin0411; hypothetical protein 422650 1128850 lin0411 Listeria innocua Clip11262 hypothetical protein NP_469756.1 422198 D 272626 CDS NP_469757.1 16799489 1128851 422796..423479 1 NC_003212.1 similar to L. monocytogenes extracellular P60 protein; hypothetical protein 423479 1128851 lin0412 Listeria innocua Clip11262 hypothetical protein NP_469757.1 422796 D 272626 CDS NP_469758.1 16799490 1128852 423541..423966 1 NC_003212.1 weakly similar to blasticidin S-acetyltransferase; hypothetical protein 423966 1128852 lin0413 Listeria innocua Clip11262 hypothetical protein NP_469758.1 423541 D 272626 CDS NP_469759.1 16799491 1128853 complement(423970..424770) 1 NC_003212.1 similar to 1-pyrroline-5-carboxylate reductase (ProC); catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 424770 proC 1128853 proC Listeria innocua Clip11262 pyrroline-5-carboxylate reductase NP_469759.1 423970 R 272626 CDS NP_469760.1 16799492 1128854 425715..426947 1 NC_003212.1 cell surface protein 426947 1128854 lin0415 Listeria innocua Clip11262 cell surface protein NP_469760.1 425715 D 272626 CDS NP_469761.1 16799493 1128855 427069..427719 1 NC_003212.1 similar to transcription regulator; hypothetical protein 427719 1128855 lin0416 Listeria innocua Clip11262 hypothetical protein NP_469761.1 427069 D 272626 CDS NP_469762.1 16799494 1128856 427737..428363 1 NC_003212.1 hypothetical protein 428363 1128856 lin0417 Listeria innocua Clip11262 hypothetical protein NP_469762.1 427737 D 272626 CDS NP_469763.1 16799495 1128857 428381..429055 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 429055 1128857 lin0418 Listeria innocua Clip11262 hypothetical protein NP_469763.1 428381 D 272626 CDS NP_469764.1 16799496 1128859 429040..430218 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 430218 1128859 lin0419 Listeria innocua Clip11262 hypothetical protein NP_469764.1 429040 D 272626 CDS NP_469765.1 16799497 1128860 430451..430933 1 NC_003212.1 hypothetical protein 430933 1128860 lin0420 Listeria innocua Clip11262 hypothetical protein NP_469765.1 430451 D 272626 CDS NP_469766.1 16799498 1128861 431103..431561 1 NC_003212.1 similar to phosphotransferase system enzyme IIA; hypothetical protein 431561 1128861 lin0421 Listeria innocua Clip11262 hypothetical protein NP_469766.1 431103 D 272626 CDS NP_469767.1 16799499 1128863 431558..431890 1 NC_003212.1 similar to fructose-specific phosphotransferase enzyme IIB; hypothetical protein 431890 1128863 lin0422 Listeria innocua Clip11262 hypothetical protein NP_469767.1 431558 D 272626 CDS NP_469768.1 16799500 1128865 431894..433006 1 NC_003212.1 similar to fructose-specific phosphotransferase enzyme IIC; hypothetical protein 433006 1128865 lin0423 Listeria innocua Clip11262 hypothetical protein NP_469768.1 431894 D 272626 CDS NP_469769.1 16799501 1128866 433028..435655 1 NC_003212.1 highly similar to E. col YbgG protein, a putative sugar hydrolase; alpha-mannosidase 435655 1128866 lin0424 Listeria innocua Clip11262 alpha-mannosidase NP_469769.1 433028 D 272626 CDS NP_469770.1 16799502 1128867 435688..437622 1 NC_003212.1 similar to transcriptional antiterminator (BglG family); hypothetical protein 437622 1128867 lin0425 Listeria innocua Clip11262 hypothetical protein NP_469770.1 435688 D 272626 CDS NP_469771.1 16799503 1128868 437756..438172 1 NC_003212.1 lin0426; hypothetical protein 438172 1128868 lin0426 Listeria innocua Clip11262 hypothetical protein NP_469771.1 437756 D 272626 CDS NP_469772.1 16799504 1128870 438163..438549 1 NC_003212.1 lin0427; hypothetical protein 438549 1128870 lin0427 Listeria innocua Clip11262 hypothetical protein NP_469772.1 438163 D 272626 CDS NP_469773.1 16799505 1128871 438657..439664 1 NC_003212.1 similar to phosphate transport protein; hypothetical protein 439664 1128871 lin0428 Listeria innocua Clip11262 hypothetical protein NP_469773.1 438657 D 272626 CDS NP_469774.1 16799506 1128872 439680..440060 1 NC_003212.1 similar to Bacillus subtilis YyaH protein; hypothetical protein 440060 1128872 lin0429 Listeria innocua Clip11262 hypothetical protein NP_469774.1 439680 D 272626 CDS NP_469775.1 16799507 1128873 440129..440521 1 NC_003212.1 lin0430; hypothetical protein 440521 1128873 lin0430 Listeria innocua Clip11262 hypothetical protein NP_469775.1 440129 D 272626 CDS NP_469776.1 16799508 1128874 440534..440956 1 NC_003212.1 lin0431; hypothetical protein 440956 1128874 lin0431 Listeria innocua Clip11262 hypothetical protein NP_469776.1 440534 D 272626 CDS NP_469777.1 16799509 1128875 complement(440999..443599) 1 NC_003212.1 similar to phosphoenolpyruvate synthase; catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 443599 1128875 lin0432 Listeria innocua Clip11262 phosphoenolpyruvate synthase NP_469777.1 440999 R 272626 CDS NP_469778.1 16799510 1128876 complement(443800..444675) 1 NC_003212.1 lin0433; hypothetical protein 444675 1128876 lin0433 Listeria innocua Clip11262 hypothetical protein NP_469778.1 443800 R 272626 CDS NP_469779.1 16799511 1128877 445109..445300 1 NC_003212.1 lin0434; hypothetical protein 445300 1128877 lin0434 Listeria innocua Clip11262 hypothetical protein NP_469779.1 445109 D 272626 CDS NP_469780.1 16799512 1128878 445327..446136 1 NC_003212.1 hypothetical protein 446136 1128878 lin0435 Listeria innocua Clip11262 hypothetical protein NP_469780.1 445327 D 272626 CDS NP_469781.1 16799513 1128879 446430..447830 1 NC_003212.1 similar to endo-1,4-beta-xylanase; hypothetical protein 447830 1128879 lin0436 Listeria innocua Clip11262 hypothetical protein NP_469781.1 446430 D 272626 CDS NP_469782.1 16799514 1128880 447957..448160 1 NC_003212.1 similar to putative transcription regulator; hypothetical protein 448160 1128880 lin0437 Listeria innocua Clip11262 hypothetical protein NP_469782.1 447957 D 272626 CDS NP_469783.1 16799515 1128882 448162..448572 1 NC_003212.1 lin0438; hypothetical protein 448572 1128882 lin0438 Listeria innocua Clip11262 hypothetical protein NP_469783.1 448162 D 272626 CDS NP_469784.1 16799516 1128883 complement(448625..448924) 1 NC_003212.1 lin0439; hypothetical protein 448924 1128883 lin0439 Listeria innocua Clip11262 hypothetical protein NP_469784.1 448625 R 272626 CDS NP_469785.1 16799517 1128884 449152..449964 1 NC_003212.1 hypothetical protein 449964 1128884 lin0440 Listeria innocua Clip11262 hypothetical protein NP_469785.1 449152 D 272626 CDS NP_469786.1 16799518 1128885 complement(450030..451280) 1 NC_003212.1 similar to rod shape-determining protein RodA; hypothetical protein 451280 1128885 lin0441 Listeria innocua Clip11262 hypothetical protein NP_469786.1 450030 R 272626 CDS NP_469787.1 16799519 1128886 complement(451277..451708) 1 NC_003212.1 part of sigC operon that is induced by temperature upshift; lineage-specific thermal regulator protein 451708 lstR 1128886 lstR Listeria innocua Clip11262 lineage-specific thermal regulator protein NP_469787.1 451277 R 272626 CDS NP_469788.1 16799520 1128888 complement(451711..452259) 1 NC_003212.1 similar to RNA polymerase ECF-type sigma factor; part of sigC operon induced by temperature upshift; RNA polymerase factor sigma C 452259 1128888 lin0443 Listeria innocua Clip11262 RNA polymerase factor sigma C NP_469788.1 451711 R 272626 CDS NP_469789.1 16799521 1128889 complement(452439..453296) 1 NC_003212.1 similar to Staphylococcus xylosus glucose uptake protein; hypothetical protein 453296 1128889 lin0444 Listeria innocua Clip11262 hypothetical protein NP_469789.1 452439 R 272626 CDS NP_469790.1 16799522 1128890 453477..455420 1 NC_003212.1 similar to transcription antiterminator BglG family; hypothetical protein 455420 1128890 lin0445 Listeria innocua Clip11262 hypothetical protein NP_469790.1 453477 D 272626 CDS NP_469791.1 16799523 1128892 455420..455884 1 NC_003212.1 similar to PTS fructose-specific enzyme IIA component; hypothetical protein 455884 1128892 lin0446 Listeria innocua Clip11262 hypothetical protein NP_469791.1 455420 D 272626 CDS NP_469792.1 16799524 1128894 456214..457320 1 NC_003212.1 similar to PTS fructose-specific enzyme IIC component; hypothetical protein 457320 1128894 lin0448 Listeria innocua Clip11262 hypothetical protein NP_469792.1 456214 D 272626 CDS NP_469793.1 16799525 1128895 457336..459918 1 NC_003212.1 similar to sugar hydrolase; hypothetical protein 459918 1128895 lin0449 Listeria innocua Clip11262 hypothetical protein NP_469793.1 457336 D 272626 CDS NP_469794.1 16799526 1128896 complement(459941..460816) 1 NC_003212.1 similar to transcriptional regulator (LysR family); hypothetical protein 460816 1128896 lin0450 Listeria innocua Clip11262 hypothetical protein NP_469794.1 459941 R 272626 CDS NP_469795.1 16799527 1128897 460934..461503 1 NC_003212.1 similar to acetyltransferase; hypothetical protein 461503 1128897 lin0451 Listeria innocua Clip11262 hypothetical protein NP_469795.1 460934 D 272626 CDS NP_469796.1 16799528 1128898 461517..462263 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 462263 1128898 lin0452 Listeria innocua Clip11262 hypothetical protein NP_469796.1 461517 D 272626 CDS NP_469797.1 16799529 1128899 462375..462884 1 NC_003212.1 lin0453; hypothetical protein 462884 1128899 lin0453 Listeria innocua Clip11262 hypothetical protein NP_469797.1 462375 D 272626 CDS NP_469798.1 16799530 1128900 463138..469641 1 NC_003212.1 similar to cell wall-associated protein precursor wapA (Bacillus subtilis); hypothetical protein 469641 1128900 lin0454 Listeria innocua Clip11262 hypothetical protein NP_469798.1 463138 D 272626 CDS NP_469799.1 16799531 1128901 470254..470808 1 NC_003212.1 lin0455; hypothetical protein 470808 1128901 lin0455 Listeria innocua Clip11262 hypothetical protein NP_469799.1 470254 D 272626 CDS NP_469800.1 16799532 1128902 471205..471768 1 NC_003212.1 lin0456; hypothetical protein 471768 1128902 lin0456 Listeria innocua Clip11262 hypothetical protein NP_469800.1 471205 D 272626 CDS NP_469801.1 16799533 1128903 472040..478081 1 NC_003212.1 peptidoglycan binding protein 478081 1128903 lin0457 Listeria innocua Clip11262 peptidoglycan binding protein NP_469801.1 472040 D 272626 CDS NP_469802.1 16799534 1128904 complement(478256..478723) 1 NC_003212.1 hypothetical protein 478723 1128904 lin0458 Listeria innocua Clip11262 hypothetical protein NP_469802.1 478256 R 272626 CDS NP_469803.1 16799535 1128905 478839..479684 1 NC_003212.1 hypothetical protein 479684 1128905 lin0459 Listeria innocua Clip11262 hypothetical protein NP_469803.1 478839 D 272626 CDS NP_469804.1 16799536 1128906 complement(479719..481002) 1 NC_003212.1 weakly similar to a module of peptide synthetase; hypothetical protein 481002 1128906 lin0460 Listeria innocua Clip11262 hypothetical protein NP_469804.1 479719 R 272626 CDS NP_469805.1 16799537 1128908 complement(481129..483165) 1 NC_003212.1 similar to penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase); hypothetical protein 483165 1128908 lin0461 Listeria innocua Clip11262 hypothetical protein NP_469805.1 481129 R 272626 CDS NP_469806.1 16799538 1128909 483337..483639 1 NC_003212.1 lin0462; hypothetical protein 483639 1128909 lin0462 Listeria innocua Clip11262 hypothetical protein NP_469806.1 483337 D 272626 CDS NP_469807.1 16799539 1128910 483778..484707 1 NC_003212.1 similar to Bacillus subtilis transcription regulator LytR; hypothetical protein 484707 1128910 lin0463 Listeria innocua Clip11262 hypothetical protein NP_469807.1 483778 D 272626 CDS NP_469808.1 16799540 1128911 complement(484770..485702) 1 NC_003212.1 similar to putative transcription regulator; hypothetical protein 485702 1128911 lin0464 Listeria innocua Clip11262 hypothetical protein NP_469808.1 484770 R 272626 CDS NP_469809.1 16799541 1128912 485841..486479 1 NC_003212.1 conserved hypothetical protein, similar to yoaZ Bacillus subtilis; hypothetical protein 486479 1128912 lin0465 Listeria innocua Clip11262 hypothetical protein NP_469809.1 485841 D 272626 CDS NP_469810.1 16799542 1128913 486659..487384 1 NC_003212.1 lin0466; hypothetical protein 487384 1128913 lin0466 Listeria innocua Clip11262 hypothetical protein NP_469810.1 486659 D 272626 CDS NP_469811.1 16799543 1128914 complement(487428..488093) 1 NC_003212.1 hypothetical protein 488093 1128914 lin0467 Listeria innocua Clip11262 hypothetical protein NP_469811.1 487428 R 272626 CDS NP_469812.1 16799544 1128915 complement(488113..488877) 1 NC_003212.1 lin0468; hypothetical protein 488877 1128915 lin0468 Listeria innocua Clip11262 hypothetical protein NP_469812.1 488113 R 272626 CDS NP_469813.1 16799545 1128916 complement(489016..491181) 1 NC_003212.1 hypothetical protein 491181 1128916 lin0469 Listeria innocua Clip11262 hypothetical protein NP_469813.1 489016 R 272626 CDS NP_469814.1 16799546 1128917 complement(491178..492326) 1 NC_003212.1 hypothetical protein 492326 1128917 lin0470 Listeria innocua Clip11262 hypothetical protein NP_469814.1 491178 R 272626 CDS NP_469815.1 16799547 1128919 complement(492331..493278) 1 NC_003212.1 conserved hypothetical protein similar to Bacillus subtilis YeaC; hypothetical protein 493278 1128919 lin0471 Listeria innocua Clip11262 hypothetical protein NP_469815.1 492331 R 272626 CDS NP_469816.1 16799548 1128920 493434..495029 1 NC_003212.1 hypothetical protein 495029 1128920 lin0472 Listeria innocua Clip11262 hypothetical protein NP_469816.1 493434 D 272626 CDS NP_469817.1 16799549 1128921 495162..496445 1 NC_003212.1 similar to permeases; hypothetical protein 496445 1128921 lin0473 Listeria innocua Clip11262 hypothetical protein NP_469817.1 495162 D 272626 CDS NP_469818.1 16799550 1128923 496446..497546 1 NC_003212.1 hypothetical protein 497546 1128923 lin0474 Listeria innocua Clip11262 hypothetical protein NP_469818.1 496446 D 272626 CDS NP_469819.1 16799551 1128925 497539..499089 1 NC_003212.1 similar to hydantoinase; hypothetical protein 499089 1128925 lin0475 Listeria innocua Clip11262 hypothetical protein NP_469819.1 497539 D 272626 CDS NP_469820.1 16799552 1128926 499836..500888 1 NC_003212.1 lin0476; hypothetical protein 500888 1128926 lin0476 Listeria innocua Clip11262 hypothetical protein NP_469820.1 499836 D 272626 CDS NP_469821.1 16799553 1128927 501337..503835 1 NC_003212.1 lin0477; hypothetical protein 503835 1128927 lin0477 Listeria innocua Clip11262 hypothetical protein NP_469821.1 501337 D 272626 CDS NP_469822.1 16799554 1128928 504274..505497 1 NC_003212.1 lin0478; hypothetical protein 505497 1128928 lin0478 Listeria innocua Clip11262 hypothetical protein NP_469822.1 504274 D 272626 CDS NP_469823.1 16799555 1128929 506066..506248 1 NC_003212.1 lin0479; hypothetical protein 506248 1128929 lin0479 Listeria innocua Clip11262 hypothetical protein NP_469823.1 506066 D 272626 CDS NP_469824.1 16799556 1128930 506276..506446 1 NC_003212.1 putative secreted protein 506446 1128930 lin0480 Listeria innocua Clip11262 putative secreted protein NP_469824.1 506276 D 272626 CDS NP_469825.1 16799557 1128932 506961..507521 1 NC_003212.1 similar to putative transcriptional regulator; hypothetical protein 507521 1128932 lin0482 Listeria innocua Clip11262 hypothetical protein NP_469825.1 506961 D 272626 CDS NP_469826.1 16799558 1128933 507631..509331 1 NC_003212.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 509331 1128933 lin0483 Listeria innocua Clip11262 myosin-cross-reactive antigen NP_469826.1 507631 D 272626 CDS NP_469827.1 16799559 1128934 509482..510585 1 NC_003212.1 similar to conserved hypothetical proteins, highly similar to Bacillus subtilis YloN protein; 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 510585 1128934 lin0484 Listeria innocua Clip11262 ribosomal RNA large subunit methyltransferase N NP_469827.1 509482 D 272626 CDS NP_469828.1 16799560 1128935 510674..511153 1 NC_003212.1 lin0485; hypothetical protein 511153 1128935 lin0485 Listeria innocua Clip11262 hypothetical protein NP_469828.1 510674 D 272626 CDS NP_469829.1 16799561 1128936 511234..511779 1 NC_003212.1 hypothetical protein 511779 1128936 lin0486 Listeria innocua Clip11262 hypothetical protein NP_469829.1 511234 D 272626 CDS NP_469830.1 16799562 1128937 511865..512230 1 NC_003212.1 lin0487; iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdG 512230 1128937 lin0487 Listeria innocua Clip11262 heme-degrading monooxygenase IsdG NP_469830.1 511865 D 272626 CDS NP_469831.1 16799563 1128938 512398..512973 1 NC_003212.1 lin0488; hypothetical protein 512973 1128938 lin0488 Listeria innocua Clip11262 hypothetical protein NP_469831.1 512398 D 272626 CDS NP_469832.1 16799564 1128939 513038..513208 1 NC_003212.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 513208 rpmF 1128939 rpmF Listeria innocua Clip11262 50S ribosomal protein L32 NP_469832.1 513038 D 272626 CDS NP_469833.1 16799565 1128940 513300..514028 1 NC_003212.1 lin0490; hypothetical protein 514028 1128940 lin0490 Listeria innocua Clip11262 hypothetical protein NP_469833.1 513300 D 272626 CDS NP_469834.1 16799566 1128941 complement(514066..514959) 1 NC_003212.1 similar to transcriptional regulator (LysR family); hypothetical protein 514959 1128941 lin0491 Listeria innocua Clip11262 hypothetical protein NP_469834.1 514066 R 272626 CDS NP_469835.1 16799567 1128942 515157..517151 1 NC_003212.1 similar to NADH:flavin oxidoreductase; hypothetical protein 517151 1128942 lin0492 Listeria innocua Clip11262 hypothetical protein NP_469835.1 515157 D 272626 CDS NP_469836.1 16799568 1128943 517251..518126 1 NC_003212.1 similar to shikimate 5-dehydrogenase; AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 518126 aroE 1128943 aroE Listeria innocua Clip11262 shikimate 5-dehydrogenase NP_469836.1 517251 D 272626 CDS NP_469837.1 16799569 1128944 518192..518950 1 NC_003212.1 similar to 3-dehydroquinate dehydratase; catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 518950 aroD 1128944 aroD Listeria innocua Clip11262 3-dehydroquinate dehydratase NP_469837.1 518192 D 272626 CDS NP_469838.1 16799570 1128945 519047..519640 1 NC_003212.1 weakly similar to esterase; hypothetical protein 519640 1128945 lin0495 Listeria innocua Clip11262 hypothetical protein NP_469838.1 519047 D 272626 CDS NP_469839.1 16799571 1128946 519826..520785 1 NC_003212.1 similar to transmembrane protein; hypothetical protein 520785 1128946 lin0496 Listeria innocua Clip11262 hypothetical protein NP_469839.1 519826 D 272626 CDS NP_469840.1 16799572 1128947 520860..521084 1 NC_003212.1 similar to Bacillus subtilis YnzC protein; hypothetical protein 521084 1128947 lin0497 Listeria innocua Clip11262 hypothetical protein NP_469840.1 520860 D 272626 CDS NP_469841.1 16799573 1128948 521248..521697 1 NC_003212.1 similar to ribose 5-phosphate isomerase; hypothetical protein 521697 1128948 lin0498 Listeria innocua Clip11262 hypothetical protein NP_469841.1 521248 D 272626 CDS NP_469842.1 16799574 1128949 521694..522362 1 NC_003212.1 similar to ribulose-5-phosphate 3 epimerase; hypothetical protein 522362 1128949 lin0499 Listeria innocua Clip11262 hypothetical protein NP_469842.1 521694 D 272626 CDS NP_469843.1 16799575 1128950 522369..523019 1 NC_003212.1 similar to transaldolase; hypothetical protein 523019 1128950 lin0500 Listeria innocua Clip11262 hypothetical protein NP_469843.1 522369 D 272626 CDS NP_469844.1 16799576 1128951 523128..525188 1 NC_003212.1 similar to transcription antiterminator BglG family; hypothetical protein 525188 1128951 lin0501 Listeria innocua Clip11262 hypothetical protein NP_469844.1 523128 D 272626 CDS NP_469845.1 16799577 1128953 525192..525794 1 NC_003212.1 similar to putative sugar-phosphate isomerase; hypothetical protein 525794 1128953 lin0502 Listeria innocua Clip11262 hypothetical protein NP_469845.1 525192 D 272626 CDS NP_469846.1 16799578 1128954 525822..526289 1 NC_003212.1 similar to PTS fructose-specific enzyme IIA component; hypothetical protein 526289 1128954 lin0503 Listeria innocua Clip11262 hypothetical protein NP_469846.1 525822 D 272626 CDS NP_469847.1 16799579 1128955 526306..526704 1 NC_003212.1 lin0504; hypothetical protein 526704 1128955 lin0504 Listeria innocua Clip11262 hypothetical protein NP_469847.1 526306 D 272626 CDS NP_469848.1 16799580 1128956 526715..527365 1 NC_003212.1 similar to ribulose-5-phosphate 3-epimerase; hypothetical protein 527365 1128956 lin0505 Listeria innocua Clip11262 hypothetical protein NP_469848.1 526715 D 272626 CDS NP_469849.1 16799581 1128958 527362..528408 1 NC_003212.1 similar to polyol (sorbitol) dehydrogenase; hypothetical protein 528408 1128958 lin0506 Listeria innocua Clip11262 hypothetical protein NP_469849.1 527362 D 272626 CDS NP_469850.1 16799582 1128959 528424..528717 1 NC_003212.1 similar to PTS system, Galactitol-specific IIB component; hypothetical protein 528717 1128959 lin0507 Listeria innocua Clip11262 hypothetical protein NP_469850.1 528424 D 272626 CDS NP_469851.1 16799583 1128960 528732..530003 1 NC_003212.1 similar to PTS system, Galactitol-specific IIC component; hypothetical protein 530003 1128960 lin0508 Listeria innocua Clip11262 hypothetical protein NP_469851.1 528732 D 272626 CDS NP_469852.1 16799584 1128961 530143..531078 1 NC_003212.1 similar to phosphoribosyl pyrophosphate synthetase; hypothetical protein 531078 1128961 lin0509 Listeria innocua Clip11262 hypothetical protein NP_469852.1 530143 D 272626 CDS NP_469853.1 16799585 1128962 531543..532130 1 NC_003212.1 lin0510; hypothetical protein 532130 1128962 lin0510 Listeria innocua Clip11262 hypothetical protein NP_469853.1 531543 D 272626 CDS NP_469854.1 16799586 1128963 532209..532889 1 NC_003212.1 hypothetical protein 532889 1128963 lin0511 Listeria innocua Clip11262 hypothetical protein NP_469854.1 532209 D 272626 CDS NP_469855.1 16799587 1128964 complement(532914..533273) 1 NC_003212.1 lin0512; hypothetical protein 533273 1128964 lin0512 Listeria innocua Clip11262 hypothetical protein NP_469855.1 532914 R 272626 CDS NP_469856.1 16799588 1128965 complement(533279..533737) 1 NC_003212.1 weakly similar to transcription regulator; hypothetical protein 533737 1128965 lin0513 Listeria innocua Clip11262 hypothetical protein NP_469856.1 533279 R 272626 CDS NP_469857.1 16799589 1128966 534129..535964 1 NC_003212.1 similar to internalin protein, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 535964 1128966 lin0514 Listeria innocua Clip11262 hypothetical protein NP_469857.1 534129 D 272626 CDS NP_469858.1 16799590 1128967 536040..536471 1 NC_003212.1 hypothetical protein 536471 1128967 lin0515 Listeria innocua Clip11262 hypothetical protein NP_469858.1 536040 D 272626 CDS NP_469859.1 16799591 1128968 complement(536521..537948) 1 NC_003212.1 similar to Bacillus anthracis encapsulation protein CapA; hypothetical protein 537948 1128968 lin0516 Listeria innocua Clip11262 hypothetical protein NP_469859.1 536521 R 272626 CDS NP_469860.1 16799592 1128969 complement(538038..538850) 1 NC_003212.1 similar to phosphoglycerate mutase; hypothetical protein 538850 1128969 lin0517 Listeria innocua Clip11262 hypothetical protein NP_469860.1 538038 R 272626 CDS NP_469861.1 16799593 1128970 complement(539272..539640) 1 NC_003212.1 hypothetical protein 539640 1128970 lin0518 Listeria innocua Clip11262 hypothetical protein NP_469861.1 539272 R 272626 CDS NP_469862.1 16799594 1128971 539786..541201 1 NC_003212.1 similar to multidrug resistance protein; hypothetical protein 541201 1128971 lin0519 Listeria innocua Clip11262 hypothetical protein NP_469862.1 539786 D 272626 CDS NP_469863.1 16799595 1128972 541333..542337 1 NC_003212.1 similar to transcription regulator; hypothetical protein 542337 1128972 lin0520 Listeria innocua Clip11262 hypothetical protein NP_469863.1 541333 D 272626 CDS NP_469864.1 16799596 1128973 542615..545602 1 NC_003212.1 similar to HsdR type IC restriction subunit; hypothetical protein 545602 1128973 lin0521 Listeria innocua Clip11262 hypothetical protein NP_469864.1 542615 D 272626 CDS NP_469865.1 16799597 1128974 545650..547239 1 NC_003212.1 similar to HsdM type IC modification subunit; hypothetical protein 547239 1128974 lin0522 Listeria innocua Clip11262 hypothetical protein NP_469865.1 545650 D 272626 CDS NP_469866.1 16799598 1128976 547236..548429 1 NC_003212.1 similar to specificity determinant HsdS; hypothetical protein 548429 1128976 lin0523 Listeria innocua Clip11262 hypothetical protein NP_469866.1 547236 D 272626 CDS NP_469867.1 16799599 1128977 548512..549441 1 NC_003212.1 similar to bacteriophage integrase; hypothetical protein 549441 1128977 lin0524 Listeria innocua Clip11262 hypothetical protein NP_469867.1 548512 D 272626 CDS NP_469868.1 16799600 1128978 complement(549487..550692) 1 NC_003212.1 similar to specificity determinant HsdS; hypothetical protein 550692 1128978 lin0525 Listeria innocua Clip11262 hypothetical protein NP_469868.1 549487 R 272626 CDS NP_469869.1 16799601 1128981 complement(550752..552068) 1 NC_003212.1 similar to 6-phospho-beta-glucosidase; hypothetical protein 552068 1128981 lin0526 Listeria innocua Clip11262 hypothetical protein NP_469869.1 550752 R 272626 CDS NP_469870.1 16799602 1128982 552271..553023 1 NC_003212.1 similar to transcription regulator; hypothetical protein 553023 1128982 lin0527 Listeria innocua Clip11262 hypothetical protein NP_469870.1 552271 D 272626 CDS NP_469871.1 16799603 1128983 553130..553573 1 NC_003212.1 similar to Bacillus subtilis YybC protein; hypothetical protein 553573 1128983 lin0528 Listeria innocua Clip11262 hypothetical protein NP_469871.1 553130 D 272626 CDS NP_469872.1 16799604 1128984 complement(553620..555281) 1 NC_003212.1 similar to putative sulfate transporter; hypothetical protein 555281 1128984 lin0529 Listeria innocua Clip11262 hypothetical protein NP_469872.1 553620 R 272626 CDS NP_469873.1 16799605 1128985 complement(555433..556173) 1 NC_003212.1 similar to transcription regulator (TipA from Streptomyces coelicolor); hypothetical protein 556173 1128985 lin0530 Listeria innocua Clip11262 hypothetical protein NP_469873.1 555433 R 272626 CDS NP_469874.1 16799606 1128986 556411..557886 1 NC_003212.1 transmembrane protein 557886 1128986 lin0531 Listeria innocua Clip11262 transmembrane protein NP_469874.1 556411 D 272626 CDS NP_469875.1 16799607 1128988 557879..559378 1 NC_003212.1 hypothetical secreted protein; hypothetical protein 559378 1128988 lin0532 Listeria innocua Clip11262 hypothetical protein NP_469875.1 557879 D 272626 CDS NP_469876.1 16799608 1128989 559389..560639 1 NC_003212.1 conserved hypothetical protein similar to putative glucosaminyltransferase; hypothetical protein 560639 1128989 lin0533 Listeria innocua Clip11262 hypothetical protein NP_469876.1 559389 D 272626 CDS NP_469877.1 16799609 1128990 560655..562706 1 NC_003212.1 lin0534; hypothetical protein 562706 1128990 lin0534 Listeria innocua Clip11262 hypothetical protein NP_469877.1 560655 D 272626 CDS NP_469878.1 16799610 1128991 562720..563574 1 NC_003212.1 lin0535; hypothetical protein 563574 1128991 lin0535 Listeria innocua Clip11262 hypothetical protein NP_469878.1 562720 D 272626 CDS NP_469879.1 16799611 1128992 563634..564464 1 NC_003212.1 lin0536; hypothetical protein 564464 1128992 lin0536 Listeria innocua Clip11262 hypothetical protein NP_469879.1 563634 D 272626 CDS NP_469880.1 16799612 1128993 564542..564811 1 NC_003212.1 ACT domain-containing protein; hypothetical protein 564811 1128993 lin0537 Listeria innocua Clip11262 hypothetical protein NP_469880.1 564542 D 272626 CDS NP_469881.1 16799613 1128994 564830..566185 1 NC_003212.1 hypothetical protein 566185 1128994 lin0538 Listeria innocua Clip11262 hypothetical protein NP_469881.1 564830 D 272626 CDS NP_469882.1 16799614 1128995 complement(566225..567193) 1 NC_003212.1 similar to transcription regulator (LacI family); hypothetical protein 567193 1128995 lin0539 Listeria innocua Clip11262 hypothetical protein NP_469882.1 566225 R 272626 CDS NP_469883.1 16799615 1128996 567365..568687 1 NC_003212.1 similar to 6-phospho-beta-glucosidase; hypothetical protein 568687 1128996 lin0540 Listeria innocua Clip11262 hypothetical protein NP_469883.1 567365 D 272626 CDS NP_469884.1 16799616 1128997 568791..570035 1 NC_003212.1 similar to N-carbamyl-L-amino acid amidohydrolase; allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 570035 1128997 lin0541 Listeria innocua Clip11262 allantoate amidohydrolase NP_469884.1 568791 D 272626 CDS NP_469885.1 16799617 1128999 570028..571209 1 NC_003212.1 similar to N-acyl-L-amino acid amidohydrolase; hypothetical protein 571209 1128999 lin0542 Listeria innocua Clip11262 hypothetical protein NP_469885.1 570028 D 272626 CDS NP_469886.1 16799618 1129000 complement(571262..572278) 1 NC_003212.1 similar to tagatose-1,6-diphosphate aldolase; catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 572278 1129000 lin0543 Listeria innocua Clip11262 tagatose 1,6-diphosphate aldolase NP_469886.1 571262 R 272626 CDS NP_469887.1 16799619 1129001 572516..573712 1 NC_003212.1 similar to penicillin-binding protein; hypothetical protein 573712 1129001 lin0544 Listeria innocua Clip11262 hypothetical protein NP_469887.1 572516 D 272626 CDS NP_469888.1 16799620 1129002 complement(573749..574669) 1 NC_003212.1 similar to ABC transporter (binding protein); hypothetical protein 574669 1129002 lin0545 Listeria innocua Clip11262 hypothetical protein NP_469888.1 573749 R 272626 CDS NP_469889.1 16799621 1129003 complement(574781..575131) 1 NC_003212.1 similar to PTS system, glucitol/sorbitol-specific enzyme IIA component; hypothetical protein 575131 1129003 lin0546 Listeria innocua Clip11262 hypothetical protein NP_469889.1 574781 R 272626 CDS NP_469890.1 16799622 1129004 complement(575151..576137) 1 NC_003212.1 similar to PTS system, glucitol/sorbitol-specific enzyme IIBC component; hypothetical protein 576137 1129004 lin0547 Listeria innocua Clip11262 hypothetical protein NP_469890.1 575151 R 272626 CDS NP_469891.1 16799623 1129005 complement(576159..576680) 1 NC_003212.1 similar to PTS system, glucitol/sorbitol-specific enzyme II CII component; hypothetical protein 576680 1129005 lin0548 Listeria innocua Clip11262 hypothetical protein NP_469891.1 576159 R 272626 CDS NP_469892.1 16799624 1129006 complement(576705..577085) 1 NC_003212.1 lin0549; hypothetical protein 577085 1129006 lin0549 Listeria innocua Clip11262 hypothetical protein NP_469892.1 576705 R 272626 CDS NP_469893.1 16799625 1129007 complement(577140..578390) 1 NC_003212.1 similar to putative NAD(P)-dependent oxidoreductase; hypothetical protein 578390 1129007 lin0550 Listeria innocua Clip11262 hypothetical protein NP_469893.1 577140 R 272626 CDS NP_469894.1 16799626 1129008 complement(578649..579596) 1 NC_003212.1 similar to Bacillus subtilis DeoR transcriptional regulator; hypothetical protein 579596 1129008 lin0551 Listeria innocua Clip11262 hypothetical protein NP_469894.1 578649 R 272626 CDS NP_469895.1 16799627 1129009 579962..580627 1 NC_003212.1 lin0552; hypothetical protein 580627 1129009 lin0552 Listeria innocua Clip11262 hypothetical protein NP_469895.1 579962 D 272626 CDS NP_469896.1 16799628 1129010 580648..582753 1 NC_003212.1 similar to internalin protein; hypothetical protein 582753 1129010 lin0553 Listeria innocua Clip11262 hypothetical protein NP_469896.1 580648 D 272626 CDS NP_469897.1 16799629 1129011 582773..583066 1 NC_003212.1 cell surface protein 583066 1129011 lin0554 Listeria innocua Clip11262 cell surface protein NP_469897.1 582773 D 272626 CDS NP_469898.1 16799630 1129012 583113..583955 1 NC_003212.1 lin0555; hypothetical protein 583955 1129012 lin0555 Listeria innocua Clip11262 hypothetical protein NP_469898.1 583113 D 272626 CDS NP_469899.1 16799631 1129013 584035..585066 1 NC_003212.1 hypothetical protein 585066 1129013 lin0556 Listeria innocua Clip11262 hypothetical protein NP_469899.1 584035 D 272626 CDS NP_469900.1 16799632 1129014 585412..586059 1 NC_003212.1 lin0557; hypothetical protein 586059 1129014 lin0557 Listeria innocua Clip11262 hypothetical protein NP_469900.1 585412 D 272626 CDS NP_469901.1 16799633 1129015 586088..588082 1 NC_003212.1 similar to internalin protein; hypothetical protein 588082 1129015 lin0558 Listeria innocua Clip11262 hypothetical protein NP_469901.1 586088 D 272626 CDS NP_469902.1 16799634 1129016 588111..588401 1 NC_003212.1 cell surface protein 588401 1129016 lin0559 Listeria innocua Clip11262 cell surface protein NP_469902.1 588111 D 272626 CDS NP_469903.1 16799635 1129017 588453..589295 1 NC_003212.1 lin0560; hypothetical protein 589295 1129017 lin0560 Listeria innocua Clip11262 hypothetical protein NP_469903.1 588453 D 272626 CDS NP_469904.1 16799636 1129018 589374..590405 1 NC_003212.1 hypothetical protein 590405 1129018 lin0561 Listeria innocua Clip11262 hypothetical protein NP_469904.1 589374 D 272626 CDS NP_469905.1 16799637 1129019 complement(590463..591098) 1 NC_003212.1 lin0562; hypothetical protein 591098 1129019 lin0562 Listeria innocua Clip11262 hypothetical protein NP_469905.1 590463 R 272626 CDS NP_469906.1 16799638 1129020 591307..592488 1 NC_003212.1 similar to NADH-dependent butanol dehydrogenase; hypothetical protein 592488 1129020 lin0563 Listeria innocua Clip11262 hypothetical protein NP_469906.1 591307 D 272626 CDS NP_469907.1 16799639 1129021 592524..594002 1 NC_003212.1 similar to di-tripeptide transporter; hypothetical protein 594002 1129021 lin0564 Listeria innocua Clip11262 hypothetical protein NP_469907.1 592524 D 272626 CDS NP_469908.1 16799640 1129022 594132..594839 1 NC_003212.1 similar to phosphoglycerate mutase; hypothetical protein 594839 1129022 lin0565 Listeria innocua Clip11262 hypothetical protein NP_469908.1 594132 D 272626 CDS NP_469909.1 16799641 1129024 594840..595535 1 NC_003212.1 similar to phosphoglycerate mutase; hypothetical protein 595535 1129024 lin0566 Listeria innocua Clip11262 hypothetical protein NP_469909.1 594840 D 272626 CDS NP_469910.1 16799642 1129025 complement(595578..596618) 1 NC_003212.1 hypothetical protein 596618 1129025 lin0567 Listeria innocua Clip11262 hypothetical protein NP_469910.1 595578 R 272626 CDS NP_469911.1 16799643 1129026 597013..597918 1 NC_003212.1 hypothetical protein 597918 1129026 lin0568 Listeria innocua Clip11262 hypothetical protein NP_469911.1 597013 D 272626 CDS NP_469912.1 16799644 1129027 complement(597962..599338) 1 NC_003212.1 similar to NADP-specific glutamate dehydrogenase; converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 599338 1129027 lin0569 Listeria innocua Clip11262 glutamate dehydrogenase NP_469912.1 597962 R 272626 CDS NP_469913.1 16799645 1129028 complement(599873..600184) 1 NC_003212.1 similar to phosphorybosil-AMP-cyclohydrolase (HisI2 protein); catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 600184 hisE 1129028 hisE Listeria innocua Clip11262 phosphoribosyl-ATP pyrophosphatase NP_469913.1 599873 R 272626 CDS NP_469914.1 16799646 1129029 complement(600185..600502) 1 NC_003212.1 similar to phosphoribosyl-AMP cyclohydrolase (HisI1 protein); PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 600502 hisI 1129029 hisI Listeria innocua Clip11262 phosphoribosyl-AMP cyclohydrolase NP_469914.1 600185 R 272626 CDS NP_469915.1 16799647 1129031 complement(600499..601254) 1 NC_003212.1 highly similar to cyclase HisF; catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 601254 1129031 lin0572 Listeria innocua Clip11262 imidazole glycerol phosphate synthase subunit HisF NP_469915.1 600499 R 272626 CDS NP_469916.1 16799648 1129033 complement(601244..601966) 1 NC_003212.1 highly similar to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 601966 1129033 lin0573 Listeria innocua Clip11262 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase NP_469916.1 601244 R 272626 CDS NP_469917.1 16799649 1129035 complement(601945..602571) 1 NC_003212.1 similar to amidotransferases; with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 602571 hisH 1129035 hisH Listeria innocua Clip11262 imidazole glycerol phosphate synthase subunit HisH NP_469917.1 601945 R 272626 CDS NP_469918.1 16799650 1129036 complement(602572..603156) 1 NC_003212.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 603156 hisB 1129036 hisB Listeria innocua Clip11262 imidazoleglycerol-phosphate dehydratase NP_469918.1 602572 R 272626 CDS NP_469919.1 16799651 1129037 complement(603157..604440) 1 NC_003212.1 highly similar to histidinol dehydrogenases; catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 604440 hisD 1129037 hisD Listeria innocua Clip11262 histidinol dehydrogenase NP_469919.1 603157 R 272626 CDS NP_469920.1 16799652 1129039 complement(604437..605078) 1 NC_003212.1 similar to ATP phosphoribosyltransferase; short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 605078 hisG 1129039 hisG Listeria innocua Clip11262 ATP phosphoribosyltransferase catalytic subunit NP_469920.1 604437 R 272626 CDS NP_469921.1 16799653 1129041 complement(605078..606256) 1 NC_003212.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 606256 hisZ 1129041 hisZ Listeria innocua Clip11262 ATP phosphoribosyltransferase regulatory subunit NP_469921.1 605078 R 272626 CDS NP_469922.1 16799654 1129042 606408..607235 1 NC_003212.1 similar histidinol phosphate phosphatase; catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 607235 1129042 lin0579 Listeria innocua Clip11262 histidinol-phosphatase NP_469922.1 606408 D 272626 CDS NP_469923.1 16799655 1129043 complement(607220..607516) 1 NC_003212.1 similar to methyltransferase; hypothetical protein 607516 1129043 lin0580 Listeria innocua Clip11262 hypothetical protein NP_469923.1 607220 R 272626 CDS NP_469924.1 16799656 1129044 607593..608624 1 NC_003212.1 lin0581; hypothetical protein 608624 1129044 lin0581 Listeria innocua Clip11262 hypothetical protein NP_469924.1 607593 D 272626 CDS NP_469925.1 16799657 1129045 complement(608666..609961) 1 NC_003212.1 hypothetical protein 609961 1129045 lin0582 Listeria innocua Clip11262 hypothetical protein NP_469925.1 608666 R 272626 CDS NP_469926.1 16799658 1129046 610277..611671 1 NC_003212.1 similar to beta-glucosidase; hypothetical protein 611671 1129046 lin0583 Listeria innocua Clip11262 hypothetical protein NP_469926.1 610277 D 272626 CDS NP_469927.1 16799659 1129047 611715..612443 1 NC_003212.1 similar to transcription regulator GntR family; hypothetical protein 612443 1129047 lin0584 Listeria innocua Clip11262 hypothetical protein NP_469927.1 611715 D 272626 CDS NP_469928.1 16799660 1129048 612868..614331 1 NC_003212.1 hypothetical cell wall associated protein; hypothetical protein 614331 1129048 lin0585 Listeria innocua Clip11262 hypothetical protein NP_469928.1 612868 D 272626 CDS NP_469929.1 16799661 1129049 complement(614385..614843) 1 NC_003212.1 lin0586; hypothetical protein 614843 1129049 lin0586 Listeria innocua Clip11262 hypothetical protein NP_469929.1 614385 R 272626 CDS NP_469930.1 16799662 1129050 complement(614857..615609) 1 NC_003212.1 hypothetical protein 615609 1129050 lin0587 Listeria innocua Clip11262 hypothetical protein NP_469930.1 614857 R 272626 CDS NP_469931.1 16799663 1129051 615774..615983 1 NC_003212.1 hypothetical protein 615983 1129051 lin0588 Listeria innocua Clip11262 hypothetical protein NP_469931.1 615774 D 272626 CDS NP_469932.1 16799664 1129052 616006..616665 1 NC_003212.1 weakly similar to carboxylesterase; hypothetical protein 616665 1129052 lin0589 Listeria innocua Clip11262 hypothetical protein NP_469932.1 616006 D 272626 CDS NP_469933.1 16799665 1129053 complement(616702..617889) 1 NC_003212.1 hypothetical protein 617889 1129053 lin0590 Listeria innocua Clip11262 hypothetical protein NP_469933.1 616702 R 272626 CDS NP_469934.1 16799666 1129054 complement(617978..619375) 1 NC_003212.1 iap; p60; autolytic enzyme; can cleave bacterial peptidoglycan; secreted by SecA2 system; invasion associated secreted endopeptidase 619375 iap 1129054 iap Listeria innocua Clip11262 invasion associated secreted endopeptidase NP_469934.1 617978 R 272626 CDS NP_469935.1 16799667 1129055 619800..622130 1 NC_003212.1 similar to preprotein translocase SecA subunit; functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 622130 1129055 lin0592 Listeria innocua Clip11262 preprotein translocase subunit SecA NP_469935.1 619800 D 272626 CDS NP_469936.1 16799668 1129056 622246..623415 1 NC_003212.1 hypothetical protein 623415 1129056 lin0593 Listeria innocua Clip11262 hypothetical protein NP_469936.1 622246 D 272626 CDS NP_469937.1 16799669 1129057 623676..624389 1 NC_003212.1 putative secreted protein 624389 1129057 lin0594 Listeria innocua Clip11262 putative secreted protein NP_469937.1 623676 D 272626 CDS NP_469938.1 16799670 1129058 624459..625484 1 NC_003212.1 lin0595; hypothetical protein 625484 1129058 lin0595 Listeria innocua Clip11262 hypothetical protein NP_469938.1 624459 D 272626 CDS NP_469939.1 16799671 1129059 625502..627967 1 NC_003212.1 putative secreted protein 627967 1129059 lin0596 Listeria innocua Clip11262 putative secreted protein NP_469939.1 625502 D 272626 CDS NP_469940.1 16799672 1129060 628080..629483 1 NC_003212.1 similar to DNA photolyase; hypothetical protein 629483 1129060 lin0597 Listeria innocua Clip11262 hypothetical protein NP_469940.1 628080 D 272626 CDS NP_469941.1 16799673 1129061 629621..630037 1 NC_003212.1 lin0598; hypothetical protein 630037 1129061 lin0598 Listeria innocua Clip11262 hypothetical protein NP_469941.1 629621 D 272626 CDS NP_469942.1 16799674 1129063 630034..631803 1 NC_003212.1 similar to a fusion of two types of conserved hypothetical proteinconserved hypothetical; hypothetical protein 631803 1129063 lin0599 Listeria innocua Clip11262 hypothetical protein NP_469942.1 630034 D 272626 CDS NP_469943.1 16799675 1129065 631800..632573 1 NC_003212.1 similar to unknown membrane proteins; hypothetical protein 632573 1129065 lin0600 Listeria innocua Clip11262 hypothetical protein NP_469943.1 631800 D 272626 CDS NP_469944.1 16799676 1129066 632699..633241 1 NC_003212.1 lin0601; hypothetical protein 633241 1129066 lin0601 Listeria innocua Clip11262 hypothetical protein NP_469944.1 632699 D 272626 CDS NP_469945.1 16799677 1129067 633465..634265 1 NC_003212.1 similar to transport proteins (formate?); hypothetical protein 634265 1129067 lin0602 Listeria innocua Clip11262 hypothetical protein NP_469945.1 633465 D 272626 CDS NP_469946.1 16799678 1129068 complement(634305..635411) 1 NC_003212.1 similar to homoserine O-acetyltransferase; Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 635411 metX 1129068 metX Listeria innocua Clip11262 homoserine O-acetyltransferase NP_469946.1 634305 R 272626 CDS NP_469947.1 16799679 1129069 complement(635428..636705) 1 NC_003212.1 similar to O-acetylhomoserine sulfhydrylase; hypothetical protein 636705 1129069 lin0604 Listeria innocua Clip11262 hypothetical protein NP_469947.1 635428 R 272626 CDS NP_469948.1 16799680 1129070 637153..637680 1 NC_003212.1 hypothetical protein 637680 1129070 lin0605 Listeria innocua Clip11262 hypothetical protein NP_469948.1 637153 D 272626 CDS NP_469949.1 16799681 1129071 complement(637733..638434) 1 NC_003212.1 similar to transcription regulator CRP/FNR family; hypothetical protein 638434 1129071 lin0606 Listeria innocua Clip11262 hypothetical protein NP_469949.1 637733 R 272626 CDS NP_469950.1 16799682 1129072 complement(638510..639058) 1 NC_003212.1 similar to proteins involved in biotin metabolism (BioY); hypothetical protein 639058 1129072 lin0607 Listeria innocua Clip11262 hypothetical protein NP_469950.1 638510 R 272626 CDS NP_469951.1 16799683 1129073 639252..639584 1 NC_003212.1 hypothetical protein 639584 1129073 lin0608 Listeria innocua Clip11262 hypothetical protein NP_469951.1 639252 D 272626 CDS NP_469952.1 16799684 1129075 639577..640167 1 NC_003212.1 lin0609; hypothetical protein 640167 1129075 lin0609 Listeria innocua Clip11262 hypothetical protein NP_469952.1 639577 D 272626 CDS NP_469953.1 16799685 1129077 640160..641260 1 NC_003212.1 similar to cell surface protein; hypothetical protein 641260 1129077 lin0610 Listeria innocua Clip11262 hypothetical protein NP_469953.1 640160 D 272626 CDS NP_469954.1 16799686 1129078 641366..641866 1 NC_003212.1 weakly similar to transcription regulator; hypothetical protein 641866 1129078 lin0611 Listeria innocua Clip11262 hypothetical protein NP_469954.1 641366 D 272626 CDS NP_469955.1 16799687 1129079 complement(641913..642299) 1 NC_003212.1 lin0612; hypothetical protein 642299 1129079 lin0612 Listeria innocua Clip11262 hypothetical protein NP_469955.1 641913 R 272626 CDS NP_469956.1 16799688 1129080 complement(642352..642696) 1 NC_003212.1 similar to Bacillus subtilis YvlA protein; hypothetical protein 642696 1129080 lin0613 Listeria innocua Clip11262 hypothetical protein NP_469956.1 642352 R 272626 CDS NP_469957.1 16799689 1129081 complement(642847..644187) 1 NC_003212.1 hypothetical protein 644187 1129081 lin0614 Listeria innocua Clip11262 hypothetical protein NP_469957.1 642847 R 272626 CDS NP_469958.1 16799690 1129082 644354..644815 1 NC_003212.1 similar to transcription regulator MarR family; hypothetical protein 644815 1129082 lin0615 Listeria innocua Clip11262 hypothetical protein NP_469958.1 644354 D 272626 CDS NP_469959.1 16799691 1129083 644835..646547 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 646547 1129083 lin0616 Listeria innocua Clip11262 hypothetical protein NP_469959.1 644835 D 272626 CDS NP_469960.1 16799692 1129085 646544..648361 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 648361 1129085 lin0617 Listeria innocua Clip11262 hypothetical protein NP_469960.1 646544 D 272626 CDS NP_469961.1 16799693 1129086 648475..648774 1 NC_003212.1 similar to Escherichia coli phage shock protein E; hypothetical protein 648774 1129086 lin0618 Listeria innocua Clip11262 hypothetical protein NP_469961.1 648475 D 272626 CDS NP_469962.1 16799694 1129087 complement(648814..650577) 1 NC_003212.1 similar to internalin proteins, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 650577 1129087 lin0619 Listeria innocua Clip11262 hypothetical protein NP_469962.1 648814 R 272626 CDS NP_469963.1 16799695 1129088 complement(650742..651368) 1 NC_003212.1 similar to acyl-carrier protein phosphodiesterase and NAD(P)H dehydrogenase; FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 651368 acpD 1129088 acpD Listeria innocua Clip11262 azoreductase NP_469963.1 650742 R 272626 CDS NP_469964.1 16799696 1129089 651549..651992 1 NC_003212.1 similar to transcription regulator MarR family; hypothetical protein 651992 1129089 lin0621 Listeria innocua Clip11262 hypothetical protein NP_469964.1 651549 D 272626 CDS NP_469965.1 16799697 1129091 651989..652930 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 652930 1129091 lin0622 Listeria innocua Clip11262 hypothetical protein NP_469965.1 651989 D 272626 CDS NP_469966.1 16799698 1129092 653025..653558 1 NC_003212.1 hypothetical protein 653558 1129092 lin0623 Listeria innocua Clip11262 hypothetical protein NP_469966.1 653025 D 272626 CDS NP_469967.1 16799699 1129093 complement(653555..653797) 1 NC_003212.1 lin0624; hypothetical protein 653797 1129093 lin0624 Listeria innocua Clip11262 hypothetical protein NP_469967.1 653555 R 272626 CDS NP_469968.1 16799700 1129094 653905..655656 1 NC_003212.1 glycerophosphoryl diester phosphodiesterase 655656 1129094 lin0625 Listeria innocua Clip11262 glycerophosphoryl diester phosphodiesterase NP_469968.1 653905 D 272626 CDS NP_469969.1 16799701 1129096 complement(655698..656168) 1 NC_003212.1 lin0626; hypothetical protein 656168 1129096 lin0626 Listeria innocua Clip11262 hypothetical protein NP_469969.1 655698 R 272626 CDS NP_469970.1 16799702 1129097 complement(656278..657429) 1 NC_003212.1 similar to protein kinase; hypothetical protein 657429 1129097 lin0627 Listeria innocua Clip11262 hypothetical protein NP_469970.1 656278 R 272626 CDS NP_469971.1 16799703 1129098 657535..657990 1 NC_003212.1 lin0628; hypothetical protein 657990 1129098 lin0628 Listeria innocua Clip11262 hypothetical protein NP_469971.1 657535 D 272626 CDS NP_469972.1 16799704 1129099 658046..658438 1 NC_003212.1 lin0629; hypothetical protein 658438 1129099 lin0629 Listeria innocua Clip11262 hypothetical protein NP_469972.1 658046 D 272626 CDS NP_469973.1 16799705 1129100 658534..659274 1 NC_003212.1 hypothetical protein 659274 1129100 lin0630 Listeria innocua Clip11262 hypothetical protein NP_469973.1 658534 D 272626 CDS NP_469974.1 16799706 1129101 659358..659636 1 NC_003212.1 hypothetical protein 659636 1129101 lin0631 Listeria innocua Clip11262 hypothetical protein NP_469974.1 659358 D 272626 CDS NP_469975.1 16799707 1129102 659652..659918 1 NC_003212.1 lin0632; hypothetical protein 659918 1129102 lin0632 Listeria innocua Clip11262 hypothetical protein NP_469975.1 659652 D 272626 CDS NP_469976.1 16799708 1129103 complement(659950..660381) 1 NC_003212.1 hypothetical protein 660381 1129103 lin0633 Listeria innocua Clip11262 hypothetical protein NP_469976.1 659950 R 272626 CDS NP_469977.1 16799709 1129104 complement(660418..661119) 1 NC_003212.1 lin0634; hypothetical protein 661119 1129104 lin0634 Listeria innocua Clip11262 hypothetical protein NP_469977.1 660418 R 272626 CDS NP_469978.1 16799710 1129105 complement(661202..662881) 1 NC_003212.1 hypothetical protein 662881 1129105 lin0635 Listeria innocua Clip11262 hypothetical protein NP_469978.1 661202 R 272626 CDS NP_469979.1 16799711 1129106 663184..667920 1 NC_003212.1 pepdidoglycan bound protein 667920 1129106 lin0636 Listeria innocua Clip11262 pepdidoglycan bound protein NP_469979.1 663184 D 272626 CDS NP_469980.1 16799712 1129107 668016..668291 1 NC_003212.1 lin0637; hypothetical protein 668291 1129107 lin0637 Listeria innocua Clip11262 hypothetical protein NP_469980.1 668016 D 272626 CDS NP_469981.1 16799713 1129108 668334..668861 1 NC_003212.1 lin0638; hypothetical protein 668861 1129108 lin0638 Listeria innocua Clip11262 hypothetical protein NP_469981.1 668334 D 272626 CDS NP_469982.1 16799714 1129109 668948..669652 1 NC_003212.1 lin0639; hypothetical protein 669652 1129109 lin0639 Listeria innocua Clip11262 hypothetical protein NP_469982.1 668948 D 272626 CDS NP_469983.1 16799715 1129110 669764..670180 1 NC_003212.1 hypothetical protein 670180 1129110 lin0640 Listeria innocua Clip11262 hypothetical protein NP_469983.1 669764 D 272626 CDS NP_469984.1 16799716 1129111 670194..670793 1 NC_003212.1 weakly similar to methyltransferase; hypothetical protein 670793 1129111 lin0641 Listeria innocua Clip11262 hypothetical protein NP_469984.1 670194 D 272626 CDS NP_469985.1 16799717 1129112 671031..671564 1 NC_003212.1 similar to a transcription regulator (surface protein PAg negative regulator par); hypothetical protein 671564 1129112 lin0642 Listeria innocua Clip11262 hypothetical protein NP_469985.1 671031 D 272626 CDS NP_469986.1 16799718 1129113 671629..672546 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 672546 1129113 lin0643 Listeria innocua Clip11262 hypothetical protein NP_469986.1 671629 D 272626 CDS NP_469987.1 16799719 1129114 672812..674689 1 NC_003212.1 similar to heavy metal-transporting ATPase; hypothetical protein 674689 1129114 lin0644 Listeria innocua Clip11262 hypothetical protein NP_469987.1 672812 D 272626 CDS NP_469988.1 16799720 1129115 674788..675516 1 NC_003212.1 lin0645; hypothetical protein 675516 1129115 lin0645 Listeria innocua Clip11262 hypothetical protein NP_469988.1 674788 D 272626 CDS NP_469989.1 16799721 1129116 675660..676310 1 NC_003212.1 similar to putative transaldolase; hypothetical protein 676310 1129116 lin0646 Listeria innocua Clip11262 hypothetical protein NP_469989.1 675660 D 272626 CDS NP_469990.1 16799722 1129117 complement(676350..678170) 1 NC_003212.1 hypothetical protein 678170 1129117 lin0647 Listeria innocua Clip11262 hypothetical protein NP_469990.1 676350 R 272626 CDS NP_469991.1 16799723 1129118 678404..679795 1 NC_003212.1 similar to amino acid transporter; hypothetical protein 679795 1129118 lin0648 Listeria innocua Clip11262 hypothetical protein NP_469991.1 678404 D 272626 CDS NP_469992.1 16799724 1129120 679885..680724 1 NC_003212.1 hypothetical protein 680724 1129120 lin0649 Listeria innocua Clip11262 hypothetical protein NP_469992.1 679885 D 272626 CDS NP_469993.1 16799725 1129121 complement(680807..681091) 1 NC_003212.1 lin0650; hypothetical protein 681091 1129121 lin0650 Listeria innocua Clip11262 hypothetical protein NP_469993.1 680807 R 272626 CDS NP_469994.1 16799726 1129122 681188..682138 1 NC_003212.1 similar to membrane proteins; hypothetical protein 682138 1129122 lin0651 Listeria innocua Clip11262 hypothetical protein NP_469994.1 681188 D 272626 CDS NP_469995.1 16799727 1129123 682162..682803 1 NC_003212.1 similar to transcription regulators; hypothetical protein 682803 1129123 lin0652 Listeria innocua Clip11262 hypothetical protein NP_469995.1 682162 D 272626 CDS NP_469996.1 16799728 1129124 682845..685535 1 NC_003212.1 hypothetical protein 685535 1129124 lin0653 Listeria innocua Clip11262 hypothetical protein NP_469996.1 682845 D 272626 CDS NP_469997.1 16799729 1129125 685582..686229 1 NC_003212.1 similar to transcription regulator; hypothetical protein 686229 1129125 lin0654 Listeria innocua Clip11262 hypothetical protein NP_469997.1 685582 D 272626 CDS NP_469998.1 16799730 1129126 complement(686238..686774) 1 NC_003212.1 hypothetical protein 686774 1129126 lin0655 Listeria innocua Clip11262 hypothetical protein NP_469998.1 686238 R 272626 CDS NP_469999.1 16799731 1129127 complement(686761..687798) 1 NC_003212.1 lin0656; hypothetical protein 687798 1129127 lin0656 Listeria innocua Clip11262 hypothetical protein NP_469999.1 686761 R 272626 CDS NP_470000.1 16799732 1129128 687989..688198 1 NC_003212.1 lin0657; hypothetical protein 688198 1129128 lin0657 Listeria innocua Clip11262 hypothetical protein NP_470000.1 687989 D 272626 CDS NP_470001.1 16799733 1129129 688272..688979 1 NC_003212.1 similar to phosphoprotein phosphatases; hypothetical protein 688979 1129129 lin0658 Listeria innocua Clip11262 hypothetical protein NP_470001.1 688272 D 272626 CDS NP_470002.1 16799734 1129130 complement(689025..689588) 1 NC_003212.1 hypothetical protein 689588 1129130 lin0659 Listeria innocua Clip11262 hypothetical protein NP_470002.1 689025 R 272626 CDS NP_470003.1 16799735 1129132 689709..690125 1 NC_003212.1 lin0660; hypothetical protein 690125 1129132 lin0660 Listeria innocua Clip11262 hypothetical protein NP_470003.1 689709 D 272626 CDS NP_470004.1 16799736 1129133 690411..692201 1 NC_003212.1 internalin-like protein 692201 1129133 lin0661 Listeria innocua Clip11262 internalin-like protein NP_470004.1 690411 D 272626 CDS NP_470005.1 16799737 1129134 692346..692975 1 NC_003212.1 hypothetical protein 692975 1129134 lin0662 Listeria innocua Clip11262 hypothetical protein NP_470005.1 692346 D 272626 CDS NP_470006.1 16799738 1129135 complement(692972..693868) 1 NC_003212.1 similar to transcription regulator (Rgg type); hypothetical protein 693868 1129135 lin0663 Listeria innocua Clip11262 hypothetical protein NP_470006.1 692972 R 272626 CDS NP_470007.1 16799739 1129137 694103..694384 1 NC_003212.1 similar to transposases; hypothetical protein 694384 1129137 lin0664 Listeria innocua Clip11262 hypothetical protein NP_470007.1 694103 D 272626 CDS NP_470008.1 16799740 1129138 694660..697155 1 NC_003212.1 highly similar to ORFA of Listeria seeligeri, (LPXTG motif); hypothetical protein 697155 1129138 lin0665 Listeria innocua Clip11262 hypothetical protein NP_470008.1 694660 D 272626 CDS NP_470009.1 16799741 1129139 complement(697208..697516) 1 NC_003212.1 hypothetical protein 697516 1129139 lin0666 Listeria innocua Clip11262 hypothetical protein NP_470009.1 697208 R 272626 CDS NP_470010.1 16799742 1129140 complement(697579..698394) 1 NC_003212.1 highly similar to phosphomethylpyrimidine kinase thiD; hypothetical protein 698394 1129140 lin0667 Listeria innocua Clip11262 hypothetical protein NP_470010.1 697579 R 272626 CDS NP_470011.1 16799743 1129141 complement(698420..699286) 1 NC_003212.1 hypothetical protein 699286 1129141 lin0668 Listeria innocua Clip11262 hypothetical protein NP_470011.1 698420 R 272626 CDS NP_470012.1 16799744 1129142 699460..700023 1 NC_003212.1 similar to acetyl transferase; hypothetical protein 700023 1129142 lin0669 Listeria innocua Clip11262 hypothetical protein NP_470012.1 699460 D 272626 CDS NP_470013.1 16799745 1129144 700020..700283 1 NC_003212.1 lin0670; hypothetical protein 700283 1129144 lin0670 Listeria innocua Clip11262 hypothetical protein NP_470013.1 700020 D 272626 CDS NP_470014.1 16799746 1129145 700293..700670 1 NC_003212.1 hypothetical protein 700670 1129145 lin0671 Listeria innocua Clip11262 hypothetical protein NP_470014.1 700293 D 272626 CDS NP_470015.1 16799747 1129146 700784..701719 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 701719 1129146 lin0672 Listeria innocua Clip11262 hypothetical protein NP_470015.1 700784 D 272626 CDS NP_470016.1 16799748 1129148 701712..702482 1 NC_003212.1 similar to putative ABC transporter, permease protein; hypothetical protein 702482 1129148 lin0673 Listeria innocua Clip11262 hypothetical protein NP_470016.1 701712 D 272626 CDS NP_470017.1 16799749 1129149 702741..703625 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 703625 1129149 lin0674 Listeria innocua Clip11262 hypothetical protein NP_470017.1 702741 D 272626 CDS NP_470018.1 16799750 1129150 703643..703819 1 NC_003212.1 lin0675; hypothetical protein 703819 1129150 lin0675 Listeria innocua Clip11262 hypothetical protein NP_470018.1 703643 D 272626 CDS NP_470019.1 16799751 1129151 703943..704551 1 NC_003212.1 lin0676; hypothetical protein 704551 1129151 lin0676 Listeria innocua Clip11262 hypothetical protein NP_470019.1 703943 D 272626 CDS NP_470020.1 16799752 1129152 705344..706225 1 NC_003212.1 hypothetical protein 706225 1129152 lin0677 Listeria innocua Clip11262 hypothetical protein NP_470020.1 705344 D 272626 CDS NP_470021.1 16799753 1129153 706261..706689 1 NC_003212.1 lin0678; hypothetical protein 706689 1129153 lin0678 Listeria innocua Clip11262 hypothetical protein NP_470021.1 706261 D 272626 CDS NP_470022.1 16799754 1129154 707870..708280 1 NC_003212.1 hypothetical protein 708280 1129154 lin0679 Listeria innocua Clip11262 hypothetical protein NP_470022.1 707870 D 272626 CDS NP_470023.1 16799755 1129155 708424..708846 1 NC_003212.1 hypothetical protein 708846 1129155 lin0680 Listeria innocua Clip11262 hypothetical protein NP_470023.1 708424 D 272626 CDS NP_470024.1 16799756 1129156 complement(708887..709096) 1 NC_003212.1 lin0681; hypothetical protein 709096 1129156 lin0681 Listeria innocua Clip11262 hypothetical protein NP_470024.1 708887 R 272626 CDS NP_470025.1 16799757 1129157 complement(709117..710037) 1 NC_003212.1 lin0682; hypothetical protein 710037 1129157 lin0682 Listeria innocua Clip11262 hypothetical protein NP_470025.1 709117 R 272626 CDS NP_470026.1 16799758 1129158 710409..710723 1 NC_003212.1 lin0683; hypothetical protein 710723 1129158 lin0683 Listeria innocua Clip11262 hypothetical protein NP_470026.1 710409 D 272626 CDS NP_470027.1 16799759 1129160 710716..711483 1 NC_003212.1 similar to flagellar biosynthesic protein FliP; FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 711483 fliP 1129160 fliP Listeria innocua Clip11262 flagellar biosynthesis protein FliP NP_470027.1 710716 D 272626 CDS NP_470028.1 16799760 1129161 711496..711768 1 NC_003212.1 similar to flagellar biosynthesis protein FliQ; with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 711768 fliQ 1129161 fliQ Listeria innocua Clip11262 flagellar biosynthesis protein FliQ NP_470028.1 711496 D 272626 CDS NP_470029.1 16799761 1129163 711771..712532 1 NC_003212.1 similar to flagellar biosynthetic protein FliR; FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 712532 fliR 1129163 fliR Listeria innocua Clip11262 flagellar biosynthesis protein FliR NP_470029.1 711771 D 272626 CDS NP_470030.1 16799762 1129164 712548..713594 1 NC_003212.1 similar to flagellar biosynthetic protein flhB; membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 713594 flhB 1129164 flhB Listeria innocua Clip11262 flagellar biosynthesis protein FlhB NP_470030.1 712548 D 272626 CDS NP_470031.1 16799763 1129165 713641..715716 1 NC_003212.1 similar to flagella-associated protein flhA; membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 715716 flhA 1129165 flhA Listeria innocua Clip11262 flagellar biosynthesis protein FlhA NP_470031.1 713641 D 272626 CDS NP_470032.1 16799764 1129166 715738..716961 1 NC_003212.1 similar to flagellar biosynthesis protein FlhF; Positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 716961 1129166 lin0689 Listeria innocua Clip11262 flagellar biosynthesis regulator FlhF NP_470032.1 715738 D 272626 CDS NP_470033.1 16799765 1129168 716958..717737 1 NC_003212.1 similar to flagellar hook-basal body protein FlgG; makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 717737 flgG 1129168 flgG Listeria innocua Clip11262 flagellar basal body rod protein FlgG NP_470033.1 716958 D 272626 CDS NP_470034.1 16799766 1129169 717766..718554 1 NC_003212.1 similar to chemotactic methyltransferase CheR; hypothetical protein 718554 1129169 lin0691 Listeria innocua Clip11262 hypothetical protein NP_470034.1 717766 D 272626 CDS NP_470035.1 16799767 1129170 718579..718914 1 NC_003212.1 lin0692; hypothetical protein 718914 1129170 lin0692 Listeria innocua Clip11262 hypothetical protein NP_470035.1 718579 D 272626 CDS NP_470036.1 16799768 1129171 718941..719792 1 NC_003212.1 similar to motility protein (flagellar motor rotation) MotA; With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 719792 1129171 lin0693 Listeria innocua Clip11262 flagellar motor protein MotA NP_470036.1 718941 D 272626 CDS NP_470037.1 16799769 1129173 719752..720579 1 NC_003212.1 similar to motility protein (flagellar motor rotation) MotB; hypothetical protein 720579 1129173 lin0694 Listeria innocua Clip11262 hypothetical protein NP_470037.1 719752 D 272626 CDS NP_470038.1 16799770 1129174 720589..721089 1 NC_003212.1 lin0695; hypothetical protein 721089 1129174 lin0695 Listeria innocua Clip11262 hypothetical protein NP_470038.1 720589 D 272626 CDS NP_470039.1 16799771 1129175 721112..723025 1 NC_003212.1 hypothetical protein 723025 1129175 lin0696 Listeria innocua Clip11262 hypothetical protein NP_470039.1 721112 D 272626 CDS NP_470040.1 16799772 1129176 723038..723946 1 NC_003212.1 similar to CheA activity-modulating chemotaxis protein CheV; hypothetical protein 723946 1129176 lin0697 Listeria innocua Clip11262 hypothetical protein NP_470040.1 723038 D 272626 CDS NP_470041.1 16799773 1129177 724183..725046 1 NC_003212.1 structural flagella protein; flagellin 725046 flaA 1129177 flaA Listeria innocua Clip11262 flagellin NP_470041.1 724183 D 272626 CDS NP_470042.1 16799774 1129178 725321..725680 1 NC_003212.1 chemotaxis response regulator CheY 725680 cheY 1129178 cheY Listeria innocua Clip11262 chemotaxis response regulator CheY NP_470042.1 725321 D 272626 CDS NP_470043.1 16799775 1129179 725700..727556 1 NC_003212.1 two-component sensor histidine kinase CheA 727556 cheA 1129179 cheA Listeria innocua Clip11262 two-component sensor histidine kinase CheA NP_470043.1 725700 D 272626 CDS NP_470044.1 16799776 1129180 727569..727868 1 NC_003212.1 similar to flagellar motor switch protein fliY C-terminal part; flagellar motor switch protein 727868 1129180 lin0701 Listeria innocua Clip11262 flagellar motor switch protein NP_470044.1 727569 D 272626 CDS NP_470045.1 16799777 1129181 727887..728297 1 NC_003212.1 lin0702; hypothetical protein 728297 1129181 lin0702 Listeria innocua Clip11262 hypothetical protein NP_470045.1 727887 D 272626 CDS NP_470046.1 16799778 1129182 728313..729359 1 NC_003212.1 lin0703; hypothetical protein 729359 1129182 lin0703 Listeria innocua Clip11262 hypothetical protein NP_470046.1 728313 D 272626 CDS NP_470047.1 16799779 1129184 729361..729783 1 NC_003212.1 similar to flagellar hook assembly protein; acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 729783 flgD 1129184 flgD Listeria innocua Clip11262 flagellar basal body rod modification protein NP_470047.1 729361 D 272626 CDS NP_470048.1 16799780 1129185 729803..731038 1 NC_003212.1 similar to flagellar hook protein FlgE; the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 731038 flgE 1129185 flgE Listeria innocua Clip11262 flagellar hook protein FlgE NP_470048.1 729803 D 272626 CDS NP_470049.1 16799781 1129186 731052..731288 1 NC_003212.1 weakly similar to flagellar switch protein; One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 731288 1129186 lin0706 Listeria innocua Clip11262 flagellar motor switch protein NP_470049.1 731052 D 272626 CDS NP_470050.1 16799782 1129187 731309..732301 1 NC_003212.1 similar to flagellar switch protein FliM; with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 732301 fliM 1129187 fliM Listeria innocua Clip11262 flagellar motor switch protein FliM NP_470050.1 731309 D 272626 CDS NP_470051.1 16799783 1129189 732304..733845 1 NC_003212.1 similar to flagellar motor switch protein fliY; One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 733845 1129189 lin0708 Listeria innocua Clip11262 flagellar motor switch protein NP_470051.1 732304 D 272626 CDS NP_470052.1 16799784 1129190 733851..735254 1 NC_003212.1 lin0709; hypothetical protein 735254 1129190 lin0709 Listeria innocua Clip11262 hypothetical protein NP_470052.1 733851 D 272626 CDS NP_470053.1 16799785 1129191 735277..736443 1 NC_003212.1 lin0710; hypothetical protein 736443 1129191 lin0710 Listeria innocua Clip11262 hypothetical protein NP_470053.1 735277 D 272626 CDS NP_470054.1 16799786 1129192 736550..737014 1 NC_003212.1 lin0711; hypothetical protein 737014 1129192 lin0711 Listeria innocua Clip11262 hypothetical protein NP_470054.1 736550 D 272626 CDS NP_470055.1 16799787 1129193 737024..737452 1 NC_003212.1 lin0712; hypothetical protein 737452 1129193 lin0712 Listeria innocua Clip11262 hypothetical protein NP_470055.1 737024 D 272626 CDS NP_470056.1 16799788 1129194 737472..738992 1 NC_003212.1 similar to flagellar hook-associated protein FlgK; with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 738992 flgK 1129194 flgK Listeria innocua Clip11262 flagellar hook-associated protein FlgK NP_470056.1 737472 D 272626 CDS NP_470057.1 16799789 1129195 739004..739879 1 NC_003212.1 similar to flagellar hook-associated protein 3 FlgL; with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 739879 flgL 1129195 flgL Listeria innocua Clip11262 flagellar hook-associated protein FlgL NP_470057.1 739004 D 272626 CDS NP_470058.1 16799790 1129196 739891..741180 1 NC_003212.1 similar to flagellar hook-associated protein 2 FliD; involved in flagellin assembly; flagellar capping protein 741180 fliD 1129196 fliD Listeria innocua Clip11262 flagellar capping protein NP_470058.1 739891 D 272626 CDS NP_470059.1 16799791 1129197 741199..741585 1 NC_003212.1 similar to hypothetical flagellar protein; hypothetical protein 741585 1129197 lin0716 Listeria innocua Clip11262 hypothetical protein NP_470059.1 741199 D 272626 CDS NP_470060.1 16799792 1129199 741557..741838 1 NC_003212.1 lin0717; hypothetical protein 741838 1129199 lin0717 Listeria innocua Clip11262 hypothetical protein NP_470060.1 741557 D 272626 CDS NP_470061.1 16799793 1129200 741859..742260 1 NC_003212.1 similar to flagellar basal-body rod protein flgB; with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 742260 flgB 1129200 flgB Listeria innocua Clip11262 flagellar basal body rod protein FlgB NP_470061.1 741859 D 272626 CDS NP_470062.1 16799794 1129201 742272..742682 1 NC_003212.1 similar to flagellar basal-body rod protein flgC; with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 742682 flgC 1129201 flgC Listeria innocua Clip11262 flagellar basal body rod protein FlgC NP_470062.1 742272 D 272626 CDS NP_470063.1 16799795 1129202 742699..742995 1 NC_003212.1 similar to flagellar hook-basal body complex protein FliE; forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 742995 fliE 1129202 fliE Listeria innocua Clip11262 flagellar hook-basal body protein FliE NP_470063.1 742699 D 272626 CDS NP_470064.1 16799796 1129203 743063..744715 1 NC_003212.1 similar to flagellar basal-body M-ring protein fliF; the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 744715 fliF 1129203 fliF Listeria innocua Clip11262 flagellar MS-ring protein NP_470064.1 743063 D 272626 CDS NP_470065.1 16799797 1129204 744719..745825 1 NC_003212.1 similar to flagellar motor switch protein fliG; One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 745825 fliG 1129204 fliG Listeria innocua Clip11262 flagellar motor switch protein G NP_470065.1 744719 D 272626 CDS NP_470066.1 16799798 1129205 745812..746504 1 NC_003212.1 lin0723; binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 746504 fliH 1129205 fliH Listeria innocua Clip11262 flagellar assembly protein H NP_470066.1 745812 D 272626 CDS NP_470067.1 16799799 1129207 746501..747802 1 NC_003212.1 similar to H+-transporting ATP synthase alpha chain FliI, flagellar-specific, -; involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 747802 fliI 1129207 fliI Listeria innocua Clip11262 flagellum-specific ATP synthase NP_470067.1 746501 D 272626 CDS NP_470068.1 16799800 1129208 747819..748490 1 NC_003212.1 similar to transglycosylase; hypothetical protein 748490 1129208 lin0725 Listeria innocua Clip11262 hypothetical protein NP_470068.1 747819 D 272626 CDS NP_470069.1 16799801 1129209 748504..749148 1 NC_003212.1 lin0726; hypothetical protein 749148 1129209 lin0726 Listeria innocua Clip11262 hypothetical protein NP_470069.1 748504 D 272626 CDS NP_470070.1 16799802 1129210 749269..749601 1 NC_003212.1 hypothetical protein 749601 1129210 lin0727 Listeria innocua Clip11262 hypothetical protein NP_470070.1 749269 D 272626 CDS NP_470071.1 16799803 1129212 749594..749917 1 NC_003212.1 lin0728; hypothetical protein 749917 1129212 lin0728 Listeria innocua Clip11262 hypothetical protein NP_470071.1 749594 D 272626 CDS NP_470072.1 16799804 1129213 complement(749962..750609) 1 NC_003212.1 putative fibronectin-binding protein 750609 1129213 lin0729 Listeria innocua Clip11262 putative fibronectin-binding protein NP_470072.1 749962 R 272626 CDS NP_470073.1 16799805 1129214 750881..752611 1 NC_003212.1 similar to pyruvate oxidase; catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase 752611 1129214 lin0730 Listeria innocua Clip11262 pyruvate oxidase NP_470073.1 750881 D 272626 CDS NP_470074.1 16799806 1129215 752773..754572 1 NC_003212.1 similar to metyl-accepting chemotaxis protein; hypothetical protein 754572 1129215 lin0731 Listeria innocua Clip11262 hypothetical protein NP_470074.1 752773 D 272626 CDS NP_470075.1 16799807 1129216 754586..755314 1 NC_003212.1 similar to Bacillus subtilis YvpB protein; hypothetical protein 755314 1129216 lin0732 Listeria innocua Clip11262 hypothetical protein NP_470075.1 754586 D 272626 CDS NP_470076.1 16799808 1129217 complement(755355..755567) 1 NC_003212.1 peptidoglycan binding protein 755567 1129217 lin0733 Listeria innocua Clip11262 peptidoglycan binding protein NP_470076.1 755355 R 272626 CDS NP_470077.1 16799809 1129218 756015..757820 1 NC_003212.1 similar to L-glutamine-D-fructose-6-phosphate amidotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 757820 1129218 lin0734 Listeria innocua Clip11262 glucosamine--fructose-6-phosphate aminotransferase NP_470077.1 756015 D 272626 CDS NP_470078.1 16799810 1129219 757933..758670 1 NC_003212.1 similar to riboflavin kinase / FAD synthase; hypothetical protein 758670 1129219 lin0735 Listeria innocua Clip11262 hypothetical protein NP_470078.1 757933 D 272626 CDS NP_470079.1 16799811 1129220 758756..759235 1 NC_003212.1 lin0736; hypothetical protein 759235 1129220 lin0736 Listeria innocua Clip11262 hypothetical protein NP_470079.1 758756 D 272626 CDS NP_470080.1 16799812 1129221 759249..759587 1 NC_003212.1 lin0737; hypothetical protein 759587 1129221 lin0737 Listeria innocua Clip11262 hypothetical protein NP_470080.1 759249 D 272626 CDS NP_470081.1 16799813 1129222 759735..760130 1 NC_003212.1 lin0738; hypothetical protein 760130 1129222 lin0738 Listeria innocua Clip11262 hypothetical protein NP_470081.1 759735 D 272626 CDS NP_470082.1 16799814 1129223 760366..761931 1 NC_003212.1 internalin like protein (LPXTG) 761931 1129223 lin0739 Listeria innocua Clip11262 internalin like protein (LPXTG) NP_470082.1 760366 D 272626 CDS NP_470083.1 16799815 1129224 complement(761993..763966) 1 NC_003212.1 cell surface protein 763966 1129224 lin0740 Listeria innocua Clip11262 cell surface protein NP_470083.1 761993 R 272626 CDS NP_470084.1 16799816 1129225 764492..766381 1 NC_003212.1 peptidoglycan binding protein 766381 1129225 lin0741 Listeria innocua Clip11262 peptidoglycan binding protein NP_470084.1 764492 D 272626 CDS NP_470085.1 16799817 1129226 complement(766378..767037) 1 NC_003212.1 similar to putative transcription regulator; hypothetical protein 767037 1129226 lin0742 Listeria innocua Clip11262 hypothetical protein NP_470085.1 766378 R 272626 CDS NP_470086.1 16799818 1129228 767299..767676 1 NC_003212.1 similar to transcriptional regulator (GntR family); hypothetical protein 767676 1129228 lin0743 Listeria innocua Clip11262 hypothetical protein NP_470086.1 767299 D 272626 CDS NP_470087.1 16799819 1129230 767660..768349 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 768349 1129230 lin0744 Listeria innocua Clip11262 hypothetical protein NP_470087.1 767660 D 272626 CDS NP_470088.1 16799820 1129232 768346..769050 1 NC_003212.1 lin0745; hypothetical protein 769050 1129232 lin0745 Listeria innocua Clip11262 hypothetical protein NP_470088.1 768346 D 272626 CDS NP_470089.1 16799821 1129233 769065..769397 1 NC_003212.1 similar to ABC transporter, ATP-binding protein (truncated, N-terminal part); hypothetical protein 769397 1129233 lin0746 Listeria innocua Clip11262 hypothetical protein NP_470089.1 769065 D 272626 CDS NP_470090.1 16799822 1129235 771094..771597 1 NC_003212.1 lin0748; hypothetical protein 771597 1129235 lin0748 Listeria innocua Clip11262 hypothetical protein NP_470090.1 771094 D 272626 CDS NP_470091.1 16799823 1129236 771740..772561 1 NC_003212.1 hypothetical protein 772561 1129236 lin0749 Listeria innocua Clip11262 hypothetical protein NP_470091.1 771740 D 272626 CDS NP_470092.1 16799824 1129238 772533..773438 1 NC_003212.1 Similar to ABC transporter (ATP-binding protein); hypothetical protein 773438 1129238 lin0750 Listeria innocua Clip11262 hypothetical protein NP_470092.1 772533 D 272626 CDS NP_470093.1 16799825 1129239 773431..774411 1 NC_003212.1 hypothetical protein 774411 1129239 lin0751 Listeria innocua Clip11262 hypothetical protein NP_470093.1 773431 D 272626 CDS NP_470094.1 16799826 1129240 774538..775428 1 NC_003212.1 lin0752; hypothetical protein 775428 1129240 lin0752 Listeria innocua Clip11262 hypothetical protein NP_470094.1 774538 D 272626 CDS NP_470095.1 16799827 1129242 775425..776384 1 NC_003212.1 lin0753; hypothetical protein 776384 1129242 lin0753 Listeria innocua Clip11262 hypothetical protein NP_470095.1 775425 D 272626 CDS NP_470096.1 16799828 1129244 776392..777000 1 NC_003212.1 lin0754; hypothetical protein 777000 1129244 lin0754 Listeria innocua Clip11262 hypothetical protein NP_470096.1 776392 D 272626 CDS NP_470097.1 16799829 1129245 777010..777630 1 NC_003212.1 hypothetical protein 777630 1129245 lin0755 Listeria innocua Clip11262 hypothetical protein NP_470097.1 777010 D 272626 CDS NP_470098.1 16799830 1129247 777957..779213 1 NC_003212.1 similar to ATP/GTP-binding protein; hypothetical protein 779213 1129247 lin0756 Listeria innocua Clip11262 hypothetical protein NP_470098.1 777957 D 272626 CDS NP_470099.1 16799831 1129248 779279..780160 1 NC_003212.1 hypothetical protein 780160 1129248 lin0757 Listeria innocua Clip11262 hypothetical protein NP_470099.1 779279 D 272626 CDS NP_470100.1 16799832 1129249 780157..781146 1 NC_003212.1 similar to lipoate-protein ligase; hypothetical protein 781146 1129249 lin0758 Listeria innocua Clip11262 hypothetical protein NP_470100.1 780157 D 272626 CDS NP_470101.1 16799833 1129250 781299..782597 1 NC_003212.1 lin0759; hypothetical protein 782597 1129250 lin0759 Listeria innocua Clip11262 hypothetical protein NP_470101.1 781299 D 272626 CDS NP_470102.1 16799834 1129251 782614..783504 1 NC_003212.1 similar to putative sugar ABC transporter, permease protein; hypothetical protein 783504 1129251 lin0760 Listeria innocua Clip11262 hypothetical protein NP_470102.1 782614 D 272626 CDS NP_470103.1 16799835 1129252 783516..784391 1 NC_003212.1 similar to ABC transporter, permease protein; hypothetical protein 784391 1129252 lin0761 Listeria innocua Clip11262 hypothetical protein NP_470103.1 783516 D 272626 CDS NP_470104.1 16799836 1129253 784412..785665 1 NC_003212.1 similar to sugar ABC transporter, periplasmic sugar-binding protein; hypothetical protein 785665 1129253 lin0762 Listeria innocua Clip11262 hypothetical protein NP_470104.1 784412 D 272626 CDS NP_470105.1 16799837 1129255 785669..786694 1 NC_003212.1 similar to alpha-1,6-mannanase; hypothetical protein 786694 1129255 lin0763 Listeria innocua Clip11262 hypothetical protein NP_470105.1 785669 D 272626 CDS NP_470106.1 16799838 1129256 complement(786710..787828) 1 NC_003212.1 similar to transcriptional regulator (LacI family); hypothetical protein 787828 1129256 lin0764 Listeria innocua Clip11262 hypothetical protein NP_470106.1 786710 R 272626 CDS NP_470107.1 16799839 1129257 787989..788741 1 NC_003212.1 lin0765; hypothetical protein 788741 1129257 lin0765 Listeria innocua Clip11262 hypothetical protein NP_470107.1 787989 D 272626 CDS NP_470108.1 16799840 1129258 788776..789426 1 NC_003212.1 similar to transcription regulator; hypothetical protein 789426 1129258 lin0766 Listeria innocua Clip11262 hypothetical protein NP_470108.1 788776 D 272626 CDS NP_470109.1 16799841 1129259 complement(789465..790454) 1 NC_003212.1 similar to alcohol dehydrogenase; hypothetical protein 790454 1129259 lin0767 Listeria innocua Clip11262 hypothetical protein NP_470109.1 789465 R 272626 CDS NP_470110.1 16799842 1129260 790632..791561 1 NC_003212.1 hypothetical protein 791561 1129260 lin0768 Listeria innocua Clip11262 hypothetical protein NP_470110.1 790632 D 272626 CDS NP_470111.1 16799843 1129261 791613..791945 1 NC_003212.1 lin0769; hypothetical protein 791945 1129261 lin0769 Listeria innocua Clip11262 hypothetical protein NP_470111.1 791613 D 272626 CDS NP_470112.1 16799844 1129262 complement(791983..792849) 1 NC_003212.1 similar to transcription regulator (repressor); hypothetical protein 792849 1129262 lin0770 Listeria innocua Clip11262 hypothetical protein NP_470112.1 791983 R 272626 CDS NP_470113.1 16799845 1129263 793007..793390 1 NC_003212.1 lin0771; hypothetical protein 793390 1129263 lin0771 Listeria innocua Clip11262 hypothetical protein NP_470113.1 793007 D 272626 CDS NP_470114.1 16799846 1129264 complement(793559..794812) 1 NC_003212.1 lin0772; hypothetical protein 794812 1129264 lin0772 Listeria innocua Clip11262 hypothetical protein NP_470114.1 793559 R 272626 CDS NP_470115.1 16799847 1129265 complement(795075..795542) 1 NC_003212.1 lin0773; hypothetical protein 795542 1129265 lin0773 Listeria innocua Clip11262 hypothetical protein NP_470115.1 795075 R 272626 CDS NP_470116.1 16799848 1129266 complement(795659..796537) 1 NC_003212.1 similar to mannose-specific phosphotransferase system (PTS) component IID; hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 796537 1129266 lin0774 Listeria innocua Clip11262 PTS system mannose-specific transporter subunit IID NP_470116.1 795659 R 272626 CDS NP_470117.1 16799849 1129267 complement(796556..797371) 1 NC_003212.1 similar to mannose-specific phosphotransferase system (PTS) component IIC; hypothetical protein 797371 1129267 lin0775 Listeria innocua Clip11262 hypothetical protein NP_470117.1 796556 R 272626 CDS NP_470118.1 16799850 1129268 complement(797533..798018) 1 NC_003212.1 similar to mannose-specific phosphotransferase system (PTS) component IIB; hypothetical protein 798018 1129268 lin0776 Listeria innocua Clip11262 hypothetical protein NP_470118.1 797533 R 272626 CDS NP_470119.1 16799851 1129269 complement(798018..798452) 1 NC_003212.1 similar to mannose-specific phosphotransferase system (PTS) component IIA; hypothetical protein 798452 1129269 lin0777 Listeria innocua Clip11262 hypothetical protein NP_470119.1 798018 R 272626 CDS NP_470120.1 16799852 1129271 complement(798741..801557) 1 NC_003212.1 similar to transcriptional regulator (NifA/NtrC family); hypothetical protein 801557 1129271 lin0778 Listeria innocua Clip11262 hypothetical protein NP_470120.1 798741 R 272626 CDS NP_470121.1 16799853 1129272 801753..802388 1 NC_003212.1 similar to acyl-carrier protein phosphodiesterase and to NAD(P)H dehydrogenase; hypothetical protein 802388 1129272 lin0779 Listeria innocua Clip11262 hypothetical protein NP_470121.1 801753 D 272626 CDS NP_470122.1 16799854 1129273 802582..803958 1 NC_003212.1 similar to amino acid transporter; hypothetical protein 803958 1129273 lin0780 Listeria innocua Clip11262 hypothetical protein NP_470122.1 802582 D 272626 CDS NP_470123.1 16799855 1129274 804223..808650 1 NC_003212.1 lin0781; hypothetical protein 808650 1129274 lin0781 Listeria innocua Clip11262 hypothetical protein NP_470123.1 804223 D 272626 CDS NP_470124.1 16799856 1129275 complement(808685..809533) 1 NC_003212.1 hypothetical protein 809533 1129275 lin0782 Listeria innocua Clip11262 hypothetical protein NP_470124.1 808685 R 272626 CDS NP_470125.1 16799857 1129276 complement(809559..810035) 1 NC_003212.1 similar to transcription regulator (EbsC from Enterococcus faecalis); hypothetical protein 810035 1129276 lin0783 Listeria innocua Clip11262 hypothetical protein NP_470125.1 809559 R 272626 CDS NP_470126.1 16799858 1129277 810159..810815 1 NC_003212.1 lin0784; hypothetical protein 810815 1129277 lin0784 Listeria innocua Clip11262 hypothetical protein NP_470126.1 810159 D 272626 CDS NP_470127.1 16799859 1129278 810915..811805 1 NC_003212.1 similar to conserved hypothetical protein; hypothetical protein 811805 1129278 lin0785 Listeria innocua Clip11262 hypothetical protein NP_470127.1 810915 D 272626 CDS NP_470128.1 16799860 1129279 complement(811840..812541) 1 NC_003212.1 similar to conserved hypothetical protein; hypothetical protein 812541 1129279 lin0786 Listeria innocua Clip11262 hypothetical protein NP_470128.1 811840 R 272626 CDS NP_470129.1 16799861 1129280 complement(812656..813297) 1 NC_003212.1 similar to Bacillus subtilis YwnB protein; hypothetical protein 813297 1129280 lin0787 Listeria innocua Clip11262 hypothetical protein NP_470129.1 812656 R 272626 CDS NP_470130.1 16799862 1129281 complement(813385..814311) 1 NC_003212.1 hypothetical protein 814311 1129281 lin0788 Listeria innocua Clip11262 hypothetical protein NP_470130.1 813385 R 272626 CDS NP_470131.1 16799863 1129282 complement(814421..814951) 1 NC_003212.1 hypothetical protein 814951 1129282 lin0789 Listeria innocua Clip11262 hypothetical protein NP_470131.1 814421 R 272626 CDS NP_470132.1 16799864 1129283 815207..815668 1 NC_003212.1 lin0790; hypothetical protein 815668 1129283 lin0790 Listeria innocua Clip11262 hypothetical protein NP_470132.1 815207 D 272626 CDS NP_470133.1 16799865 1129284 complement(815720..817180) 1 NC_003212.1 similar to lysine-specific permease; hypothetical protein 817180 1129284 lin0791 Listeria innocua Clip11262 hypothetical protein NP_470133.1 815720 R 272626 CDS NP_470134.1 16799866 1129285 complement(817538..818299) 1 NC_003212.1 lin0792; hypothetical protein 818299 1129285 lin0792 Listeria innocua Clip11262 hypothetical protein NP_470134.1 817538 R 272626 CDS NP_470135.1 16799867 1129286 818452..818802 1 NC_003212.1 similar to Bacillus subtilis YqkB protein; hypothetical protein 818802 1129286 lin0793 Listeria innocua Clip11262 hypothetical protein NP_470135.1 818452 D 272626 CDS NP_470136.1 16799868 1129287 818953..819591 1 NC_003212.1 weakly similar to GTP-pyrophosphokinase; hypothetical protein 819591 1129287 lin0794 Listeria innocua Clip11262 hypothetical protein NP_470136.1 818953 D 272626 CDS NP_470137.1 16799869 1129288 819721..821769 1 NC_003212.1 similar to putative Na+/H+ antiporter; hypothetical protein 821769 1129288 lin0795 Listeria innocua Clip11262 hypothetical protein NP_470137.1 819721 D 272626 CDS NP_470138.1 16799870 1129289 821979..822521 1 NC_003212.1 similar to transcription regulator; hypothetical protein 822521 1129289 lin0796 Listeria innocua Clip11262 hypothetical protein NP_470138.1 821979 D 272626 CDS NP_470139.1 16799871 1129290 822537..823631 1 NC_003212.1 similar to spermidine/putrescine ABC transporter, ATP-binding protein; hypothetical protein 823631 1129290 lin0797 Listeria innocua Clip11262 hypothetical protein NP_470139.1 822537 D 272626 CDS NP_470140.1 16799872 1129292 823631..824440 1 NC_003212.1 similar to spermidine/putrescine ABC transporter, permease protein; hypothetical protein 824440 1129292 lin0798 Listeria innocua Clip11262 hypothetical protein NP_470140.1 823631 D 272626 CDS NP_470141.1 16799873 1129294 824437..825243 1 NC_003212.1 similar to spermidine/putrescine ABC transporter, permease protein; hypothetical protein 825243 1129294 lin0799 Listeria innocua Clip11262 hypothetical protein NP_470141.1 824437 D 272626 CDS NP_470142.1 16799874 1129295 825240..826313 1 NC_003212.1 similar to spermidine/putrescine-binding protein; hypothetical protein 826313 1129295 lin0800 Listeria innocua Clip11262 hypothetical protein NP_470142.1 825240 D 272626 CDS NP_470143.1 16799875 1129296 826700..827422 1 NC_003212.1 similar to two-component response regulators; hypothetical protein 827422 1129296 lin0801 Listeria innocua Clip11262 hypothetical protein NP_470143.1 826700 D 272626 CDS NP_470144.1 16799876 1129297 827483..828784 1 NC_003212.1 similar to two-component sensor histidine kinases; hypothetical protein 828784 1129297 lin0802 Listeria innocua Clip11262 hypothetical protein NP_470144.1 827483 D 272626 CDS NP_470145.1 16799877 1129298 829124..833284 1 NC_003212.1 cell wall anchor domain-containing protein 833284 1129298 lin0803 Listeria innocua Clip11262 cell wall anchor domain-containing protein NP_470145.1 829124 D 272626 CDS NP_470146.1 16799878 1129299 833484..834476 1 NC_003212.1 hypothetical protein 834476 1129299 lin0804 Listeria innocua Clip11262 hypothetical protein NP_470146.1 833484 D 272626 CDS NP_470147.1 16799879 1129300 complement(834617..835390) 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 835390 1129300 lin0805 Listeria innocua Clip11262 hypothetical protein NP_470147.1 834617 R 272626 CDS NP_470148.1 16799880 1129301 complement(835475..835846) 1 NC_003212.1 similar to transcriptional regulator, MerR family; hypothetical protein 835846 1129301 lin0806 Listeria innocua Clip11262 hypothetical protein NP_470148.1 835475 R 272626 CDS NP_470149.1 16799881 1129302 836162..836863 1 NC_003212.1 similar to carbonic anhydrase; hypothetical protein 836863 1129302 lin0807 Listeria innocua Clip11262 hypothetical protein NP_470149.1 836162 D 272626 CDS NP_470150.1 16799882 1129303 836931..837473 1 NC_003212.1 lin0808; hypothetical protein 837473 1129303 lin0808 Listeria innocua Clip11262 hypothetical protein NP_470150.1 836931 D 272626 CDS NP_470151.1 16799883 1129304 837611..838483 1 NC_003212.1 similar to fructokinases; hypothetical protein 838483 1129304 lin0809 Listeria innocua Clip11262 hypothetical protein NP_470151.1 837611 D 272626 CDS NP_470152.1 16799884 1129305 838568..839497 1 NC_003212.1 similar to oxidoreductases; hypothetical protein 839497 1129305 lin0810 Listeria innocua Clip11262 hypothetical protein NP_470152.1 838568 D 272626 CDS NP_470153.1 16799885 1129306 839719..840171 1 NC_003212.1 similar to transcription regulators; hypothetical protein 840171 1129306 lin0811 Listeria innocua Clip11262 hypothetical protein NP_470153.1 839719 D 272626 CDS NP_470154.1 16799886 1129307 840187..840693 1 NC_003212.1 similar to Bacillus subtilis regulatory protein PaiA; hypothetical protein 840693 1129307 lin0812 Listeria innocua Clip11262 hypothetical protein NP_470154.1 840187 D 272626 CDS NP_470155.1 16799887 1129308 complement(840717..841130) 1 NC_003212.1 similar to Escherichia coli PhnB protein; hypothetical protein 841130 1129308 lin0813 Listeria innocua Clip11262 hypothetical protein NP_470155.1 840717 R 272626 CDS NP_470156.1 16799888 1129309 841354..843984 1 NC_003212.1 similar to cation transporting ATPase; hypothetical protein 843984 1129309 lin0814 Listeria innocua Clip11262 hypothetical protein NP_470156.1 841354 D 272626 CDS NP_470157.1 16799889 1129310 843999..844847 1 NC_003212.1 lin0815; hypothetical protein 844847 1129310 lin0815 Listeria innocua Clip11262 hypothetical protein NP_470157.1 843999 D 272626 CDS NP_470158.1 16799890 1129311 844959..845516 1 NC_003212.1 some similarity to acatyltransferases; hypothetical protein 845516 1129311 lin0816 Listeria innocua Clip11262 hypothetical protein NP_470158.1 844959 D 272626 CDS NP_470159.1 16799891 1129312 845533..846192 1 NC_003212.1 lin0817; hypothetical protein 846192 1129312 lin0817 Listeria innocua Clip11262 hypothetical protein NP_470159.1 845533 D 272626 CDS NP_470160.1 16799892 1129313 complement(846211..846600) 1 NC_003212.1 similar to transcriptional regulators; hypothetical protein 846600 1129313 lin0818 Listeria innocua Clip11262 hypothetical protein NP_470160.1 846211 R 272626 CDS NP_470161.1 16799893 1129314 846721..847545 1 NC_003212.1 similar to oxydoreductases; hypothetical protein 847545 1129314 lin0819 Listeria innocua Clip11262 hypothetical protein NP_470161.1 846721 D 272626 CDS NP_470162.1 16799894 1129315 847656..848624 1 NC_003212.1 lin0820; hypothetical protein 848624 1129315 lin0820 Listeria innocua Clip11262 hypothetical protein NP_470162.1 847656 D 272626 CDS NP_470163.1 16799895 1129316 848666..849946 1 NC_003212.1 similar to 3-hydroxy-3-methylglutaryl-coenzyme a reductase; hypothetical protein 849946 1129316 lin0821 Listeria innocua Clip11262 hypothetical protein NP_470163.1 848666 D 272626 CDS NP_470164.1 16799896 1129317 850143..850904 1 NC_003212.1 similar to transport protein (Truncated, N-terminal part); hypothetical protein 850904 1129317 lin0822 Listeria innocua Clip11262 hypothetical protein NP_470164.1 850143 D 272626 CDS NP_470165.1 16799897 1129318 850919..851776 1 NC_003212.1 similar to transport protein (truncated, C-terminal part); hypothetical protein 851776 1129318 lin0823 Listeria innocua Clip11262 hypothetical protein NP_470165.1 850919 D 272626 CDS NP_470166.1 16799898 1129319 851932..855582 1 NC_003212.1 highly similar to pyruvate-flavodoxin oxidoreductase; hypothetical protein 855582 1129319 lin0824 Listeria innocua Clip11262 hypothetical protein NP_470166.1 851932 D 272626 CDS NP_470167.1 16799899 1129320 complement(855833..857794) 1 NC_003212.1 highly similar to fructose-1,6-bisphosphatase; hypothetical protein 857794 1129320 lin0825 Listeria innocua Clip11262 hypothetical protein NP_470167.1 855833 R 272626 CDS NP_470168.1 16799900 1129321 complement(857907..858818) 1 NC_003212.1 lin0826; hypothetical protein 858818 1129321 lin0826 Listeria innocua Clip11262 hypothetical protein NP_470168.1 857907 R 272626 CDS NP_470169.1 16799901 1129322 859530..859808 1 NC_003212.1 similar to transposase; hypothetical protein 859808 1129322 lin0827 Listeria innocua Clip11262 hypothetical protein NP_470169.1 859530 D 272626 CDS NP_470170.1 16799902 1129323 complement(859848..860261) 1 NC_003212.1 similar to Bacillus subtilis YrkR protein; phosphate-starvation-inducible protein PsiE 860261 1129323 lin0828 Listeria innocua Clip11262 phosphate-starvation-inducible protein PsiE NP_470170.1 859848 R 272626 CDS NP_470171.1 16799903 1129324 860435..862072 1 NC_003212.1 similar to ABC transporter (ATP binding protein); hypothetical protein 862072 1129324 lin0829 Listeria innocua Clip11262 hypothetical protein NP_470171.1 860435 D 272626 CDS NP_470172.1 16799904 1129325 complement(862103..863314) 1 NC_003212.1 similar to Tetracycline resistance protein; hypothetical protein 863314 1129325 lin0830 Listeria innocua Clip11262 hypothetical protein NP_470172.1 862103 R 272626 CDS NP_470173.1 16799905 1129326 complement(863446..863916) 1 NC_003212.1 lin0831; hypothetical protein 863916 1129326 lin0831 Listeria innocua Clip11262 hypothetical protein NP_470173.1 863446 R 272626 CDS NP_470174.1 16799906 1129327 864122..866770 1 NC_003212.1 similar to cation (calcium) transporting ATPase; hypothetical protein 866770 1129327 lin0832 Listeria innocua Clip11262 hypothetical protein NP_470174.1 864122 D 272626 CDS NP_470175.1 16799907 1129328 867168..868637 1 NC_003212.1 lin0833; hypothetical protein 868637 1129328 lin0833 Listeria innocua Clip11262 hypothetical protein NP_470175.1 867168 D 272626 CDS NP_470176.1 16799908 1129330 868621..869730 1 NC_003212.1 some similarities to hypothetical proteins; hypothetical protein 869730 1129330 lin0834 Listeria innocua Clip11262 hypothetical protein NP_470176.1 868621 D 272626 CDS NP_470177.1 16799909 1129332 869723..870580 1 NC_003212.1 lin0835; hypothetical protein 870580 1129332 lin0835 Listeria innocua Clip11262 hypothetical protein NP_470177.1 869723 D 272626 CDS NP_470178.1 16799910 1129333 complement(870970..871227) 1 NC_003212.1 similar to Bacillus subtilis protein YsdA; hypothetical protein 871227 1129333 lin0836 Listeria innocua Clip11262 hypothetical protein NP_470178.1 870970 R 272626 CDS NP_470179.1 16799911 1129334 871306..871683 1 NC_003212.1 hypothetical protein 871683 1129334 lin0837 Listeria innocua Clip11262 hypothetical protein NP_470179.1 871306 D 272626 CDS NP_470180.1 16799912 1129335 871939..873042 1 NC_003212.1 similar to Bacillus subtilis YxjH and YxjG proteins; hypothetical protein 873042 1129335 lin0838 Listeria innocua Clip11262 hypothetical protein NP_470180.1 871939 D 272626 CDS NP_470181.1 16799913 1129336 873139..874239 1 NC_003212.1 similar to excinuclease ABC, chain C (UvrC); hypothetical protein 874239 1129336 lin0839 Listeria innocua Clip11262 hypothetical protein NP_470181.1 873139 D 272626 CDS NP_470182.1 16799914 1129337 874410..875852 1 NC_003212.1 similar to Glutamine ABC transporter (binding and transport protein); hypothetical protein 875852 1129337 lin0840 Listeria innocua Clip11262 hypothetical protein NP_470182.1 874410 D 272626 CDS NP_470183.1 16799915 1129338 875845..876573 1 NC_003212.1 similar to amino acid ABC transporter, ATP-binding protein; hypothetical protein 876573 1129338 lin0841 Listeria innocua Clip11262 hypothetical protein NP_470183.1 875845 D 272626 CDS NP_470184.1 16799916 1129339 complement(876617..878536) 1 NC_003212.1 similar to amidases; catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 878536 1129339 lin0842 Listeria innocua Clip11262 amidase NP_470184.1 876617 R 272626 CDS NP_470185.1 16799917 1129340 879012..879158 1 NC_003212.1 hypothetical protein 879158 1129340 lin0843 Listeria innocua Clip11262 hypothetical protein NP_470185.1 879012 D 272626 CDS NP_470186.1 16799918 1129341 879384..880142 1 NC_003212.1 lin0844; hypothetical protein 880142 1129341 lin0844 Listeria innocua Clip11262 hypothetical protein NP_470186.1 879384 D 272626 CDS NP_470187.1 16799919 1129342 880224..880778 1 NC_003212.1 similar to transcription regulator TetR/AcrR family; hypothetical protein 880778 1129342 lin0845 Listeria innocua Clip11262 hypothetical protein NP_470187.1 880224 D 272626 CDS NP_470188.1 16799920 1129343 880795..881136 1 NC_003212.1 similar to Escherichia coli SugE protein (transmembrane chaperone); hypothetical protein 881136 1129343 lin0846 Listeria innocua Clip11262 hypothetical protein NP_470188.1 880795 D 272626 CDS NP_470189.1 16799921 1129345 881139..881459 1 NC_003212.1 similar to Escherichia coli SugE protein (transmembrane chaperone); hypothetical protein 881459 1129345 lin0847 Listeria innocua Clip11262 hypothetical protein NP_470189.1 881139 D 272626 CDS NP_470190.1 16799922 1129346 881610..882722 1 NC_003212.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 882722 ddl 1129346 ddl Listeria innocua Clip11262 D-alanyl-alanine synthetase A NP_470190.1 881610 D 272626 CDS NP_470191.1 16799923 1129347 882786..884159 1 NC_003212.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase 884159 murF 1129347 murF Listeria innocua Clip11262 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase NP_470191.1 882786 D 272626 CDS NP_470192.1 16799924 1129348 884226..884939 1 NC_003212.1 similar to carboxylesterase; hypothetical protein 884939 1129348 lin0850 Listeria innocua Clip11262 hypothetical protein NP_470192.1 884226 D 272626 CDS NP_470193.1 16799925 1129349 complement(884950..885975) 1 NC_003212.1 similar to transcription regulator lacI family; hypothetical protein 885975 1129349 lin0851 Listeria innocua Clip11262 hypothetical protein NP_470193.1 884950 R 272626 CDS NP_470194.1 16799926 1129350 886220..887542 1 NC_003212.1 similar to putative sugar ABC transporter, periplasmic sugar-binding protein; hypothetical protein 887542 1129350 lin0852 Listeria innocua Clip11262 hypothetical protein NP_470194.1 886220 D 272626 CDS NP_470195.1 16799927 1129351 887539..888417 1 NC_003212.1 similar to sugar ABC transporter, permease protein; hypothetical protein 888417 1129351 lin0853 Listeria innocua Clip11262 hypothetical protein NP_470195.1 887539 D 272626 CDS NP_470196.1 16799928 1129353 888404..889237 1 NC_003212.1 similar to sugar ABC transporter, permease protein -; hypothetical protein 889237 1129353 lin0854 Listeria innocua Clip11262 hypothetical protein NP_470196.1 888404 D 272626 CDS NP_470197.1 16799929 1129354 889253..890785 1 NC_003212.1 similar to oligo-1,6-glucosidase; hypothetical protein 890785 1129354 lin0855 Listeria innocua Clip11262 hypothetical protein NP_470197.1 889253 D 272626 CDS NP_470198.1 16799930 1129356 890787..891701 1 NC_003212.1 lin0856; hypothetical protein 891701 1129356 lin0856 Listeria innocua Clip11262 hypothetical protein NP_470198.1 890787 D 272626 CDS NP_470199.1 16799931 1129357 891723..892790 1 NC_003212.1 lin0857; hypothetical protein 892790 1129357 lin0857 Listeria innocua Clip11262 hypothetical protein NP_470199.1 891723 D 272626 CDS NP_470200.1 16799932 1129358 892787..894460 1 NC_003212.1 similar to phosphomannomutase; hypothetical protein 894460 1129358 lin0858 Listeria innocua Clip11262 hypothetical protein NP_470200.1 892787 D 272626 CDS NP_470201.1 16799933 1129359 894912..896462 1 NC_003212.1 similar to ATP-dependent RNA helicase; hypothetical protein 896462 1129359 lin0859 Listeria innocua Clip11262 hypothetical protein NP_470201.1 894912 D 272626 CDS NP_470202.1 16799934 1129360 896906..897394 1 NC_003212.1 lin0860; hypothetical protein 897394 1129360 lin0860 Listeria innocua Clip11262 hypothetical protein NP_470202.1 896906 D 272626 CDS NP_470203.1 16799935 1129361 complement(897426..897983) 1 NC_003212.1 lin0861; hypothetical protein 897983 1129361 lin0861 Listeria innocua Clip11262 hypothetical protein NP_470203.1 897426 R 272626 CDS NP_470204.1 16799936 1129362 898085..899083 1 NC_003212.1 lin0862; hypothetical protein 899083 1129362 lin0862 Listeria innocua Clip11262 hypothetical protein NP_470204.1 898085 D 272626 CDS NP_470205.1 16799937 1129363 899100..899411 1 NC_003212.1 lin0863; hypothetical protein 899411 1129363 lin0863 Listeria innocua Clip11262 hypothetical protein NP_470205.1 899100 D 272626 CDS NP_470206.1 16799938 1129364 complement(899647..900486) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 900486 1129364 lin0864 Listeria innocua Clip11262 hypothetical protein NP_470206.1 899647 R 272626 CDS NP_470207.1 16799939 1129365 900943..901338 1 NC_003212.1 hypothetical protein 901338 1129365 lin0865 Listeria innocua Clip11262 hypothetical protein NP_470207.1 900943 D 272626 CDS NP_470208.1 16799940 1129366 901382..902053 1 NC_003212.1 similar to ABC transporters, ATP-binding protein homologue; hypothetical protein 902053 1129366 lin0866 Listeria innocua Clip11262 hypothetical protein NP_470208.1 901382 D 272626 CDS NP_470209.1 16799941 1129368 902046..903311 1 NC_003212.1 lin0867; hypothetical protein 903311 1129368 lin0867 Listeria innocua Clip11262 hypothetical protein NP_470209.1 902046 D 272626 CDS NP_470210.1 16799942 1129369 903326..904462 1 NC_003212.1 lin0868; hypothetical protein 904462 1129369 lin0868 Listeria innocua Clip11262 hypothetical protein NP_470210.1 903326 D 272626 CDS NP_470211.1 16799943 1129370 complement(904570..904923) 1 NC_003212.1 similar to Bacillus subtilis YtcD protein; hypothetical protein 904923 1129370 lin0869 Listeria innocua Clip11262 hypothetical protein NP_470211.1 904570 R 272626 CDS NP_470212.1 16799944 1129371 905051..906217 1 NC_003212.1 similar to antibiotic resistance protein; hypothetical protein 906217 1129371 lin0870 Listeria innocua Clip11262 hypothetical protein NP_470212.1 905051 D 272626 CDS NP_470213.1 16799945 1129372 906425..908443 1 NC_003212.1 Similar to transcriptional regulator (antiterminator); hypothetical protein 908443 1129372 lin0871 Listeria innocua Clip11262 hypothetical protein NP_470213.1 906425 D 272626 CDS NP_470214.1 16799946 1129373 908458..908787 1 NC_003212.1 similar to PTS system enzyme IIA component; hypothetical protein 908787 1129373 lin0872 Listeria innocua Clip11262 hypothetical protein NP_470214.1 908458 D 272626 CDS NP_470215.1 16799947 1129375 908788..909123 1 NC_003212.1 similar to PTS system, beta-glucoside enzyme IIB component; hypothetical protein 909123 1129375 lin0873 Listeria innocua Clip11262 hypothetical protein NP_470215.1 908788 D 272626 CDS NP_470216.1 16799948 1129376 909144..910469 1 NC_003212.1 similar to PTS system, Lichenan-specific enzyme IIC component; hypothetical protein 910469 1129376 lin0874 Listeria innocua Clip11262 hypothetical protein NP_470216.1 909144 D 272626 CDS NP_470217.1 16799949 1129377 910492..911220 1 NC_003212.1 similar to Bacillus subtilis NagB protein (glucosamine-6-phosphate isomerase); hypothetical protein 911220 1129377 lin0875 Listeria innocua Clip11262 hypothetical protein NP_470217.1 910492 D 272626 CDS NP_470218.1 16799950 1129378 911220..912173 1 NC_003212.1 similar to oxidoreductases; hypothetical protein 912173 1129378 lin0876 Listeria innocua Clip11262 hypothetical protein NP_470218.1 911220 D 272626 CDS NP_470219.1 16799951 1129379 912191..912367 1 NC_003212.1 hypothetical protein 912367 1129379 lin0877 Listeria innocua Clip11262 hypothetical protein NP_470219.1 912191 D 272626 CDS NP_470220.1 16799952 1129381 913072..914463 1 NC_003212.1 similar to wall associated protein precursor (LPXTG motif); hypothetical protein 914463 1129381 lin0879 Listeria innocua Clip11262 hypothetical protein NP_470220.1 913072 D 272626 CDS NP_470221.1 16799953 1129382 complement(914504..914980) 1 NC_003212.1 lin0880; hypothetical protein 914980 1129382 lin0880 Listeria innocua Clip11262 hypothetical protein NP_470221.1 914504 R 272626 CDS NP_470222.1 16799954 1129383 915114..915596 1 NC_003212.1 similar to Bacillus subtilis YdbS protein; hypothetical protein 915596 1129383 lin0881 Listeria innocua Clip11262 hypothetical protein NP_470222.1 915114 D 272626 CDS NP_470223.1 16799955 1129385 915589..917073 1 NC_003212.1 similar to Bacillus subtilis YbtB protein; hypothetical protein 917073 1129385 lin0882 Listeria innocua Clip11262 hypothetical protein NP_470223.1 915589 D 272626 CDS NP_470224.1 16799956 1129386 917224..918603 1 NC_003212.1 similar to protoporphyrinogen IX and coproporphyrinogen III oxidase (HemY); catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 918603 1129386 lin0883 Listeria innocua Clip11262 protoporphyrinogen oxidase NP_470224.1 917224 D 272626 CDS NP_470225.1 16799957 1129387 918605..918961 1 NC_003212.1 similar to holo-acyl-carrier protein synthase; Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 918961 acpS 1129387 acpS Listeria innocua Clip11262 4'-phosphopantetheinyl transferase NP_470225.1 918605 D 272626 CDS NP_470226.1 16799958 1129388 918980..920086 1 NC_003212.1 similar to alanine racemase; hypothetical protein 920086 1129388 lin0885 Listeria innocua Clip11262 hypothetical protein NP_470226.1 918980 D 272626 CDS NP_470227.1 16799959 1129389 920292..920570 1 NC_003212.1 similar to Bacillus subtilis YdcD protein; hypothetical protein 920570 1129389 lin0886 Listeria innocua Clip11262 hypothetical protein NP_470227.1 920292 D 272626 CDS NP_470228.1 16799960 1129391 920574..920921 1 NC_003212.1 similar to Bacillus subtilis YdcE protein; hypothetical protein 920921 1129391 lin0887 Listeria innocua Clip11262 hypothetical protein NP_470228.1 920574 D 272626 CDS NP_470229.1 16799961 1129392 921173..922009 1 NC_003212.1 highly similar to positive regulator of sigma-B activity; hypothetical protein 922009 1129392 lin0888 Listeria innocua Clip11262 hypothetical protein NP_470229.1 921173 D 272626 CDS NP_470230.1 16799962 1129394 922015..922371 1 NC_003212.1 highly similar to negative regulation of sigma-B activity; hypothetical protein 922371 1129394 lin0889 Listeria innocua Clip11262 hypothetical protein NP_470230.1 922015 D 272626 CDS NP_470231.1 16799963 1129395 922374..922784 1 NC_003212.1 highly similar to positive regulation of sigma-B activity; hypothetical protein 922784 1129395 lin0890 Listeria innocua Clip11262 hypothetical protein NP_470231.1 922374 D 272626 CDS NP_470232.1 16799964 1129396 922801..923805 1 NC_003212.1 highly similar to serine phosphatase RsbU; hypothetical protein 923805 1129396 lin0891 Listeria innocua Clip11262 hypothetical protein NP_470232.1 922801 D 272626 CDS NP_470233.1 16799965 1129397 923955..924299 1 NC_003212.1 anti-anti-sigma factor (antagonist of RsbW) 924299 rsbV 1129397 rsbV Listeria innocua Clip11262 anti-anti-sigma factor (antagonist of RsbW) NP_470233.1 923955 D 272626 CDS NP_470234.1 16799966 1129399 924283..924756 1 NC_003212.1 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW 924756 rsbW 1129399 rsbW Listeria innocua Clip11262 serine-protein kinase RsbW NP_470234.1 924283 D 272626 CDS NP_470235.1 16799967 1129401 924734..925513 1 NC_003212.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB 925513 sigB 1129401 sigB Listeria innocua Clip11262 RNA polymerase sigma factor SigB NP_470235.1 924734 D 272626 CDS NP_470236.1 16799968 1129403 925514..926113 1 NC_003212.1 indirect negative regulation of sigma B dependant gene expression (serine phosphatase) 926113 rsbX 1129403 rsbX Listeria innocua Clip11262 indirect negative regulation of sigma B dependant gene expression (serine phosphatase) NP_470236.1 925514 D 272626 CDS NP_470237.1 16799969 1129404 926317..927951 1 NC_003212.1 similar to transport proteins; hypothetical protein 927951 1129404 lin0896 Listeria innocua Clip11262 hypothetical protein NP_470237.1 926317 D 272626 CDS NP_470238.1 16799970 1129405 928019..930196 1 NC_003212.1 hypothetical protein 930196 1129405 lin0897 Listeria innocua Clip11262 hypothetical protein NP_470238.1 928019 D 272626 CDS NP_470239.1 16799971 1129406 930196..930663 1 NC_003212.1 similar to Bacillus subtilis YdcK protein; hypothetical protein 930663 1129406 lin0898 Listeria innocua Clip11262 hypothetical protein NP_470239.1 930196 D 272626 CDS NP_470240.1 16799972 1129407 930995..931387 1 NC_003212.1 lin0899; hypothetical protein 931387 1129407 lin0899 Listeria innocua Clip11262 hypothetical protein NP_470240.1 930995 D 272626 CDS NP_470241.1 16799973 1129408 931529..932815 1 NC_003212.1 similar to PTS system, cellobiose-specific IIC component; hypothetical protein 932815 1129408 lin0900 Listeria innocua Clip11262 hypothetical protein NP_470241.1 931529 D 272626 CDS NP_470242.1 16799974 1129409 932896..933609 1 NC_003212.1 similar to transcription regulator (GntR family); hypothetical protein 933609 1129409 lin0901 Listeria innocua Clip11262 hypothetical protein NP_470242.1 932896 D 272626 CDS NP_470243.1 16799975 1129410 934108..934488 1 NC_003212.1 hypothetical protein 934488 1129410 lin0902 Listeria innocua Clip11262 hypothetical protein NP_470243.1 934108 D 272626 CDS NP_470244.1 16799976 1129411 934605..934895 1 NC_003212.1 truncated N-terminal part 934895 1129411 lin0903 Listeria innocua Clip11262 truncated N-terminal part NP_470244.1 934605 D 272626 CDS NP_470245.1 16799977 1129413 935411..935908 1 NC_003212.1 lin0905; hypothetical protein 935908 1129413 lin0905 Listeria innocua Clip11262 hypothetical protein NP_470245.1 935411 D 272626 CDS NP_470246.1 16799978 1129414 935944..937293 1 NC_003212.1 similar to glutathione Reductase; catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 937293 1129414 lin0906 Listeria innocua Clip11262 glutathione reductase NP_470246.1 935944 D 272626 CDS NP_470247.1 16799979 1129415 937322..937996 1 NC_003212.1 similar to phosphoglycerate mutase; hypothetical protein 937996 1129415 lin0907 Listeria innocua Clip11262 hypothetical protein NP_470247.1 937322 D 272626 CDS NP_470248.1 16799980 1129416 complement(938039..939175) 1 NC_003212.1 similar to membrane proteins; hypothetical protein 939175 1129416 lin0908 Listeria innocua Clip11262 hypothetical protein NP_470248.1 938039 R 272626 CDS NP_470249.1 16799981 1129417 939317..939709 1 NC_003212.1 similar to transcription regulator, GntR family; hypothetical protein 939709 1129417 lin0909 Listeria innocua Clip11262 hypothetical protein NP_470249.1 939317 D 272626 CDS NP_470250.1 16799982 1129418 939712..940815 1 NC_003212.1 lin0910; hypothetical protein 940815 1129418 lin0910 Listeria innocua Clip11262 hypothetical protein NP_470250.1 939712 D 272626 CDS NP_470251.1 16799983 1129419 940917..941420 1 NC_003212.1 lin0911; hypothetical protein 941420 1129419 lin0911 Listeria innocua Clip11262 hypothetical protein NP_470251.1 940917 D 272626 CDS NP_470252.1 16799984 1129420 941535..942347 1 NC_003212.1 similar to transporters (formate); hypothetical protein 942347 1129420 lin0912 Listeria innocua Clip11262 hypothetical protein NP_470252.1 941535 D 272626 CDS NP_470253.1 16799985 1129421 942571..944037 1 NC_003212.1 similar to succinate semialdehyde dehydrogenase; hypothetical protein 944037 1129421 lin0913 Listeria innocua Clip11262 hypothetical protein NP_470253.1 942571 D 272626 CDS NP_470254.1 16799986 1129422 944179..944484 1 NC_003212.1 similar to PTS system, IIB component; hypothetical protein 944484 1129422 lin0914 Listeria innocua Clip11262 hypothetical protein NP_470254.1 944179 D 272626 CDS NP_470255.1 16799987 1129424 944489..944764 1 NC_003212.1 similar to phosphotransferase system enzyme IIC (truncated, N-terminal end); hypothetical protein 944764 1129424 lin0915 Listeria innocua Clip11262 hypothetical protein NP_470255.1 944489 D 272626 CDS NP_470256.1 16799988 1129426 945773..946123 1 NC_003212.1 similar to phosphotransferase system enzyme IIA; hypothetical protein 946123 1129426 lin0917 Listeria innocua Clip11262 hypothetical protein NP_470256.1 945773 D 272626 CDS NP_470257.1 16799989 1129427 946135..947586 1 NC_003212.1 similar to beta-glucosidase; hypothetical protein 947586 1129427 lin0918 Listeria innocua Clip11262 hypothetical protein NP_470257.1 946135 D 272626 CDS NP_470258.1 16799990 1129428 947659..949557 1 NC_003212.1 similar to transcription antiterminator BglG family; hypothetical protein 949557 1129428 lin0919 Listeria innocua Clip11262 hypothetical protein NP_470258.1 947659 D 272626 CDS NP_470259.1 16799991 1129429 949848..951419 1 NC_003212.1 similar to ABC transporter ATP-binding protein (antibiotic resistance); hypothetical protein 951419 1129429 lin0920 Listeria innocua Clip11262 hypothetical protein NP_470259.1 949848 D 272626 CDS NP_470260.1 16799992 1129430 951541..952581 1 NC_003212.1 similar to Bacillus subtilis YcgR protein; hypothetical protein 952581 1129430 lin0921 Listeria innocua Clip11262 hypothetical protein NP_470260.1 951541 D 272626 CDS NP_470261.1 16799993 1129431 952600..953439 1 NC_003212.1 similar to Bacillus subtilis YcgQ protein; hypothetical protein 953439 1129431 lin0922 Listeria innocua Clip11262 hypothetical protein NP_470261.1 952600 D 272626 CDS NP_470262.1 16799994 1129432 953528..954448 1 NC_003212.1 similar to pantothenate kinase; catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 954448 1129432 lin0923 Listeria innocua Clip11262 pantothenate kinase NP_470262.1 953528 D 272626 CDS NP_470263.1 16799995 1129433 954564..955286 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 955286 1129433 lin0924 Listeria innocua Clip11262 hypothetical protein NP_470263.1 954564 D 272626 CDS NP_470264.1 16799996 1129435 955286..956401 1 NC_003212.1 hypothetical protein 956401 1129435 lin0925 Listeria innocua Clip11262 hypothetical protein NP_470264.1 955286 D 272626 CDS NP_470265.1 16799997 1129436 956421..957077 1 NC_003212.1 similar to transcription regulator (TetR/AcrR family); hypothetical protein 957077 1129436 lin0926 Listeria innocua Clip11262 hypothetical protein NP_470265.1 956421 D 272626 CDS NP_470266.1 16799998 1129437 complement(957109..959070) 1 NC_003212.1 hypothetical protein 959070 1129437 lin0927 Listeria innocua Clip11262 hypothetical protein NP_470266.1 957109 R 272626 CDS NP_470267.1 16799999 1129438 959328..959951 1 NC_003212.1 similar to 3-methyladenine DNA glycosylase; responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 959951 1129438 lin0928 Listeria innocua Clip11262 3-methyladenine DNA glycosylase NP_470267.1 959328 D 272626 CDS NP_470268.1 16800000 1129439 960059..960727 1 NC_003212.1 similar to sortase; hypothetical protein 960727 1129439 lin0929 Listeria innocua Clip11262 hypothetical protein NP_470268.1 960059 D 272626 CDS NP_470269.1 16800001 1129440 960847..961578 1 NC_003212.1 conserved hypothetical protein, similar to Bacillus subtilis YhfI protein; hypothetical protein 961578 1129440 lin0930 Listeria innocua Clip11262 hypothetical protein NP_470269.1 960847 D 272626 CDS NP_470270.1 16800002 1129441 961603..962598 1 NC_003212.1 similar to lipoate protein ligase A; hypothetical protein 962598 1129441 lin0931 Listeria innocua Clip11262 hypothetical protein NP_470270.1 961603 D 272626 CDS NP_470271.1 16800003 1129442 complement(962633..963238) 1 NC_003212.1 hypothetical protein 963238 1129442 lin0932 Listeria innocua Clip11262 hypothetical protein NP_470271.1 962633 R 272626 CDS NP_470272.1 16800004 1129443 963627..964769 1 NC_003212.1 similar to Bacillus subtilis YhbA protein; hypothetical protein 964769 1129443 lin0933 Listeria innocua Clip11262 hypothetical protein NP_470272.1 963627 D 272626 CDS NP_470273.1 16800005 1129445 965312..966052 1 NC_003212.1 similar to Nitroflavin-reductase; hypothetical protein 966052 1129445 lin0935 Listeria innocua Clip11262 hypothetical protein NP_470273.1 965312 D 272626 CDS NP_470274.1 16800006 1129446 complement(966104..966265) 1 NC_003212.1 lin0936; hypothetical protein 966265 1129446 lin0936 Listeria innocua Clip11262 hypothetical protein NP_470274.1 966104 R 272626 CDS NP_470275.1 16800007 1129447 complement(966351..966809) 1 NC_003212.1 similar to protein-tyrosine-phosphatase; hypothetical protein 966809 1129447 lin0937 Listeria innocua Clip11262 hypothetical protein NP_470275.1 966351 R 272626 CDS NP_470276.1 16800008 1129448 complement(966822..967568) 1 NC_003212.1 lin0938; hypothetical protein 967568 1129448 lin0938 Listeria innocua Clip11262 hypothetical protein NP_470276.1 966822 R 272626 CDS NP_470277.1 16800009 1129449 complement(967659..968621) 1 NC_003212.1 lin0939; hypothetical protein 968621 1129449 lin0939 Listeria innocua Clip11262 hypothetical protein NP_470277.1 967659 R 272626 CDS NP_470278.1 16800010 1129451 complement(968742..970436) 1 NC_003212.1 similar to heat shock protein HtpG; HSP90 family protein 970436 1129451 lin0941 Listeria innocua Clip11262 HSP90 family protein NP_470278.1 968742 R 272626 CDS NP_470279.1 16800011 1129452 970638..971108 1 NC_003212.1 non-heme iron-binding ferritin 971108 fri 1129452 fri Listeria innocua Clip11262 non-heme iron-binding ferritin NP_470279.1 970638 D 272626 CDS NP_470280.1 16800012 1129453 971343..971645 1 NC_003212.1 similar to Bacillus subtilis YneR protein; hypothetical protein 971645 1129453 lin0943 Listeria innocua Clip11262 hypothetical protein NP_470280.1 971343 D 272626 CDS NP_470281.1 16800013 1129454 971760..972890 1 NC_003212.1 similar to C-terminal part of Bacillus subtilis ComEC protein and to ComEA; hypothetical protein 972890 1129454 lin0944 Listeria innocua Clip11262 hypothetical protein NP_470281.1 971760 D 272626 CDS NP_470282.1 16800014 1129455 972900..973127 1 NC_003212.1 lin0945; hypothetical protein 973127 1129455 lin0945 Listeria innocua Clip11262 hypothetical protein NP_470282.1 972900 D 272626 CDS NP_470283.1 16800015 1129456 complement(973326..974543) 1 NC_003212.1 hypothetical transport protein; hypothetical protein 974543 1129456 lin0946 Listeria innocua Clip11262 hypothetical protein NP_470283.1 973326 R 272626 CDS NP_470284.1 16800016 1129457 complement(974540..975229) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 975229 1129457 lin0947 Listeria innocua Clip11262 hypothetical protein NP_470284.1 974540 R 272626 CDS NP_470285.1 16800017 1129458 975351..976397 1 NC_003212.1 hypothetical protein 976397 1129458 lin0948 Listeria innocua Clip11262 hypothetical protein NP_470285.1 975351 D 272626 CDS NP_470286.1 16800018 1129459 complement(976407..977309) 1 NC_003212.1 lin0949; hypothetical protein 977309 1129459 lin0949 Listeria innocua Clip11262 hypothetical protein NP_470286.1 976407 R 272626 CDS NP_470287.1 16800019 1129460 complement(977329..978150) 1 NC_003212.1 lin0950; hypothetical protein 978150 1129460 lin0950 Listeria innocua Clip11262 hypothetical protein NP_470287.1 977329 R 272626 CDS NP_470288.1 16800020 1129461 978308..978766 1 NC_003212.1 lin0951; hypothetical protein 978766 1129461 lin0951 Listeria innocua Clip11262 hypothetical protein NP_470288.1 978308 D 272626 CDS NP_470289.1 16800021 1129462 978861..979085 1 NC_003212.1 lin0952; hypothetical protein 979085 1129462 lin0952 Listeria innocua Clip11262 hypothetical protein NP_470289.1 978861 D 272626 CDS NP_470290.1 16800022 1129463 979304..979618 1 NC_003212.1 lin0953; hypothetical protein 979618 1129463 lin0953 Listeria innocua Clip11262 hypothetical protein NP_470290.1 979304 D 272626 CDS NP_470291.1 16800023 1129464 979634..980479 1 NC_003212.1 lin0954; hypothetical protein 980479 1129464 lin0954 Listeria innocua Clip11262 hypothetical protein NP_470291.1 979634 D 272626 CDS NP_470292.1 16800024 1129465 980668..981801 1 NC_003212.1 similar to N-acetylglucosamine-6P-phosphate deacetylase (EC 3.5.1.25); hypothetical protein 981801 1129465 lin0955 Listeria innocua Clip11262 hypothetical protein NP_470292.1 980668 D 272626 CDS NP_470293.1 16800025 1129466 981817..982521 1 NC_003212.1 similar to glucosamine-6-Phoasphate isomerase (EC 5.3.1.10); hypothetical protein 982521 1129466 lin0956 Listeria innocua Clip11262 hypothetical protein NP_470293.1 981817 D 272626 CDS NP_470294.1 16800026 1129467 982537..983259 1 NC_003212.1 similar to transcription regulator (GntR family); hypothetical protein 983259 1129467 lin0957 Listeria innocua Clip11262 hypothetical protein NP_470294.1 982537 D 272626 CDS NP_470295.1 16800027 1129468 983394..984449 1 NC_003212.1 similar to undacaprenyl-phosphate N-acetylglucosaminyltransferase; hypothetical protein 984449 1129468 lin0958 Listeria innocua Clip11262 hypothetical protein NP_470295.1 983394 D 272626 CDS NP_470296.1 16800028 1129469 984563..985471 1 NC_003212.1 similar to proteases; hypothetical protein 985471 1129469 lin0959 Listeria innocua Clip11262 hypothetical protein NP_470296.1 984563 D 272626 CDS NP_470297.1 16800029 1129470 985485..986711 1 NC_003212.1 similar to proteases; hypothetical protein 986711 1129470 lin0960 Listeria innocua Clip11262 hypothetical protein NP_470297.1 985485 D 272626 CDS NP_470298.1 16800030 1129471 986794..987351 1 NC_003212.1 epitope LemA 987351 lemA 1129471 lemA Listeria innocua Clip11262 epitope LemA NP_470298.1 986794 D 272626 CDS NP_470299.1 16800031 1129472 987374..988288 1 NC_003212.1 similar to putative heat shock protein HtpX, Listeria epitope LemB; putative metalloprotease; heat shock protein HtpX 988288 1129472 lin0962 Listeria innocua Clip11262 heat shock protein HtpX NP_470299.1 987374 D 272626 CDS NP_470300.1 16800032 1129473 complement(988329..989147) 1 NC_003212.1 similar to Bacillus subtilis YjbH protein; hypothetical protein 989147 1129473 lin0963 Listeria innocua Clip11262 hypothetical protein NP_470300.1 988329 R 272626 CDS NP_470301.1 16800033 1129474 complement(989393..989977) 1 NC_003212.1 similar to Bacillus subtilis YjbK protein; hypothetical protein 989977 1129474 lin0964 Listeria innocua Clip11262 hypothetical protein NP_470301.1 989393 R 272626 CDS NP_470302.1 16800034 1129475 complement(989994..990461) 1 NC_003212.1 lin0965; hypothetical protein 990461 1129475 lin0965 Listeria innocua Clip11262 hypothetical protein NP_470302.1 989994 R 272626 CDS NP_470303.1 16800035 1129476 990620..991288 1 NC_003212.1 similar to Bacillus subtilis YjbM protein; hypothetical protein 991288 1129476 lin0966 Listeria innocua Clip11262 hypothetical protein NP_470303.1 990620 D 272626 CDS NP_470304.1 16800036 1129477 991320..992114 1 NC_003212.1 Probable inorganic polyphosphate/ATP-NAD kinase 1; catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 992114 ppnK 1129477 ppnK Listeria innocua Clip11262 inorganic polyphosphate/ATP-NAD kinase NP_470304.1 991320 D 272626 CDS NP_470305.1 16800037 1129478 992133..993023 1 NC_003212.1 similar to ribosomal large subunit pseudouridine synthetase; hypothetical protein 993023 1129478 lin0968 Listeria innocua Clip11262 hypothetical protein NP_470305.1 992133 D 272626 CDS NP_470306.1 16800038 1129479 993101..993889 1 NC_003212.1 similar to enoyl- acyl-carrier protein reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 993889 1129479 lin0969 Listeria innocua Clip11262 enoyl-(acyl carrier protein) reductase NP_470306.1 993101 D 272626 CDS NP_470307.1 16800039 1129480 complement(993921..995195) 1 NC_003212.1 DltD protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid 995195 dltD 1129480 dltD Listeria innocua Clip11262 DltD protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid NP_470307.1 993921 R 272626 CDS NP_470308.1 16800040 1129481 complement(995195..995431) 1 NC_003212.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 995431 dltC 1129481 dltC Listeria innocua Clip11262 D-alanine--poly(phosphoribitol) ligase subunit 2 NP_470308.1 995195 R 272626 CDS NP_470309.1 16800041 1129483 complement(995456..996640) 1 NC_003212.1 DltB protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid 996640 dltB 1129483 dltB Listeria innocua Clip11262 DltB protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid NP_470309.1 995456 R 272626 CDS NP_470310.1 16800042 1129484 complement(996637..998169) 1 NC_003212.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 998169 dltA 1129484 dltA Listeria innocua Clip11262 D-alanine--poly(phosphoribitol) ligase subunit 1 NP_470310.1 996637 R 272626 CDS NP_470311.1 16800043 1129486 998561..999235 1 NC_003212.1 similar to ribose 5-phosphate isomerase; Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 999235 1129486 lin0974 Listeria innocua Clip11262 ribose-5-phosphate isomerase A NP_470311.1 998561 D 272626 CDS NP_470312.1 16800044 1129487 complement(999271..999708) 1 NC_003212.1 similar to Bacillus subtilis YjcF protein; hypothetical protein 999708 1129487 lin0975 Listeria innocua Clip11262 hypothetical protein NP_470312.1 999271 R 272626 CDS NP_470313.1 16800045 1129488 complement(999725..1000474) 1 NC_003212.1 similar to Bacillus subtilis YjcH protein; hypothetical protein 1000474 1129488 lin0976 Listeria innocua Clip11262 hypothetical protein NP_470313.1 999725 R 272626 CDS NP_470314.1 16800046 1129489 1000693..1001712 1 NC_003212.1 similar to branched-chain amino acid aminotransferase; catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1001712 1129489 lin0977 Listeria innocua Clip11262 branched-chain amino acid aminotransferase NP_470314.1 1000693 D 272626 CDS NP_470315.1 16800047 1129490 1001906..1002670 1 NC_003212.1 similar to daunorubicin resistance ATP-binding proteins; hypothetical protein 1002670 1129490 lin0978 Listeria innocua Clip11262 hypothetical protein NP_470315.1 1001906 D 272626 CDS NP_470316.1 16800048 1129492 1002667..1003419 1 NC_003212.1 similar to ABC transporter transmembrane component; hypothetical protein 1003419 1129492 lin0979 Listeria innocua Clip11262 hypothetical protein NP_470316.1 1002667 D 272626 CDS NP_470317.1 16800049 1129493 complement(1003456..1004931) 1 NC_003212.1 similar to efflux transporter; hypothetical protein 1004931 1129493 lin0980 Listeria innocua Clip11262 hypothetical protein NP_470317.1 1003456 R 272626 CDS NP_470318.1 16800050 1129494 1005071..1006123 1 NC_003212.1 similar to glucanase and peptidase; hypothetical protein 1006123 1129494 lin0981 Listeria innocua Clip11262 hypothetical protein NP_470318.1 1005071 D 272626 CDS NP_470319.1 16800051 1129495 1006136..1006612 1 NC_003212.1 similar to glutathione peroxidase; hypothetical protein 1006612 1129495 lin0982 Listeria innocua Clip11262 hypothetical protein NP_470319.1 1006136 D 272626 CDS NP_470320.1 16800052 1129496 1006749..1007204 1 NC_003212.1 weakly similar to two-component response regulator; hypothetical protein 1007204 1129496 lin0983 Listeria innocua Clip11262 hypothetical protein NP_470320.1 1006749 D 272626 CDS NP_470321.1 16800053 1129498 1007201..1007629 1 NC_003212.1 lin0984; hypothetical protein 1007629 1129498 lin0984 Listeria innocua Clip11262 hypothetical protein NP_470321.1 1007201 D 272626 CDS NP_470322.1 16800054 1129500 1007626..1008537 1 NC_003212.1 similar to antibiotic ABC transporter, ATP-binding protein; hypothetical protein 1008537 1129500 lin0985 Listeria innocua Clip11262 hypothetical protein NP_470322.1 1007626 D 272626 CDS NP_470323.1 16800055 1129502 1008530..1009384 1 NC_003212.1 similar to Streptococcus agalactiae CylB protein; hypothetical protein 1009384 1129502 lin0986 Listeria innocua Clip11262 hypothetical protein NP_470323.1 1008530 D 272626 CDS NP_470324.1 16800056 1129503 1009466..1011034 1 NC_003212.1 similar to peptide chain release factor 3 (RF-3); stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1011034 prfC 1129503 prfC Listeria innocua Clip11262 peptide chain release factor 3 NP_470324.1 1009466 D 272626 CDS NP_470325.1 16800057 1129504 1011144..1011569 1 NC_003212.1 similar to regulatory proteins (MarR family); hypothetical protein 1011569 1129504 lin0988 Listeria innocua Clip11262 hypothetical protein NP_470325.1 1011144 D 272626 CDS NP_470326.1 16800058 1129505 1011622..1012983 1 NC_003212.1 hypothetical protein 1012983 1129505 lin0989 Listeria innocua Clip11262 hypothetical protein NP_470326.1 1011622 D 272626 CDS NP_470327.1 16800059 1129506 1013264..1014031 1 NC_003212.1 hypothetical protein 1014031 1129506 lin0990 Listeria innocua Clip11262 hypothetical protein NP_470327.1 1013264 D 272626 CDS NP_470328.1 16800060 1129507 1014136..1014903 1 NC_003212.1 hypothetical protein 1014903 1129507 lin0991 Listeria innocua Clip11262 hypothetical protein NP_470328.1 1014136 D 272626 CDS NP_470329.1 16800061 1129508 1014944..1016281 1 NC_003212.1 similar to Na+-transporting ATP synthase subunit J; hypothetical protein 1016281 1129508 lin0992 Listeria innocua Clip11262 hypothetical protein NP_470329.1 1014944 D 272626 CDS NP_470330.1 16800062 1129509 complement(1016363..1016731) 1 NC_003212.1 lin0993; hypothetical protein 1016731 1129509 lin0993 Listeria innocua Clip11262 hypothetical protein NP_470330.1 1016363 R 272626 CDS NP_470331.1 16800063 1129510 complement(1016761..1017792) 1 NC_003212.1 similar to Bacillus subtilis YkrP protein; hypothetical protein 1017792 1129510 lin0994 Listeria innocua Clip11262 hypothetical protein NP_470331.1 1016761 R 272626 CDS NP_470332.1 16800064 1129511 1017980..1018459 1 NC_003212.1 similar to methylated-DNA-protein-cystein methyltransferase; hypothetical protein 1018459 1129511 lin0995 Listeria innocua Clip11262 hypothetical protein NP_470332.1 1017980 D 272626 CDS NP_470333.1 16800065 1129512 complement(1018475..1020649) 1 NC_003212.1 ATP-dependent protease 1020649 clpE 1129512 clpE Listeria innocua Clip11262 ATP-dependent protease NP_470333.1 1018475 R 272626 CDS NP_470334.1 16800066 1129513 complement(1020813..1021424) 1 NC_003212.1 similar to hypothetical protein; hypothetical protein 1021424 1129513 lin0997 Listeria innocua Clip11262 hypothetical protein NP_470334.1 1020813 R 272626 CDS NP_470335.1 16800067 1129514 1021569..1022360 1 NC_003212.1 lin0998; hypothetical protein 1022360 1129514 lin0998 Listeria innocua Clip11262 hypothetical protein NP_470335.1 1021569 D 272626 CDS NP_470336.1 16800068 1129515 complement(1022373..1023839) 1 NC_003212.1 similar to phytoene dehydrogenase; hypothetical protein 1023839 1129515 lin0999 Listeria innocua Clip11262 hypothetical protein NP_470336.1 1022373 R 272626 CDS NP_470337.1 16800069 1129516 complement(1023943..1024212) 1 NC_003212.1 similar to Bacillus subtilis protein YkvS; hypothetical protein 1024212 1129516 lin1000 Listeria innocua Clip11262 hypothetical protein NP_470337.1 1023943 R 272626 CDS NP_470338.1 16800070 1129517 1024521..1024787 1 NC_003212.1 phosphocarrier protein HPr 1024787 ptsH 1129517 ptsH Listeria innocua Clip11262 phosphocarrier protein HPr NP_470338.1 1024521 D 272626 CDS NP_470339.1 16800071 1129519 1024787..1026505 1 NC_003212.1 phosphotransferase system enzyme I 1026505 1129519 lin1002 Listeria innocua Clip11262 phosphotransferase system enzyme I NP_470339.1 1024787 D 272626 CDS NP_470340.1 16800072 1129520 1026618..1027652 1 NC_003212.1 hypothetical protein 1027652 1129520 lin1003 Listeria innocua Clip11262 hypothetical protein NP_470340.1 1026618 D 272626 CDS NP_470341.1 16800073 1129521 1027665..1028525 1 NC_003212.1 similar to 3-hydroxyisobutyrate dehydrogenase (Bacillus subtilis YkwC protein); hypothetical protein 1028525 1129521 lin1004 Listeria innocua Clip11262 hypothetical protein NP_470341.1 1027665 D 272626 CDS NP_470342.1 16800074 1129522 complement(1028563..1029708) 1 NC_003212.1 similar to aminotransferases (to Bacillus subtilis PatA protein); hypothetical protein 1029708 1129522 lin1005 Listeria innocua Clip11262 hypothetical protein NP_470342.1 1028563 R 272626 CDS NP_470343.1 16800075 1129523 1029928..1030149 1 NC_003212.1 lin1006; hypothetical protein 1030149 1129523 lin1006 Listeria innocua Clip11262 hypothetical protein NP_470343.1 1029928 D 272626 CDS NP_470344.1 16800076 1129524 1030462..1030695 1 NC_003212.1 similar to Bacillus subtilis YkuJ protein; hypothetical protein 1030695 1129524 lin1007 Listeria innocua Clip11262 hypothetical protein NP_470344.1 1030462 D 272626 CDS NP_470345.1 16800077 1129525 1030912..1031364 1 NC_003212.1 similar to Bacillus subtilis YkuL protein; hypothetical protein 1031364 1129525 lin1008 Listeria innocua Clip11262 hypothetical protein NP_470345.1 1030912 D 272626 CDS NP_470346.1 16800078 1129527 1031361..1032239 1 NC_003212.1 similar to transcription regulator (LysR family).; hypothetical protein 1032239 1129527 lin1009 Listeria innocua Clip11262 hypothetical protein NP_470346.1 1031361 D 272626 CDS NP_470347.1 16800079 1129528 1032287..1032997 1 NC_003212.1 similar to tetrahydrodipicolinate succinylase; hypothetical protein 1032997 1129528 lin1010 Listeria innocua Clip11262 hypothetical protein NP_470347.1 1032287 D 272626 CDS NP_470348.1 16800080 1129529 1033060..1034175 1 NC_003212.1 similar to N-acyl-L-amino acid amidohydrolases; hypothetical protein 1034175 1129529 lin1011 Listeria innocua Clip11262 hypothetical protein NP_470348.1 1033060 D 272626 CDS NP_470349.1 16800081 1129530 complement(1034220..1035065) 1 NC_003212.1 similar to conserved hypothetical proteins like to Bacillus subtilis YkuT protein; hypothetical protein 1035065 1129530 lin1012 Listeria innocua Clip11262 hypothetical protein NP_470349.1 1034220 R 272626 CDS NP_470350.1 16800082 1129531 1035436..1036629 1 NC_003212.1 highly similar to glycine betaine ABC transporter (ATP-binding protein); hypothetical protein 1036629 1129531 lin1013 Listeria innocua Clip11262 hypothetical protein NP_470350.1 1035436 D 272626 CDS NP_470351.1 16800083 1129533 1036622..1037470 1 NC_003212.1 highly similar to glycine betaine ABC transporters (permease); hypothetical protein 1037470 1129533 lin1014 Listeria innocua Clip11262 hypothetical protein NP_470351.1 1036622 D 272626 CDS NP_470352.1 16800084 1129534 1037484..1038386 1 NC_003212.1 highly similar to glycine betaine ABC transporters (glycine betaine-binding protein); hypothetical protein 1038386 1129534 lin1015 Listeria innocua Clip11262 hypothetical protein NP_470352.1 1037484 D 272626 CDS NP_470353.1 16800085 1129535 1038501..1038992 1 NC_003212.1 similar to phosphotransferase system glucose-specific enzyme IIA; hypothetical protein 1038992 1129535 lin1016 Listeria innocua Clip11262 hypothetical protein NP_470353.1 1038501 D 272626 CDS NP_470354.1 16800086 1129536 1039105..1039800 1 NC_003212.1 similar to Escherichia coli copper homeostasis protein CutC; hypothetical protein 1039800 1129536 lin1017 Listeria innocua Clip11262 hypothetical protein NP_470354.1 1039105 D 272626 CDS NP_470355.1 16800087 1129537 1039880..1040752 1 NC_003212.1 similar to Bacillus subtilis YitL protein; hypothetical protein 1040752 1129537 lin1018 Listeria innocua Clip11262 hypothetical protein NP_470355.1 1039880 D 272626 CDS NP_470356.1 16800088 1129538 1040888..1041601 1 NC_003212.1 similar to Bacillus subtilis YvqF protein; hypothetical protein 1041601 1129538 lin1019 Listeria innocua Clip11262 hypothetical protein NP_470356.1 1040888 D 272626 CDS NP_470357.1 16800089 1129539 1041598..1042656 1 NC_003212.1 similar to two-component sensor histidine kinase in particular Bacillus subtilis YvqE protein; hypothetical protein 1042656 1129539 lin1020 Listeria innocua Clip11262 hypothetical protein NP_470357.1 1041598 D 272626 CDS NP_470358.1 16800090 1129541 1042653..1043291 1 NC_003212.1 similar to two-component response regulator, in particular Bacillus subtilis YvqC protein; hypothetical protein 1043291 1129541 lin1021 Listeria innocua Clip11262 hypothetical protein NP_470358.1 1042653 D 272626 CDS NP_470359.1 16800091 1129542 1043310..1043969 1 NC_003212.1 similar to a bacterial K(+)-uptake system; hypothetical protein 1043969 1129542 lin1022 Listeria innocua Clip11262 hypothetical protein NP_470359.1 1043310 D 272626 CDS NP_470360.1 16800092 1129543 1044114..1045034 1 NC_003212.1 lin1023; hypothetical protein 1045034 1129543 lin1023 Listeria innocua Clip11262 hypothetical protein NP_470360.1 1044114 D 272626 CDS NP_470361.1 16800093 1129544 1045031..1045882 1 NC_003212.1 lin1024; hypothetical protein 1045882 1129544 lin1024 Listeria innocua Clip11262 hypothetical protein NP_470361.1 1045031 D 272626 CDS NP_470362.1 16800094 1129545 complement(1045926..1046891) 1 NC_003212.1 similar to Bacillus subtilis LytR protein; hypothetical protein 1046891 1129545 lin1025 Listeria innocua Clip11262 hypothetical protein NP_470362.1 1045926 R 272626 CDS NP_470363.1 16800095 1129546 complement(1047000..1048667) 1 NC_003212.1 similar to conserved hypothetical proteins (in particular Bacillus subtilis YkqC); hypothetical protein 1048667 1129546 lin1026 Listeria innocua Clip11262 hypothetical protein NP_470363.1 1047000 R 272626 CDS NP_470364.1 16800096 1129547 complement(1048674..1048883) 1 NC_003212.1 similar to Bacillus subtilis YkzG protein; hypothetical protein 1048883 1129547 lin1027 Listeria innocua Clip11262 hypothetical protein NP_470364.1 1048674 R 272626 CDS NP_470365.1 16800097 1129549 1049378..1050148 1 NC_003212.1 hypothetical protein 1050148 1129549 lin1028 Listeria innocua Clip11262 hypothetical protein NP_470365.1 1049378 D 272626 CDS NP_470366.1 16800098 1129550 complement(1050165..1050968) 1 NC_003212.1 highly similar to Bacillus subtilis YoaT protein; hypothetical protein 1050968 1129550 lin1029 Listeria innocua Clip11262 hypothetical protein NP_470366.1 1050165 R 272626 CDS NP_470367.1 16800099 1129551 complement(1051035..1051616) 1 NC_003212.1 weakly similar to molybdopterin-guanine dinucleotide biosynthesis protein A; hypothetical protein 1051616 1129551 lin1030 Listeria innocua Clip11262 hypothetical protein NP_470367.1 1051035 R 272626 CDS NP_470368.1 16800100 1129552 complement(1051597..1052259) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 1052259 1129552 lin1031 Listeria innocua Clip11262 hypothetical protein NP_470368.1 1051597 R 272626 CDS NP_470369.1 16800101 1129554 complement(1052262..1052933) 1 NC_003212.1 similar to molybdenum ABC transporters (permease); hypothetical protein 1052933 1129554 lin1032 Listeria innocua Clip11262 hypothetical protein NP_470369.1 1052262 R 272626 CDS NP_470370.1 16800102 1129556 1053041..1053814 1 NC_003212.1 similar to molybdate ABC transporter binding protein; hypothetical protein 1053814 1129556 lin1033 Listeria innocua Clip11262 hypothetical protein NP_470370.1 1053041 D 272626 CDS NP_470371.1 16800103 1129557 1053909..1055132 1 NC_003212.1 similar to molybdopterin biosynthesis protein moeA; hypothetical protein 1055132 1129557 lin1034 Listeria innocua Clip11262 hypothetical protein NP_470371.1 1053909 D 272626 CDS NP_470372.1 16800104 1129559 1055111..1055596 1 NC_003212.1 similar to molybdopterin-guanine dinucleotide biosynthesis MobB; hypothetical protein 1055596 1129559 lin1035 Listeria innocua Clip11262 hypothetical protein NP_470372.1 1055111 D 272626 CDS NP_470373.1 16800105 1129561 1055593..1056015 1 NC_003212.1 similar to molybdopterin converting factor, subunit 2; hypothetical protein 1056015 1129561 lin1036 Listeria innocua Clip11262 hypothetical protein NP_470373.1 1055593 D 272626 CDS NP_470374.1 16800106 1129562 1055999..1056247 1 NC_003212.1 similar to molybdopterin converting factor (subunit 1).; hypothetical protein 1056247 1129562 lin1037 Listeria innocua Clip11262 hypothetical protein NP_470374.1 1055999 D 272626 CDS NP_470375.1 16800107 1129563 1056260..1056742 1 NC_003212.1 similar to molybdenum cofactor biosynthesis protein C; MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1056742 moaC 1129563 moaC Listeria innocua Clip11262 molybdenum cofactor biosynthesis protein MoaC NP_470375.1 1056260 D 272626 CDS NP_470376.1 16800108 1129564 1056771..1057772 1 NC_003212.1 similar to molybdenum cofactor biosynthesis protein A; together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1057772 moaA 1129564 moaA Listeria innocua Clip11262 molybdenum cofactor biosynthesis protein A NP_470376.1 1056771 D 272626 CDS NP_470377.1 16800109 1129565 complement(1057805..1058293) 1 NC_003212.1 similar to molybdenum cofactor biosynthesis protein B; hypothetical protein 1058293 1129565 lin1040 Listeria innocua Clip11262 hypothetical protein NP_470377.1 1057805 R 272626 CDS NP_470378.1 16800110 1129566 complement(1058305..1059303) 1 NC_003212.1 similar to molybdopterin biosynthesis protein MoeB; hypothetical protein 1059303 1129566 lin1041 Listeria innocua Clip11262 hypothetical protein NP_470378.1 1058305 R 272626 CDS NP_470379.1 16800111 1129567 1059440..1059991 1 NC_003212.1 similar to Bacillus subtilis YdfE protein; hypothetical protein 1059991 1129567 lin1042 Listeria innocua Clip11262 hypothetical protein NP_470379.1 1059440 D 272626 CDS NP_470380.1 16800112 1129568 complement(1060038..1060589) 1 NC_003212.1 similar to formylmethionine deformylase and to Bacillus subtilis YkrB protein; cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1060589 def 1129568 def Listeria innocua Clip11262 peptide deformylase NP_470380.1 1060038 R 272626 CDS NP_470381.1 16800113 1129569 1061423..1062538 1 NC_003212.1 highly similar to pyruvate dehydrogenase (E1 alpha subunit); hypothetical protein 1062538 1129569 lin1044 Listeria innocua Clip11262 hypothetical protein NP_470381.1 1061423 D 272626 CDS NP_470382.1 16800114 1129571 1062541..1063518 1 NC_003212.1 highly similar to pyruvate dehydrogenase (E1 beta subunit); hypothetical protein 1063518 1129571 lin1045 Listeria innocua Clip11262 hypothetical protein NP_470382.1 1062541 D 272626 CDS NP_470383.1 16800115 1129572 1063629..1065263 1 NC_003212.1 highly similar to pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit); Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase 1065263 1129572 lin1046 Listeria innocua Clip11262 dihydrolipoamide acetyltransferase NP_470383.1 1063629 D 272626 CDS NP_470384.1 16800116 1129574 1065268..1066671 1 NC_003212.1 highly similar to dihydrolipoamide dehydrogenase, E3 subunit of pyruvate dehydrogenase complex; E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1066671 1129574 lin1047 Listeria innocua Clip11262 dihydrolipoamide dehydrogenase NP_470384.1 1065268 D 272626 CDS NP_470385.1 16800117 1129575 1066858..1067169 1 NC_003212.1 lin1048; hypothetical protein 1067169 1129575 lin1048 Listeria innocua Clip11262 hypothetical protein NP_470385.1 1066858 D 272626 CDS NP_470386.1 16800118 1129576 1067298..1068248 1 NC_003212.1 similar to L-lactate dehydrogenase; hypothetical protein 1068248 1129576 lin1049 Listeria innocua Clip11262 hypothetical protein NP_470386.1 1067298 D 272626 CDS NP_470387.1 16800119 1129577 1068248..1068520 1 NC_003212.1 similar to Bacillus subtilis YktA protein; hypothetical protein 1068520 1129577 lin1050 Listeria innocua Clip11262 hypothetical protein NP_470387.1 1068248 D 272626 CDS NP_470388.1 16800120 1129578 1068541..1069071 1 NC_003212.1 lin1051; hypothetical protein 1069071 1129578 lin1051 Listeria innocua Clip11262 hypothetical protein NP_470388.1 1068541 D 272626 CDS NP_470389.1 16800121 1129579 complement(1069122..1070066) 1 NC_003212.1 similar to membrane and transport proteins; hypothetical protein 1070066 1129579 lin1052 Listeria innocua Clip11262 hypothetical protein NP_470389.1 1069122 R 272626 CDS NP_470390.1 16800122 1129580 complement(1070267..1070881) 1 NC_003212.1 similar to Bacillus subtilis YktB protein; hypothetical protein 1070881 1129580 lin1053 Listeria innocua Clip11262 hypothetical protein NP_470390.1 1070267 R 272626 CDS NP_470391.1 16800123 1129581 1071013..1071786 1 NC_003212.1 similar to extragenic suppressor protein SuhB and to myo-inositol-1(or 4)-monophosphatase; hypothetical protein 1071786 1129581 lin1054 Listeria innocua Clip11262 hypothetical protein NP_470391.1 1071013 D 272626 CDS NP_470392.1 16800124 1129582 1071978..1073816 1 NC_003212.1 similar to GTP-binding elongation factor; hypothetical protein 1073816 1129582 lin1055 Listeria innocua Clip11262 hypothetical protein NP_470392.1 1071978 D 272626 CDS NP_470393.1 16800125 1129583 1073998..1074867 1 NC_003212.1 lin1056; hypothetical protein 1074867 1129583 lin1056 Listeria innocua Clip11262 hypothetical protein NP_470393.1 1073998 D 272626 CDS NP_470394.1 16800126 1129584 complement(1074900..1075130) 1 NC_003212.1 similar to Bacillus subtilis YlaI protein; hypothetical protein 1075130 1129584 lin1057 Listeria innocua Clip11262 hypothetical protein NP_470394.1 1074900 R 272626 CDS NP_470395.1 16800127 1129585 1075336..1075617 1 NC_003212.1 similar to Bacillus subtilis YlaN protein; depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein; hypothetical protein 1075617 1129585 lin1058 Listeria innocua Clip11262 hypothetical protein NP_470395.1 1075336 D 272626 CDS NP_470396.1 16800128 1129586 1075790..1076992 1 NC_003212.1 similar to cell-division protein RodA and FtsW; hypothetical protein 1076992 1129586 lin1059 Listeria innocua Clip11262 hypothetical protein NP_470396.1 1075790 D 272626 CDS NP_470397.1 16800129 1129587 1077267..1080707 1 NC_003212.1 highly similar to pyruvate carboxylase; biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1080707 1129587 lin1060 Listeria innocua Clip11262 pyruvate carboxylase NP_470397.1 1077267 D 272626 CDS NP_470398.1 16800130 1129588 1080860..1081753 1 NC_003212.1 similar to metal binding protein (ABC transporter); hypothetical protein 1081753 1129588 lin1061 Listeria innocua Clip11262 hypothetical protein NP_470398.1 1080860 D 272626 CDS NP_470399.1 16800131 1129589 1082035..1082838 1 NC_003212.1 highly similar to teichoic acid translocation permease protein TagG; hypothetical protein 1082838 1129589 lin1062 Listeria innocua Clip11262 hypothetical protein NP_470399.1 1082035 D 272626 CDS NP_470400.1 16800132 1129590 1082851..1083858 1 NC_003212.1 similar to teichoic acid translocation ATP-binding protein TagH (ABC transporter); hypothetical protein 1083858 1129590 lin1063 Listeria innocua Clip11262 hypothetical protein NP_470400.1 1082851 D 272626 CDS NP_470401.1 16800133 1129591 1084046..1086370 1 NC_003212.1 similar to autolysin (amidase); hypothetical protein 1086370 1129591 lin1064 Listeria innocua Clip11262 hypothetical protein NP_470401.1 1084046 D 272626 CDS NP_470402.1 16800134 1129592 complement(1086423..1088429) 1 NC_003212.1 lin1065; hypothetical protein 1088429 1129592 lin1065 Listeria innocua Clip11262 hypothetical protein NP_470402.1 1086423 R 272626 CDS NP_470403.1 16800135 1129593 1088674..1089663 1 NC_003212.1 similar to dolichol phosphate mannose synthase; hypothetical protein 1089663 1129593 lin1066 Listeria innocua Clip11262 hypothetical protein NP_470403.1 1088674 D 272626 CDS NP_470404.1 16800136 1129594 1089669..1091759 1 NC_003212.1 lin1067; hypothetical protein 1091759 1129594 lin1067 Listeria innocua Clip11262 hypothetical protein NP_470404.1 1089669 D 272626 CDS NP_470405.1 16800137 1129595 1091847..1094171 1 NC_003212.1 similar to hypothetical protein 3 (capsulation locus) of Haemophilus influenzae; hypothetical protein 1094171 1129595 lin1068 Listeria innocua Clip11262 hypothetical protein NP_470405.1 1091847 D 272626 CDS NP_470406.1 16800138 1129597 1094168..1095178 1 NC_003212.1 lin1069; hypothetical protein 1095178 1129597 lin1069 Listeria innocua Clip11262 hypothetical protein NP_470406.1 1094168 D 272626 CDS NP_470407.1 16800139 1129598 complement(1095229..1096116) 1 NC_003212.1 similar to putative UDP-glucose pyrophosphorylases; hypothetical protein 1096116 1129598 lin1070 Listeria innocua Clip11262 hypothetical protein NP_470407.1 1095229 R 272626 CDS NP_470408.1 16800140 1129599 1096342..1097055 1 NC_003212.1 similar to CDP-ribitol pyrophosphorylase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1097055 ispD 1129599 ispD Listeria innocua Clip11262 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NP_470408.1 1096342 D 272626 CDS NP_470409.1 16800141 1129600 1097048..1098073 1 NC_003212.1 similar to glucitol dehydrogenase; hypothetical protein 1098073 1129600 lin1072 Listeria innocua Clip11262 hypothetical protein NP_470409.1 1097048 D 272626 CDS NP_470410.1 16800142 1129601 1098214..1099602 1 NC_003212.1 similar to galactosamine-containing minor teichoic acid biosynthesis protein GgaA; hypothetical protein 1099602 1129601 lin1073 Listeria innocua Clip11262 hypothetical protein NP_470410.1 1098214 D 272626 CDS NP_470411.1 16800143 1129603 1099602..1100756 1 NC_003212.1 similar to Bacillus subtilis TagF protein (probable CDPglycerol glycerophosphotransferase); hypothetical protein 1100756 1129603 lin1074 Listeria innocua Clip11262 hypothetical protein NP_470411.1 1099602 D 272626 CDS NP_470412.1 16800144 1129604 1100769..1101920 1 NC_003212.1 similar to teichoic acid biosynthesis protein B precursor; hypothetical protein 1101920 1129604 lin1075 Listeria innocua Clip11262 hypothetical protein NP_470412.1 1100769 D 272626 CDS NP_470413.1 16800145 1129605 1101985..1102368 1 NC_003212.1 highly similar to glycerol-3-phosphate cytidylyltransferase (gct), CDP-glycerol pyrophosphorylase (teichoic acid biosynthesis protein D); hypothetical protein 1102368 1129605 lin1076 Listeria innocua Clip11262 hypothetical protein NP_470413.1 1101985 D 272626 CDS NP_470414.1 16800146 1129606 1102486..1103976 1 NC_003212.1 conserved hypothetical protein, similar to Bacillus subtilis YueK protein; catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1103976 1129606 lin1077 Listeria innocua Clip11262 nicotinate phosphoribosyltransferase NP_470414.1 1102486 D 272626 CDS NP_470415.1 16800147 1129607 1103988..1104812 1 NC_003212.1 similar to NH(3)-dependent NAD(+) synthetases, nitrogen regulatory protein; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1104812 nadE 1129607 nadE Listeria innocua Clip11262 NAD synthetase NP_470415.1 1103988 D 272626 CDS NP_470416.1 16800148 1129608 1104825..1105133 1 NC_003212.1 lin1079; hypothetical protein 1105133 1129608 lin1079 Listeria innocua Clip11262 hypothetical protein NP_470416.1 1104825 D 272626 CDS NP_470417.1 16800149 1129609 1105194..1105598 1 NC_003212.1 similar to PTS system, cellobiose-specific IIB component (cel A); hypothetical protein 1105598 1129609 lin1080 Listeria innocua Clip11262 hypothetical protein NP_470417.1 1105194 D 272626 CDS NP_470418.1 16800150 1129610 1105727..1107283 1 NC_003212.1 highly similar to GMP synthetase; contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1107283 guaA 1129610 guaA Listeria innocua Clip11262 GMP synthase NP_470418.1 1105727 D 272626 CDS NP_470419.1 16800151 1129611 1107430..1108593 1 NC_003212.1 lin1082; hypothetical protein 1108593 1129611 lin1082 Listeria innocua Clip11262 hypothetical protein NP_470419.1 1107430 D 272626 CDS NP_470420.1 16800152 1129612 1108735..1109385 1 NC_003212.1 lin1083; hypothetical protein 1109385 1129612 lin1083 Listeria innocua Clip11262 hypothetical protein NP_470420.1 1108735 D 272626 CDS NP_470421.1 16800153 1129613 1109683..1109967 1 NC_003212.1 lin1084; hypothetical protein 1109967 1129613 lin1084 Listeria innocua Clip11262 hypothetical protein NP_470421.1 1109683 D 272626 CDS NP_470422.1 16800154 1129615 1109968..1110324 1 NC_003212.1 lin1085; hypothetical protein 1110324 1129615 lin1085 Listeria innocua Clip11262 hypothetical protein NP_470422.1 1109968 D 272626 CDS NP_470423.1 16800155 1129617 1110321..1111718 1 NC_003212.1 lin1086; hypothetical protein 1111718 1129617 lin1086 Listeria innocua Clip11262 hypothetical protein NP_470423.1 1110321 D 272626 CDS NP_470424.1 16800156 1129618 1111731..1112150 1 NC_003212.1 lin1087; hypothetical protein 1112150 1129618 lin1087 Listeria innocua Clip11262 hypothetical protein NP_470424.1 1111731 D 272626 CDS NP_470425.1 16800157 1129619 1112236..1112709 1 NC_003212.1 lin1088; hypothetical protein 1112709 1129619 lin1088 Listeria innocua Clip11262 hypothetical protein NP_470425.1 1112236 D 272626 CDS NP_470426.1 16800158 1129621 1112699..1113136 1 NC_003212.1 lin1089; hypothetical protein 1113136 1129621 lin1089 Listeria innocua Clip11262 hypothetical protein NP_470426.1 1112699 D 272626 CDS NP_470427.1 16800159 1129622 1113540..1113875 1 NC_003212.1 lin1090; hypothetical protein 1113875 1129622 lin1090 Listeria innocua Clip11262 hypothetical protein NP_470427.1 1113540 D 272626 CDS NP_470428.1 16800160 1129623 1114077..1114379 1 NC_003212.1 lin1091; hypothetical protein 1114379 1129623 lin1091 Listeria innocua Clip11262 hypothetical protein NP_470428.1 1114077 D 272626 CDS NP_470429.1 16800161 1129624 1114550..1115002 1 NC_003212.1 similar to Escherichia coli YjaB protein; hypothetical protein 1115002 1129624 lin1092 Listeria innocua Clip11262 hypothetical protein NP_470429.1 1114550 D 272626 CDS NP_470430.1 16800162 1129626 1114992..1115447 1 NC_003212.1 lin1093; hypothetical protein 1115447 1129626 lin1093 Listeria innocua Clip11262 hypothetical protein NP_470430.1 1114992 D 272626 CDS NP_470431.1 16800163 1129627 complement(1115461..1116483) 1 NC_003212.1 lin1094; hypothetical protein 1116483 1129627 lin1094 Listeria innocua Clip11262 hypothetical protein NP_470431.1 1115461 R 272626 CDS NP_470432.1 16800164 1129628 complement(1116456..1117052) 1 NC_003212.1 hypothetical protein 1117052 1129628 lin1095 Listeria innocua Clip11262 hypothetical protein NP_470432.1 1116456 R 272626 CDS NP_470433.1 16800165 1129629 complement(1117049..1117768) 1 NC_003212.1 similar to transcription regulators; hypothetical protein 1117768 1129629 lin1096 Listeria innocua Clip11262 hypothetical protein NP_470433.1 1117049 R 272626 CDS NP_470434.1 16800166 1129631 1118018..1119733 1 NC_003212.1 similar to ABC transporters, ATP-binding proteins; hypothetical protein 1119733 1129631 lin1097 Listeria innocua Clip11262 hypothetical protein NP_470434.1 1118018 D 272626 CDS NP_470435.1 16800167 1129633 1119735..1121381 1 NC_003212.1 similar to ABC transporters, ATP-binding proteins; hypothetical protein 1121381 1129633 lin1098 Listeria innocua Clip11262 hypothetical protein NP_470435.1 1119735 D 272626 CDS NP_470436.1 16800168 1129634 complement(1121593..1122300) 1 NC_003212.1 lin1099; hypothetical protein 1122300 1129634 lin1099 Listeria innocua Clip11262 hypothetical protein NP_470436.1 1121593 R 272626 CDS NP_470437.1 16800169 1129636 1122290..1122760 1 NC_003212.1 lin1100; hypothetical protein 1122760 1129636 lin1100 Listeria innocua Clip11262 hypothetical protein NP_470437.1 1122290 D 272626 CDS NP_470438.1 16800170 1129638 1123071..1124624 1 NC_003212.1 similar to internalin, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 1124624 1129638 lin1101 Listeria innocua Clip11262 hypothetical protein NP_470438.1 1123071 D 272626 CDS NP_470439.1 16800171 1129639 complement(1124658..1125005) 1 NC_003212.1 lin1102; hypothetical protein 1125005 1129639 lin1102 Listeria innocua Clip11262 hypothetical protein NP_470439.1 1124658 R 272626 CDS NP_470440.1 16800172 1129640 complement(1125070..1125642) 1 NC_003212.1 similar to ATP-dependent Clp protease proteolytic component; hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1125642 1129640 lin1103 Listeria innocua Clip11262 ATP-dependent Clp protease proteolytic subunit NP_470440.1 1125070 R 272626 CDS NP_470441.1 16800173 1129641 complement(1125770..1126177) 1 NC_003212.1 lin1104; hypothetical protein 1126177 1129641 lin1104 Listeria innocua Clip11262 hypothetical protein NP_470441.1 1125770 R 272626 CDS NP_470442.1 16800174 1129642 1126269..1126748 1 NC_003212.1 similar to uroporphyrin-III C-methyltransferase; hypothetical protein 1126748 1129642 lin1105 Listeria innocua Clip11262 hypothetical protein NP_470442.1 1126269 D 272626 CDS NP_470443.1 16800175 1129643 1126867..1128231 1 NC_003212.1 similar to Salmonella enterica PduS protein; hypothetical protein 1128231 1129643 lin1106 Listeria innocua Clip11262 hypothetical protein NP_470443.1 1126867 D 272626 CDS NP_470444.1 16800176 1129645 1128228..1128782 1 NC_003212.1 similar to Salmonella enterica PduT protein; hypothetical protein 1128782 1129645 lin1107 Listeria innocua Clip11262 hypothetical protein NP_470444.1 1128228 D 272626 CDS NP_470445.1 16800177 1129646 1128930..1129280 1 NC_003212.1 similar to Salmonelle enterica PduU protein; hypothetical protein 1129280 1129646 lin1108 Listeria innocua Clip11262 hypothetical protein NP_470445.1 1128930 D 272626 CDS NP_470446.1 16800178 1129648 1129286..1129717 1 NC_003212.1 similar to Salmonella enterica PduV protein; hypothetical protein 1129717 1129648 lin1109 Listeria innocua Clip11262 hypothetical protein NP_470446.1 1129286 D 272626 CDS NP_470447.1 16800179 1129649 1129742..1130485 1 NC_003212.1 lin1110; hypothetical protein 1130485 1129649 lin1110 Listeria innocua Clip11262 hypothetical protein NP_470447.1 1129742 D 272626 CDS NP_470448.1 16800180 1129651 1130478..1131035 1 NC_003212.1 similar to bifunctional cobalamin biosynthesis protein CopB, (cobinamide kinase; cobinamide phosphatase guanylyltransferase); hypothetical protein 1131035 1129651 lin1111 Listeria innocua Clip11262 hypothetical protein NP_470448.1 1130478 D 272626 CDS NP_470449.1 16800181 1129653 1131037..1131783 1 NC_003212.1 highly similar to cobalamin (5'-phosphatase) synthetase; hypothetical protein 1131783 1129653 lin1112 Listeria innocua Clip11262 hypothetical protein NP_470449.1 1131037 D 272626 CDS NP_470450.1 16800182 1129654 1131784..1132359 1 NC_003212.1 similar to alpha-ribazole-5'-phosphatase; hypothetical protein 1132359 1129654 lin1113 Listeria innocua Clip11262 hypothetical protein NP_470450.1 1131784 D 272626 CDS NP_470451.1 16800183 1129655 complement(1132770..1133654) 1 NC_003212.1 transcriptional regulator PocR 1133654 1129655 lin1114 Listeria innocua Clip11262 transcriptional regulator PocR NP_470451.1 1132770 R 272626 CDS NP_470452.1 16800184 1129656 1133956..1134243 1 NC_003212.1 similar to Salmonella typhimurium PduA protein; hypothetical protein 1134243 1129656 lin1115 Listeria innocua Clip11262 hypothetical protein NP_470452.1 1133956 D 272626 CDS NP_470453.1 16800185 1129658 1134236..1135039 1 NC_003212.1 similar to Salmonella typhimurium PduB protein; hypothetical protein 1135039 1129658 lin1116 Listeria innocua Clip11262 hypothetical protein NP_470453.1 1134236 D 272626 CDS NP_470454.1 16800186 1129659 1135058..1136722 1 NC_003212.1 highly similar to propanediol dehydratase, alpha subunit; hypothetical protein 1136722 1129659 lin1117 Listeria innocua Clip11262 hypothetical protein NP_470454.1 1135058 D 272626 CDS NP_470455.1 16800187 1129660 1136760..1137419 1 NC_003212.1 similar to diol dehydrase (diol dehydratase) gamma subunit; hypothetical protein 1137419 1129660 lin1118 Listeria innocua Clip11262 hypothetical protein NP_470455.1 1136760 D 272626 CDS NP_470456.1 16800188 1129661 1137436..1137948 1 NC_003212.1 similar to diol dehydrase (diol dehydratase) gamma subunit (pddC); hypothetical protein 1137948 1129661 lin1119 Listeria innocua Clip11262 hypothetical protein NP_470456.1 1137436 D 272626 CDS NP_470457.1 16800189 1129662 1137993..1139813 1 NC_003212.1 similar to diol dehydratase-reactivating factor large subunit; hypothetical protein 1139813 1129662 lin1120 Listeria innocua Clip11262 hypothetical protein NP_470457.1 1137993 D 272626 CDS NP_470458.1 16800190 1129664 1139810..1140157 1 NC_003212.1 similar to diol dehydratase-reactivating factor small chain; hypothetical protein 1140157 1129664 lin1121 Listeria innocua Clip11262 hypothetical protein NP_470458.1 1139810 D 272626 CDS NP_470459.1 16800191 1129665 1140170..1140607 1 NC_003212.1 similar to Salmonella enterica PduK protein; hypothetical protein 1140607 1129665 lin1122 Listeria innocua Clip11262 hypothetical protein NP_470459.1 1140170 D 272626 CDS NP_470460.1 16800192 1129666 1140633..1140908 1 NC_003212.1 similar to carboxysome structural protein; hypothetical protein 1140908 1129666 lin1123 Listeria innocua Clip11262 hypothetical protein NP_470460.1 1140633 D 272626 CDS NP_470461.1 16800193 1129668 1140912..1141547 1 NC_003212.1 similar to Salmonella enterica PduL protein; hypothetical protein 1141547 1129668 lin1124 Listeria innocua Clip11262 hypothetical protein NP_470461.1 1140912 D 272626 CDS NP_470462.1 16800194 1129669 1141568..1142407 1 NC_003212.1 similar to ethanolamine utilization protein EutJ; hypothetical protein 1142407 1129669 lin1125 Listeria innocua Clip11262 hypothetical protein NP_470462.1 1141568 D 272626 CDS NP_470463.1 16800195 1129671 1142404..1142883 1 NC_003212.1 lin1126; hypothetical protein 1142883 1129671 lin1126 Listeria innocua Clip11262 hypothetical protein NP_470463.1 1142404 D 272626 CDS NP_470464.1 16800196 1129673 1142888..1143151 1 NC_003212.1 similar to carbon dioxide concentrating mechanism protein; hypothetical protein 1143151 1129673 lin1127 Listeria innocua Clip11262 hypothetical protein NP_470464.1 1142888 D 272626 CDS NP_470465.1 16800197 1129674 1143166..1144161 1 NC_003212.1 ATP:cob(I)alamin adenosyltransferase protein PduO 1144161 1129674 lin1128 Listeria innocua Clip11262 ATP:cob(I)alamin adenosyltransferase protein PduO NP_470465.1 1143166 D 272626 CDS NP_470466.1 16800198 1129676 1144168..1145577 1 NC_003212.1 similar to ethanolamine utilization protein EutE; hypothetical protein 1145577 1129676 lin1129 Listeria innocua Clip11262 hypothetical protein NP_470466.1 1144168 D 272626 CDS NP_470467.1 16800199 1129677 1145593..1146711 1 NC_003212.1 similar to NADPH-dependent butanol dehydrogenase; hypothetical protein 1146711 1129677 lin1130 Listeria innocua Clip11262 hypothetical protein NP_470467.1 1145593 D 272626 CDS NP_470468.1 16800200 1129678 1146739..1147443 1 NC_003212.1 similar to glycerol uptake facilitator protein; hypothetical protein 1147443 1129678 lin1131 Listeria innocua Clip11262 hypothetical protein NP_470468.1 1146739 D 272626 CDS NP_470469.1 16800201 1129679 1147511..1148704 1 NC_003212.1 similar to acetate kinase; hypothetical protein 1148704 1129679 lin1132 Listeria innocua Clip11262 hypothetical protein NP_470469.1 1147511 D 272626 CDS NP_470470.1 16800202 1129680 1148718..1149803 1 NC_003212.1 similar to Salmonella typhimurium CobD protein and to histidinol-phosphate aminotransferase; cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1149803 1129680 lin1133 Listeria innocua Clip11262 threonine-phosphate decarboxylase NP_470470.1 1148718 D 272626 CDS NP_470471.1 16800203 1129682 1149793..1150668 1 NC_003212.1 similar to Salmonella enterica PduX protein; hypothetical protein 1150668 1129682 lin1134 Listeria innocua Clip11262 hypothetical protein NP_470471.1 1149793 D 272626 CDS NP_470472.1 16800204 1129683 1151259..1152398 1 NC_003212.1 similar to NADPH-dependent butanol dehydrogenase; hypothetical protein 1152398 1129683 lin1135 Listeria innocua Clip11262 hypothetical protein NP_470472.1 1151259 D 272626 CDS NP_470473.1 16800205 1129684 1152673..1153254 1 NC_003212.1 similar to similar to two-component response regulator; hypothetical protein 1153254 1129684 lin1136 Listeria innocua Clip11262 hypothetical protein NP_470473.1 1152673 D 272626 CDS NP_470474.1 16800206 1129686 1153247..1154704 1 NC_003212.1 similar to two-component sensor histidine kinase; hypothetical protein 1154704 1129686 lin1137 Listeria innocua Clip11262 hypothetical protein NP_470474.1 1153247 D 272626 CDS NP_470475.1 16800207 1129687 1154795..1156216 1 NC_003212.1 similar to ethanolamine utilization protein EutA (putative chaperonin); reactivating factor for ethanolamine ammonia lyase 1156216 eutA 1129687 eutA Listeria innocua Clip11262 reactivating factor for ethanolamine ammonia lyase NP_470475.1 1154795 D 272626 CDS NP_470476.1 16800208 1129688 1156258..1157622 1 NC_003212.1 similar to ethanolamine ammonia-lyase, heavy chain; hypothetical protein 1157622 1129688 lin1139 Listeria innocua Clip11262 hypothetical protein NP_470476.1 1156258 D 272626 CDS NP_470477.1 16800209 1129689 1157642..1158523 1 NC_003212.1 similar to ethanolamine ammonia-lyase, light chain; catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1158523 1129689 lin1140 Listeria innocua Clip11262 ethanolamine ammonia-lyase small subunit NP_470477.1 1157642 D 272626 CDS NP_470478.1 16800210 1129690 1158546..1159199 1 NC_003212.1 similar to putative carboxysome structural protein (eutL); hypothetical protein 1159199 1129690 lin1141 Listeria innocua Clip11262 hypothetical protein NP_470478.1 1158546 D 272626 CDS NP_470479.1 16800211 1129691 1159214..1159711 1 NC_003212.1 similar to putative carboxysome structural protein; hypothetical protein 1159711 1129691 lin1142 Listeria innocua Clip11262 hypothetical protein NP_470479.1 1159214 D 272626 CDS NP_470480.1 16800212 1129693 1159711..1161171 1 NC_003212.1 similar to acetaldehyde dehydrogenase / alcohol dehydrogenase; hypothetical protein 1161171 1129693 lin1143 Listeria innocua Clip11262 hypothetical protein NP_470480.1 1159711 D 272626 CDS NP_470481.1 16800213 1129694 1161203..1161487 1 NC_003212.1 similar to putative carboxysome structural protein; hypothetical protein 1161487 1129694 lin1144 Listeria innocua Clip11262 hypothetical protein NP_470481.1 1161203 D 272626 CDS NP_470482.1 16800214 1129695 1161653..1162408 1 NC_003212.1 similar to cobalamin adenosyl transferase; hypothetical protein 1162408 1129695 lin1145 Listeria innocua Clip11262 hypothetical protein NP_470482.1 1161653 D 272626 CDS NP_470483.1 16800215 1129696 1162421..1163062 1 NC_003212.1 similar to Salmonella enterica PduL protein; hypothetical protein 1163062 1129696 lin1146 Listeria innocua Clip11262 hypothetical protein NP_470483.1 1162421 D 272626 CDS NP_470484.1 16800216 1129697 1163107..1163631 1 NC_003212.1 lin1147; hypothetical protein 1163631 1129697 lin1147 Listeria innocua Clip11262 hypothetical protein NP_470484.1 1163107 D 272626 CDS NP_470485.1 16800217 1129698 1163646..1163915 1 NC_003212.1 similar to carbon dioxide concentrating mechanism protein; hypothetical protein 1163915 1129698 lin1148 Listeria innocua Clip11262 hypothetical protein NP_470485.1 1163646 D 272626 CDS NP_470486.1 16800218 1129699 1163908..1164453 1 NC_003212.1 similar to Salmonella enterica PduT protein; hypothetical protein 1164453 1129699 lin1149 Listeria innocua Clip11262 hypothetical protein NP_470486.1 1163908 D 272626 CDS NP_470487.1 16800219 1129700 1164469..1165590 1 NC_003212.1 similar to ethanolamine utilization protein EutH - Escherichia coli; hypothetical protein 1165590 1129700 lin1150 Listeria innocua Clip11262 hypothetical protein NP_470487.1 1164469 D 272626 CDS NP_470488.1 16800220 1129701 1165583..1166029 1 NC_003212.1 similar to ethanolamine utilization protein EutQ; hypothetical protein 1166029 1129701 lin1151 Listeria innocua Clip11262 hypothetical protein NP_470488.1 1165583 D 272626 CDS NP_470489.1 16800221 1129702 complement(1166072..1166623) 1 NC_003212.1 similar to transcriptional regulator; hypothetical protein 1166623 1129702 lin1152 Listeria innocua Clip11262 hypothetical protein NP_470489.1 1166072 R 272626 CDS NP_470490.1 16800222 1129703 1166937..1167431 1 NC_003212.1 lin1153; hypothetical protein 1167431 1129703 lin1153 Listeria innocua Clip11262 hypothetical protein NP_470490.1 1166937 D 272626 CDS NP_470491.1 16800223 1129704 1167763..1169121 1 NC_003212.1 similar to cobyrinic acid a,c-diamide synthase; responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1169121 1129704 lin1154 Listeria innocua Clip11262 cobyrinic acid a,c-diamide synthase NP_470491.1 1167763 D 272626 CDS NP_470492.1 16800224 1129706 1169118..1170065 1 NC_003212.1 similar to cobalamine synthesis protein CbiB; CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1170065 cobD 1129706 cobD Listeria innocua Clip11262 cobalamin biosynthesis protein NP_470492.1 1169118 D 272626 CDS NP_470493.1 16800225 1129707 1170078..1170710 1 NC_003212.1 similar to precorrin isomerase; catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 1170710 cbiC 1129707 cbiC Listeria innocua Clip11262 cobalt-precorrin-8X methylmutase NP_470493.1 1170078 D 272626 CDS NP_470494.1 16800226 1129708 1170726..1171847 1 NC_003212.1 similar to cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1171847 cbiD 1129708 cbiD Listeria innocua Clip11262 cobalt-precorrin-6A synthase NP_470494.1 1170726 D 272626 CDS NP_470495.1 16800227 1129709 1171844..1172440 1 NC_003212.1 similar to precorrin methylase; catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 1172440 1129709 lin1158 Listeria innocua Clip11262 cobalt-precorrin-6Y C(5)-methyltransferase NP_470495.1 1171844 D 272626 CDS NP_470496.1 16800228 1129710 1172430..1172999 1 NC_003212.1 similar to precorrin decarbocylase; catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 1172999 1129710 lin1159 Listeria innocua Clip11262 cobalt-precorrin-6Y C(15)-methyltransferase NP_470496.1 1172430 D 272626 CDS NP_470497.1 16800229 1129711 1173005..1173754 1 NC_003212.1 similar to precorrin-3 methylase; hypothetical protein 1173754 1129711 lin1160 Listeria innocua Clip11262 hypothetical protein NP_470497.1 1173005 D 272626 CDS NP_470498.1 16800230 1129713 1173741..1174772 1 NC_003212.1 similar to cobalamin biosynthesis protein G CbiG; catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 1174772 1129713 lin1161 Listeria innocua Clip11262 cobalamin biosynthesis protein CbiG NP_470498.1 1173741 D 272626 CDS NP_470499.1 16800231 1129714 1174769..1175494 1 NC_003212.1 similar to precorrin methylase; catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C17-methyltransferase 1175494 1129714 lin1162 Listeria innocua Clip11262 precorrin-3B C17-methyltransferase NP_470499.1 1174769 D 272626 CDS NP_470500.1 16800232 1129715 1175491..1176243 1 NC_003212.1 similar to cobalamin biosynthesis J protein CbiJ; hypothetical protein 1176243 1129715 lin1163 Listeria innocua Clip11262 hypothetical protein NP_470500.1 1175491 D 272626 CDS NP_470501.1 16800233 1129717 1176243..1177724 1 NC_003212.1 similar uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; hypothetical protein 1177724 1129717 lin1164 Listeria innocua Clip11262 hypothetical protein NP_470501.1 1176243 D 272626 CDS NP_470502.1 16800234 1129718 1177721..1178506 1 NC_003212.1 similar to anaerobic Cobalt Chelatase In Cobalamin Biosynthesis; hypothetical protein 1178506 1129718 lin1165 Listeria innocua Clip11262 hypothetical protein NP_470502.1 1177721 D 272626 CDS NP_470503.1 16800235 1129719 1178499..1179209 1 NC_003212.1 similar to S-adenosyl-methionine: precorrin-2 methyltransferase; catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 1179209 1129719 lin1166 Listeria innocua Clip11262 cobalt-precorrin-2 C(20)-methyltransferase NP_470503.1 1178499 D 272626 CDS NP_470504.2 161723261 1129721 1179290..1179940 1 NC_003212.1 similar to cobalamin biosynthesis protein M; catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 1179940 1129721 lin1167 Listeria innocua Clip11262 cobalt transport protein CbiM NP_470504.2 1179290 D 272626 CDS NP_470505.1 16800237 1129723 1179937..1180233 1 NC_003212.1 similar to putative cobalt transport protein CbiN; periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 1180233 1129723 lin1168 Listeria innocua Clip11262 cobalt transport protein CbiN NP_470505.1 1179937 D 272626 CDS NP_470506.1 16800238 1129724 1180220..1180897 1 NC_003212.1 similar to cobalt transport protein Q; hypothetical protein 1180897 1129724 lin1169 Listeria innocua Clip11262 hypothetical protein NP_470506.1 1180220 D 272626 CDS NP_470507.1 16800239 1129725 1180910..1181716 1 NC_003212.1 similar to cobalt transport ATP-binding protein CbiO; hypothetical protein 1181716 1129725 lin1170 Listeria innocua Clip11262 hypothetical protein NP_470507.1 1180910 D 272626 CDS NP_470508.1 16800240 1129727 1181716..1183251 1 NC_003212.1 similar to cobyric acid synthase CbiP; catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1183251 1129727 lin1171 Listeria innocua Clip11262 cobyric acid synthase NP_470508.1 1181716 D 272626 CDS NP_470509.1 16800241 1129728 1183215..1183781 1 NC_003212.1 hypothetical protein 1183781 1129728 lin1172 Listeria innocua Clip11262 hypothetical protein NP_470509.1 1183215 D 272626 CDS NP_470510.1 16800242 1129729 complement(1183825..1184292) 1 NC_003212.1 hypothetical protein 1184292 1129729 lin1173 Listeria innocua Clip11262 hypothetical protein NP_470510.1 1183825 R 272626 CDS NP_470511.1 16800243 1129730 complement(1184307..1184756) 1 NC_003212.1 hypothetical protein 1184756 1129730 lin1174 Listeria innocua Clip11262 hypothetical protein NP_470511.1 1184307 R 272626 CDS NP_470512.1 16800244 1129731 1184845..1185375 1 NC_003212.1 hypothetical protein 1185375 1129731 lin1175 Listeria innocua Clip11262 hypothetical protein NP_470512.1 1184845 D 272626 CDS NP_470513.1 16800245 1129732 1185406..1185717 1 NC_003212.1 hypothetical protein 1185717 1129732 lin1176 Listeria innocua Clip11262 hypothetical protein NP_470513.1 1185406 D 272626 CDS NP_470514.1 16800246 1129734 1185720..1186268 1 NC_003212.1 lin1177; hypothetical protein 1186268 1129734 lin1177 Listeria innocua Clip11262 hypothetical protein NP_470514.1 1185720 D 272626 CDS NP_470515.1 16800247 1129735 1186568..1187437 1 NC_003212.1 similar to N-acetylmuramoyl-L-alanine amidase (autolysin); hypothetical protein 1187437 1129735 lin1178 Listeria innocua Clip11262 hypothetical protein NP_470515.1 1186568 D 272626 CDS NP_470516.1 16800248 1129736 1187734..1188720 1 NC_003212.1 similar to N-acetylmuramoyl-L-alanine amidase (autolysin); hypothetical protein 1188720 1129736 lin1179 Listeria innocua Clip11262 hypothetical protein NP_470516.1 1187734 D 272626 CDS NP_470517.1 16800249 1129737 1188832..1189911 1 NC_003212.1 similar to endo-1,4-beta-glucanase and to aminopeptidase; hypothetical protein 1189911 1129737 lin1180 Listeria innocua Clip11262 hypothetical protein NP_470517.1 1188832 D 272626 CDS NP_470518.1 16800250 1129738 1189937..1190695 1 NC_003212.1 similar to rRNA methylase; hypothetical protein 1190695 1129738 lin1181 Listeria innocua Clip11262 hypothetical protein NP_470518.1 1189937 D 272626 CDS NP_470519.1 16800251 1129739 complement(1190739..1191098) 1 NC_003212.1 lin1182; hypothetical protein 1191098 1129739 lin1182 Listeria innocua Clip11262 hypothetical protein NP_470519.1 1190739 R 272626 CDS NP_470520.1 16800252 1129740 1191255..1191578 1 NC_003212.1 hypothetical protein 1191578 1129740 lin1183 Listeria innocua Clip11262 hypothetical protein NP_470520.1 1191255 D 272626 CDS NP_470521.1 16800253 1129741 1191944..1192996 1 NC_003212.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1192996 pheS 1129741 pheS Listeria innocua Clip11262 phenylalanyl-tRNA synthetase subunit alpha NP_470521.1 1191944 D 272626 CDS NP_470522.1 16800254 1129742 1192996..1195404 1 NC_003212.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1195404 pheT 1129742 pheT Listeria innocua Clip11262 phenylalanyl-tRNA synthetase subunit beta NP_470522.1 1192996 D 272626 CDS NP_470523.1 16800255 1129743 1195559..1196260 1 NC_003212.1 similar to ABC transporter, ATP-binding proteins; hypothetical protein 1196260 1129743 lin1186 Listeria innocua Clip11262 hypothetical protein NP_470523.1 1195559 D 272626 CDS NP_470524.1 16800256 1129744 1196274..1199684 1 NC_003212.1 similar to different proteins; hypothetical protein 1199684 1129744 lin1187 Listeria innocua Clip11262 hypothetical protein NP_470524.1 1196274 D 272626 CDS NP_470525.1 16800257 1129745 1199781..1200233 1 NC_003212.1 similar to transcriptional regulator (MarR family).; hypothetical protein 1200233 1129745 lin1188 Listeria innocua Clip11262 hypothetical protein NP_470525.1 1199781 D 272626 CDS NP_470526.1 16800258 1129746 1200249..1203449 1 NC_003212.1 similar to transporter, (to Bacillus subtilis YdgH protein); hypothetical protein 1203449 1129746 lin1189 Listeria innocua Clip11262 hypothetical protein NP_470526.1 1200249 D 272626 CDS NP_470527.1 16800259 1129747 1203555..1204229 1 NC_003212.1 similar to uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1204229 1129747 lin1190 Listeria innocua Clip11262 uracil-DNA glycosylase NP_470527.1 1203555 D 272626 CDS NP_470528.1 16800260 1129748 complement(1204267..1205193) 1 NC_003212.1 similar to Bacillus subtilis ribonuclease HIII; An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 1205193 1129748 lin1191 Listeria innocua Clip11262 ribonuclease HIII NP_470528.1 1204267 R 272626 CDS NP_470529.1 16800261 1129749 1205347..1205610 1 NC_003212.1 similar to Bacillus subtilis YshA protein; hypothetical protein 1205610 1129749 lin1192 Listeria innocua Clip11262 hypothetical protein NP_470529.1 1205347 D 272626 CDS NP_470530.1 16800262 1129751 1205610..1206152 1 NC_003212.1 similar to Bacillus subtilis YshB protein; hypothetical protein 1206152 1129751 lin1193 Listeria innocua Clip11262 hypothetical protein NP_470530.1 1205610 D 272626 CDS NP_470531.1 16800263 1129752 1206245..1207957 1 NC_003212.1 similar to DNA polymerase beta, to Bacillus subtilis YshC protein; hypothetical protein 1207957 1129752 lin1194 Listeria innocua Clip11262 hypothetical protein NP_470531.1 1206245 D 272626 CDS NP_470532.1 16800264 1129753 1207980..1210337 1 NC_003212.1 similar to MutS protein (MutS2); MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 1210337 1129753 lin1195 Listeria innocua Clip11262 recombination and DNA strand exchange inhibitor protein NP_470532.1 1207980 D 272626 CDS NP_470533.1 16800265 1129754 1210418..1210729 1 NC_003212.1 thioredoxin 1210729 trxA 1129754 trxA Listeria innocua Clip11262 thioredoxin NP_470533.1 1210418 D 272626 CDS NP_470534.1 16800266 1129755 1210805..1212616 1 NC_003212.1 highly similar to excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1212616 uvrC 1129755 uvrC Listeria innocua Clip11262 excinuclease ABC subunit C NP_470534.1 1210805 D 272626 CDS NP_470535.1 16800267 1129756 1212799..1214013 1 NC_003212.1 similar to aspartokinase II alpha subunit; catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation; aspartate kinase 1214013 1129756 lin1198 Listeria innocua Clip11262 aspartate kinase NP_470535.1 1212799 D 272626 CDS NP_470536.1 16800268 1129757 complement(1214085..1214570) 1 NC_003212.1 similar to Bacillus subtilis YslB protein; hypothetical protein 1214570 1129757 lin1199 Listeria innocua Clip11262 hypothetical protein NP_470536.1 1214085 R 272626 CDS NP_470537.1 16800269 1129758 1214728..1215528 1 NC_003212.1 similar to glutamate racemase; converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1215528 1129758 lin1200 Listeria innocua Clip11262 glutamate racemase NP_470537.1 1214728 D 272626 CDS NP_470538.1 16800270 1129759 1215541..1216287 1 NC_003212.1 similar to ribonuclease PH; RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 1216287 rph 1129759 rph Listeria innocua Clip11262 ribonuclease PH NP_470538.1 1215541 D 272626 CDS NP_470539.1 16800271 1129761 1216291..1216902 1 NC_003212.1 Nucleoside-triphosphatase; hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 1216902 1129761 lin1202 Listeria innocua Clip11262 nucleoside-triphosphatase NP_470539.1 1216291 D 272626 CDS NP_470540.1 16800272 1129762 1216940..1217464 1 NC_003212.1 conserved hypothetical protein, similar to Bacillus subtilis YsnB protein; hypothetical protein 1217464 1129762 lin1203 Listeria innocua Clip11262 hypothetical protein NP_470540.1 1216940 D 272626 CDS NP_470541.1 16800273 1129763 1218927..1222640 1 NC_003212.1 similar to internalin proteins (LPXTG motif); hypothetical protein 1222640 1129763 lin1204 Listeria innocua Clip11262 hypothetical protein NP_470541.1 1218927 D 272626 CDS NP_470542.1 16800274 1129764 1222883..1224241 1 NC_003212.1 lin1205; hypothetical protein 1224241 1129764 lin1205 Listeria innocua Clip11262 hypothetical protein NP_470542.1 1222883 D 272626 CDS NP_470543.1 16800275 1129765 complement(1224283..1224876) 1 NC_003212.1 similar to Bacillus subtilis YdeI protein; hypothetical protein 1224876 1129765 lin1206 Listeria innocua Clip11262 hypothetical protein NP_470543.1 1224283 R 272626 CDS NP_470544.1 16800276 1129766 complement(1224994..1225401) 1 NC_003212.1 lin1207; hypothetical protein 1225401 1129766 lin1207 Listeria innocua Clip11262 hypothetical protein NP_470544.1 1224994 R 272626 CDS NP_470545.1 16800277 1129767 1225566..1226165 1 NC_003212.1 weakly similar to phosphoglycerate mutase 1; hypothetical protein 1226165 1129767 lin1208 Listeria innocua Clip11262 hypothetical protein NP_470545.1 1225566 D 272626 CDS NP_470546.1 16800278 1129768 1226361..1226723 1 NC_003212.1 lin1209; hypothetical protein 1226723 1129768 lin1209 Listeria innocua Clip11262 hypothetical protein NP_470546.1 1226361 D 272626 CDS NP_470547.1 16800279 1129770 1226716..1226991 1 NC_003212.1 lin1210; hypothetical protein 1226991 1129770 lin1210 Listeria innocua Clip11262 hypothetical protein NP_470547.1 1226716 D 272626 CDS NP_470548.1 16800280 1129771 1226999..1228459 1 NC_003212.1 lin1211; hypothetical protein 1228459 1129771 lin1211 Listeria innocua Clip11262 hypothetical protein NP_470548.1 1226999 D 272626 CDS NP_470549.1 16800281 1129772 1228896..1229450 1 NC_003212.1 lin1212; hypothetical protein 1229450 1129772 lin1212 Listeria innocua Clip11262 hypothetical protein NP_470549.1 1228896 D 272626 CDS NP_470550.1 16800282 1129773 complement(1229498..1229758) 1 NC_003212.1 lin1213; hypothetical protein 1229758 1129773 lin1213 Listeria innocua Clip11262 hypothetical protein NP_470550.1 1229498 R 272626 CDS NP_470551.1 16800283 1129774 1229882..1231294 1 NC_003212.1 similar to ATP-dependent RNA helicase (DEAD motif); hypothetical protein 1231294 1129774 lin1214 Listeria innocua Clip11262 hypothetical protein NP_470551.1 1229882 D 272626 CDS NP_470552.1 16800284 1129775 1231748..1232224 1 NC_003212.1 weakly similar to 8-oxo-dGTPase (mutT); hypothetical protein 1232224 1129775 lin1215 Listeria innocua Clip11262 hypothetical protein NP_470552.1 1231748 D 272626 CDS NP_470553.1 16800285 1129776 complement(1232261..1232506) 1 NC_003212.1 lin1216; hypothetical protein 1232506 1129776 lin1216 Listeria innocua Clip11262 hypothetical protein NP_470553.1 1232261 R 272626 CDS NP_470554.1 16800286 1129777 complement(1232503..1233708) 1 NC_003212.1 similar to antibiotic resistance protein; hypothetical protein 1233708 1129777 lin1217 Listeria innocua Clip11262 hypothetical protein NP_470554.1 1232503 R 272626 CDS NP_470555.1 16800287 1129778 1233906..1234565 1 NC_003212.1 similar to regulator of the Fnr CRP family (including PrfA); hypothetical protein 1234565 1129778 lin1218 Listeria innocua Clip11262 hypothetical protein NP_470555.1 1233906 D 272626 CDS NP_470556.1 16800288 1129779 complement(1234873..1235718) 1 NC_003212.1 similar to Bacillus subtilis YxkD protein; hypothetical protein 1235718 1129779 lin1219 Listeria innocua Clip11262 hypothetical protein NP_470556.1 1234873 R 272626 CDS NP_470557.1 16800289 1129780 complement(1236047..1236184) 1 NC_003212.1 lin1220; hypothetical protein 1236184 1129780 lin1220 Listeria innocua Clip11262 hypothetical protein NP_470557.1 1236047 R 272626 CDS NP_470558.1 16800290 1129781 1236335..1237048 1 NC_003212.1 similar to transcription regulator GntR family; hypothetical protein 1237048 1129781 lin1221 Listeria innocua Clip11262 hypothetical protein NP_470558.1 1236335 D 272626 CDS NP_470559.1 16800291 1129782 complement(1237078..1238724) 1 NC_003212.1 similar to alpha,alpha-phosphotrehalase; hypothetical protein 1238724 1129782 lin1222 Listeria innocua Clip11262 hypothetical protein NP_470559.1 1237078 R 272626 CDS NP_470560.1 16800292 1129783 complement(1238743..1240227) 1 NC_003212.1 similar to PTS system trehalose specific enzyme IIBC; hypothetical protein 1240227 1129783 lin1223 Listeria innocua Clip11262 hypothetical protein NP_470560.1 1238743 R 272626 CDS NP_470561.1 16800293 1129784 1240343..1240795 1 NC_003212.1 lin1224; hypothetical protein 1240795 1129784 lin1224 Listeria innocua Clip11262 hypothetical protein NP_470561.1 1240343 D 272626 CDS NP_470562.1 16800294 1129785 complement(1240842..1241306) 1 NC_003212.1 lin1225; hypothetical protein 1241306 1129785 lin1225 Listeria innocua Clip11262 hypothetical protein NP_470562.1 1240842 R 272626 CDS NP_470563.1 16800295 1129786 1241495..1242415 1 NC_003212.1 lin1226; hypothetical protein 1242415 1129786 lin1226 Listeria innocua Clip11262 hypothetical protein NP_470563.1 1241495 D 272626 CDS NP_470564.1 16800296 1129787 complement(1242435..1243682) 1 NC_003212.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1243682 proA 1129787 proA Listeria innocua Clip11262 gamma-glutamyl phosphate reductase NP_470564.1 1242435 R 272626 CDS NP_470565.1 16800297 1129788 complement(1243666..1244496) 1 NC_003212.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1244496 proB 1129788 proB Listeria innocua Clip11262 gamma-glutamyl kinase NP_470565.1 1243666 R 272626 CDS NP_470566.1 16800298 1129790 complement(1244632..1245771) 1 NC_003212.1 lin1229; hypothetical protein 1245771 1129790 lin1229 Listeria innocua Clip11262 hypothetical protein NP_470566.1 1244632 R 272626 CDS NP_470567.1 16800299 1129791 complement(1245851..1246246) 1 NC_003212.1 similar to transcriptional regulator (phage-related); hypothetical protein 1246246 1129791 lin1230 Listeria innocua Clip11262 hypothetical protein NP_470567.1 1245851 R 272626 CDS NP_470568.1 16800300 1129792 complement(1246563..1247978) 1 NC_003212.1 similar to site-specific recombinase for integration and excision [bacteriophage phi-105]; hypothetical protein 1247978 1129792 lin1231 Listeria innocua Clip11262 hypothetical protein NP_470568.1 1246563 R 272626 CDS NP_470569.1 16800301 1129793 complement(1248055..1248726) 1 NC_003212.1 hypothetical protein 1248726 1129793 lin1232 Listeria innocua Clip11262 hypothetical protein NP_470569.1 1248055 R 272626 CDS NP_470570.1 16800302 1129794 complement(1248769..1249188) 1 NC_003212.1 similar to bacteriophage phi-105 ORF2 protein; hypothetical protein 1249188 1129794 lin1233 Listeria innocua Clip11262 hypothetical protein NP_470570.1 1248769 R 272626 CDS NP_470571.1 16800303 1129795 complement(1249205..1249633) 1 NC_003212.1 similar to immunity repressor [bacteriophage phi-105]; hypothetical protein 1249633 1129795 lin1234 Listeria innocua Clip11262 hypothetical protein NP_470571.1 1249205 R 272626 CDS NP_470572.1 16800304 1129796 1249793..1249978 1 NC_003212.1 similar to transcription regulator; hypothetical protein 1249978 1129796 lin1235 Listeria innocua Clip11262 hypothetical protein NP_470572.1 1249793 D 272626 CDS NP_470573.1 16800305 1129797 1250055..1250579 1 NC_003212.1 lin1236; hypothetical protein 1250579 1129797 lin1236 Listeria innocua Clip11262 hypothetical protein NP_470573.1 1250055 D 272626 CDS NP_470574.1 16800306 1129798 1250592..1250750 1 NC_003212.1 lin1237; hypothetical protein 1250750 1129798 lin1237 Listeria innocua Clip11262 hypothetical protein NP_470574.1 1250592 D 272626 CDS NP_470575.1 16800307 1129800 1250744..1250908 1 NC_003212.1 lin1238; hypothetical protein 1250908 1129800 lin1238 Listeria innocua Clip11262 hypothetical protein NP_470575.1 1250744 D 272626 CDS NP_470576.1 16800308 1129801 1251058..1251342 1 NC_003212.1 lin1239; hypothetical protein 1251342 1129801 lin1239 Listeria innocua Clip11262 hypothetical protein NP_470576.1 1251058 D 272626 CDS NP_470577.1 16800309 1129802 1251765..1252106 1 NC_003212.1 lin1240; hypothetical protein 1252106 1129802 lin1240 Listeria innocua Clip11262 hypothetical protein NP_470577.1 1251765 D 272626 CDS NP_470578.1 16800310 1129804 1252093..1254033 1 NC_003212.1 similar to bacteriophage protein; hypothetical protein 1254033 1129804 lin1241 Listeria innocua Clip11262 hypothetical protein NP_470578.1 1252093 D 272626 CDS NP_470579.1 16800311 1129806 1254037..1254819 1 NC_003212.1 some similarities to phage related proteins; hypothetical protein 1254819 1129806 lin1242 Listeria innocua Clip11262 hypothetical protein NP_470579.1 1254037 D 272626 CDS NP_470580.1 16800312 1129807 1254758..1255516 1 NC_003212.1 similar to hypothetical protein 44 - Staphylococcus aureus phage phi PVL; hypothetical protein 1255516 1129807 lin1243 Listeria innocua Clip11262 hypothetical protein NP_470580.1 1254758 D 272626 CDS NP_470581.1 16800313 1129808 1255528..1256445 1 NC_003212.1 lin1244; hypothetical protein 1256445 1129808 lin1244 Listeria innocua Clip11262 hypothetical protein NP_470581.1 1255528 D 272626 CDS NP_470582.1 16800314 1129810 1256321..1257184 1 NC_003212.1 similarities Staphylococcus aureus prophage phiPV83; hypothetical protein 1257184 1129810 lin1245 Listeria innocua Clip11262 hypothetical protein NP_470582.1 1256321 D 272626 CDS NP_470583.1 16800315 1129811 1257362..1257589 1 NC_003212.1 lin1246; hypothetical protein 1257589 1129811 lin1246 Listeria innocua Clip11262 hypothetical protein NP_470583.1 1257362 D 272626 CDS NP_470584.1 16800316 1129813 1257546..1257785 1 NC_003212.1 lin1247; hypothetical protein 1257785 1129813 lin1247 Listeria innocua Clip11262 hypothetical protein NP_470584.1 1257546 D 272626 CDS NP_470585.1 16800317 1129815 1257766..1258203 1 NC_003212.1 similar to hypothetical protein, Staphylococcus aureus phage phi PVL; hypothetical protein 1258203 1129815 lin1248 Listeria innocua Clip11262 hypothetical protein NP_470585.1 1257766 D 272626 CDS NP_470586.1 16800318 1129816 1258225..1258845 1 NC_003212.1 lin1249; hypothetical protein 1258845 1129816 lin1249 Listeria innocua Clip11262 hypothetical protein NP_470586.1 1258225 D 272626 CDS NP_470587.1 16800319 1129817 1258886..1259263 1 NC_003212.1 lin1250; hypothetical protein 1259263 1129817 lin1250 Listeria innocua Clip11262 hypothetical protein NP_470587.1 1258886 D 272626 CDS NP_470588.1 16800320 1129819 1259223..1259399 1 NC_003212.1 lin1251; hypothetical protein 1259399 1129819 lin1251 Listeria innocua Clip11262 hypothetical protein NP_470588.1 1259223 D 272626 CDS NP_470589.1 16800321 1129820 1259411..1259833 1 NC_003212.1 lin1252; hypothetical protein 1259833 1129820 lin1252 Listeria innocua Clip11262 hypothetical protein NP_470589.1 1259411 D 272626 CDS NP_470590.1 16800322 1129821 1259830..1261191 1 NC_003212.1 lin1253; hypothetical protein 1261191 1129821 lin1253 Listeria innocua Clip11262 hypothetical protein NP_470590.1 1259830 D 272626 CDS NP_470591.1 16800323 1129822 1261428..1262372 1 NC_003212.1 similar to phage intagrase proteins; hypothetical protein 1262372 1129822 lin1254 Listeria innocua Clip11262 hypothetical protein NP_470591.1 1261428 D 272626 CDS NP_470592.1 16800324 1129823 1262385..1263065 1 NC_003212.1 lin1255; hypothetical protein 1263065 1129823 lin1255 Listeria innocua Clip11262 hypothetical protein NP_470592.1 1262385 D 272626 CDS NP_470593.1 16800325 1129825 1263062..1263355 1 NC_003212.1 lin1256; hypothetical protein 1263355 1129825 lin1256 Listeria innocua Clip11262 hypothetical protein NP_470593.1 1263062 D 272626 CDS NP_470594.1 16800326 1129826 complement(1263766..1264293) 1 NC_003212.1 lin1257; hypothetical protein 1264293 1129826 lin1257 Listeria innocua Clip11262 hypothetical protein NP_470594.1 1263766 R 272626 CDS NP_470595.1 16800327 1129827 1264368..1264922 1 NC_003212.1 lin1258; hypothetical protein 1264922 1129827 lin1258 Listeria innocua Clip11262 hypothetical protein NP_470595.1 1264368 D 272626 CDS NP_470596.1 16800328 1129828 1265000..1265425 1 NC_003212.1 similar to protein gp66 [Bacteriophage A118]; hypothetical protein 1265425 1129828 lin1259 Listeria innocua Clip11262 hypothetical protein NP_470596.1 1265000 D 272626 CDS NP_470597.1 16800329 1129829 1265438..1266205 1 NC_003212.1 similar to probable antirepressor - Bacillus subtilis phage SPBc2; hypothetical protein 1266205 1129829 lin1260 Listeria innocua Clip11262 hypothetical protein NP_470597.1 1265438 D 272626 CDS NP_470598.1 16800330 1129831 1266855..1267334 1 NC_003212.1 lin1261; hypothetical protein 1267334 1129831 lin1261 Listeria innocua Clip11262 hypothetical protein NP_470598.1 1266855 D 272626 CDS NP_470599.1 16800331 1129832 1267399..1268736 1 NC_003212.1 lin1262; hypothetical protein 1268736 1129832 lin1262 Listeria innocua Clip11262 hypothetical protein NP_470599.1 1267399 D 272626 CDS NP_470600.1 16800332 1129833 1268784..1268981 1 NC_003212.1 lin1263; hypothetical protein 1268981 1129833 lin1263 Listeria innocua Clip11262 hypothetical protein NP_470600.1 1268784 D 272626 CDS NP_470601.1 16800333 1129834 1269111..1269341 1 NC_003212.1 lin1264; hypothetical protein 1269341 1129834 lin1264 Listeria innocua Clip11262 hypothetical protein NP_470601.1 1269111 D 272626 CDS NP_470602.1 16800334 1129835 1269369..1269593 1 NC_003212.1 lin1265; hypothetical protein 1269593 1129835 lin1265 Listeria innocua Clip11262 hypothetical protein NP_470602.1 1269369 D 272626 CDS NP_470603.1 16800335 1129836 1269646..1270482 1 NC_003212.1 similar to phage protein; hypothetical protein 1270482 1129836 lin1266 Listeria innocua Clip11262 hypothetical protein NP_470603.1 1269646 D 272626 CDS NP_470604.1 16800336 1129838 1270469..1271803 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1271803 1129838 lin1267 Listeria innocua Clip11262 hypothetical protein NP_470604.1 1270469 D 272626 CDS NP_470605.1 16800337 1129840 1271793..1273367 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1273367 1129840 lin1268 Listeria innocua Clip11262 hypothetical protein NP_470605.1 1271793 D 272626 CDS NP_470606.1 16800338 1129842 1273354..1275102 1 NC_003212.1 hypothetical protein 1275102 1129842 lin1269 Listeria innocua Clip11262 hypothetical protein NP_470606.1 1273354 D 272626 CDS NP_470607.1 16800339 1129843 1275480..1276574 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1276574 1129843 lin1270 Listeria innocua Clip11262 hypothetical protein NP_470607.1 1275480 D 272626 CDS NP_470608.1 16800340 1129844 1276590..1277519 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1277519 1129844 lin1271 Listeria innocua Clip11262 hypothetical protein NP_470608.1 1276590 D 272626 CDS NP_470609.1 16800341 1129846 1277525..1277737 1 NC_003212.1 lin1272; hypothetical protein 1277737 1129846 lin1272 Listeria innocua Clip11262 hypothetical protein NP_470609.1 1277525 D 272626 CDS NP_470610.1 16800342 1129847 1277749..1278153 1 NC_003212.1 hypothetical protein 1278153 1129847 lin1273 Listeria innocua Clip11262 hypothetical protein NP_470610.1 1277749 D 272626 CDS NP_470611.1 16800343 1129849 1278155..1278514 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1278514 1129849 lin1274 Listeria innocua Clip11262 hypothetical protein NP_470611.1 1278155 D 272626 CDS NP_470612.1 16800344 1129851 1278514..1279020 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1279020 1129851 lin1275 Listeria innocua Clip11262 hypothetical protein NP_470612.1 1278514 D 272626 CDS NP_470613.1 16800345 1129852 1279030..1279509 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1279509 1129852 lin1276 Listeria innocua Clip11262 hypothetical protein NP_470613.1 1279030 D 272626 CDS NP_470614.1 16800346 1129854 1279502..1279738 1 NC_003212.1 lin1277; hypothetical protein 1279738 1129854 lin1277 Listeria innocua Clip11262 hypothetical protein NP_470614.1 1279502 D 272626 CDS NP_470615.1 16800347 1129856 1279740..1281098 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1281098 1129856 lin1278 Listeria innocua Clip11262 hypothetical protein NP_470615.1 1279740 D 272626 CDS NP_470616.1 16800348 1129858 1281100..1281546 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1281546 1129858 lin1279 Listeria innocua Clip11262 hypothetical protein NP_470616.1 1281100 D 272626 CDS NP_470617.1 16800349 1129859 1281621..1282109 1 NC_003212.1 similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1282109 1129859 lin1280 Listeria innocua Clip11262 hypothetical protein NP_470617.1 1281621 D 272626 CDS NP_470618.1 16800350 1129861 1282298..1286263 1 NC_003212.1 similar to phage proteins; hypothetical protein 1286263 1129861 lin1282 Listeria innocua Clip11262 hypothetical protein NP_470618.1 1282298 D 272626 CDS NP_470619.1 16800351 1129863 1286256..1286939 1 NC_003212.1 similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1286939 1129863 lin1283 Listeria innocua Clip11262 hypothetical protein NP_470619.1 1286256 D 272626 CDS NP_470620.1 16800352 1129864 1286950..1287927 1 NC_003212.1 similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1287927 1129864 lin1284 Listeria innocua Clip11262 hypothetical protein NP_470620.1 1286950 D 272626 CDS NP_470621.1 16800353 1129866 1287927..1288181 1 NC_003212.1 similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1288181 1129866 lin1285 Listeria innocua Clip11262 hypothetical protein NP_470621.1 1287927 D 272626 CDS NP_470622.1 16800354 1129867 1288196..1288603 1 NC_003212.1 similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1288603 1129867 lin1286 Listeria innocua Clip11262 hypothetical protein NP_470622.1 1288196 D 272626 CDS NP_470623.1 16800355 1129869 1288604..1289689 1 NC_003212.1 similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1289689 1129869 lin1287 Listeria innocua Clip11262 hypothetical protein NP_470623.1 1288604 D 272626 CDS NP_470624.1 16800356 1129870 1289700..1290269 1 NC_003212.1 similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1290269 1129870 lin1288 Listeria innocua Clip11262 hypothetical protein NP_470624.1 1289700 D 272626 CDS NP_470625.1 16800357 1129872 1290266..1290535 1 NC_003212.1 hypothetical protein 1290535 1129872 lin1289 Listeria innocua Clip11262 hypothetical protein NP_470625.1 1290266 D 272626 CDS NP_470626.1 16800358 1129874 1290537..1291358 1 NC_003212.1 lin1290; hypothetical protein 1291358 1129874 lin1290 Listeria innocua Clip11262 hypothetical protein NP_470626.1 1290537 D 272626 CDS NP_470627.1 16800359 1129876 1291364..1291705 1 NC_003212.1 lin1291; hypothetical protein 1291705 1129876 lin1291 Listeria innocua Clip11262 hypothetical protein NP_470627.1 1291364 D 272626 CDS NP_470628.1 16800360 1129877 1291735..1291860 1 NC_003212.1 lin1292; hypothetical protein 1291860 1129877 lin1292 Listeria innocua Clip11262 hypothetical protein NP_470628.1 1291735 D 272626 CDS NP_470629.1 16800361 1129878 1291891..1292337 1 NC_003212.1 lin1293; hypothetical protein 1292337 1129878 lin1293 Listeria innocua Clip11262 hypothetical protein NP_470629.1 1291891 D 272626 CDS NP_470630.1 16800362 1129880 1292313..1292759 1 NC_003212.1 lin1294; hypothetical protein 1292759 1129880 lin1294 Listeria innocua Clip11262 hypothetical protein NP_470630.1 1292313 D 272626 CDS NP_470631.1 16800363 1129881 1292853..1293116 1 NC_003212.1 similar to holin; hypothetical protein 1293116 1129881 lin1295 Listeria innocua Clip11262 hypothetical protein NP_470631.1 1292853 D 272626 CDS NP_470632.1 16800364 1129883 1293119..1293952 1 NC_003212.1 similar to hypothetical protein - phage SPP1; hypothetical protein 1293952 1129883 lin1296 Listeria innocua Clip11262 hypothetical protein NP_470632.1 1293119 D 272626 CDS NP_470633.1 16800365 1129884 complement(1294014..1294235) 1 NC_003212.1 similar to Portein gp28 [Bacteriophage A118]; hypothetical protein 1294235 1129884 lin1297 Listeria innocua Clip11262 hypothetical protein NP_470633.1 1294014 R 272626 CDS NP_470634.1 16800366 1129885 complement(1294263..1294466) 1 NC_003212.1 lin1298; hypothetical protein 1294466 1129885 lin1298 Listeria innocua Clip11262 hypothetical protein NP_470634.1 1294263 R 272626 CDS NP_470635.1 16800367 1129886 complement(1294480..1294845) 1 NC_003212.1 lin1299; hypothetical protein 1294845 1129886 lin1299 Listeria innocua Clip11262 hypothetical protein NP_470635.1 1294480 R 272626 CDS NP_470636.1 16800368 1129887 1295418..1296029 1 NC_003212.1 lin1300; hypothetical protein 1296029 1129887 lin1300 Listeria innocua Clip11262 hypothetical protein NP_470636.1 1295418 D 272626 CDS NP_470637.1 16800369 1129888 1296051..1296416 1 NC_003212.1 lin1301; hypothetical protein 1296416 1129888 lin1301 Listeria innocua Clip11262 hypothetical protein NP_470637.1 1296051 D 272626 CDS NP_470638.1 16800370 1129889 1296787..1297008 1 NC_003212.1 lin1302; hypothetical protein 1297008 1129889 lin1302 Listeria innocua Clip11262 hypothetical protein NP_470638.1 1296787 D 272626 CDS NP_470639.1 16800371 1129890 1297270..1297803 1 NC_003212.1 lin1303; hypothetical protein 1297803 1129890 lin1303 Listeria innocua Clip11262 hypothetical protein NP_470639.1 1297270 D 272626 CDS NP_470640.1 16800372 1129891 1297819..1298484 1 NC_003212.1 weakly similar to oligopeptide ABC transporter AppA (binding protein); hypothetical protein 1298484 1129891 lin1304 Listeria innocua Clip11262 hypothetical protein NP_470640.1 1297819 D 272626 CDS NP_470641.1 16800373 1129892 1298740..1299678 1 NC_003212.1 lin1305; hypothetical protein 1299678 1129892 lin1305 Listeria innocua Clip11262 hypothetical protein NP_470641.1 1298740 D 272626 CDS NP_470642.1 16800374 1129893 1299793..1301076 1 NC_003212.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1301076 tig 1129893 tig Listeria innocua Clip11262 trigger factor NP_470642.1 1299793 D 272626 CDS NP_470643.1 16800375 1129894 1301261..1302520 1 NC_003212.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1302520 clpX 1129894 clpX Listeria innocua Clip11262 ATP-dependent protease ATP-binding subunit ClpX NP_470643.1 1301261 D 272626 CDS NP_470644.1 16800376 1129895 1302640..1303206 1 NC_003212.1 similar to type-I signal peptidase; hypothetical protein 1303206 1129895 lin1308 Listeria innocua Clip11262 hypothetical protein NP_470644.1 1302640 D 272626 CDS NP_470645.1 16800377 1129896 1303242..1303811 1 NC_003212.1 similar to signal peptidase I; hypothetical protein 1303811 1129896 lin1309 Listeria innocua Clip11262 hypothetical protein NP_470645.1 1303242 D 272626 CDS NP_470646.1 16800378 1129897 1303914..1304456 1 NC_003212.1 similar to signal peptidase I; hypothetical protein 1304456 1129897 lin1310 Listeria innocua Clip11262 hypothetical protein NP_470646.1 1303914 D 272626 CDS NP_470647.1 16800379 1129898 1304466..1305329 1 NC_003212.1 conserved hypothetical protein similar to Bacillus subtilis YlqF protein; essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1305329 rbgA 1129898 rbgA Listeria innocua Clip11262 ribosomal biogenesis GTPase NP_470647.1 1304466 D 272626 CDS NP_470648.1 16800380 1129900 1305326..1306111 1 NC_003212.1 similar to ribonuclease H rnh; RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1306111 rnhB 1129900 rnhB Listeria innocua Clip11262 ribonuclease HII NP_470648.1 1305326 D 272626 CDS NP_470649.1 16800381 1129901 1306246..1307106 1 NC_003212.1 similar to polypeptide deformylase, similar to Bacillus subtilis Smf protein; hypothetical protein 1307106 1129901 lin1313 Listeria innocua Clip11262 hypothetical protein NP_470649.1 1306246 D 272626 CDS NP_470650.1 16800382 1129902 1307376..1309454 1 NC_003212.1 highly similar to DNA topoisomerase I TopA; catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1309454 1129902 lin1314 Listeria innocua Clip11262 DNA topoisomerase I NP_470650.1 1307376 D 272626 CDS NP_470651.1 16800383 1129903 1309518..1310822 1 NC_003212.1 similar glucose inhibited division protein A; TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1310822 1129903 lin1315 Listeria innocua Clip11262 tRNA (uracil-5-)-methyltransferase Gid NP_470651.1 1309518 D 272626 CDS NP_470652.1 16800384 1129904 1311106..1312008 1 NC_003212.1 similar to integrase/recombinase; hypothetical protein 1312008 1129904 lin1316 Listeria innocua Clip11262 hypothetical protein NP_470652.1 1311106 D 272626 CDS NP_470653.1 16800385 1129905 1312030..1312569 1 NC_003212.1 highly similar to beta-type subunit of the 20S proteasome; heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1312569 1129905 lin1317 Listeria innocua Clip11262 ATP-dependent protease peptidase subunit NP_470653.1 1312030 D 272626 CDS NP_470654.1 16800386 1129906 1312583..1313992 1 NC_003212.1 highly similar to ATP-dependent Clp protease-like proteins; heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1313992 hslU 1129906 hslU Listeria innocua Clip11262 ATP-dependent protease ATP-binding subunit HslU NP_470654.1 1312583 D 272626 CDS NP_470655.1 16800387 1129907 1314013..1314792 1 NC_003212.1 highly similar to Bacillus subtilis CodY protein; CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1314792 1129907 lin1319 Listeria innocua Clip11262 transcriptional repressor CodY NP_470655.1 1314013 D 272626 CDS NP_470656.1 16800388 1129908 1314946..1315314 1 NC_003212.1 similar to Bacillus subtilis YneP protein; hypothetical protein 1315314 1129908 lin1320 Listeria innocua Clip11262 hypothetical protein NP_470656.1 1314946 D 272626 CDS NP_470657.1 16800389 1129909 1315337..1315648 1 NC_003212.1 similar to Bacillus subtilis YneQ protein; hypothetical protein 1315648 1129909 lin1321 Listeria innocua Clip11262 hypothetical protein NP_470657.1 1315337 D 272626 CDS NP_470658.1 16800390 1129911 1315651..1316523 1 NC_003212.1 similar to Lactococcus lactis LacX protein; hypothetical protein 1316523 1129911 lin1322 Listeria innocua Clip11262 hypothetical protein NP_470658.1 1315651 D 272626 CDS NP_470659.1 16800391 1129912 complement(1316566..1317162) 1 NC_003212.1 conserved hypothetical protein, similar to Bacillus subtilis YneS protein; hypothetical protein 1317162 1129912 lin1323 Listeria innocua Clip11262 hypothetical protein NP_470659.1 1316566 R 272626 CDS NP_470660.1 16800392 1129913 1317320..1317730 1 NC_003212.1 conserved hypothetical protein, similar to Bacillus subtilis YneT protein; hypothetical protein 1317730 1129913 lin1324 Listeria innocua Clip11262 hypothetical protein NP_470660.1 1317320 D 272626 CDS NP_470661.1 16800393 1129914 1317906..1319873 1 NC_003212.1 highly similar to DNA gyrase-like protein (subunit B); decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1319873 1129914 lin1325 Listeria innocua Clip11262 DNA topoisomerase IV subunit B NP_470661.1 1317906 D 272626 CDS NP_470662.1 16800394 1129916 1319870..1322326 1 NC_003212.1 highly similar to DNA gyrase-like protein (subunit A); decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1322326 1129916 lin1326 Listeria innocua Clip11262 DNA topoisomerase IV subunit A NP_470662.1 1319870 D 272626 CDS NP_470663.1 16800395 1129917 1322407..1322874 1 NC_003212.1 S-ribosylhomocysteine lyase; catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1322874 1129917 lin1327 Listeria innocua Clip11262 S-ribosylhomocysteinase NP_470663.1 1322407 D 272626 CDS NP_470664.1 16800396 1129918 1323226..1325088 1 NC_003212.1 internalin-like protein 1325088 1129918 lin1328 Listeria innocua Clip11262 internalin-like protein NP_470664.1 1323226 D 272626 CDS NP_470665.1 16800397 1129919 complement(1325196..1327097) 1 NC_003212.1 similar to acyltransferase (to Bacillus subtilis YrhL protein); hypothetical protein 1327097 1129919 lin1329 Listeria innocua Clip11262 hypothetical protein NP_470665.1 1325196 R 272626 CDS NP_470666.1 16800398 1129920 1327306..1328013 1 NC_003212.1 similar to glycerophosphodiester phosphodiesterase; hypothetical protein 1328013 1129920 lin1330 Listeria innocua Clip11262 hypothetical protein NP_470666.1 1327306 D 272626 CDS NP_470667.1 16800399 1129921 1328237..1329913 1 NC_003212.1 similar to glycerol 3 phosphate dehydrogenase; hypothetical protein 1329913 1129921 lin1331 Listeria innocua Clip11262 hypothetical protein NP_470667.1 1328237 D 272626 CDS NP_470668.1 16800400 1129922 1330038..1330955 1 NC_003212.1 similar to tRNA isopentenylpyrophosphate transferase; IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1330955 miaA 1129922 miaA Listeria innocua Clip11262 tRNA delta(2)-isopentenylpyrophosphate transferase NP_470668.1 1330038 D 272626 CDS NP_470669.1 16800401 1129923 1331077..1331310 1 NC_003212.1 similar to host factor-1 protein; hypothetical protein 1331310 1129923 lin1333 Listeria innocua Clip11262 hypothetical protein NP_470669.1 1331077 D 272626 CDS NP_470670.1 16800402 1129924 1331418..1332641 1 NC_003212.1 conserved hypothetical protein similar to Bacillus subtilis YnbA protein; hypothetical protein 1332641 1129924 lin1334 Listeria innocua Clip11262 hypothetical protein NP_470670.1 1331418 D 272626 CDS NP_470671.1 16800403 1129926 1332634..1333860 1 NC_003212.1 similar to aluminum resistance protein and to Bacillus subtilis YnbB protein (hypothetical); hypothetical protein 1333860 1129926 lin1335 Listeria innocua Clip11262 hypothetical protein NP_470671.1 1332634 D 272626 CDS NP_470672.1 16800404 1129927 1334062..1334430 1 NC_003212.1 similar to glutamine synthetase repressor; hypothetical protein 1334430 1129927 lin1336 Listeria innocua Clip11262 hypothetical protein NP_470672.1 1334062 D 272626 CDS NP_470673.1 16800405 1129928 1334501..1335835 1 NC_003212.1 highly similar to glutamine synthetases; hypothetical protein 1335835 1129928 lin1337 Listeria innocua Clip11262 hypothetical protein NP_470673.1 1334501 D 272626 CDS NP_470674.1 16800406 1129929 1335978..1337273 1 NC_003212.1 similar to arsenic efflux pump protein; hypothetical protein 1337273 1129929 lin1338 Listeria innocua Clip11262 hypothetical protein NP_470674.1 1335978 D 272626 CDS NP_470675.1 16800407 1129930 complement(1337307..1337828) 1 NC_003212.1 hypothetical protein 1337828 1129930 lin1339 Listeria innocua Clip11262 hypothetical protein NP_470675.1 1337307 R 272626 CDS NP_470676.1 16800408 1129931 complement(1337858..1338472) 1 NC_003212.1 highly similar to SOS response regulator lexA, transcription repressor protein; Represses a number of genes involved in the response to DNA damage; LexA repressor 1338472 1129931 lin1340 Listeria innocua Clip11262 LexA repressor NP_470676.1 1337858 R 272626 CDS NP_470677.1 16800409 1129932 1338630..1338959 1 NC_003212.1 similar to Bacillus subtilis YneA protein; cell division suppressor protein YneA 1338959 1129932 lin1341 Listeria innocua Clip11262 cell division suppressor protein YneA NP_470677.1 1338630 D 272626 CDS NP_470678.1 16800410 1129933 1339052..1339279 1 NC_003212.1 similar to Bacillus subtilis YnzC protein; hypothetical protein 1339279 1129933 lin1342 Listeria innocua Clip11262 hypothetical protein NP_470678.1 1339052 D 272626 CDS NP_470679.1 16800411 1129934 1339426..1341420 1 NC_003212.1 highly similar to transketolase; hypothetical protein 1341420 1129934 lin1343 Listeria innocua Clip11262 hypothetical protein NP_470679.1 1339426 D 272626 CDS NP_470680.1 16800412 1129935 1341643..1341882 1 NC_003212.1 highly similar to Bacillus subtilis YneF protein; hypothetical protein 1341882 1129935 lin1344 Listeria innocua Clip11262 hypothetical protein NP_470680.1 1341643 D 272626 CDS NP_470681.1 16800413 1129936 complement(1341933..1342664) 1 NC_003212.1 weakly similar to arginine N-methyltransferases; hypothetical protein 1342664 1129936 lin1345 Listeria innocua Clip11262 hypothetical protein NP_470681.1 1341933 R 272626 CDS NP_470682.1 16800414 1129937 complement(1342687..1343193) 1 NC_003212.1 similar to Escherichia coli YbdM protein; hypothetical protein 1343193 1129937 lin1346 Listeria innocua Clip11262 hypothetical protein NP_470682.1 1342687 R 272626 CDS NP_470683.1 16800415 1129938 complement(1343203..1344507) 1 NC_003212.1 similar to Escherichia coli YbdN protein; hypothetical protein 1344507 1129938 lin1347 Listeria innocua Clip11262 hypothetical protein NP_470683.1 1343203 R 272626 CDS NP_470684.1 16800416 1129939 complement(1344497..1345696) 1 NC_003212.1 lin1348; hypothetical protein 1345696 1129939 lin1348 Listeria innocua Clip11262 hypothetical protein NP_470684.1 1344497 R 272626 CDS NP_470685.1 16800417 1129941 complement(1345653..1346084) 1 NC_003212.1 lin1349; hypothetical protein 1346084 1129941 lin1349 Listeria innocua Clip11262 hypothetical protein NP_470685.1 1345653 R 272626 CDS NP_470686.1 16800418 1129942 1346366..1347094 1 NC_003212.1 highly similar to uridylate kinases; Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1347094 pyrH 1129942 pyrH Listeria innocua Clip11262 uridylate kinase NP_470686.1 1346366 D 272626 CDS NP_470687.1 16800419 1129943 1347094..1347651 1 NC_003212.1 highly similar to ribosome recycling factors; Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1347651 frr 1129943 frr Listeria innocua Clip11262 ribosome recycling factor NP_470687.1 1347094 D 272626 CDS NP_470688.1 16800420 1129944 1347881..1348639 1 NC_003212.1 similar to undecaprenyl diphosphate synthase; catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1348639 1129944 lin1352 Listeria innocua Clip11262 undecaprenyl pyrophosphate synthase NP_470688.1 1347881 D 272626 CDS NP_470689.1 16800421 1129945 1348653..1349441 1 NC_003212.1 similar to phosphatidate cytidylyltransferase (CDP-diglyceride synthase); hypothetical protein 1349441 1129945 lin1353 Listeria innocua Clip11262 hypothetical protein NP_470689.1 1348653 D 272626 CDS NP_470690.1 16800422 1129946 1349456..1350598 1 NC_003212.1 similar to deoxyxylulose 5-phosphate reductoisomerase; catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1350598 1129946 lin1354 Listeria innocua Clip11262 1-deoxy-D-xylulose 5-phosphate reductoisomerase NP_470690.1 1349456 D 272626 CDS NP_470691.1 16800423 1129947 1350612..1351874 1 NC_003212.1 Putative zinc metalloprotease Lin1355; hypothetical protein 1351874 1129947 lin1355 Listeria innocua Clip11262 hypothetical protein NP_470691.1 1350612 D 272626 CDS NP_470692.1 16800424 1129948 1351914..1353620 1 NC_003212.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1353620 proS 1129948 proS Listeria innocua Clip11262 prolyl-tRNA synthetase NP_470692.1 1351914 D 272626 CDS NP_470693.1 16800425 1129949 1353726..1358060 1 NC_003212.1 highly similar to DNA polymerase III (alpha subunit); catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1358060 polC 1129949 polC Listeria innocua Clip11262 DNA polymerase III PolC NP_470693.1 1353726 D 272626 CDS NP_470694.1 16800426 1129950 1358242..1358709 1 NC_003212.1 conserved hypothetical protein, similar to Bacillus subtilis YlxS protein; in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1358709 1129950 lin1358 Listeria innocua Clip11262 hypothetical protein NP_470694.1 1358242 D 272626 CDS NP_470695.1 16800427 1129951 1358739..1359857 1 NC_003212.1 highly similar to N utilization substance protein A (NusA protein); modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1359857 nusA 1129951 nusA Listeria innocua Clip11262 transcription elongation factor NusA NP_470695.1 1358739 D 272626 CDS NP_470696.1 16800428 1129952 1359872..1360156 1 NC_003212.1 similar to Bacillus subtilis YlxR protein; hypothetical protein 1360156 1129952 lin1360 Listeria innocua Clip11262 hypothetical protein NP_470696.1 1359872 D 272626 CDS NP_470697.1 16800429 1129954 1360149..1360448 1 NC_003212.1 conserved hypothetical protein, similar to Bacillus subtilis YlxQ protein; hypothetical protein 1360448 1129954 lin1361 Listeria innocua Clip11262 hypothetical protein NP_470697.1 1360149 D 272626 CDS NP_470698.1 16800430 1129955 1360471..1362819 1 NC_003212.1 highly similar to translation initiation factor IF-2; Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1362819 infB 1129955 infB Listeria innocua Clip11262 translation initiation factor IF-2 NP_470698.1 1360471 D 272626 CDS NP_470699.1 16800431 1129956 1362816..1363094 1 NC_003212.1 conserved hypothetical protein similar to Bacillus subtilis YlxP protein; hypothetical protein 1363094 1129956 lin1363 Listeria innocua Clip11262 hypothetical protein NP_470699.1 1362816 D 272626 CDS NP_470700.1 16800432 1129957 1363110..1363454 1 NC_003212.1 highly similar to ribosome-binding factor A; associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1363454 rbfA 1129957 rbfA Listeria innocua Clip11262 ribosome-binding factor A NP_470700.1 1363110 D 272626 CDS NP_470701.1 16800433 1129958 1363551..1364465 1 NC_003212.1 highly similar to tRNA pseudouridine 55 synthase; catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1364465 truB 1129958 truB Listeria innocua Clip11262 tRNA pseudouridine synthase B NP_470701.1 1363551 D 272626 CDS NP_470702.1 16800434 1129959 1364536..1365480 1 NC_003212.1 highly similar to riboflavin kinase and FAD synthase; hypothetical protein 1365480 1129959 lin1366 Listeria innocua Clip11262 hypothetical protein NP_470702.1 1364536 D 272626 CDS NP_470703.1 16800435 1129960 1365617..1365886 1 NC_003212.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1365886 rpsO 1129960 rpsO Listeria innocua Clip11262 30S ribosomal protein S15 NP_470703.1 1365617 D 272626 CDS NP_470704.1 16800436 1129961 1366134..1368305 1 NC_003212.1 polynucleotide phosphorylase/polyadenylase 1368305 pnpA 1129961 pnpA Listeria innocua Clip11262 polynucleotide phosphorylase/polyadenylase NP_470704.1 1366134 D 272626 CDS NP_470705.1 16800437 1129962 complement(1368349..1369389) 1 NC_003212.1 Probable GTPase engC 2; hypothetical protein 1369389 1129962 lin1369 Listeria innocua Clip11262 hypothetical protein NP_470705.1 1368349 R 272626 CDS NP_470706.1 16800438 1129963 complement(1369553..1370032) 1 NC_003212.1 similar to Bacillus subtilis YqzC protein; hypothetical protein 1370032 1129963 lin1370 Listeria innocua Clip11262 hypothetical protein NP_470706.1 1369553 R 272626 CDS NP_470707.1 16800439 1129964 complement(1370060..1370416) 1 NC_003212.1 similar to Bacillus subtilis YqzD protein; hypothetical protein 1370416 1129964 lin1371 Listeria innocua Clip11262 hypothetical protein NP_470707.1 1370060 R 272626 CDS NP_470708.1 16800440 1129965 1370614..1370763 1 NC_003212.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1370763 rpmG 1129965 rpmG Listeria innocua Clip11262 50S ribosomal protein L33 NP_470708.1 1370614 D 272626 CDS NP_470709.1 16800441 1129966 1370819..1371358 1 NC_003212.1 similar to 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein 1371358 1129966 lin1373 Listeria innocua Clip11262 hypothetical protein NP_470709.1 1370819 D 272626 CDS NP_470710.1 16800442 1129967 1371457..1372995 1 NC_003212.1 similar to Bacillus subtilis yqgP; hypothetical protein 1372995 1129967 lin1374 Listeria innocua Clip11262 hypothetical protein NP_470710.1 1371457 D 272626 CDS NP_470711.1 16800443 1129968 1373008..1373220 1 NC_003212.1 similar to Bacillus subtilis yqgQ; hypothetical protein 1373220 1129968 lin1375 Listeria innocua Clip11262 hypothetical protein NP_470711.1 1373008 D 272626 CDS NP_470712.1 16800444 1129969 1373245..1374213 1 NC_003212.1 similar to glucose kinase; hypothetical protein 1374213 1129969 lin1376 Listeria innocua Clip11262 hypothetical protein NP_470712.1 1373245 D 272626 CDS NP_470713.1 16800445 1129970 1374384..1375436 1 NC_003212.1 similar to Bacillus subtilis YqgU protein; hypothetical protein 1375436 1129970 lin1377 Listeria innocua Clip11262 hypothetical protein NP_470713.1 1374384 D 272626 CDS NP_470714.1 16800446 1129971 complement(1375452..1375769) 1 NC_003212.1 weakly similar to Bacillus subtilis comG operon protein 7 (comGG); hypothetical protein 1375769 1129971 lin1378 Listeria innocua Clip11262 hypothetical protein NP_470714.1 1375452 R 272626 CDS NP_470715.1 16800447 1129972 complement(1375769..1376233) 1 NC_003212.1 similar to Bacillus subtilis comG operon protein 6; hypothetical protein 1376233 1129972 lin1379 Listeria innocua Clip11262 hypothetical protein NP_470715.1 1375769 R 272626 CDS NP_470716.1 16800448 1129973 complement(1376196..1376480) 1 NC_003212.1 similar to comG operon protein 5 (comGE); hypothetical protein 1376480 1129973 lin1380 Listeria innocua Clip11262 hypothetical protein NP_470716.1 1376196 R 272626 CDS NP_470717.1 16800449 1129975 complement(1376473..1376895) 1 NC_003212.1 similar to comG operon protein 4 (comGD); hypothetical protein 1376895 1129975 lin1381 Listeria innocua Clip11262 hypothetical protein NP_470717.1 1376473 R 272626 CDS NP_470718.1 16800450 1129977 complement(1376892..1377215) 1 NC_003212.1 similar to Bacillus subtilis comG operon protein 3; hypothetical protein 1377215 1129977 lin1382 Listeria innocua Clip11262 hypothetical protein NP_470718.1 1376892 R 272626 CDS NP_470719.1 16800451 1129978 complement(1377229..1378260) 1 NC_003212.1 similar to Bacillus subtilis comG operon protein 2; hypothetical protein 1378260 1129978 lin1383 Listeria innocua Clip11262 hypothetical protein NP_470719.1 1377229 R 272626 CDS NP_470720.1 16800452 1129979 complement(1378238..1379260) 1 NC_003212.1 similar to Bacillus subtilis comG operon protein 1; hypothetical protein 1379260 1129979 lin1384 Listeria innocua Clip11262 hypothetical protein NP_470720.1 1378238 R 272626 CDS NP_470721.1 16800453 1129981 1379801..1380889 1 NC_003212.1 similar to aminomethyltransferase; catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1380889 gcvT 1129981 gcvT Listeria innocua Clip11262 glycine cleavage system aminomethyltransferase T NP_470721.1 1379801 D 272626 CDS NP_470722.1 16800454 1129982 1380905..1382251 1 NC_003212.1 similar to glycine dehydrogenase (decarboxylating) subunit 1; acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1382251 1129982 lin1386 Listeria innocua Clip11262 glycine dehydrogenase subunit 1 NP_470722.1 1380905 D 272626 CDS NP_470723.1 16800455 1129983 1382248..1383714 1 NC_003212.1 similar to glycine dehydrogenase (decarboxylating) subunit 2; acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1383714 1129983 lin1387 Listeria innocua Clip11262 glycine dehydrogenase subunit 2 NP_470723.1 1382248 D 272626 CDS NP_470724.1 16800456 1129984 complement(1383755..1384135) 1 NC_003212.1 lin1388; hypothetical protein 1384135 1129984 lin1388 Listeria innocua Clip11262 hypothetical protein NP_470724.1 1383755 R 272626 CDS NP_470725.1 16800457 1129985 complement(1384197..1384469) 1 NC_003212.1 lin1389; hypothetical protein 1384469 1129985 lin1389 Listeria innocua Clip11262 hypothetical protein NP_470725.1 1384197 R 272626 CDS NP_470726.1 16800458 1129986 complement(1384483..1385448) 1 NC_003212.1 similar to Bacillus subtilis YqhQ protein; hypothetical protein 1385448 1129986 lin1390 Listeria innocua Clip11262 hypothetical protein NP_470726.1 1384483 R 272626 CDS NP_470727.1 16800459 1129987 1385628..1386689 1 NC_003212.1 similar to aminopeptidase P; hypothetical protein 1386689 1129987 lin1391 Listeria innocua Clip11262 hypothetical protein NP_470727.1 1385628 D 272626 CDS NP_470728.1 16800460 1129988 1386792..1387349 1 NC_003212.1 highly similar to elongation factor P (EF-P); Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1387349 1129988 lin1392 Listeria innocua Clip11262 elongation factor P NP_470728.1 1386792 D 272626 CDS NP_470729.1 16800461 1129989 1387509..1387979 1 NC_003212.1 similar to acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit); hypothetical protein 1387979 1129989 lin1393 Listeria innocua Clip11262 hypothetical protein NP_470729.1 1387509 D 272626 CDS NP_470730.1 16800462 1129990 1387993..1389357 1 NC_003212.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 1389357 1129990 lin1394 Listeria innocua Clip11262 acetyl-CoA carboxylase biotin carboxylase subunit NP_470730.1 1387993 D 272626 CDS NP_470731.1 16800463 1129991 1389360..1389767 1 NC_003212.1 similar to Bacillus subtilis YqhY protein; hypothetical protein 1389767 1129991 lin1395 Listeria innocua Clip11262 hypothetical protein NP_470731.1 1389360 D 272626 CDS NP_470732.1 16800464 1129992 1389798..1390184 1 NC_003212.1 similar to transcription termination protein (NusB); Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1390184 nusB 1129992 nusB Listeria innocua Clip11262 transcription antitermination protein NusB NP_470732.1 1389798 D 272626 CDS NP_470733.1 16800465 1129993 1390276..1391130 1 NC_003212.1 highly similar to methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase; catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1391130 1129993 lin1397 Listeria innocua Clip11262 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_470733.1 1390276 D 272626 CDS NP_470734.1 16800466 1129994 1391149..1392501 1 NC_003212.1 similar to exodeoxyribonuclease VII (large subunit); bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1392501 xseA 1129994 xseA Listeria innocua Clip11262 exodeoxyribonuclease VII large subunit NP_470734.1 1391149 D 272626 CDS NP_470735.1 16800467 1129995 1392491..1392718 1 NC_003212.1 similar to exodeoxyribonuclease small subunit; catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1392718 1129995 lin1399 Listeria innocua Clip11262 exodeoxyribonuclease VII small subunit NP_470735.1 1392491 D 272626 CDS NP_470736.1 16800468 1129997 1392721..1393602 1 NC_003212.1 similar to geranyltranstransferase; hypothetical protein 1393602 1129997 lin1400 Listeria innocua Clip11262 hypothetical protein NP_470736.1 1392721 D 272626 CDS NP_470737.1 16800469 1129998 1393801..1394001 1 NC_003212.1 similar to cold shock protein; hypothetical protein 1394001 1129998 lin1401 Listeria innocua Clip11262 hypothetical protein NP_470737.1 1393801 D 272626 CDS NP_470738.1 16800470 1129999 1394166..1396064 1 NC_003212.1 similar to D-1-deoxyxylulose 5-phosphate synthase; catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1396064 1129999 lin1402 Listeria innocua Clip11262 1-deoxy-D-xylulose-5-phosphate synthase NP_470738.1 1394166 D 272626 CDS NP_470739.1 16800471 1130000 1396083..1396907 1 NC_003212.1 hypothetical protein 1396907 1130000 lin1403 Listeria innocua Clip11262 hypothetical protein NP_470739.1 1396083 D 272626 CDS NP_470740.1 16800472 1130001 1397098..1397547 1 NC_003212.1 similar to arginine repressor; regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1397547 1130001 lin1404 Listeria innocua Clip11262 arginine repressor NP_470740.1 1397098 D 272626 CDS NP_470741.1 16800473 1130002 1397570..1399261 1 NC_003212.1 DNA repair and genetic recombination 1399261 recN 1130002 recN Listeria innocua Clip11262 DNA repair and genetic recombination NP_470741.1 1397570 D 272626 CDS NP_470742.1 16800474 1130003 1399391..1400257 1 NC_003212.1 similar to phosphotransbutyrylase; hypothetical protein 1400257 1130003 lin1406 Listeria innocua Clip11262 hypothetical protein NP_470742.1 1399391 D 272626 CDS NP_470743.1 16800475 1130004 1400394..1401461 1 NC_003212.1 similar to branched-chain fatty-acid kinase; catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 1401461 1130004 lin1407 Listeria innocua Clip11262 butyrate kinase NP_470743.1 1400394 D 272626 CDS NP_470744.1 16800476 1130005 1401475..1402902 1 NC_003212.1 similar to branched-chain alpha-keto acid dehydrogenase E3 subunit; E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1402902 1130005 lin1408 Listeria innocua Clip11262 dihydrolipoamide dehydrogenase NP_470744.1 1401475 D 272626 CDS NP_470745.1 16800477 1130006 1402927..1403922 1 NC_003212.1 similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit); hypothetical protein 1403922 1130006 lin1409 Listeria innocua Clip11262 hypothetical protein NP_470745.1 1402927 D 272626 CDS NP_470746.1 16800478 1130007 1403939..1404922 1 NC_003212.1 similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit); BfmBAB 1404922 1130007 lin1410 Listeria innocua Clip11262 BfmBAB NP_470746.1 1403939 D 272626 CDS NP_470747.1 16800479 1130008 1404953..1406203 1 NC_003212.1 similar to branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase); hypothetical protein 1406203 1130008 lin1411 Listeria innocua Clip11262 hypothetical protein NP_470747.1 1404953 D 272626 CDS NP_470748.1 16800480 1130009 1406578..1407672 1 NC_003212.1 similar to aminotripeptidase; hypothetical protein 1407672 1130009 lin1412 Listeria innocua Clip11262 hypothetical protein NP_470748.1 1406578 D 272626 CDS NP_470749.1 16800481 1130010 1407817..1409235 1 NC_003212.1 similar to 6-phosphogluconate dehydrogenase; catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1409235 1130010 lin1413 Listeria innocua Clip11262 6-phosphogluconate dehydrogenase NP_470749.1 1407817 D 272626 CDS NP_470750.1 16800482 1130011 1409425..1410105 1 NC_003212.1 two-component response regulator 1410105 lisR 1130011 lisR Listeria innocua Clip11262 two-component response regulator NP_470750.1 1409425 D 272626 CDS NP_470751.1 16800483 1130012 1410102..1411553 1 NC_003212.1 two-component sensor histidine kinase 1411553 lisK 1130012 lisK Listeria innocua Clip11262 two-component sensor histidine kinase NP_470751.1 1410102 D 272626 CDS NP_470752.1 16800484 1130013 complement(1411590..1412417) 1 NC_003212.1 similar to Bacillus subtilis SpoIIIJ protein; involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; OxaA-like protein precursor 1412417 1130013 lin1416 Listeria innocua Clip11262 OxaA-like protein precursor NP_470752.1 1411590 R 272626 CDS NP_470753.1 16800485 1130014 complement(1412454..1412735) 1 NC_003212.1 lin1417; hypothetical protein 1412735 1130014 lin1417 Listeria innocua Clip11262 hypothetical protein NP_470753.1 1412454 R 272626 CDS NP_470754.1 16800486 1130015 complement(1412821..1413102) 1 NC_003212.1 lin1418; catalyzes the hydrolysis of acylphosphate; acylphosphatase 1413102 1130015 lin1418 Listeria innocua Clip11262 acylphosphatase NP_470754.1 1412821 R 272626 CDS NP_470755.1 16800487 1130016 1413242..1413589 1 NC_003212.1 lin1419; hypothetical protein 1413589 1130016 lin1419 Listeria innocua Clip11262 hypothetical protein NP_470755.1 1413242 D 272626 CDS NP_470756.1 16800488 1130017 1413629..1414705 1 NC_003212.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1414705 1130017 lin1420 Listeria innocua Clip11262 isopentenyl pyrophosphate isomerase NP_470756.1 1413629 D 272626 CDS NP_470757.1 16800489 1130018 complement(1414747..1415706) 1 NC_003212.1 hypothetical protein 1415706 1130018 lin1421 Listeria innocua Clip11262 hypothetical protein NP_470757.1 1414747 R 272626 CDS NP_470758.1 16800490 1130019 1415958..1416884 1 NC_003212.1 hypothetical protein 1416884 1130019 lin1422 Listeria innocua Clip11262 hypothetical protein NP_470758.1 1415958 D 272626 CDS NP_470759.1 16800491 1130020 1417035..1419323 1 NC_003212.1 similar to DNA translocase; hypothetical protein 1419323 1130020 lin1423 Listeria innocua Clip11262 hypothetical protein NP_470759.1 1417035 D 272626 CDS NP_470760.1 16800492 1130021 complement(1419362..1420201) 1 NC_003212.1 similar to pyrroline-5-carboxylate reductase; catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1420201 1130021 lin1424 Listeria innocua Clip11262 pyrroline-5-carboxylate reductase NP_470760.1 1419362 R 272626 CDS NP_470761.1 16800493 1130022 1420555..1421628 1 NC_003212.1 CD4+ T cell-stimulating antigen, lipoprotein 1421628 tcsA 1130022 tcsA Listeria innocua Clip11262 CD4+ T cell-stimulating antigen, lipoprotein NP_470761.1 1420555 D 272626 CDS NP_470762.1 16800494 1130023 1422062..1423603 1 NC_003212.1 similar to sugar ABC transporter, ATP-binding protein; hypothetical protein 1423603 1130023 lin1426 Listeria innocua Clip11262 hypothetical protein NP_470762.1 1422062 D 272626 CDS NP_470763.1 16800495 1130025 1423596..1424648 1 NC_003212.1 similar to ABC transporter (permease proteins); hypothetical protein 1424648 1130025 lin1427 Listeria innocua Clip11262 hypothetical protein NP_470763.1 1423596 D 272626 CDS NP_470764.1 16800496 1130027 1424645..1425595 1 NC_003212.1 similar to sugar ABC transporter, permease protein; hypothetical protein 1425595 1130027 lin1428 Listeria innocua Clip11262 hypothetical protein NP_470764.1 1424645 D 272626 CDS NP_470765.1 16800497 1130028 1425713..1427005 1 NC_003212.1 similar to putative proteases; hypothetical protein 1427005 1130028 lin1429 Listeria innocua Clip11262 hypothetical protein NP_470765.1 1425713 D 272626 CDS NP_470766.1 16800498 1130030 1426986..1428272 1 NC_003212.1 similar to putative protease; hypothetical protein 1428272 1130030 lin1430 Listeria innocua Clip11262 hypothetical protein NP_470766.1 1426986 D 272626 CDS NP_470767.1 16800499 1130031 1428372..1429103 1 NC_003212.1 similar to 3-ketoacyl-acyl carrier protein reductase; hypothetical protein 1429103 1130031 lin1431 Listeria innocua Clip11262 hypothetical protein NP_470767.1 1428372 D 272626 CDS NP_470768.1 16800500 1130032 1429152..1430087 1 NC_003212.1 hypothetical protein 1430087 1130032 lin1432 Listeria innocua Clip11262 hypothetical protein NP_470768.1 1429152 D 272626 CDS NP_470769.1 16800501 1130033 1430177..1430755 1 NC_003212.1 similar to phosphatidylglycerophosphate synthase; hypothetical protein 1430755 1130033 lin1433 Listeria innocua Clip11262 hypothetical protein NP_470769.1 1430177 D 272626 CDS NP_470770.1 16800502 1130034 1430822..1432069 1 NC_003212.1 similar to competence-damage inducible protein CinA; competence damage-inducible protein A 1432069 1130034 lin1434 Listeria innocua Clip11262 competence damage-inducible protein A NP_470770.1 1430822 D 272626 CDS NP_470771.1 16800503 1130035 1432339..1433385 1 NC_003212.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1433385 recA 1130035 recA Listeria innocua Clip11262 recombinase A NP_470771.1 1432339 D 272626 CDS NP_470772.1 16800504 1130036 1433686..1435248 1 NC_003212.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1435248 1130036 lin1436 Listeria innocua Clip11262 phosphodiesterase NP_470772.1 1433686 D 272626 CDS NP_470773.1 16800505 1130037 1435364..1435861 1 NC_003212.1 similar to N-acetyltransferase; hypothetical protein 1435861 1130037 lin1437 Listeria innocua Clip11262 hypothetical protein NP_470773.1 1435364 D 272626 CDS NP_470774.1 16800506 1130039 1435866..1436669 1 NC_003212.1 hypothetical protein 1436669 1130039 lin1438 Listeria innocua Clip11262 hypothetical protein NP_470774.1 1435866 D 272626 CDS NP_470775.1 16800507 1130040 1436686..1437048 1 NC_003212.1 similar to Bacillus subtilis YmcA protein; hypothetical protein 1437048 1130040 lin1439 Listeria innocua Clip11262 hypothetical protein NP_470775.1 1436686 D 272626 CDS NP_470776.1 16800508 1130041 1437158..1439740 1 NC_003212.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1439740 mutS 1130041 mutS Listeria innocua Clip11262 DNA mismatch repair protein MutS NP_470776.1 1437158 D 272626 CDS NP_470777.1 16800509 1130042 1439760..1441571 1 NC_003212.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1441571 mutL 1130042 mutL Listeria innocua Clip11262 DNA mismatch repair protein NP_470777.1 1439760 D 272626 CDS NP_470778.1 16800510 1130043 1441591..1442139 1 NC_003212.1 similar to putative anti-terminator regulatory protein; hypothetical protein 1442139 1130043 lin1442 Listeria innocua Clip11262 hypothetical protein NP_470778.1 1441591 D 272626 CDS NP_470779.1 16800511 1130044 1442565..1444796 1 NC_003212.1 pyruvate formate-lyase 1444796 pflB 1130044 pflB Listeria innocua Clip11262 pyruvate formate-lyase NP_470779.1 1442565 D 272626 CDS NP_470780.1 16800512 1130045 1444874..1445620 1 NC_003212.1 pyruvate-formate lyase activating enzyme 1445620 pflC 1130045 pflC Listeria innocua Clip11262 pyruvate-formate lyase activating enzyme NP_470780.1 1444874 D 272626 CDS NP_470781.1 16800513 1130046 complement(1445655..1446185) 1 NC_003212.1 hypothetical protein 1446185 1130046 lin1445 Listeria innocua Clip11262 hypothetical protein NP_470781.1 1445655 R 272626 CDS NP_470782.1 16800514 1130047 1446353..1447546 1 NC_003212.1 similar to multidrug-efflux transporter; hypothetical protein 1447546 1130047 lin1446 Listeria innocua Clip11262 hypothetical protein NP_470782.1 1446353 D 272626 CDS NP_470783.1 16800515 1130048 1447678..1448226 1 NC_003212.1 lin1447; hypothetical protein 1448226 1130048 lin1447 Listeria innocua Clip11262 hypothetical protein NP_470783.1 1447678 D 272626 CDS NP_470784.1 16800516 1130049 1448227..1448469 1 NC_003212.1 lin1448; hypothetical protein 1448469 1130049 lin1448 Listeria innocua Clip11262 hypothetical protein NP_470784.1 1448227 D 272626 CDS NP_470785.1 16800517 1130050 1448509..1449042 1 NC_003212.1 modulates DNA topology 1449042 1130050 lin1449 Listeria innocua Clip11262 modulates DNA topology NP_470785.1 1448509 D 272626 CDS NP_470786.1 16800518 1130051 complement(1449388..1449900) 1 NC_003212.1 lin1450; hypothetical protein 1449900 1130051 lin1450 Listeria innocua Clip11262 hypothetical protein NP_470786.1 1449388 R 272626 CDS NP_470787.1 16800519 1130052 complement(1449919..1451259) 1 NC_003212.1 lin1451; hypothetical protein 1451259 1130052 lin1451 Listeria innocua Clip11262 hypothetical protein NP_470787.1 1449919 R 272626 CDS NP_470788.1 16800520 1130053 complement(1451373..1451750) 1 NC_003212.1 lin1452; hypothetical protein 1451750 1130053 lin1452 Listeria innocua Clip11262 hypothetical protein NP_470788.1 1451373 R 272626 CDS NP_470789.1 16800521 1130054 complement(1451921..1453090) 1 NC_003212.1 similar to Acetyl-CoA:acetyltransferase; hypothetical protein 1453090 1130054 lin1453 Listeria innocua Clip11262 hypothetical protein NP_470789.1 1451921 R 272626 CDS NP_470790.1 16800522 1130055 1453240..1454406 1 NC_003212.1 similar to hydroxy-3-methylglutaryl coenzyme A synthase; hypothetical protein 1454406 1130055 lin1454 Listeria innocua Clip11262 hypothetical protein NP_470790.1 1453240 D 272626 CDS NP_470791.1 16800523 1130056 complement(1454433..1455032) 1 NC_003212.1 lin1455; hypothetical protein 1455032 1130056 lin1455 Listeria innocua Clip11262 hypothetical protein NP_470791.1 1454433 R 272626 CDS NP_470792.1 16800524 1130057 complement(1455102..1456346) 1 NC_003212.1 highly similar to Bacillus subtilis YxiO protein; hypothetical protein 1456346 1130057 lin1456 Listeria innocua Clip11262 hypothetical protein NP_470792.1 1455102 R 272626 CDS NP_470793.1 16800525 1130058 complement(1456365..1457633) 1 NC_003212.1 weakly similar to pyrophosphatase; hypothetical protein 1457633 1130058 lin1457 Listeria innocua Clip11262 hypothetical protein NP_470793.1 1456365 R 272626 CDS NP_470794.1 16800526 1130059 complement(1457696..1458733) 1 NC_003212.1 hypothetical protein 1458733 1130059 lin1458 Listeria innocua Clip11262 hypothetical protein NP_470794.1 1457696 R 272626 CDS NP_470795.1 16800527 1130060 complement(1458761..1459657) 1 NC_003212.1 weakly similar to UDP-N-acetylglucosaminyl-3-enolpyruvate reductase; catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1459657 murB 1130060 murB Listeria innocua Clip11262 UDP-N-acetylenolpyruvoylglucosamine reductase NP_470795.1 1458761 R 272626 CDS NP_470796.1 16800528 1130061 1459876..1460859 1 NC_003212.1 similar to glycine betaine/carnitine/choline ABC transporter (ATP-binding protein); hypothetical protein 1460859 1130061 lin1460 Listeria innocua Clip11262 hypothetical protein NP_470796.1 1459876 D 272626 CDS NP_470797.1 16800529 1130062 1460856..1462370 1 NC_003212.1 similar to glycine betaine/carnitine/choline ABC transporter (membrane protein); hypothetical protein 1462370 1130062 lin1461 Listeria innocua Clip11262 hypothetical protein NP_470797.1 1460856 D 272626 CDS NP_470798.1 16800530 1130063 complement(1462410..1463240) 1 NC_003212.1 lin1462; hypothetical protein 1463240 1130063 lin1462 Listeria innocua Clip11262 hypothetical protein NP_470798.1 1462410 R 272626 CDS NP_470799.1 16800531 1130064 complement(1463378..1464724) 1 NC_003212.1 similar to manganese transport proteins NRAMP; manganese transport protein MntH 1464724 1130064 lin1463 Listeria innocua Clip11262 manganese transport protein MntH NP_470799.1 1463378 R 272626 CDS NP_470800.1 16800532 1130065 complement(1464837..1465508) 1 NC_003212.1 similar to betaine/carnitine/choline ABC transporter (membrane p); hypothetical protein 1465508 1130065 lin1464 Listeria innocua Clip11262 hypothetical protein NP_470800.1 1464837 R 272626 CDS NP_470801.1 16800533 1130066 complement(1465523..1466449) 1 NC_003212.1 similar to glycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein); hypothetical protein 1466449 1130066 lin1465 Listeria innocua Clip11262 hypothetical protein NP_470801.1 1465523 R 272626 CDS NP_470802.1 16800534 1130067 complement(1466451..1467107) 1 NC_003212.1 similar to glycine betaine/carnitine/choline ABC transporter (membrane protein); hypothetical protein 1467107 1130067 lin1466 Listeria innocua Clip11262 hypothetical protein NP_470802.1 1466451 R 272626 CDS NP_470803.1 16800535 1130069 complement(1467111..1468304) 1 NC_003212.1 similar to glycine betaine/carnitine/choline ABC transporter (ATP-binding protein); hypothetical protein 1468304 1130069 lin1467 Listeria innocua Clip11262 hypothetical protein NP_470803.1 1467111 R 272626 CDS NP_470804.1 16800536 1130071 complement(1468598..1469158) 1 NC_003212.1 hypothetical protein 1469158 1130071 lin1468 Listeria innocua Clip11262 hypothetical protein NP_470804.1 1468598 R 272626 CDS NP_470805.1 16800537 1130072 complement(1469406..1469789) 1 NC_003212.1 hypothetical protein 1469789 1130072 lin1469 Listeria innocua Clip11262 hypothetical protein NP_470805.1 1469406 R 272626 CDS NP_470806.1 16800538 1130073 1469929..1471530 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 1471530 1130073 lin1470 Listeria innocua Clip11262 hypothetical protein NP_470806.1 1469929 D 272626 CDS NP_470807.1 16800539 1130075 complement(1471569..1472219) 1 NC_003212.1 lin1471; hypothetical protein 1472219 1130075 lin1471 Listeria innocua Clip11262 hypothetical protein NP_470807.1 1471569 R 272626 CDS NP_470808.1 16800540 1130076 complement(1472272..1473612) 1 NC_003212.1 similar to glutathione reductase; hypothetical protein 1473612 1130076 lin1472 Listeria innocua Clip11262 hypothetical protein NP_470808.1 1472272 R 272626 CDS NP_470809.1 16800541 1130077 complement(1473700..1475367) 1 NC_003212.1 hypothetical protein 1475367 1130077 lin1473 Listeria innocua Clip11262 hypothetical protein NP_470809.1 1473700 R 272626 CDS NP_470810.1 16800542 1130078 complement(1475387..1476268) 1 NC_003212.1 similar to dihydrodipicolinate synthase; catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1476268 dapA 1130078 dapA Listeria innocua Clip11262 dihydrodipicolinate synthase NP_470810.1 1475387 R 272626 CDS NP_470811.1 16800543 1130079 complement(1476283..1477494) 1 NC_003212.1 similar to aspartokinase I (alpha and beta subunits); catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 1477494 1130079 lin1475 Listeria innocua Clip11262 aspartate kinase I NP_470811.1 1476283 R 272626 CDS NP_470812.1 16800544 1130080 complement(1477506..1478549) 1 NC_003212.1 similar to aspartate-semialdehyde dehydrogenase; hypothetical protein 1478549 1130080 lin1476 Listeria innocua Clip11262 hypothetical protein NP_470812.1 1477506 R 272626 CDS NP_470813.1 16800545 1130081 complement(1478748..1480913) 1 NC_003212.1 similar to penicillin-binding protein; hypothetical protein 1480913 1130081 lin1477 Listeria innocua Clip11262 hypothetical protein NP_470813.1 1478748 R 272626 CDS NP_470814.1 16800546 1130082 complement(1481043..1481651) 1 NC_003212.1 superoxide dismutase 1481651 sod 1130082 sod Listeria innocua Clip11262 superoxide dismutase NP_470814.1 1481043 R 272626 CDS NP_470815.1 16800547 1130083 1481958..1482758 1 NC_003212.1 hypothetical protein 1482758 1130083 lin1479 Listeria innocua Clip11262 hypothetical protein NP_470815.1 1481958 D 272626 CDS NP_470816.1 16800548 1130084 1482973..1483680 1 NC_003212.1 similar to transport proteins; hypothetical protein 1483680 1130084 lin1480 Listeria innocua Clip11262 hypothetical protein NP_470816.1 1482973 D 272626 CDS NP_470817.1 16800549 1130086 1483671..1483997 1 NC_003212.1 lin1481; hypothetical protein 1483997 1130086 lin1481 Listeria innocua Clip11262 hypothetical protein NP_470817.1 1483671 D 272626 CDS NP_470818.1 16800550 1130087 complement(1484079..1484963) 1 NC_003212.1 similar to protein secretion PrsA (post-translocation molecular chaperone); hypothetical protein 1484963 1130087 lin1482 Listeria innocua Clip11262 hypothetical protein NP_470818.1 1484079 R 272626 CDS NP_470819.1 16800551 1130088 complement(1485101..1485526) 1 NC_003212.1 transcriptional regulator ZurR (ferric uptake regulation) 1485526 zurR 1130088 zurR Listeria innocua Clip11262 transcriptional regulator ZurR (ferric uptake regulation) NP_470819.1 1485101 R 272626 CDS NP_470820.1 16800552 1130089 complement(1485507..1486385) 1 NC_003212.1 metal (zinc) transport protein (ABC transporter, permease protein) 1486385 zurM 1130089 zurM Listeria innocua Clip11262 metal (zinc) transport protein (ABC transporter, permease protein) NP_470820.1 1485507 R 272626 CDS NP_470821.1 16800553 1130091 complement(1486360..1487133) 1 NC_003212.1 metal (zinc) transport protein(ABC transporter, ATP-binding protein) 1487133 zurA 1130091 zurA Listeria innocua Clip11262 metal (zinc) transport protein(ABC transporter, ATP-binding protein) NP_470821.1 1486360 R 272626 CDS NP_470822.1 16800554 1130093 complement(1487275..1488201) 1 NC_003212.1 Probable manganese-dependent inorganic pyrophosphatase; catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 1488201 1130093 lin1486 Listeria innocua Clip11262 putative manganese-dependent inorganic pyrophosphatase NP_470822.1 1487275 R 272626 CDS NP_470823.1 16800555 1130094 complement(1488218..1489111) 1 NC_003212.1 similar to endonuclease IV; Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1489111 1130094 lin1487 Listeria innocua Clip11262 endonuclease IV NP_470823.1 1488218 R 272626 CDS NP_470824.1 16800556 1130095 complement(1489127..1490434) 1 NC_003212.1 similar to ATP-dependent RNA helicase, DEAD-box family (deaD); hypothetical protein 1490434 1130095 lin1488 Listeria innocua Clip11262 hypothetical protein NP_470824.1 1489127 R 272626 CDS NP_470825.1 16800557 1130096 complement(1490613..1491734) 1 NC_003212.1 hypothetical protein 1491734 1130096 lin1489 Listeria innocua Clip11262 hypothetical protein NP_470825.1 1490613 R 272626 CDS NP_470826.1 16800558 1130097 complement(1491731..1492435) 1 NC_003212.1 hypothetical protein 1492435 1130097 lin1490 Listeria innocua Clip11262 hypothetical protein NP_470826.1 1491731 R 272626 CDS NP_470827.1 16800559 1130099 complement(1492503..1493627) 1 NC_003212.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 1493627 rpoD 1130099 rpoD Listeria innocua Clip11262 RNA polymerase sigma factor RpoD NP_470827.1 1492503 R 272626 CDS NP_470828.1 16800560 1130100 complement(1493722..1495602) 1 NC_003212.1 DNA primase 1495602 dnaG 1130100 dnaG Listeria innocua Clip11262 DNA primase NP_470828.1 1493722 R 272626 CDS NP_470829.1 16800561 1130101 complement(1495622..1496062) 1 NC_003212.1 hypothetical protein 1496062 1130101 lin1493 Listeria innocua Clip11262 hypothetical protein NP_470829.1 1495622 R 272626 CDS NP_470830.1 16800562 1130102 complement(1496250..1497074) 1 NC_003212.1 hypothetical protein 1497074 1130102 lin1494 Listeria innocua Clip11262 hypothetical protein NP_470830.1 1496250 R 272626 CDS NP_470831.1 16800563 1130103 complement(1497109..1499175) 1 NC_003212.1 similar to glycyl-tRNA synthetase beta chain; glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1499175 glyS 1130103 glyS Listeria innocua Clip11262 glycyl-tRNA synthetase subunit beta NP_470831.1 1497109 R 272626 CDS NP_470832.1 16800564 1130104 complement(1499168..1500058) 1 NC_003212.1 similar to glycyl-tRNA synthetase alpha chain; glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1500058 glyQ 1130104 glyQ Listeria innocua Clip11262 glycyl-tRNA synthetase subunit alpha NP_470832.1 1499168 R 272626 CDS NP_470833.1 16800565 1130105 complement(1500339..1501106) 1 NC_003212.1 similar to Bacillus subtilis RecO protein involved in DNA repair and homologous recombination; involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1501106 recO 1130105 recO Listeria innocua Clip11262 DNA repair protein RecO NP_470833.1 1500339 R 272626 CDS NP_470834.1 16800566 1130106 1501244..1501861 1 NC_003212.1 lin1498; hypothetical protein 1501861 1130106 lin1498 Listeria innocua Clip11262 hypothetical protein NP_470834.1 1501244 D 272626 CDS NP_470835.1 16800567 1130107 complement(1501908..1502813) 1 NC_003212.1 similar to GTP binding proteins; Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1502813 era 1130107 era Listeria innocua Clip11262 GTP-binding protein Era NP_470835.1 1501908 R 272626 CDS NP_470836.1 16800568 1130108 complement(1502810..1503205) 1 NC_003212.1 similar to cytidine deaminase; hypothetical protein 1503205 1130108 lin1500 Listeria innocua Clip11262 hypothetical protein NP_470836.1 1502810 R 272626 CDS NP_470837.1 16800569 1130110 complement(1503230..1503625) 1 NC_003212.1 similar to diacylglycerol kinase; hypothetical protein 1503625 1130110 lin1501 Listeria innocua Clip11262 hypothetical protein NP_470837.1 1503230 R 272626 CDS NP_470838.1 16800570 1130111 complement(1503603..1504088) 1 NC_003212.1 putative metalloprotease 1504088 1130111 lin1502 Listeria innocua Clip11262 putative metalloprotease NP_470838.1 1503603 R 272626 CDS NP_470839.1 16800571 1130113 complement(1504105..1506261) 1 NC_003212.1 hypothetical protein 1506261 1130113 lin1503 Listeria innocua Clip11262 hypothetical protein NP_470839.1 1504105 R 272626 CDS NP_470840.1 16800572 1130114 complement(1506277..1507236) 1 NC_003212.1 similar to phosphate starvation induced protein PhoH; hypothetical protein 1507236 1130114 lin1504 Listeria innocua Clip11262 hypothetical protein NP_470840.1 1506277 R 272626 CDS NP_470841.1 16800573 1130115 complement(1507426..1507872) 1 NC_003212.1 hypothetical protein 1507872 1130115 lin1505 Listeria innocua Clip11262 hypothetical protein NP_470841.1 1507426 R 272626 CDS NP_470842.1 16800574 1130116 complement(1507892..1508065) 1 NC_003212.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1508065 rpsU 1130116 rpsU Listeria innocua Clip11262 30S ribosomal protein S21 NP_470842.1 1507892 R 272626 CDS NP_470843.1 16800575 1130117 complement(1508263..1509030) 1 NC_003212.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1509030 1130117 lin1507 Listeria innocua Clip11262 16S ribosomal RNA methyltransferase RsmE NP_470843.1 1508263 R 272626 CDS NP_470844.1 16800576 1130118 complement(1509031..1509975) 1 NC_003212.1 similar to ribosomal protein L11 methyltransferase; methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 1509975 prmA 1130118 prmA Listeria innocua Clip11262 ribosomal protein L11 methyltransferase NP_470844.1 1509031 R 272626 CDS NP_470845.1 16800577 1130120 complement(1510048..1511178) 1 NC_003212.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1511178 dnaJ 1130120 dnaJ Listeria innocua Clip11262 chaperone protein DnaJ NP_470845.1 1510048 R 272626 CDS NP_470846.1 16800578 1130121 complement(1511321..1513162) 1 NC_003212.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1513162 dnaK 1130121 dnaK Listeria innocua Clip11262 molecular chaperone DnaK NP_470846.1 1511321 R 272626 CDS NP_470847.1 16800579 1130122 complement(1513196..1513771) 1 NC_003212.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1513771 grpE 1130122 grpE Listeria innocua Clip11262 heat shock protein GrpE NP_470847.1 1513196 R 272626 CDS NP_470848.1 16800580 1130123 complement(1513813..1514850) 1 NC_003212.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1514850 hrcA 1130123 hrcA Listeria innocua Clip11262 heat-inducible transcription repressor NP_470848.1 1513813 R 272626 CDS NP_470849.1 16800581 1130124 complement(1514997..1516154) 1 NC_003212.1 highly similar to coproporphyrinogen III oxidase; catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1516154 1130124 lin1513 Listeria innocua Clip11262 coproporphyrinogen III oxidase NP_470849.1 1514997 R 272626 CDS NP_470850.1 16800582 1130125 complement(1516298..1518124) 1 NC_003212.1 highly similar to GTP-binding protein LepA; binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1518124 1130125 lin1514 Listeria innocua Clip11262 GTP-binding protein LepA NP_470850.1 1516298 R 272626 CDS NP_470851.1 16800583 1130126 1518369..1518623 1 NC_003212.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1518623 rpsT 1130126 rpsT Listeria innocua Clip11262 30S ribosomal protein S20 NP_470851.1 1518369 D 272626 CDS NP_470852.1 16800584 1130127 complement(1518708..1519739) 1 NC_003212.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1519739 holA 1130127 holA Listeria innocua Clip11262 DNA polymerase III subunit delta NP_470852.1 1518708 R 272626 CDS NP_470853.1 16800585 1130128 complement(1519807..1522047) 1 NC_003212.1 similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding; hypothetical protein 1522047 1130128 lin1517 Listeria innocua Clip11262 hypothetical protein NP_470853.1 1519807 R 272626 CDS NP_470854.1 16800586 1130129 complement(1522064..1522624) 1 NC_003212.1 similar to Bacillus subtilis ComEB protein; hypothetical protein 1522624 1130129 lin1518 Listeria innocua Clip11262 hypothetical protein NP_470854.1 1522064 R 272626 CDS NP_470855.1 16800587 1130130 complement(1522696..1523298) 1 NC_003212.1 similar to integral membrane protein ComEA; hypothetical protein 1523298 1130130 lin1519 Listeria innocua Clip11262 hypothetical protein NP_470855.1 1522696 R 272626 CDS NP_470856.1 16800588 1130131 complement(1523401..1524132) 1 NC_003212.1 hypothetical protein 1524132 1130131 lin1520 Listeria innocua Clip11262 hypothetical protein NP_470856.1 1523401 R 272626 CDS NP_470857.1 16800589 1130132 complement(1524193..1524549) 1 NC_003212.1 lin1521; hypothetical protein 1524549 1130132 lin1521 Listeria innocua Clip11262 hypothetical protein NP_470857.1 1524193 R 272626 CDS NP_470858.1 16800590 1130133 complement(1524554..1525129) 1 NC_003212.1 hypothetical protein 1525129 1130133 lin1522 Listeria innocua Clip11262 hypothetical protein NP_470858.1 1524554 R 272626 CDS NP_470859.1 16800591 1130135 complement(1525116..1525682) 1 NC_003212.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 1525682 nadD 1130135 nadD Listeria innocua Clip11262 nicotinic acid mononucleotide adenylyltransferase NP_470859.1 1525116 R 272626 CDS NP_470860.1 16800592 1130137 complement(1525701..1525991) 1 NC_003212.1 hypothetical protein 1525991 1130137 lin1524 Listeria innocua Clip11262 hypothetical protein NP_470860.1 1525701 R 272626 CDS NP_470861.1 16800593 1130138 complement(1525991..1526812) 1 NC_003212.1 similar to shikimate 5-dehydrogenase (AroD); hypothetical protein 1526812 1130138 lin1525 Listeria innocua Clip11262 hypothetical protein NP_470861.1 1525991 R 272626 CDS NP_470862.1 16800594 1130139 complement(1526832..1527932) 1 NC_003212.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 1527932 1130139 lin1526 Listeria innocua Clip11262 GTP-binding protein YqeH NP_470862.1 1526832 R 272626 CDS NP_470863.1 16800595 1130140 complement(1527929..1528450) 1 NC_003212.1 hypothetical protein 1528450 1130140 lin1527 Listeria innocua Clip11262 hypothetical protein NP_470863.1 1527929 R 272626 CDS NP_470864.1 16800596 1130142 1528614..1530422 1 NC_003212.1 similar to oligopeptidase; hypothetical protein 1530422 1130142 lin1528 Listeria innocua Clip11262 hypothetical protein NP_470864.1 1528614 D 272626 CDS NP_470865.1 16800597 1130143 complement(1530455..1531156) 1 NC_003212.1 similar to 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; hypothetical protein 1531156 1130143 lin1529 Listeria innocua Clip11262 hypothetical protein NP_470865.1 1530455 R 272626 CDS NP_470866.1 16800598 1130144 complement(1531207..1531839) 1 NC_003212.1 hypothetical protein 1531839 1130144 lin1530 Listeria innocua Clip11262 hypothetical protein NP_470866.1 1531207 R 272626 CDS NP_470867.1 16800599 1130145 complement(1531887..1532369) 1 NC_003212.1 similar to transcription elongation factor GreA; necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1532369 greA 1130145 greA Listeria innocua Clip11262 transcription elongation factor GreA NP_470867.1 1531887 R 272626 CDS NP_470868.1 16800600 1130146 complement(1532563..1533192) 1 NC_003212.1 similar to Uridine kinase; functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1533192 1130146 lin1532 Listeria innocua Clip11262 uridine kinase NP_470868.1 1532563 R 272626 CDS NP_470869.1 16800601 1130147 complement(1533189..1533842) 1 NC_003212.1 similar to O-methyltransferase; hypothetical protein 1533842 1130147 lin1533 Listeria innocua Clip11262 hypothetical protein NP_470869.1 1533189 R 272626 CDS NP_470870.1 16800602 1130149 complement(1533919..1534989) 1 NC_003212.1 hypothetical protein 1534989 1130149 lin1534 Listeria innocua Clip11262 hypothetical protein NP_470870.1 1533919 R 272626 CDS NP_470871.1 16800603 1130150 1535192..1535818 1 NC_003212.1 hypothetical protein 1535818 1130150 lin1535 Listeria innocua Clip11262 hypothetical protein NP_470871.1 1535192 D 272626 CDS NP_470872.1 16800604 1130151 complement(1535863..1536165) 1 NC_003212.1 hypothetical protein 1536165 1130151 lin1536 Listeria innocua Clip11262 hypothetical protein NP_470872.1 1535863 R 272626 CDS NP_470873.1 16800605 1130152 complement(1536181..1536597) 1 NC_003212.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1536597 1130152 lin1537 Listeria innocua Clip11262 Holliday junction resolvase-like protein NP_470873.1 1536181 R 272626 CDS NP_470874.1 16800606 1130153 complement(1536594..1536866) 1 NC_003212.1 lin1538; hypothetical protein 1536866 1130153 lin1538 Listeria innocua Clip11262 hypothetical protein NP_470874.1 1536594 R 272626 CDS NP_470875.1 16800607 1130154 complement(1536959..1539598) 1 NC_003212.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1539598 alaS 1130154 alaS Listeria innocua Clip11262 alanyl-tRNA synthetase NP_470875.1 1536959 R 272626 CDS NP_470876.1 16800608 1130155 complement(1539906..1540601) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 1540601 1130155 lin1540 Listeria innocua Clip11262 hypothetical protein NP_470876.1 1539906 R 272626 CDS NP_470877.1 16800609 1130156 complement(1540610..1542112) 1 NC_003212.1 similar to transporter; hypothetical protein 1542112 1130156 lin1541 Listeria innocua Clip11262 hypothetical protein NP_470877.1 1540610 R 272626 CDS NP_470878.1 16800610 1130157 1542280..1542966 1 NC_003212.1 similar to two-component response regulators; hypothetical protein 1542966 1130157 lin1542 Listeria innocua Clip11262 hypothetical protein NP_470878.1 1542280 D 272626 CDS NP_470879.1 16800611 1130158 1542963..1544402 1 NC_003212.1 similar to two-component sensor histidine kinase; hypothetical protein 1544402 1130158 lin1543 Listeria innocua Clip11262 hypothetical protein NP_470879.1 1542963 D 272626 CDS NP_470880.1 16800612 1130159 complement(1544432..1546828) 1 NC_003212.1 similar to exodeoxyribonuclease V; hypothetical protein 1546828 1130159 lin1544 Listeria innocua Clip11262 hypothetical protein NP_470880.1 1544432 R 272626 CDS NP_470881.1 16800613 1130160 complement(1546854..1547492) 1 NC_003212.1 hypothetical protein 1547492 1130160 lin1545 Listeria innocua Clip11262 hypothetical protein NP_470881.1 1546854 R 272626 CDS NP_470882.1 16800614 1130161 complement(1547536..1548276) 1 NC_003212.1 hypothetical protein 1548276 1130161 lin1546 Listeria innocua Clip11262 hypothetical protein NP_470882.1 1547536 R 272626 CDS NP_470883.1 16800615 1130162 complement(1548394..1549509) 1 NC_003212.1 similar to putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1549509 mnmA 1130162 mnmA Listeria innocua Clip11262 tRNA-specific 2-thiouridylase MnmA NP_470883.1 1548394 R 272626 CDS NP_470884.1 16800616 1130163 complement(1549528..1550676) 1 NC_003212.1 similar to iron-sulfur cofactor synthesis protein; hypothetical protein 1550676 1130163 lin1548 Listeria innocua Clip11262 hypothetical protein NP_470884.1 1549528 R 272626 CDS NP_470885.1 16800617 1130164 complement(1551057..1552340) 1 NC_003212.1 recombination factor protein RarA 1552340 1130164 lin1549 Listeria innocua Clip11262 recombination factor protein RarA NP_470885.1 1551057 R 272626 CDS NP_470886.1 16800618 1130165 1552490..1552912 1 NC_003212.1 hypothetical protein 1552912 1130165 lin1550 Listeria innocua Clip11262 hypothetical protein NP_470886.1 1552490 D 272626 CDS NP_470887.1 16800619 1130166 1553157..1554362 1 NC_003212.1 similar to ammonium transporter NrgA; hypothetical protein 1554362 1130166 lin1551 Listeria innocua Clip11262 hypothetical protein NP_470887.1 1553157 D 272626 CDS NP_470888.1 16800620 1130167 1554376..1554741 1 NC_003212.1 similar to nitrogen regulatory PII protein; hypothetical protein 1554741 1130167 lin1552 Listeria innocua Clip11262 hypothetical protein NP_470888.1 1554376 D 272626 CDS NP_470889.1 16800621 1130168 1554891..1555271 1 NC_003212.1 lin1553; hypothetical protein 1555271 1130168 lin1553 Listeria innocua Clip11262 hypothetical protein NP_470889.1 1554891 D 272626 CDS NP_470890.1 16800622 1130169 complement(1555307..1557082) 1 NC_003212.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1557082 aspS 1130169 aspS Listeria innocua Clip11262 aspartyl-tRNA synthetase NP_470890.1 1555307 R 272626 CDS NP_470891.1 16800623 1130170 complement(1557084..1558361) 1 NC_003212.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1558361 hisS 1130170 hisS Listeria innocua Clip11262 histidyl-tRNA synthetase NP_470891.1 1557084 R 272626 CDS NP_470892.1 16800624 1130171 1558803..1560086 1 NC_003212.1 similar to N-acetylmuramoyl-L-alanine amidase; hypothetical protein 1560086 1130171 lin1556 Listeria innocua Clip11262 hypothetical protein NP_470892.1 1558803 D 272626 CDS NP_470893.1 16800625 1130172 complement(1560135..1560587) 1 NC_003212.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1560587 1130172 lin1557 Listeria innocua Clip11262 D-tyrosyl-tRNA(Tyr) deacylase NP_470893.1 1560135 R 272626 CDS NP_470894.1 16800626 1130173 complement(1560603..1562819) 1 NC_003212.1 similar to (p)ppGpp synthetase; hypothetical protein 1562819 1130173 lin1558 Listeria innocua Clip11262 hypothetical protein NP_470894.1 1560603 R 272626 CDS NP_470895.1 16800627 1130174 complement(1563025..1563546) 1 NC_003212.1 similar to adenine phosphoribosyltransferase; catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1563546 1130174 lin1559 Listeria innocua Clip11262 adenine phosphoribosyltransferase NP_470895.1 1563025 R 272626 CDS NP_470896.1 16800628 1130175 complement(1563536..1565887) 1 NC_003212.1 similar to single-stranded-DNA-specific exonuclease (RecJ); hypothetical protein 1565887 1130175 lin1560 Listeria innocua Clip11262 hypothetical protein NP_470896.1 1563536 R 272626 CDS NP_470897.1 16800629 1130177 complement(1565992..1566336) 1 NC_003212.1 hypothetical protein 1566336 1130177 lin1561 Listeria innocua Clip11262 hypothetical protein NP_470897.1 1565992 R 272626 CDS NP_470898.1 16800630 1130178 complement(1566433..1568697) 1 NC_003212.1 similar to protein-export membrane protein SecDF; part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 1568697 1130178 lin1562 Listeria innocua Clip11262 bifunctional preprotein translocase subunit SecD/SecF NP_470898.1 1566433 R 272626 CDS NP_470899.1 16800631 1130179 complement(1568807..1569100) 1 NC_003212.1 hypothetical protein 1569100 1130179 lin1563 Listeria innocua Clip11262 hypothetical protein NP_470899.1 1568807 R 272626 CDS NP_470900.1 16800632 1130180 complement(1569241..1569573) 1 NC_003212.1 hypothetical protein 1569573 1130180 lin1564 Listeria innocua Clip11262 hypothetical protein NP_470900.1 1569241 R 272626 CDS NP_470901.1 16800633 1130181 complement(1569607..1570746) 1 NC_003212.1 similar to tRNA-guanine transglycosylase Tgt; Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1570746 tgt 1130181 tgt Listeria innocua Clip11262 queuine tRNA-ribosyltransferase NP_470901.1 1569607 R 272626 CDS NP_470902.1 16800634 1130182 complement(1570833..1571861) 1 NC_003212.1 similar to S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1571861 queA 1130182 queA Listeria innocua Clip11262 S-adenosylmethionine:tRNA ribosyltransferase-isomerase NP_470902.1 1570833 R 272626 CDS NP_470903.1 16800635 1130183 complement(1571865..1572872) 1 NC_003212.1 highly similar to Holliday junction DNA helicase RuvB; promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1572872 ruvB 1130183 ruvB Listeria innocua Clip11262 Holliday junction DNA helicase RuvB NP_470903.1 1571865 R 272626 CDS NP_470904.1 16800636 1130185 complement(1572888..1573493) 1 NC_003212.1 highly similar to Holliday junction DNA helicase (ruvA); plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1573493 ruvA 1130185 ruvA Listeria innocua Clip11262 Holliday junction DNA helicase RuvA NP_470904.1 1572888 R 272626 CDS NP_470905.1 16800637 1130186 complement(1573618..1574553) 1 NC_003212.1 similar to L-lactate dehydrogenase; hypothetical protein 1574553 1130186 lin1569 Listeria innocua Clip11262 hypothetical protein NP_470905.1 1573618 R 272626 CDS NP_470906.1 16800638 1130187 complement(1574620..1575345) 1 NC_003212.1 hypothetical protein 1575345 1130187 lin1570 Listeria innocua Clip11262 hypothetical protein NP_470906.1 1574620 R 272626 CDS NP_470907.1 16800639 1130188 complement(1575458..1576306) 1 NC_003212.1 similar to prephenate dehydratase PheA; catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 1576306 1130188 lin1571 Listeria innocua Clip11262 prephenate dehydratase NP_470907.1 1575458 R 272626 CDS NP_470908.1 16800640 1130189 complement(1576374..1577663) 1 NC_003212.1 conserved GTP binding protein; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1577663 obgE 1130189 obgE Listeria innocua Clip11262 GTPase ObgE NP_470908.1 1576374 R 272626 CDS NP_470909.1 16800641 1130190 complement(1577823..1579316) 1 NC_003212.1 similar to glycerol kinase; Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1579316 glpK 1130190 glpK Listeria innocua Clip11262 glycerol kinase NP_470909.1 1577823 R 272626 CDS NP_470910.1 16800642 1130191 complement(1579391..1580209) 1 NC_003212.1 similar to glycerol uptake facilitator; hypothetical protein 1580209 1130191 lin1574 Listeria innocua Clip11262 hypothetical protein NP_470910.1 1579391 R 272626 CDS NP_470911.1 16800643 1130192 complement(1580576..1580866) 1 NC_003212.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1580866 rpmA 1130192 rpmA Listeria innocua Clip11262 50S ribosomal protein L27 NP_470911.1 1580576 R 272626 CDS NP_470912.1 16800644 1130193 complement(1580880..1581197) 1 NC_003212.1 hypothetical protein 1581197 1130193 lin1576 Listeria innocua Clip11262 hypothetical protein NP_470912.1 1580880 R 272626 CDS NP_470913.1 16800645 1130194 complement(1581216..1581524) 1 NC_003212.1 50S ribosomal protein L21 1581524 rplU 1130194 rplU Listeria innocua Clip11262 50S ribosomal protein L21 NP_470913.1 1581216 R 272626 CDS NP_470914.1 16800646 1130195 complement(1581681..1583042) 1 NC_003212.1 similar to ribonuclease G; hypothetical protein 1583042 1130195 lin1578 Listeria innocua Clip11262 hypothetical protein NP_470914.1 1581681 R 272626 CDS NP_470915.1 16800647 1130196 complement(1583095..1583895) 1 NC_003212.1 highly similar to cell division inhibitor (septum placement) protein MinD; hypothetical protein 1583895 1130196 lin1579 Listeria innocua Clip11262 hypothetical protein NP_470915.1 1583095 R 272626 CDS NP_470916.1 16800648 1130197 complement(1583898..1584575) 1 NC_003212.1 similar to cell-division inhibition (septum placement) protein MinC; blocks the formation of polar Z-ring septums; septum formation inhibitor 1584575 minC 1130197 minC Listeria innocua Clip11262 septum formation inhibitor NP_470916.1 1583898 R 272626 CDS NP_470917.1 16800649 1130199 complement(1584754..1585272) 1 NC_003212.1 similar to cell-shape determining protein MreD; hypothetical protein 1585272 1130199 lin1581 Listeria innocua Clip11262 hypothetical protein NP_470917.1 1584754 R 272626 CDS NP_470918.1 16800650 1130200 complement(1585275..1586162) 1 NC_003212.1 similar to cell-shape determining protein MreC; in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1586162 1130200 lin1582 Listeria innocua Clip11262 rod shape-determining protein MreC NP_470918.1 1585275 R 272626 CDS NP_470919.1 16800651 1130201 complement(1586248..1587261) 1 NC_003212.1 similar to cell-shape determining protein MreB; functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1587261 1130201 lin1583 Listeria innocua Clip11262 rod shape-determining protein MreB NP_470919.1 1586248 R 272626 CDS NP_470920.1 16800652 1130202 complement(1587714..1588388) 1 NC_003212.1 similar to DNA repair protein RadC; Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 1588388 radC 1130202 radC Listeria innocua Clip11262 DNA repair protein RadC NP_470920.1 1587714 R 272626 CDS NP_470921.1 16800653 1130203 complement(1588401..1589111) 1 NC_003212.1 similar to Bacillus subtilis late competence protein ComC (type IV prepilin peptidase); hypothetical protein 1589111 1130203 lin1585 Listeria innocua Clip11262 hypothetical protein NP_470921.1 1588401 R 272626 CDS NP_470922.1 16800654 1130204 complement(1589325..1590614) 1 NC_003212.1 similar to Folyl-polyglutamate synthetase; hypothetical protein 1590614 1130204 lin1586 Listeria innocua Clip11262 hypothetical protein NP_470922.1 1589325 R 272626 CDS NP_470923.1 16800655 1130205 complement(1590678..1593326) 1 NC_003212.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1593326 valS 1130205 valS Listeria innocua Clip11262 valyl-tRNA synthetase NP_470923.1 1590678 R 272626 CDS NP_470924.1 16800656 1130206 complement(1593648..1594937) 1 NC_003212.1 highly similar to glutamate-1-semialdehyde 2,1-aminotransferases; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1594937 1130206 lin1588 Listeria innocua Clip11262 glutamate-1-semialdehyde aminotransferase NP_470924.1 1593648 R 272626 CDS NP_470925.1 16800657 1130207 complement(1594950..1595924) 1 NC_003212.1 highly similar to delta-aminolevulinic acid dehydratases (porphobilinogen synthase); catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1595924 1130207 lin1589 Listeria innocua Clip11262 delta-aminolevulinic acid dehydratase NP_470925.1 1594950 R 272626 CDS NP_470926.1 16800658 1130208 complement(1595921..1596643) 1 NC_003212.1 similar to uroporphyrinogen III cosynthase (HemD); catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1596643 hemD 1130208 hemD Listeria innocua Clip11262 uroporphyrinogen-III synthase NP_470926.1 1595921 R 272626 CDS NP_470927.1 16800659 1130210 complement(1596640..1597569) 1 NC_003212.1 highly similar to porphobilinogen deaminases (hydroxymethylbilane synthase); transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1597569 hemC 1130210 hemC Listeria innocua Clip11262 porphobilinogen deaminase NP_470927.1 1596640 R 272626 CDS NP_470928.1 16800660 1130212 complement(1597573..1598880) 1 NC_003212.1 highly similar to glutamyl-tRNA reductase; catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1598880 hemA 1130212 hemA Listeria innocua Clip11262 glutamyl-tRNA reductase NP_470928.1 1597573 R 272626 CDS NP_470929.1 16800661 1130214 complement(1599008..1599592) 1 NC_003212.1 Probable GTP-binding protein engB; binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1599592 engB 1130214 engB Listeria innocua Clip11262 ribosome biogenesis GTP-binding protein YsxC NP_470929.1 1599008 R 272626 CDS NP_470930.1 16800662 1130215 complement(1599698..1601620) 1 NC_003212.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1601620 thrS 1130215 thrS Listeria innocua Clip11262 threonyl-tRNA synthetase NP_470930.1 1599698 R 272626 CDS NP_470931.1 16800663 1130216 complement(1601971..1602894) 1 NC_003212.1 Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 1602894 dnaI 1130216 dnaI Listeria innocua Clip11262 primosomal protein DnaI NP_470931.1 1601971 R 272626 CDS NP_470932.1 16800664 1130217 complement(1602904..1604280) 1 NC_003212.1 chromosome replication initiation / membrane attachment protein DnaB 1604280 dnaB 1130217 dnaB Listeria innocua Clip11262 chromosome replication initiation / membrane attachment protein DnaB NP_470932.1 1602904 R 272626 CDS NP_470933.1 16800665 1130218 complement(1604286..1604750) 1 NC_003212.1 transcriptional regulator NrdR 1604750 nrdR 1130218 nrdR Listeria innocua Clip11262 transcriptional regulator NrdR NP_470933.1 1604286 R 272626 CDS NP_470934.1 16800666 1130219 complement(1604828..1605430) 1 NC_003212.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1605430 coaE 1130219 coaE Listeria innocua Clip11262 dephospho-CoA kinase NP_470934.1 1604828 R 272626 CDS NP_470935.1 16800667 1130220 complement(1605447..1606268) 1 NC_003212.1 highly similar to formamidopyrimidine-DNA glycosylases; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1606268 1130220 lin1599 Listeria innocua Clip11262 formamidopyrimidine-DNA glycosylase NP_470935.1 1605447 R 272626 CDS NP_470936.1 16800668 1130221 complement(1606292..1608919) 1 NC_003212.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1608919 polA 1130221 polA Listeria innocua Clip11262 DNA polymerase I NP_470936.1 1606292 R 272626 CDS NP_470937.1 16800669 1130222 complement(1609085..1610347) 1 NC_003212.1 highly similar to isocitrate dehyrogenases; Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1610347 1130222 lin1601 Listeria innocua Clip11262 isocitrate dehydrogenase NP_470937.1 1609085 R 272626 CDS NP_470938.1 16800670 1130223 complement(1610367..1611488) 1 NC_003212.1 highly similar to citrate synthase subunit II; catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 1611488 1130223 lin1602 Listeria innocua Clip11262 citrate synthase NP_470938.1 1610367 R 272626 CDS NP_470939.1 16800671 1130224 complement(1611525..1611986) 1 NC_003212.1 hypothetical protein 1611986 1130224 lin1603 Listeria innocua Clip11262 hypothetical protein NP_470939.1 1611525 R 272626 CDS NP_470940.1 16800672 1130225 complement(1612144..1612521) 1 NC_003212.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA 1612521 fxsA 1130225 fxsA Listeria innocua Clip11262 FxsA NP_470940.1 1612144 R 272626 CDS NP_470941.1 16800673 1130226 complement(1612641..1614398) 1 NC_003212.1 highly similar to pyruvate kinases; catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1614398 1130226 lin1605 Listeria innocua Clip11262 pyruvate kinase NP_470941.1 1612641 R 272626 CDS NP_470942.1 16800674 1130227 complement(1614680..1615639) 1 NC_003212.1 lin1606; catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1615639 pfkA 1130227 pfkA Listeria innocua Clip11262 6-phosphofructokinase NP_470942.1 1614680 R 272626 CDS NP_470943.1 16800675 1130228 complement(1615924..1616880) 1 NC_003212.1 highly similar to acetyl CoA carboxylase (alpha subunit); catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1616880 1130228 lin1607 Listeria innocua Clip11262 acetyl-CoA carboxylase carboxyltransferase subunit alpha NP_470943.1 1615924 R 272626 CDS NP_470944.1 16800676 1130229 complement(1616870..1617754) 1 NC_003212.1 highly similar to acetyl-CoA carboxylase beta subunit; catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1617754 1130229 lin1608 Listeria innocua Clip11262 acetyl-CoA carboxylase subunit beta NP_470944.1 1616870 R 272626 CDS NP_470945.1 16800677 1130230 complement(1617970..1621296) 1 NC_003212.1 highly similar to DNA polymerase III (alpha subunit) DnaE; hypothetical protein 1621296 1130230 lin1609 Listeria innocua Clip11262 hypothetical protein NP_470945.1 1617970 R 272626 CDS NP_470946.1 16800678 1130231 complement(1621419..1622354) 1 NC_003212.1 hypothetical protein 1622354 1130231 lin1610 Listeria innocua Clip11262 hypothetical protein NP_470946.1 1621419 R 272626 CDS NP_470947.1 16800679 1130232 complement(1622375..1623688) 1 NC_003212.1 hypothetical protein 1623688 1130232 lin1611 Listeria innocua Clip11262 hypothetical protein NP_470947.1 1622375 R 272626 CDS NP_470948.1 16800680 1130233 complement(1623714..1624400) 1 NC_003212.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase 1624400 1130233 lin1612 Listeria innocua Clip11262 metal-dependent hydrolase NP_470948.1 1623714 R 272626 CDS NP_470949.1 16800681 1130234 1624564..1625661 1 NC_003212.1 similar to X-Pro dipeptidase; hypothetical protein 1625661 1130234 lin1613 Listeria innocua Clip11262 hypothetical protein NP_470949.1 1624564 D 272626 CDS NP_470950.1 16800682 1130235 complement(1625701..1626813) 1 NC_003212.1 similar to alanine dehydrogenase; hypothetical protein 1626813 1130235 lin1614 Listeria innocua Clip11262 hypothetical protein NP_470950.1 1625701 R 272626 CDS NP_470951.1 16800683 1130236 1627052..1627510 1 NC_003212.1 hypothetical protein 1627510 1130236 lin1615 Listeria innocua Clip11262 hypothetical protein NP_470951.1 1627052 D 272626 CDS NP_470952.1 16800684 1130237 complement(1627562..1628755) 1 NC_003212.1 highly similar to acetate kinase; AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1628755 1130237 lin1616 Listeria innocua Clip11262 acetate kinase NP_470952.1 1627562 R 272626 CDS NP_470953.1 16800685 1130238 complement(1628779..1629777) 1 NC_003212.1 weakly similar to site specific DNA-methyltransferase; hypothetical protein 1629777 1130238 lin1617 Listeria innocua Clip11262 hypothetical protein NP_470953.1 1628779 R 272626 CDS NP_470954.1 16800686 1130239 complement(1630221..1630448) 1 NC_003212.1 similar to a protein encoded by Th916; hypothetical protein 1630448 1130239 lin1618 Listeria innocua Clip11262 hypothetical protein NP_470954.1 1630221 R 272626 CDS NP_470955.1 16800687 1130240 complement(1630441..1630869) 1 NC_003212.1 lin1619; hypothetical protein 1630869 1130240 lin1619 Listeria innocua Clip11262 hypothetical protein NP_470955.1 1630441 R 272626 CDS NP_470956.1 16800688 1130242 complement(1630989..1631675) 1 NC_003212.1 similar to putative iron-sulfur flavoprotein; hypothetical protein 1631675 1130242 lin1620 Listeria innocua Clip11262 hypothetical protein NP_470956.1 1630989 R 272626 CDS NP_470957.1 16800689 1130243 complement(1631693..1632454) 1 NC_003212.1 similar to ketoacyl reductases; hypothetical protein 1632454 1130243 lin1621 Listeria innocua Clip11262 hypothetical protein NP_470957.1 1631693 R 272626 CDS NP_470958.1 16800690 1130244 complement(1632451..1632888) 1 NC_003212.1 similar to transcriptional regulator (MerR family); hypothetical protein 1632888 1130244 lin1622 Listeria innocua Clip11262 hypothetical protein NP_470958.1 1632451 R 272626 CDS NP_470959.1 16800691 1130246 1633423..1634328 1 NC_003212.1 similar to site-specific recombinase tnpX - Clostridium perfringens transposon Tn4451 (N terminal part); hypothetical protein 1634328 1130246 lin1623 Listeria innocua Clip11262 hypothetical protein NP_470959.1 1633423 D 272626 CDS NP_470960.1 16800692 1130247 1634365..1635084 1 NC_003212.1 similar to site-specific recombinase tnpX - Clostridium perfringens transposon Tn4451; hypothetical protein 1635084 1130247 lin1624 Listeria innocua Clip11262 hypothetical protein NP_470960.1 1634365 D 272626 CDS NP_470961.1 16800693 1130248 complement(1635160..1635657) 1 NC_003212.1 similar to thiol peroxidases; antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1635657 tpx 1130248 tpx Listeria innocua Clip11262 thiol peroxidase NP_470961.1 1635160 R 272626 CDS NP_470962.1 16800694 1130249 complement(1635718..1636254) 1 NC_003212.1 hypothetical protein 1636254 1130249 lin1626 Listeria innocua Clip11262 hypothetical protein NP_470962.1 1635718 R 272626 CDS NP_470963.1 16800695 1130250 complement(1636274..1637287) 1 NC_003212.1 similar to proteases; hypothetical protein 1637287 1130250 lin1627 Listeria innocua Clip11262 hypothetical protein NP_470963.1 1636274 R 272626 CDS NP_470964.1 16800696 1130251 1637466..1638269 1 NC_003212.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1638269 ppnK 1130251 ppnK Listeria innocua Clip11262 inorganic polyphosphate/ATP-NAD kinase NP_470964.1 1637466 D 272626 CDS NP_470965.1 16800697 1130252 complement(1638302..1639252) 1 NC_003212.1 highly similar to ornithine carbamoyltransferase; catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1639252 1130252 lin1629 Listeria innocua Clip11262 ornithine carbamoyltransferase NP_470965.1 1638302 R 272626 CDS NP_470966.1 16800698 1130253 complement(1639254..1640408) 1 NC_003212.1 highly similar to N-acetylornithine aminotransferase; acetylornithine aminotransferase 1640408 argD 1130253 argD Listeria innocua Clip11262 acetylornithine aminotransferase NP_470966.1 1639254 R 272626 CDS NP_470967.1 16800699 1130255 complement(1640405..1641157) 1 NC_003212.1 highly similar to N-acetylglutamate 5-phosphotransferase; catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1641157 1130255 lin1631 Listeria innocua Clip11262 acetylglutamate kinase NP_470967.1 1640405 R 272626 CDS NP_470968.1 16800700 1130257 complement(1641170..1642366) 1 NC_003212.1 highly similar to ornithine acetyltransferase and amino-acid acetyltransferases; bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 1642366 argJ 1130257 argJ Listeria innocua Clip11262 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein NP_470968.1 1641170 R 272626 CDS NP_470969.1 16800701 1130258 complement(1642382..1643413) 1 NC_003212.1 similar to N-acetylglutamate gamma-semialdehyde dehydrogenases; catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1643413 argC 1130258 argC Listeria innocua Clip11262 N-acetyl-gamma-glutamyl-phosphate reductase NP_470969.1 1642382 R 272626 CDS NP_470970.1 16800702 1130259 complement(1643585..1644796) 1 NC_003212.1 similar to thiamin biosynthesis protein ThiI; Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1644796 1130259 lin1634 Listeria innocua Clip11262 thiamine biosynthesis protein ThiI NP_470970.1 1643585 R 272626 CDS NP_470971.1 16800703 1130260 complement(1644798..1645937) 1 NC_003212.1 similar to iron-sulfur cofactor synthesis protein nifS; hypothetical protein 1645937 1130260 lin1635 Listeria innocua Clip11262 hypothetical protein NP_470971.1 1644798 R 272626 CDS NP_470972.1 16800704 1130261 complement(1646065..1647780) 1 NC_003212.1 similar to Bacillus subtilis negative regulator of FtsZ ring formation (EzrA); acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 1647780 1130261 lin1636 Listeria innocua Clip11262 septation ring formation regulator EzrA NP_470972.1 1646065 R 272626 CDS NP_470973.1 16800705 1130262 1648060..1648548 1 NC_003212.1 hypothetical protein 1648548 1130262 lin1637 Listeria innocua Clip11262 hypothetical protein NP_470973.1 1648060 D 272626 CDS NP_470974.1 16800706 1130263 1648760..1649362 1 NC_003212.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1649362 rpsD 1130263 rpsD Listeria innocua Clip11262 30S ribosomal protein S4 NP_470974.1 1648760 D 272626 CDS NP_470975.1 16800707 1130264 complement(1649462..1650721) 1 NC_003212.1 tyrosyl-tRNA synthetase 1650721 tyrS 1130264 tyrS Listeria innocua Clip11262 tyrosyl-tRNA synthetase NP_470975.1 1649462 R 272626 CDS NP_470976.1 16800708 1130265 complement(1651043..1652050) 1 NC_003212.1 catabolite control protein A 1652050 ccpA 1130265 ccpA Listeria innocua Clip11262 catabolite control protein A NP_470976.1 1651043 R 272626 CDS NP_470977.1 16800709 1130266 complement(1652285..1653370) 1 NC_003212.1 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase 1653370 aroA 1130266 aroA Listeria innocua Clip11262 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase NP_470977.1 1652285 R 272626 CDS NP_470978.1 16800710 1130267 complement(1653589..1654113) 1 NC_003212.1 similar to general stress protein; hypothetical protein 1654113 1130267 lin1642 Listeria innocua Clip11262 hypothetical protein NP_470978.1 1653589 R 272626 CDS NP_470979.1 16800711 1130268 complement(1654135..1654590) 1 NC_003212.1 hypothetical protein 1654590 1130268 lin1643 Listeria innocua Clip11262 hypothetical protein NP_470979.1 1654135 R 272626 CDS NP_470980.1 16800712 1130269 1654848..1655960 1 NC_003212.1 similar to aminopeptidase; hypothetical protein 1655960 1130269 lin1644 Listeria innocua Clip11262 hypothetical protein NP_470980.1 1654848 D 272626 CDS NP_470981.1 16800713 1130270 complement(1656000..1656545) 1 NC_003212.1 similar to 2-cys peroxiredoxin; hypothetical protein 1656545 1130270 lin1645 Listeria innocua Clip11262 hypothetical protein NP_470981.1 1656000 R 272626 CDS NP_470982.1 16800714 1130271 complement(1656690..1658033) 1 NC_003212.1 similar to UDP-N-acetyl muramate-alanine ligases; Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1658033 murC 1130271 murC Listeria innocua Clip11262 UDP-N-acetylmuramate--L-alanine ligase NP_470982.1 1656690 R 272626 CDS NP_470983.1 16800715 1130272 complement(1658329..1660683) 1 NC_003212.1 similar to DNA translocase; hypothetical protein 1660683 1130272 lin1647 Listeria innocua Clip11262 hypothetical protein NP_470983.1 1658329 R 272626 CDS NP_470984.1 16800716 1130273 complement(1660992..1661609) 1 NC_003212.1 similar phenylalanyl-tRNA synthetase (beta subunit); hypothetical protein 1661609 1130273 lin1648 Listeria innocua Clip11262 hypothetical protein NP_470984.1 1660992 R 272626 CDS NP_470985.1 16800717 1130274 complement(1661615..1662415) 1 NC_003212.1 hypothetical protein 1662415 1130274 lin1649 Listeria innocua Clip11262 hypothetical protein NP_470985.1 1661615 R 272626 CDS NP_470986.1 16800718 1130276 complement(1662450..1662761) 1 NC_003212.1 similar to thioredoxin; hypothetical protein 1662761 1130276 lin1650 Listeria innocua Clip11262 hypothetical protein NP_470986.1 1662450 R 272626 CDS NP_470987.1 16800719 1130277 complement(1662875..1663093) 1 NC_003212.1 hypothetical protein 1663093 1130277 lin1651 Listeria innocua Clip11262 hypothetical protein NP_470987.1 1662875 R 272626 CDS NP_470988.1 16800720 1130278 complement(1663086..1664159) 1 NC_003212.1 similar to aminopeptidase; hypothetical protein 1664159 1130278 lin1652 Listeria innocua Clip11262 hypothetical protein NP_470988.1 1663086 R 272626 CDS NP_470989.1 16800721 1130279 1664356..1664667 1 NC_003212.1 hypothetical protein 1664667 1130279 lin1653 Listeria innocua Clip11262 hypothetical protein NP_470989.1 1664356 D 272626 CDS NP_470990.1 16800722 1130280 complement(1664704..1664952) 1 NC_003212.1 hypothetical protein 1664952 1130280 lin1654 Listeria innocua Clip11262 hypothetical protein NP_470990.1 1664704 R 272626 CDS NP_470991.1 16800723 1130281 complement(1665086..1665934) 1 NC_003212.1 hypothetical protein 1665934 1130281 lin1655 Listeria innocua Clip11262 hypothetical protein NP_470991.1 1665086 R 272626 CDS NP_470992.1 16800724 1130282 complement(1665996..1666640) 1 NC_003212.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1666640 trmB 1130282 trmB Listeria innocua Clip11262 tRNA (guanine-N(7)-)-methyltransferase NP_470992.1 1665996 R 272626 CDS NP_470993.1 16800725 1130283 complement(1666647..1667429) 1 NC_003212.1 hypothetical protein 1667429 1130283 lin1657 Listeria innocua Clip11262 hypothetical protein NP_470993.1 1666647 R 272626 CDS NP_470994.1 16800726 1130285 complement(1667633..1669102) 1 NC_003212.1 similar to multidrug-efflux transporter; hypothetical protein 1669102 1130285 lin1658 Listeria innocua Clip11262 hypothetical protein NP_470994.1 1667633 R 272626 CDS NP_470995.1 16800727 1130286 complement(1669105..1669545) 1 NC_003212.1 similar to transcription regulator MarR family; hypothetical protein 1669545 1130286 lin1659 Listeria innocua Clip11262 hypothetical protein NP_470995.1 1669105 R 272626 CDS NP_470996.1 16800728 1130288 complement(1669769..1670638) 1 NC_003212.1 D-amino acid aminotransferase 1670638 daaA 1130288 daaA Listeria innocua Clip11262 D-amino acid aminotransferase NP_470996.1 1669769 R 272626 CDS NP_470997.1 16800729 1130289 complement(1670751..1672163) 1 NC_003212.1 similar to Xaa-His dipeptidase; divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 1672163 1130289 lin1661 Listeria innocua Clip11262 dipeptidase PepV NP_470997.1 1670751 R 272626 CDS NP_470998.1 16800730 1130290 complement(1672237..1672650) 1 NC_003212.1 weakly similar to Escherichia coli MutT protein (dGTP pyrophosphohydrolase; hypothetical protein 1672650 1130290 lin1662 Listeria innocua Clip11262 hypothetical protein NP_470998.1 1672237 R 272626 CDS NP_470999.1 16800731 1130291 1672755..1673585 1 NC_003212.1 hypothetical protein 1673585 1130291 lin1663 Listeria innocua Clip11262 hypothetical protein NP_470999.1 1672755 D 272626 CDS NP_471000.1 16800732 1130292 complement(1673622..1674275) 1 NC_003212.1 hypothetical protein 1674275 1130292 lin1664 Listeria innocua Clip11262 hypothetical protein NP_471000.1 1673622 R 272626 CDS NP_471001.1 16800733 1130293 complement(1674285..1675898) 1 NC_003212.1 similar to putative transporters; hypothetical protein 1675898 1130293 lin1665 Listeria innocua Clip11262 hypothetical protein NP_471001.1 1674285 R 272626 CDS NP_471002.1 16800734 1130294 complement(1676009..1677622) 1 NC_003212.1 similar to putative transporters; hypothetical protein 1677622 1130294 lin1666 Listeria innocua Clip11262 hypothetical protein NP_471002.1 1676009 R 272626 CDS NP_471003.1 16800735 1130295 complement(1677707..1678144) 1 NC_003212.1 lin1667; hypothetical protein 1678144 1130295 lin1667 Listeria innocua Clip11262 hypothetical protein NP_471003.1 1677707 R 272626 CDS NP_471004.1 16800736 1130296 complement(1678215..1678988) 1 NC_003212.1 highly similar to tryptophan synthase (alpha subunit); catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1678988 trpA 1130296 trpA Listeria innocua Clip11262 tryptophan synthase subunit alpha NP_471004.1 1678215 R 272626 CDS NP_471005.1 16800737 1130297 complement(1678981..1680183) 1 NC_003212.1 highly similar to tryptophan synthase (beta subunit); catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1680183 1130297 lin1669 Listeria innocua Clip11262 tryptophan synthase subunit beta NP_471005.1 1678981 R 272626 CDS NP_471006.1 16800738 1130299 complement(1680183..1680794) 1 NC_003212.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1680794 trpF 1130299 trpF Listeria innocua Clip11262 N-(5'-phosphoribosyl)anthranilate isomerase NP_471006.1 1680183 R 272626 CDS NP_471007.1 16800739 1130301 complement(1680791..1681549) 1 NC_003212.1 highly similar to indol-3-glycerol phosphate synthases; involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 1681549 trpC 1130301 trpC Listeria innocua Clip11262 indole-3-glycerol-phosphate synthase NP_471007.1 1680791 R 272626 CDS NP_471008.1 16800740 1130303 complement(1681546..1682565) 1 NC_003212.1 highly similar to anthranilate phosphoribosyltransferase; Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1682565 trpD 1130303 trpD Listeria innocua Clip11262 anthranilate phosphoribosyltransferase NP_471008.1 1681546 R 272626 CDS NP_471009.1 16800741 1130304 complement(1682537..1683142) 1 NC_003212.1 highly similar to anthranilate synthase beta subunit; TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1683142 1130304 lin1673 Listeria innocua Clip11262 anthranilate synthase component II NP_471009.1 1682537 R 272626 CDS NP_471010.1 16800742 1130305 complement(1683139..1684503) 1 NC_003212.1 highly similar to anthranilate synthase alpha subunit; with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1684503 1130305 lin1674 Listeria innocua Clip11262 anthranilate synthase component I NP_471010.1 1683139 R 272626 CDS NP_471011.1 16800743 1130306 1685574..1688174 1 NC_003212.1 similar to Alcohol-acetaldehyde dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1688174 1130306 lin1675 Listeria innocua Clip11262 bifunctional acetaldehyde-CoA/alcohol dehydrogenase NP_471011.1 1685574 D 272626 CDS NP_471012.1 16800744 1130307 1688298..1688726 1 NC_003212.1 hypothetical protein 1688726 1130307 lin1676 Listeria innocua Clip11262 hypothetical protein NP_471012.1 1688298 D 272626 CDS NP_471013.1 16800745 1130308 1688810..1689730 1 NC_003212.1 similar to similar to ABC transporter (ATP-binding protein); hypothetical protein 1689730 1130308 lin1677 Listeria innocua Clip11262 hypothetical protein NP_471013.1 1688810 D 272626 CDS NP_471014.1 16800746 1130310 1689727..1690794 1 NC_003212.1 similar to membrane proteins; hypothetical protein 1690794 1130310 lin1678 Listeria innocua Clip11262 hypothetical protein NP_471014.1 1689727 D 272626 CDS NP_471015.1 16800747 1130311 complement(1690834..1691808) 1 NC_003212.1 hypothetical protein 1691808 1130311 lin1679 Listeria innocua Clip11262 hypothetical protein NP_471015.1 1690834 R 272626 CDS NP_471016.1 16800748 1130312 complement(1691808..1692389) 1 NC_003212.1 similar to dna-3-methyladenine glycosidase; hypothetical protein 1692389 1130312 lin1680 Listeria innocua Clip11262 hypothetical protein NP_471016.1 1691808 R 272626 CDS NP_471017.1 16800749 1130314 complement(1692402..1692635) 1 NC_003212.1 lin1681; hypothetical protein 1692635 1130314 lin1681 Listeria innocua Clip11262 hypothetical protein NP_471017.1 1692402 R 272626 CDS NP_471018.1 16800750 1130315 complement(1692739..1695441) 1 NC_003212.1 highly similar to aconitate hydratases; Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1695441 1130315 lin1682 Listeria innocua Clip11262 aconitate hydratase NP_471018.1 1692739 R 272626 CDS NP_471019.1 16800751 1130316 complement(1695596..1696399) 1 NC_003212.1 similar to putative sigma factor regulator; hypothetical protein 1696399 1130316 lin1683 Listeria innocua Clip11262 hypothetical protein NP_471019.1 1695596 R 272626 CDS NP_471020.1 16800752 1130317 complement(1696423..1696845) 1 NC_003212.1 lin1684; hypothetical protein 1696845 1130317 lin1684 Listeria innocua Clip11262 hypothetical protein NP_471020.1 1696423 R 272626 CDS NP_471021.1 16800753 1130318 complement(1696845..1700063) 1 NC_003212.1 similar to SNF2-type helicase; hypothetical protein 1700063 1130318 lin1685 Listeria innocua Clip11262 hypothetical protein NP_471021.1 1696845 R 272626 CDS NP_471022.1 16800754 1130320 complement(1700147..1703218) 1 NC_003212.1 similar to ATP-dependent dsDNA exonuclease SbcC; hypothetical protein 1703218 1130320 lin1686 Listeria innocua Clip11262 hypothetical protein NP_471022.1 1700147 R 272626 CDS NP_471023.1 16800755 1130321 complement(1703215..1704339) 1 NC_003212.1 similar to putative exonucleases SbcD; hypothetical protein 1704339 1130321 lin1687 Listeria innocua Clip11262 hypothetical protein NP_471023.1 1703215 R 272626 CDS NP_471024.1 16800756 1130323 1704455..1705063 1 NC_003212.1 similar to 1-acylglycerol-3-phosphate O-acyltransferases; hypothetical protein 1705063 1130323 lin1688 Listeria innocua Clip11262 hypothetical protein NP_471024.1 1704455 D 272626 CDS NP_471025.1 16800757 1130324 complement(1705105..1705620) 1 NC_003212.1 lin1689; hypothetical protein 1705620 1130324 lin1689 Listeria innocua Clip11262 hypothetical protein NP_471025.1 1705105 R 272626 CDS NP_471026.1 16800758 1130325 complement(1705794..1706282) 1 NC_003212.1 hypothetical protein 1706282 1130325 lin1690 Listeria innocua Clip11262 hypothetical protein NP_471026.1 1705794 R 272626 CDS NP_471027.1 16800759 1130326 complement(1706363..1708168) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 1708168 1130326 lin1691 Listeria innocua Clip11262 hypothetical protein NP_471027.1 1706363 R 272626 CDS NP_471028.1 16800760 1130327 complement(1708152..1709921) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 1709921 1130327 lin1692 Listeria innocua Clip11262 hypothetical protein NP_471028.1 1708152 R 272626 CDS NP_471029.1 16800761 1130329 complement(1710335..1710955) 1 NC_003212.1 putative cellsurface protein 1710955 1130329 lin1693 Listeria innocua Clip11262 putative cellsurface protein NP_471029.1 1710335 R 272626 CDS NP_471030.1 16800762 1130330 complement(1710971..1711465) 1 NC_003212.1 putative cellsurface protein 1711465 1130330 lin1694 Listeria innocua Clip11262 putative cellsurface protein NP_471030.1 1710971 R 272626 CDS NP_471031.1 16800763 1130331 complement(1711643..1712281) 1 NC_003212.1 hypothetical protein 1712281 1130331 lin1695 Listeria innocua Clip11262 hypothetical protein NP_471031.1 1711643 R 272626 CDS NP_471032.1 16800764 1130332 complement(1712668..1712907) 1 NC_003212.1 lin1696; hypothetical protein 1712907 1130332 lin1696 Listeria innocua Clip11262 hypothetical protein NP_471032.1 1712668 R 272626 CDS NP_471033.1 16800765 1130333 1713958..1714335 1 NC_003212.1 protein gp30 [Bacteriophage A118]; protein gp30 1714335 1130333 lin1697 Listeria innocua Clip11262 protein gp30 NP_471033.1 1713958 D 272626 CDS NP_471034.1 16800766 1130334 1714369..1714719 1 NC_003212.1 protein gp29 [Bacteriophage A118]; protein gp29 1714719 1130334 lin1698 Listeria innocua Clip11262 protein gp29 NP_471034.1 1714369 D 272626 CDS NP_471035.1 16800767 1130335 1714724..1715173 1 NC_003212.1 Portein gp28 [Bacteriophage A118]; protein gp28 1715173 1130335 lin1699 Listeria innocua Clip11262 protein gp28 NP_471035.1 1714724 D 272626 CDS NP_471036.1 16800768 1130336 complement(1715216..1716142) 1 NC_003212.1 similar to N-acetylmuramoyl-L-alanine amidase (N-terminal part) and to L-alanoyl-D-glutamate peptidase (C-terminal part); hypothetical protein 1716142 1130336 lin1700 Listeria innocua Clip11262 hypothetical protein NP_471036.1 1715216 R 272626 CDS NP_471037.1 16800769 1130337 complement(1716145..1716378) 1 NC_003212.1 lin1701; hypothetical protein 1716378 1130337 lin1701 Listeria innocua Clip11262 hypothetical protein NP_471037.1 1716145 R 272626 CDS NP_471038.1 16800770 1130340 complement(1716378..1716638) 1 NC_003212.1 similar to holin from bacteriophage; hypothetical protein 1716638 1130340 lin1702 Listeria innocua Clip11262 hypothetical protein NP_471038.1 1716378 R 272626 CDS NP_471039.1 16800771 1130342 complement(1716649..1716864) 1 NC_003212.1 lin1703; hypothetical protein 1716864 1130342 lin1703 Listeria innocua Clip11262 hypothetical protein NP_471039.1 1716649 R 272626 CDS NP_471040.1 16800772 1130343 complement(1716883..1717329) 1 NC_003212.1 lin1704; hypothetical protein 1717329 1130343 lin1704 Listeria innocua Clip11262 hypothetical protein NP_471040.1 1716883 R 272626 CDS NP_471041.1 16800773 1130344 complement(1717305..1717751) 1 NC_003212.1 lin1705; hypothetical protein 1717751 1130344 lin1705 Listeria innocua Clip11262 hypothetical protein NP_471041.1 1717305 R 272626 CDS NP_471042.1 16800774 1130346 complement(1717783..1717908) 1 NC_003212.1 similar to protein gp22 [Bacteriophage A118]; hypothetical protein 1717908 1130346 lin1706 Listeria innocua Clip11262 hypothetical protein NP_471042.1 1717783 R 272626 CDS NP_471043.1 16800775 1130347 complement(1717938..1718279) 1 NC_003212.1 lin1707; hypothetical protein 1718279 1130347 lin1707 Listeria innocua Clip11262 hypothetical protein NP_471043.1 1717938 R 272626 CDS NP_471044.1 16800776 1130348 complement(1718285..1719013) 1 NC_003212.1 lin1708; hypothetical protein 1719013 1130348 lin1708 Listeria innocua Clip11262 hypothetical protein NP_471044.1 1718285 R 272626 CDS NP_471045.1 16800777 1130350 complement(1719034..1719675) 1 NC_003212.1 lin1709; hypothetical protein 1719675 1130350 lin1709 Listeria innocua Clip11262 hypothetical protein NP_471045.1 1719034 R 272626 CDS NP_471046.1 16800778 1130351 complement(1719665..1720816) 1 NC_003212.1 hypothetical protein 1720816 1130351 lin1710 Listeria innocua Clip11262 hypothetical protein NP_471046.1 1719665 R 272626 CDS NP_471047.1 16800779 1130353 complement(1720809..1721171) 1 NC_003212.1 lin1711; hypothetical protein 1721171 1130353 lin1711 Listeria innocua Clip11262 hypothetical protein NP_471047.1 1720809 R 272626 CDS NP_471048.1 16800780 1130355 complement(1721168..1721506) 1 NC_003212.1 lin1712; hypothetical protein 1721506 1130355 lin1712 Listeria innocua Clip11262 hypothetical protein NP_471048.1 1721168 R 272626 CDS NP_471049.1 16800781 1130357 complement(1721507..1722313) 1 NC_003212.1 lin1713; hypothetical protein 1722313 1130357 lin1713 Listeria innocua Clip11262 hypothetical protein NP_471049.1 1721507 R 272626 CDS NP_471050.1 16800782 1130359 complement(1722313..1722678) 1 NC_003212.1 lin1714; hypothetical protein 1722678 1130359 lin1714 Listeria innocua Clip11262 hypothetical protein NP_471050.1 1722313 R 272626 CDS NP_471051.1 16800783 1130361 complement(1722678..1723241) 1 NC_003212.1 lin1715; hypothetical protein 1723241 1130361 lin1715 Listeria innocua Clip11262 hypothetical protein NP_471051.1 1722678 R 272626 CDS NP_471052.1 16800784 1130363 complement(1723247..1727962) 1 NC_003212.1 similar to minor capsid protein 1608 - Lactobacillus phage phi-gle; hypothetical protein 1727962 1130363 lin1716 Listeria innocua Clip11262 hypothetical protein NP_471052.1 1723247 R 272626 CDS NP_471053.1 16800785 1130365 complement(1727964..1728176) 1 NC_003212.1 lin1717; hypothetical protein 1728176 1130365 lin1717 Listeria innocua Clip11262 hypothetical protein NP_471053.1 1727964 R 272626 CDS NP_471054.1 16800786 1130367 complement(1728139..1728495) 1 NC_003212.1 lin1718; hypothetical protein 1728495 1130367 lin1718 Listeria innocua Clip11262 hypothetical protein NP_471054.1 1728139 R 272626 CDS NP_471055.1 16800787 1130369 complement(1728548..1728946) 1 NC_003212.1 lin1719; hypothetical protein 1728946 1130369 lin1719 Listeria innocua Clip11262 hypothetical protein NP_471055.1 1728548 R 272626 CDS NP_471056.1 16800788 1130370 complement(1728963..1729958) 1 NC_003212.1 weakly similar to hypothetical protein of bacteriophage Felix 01; hypothetical protein 1729958 1130370 lin1720 Listeria innocua Clip11262 hypothetical protein NP_471056.1 1728963 R 272626 CDS NP_471057.1 16800789 1130371 complement(1729963..1730451) 1 NC_003212.1 lin1721; hypothetical protein 1730451 1130371 lin1721 Listeria innocua Clip11262 hypothetical protein NP_471057.1 1729963 R 272626 CDS NP_471058.1 16800790 1130373 complement(1730441..1730815) 1 NC_003212.1 lin1722; hypothetical protein 1730815 1130373 lin1722 Listeria innocua Clip11262 hypothetical protein NP_471058.1 1730441 R 272626 CDS NP_471059.1 16800791 1130375 complement(1730815..1731414) 1 NC_003212.1 lin1723; hypothetical protein 1731414 1130375 lin1723 Listeria innocua Clip11262 hypothetical protein NP_471059.1 1730815 R 272626 CDS NP_471060.1 16800792 1130377 complement(1731414..1731749) 1 NC_003212.1 lin1724; hypothetical protein 1731749 1130377 lin1724 Listeria innocua Clip11262 hypothetical protein NP_471060.1 1731414 R 272626 CDS NP_471061.1 16800793 1130378 complement(1731761..1732147) 1 NC_003212.1 lin1725; hypothetical protein 1732147 1130378 lin1725 Listeria innocua Clip11262 hypothetical protein NP_471061.1 1731761 R 272626 CDS NP_471062.1 16800794 1130379 complement(1732170..1733075) 1 NC_003212.1 hypothetical protein 1733075 1130379 lin1726 Listeria innocua Clip11262 hypothetical protein NP_471062.1 1732170 R 272626 CDS NP_471063.1 16800795 1130380 complement(1733096..1733545) 1 NC_003212.1 lin1727; hypothetical protein 1733545 1130380 lin1727 Listeria innocua Clip11262 hypothetical protein NP_471063.1 1733096 R 272626 CDS NP_471064.1 16800796 1130381 complement(1733545..1734654) 1 NC_003212.1 hypothetical protein 1734654 1130381 lin1728 Listeria innocua Clip11262 hypothetical protein NP_471064.1 1733545 R 272626 CDS NP_471065.1 16800797 1130383 complement(1734703..1734873) 1 NC_003212.1 lin1729; hypothetical protein 1734873 1130383 lin1729 Listeria innocua Clip11262 hypothetical protein NP_471065.1 1734703 R 272626 CDS NP_471066.1 16800798 1130385 complement(1734870..1736279) 1 NC_003212.1 some similarities to plasmid-related proteins; hypothetical protein 1736279 1130385 lin1730 Listeria innocua Clip11262 hypothetical protein NP_471066.1 1734870 R 272626 CDS NP_471067.1 16800799 1130387 complement(1736272..1737657) 1 NC_003212.1 some similarities to conserved hypothetical proteins; hypothetical protein 1737657 1130387 lin1731 Listeria innocua Clip11262 hypothetical protein NP_471067.1 1736272 R 272626 CDS NP_471068.1 16800800 1130389 complement(1737671..1739131) 1 NC_003212.1 some similarities to phage related proteins; hypothetical protein 1739131 1130389 lin1732 Listeria innocua Clip11262 hypothetical protein NP_471068.1 1737671 R 272626 CDS NP_471069.1 16800801 1130390 complement(1739109..1739993) 1 NC_003212.1 weakly similar to phage related proteins; hypothetical protein 1739993 1130390 lin1733 Listeria innocua Clip11262 hypothetical protein NP_471069.1 1739109 R 272626 CDS NP_471070.1 16800802 1130392 complement(1740039..1740263) 1 NC_003212.1 lin1734; hypothetical protein 1740263 1130392 lin1734 Listeria innocua Clip11262 hypothetical protein NP_471070.1 1740039 R 272626 CDS NP_471071.1 16800803 1130393 complement(1740291..1740521) 1 NC_003212.1 lin1735; hypothetical protein 1740521 1130393 lin1735 Listeria innocua Clip11262 hypothetical protein NP_471071.1 1740291 R 272626 CDS NP_471072.1 16800804 1130394 complement(1740652..1740849) 1 NC_003212.1 lin1736; hypothetical protein 1740849 1130394 lin1736 Listeria innocua Clip11262 hypothetical protein NP_471072.1 1740652 R 272626 CDS NP_471073.1 16800805 1130395 complement(1740897..1742234) 1 NC_003212.1 weakly similar to methyltransferases; hypothetical protein 1742234 1130395 lin1737 Listeria innocua Clip11262 hypothetical protein NP_471073.1 1740897 R 272626 CDS NP_471074.1 16800806 1130396 complement(1743052..1743819) 1 NC_003212.1 similar to a putative antirepressor [Bacteriophage SPBc2]; hypothetical protein 1743819 1130396 lin1738 Listeria innocua Clip11262 hypothetical protein NP_471074.1 1743052 R 272626 CDS NP_471075.1 16800807 1130398 complement(1743832..1744257) 1 NC_003212.1 similar to protein gp66 of Bacteriophage A118; hypothetical protein 1744257 1130398 lin1739 Listeria innocua Clip11262 hypothetical protein NP_471075.1 1743832 R 272626 CDS NP_471076.1 16800808 1130399 complement(1744335..1744895) 1 NC_003212.1 similar to hypothetical protein of Lactobacillus phage phi-gle; hypothetical protein 1744895 1130399 lin1740 Listeria innocua Clip11262 hypothetical protein NP_471076.1 1744335 R 272626 CDS NP_471077.1 16800809 1130400 complement(1744907..1745158) 1 NC_003212.1 similar to hypothetical protein from phage P2; hypothetical protein 1745158 1130400 lin1741 Listeria innocua Clip11262 hypothetical protein NP_471077.1 1744907 R 272626 CDS NP_471078.1 16800810 1130401 complement(1745742..1746422) 1 NC_003212.1 lin1742; hypothetical protein 1746422 1130401 lin1742 Listeria innocua Clip11262 hypothetical protein NP_471078.1 1745742 R 272626 CDS NP_471079.1 16800811 1130402 complement(1746435..1747379) 1 NC_003212.1 similar to phage intagrase proteins; hypothetical protein 1747379 1130402 lin1743 Listeria innocua Clip11262 hypothetical protein NP_471079.1 1746435 R 272626 CDS NP_471080.1 16800812 1130403 complement(1747616..1748977) 1 NC_003212.1 lin1744; hypothetical protein 1748977 1130403 lin1744 Listeria innocua Clip11262 hypothetical protein NP_471080.1 1747616 R 272626 CDS NP_471081.1 16800813 1130404 complement(1748974..1749396) 1 NC_003212.1 lin1745; hypothetical protein 1749396 1130404 lin1745 Listeria innocua Clip11262 hypothetical protein NP_471081.1 1748974 R 272626 CDS NP_471082.1 16800814 1130405 complement(1749408..1749584) 1 NC_003212.1 lin1746; hypothetical protein 1749584 1130405 lin1746 Listeria innocua Clip11262 hypothetical protein NP_471082.1 1749408 R 272626 CDS NP_471083.1 16800815 1130406 complement(1749544..1749921) 1 NC_003212.1 lin1747; hypothetical protein 1749921 1130406 lin1747 Listeria innocua Clip11262 hypothetical protein NP_471083.1 1749544 R 272626 CDS NP_471084.1 16800816 1130408 complement(1749962..1750582) 1 NC_003212.1 lin1748; hypothetical protein 1750582 1130408 lin1748 Listeria innocua Clip11262 hypothetical protein NP_471084.1 1749962 R 272626 CDS NP_471085.1 16800817 1130409 complement(1750604..1751041) 1 NC_003212.1 similar to hypothetical protein, Staphylococcus aureus phage phi PVL; hypothetical protein 1751041 1130409 lin1749 Listeria innocua Clip11262 hypothetical protein NP_471085.1 1750604 R 272626 CDS NP_471086.1 16800818 1130410 complement(1751022..1751261) 1 NC_003212.1 lin1750; hypothetical protein 1751261 1130410 lin1750 Listeria innocua Clip11262 hypothetical protein NP_471086.1 1751022 R 272626 CDS NP_471087.1 16800819 1130412 complement(1751218..1751445) 1 NC_003212.1 lin1751; hypothetical protein 1751445 1130412 lin1751 Listeria innocua Clip11262 hypothetical protein NP_471087.1 1751218 R 272626 CDS NP_471088.1 16800820 1130414 complement(1751623..1752486) 1 NC_003212.1 similarities Staphylococcus aureus prophage phiPV83; hypothetical protein 1752486 1130414 lin1752 Listeria innocua Clip11262 hypothetical protein NP_471088.1 1751623 R 272626 CDS NP_471089.1 16800821 1130415 complement(1752362..1753279) 1 NC_003212.1 lin1753; hypothetical protein 1753279 1130415 lin1753 Listeria innocua Clip11262 hypothetical protein NP_471089.1 1752362 R 272626 CDS NP_471090.1 16800822 1130417 complement(1753291..1754049) 1 NC_003212.1 similar to hypothetical protein 44 - Staphylococcus aureus phage phi PVL; hypothetical protein 1754049 1130417 lin1754 Listeria innocua Clip11262 hypothetical protein NP_471090.1 1753291 R 272626 CDS NP_471091.1 16800823 1130418 complement(1753988..1754770) 1 NC_003212.1 some similarities to phage related proteins; hypothetical protein 1754770 1130418 lin1755 Listeria innocua Clip11262 hypothetical protein NP_471091.1 1753988 R 272626 CDS NP_471092.1 16800824 1130419 complement(1754774..1756756) 1 NC_003212.1 similar to hypothetical protein of Staphylococcus aureus phage phi PVL; hypothetical protein 1756756 1130419 lin1756 Listeria innocua Clip11262 hypothetical protein NP_471092.1 1754774 R 272626 CDS NP_471093.1 16800825 1130421 complement(1756701..1757042) 1 NC_003212.1 lin1757; hypothetical protein 1757042 1130421 lin1757 Listeria innocua Clip11262 hypothetical protein NP_471093.1 1756701 R 272626 CDS NP_471094.1 16800826 1130423 complement(1757060..1757287) 1 NC_003212.1 lin1758; hypothetical protein 1757287 1130423 lin1758 Listeria innocua Clip11262 hypothetical protein NP_471094.1 1757060 R 272626 CDS NP_471095.1 16800827 1130424 complement(1757465..1757755) 1 NC_003212.1 lin1759; hypothetical protein 1757755 1130424 lin1759 Listeria innocua Clip11262 hypothetical protein NP_471095.1 1757465 R 272626 CDS NP_471096.1 16800828 1130425 complement(1758382..1758906) 1 NC_003212.1 similar to protein gp43 [Bacteriophage A118]; hypothetical protein 1758906 1130425 lin1760 Listeria innocua Clip11262 hypothetical protein NP_471096.1 1758382 R 272626 CDS NP_471097.1 16800829 1130426 complement(1758978..1759202) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 1759202 1130426 lin1761 Listeria innocua Clip11262 hypothetical protein NP_471097.1 1758978 R 272626 CDS NP_471098.1 16800830 1130427 1759363..1759803 1 NC_003212.1 similar to immunity repressor protein - Bacillus phage phi-105; hypothetical protein 1759803 1130427 lin1762 Listeria innocua Clip11262 hypothetical protein NP_471098.1 1759363 D 272626 CDS NP_471099.1 16800831 1130428 1759826..1760248 1 NC_003212.1 similar to ORF2 [bacteriophage phi-105]; hypothetical protein 1760248 1130428 lin1763 Listeria innocua Clip11262 hypothetical protein NP_471099.1 1759826 D 272626 CDS NP_471100.1 16800832 1130429 1760284..1760832 1 NC_003212.1 hypothetical protein 1760832 1130429 lin1764 Listeria innocua Clip11262 hypothetical protein NP_471100.1 1760284 D 272626 CDS NP_471101.1 16800833 1130430 1760914..1762089 1 NC_003212.1 similar to integrase; hypothetical protein 1762089 1130430 lin1765 Listeria innocua Clip11262 hypothetical protein NP_471101.1 1760914 D 272626 CDS NP_471102.1 16800834 1130431 complement(1762250..1763134) 1 NC_003212.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1763134 tsf 1130431 tsf Listeria innocua Clip11262 elongation factor Ts NP_471102.1 1762250 R 272626 CDS NP_471103.1 16800835 1130432 complement(1763214..1763963) 1 NC_003212.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1763963 rpsB 1130432 rpsB Listeria innocua Clip11262 30S ribosomal protein S2 NP_471103.1 1763214 R 272626 CDS NP_471104.1 16800836 1130433 complement(1764158..1764535) 1 NC_003212.1 similar to Antigen C; hypothetical protein 1764535 1130433 lin1768 Listeria innocua Clip11262 hypothetical protein NP_471104.1 1764158 R 272626 CDS NP_471105.1 16800837 1130434 complement(1764667..1767078) 1 NC_003212.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1767078 leuS 1130434 leuS Listeria innocua Clip11262 leucyl-tRNA synthetase NP_471105.1 1764667 R 272626 CDS NP_471106.1 16800838 1130435 1767482..1768447 1 NC_003212.1 hypothetical protein 1768447 1130435 lin1770 Listeria innocua Clip11262 hypothetical protein NP_471106.1 1767482 D 272626 CDS NP_471107.1 16800839 1130437 1768444..1769019 1 NC_003212.1 similar to conserved hypothetical protein; hypothetical protein 1769019 1130437 lin1771 Listeria innocua Clip11262 hypothetical protein NP_471107.1 1768444 D 272626 CDS NP_471108.1 16800840 1130438 complement(1769045..1770910) 1 NC_003212.1 similar to asparagine synthetase; hypothetical protein 1770910 1130438 lin1772 Listeria innocua Clip11262 hypothetical protein NP_471108.1 1769045 R 272626 CDS NP_471109.1 16800841 1130439 complement(1771047..1772246) 1 NC_003212.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1772246 1130439 lin1773 Listeria innocua Clip11262 S-adenosylmethionine synthetase NP_471109.1 1771047 R 272626 CDS NP_471110.1 16800842 1130440 1772657..1772959 1 NC_003212.1 lin1774; hypothetical protein 1772959 1130440 lin1774 Listeria innocua Clip11262 hypothetical protein NP_471110.1 1772657 D 272626 CDS NP_471111.1 16800843 1130441 complement(1773026..1773934) 1 NC_003212.1 similar to L-lactate dehydrogenases; hypothetical protein 1773934 1130441 lin1775 Listeria innocua Clip11262 hypothetical protein NP_471111.1 1773026 R 272626 CDS NP_471112.1 16800844 1130442 complement(1773951..1774193) 1 NC_003212.1 some similarity to hypothetical proteins; hypothetical protein 1774193 1130442 lin1776 Listeria innocua Clip11262 hypothetical protein NP_471112.1 1773951 R 272626 CDS NP_471113.1 16800845 1130443 complement(1774244..1774717) 1 NC_003212.1 some similarity to hypothetical proteins; hypothetical protein 1774717 1130443 lin1777 Listeria innocua Clip11262 hypothetical protein NP_471113.1 1774244 R 272626 CDS NP_471114.1 16800846 1130444 1774791..1775057 1 NC_003212.1 hypothetical protein 1775057 1130444 lin1778 Listeria innocua Clip11262 hypothetical protein NP_471114.1 1774791 D 272626 CDS NP_471115.1 16800847 1130445 1775206..1776159 1 NC_003212.1 similar to ABC transporter and adhesion proteins; hypothetical protein 1776159 1130445 lin1779 Listeria innocua Clip11262 hypothetical protein NP_471115.1 1775206 D 272626 CDS NP_471116.1 16800848 1130446 complement(1776179..1777588) 1 NC_003212.1 similar to O-succinylbenzoic acid-CoA ligase; converts O-succinylbenzoate to O-succinylbenzoyl-CoA; O-succinylbenzoic acid--CoA ligase 1777588 1130446 lin1780 Listeria innocua Clip11262 O-succinylbenzoic acid--CoA ligase NP_471116.1 1776179 R 272626 CDS NP_471117.1 16800849 1130447 complement(1777604..1778422) 1 NC_003212.1 similar to dihydroxynapthoic acid synthetase; catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1778422 1130447 lin1781 Listeria innocua Clip11262 naphthoate synthase NP_471117.1 1777604 R 272626 CDS NP_471118.1 16800850 1130448 complement(1778419..1779246) 1 NC_003212.1 similar to prolyl aminopetidases; hypothetical protein 1779246 1130448 lin1782 Listeria innocua Clip11262 hypothetical protein NP_471118.1 1778419 R 272626 CDS NP_471119.1 16800851 1130450 complement(1779248..1780990) 1 NC_003212.1 similar to 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / 2-oxoglutarate decarboxylase; SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1780990 1130450 lin1783 Listeria innocua Clip11262 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase NP_471119.1 1779248 R 272626 CDS NP_471120.1 16800852 1130451 complement(1780987..1782375) 1 NC_003212.1 similar to menaquinone-specific isochorismate synthase; synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase 1782375 1130451 lin1784 Listeria innocua Clip11262 menaquinone-specific isochorismate synthase NP_471120.1 1780987 R 272626 CDS NP_471121.1 16800853 1130452 1782550..1783488 1 NC_003212.1 similar to menaquinone biosynthesis proteins; catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1783488 1130452 lin1785 Listeria innocua Clip11262 1,4-dihydroxy-2-naphthoate octaprenyltransferase NP_471121.1 1782550 D 272626 CDS NP_471122.1 16800854 1130453 complement(1783521..1785374) 1 NC_003212.1 similar to 5-methyltetrahydrofolate-homocysteine methyltransferase (metH); catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein 1785374 1130453 lin1786 Listeria innocua Clip11262 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein NP_471122.1 1783521 R 272626 CDS NP_471123.1 16800855 1130454 complement(1785371..1786543) 1 NC_003212.1 similar to cystathionine beta-lyase; catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 1786543 1130454 lin1787 Listeria innocua Clip11262 cystathionine beta-lyase NP_471123.1 1785371 R 272626 CDS NP_471124.1 16800856 1130456 complement(1786536..1787660) 1 NC_003212.1 similar to cystathionine gamma-synthase; hypothetical protein 1787660 1130456 lin1788 Listeria innocua Clip11262 hypothetical protein NP_471124.1 1786536 R 272626 CDS NP_471125.1 16800857 1130458 complement(1787682..1789979) 1 NC_003212.1 similar to cobalamin-independent methionine synthase; catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1789979 1130458 lin1789 Listeria innocua Clip11262 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase NP_471125.1 1787682 R 272626 CDS NP_471126.1 16800858 1130459 complement(1790287..1791444) 1 NC_003212.1 similar to transmembrane transport proteins; hypothetical protein 1791444 1130459 lin1790 Listeria innocua Clip11262 hypothetical protein NP_471126.1 1790287 R 272626 CDS NP_471127.1 16800859 1130463 complement(1798876..1799322) 1 NC_003212.1 similar to transcription regulators (Fur family), PerR in Bacillus subtilis; hypothetical protein 1799322 1130463 lin1791 Listeria innocua Clip11262 hypothetical protein NP_471127.1 1798876 R 272626 CDS NP_471128.1 16800860 1130464 complement(1799405..1800346) 1 NC_003212.1 similar to glycerate dehydrogenases; hypothetical protein 1800346 1130464 lin1792 Listeria innocua Clip11262 hypothetical protein NP_471128.1 1799405 R 272626 CDS NP_471129.1 16800861 1130465 1800489..1801787 1 NC_003212.1 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 1801787 gsaB 1130465 gsaB Listeria innocua Clip11262 glutamate-1-semialdehyde aminotransferase NP_471129.1 1800489 D 272626 CDS NP_471130.1 16800862 1130466 1801893..1802981 1 NC_003212.1 hypothetical protein 1802981 1130466 lin1794 Listeria innocua Clip11262 hypothetical protein NP_471130.1 1801893 D 272626 CDS NP_471131.1 16800863 1130467 complement(1803022..1803549) 1 NC_003212.1 hypothetical protein 1803549 1130467 lin1795 Listeria innocua Clip11262 hypothetical protein NP_471131.1 1803022 R 272626 CDS NP_471132.1 16800864 1130468 complement(1803704..1804450) 1 NC_003212.1 similar to glucose 1-dehydrogenase; Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1804450 1130468 lin1796 Listeria innocua Clip11262 enoyl-(acyl carrier protein) reductase NP_471132.1 1803704 R 272626 CDS NP_471133.1 16800865 1130469 complement(1804454..1805551) 1 NC_003212.1 similar to A/G-specific adenine glycosylase; hypothetical protein 1805551 1130469 lin1797 Listeria innocua Clip11262 hypothetical protein NP_471133.1 1804454 R 272626 CDS NP_471134.1 16800866 1130471 1805751..1806731 1 NC_003212.1 hypothetical protein 1806731 1130471 lin1798 Listeria innocua Clip11262 hypothetical protein NP_471134.1 1805751 D 272626 CDS NP_471135.1 16800867 1130472 complement(1806763..1807224) 1 NC_003212.1 similar to deoxyuridine triphosphate nucleotidohydrolases; hypothetical protein 1807224 1130472 lin1799 Listeria innocua Clip11262 hypothetical protein NP_471135.1 1806763 R 272626 CDS NP_471136.1 16800868 1130473 complement(1807236..1807469) 1 NC_003212.1 lin1800; hypothetical protein 1807469 1130473 lin1800 Listeria innocua Clip11262 hypothetical protein NP_471136.1 1807236 R 272626 CDS NP_471137.1 16800869 1130474 complement(1807471..1808280) 1 NC_003212.1 Regulatory protein recX; binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1808280 recX 1130474 recX Listeria innocua Clip11262 recombination regulator RecX NP_471137.1 1807471 R 272626 CDS NP_471138.1 16800870 1130476 1808378..1809280 1 NC_003212.1 similar to CDP-abequose synthase; hypothetical protein 1809280 1130476 lin1802 Listeria innocua Clip11262 hypothetical protein NP_471138.1 1808378 D 272626 CDS NP_471139.1 16800871 1130477 complement(1809298..1811895) 1 NC_003212.1 similar to putative membrane proteins; hypothetical protein 1811895 1130477 lin1803 Listeria innocua Clip11262 hypothetical protein NP_471139.1 1809298 R 272626 CDS NP_471140.1 16800872 1130478 complement(1811921..1812595) 1 NC_003212.1 hypothetical protein 1812595 1130478 lin1804 Listeria innocua Clip11262 hypothetical protein NP_471140.1 1811921 R 272626 CDS NP_471141.1 16800873 1130479 1812803..1813768 1 NC_003212.1 similar to putative transmembrane proteins; hypothetical protein 1813768 1130479 lin1805 Listeria innocua Clip11262 hypothetical protein NP_471141.1 1812803 D 272626 CDS NP_471142.1 16800874 1130480 complement(1813813..1814355) 1 NC_003212.1 similar to ribosomal-protein-alanine N-acetyltransferase; hypothetical protein 1814355 1130480 lin1806 Listeria innocua Clip11262 hypothetical protein NP_471142.1 1813813 R 272626 CDS NP_471143.1 16800875 1130481 1814546..1815448 1 NC_003212.1 some similarities to methyl-accepting chemotaxis proteins; hypothetical protein 1815448 1130481 lin1807 Listeria innocua Clip11262 hypothetical protein NP_471143.1 1814546 D 272626 CDS NP_471144.1 16800876 1130482 1815476..1815682 1 NC_003212.1 lin1808; hypothetical protein 1815682 1130482 lin1808 Listeria innocua Clip11262 hypothetical protein NP_471144.1 1815476 D 272626 CDS NP_471145.1 16800877 1130483 complement(1815717..1816070) 1 NC_003212.1 lin1809; hypothetical protein 1816070 1130483 lin1809 Listeria innocua Clip11262 hypothetical protein NP_471145.1 1815717 R 272626 CDS NP_471146.1 16800878 1130484 complement(1816091..1816492) 1 NC_003212.1 similar to glutathione transferase - fosfomycin resistance protein; hypothetical protein 1816492 1130484 lin1810 Listeria innocua Clip11262 hypothetical protein NP_471146.1 1816091 R 272626 CDS NP_471147.1 16800879 1130485 complement(1816563..1817534) 1 NC_003212.1 hypothetical protein 1817534 1130485 lin1811 Listeria innocua Clip11262 hypothetical protein NP_471147.1 1816563 R 272626 CDS NP_471148.1 16800880 1130488 complement(1817978..1819840) 1 NC_003212.1 similar to excinuclease ABC subunit A; hypothetical protein 1819840 1130488 lin1813 Listeria innocua Clip11262 hypothetical protein NP_471148.1 1817978 R 272626 CDS NP_471149.1 16800881 1130489 complement(1819857..1820762) 1 NC_003212.1 similar to putative AraC-type regulators; hypothetical protein 1820762 1130489 lin1814 Listeria innocua Clip11262 hypothetical protein NP_471149.1 1819857 R 272626 CDS NP_471150.1 16800882 1130490 complement(1821029..1822402) 1 NC_003212.1 similar to similar to RNA methyltransferases; hypothetical protein 1822402 1130490 lin1815 Listeria innocua Clip11262 hypothetical protein NP_471150.1 1821029 R 272626 CDS NP_471151.1 16800883 1130491 complement(1822467..1822847) 1 NC_003212.1 hypothetical protein 1822847 1130491 lin1816 Listeria innocua Clip11262 hypothetical protein NP_471151.1 1822467 R 272626 CDS NP_471152.1 16800884 1130492 1822953..1823597 1 NC_003212.1 similar to deoxyguanosine kinase/deoxyadenosine kinase(I) subunit; hypothetical protein 1823597 1130492 lin1817 Listeria innocua Clip11262 hypothetical protein NP_471152.1 1822953 D 272626 CDS NP_471153.1 16800885 1130493 complement(1823625..1824494) 1 NC_003212.1 similar to transport proteins; hypothetical protein 1824494 1130493 lin1818 Listeria innocua Clip11262 hypothetical protein NP_471153.1 1823625 R 272626 CDS NP_471154.1 16800886 1130494 1824585..1824806 1 NC_003212.1 lin1819; hypothetical protein 1824806 1130494 lin1819 Listeria innocua Clip11262 hypothetical protein NP_471154.1 1824585 D 272626 CDS NP_471155.1 16800887 1130495 complement(1824826..1825632) 1 NC_003212.1 similar to aminoglycoside N3'-acetyltransferases; hypothetical protein 1825632 1130495 lin1820 Listeria innocua Clip11262 hypothetical protein NP_471155.1 1824826 R 272626 CDS NP_471156.1 16800888 1130496 complement(1825761..1826519) 1 NC_003212.1 similar to methionine aminopeptidases; catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1826519 1130496 lin1821 Listeria innocua Clip11262 methionine aminopeptidase NP_471156.1 1825761 R 272626 CDS NP_471157.1 16800889 1130497 1826709..1827155 1 NC_003212.1 similar to putative flavodoxin; hypothetical protein 1827155 1130497 lin1822 Listeria innocua Clip11262 hypothetical protein NP_471157.1 1826709 D 272626 CDS NP_471158.1 16800890 1130498 1827293..1828525 1 NC_003212.1 highly similar to aminopeptidases; hypothetical protein 1828525 1130498 lin1823 Listeria innocua Clip11262 hypothetical protein NP_471158.1 1827293 D 272626 CDS NP_471159.1 16800891 1130499 1828628..1829887 1 NC_003212.1 similar to multidrug resistance protein, integral membrane protein; hypothetical protein 1829887 1130499 lin1824 Listeria innocua Clip11262 hypothetical protein NP_471159.1 1828628 D 272626 CDS NP_471160.1 16800892 1130500 1830107..1831099 1 NC_003212.1 similar to cell-shape determining proteins; rod shape-determining protein MreB 1831099 1130500 lin1825 Listeria innocua Clip11262 rod shape-determining protein MreB NP_471160.1 1830107 D 272626 CDS NP_471161.1 16800893 1130501 complement(1831362..1832027) 1 NC_003212.1 hypothetical protein 1832027 1130501 lin1826 Listeria innocua Clip11262 hypothetical protein NP_471161.1 1831362 R 272626 CDS NP_471162.1 16800894 1130502 1832228..1832803 1 NC_003212.1 similar to putative transcription regulators; hypothetical protein 1832803 1130502 lin1827 Listeria innocua Clip11262 hypothetical protein NP_471162.1 1832228 D 272626 CDS NP_471163.1 16800895 1130503 complement(1832886..1833953) 1 NC_003212.1 hypothetical protein 1833953 1130503 lin1828 Listeria innocua Clip11262 hypothetical protein NP_471163.1 1832886 R 272626 CDS NP_471164.1 16800896 1130504 complement(1834185..1835270) 1 NC_003212.1 similar to putative outer surface protein; hypothetical protein 1835270 1130504 lin1829 Listeria innocua Clip11262 hypothetical protein NP_471164.1 1834185 R 272626 CDS NP_471165.1 16800897 1130505 complement(1835292..1835594) 1 NC_003212.1 similar to phosphotransferase system (PTS) lichenan-specific enzyme IIA component; hypothetical protein 1835594 1130505 lin1830 Listeria innocua Clip11262 hypothetical protein NP_471165.1 1835292 R 272626 CDS NP_471166.1 16800898 1130506 complement(1835664..1835972) 1 NC_003212.1 similar to phosphotransferase system (PTS) lichenan-specific enzyme IIB component; hypothetical protein 1835972 1130506 lin1831 Listeria innocua Clip11262 hypothetical protein NP_471166.1 1835664 R 272626 CDS NP_471167.1 16800899 1130507 complement(1836130..1838808) 1 NC_003212.1 similar to transcriptional regulator (NifA/NtrC family); hypothetical protein 1838808 1130507 lin1832 Listeria innocua Clip11262 hypothetical protein NP_471167.1 1836130 R 272626 CDS NP_471168.1 16800900 1130508 complement(1838943..1840271) 1 NC_003212.1 similar to ATP-dependent RNA helicases; hypothetical protein 1840271 1130508 lin1833 Listeria innocua Clip11262 hypothetical protein NP_471168.1 1838943 R 272626 CDS NP_471169.1 16800901 1130509 complement(1840314..1841087) 1 NC_003212.1 lin1834; hypothetical protein 1841087 1130509 lin1834 Listeria innocua Clip11262 hypothetical protein NP_471169.1 1840314 R 272626 CDS NP_471170.1 16800902 1130510 complement(1841080..1841760) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 1841760 1130510 lin1835 Listeria innocua Clip11262 hypothetical protein NP_471170.1 1841080 R 272626 CDS NP_471171.1 16800903 1130512 complement(1841753..1842121) 1 NC_003212.1 similar to transcriptional regulator (GntR family); hypothetical protein 1842121 1130512 lin1836 Listeria innocua Clip11262 hypothetical protein NP_471171.1 1841753 R 272626 CDS NP_471172.1 16800904 1130514 complement(1842242..1843225) 1 NC_003212.1 hypothetical protein 1843225 1130514 lin1837 Listeria innocua Clip11262 hypothetical protein NP_471172.1 1842242 R 272626 CDS NP_471173.1 16800905 1130515 complement(1843285..1844250) 1 NC_003212.1 similar to transcription regulators (LacI family); hypothetical protein 1844250 1130515 lin1838 Listeria innocua Clip11262 hypothetical protein NP_471173.1 1843285 R 272626 CDS NP_471174.1 16800906 1130516 complement(1844298..1847558) 1 NC_003212.1 some similarities to cellobiose-phosphorylase; hypothetical protein 1847558 1130516 lin1839 Listeria innocua Clip11262 hypothetical protein NP_471174.1 1844298 R 272626 CDS NP_471175.1 16800907 1130517 complement(1847555..1849726) 1 NC_003212.1 similar to beta-glucosidases; hypothetical protein 1849726 1130517 lin1840 Listeria innocua Clip11262 hypothetical protein NP_471175.1 1847555 R 272626 CDS NP_471176.1 16800908 1130518 1850155..1851399 1 NC_003212.1 similar to sugar ABC transporter binding protein; hypothetical protein 1851399 1130518 lin1841 Listeria innocua Clip11262 hypothetical protein NP_471176.1 1850155 D 272626 CDS NP_471177.1 16800909 1130519 1851460..1852353 1 NC_003212.1 similar to sugar ABC transporter, permease protein; hypothetical protein 1852353 1130519 lin1842 Listeria innocua Clip11262 hypothetical protein NP_471177.1 1851460 D 272626 CDS NP_471178.1 16800910 1130520 1852371..1853201 1 NC_003212.1 similar to sugar ABC transporter, permease protein; hypothetical protein 1853201 1130520 lin1843 Listeria innocua Clip11262 hypothetical protein NP_471178.1 1852371 D 272626 CDS NP_471179.1 16800911 1130521 complement(1853247..1854716) 1 NC_003212.1 similar to glutamate synthase (small subunit); glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1854716 gltD 1130521 gltD Listeria innocua Clip11262 glutamate synthase subunit beta NP_471179.1 1853247 R 272626 CDS NP_471180.1 16800912 1130522 complement(1854731..1859323) 1 NC_003212.1 similar to glutamate synthase (large subunit); hypothetical protein 1859323 1130522 lin1845 Listeria innocua Clip11262 hypothetical protein NP_471180.1 1854731 R 272626 CDS NP_471181.1 16800913 1130523 1859518..1860405 1 NC_003212.1 transcription activator of glutamate synthase operon GltC 1860405 gltC 1130523 gltC Listeria innocua Clip11262 transcription activator of glutamate synthase operon GltC NP_471181.1 1859518 D 272626 CDS NP_471182.1 16800914 1130525 complement(1860402..1860920) 1 NC_003212.1 hypothetical protein 1860920 1130525 lin1847 Listeria innocua Clip11262 hypothetical protein NP_471182.1 1860402 R 272626 CDS NP_471183.1 16800915 1130526 complement(1860923..1862029) 1 NC_003212.1 similar to glycerol dehydrogenase; hypothetical protein 1862029 1130526 lin1848 Listeria innocua Clip11262 hypothetical protein NP_471183.1 1860923 R 272626 CDS NP_471184.1 16800916 1130527 complement(1862121..1862936) 1 NC_003212.1 similar to amino acid ABC transporter (binding protein); hypothetical protein 1862936 1130527 lin1849 Listeria innocua Clip11262 hypothetical protein NP_471184.1 1862121 R 272626 CDS NP_471185.1 16800917 1130528 complement(1862938..1863585) 1 NC_003212.1 similar to amino acid (glutamine) ABC transporter (ATP-binding protein); hypothetical protein 1863585 1130528 lin1850 Listeria innocua Clip11262 hypothetical protein NP_471185.1 1862938 R 272626 CDS NP_471186.1 16800918 1130530 complement(1863596..1864237) 1 NC_003212.1 similar to amino acid (glutamine) ABC transporter, permease protein; hypothetical protein 1864237 1130530 lin1851 Listeria innocua Clip11262 hypothetical protein NP_471186.1 1863596 R 272626 CDS NP_471187.1 16800919 1130531 complement(1864637..1865677) 1 NC_003212.1 similar to two-component sensor histidine kinase; hypothetical protein 1865677 1130531 lin1852 Listeria innocua Clip11262 hypothetical protein NP_471187.1 1864637 R 272626 CDS NP_471188.1 16800920 1130532 complement(1865699..1867438) 1 NC_003212.1 highly similar to adenine deaminases; hypothetical protein 1867438 1130532 lin1853 Listeria innocua Clip11262 hypothetical protein NP_471188.1 1865699 R 272626 CDS NP_471189.1 16800921 1130533 complement(1867459..1867917) 1 NC_003212.1 lin1854; hypothetical protein 1867917 1130533 lin1854 Listeria innocua Clip11262 hypothetical protein NP_471189.1 1867459 R 272626 CDS NP_471190.1 16800922 1130534 complement(1867938..1868813) 1 NC_003212.1 hypothetical protein 1868813 1130534 lin1855 Listeria innocua Clip11262 hypothetical protein NP_471190.1 1867938 R 272626 CDS NP_471191.1 16800923 1130535 complement(1868885..1869562) 1 NC_003212.1 similar to two-component response regulator; hypothetical protein 1869562 1130535 lin1856 Listeria innocua Clip11262 hypothetical protein NP_471191.1 1868885 R 272626 CDS NP_471192.1 16800924 1130536 complement(1869624..1871636) 1 NC_003212.1 similar to ABC transporter (permease); hypothetical protein 1871636 1130536 lin1857 Listeria innocua Clip11262 hypothetical protein NP_471192.1 1869624 R 272626 CDS NP_471193.1 16800925 1130537 complement(1871593..1872360) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 1872360 1130537 lin1859 Listeria innocua Clip11262 hypothetical protein NP_471193.1 1871593 R 272626 CDS NP_471194.1 16800926 1130539 complement(1872490..1872999) 1 NC_003212.1 lin1860; hypothetical protein 1872999 1130539 lin1860 Listeria innocua Clip11262 hypothetical protein NP_471194.1 1872490 R 272626 CDS NP_471195.1 16800927 1130540 1873221..1873694 1 NC_003212.1 similar to shikimate kinase; hypothetical protein 1873694 1130540 lin1861 Listeria innocua Clip11262 hypothetical protein NP_471195.1 1873221 D 272626 CDS NP_471196.1 16800928 1130541 complement(1873727..1874281) 1 NC_003212.1 hypothetical protein 1874281 1130541 lin1862 Listeria innocua Clip11262 hypothetical protein NP_471196.1 1873727 R 272626 CDS NP_471197.1 16800929 1130542 complement(1874624..1875985) 1 NC_003212.1 Uncharacterized RNA methyltransferase lin1863; hypothetical protein 1875985 1130542 lin1863 Listeria innocua Clip11262 hypothetical protein NP_471197.1 1874624 R 272626 CDS NP_471198.1 16800930 1130543 complement(1876009..1876764) 1 NC_003212.1 lin1864; hypothetical protein 1876764 1130543 lin1864 Listeria innocua Clip11262 hypothetical protein NP_471198.1 1876009 R 272626 CDS NP_471199.1 16800931 1130544 complement(1876912..1877844) 1 NC_003212.1 similar to YegS from E. coli; putative lipid kinase 1877844 1130544 lin1865 Listeria innocua Clip11262 putative lipid kinase NP_471199.1 1876912 R 272626 CDS NP_471200.1 16800932 1130545 complement(1877986..1879416) 1 NC_003212.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1879416 gatB 1130545 gatB Listeria innocua Clip11262 aspartyl/glutamyl-tRNA amidotransferase subunit B NP_471200.1 1877986 R 272626 CDS NP_471201.1 16800933 1130546 complement(1879428..1880879) 1 NC_003212.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1880879 gatA 1130546 gatA Listeria innocua Clip11262 aspartyl/glutamyl-tRNA amidotransferase subunit A NP_471201.1 1879428 R 272626 CDS NP_471202.1 16800934 1130547 complement(1880903..1881196) 1 NC_003212.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1881196 gatC 1130547 gatC Listeria innocua Clip11262 aspartyl/glutamyl-tRNA amidotransferase subunit C NP_471202.1 1880903 R 272626 CDS NP_471203.1 16800935 1130548 complement(1881320..1882435) 1 NC_003212.1 hypothetical protein 1882435 1130548 lin1869 Listeria innocua Clip11262 hypothetical protein NP_471203.1 1881320 R 272626 CDS NP_471204.1 16800936 1130549 complement(1882432..1884447) 1 NC_003212.1 similar to DNA ligase; this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1884447 ligA 1130549 ligA Listeria innocua Clip11262 NAD-dependent DNA ligase LigA NP_471204.1 1882432 R 272626 CDS NP_471205.1 16800937 1130551 complement(1884471..1886666) 1 NC_003212.1 ATP-dependent DNA helicase 1886666 pcrA 1130551 pcrA Listeria innocua Clip11262 ATP-dependent DNA helicase NP_471205.1 1884471 R 272626 CDS NP_471206.1 16800938 1130552 complement(1886731..1887408) 1 NC_003212.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase-like protein 1887408 1130552 lin1872 Listeria innocua Clip11262 geranylgeranylglyceryl phosphate synthase-like protein NP_471206.1 1886731 R 272626 CDS NP_471207.1 16800939 1130553 1887616..1888971 1 NC_003212.1 similar to putative sodium-dependent transporter; hypothetical protein 1888971 1130553 lin1873 Listeria innocua Clip11262 hypothetical protein NP_471207.1 1887616 D 272626 CDS NP_471208.1 16800940 1130554 complement(1889013..1889267) 1 NC_003212.1 lin1874; hypothetical protein 1889267 1130554 lin1874 Listeria innocua Clip11262 hypothetical protein NP_471208.1 1889013 R 272626 CDS NP_471209.1 16800941 1130555 complement(1889286..1889582) 1 NC_003212.1 hypothetical protein 1889582 1130555 lin1875 Listeria innocua Clip11262 hypothetical protein NP_471209.1 1889286 R 272626 CDS NP_471210.1 16800942 1130556 complement(1889720..1890982) 1 NC_003212.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1890982 purD 1130556 purD Listeria innocua Clip11262 phosphoribosylamine--glycine ligase NP_471210.1 1889720 R 272626 CDS NP_471211.1 16800943 1130557 complement(1891009..1892538) 1 NC_003212.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1892538 purH 1130557 purH Listeria innocua Clip11262 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase NP_471211.1 1891009 R 272626 CDS NP_471212.1 16800944 1130558 complement(1892544..1893110) 1 NC_003212.1 highly similar to phosphoribosylglycinamide formyltransferases; hypothetical protein 1893110 1130558 lin1878 Listeria innocua Clip11262 hypothetical protein NP_471212.1 1892544 R 272626 CDS NP_471213.1 16800945 1130560 complement(1893107..1894153) 1 NC_003212.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1894153 purM 1130560 purM Listeria innocua Clip11262 phosphoribosylaminoimidazole synthetase NP_471213.1 1893107 R 272626 CDS NP_471214.1 16800946 1130562 complement(1894172..1895599) 1 NC_003212.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1895599 purF 1130562 purF Listeria innocua Clip11262 amidophosphoribosyltransferase NP_471214.1 1894172 R 272626 CDS NP_471215.1 16800947 1130563 complement(1895584..1897803) 1 NC_003212.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1897803 purQ 1130563 purQ Listeria innocua Clip11262 phosphoribosylformylglycinamidine synthase II NP_471215.1 1895584 R 272626 CDS NP_471216.1 16800948 1130564 complement(1897796..1898479) 1 NC_003212.1 similar to phosphoribosylformylglycinamidine synthetase II; catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 1898479 1130564 lin1882 Listeria innocua Clip11262 phosphoribosylformylglycinamidine synthase I NP_471216.1 1897796 R 272626 CDS NP_471217.1 16800949 1130566 complement(1898483..1898728) 1 NC_003212.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS 1898728 1130566 lin1883 Listeria innocua Clip11262 phosphoribosylformylglycinamidine synthase subunit PurS NP_471217.1 1898483 R 272626 CDS NP_471218.1 16800950 1130568 complement(1898740..1899453) 1 NC_003212.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1899453 purC 1130568 purC Listeria innocua Clip11262 phosphoribosylaminoimidazole-succinocarboxamide synthase NP_471218.1 1898740 R 272626 CDS NP_471219.1 16800951 1130569 complement(1899534..1900826) 1 NC_003212.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1900826 purB 1130569 purB Listeria innocua Clip11262 adenylosuccinate lyase NP_471219.1 1899534 R 272626 CDS NP_471220.1 16800952 1130570 complement(1900845..1901969) 1 NC_003212.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1901969 purK 1130570 purK Listeria innocua Clip11262 phosphoribosylaminoimidazole carboxylase ATPase subunit NP_471220.1 1900845 R 272626 CDS NP_471221.1 16800953 1130571 complement(1901962..1902450) 1 NC_003212.1 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 1902450 purE 1130571 purE Listeria innocua Clip11262 phosphoribosylaminoimidazole carboxylase catalytic subunit NP_471221.1 1901962 R 272626 CDS NP_471222.1 16800954 1130573 complement(1902664..1903188) 1 NC_003212.1 hypothetical protein 1903188 1130573 lin1888 Listeria innocua Clip11262 hypothetical protein NP_471222.1 1902664 R 272626 CDS NP_471223.1 16800955 1130577 complement(1908589..1909194) 1 NC_003212.1 hypothetical protein 1909194 1130577 lin1889 Listeria innocua Clip11262 hypothetical protein NP_471223.1 1908589 R 272626 CDS NP_471224.1 16800956 1130578 1909259..1910032 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 1910032 1130578 lin1890 Listeria innocua Clip11262 hypothetical protein NP_471224.1 1909259 D 272626 CDS NP_471225.1 16800957 1130579 1910083..1910439 1 NC_003212.1 lin1891; hypothetical protein 1910439 1130579 lin1891 Listeria innocua Clip11262 hypothetical protein NP_471225.1 1910083 D 272626 CDS NP_471226.1 16800958 1130580 complement(1910463..1911695) 1 NC_003212.1 similar to aminotripeptidase (peptidase T); catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1911695 1130580 lin1892 Listeria innocua Clip11262 peptidase T NP_471226.1 1910463 R 272626 CDS NP_471227.1 16800959 1130581 complement(1911753..1912283) 1 NC_003212.1 lin1893; hypothetical protein 1912283 1130581 lin1893 Listeria innocua Clip11262 hypothetical protein NP_471227.1 1911753 R 272626 CDS NP_471228.1 16800960 1130582 1912366..1913121 1 NC_003212.1 similar to 3'-exo-deoxyribonuclease exoA; hypothetical protein 1913121 1130582 lin1894 Listeria innocua Clip11262 hypothetical protein NP_471228.1 1912366 D 272626 CDS NP_471229.1 16800961 1130583 complement(1913162..1913521) 1 NC_003212.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1913521 rplT 1130583 rplT Listeria innocua Clip11262 50S ribosomal protein L20 NP_471229.1 1913162 R 272626 CDS NP_471230.1 16800962 1130584 complement(1913561..1913761) 1 NC_003212.1 50S ribosomal protein L35 1913761 rpmI 1130584 rpmI Listeria innocua Clip11262 50S ribosomal protein L35 NP_471230.1 1913561 R 272626 CDS NP_471231.1 16800963 1130585 complement(1913783..1914298) 1 NC_003212.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1914298 infC 1130585 infC Listeria innocua Clip11262 translation initiation factor IF-3 NP_471231.1 1913783 R 272626 CDS NP_471232.1 16800964 1130586 complement(1914593..1915126) 1 NC_003212.1 similar to putative NAD(P)H oxidoreductase; hypothetical protein 1915126 1130586 lin1898 Listeria innocua Clip11262 hypothetical protein NP_471232.1 1914593 R 272626 CDS NP_471233.1 16800965 1130587 1915276..1915638 1 NC_003212.1 hypothetical protein 1915638 1130587 lin1899 Listeria innocua Clip11262 hypothetical protein NP_471233.1 1915276 D 272626 CDS NP_471234.1 16800966 1130588 complement(1915670..1916245) 1 NC_003212.1 hypothetical protein 1916245 1130588 lin1900 Listeria innocua Clip11262 hypothetical protein NP_471234.1 1915670 R 272626 CDS NP_471235.1 16800967 1130589 complement(1916347..1916691) 1 NC_003212.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1916691 rplS 1130589 rplS Listeria innocua Clip11262 50S ribosomal protein L19 NP_471235.1 1916347 R 272626 CDS NP_471236.1 16800968 1130590 1916898..1917332 1 NC_003212.1 similar to transcription regulator; hypothetical protein 1917332 1130590 lin1902 Listeria innocua Clip11262 hypothetical protein NP_471236.1 1916898 D 272626 CDS NP_471237.1 16800969 1130591 1917332..1917919 1 NC_003212.1 weakly similar to Nad(P)h Oxidoreductase chain B; hypothetical protein 1917919 1130591 lin1903 Listeria innocua Clip11262 hypothetical protein NP_471237.1 1917332 D 272626 CDS NP_471238.1 16800970 1130592 1917940..1918656 1 NC_003212.1 hypothetical protein 1918656 1130592 lin1904 Listeria innocua Clip11262 hypothetical protein NP_471238.1 1917940 D 272626 CDS NP_471239.1 16800971 1130593 complement(1918688..1919077) 1 NC_003212.1 lin1905; hypothetical protein 1919077 1130593 lin1905 Listeria innocua Clip11262 hypothetical protein NP_471239.1 1918688 R 272626 CDS NP_471240.1 16800972 1130594 complement(1919096..1919833) 1 NC_003212.1 similar to Escherichia coli tRNA (guanine-N1) methyltransferase; methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1919833 trmD 1130594 trmD Listeria innocua Clip11262 tRNA (guanine-N(1)-)-methyltransferase NP_471240.1 1919096 R 272626 CDS NP_471241.1 16800973 1130595 complement(1919833..1920351) 1 NC_003212.1 similar to putative 16S rRNA processing protein RimM; Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1920351 rimM 1130595 rimM Listeria innocua Clip11262 16S rRNA-processing protein RimM NP_471241.1 1919833 R 272626 CDS NP_471242.1 16800974 1130596 complement(1920361..1920747) 1 NC_003212.1 hypothetical protein 1920747 1130596 lin1908 Listeria innocua Clip11262 hypothetical protein NP_471242.1 1920361 R 272626 CDS NP_471243.1 16800975 1130597 complement(1920775..1921509) 1 NC_003212.1 hypothetical protein 1921509 1130597 lin1909 Listeria innocua Clip11262 hypothetical protein NP_471243.1 1920775 R 272626 CDS NP_471244.1 16800976 1130598 complement(1921619..1921849) 1 NC_003212.1 hypothetical protein 1921849 1130598 lin1910 Listeria innocua Clip11262 hypothetical protein NP_471244.1 1921619 R 272626 CDS NP_471245.1 16800977 1130599 complement(1921866..1922138) 1 NC_003212.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1922138 rpsP 1130599 rpsP Listeria innocua Clip11262 30S ribosomal protein S16 NP_471245.1 1921866 R 272626 CDS NP_471246.1 16800978 1130600 complement(1922241..1923899) 1 NC_003212.1 hypothetical protein 1923899 1130600 lin1912 Listeria innocua Clip11262 hypothetical protein NP_471246.1 1922241 R 272626 CDS NP_471247.1 16800979 1130601 complement(1923973..1926621) 1 NC_003212.1 peptidoglycan binding protein 1926621 1130601 lin1913 Listeria innocua Clip11262 peptidoglycan binding protein NP_471247.1 1923973 R 272626 CDS NP_471248.1 16800980 1130602 complement(1927111..1928007) 1 NC_003212.1 similar to protein-tyrosine phosphatase; hypothetical protein 1928007 1130602 lin1914 Listeria innocua Clip11262 hypothetical protein NP_471248.1 1927111 R 272626 CDS NP_471249.1 16800981 1130603 complement(1928149..1929501) 1 NC_003212.1 similar to signal recognition particle protein Ffh; hypothetical protein 1929501 1130603 lin1915 Listeria innocua Clip11262 hypothetical protein NP_471249.1 1928149 R 272626 CDS NP_471250.1 16800982 1130604 complement(1929514..1929846) 1 NC_003212.1 putative DNA-binding protein 1929846 1130604 lin1916 Listeria innocua Clip11262 putative DNA-binding protein NP_471250.1 1929514 R 272626 CDS NP_471251.1 16800983 1130605 complement(1929959..1930945) 1 NC_003212.1 similar to FtsY of Escherichia coli and SRP receptor alpha-subunit; hypothetical protein 1930945 1130605 lin1917 Listeria innocua Clip11262 hypothetical protein NP_471251.1 1929959 R 272626 CDS NP_471252.1 16800984 1130606 complement(1930960..1934520) 1 NC_003212.1 similar to Smc protein essential for chromosome condensation and partition; hypothetical protein 1934520 1130606 lin1918 Listeria innocua Clip11262 hypothetical protein NP_471252.1 1930960 R 272626 CDS NP_471253.1 16800985 1130607 complement(1934543..1935232) 1 NC_003212.1 similar to ribonuclease III; cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1935232 rnc 1130607 rnc Listeria innocua Clip11262 ribonuclease III NP_471253.1 1934543 R 272626 CDS NP_471254.1 16800986 1130608 complement(1935430..1935663) 1 NC_003212.1 highly similar to acyl carrier proteins; carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1935663 acpP 1130608 acpP Listeria innocua Clip11262 acyl carrier protein NP_471254.1 1935430 R 272626 CDS NP_471255.1 16800987 1130609 complement(1935770..1936513) 1 NC_003212.1 similar to 3-ketoacyl-acyl carrier protein reductase; hypothetical protein 1936513 1130609 lin1921 Listeria innocua Clip11262 hypothetical protein NP_471255.1 1935770 R 272626 CDS NP_471256.1 16800988 1130610 complement(1936517..1937458) 1 NC_003212.1 similar to malonyl CoA-acyl carrier protein transacylase; acyl-carrier-protein S-malonyltransferase 1937458 1130610 lin1922 Listeria innocua Clip11262 acyl-carrier-protein S-malonyltransferase NP_471256.1 1936517 R 272626 CDS NP_471257.1 16800989 1130612 complement(1937451..1938464) 1 NC_003212.1 similar to plsX protein involved in fatty acid/phospholipid synthesis; involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1938464 1130612 lin1923 Listeria innocua Clip11262 putative glycerol-3-phosphate acyltransferase PlsX NP_471257.1 1937451 R 272626 CDS NP_471258.1 16800990 1130614 complement(1938485..1939054) 1 NC_003212.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1939054 1130614 lin1924 Listeria innocua Clip11262 fatty acid biosynthesis transcriptional regulator NP_471258.1 1938485 R 272626 CDS NP_471259.1 16800991 1130615 complement(1939235..1941283) 1 NC_003212.1 similar to ATP-dependent DNA helicase recG; catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1941283 1130615 lin1925 Listeria innocua Clip11262 ATP-dependent DNA helicase RecG NP_471259.1 1939235 R 272626 CDS NP_471260.1 16800992 1130616 complement(1941276..1942166) 1 NC_003212.1 similar to L-serine dehydratase; hypothetical protein 1942166 1130616 lin1926 Listeria innocua Clip11262 hypothetical protein NP_471260.1 1941276 R 272626 CDS NP_471261.1 16800993 1130617 complement(1942313..1942975) 1 NC_003212.1 similar to phosphoglycerate dehydrogenase; hypothetical protein 1942975 1130617 lin1927 Listeria innocua Clip11262 hypothetical protein NP_471261.1 1942313 R 272626 CDS NP_471262.1 16800994 1130618 complement(1943014..1944672) 1 NC_003212.1 hypothetical protein 1944672 1130618 lin1928 Listeria innocua Clip11262 hypothetical protein NP_471262.1 1943014 R 272626 CDS NP_471263.1 16800995 1130619 complement(1944687..1945052) 1 NC_003212.1 hypothetical protein 1945052 1130619 lin1929 Listeria innocua Clip11262 hypothetical protein NP_471263.1 1944687 R 272626 CDS NP_471264.1 16800996 1130620 1945351..1945539 1 NC_003212.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1945539 rpmB 1130620 rpmB Listeria innocua Clip11262 50S ribosomal protein L28 NP_471264.1 1945351 D 272626 CDS NP_471265.1 16800997 1130621 complement(1945635..1946279) 1 NC_003212.1 weakly similar to thiamin pyrophosphokinase; hypothetical protein 1946279 1130621 lin1931 Listeria innocua Clip11262 hypothetical protein NP_471265.1 1945635 R 272626 CDS NP_471266.1 16800998 1130622 complement(1946345..1947001) 1 NC_003212.1 similar to ribulose-5-phosphate 3-epimerase; catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1947001 1130622 lin1932 Listeria innocua Clip11262 ribulose-phosphate 3-epimerase NP_471266.1 1946345 R 272626 CDS NP_471267.1 16800999 1130623 complement(1947004..1947879) 1 NC_003212.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1947879 1130623 lin1933 Listeria innocua Clip11262 ribosome-associated GTPase NP_471267.1 1947004 R 272626 CDS NP_471268.1 16801000 1130625 complement(1947899..1949872) 1 NC_003212.1 similar to putative serine/threonine-specific protein kinase; hypothetical protein 1949872 1130625 lin1934 Listeria innocua Clip11262 hypothetical protein NP_471268.1 1947899 R 272626 CDS NP_471269.1 16801001 1130626 complement(1949869..1950627) 1 NC_003212.1 similar to putative phosphoprotein phosphatase; hypothetical protein 1950627 1130626 lin1935 Listeria innocua Clip11262 hypothetical protein NP_471269.1 1949869 R 272626 CDS NP_471270.1 16801002 1130628 complement(1950642..1951982) 1 NC_003212.1 similar to RNA-binding Sun protein; hypothetical protein 1951982 1130628 lin1936 Listeria innocua Clip11262 hypothetical protein NP_471270.1 1950642 R 272626 CDS NP_471271.1 16801003 1130629 complement(1951983..1952921) 1 NC_003212.1 similar to methionyl-tRNA formyltransferase; hypothetical protein 1952921 1130629 lin1937 Listeria innocua Clip11262 hypothetical protein NP_471271.1 1951983 R 272626 CDS NP_471272.1 16801004 1130630 complement(1952935..1955328) 1 NC_003212.1 similar to primosomal replication factor Y; binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1955328 1130630 lin1938 Listeria innocua Clip11262 primosome assembly protein PriA NP_471272.1 1952935 R 272626 CDS NP_471273.1 16801005 1130631 complement(1955333..1956532) 1 NC_003212.1 similar to pantothenate metabolism flavoprotein homolog; hypothetical protein 1956532 1130631 lin1939 Listeria innocua Clip11262 hypothetical protein NP_471273.1 1955333 R 272626 CDS NP_471274.1 16801006 1130632 complement(1956686..1956889) 1 NC_003212.1 lin1940; Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1956889 rpoZ 1130632 rpoZ Listeria innocua Clip11262 DNA-directed RNA polymerase subunit omega NP_471274.1 1956686 R 272626 CDS NP_471275.1 16801007 1130633 complement(1956889..1957506) 1 NC_003212.1 similar to guanylate kinases; Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1957506 gmk 1130633 gmk Listeria innocua Clip11262 guanylate kinase NP_471275.1 1956889 R 272626 CDS NP_471276.1 16801008 1130635 complement(1957525..1958400) 1 NC_003212.1 similar to conserved hypothetical protein; hypothetical protein 1958400 1130635 lin1942 Listeria innocua Clip11262 hypothetical protein NP_471276.1 1957525 R 272626 CDS NP_471277.1 16801009 1130636 1958558..1960270 1 NC_003212.1 similar to fibronectin binding proteins; hypothetical protein 1960270 1130636 lin1943 Listeria innocua Clip11262 hypothetical protein NP_471277.1 1958558 D 272626 CDS NP_471278.1 16801010 1130637 1960358..1960957 1 NC_003212.1 similar to conserved hypotheticl proteins; short chain dehydrogenase 1960957 1130637 lin1944 Listeria innocua Clip11262 short chain dehydrogenase NP_471278.1 1960358 D 272626 CDS NP_471279.1 16801011 1130638 complement(1960994..1961623) 1 NC_003212.1 highly similar to orotate phosphoribosyltransferases; involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1961623 pyrE 1130638 pyrE Listeria innocua Clip11262 orotate phosphoribosyltransferase NP_471279.1 1960994 R 272626 CDS NP_471280.1 16801012 1130639 complement(1961620..1962321) 1 NC_003212.1 highly similar to orotidine 5'-phosphate decarboxylases; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1962321 1130639 lin1946 Listeria innocua Clip11262 orotidine 5'-phosphate decarboxylase NP_471280.1 1961620 R 272626 CDS NP_471281.1 16801013 1130641 complement(1962318..1963232) 1 NC_003212.1 highly similar to dihydroorotase dehydrogenase; catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1963232 1130641 lin1947 Listeria innocua Clip11262 dihydroorotate dehydrogenase 1B NP_471281.1 1962318 R 272626 CDS NP_471282.1 16801014 1130643 complement(1963229..1963993) 1 NC_003212.1 highly similar to dihydroorotate dehydrogenase (electron transfer subunit); hypothetical protein 1963993 1130643 lin1948 Listeria innocua Clip11262 hypothetical protein NP_471282.1 1963229 R 272626 CDS NP_471283.1 16801015 1130645 complement(1964016..1967228) 1 NC_003212.1 highly similar to carbamoyl-phosphate synthetase (catalytic subunit); four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1967228 carB 1130645 carB Listeria innocua Clip11262 carbamoyl phosphate synthase large subunit NP_471283.1 1964016 R 272626 CDS NP_471284.1 16801016 1130646 complement(1967221..1968312) 1 NC_003212.1 highly similar to carbamoyl-phosphate synthetase (glutaminase subunit); catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1968312 1130646 lin1950 Listeria innocua Clip11262 carbamoyl phosphate synthase small subunit NP_471284.1 1967221 R 272626 CDS NP_471285.1 16801017 1130647 complement(1968309..1969589) 1 NC_003212.1 highly similar to dihydroorotase; catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1969589 pyrC 1130647 pyrC Listeria innocua Clip11262 dihydroorotase NP_471285.1 1968309 R 272626 CDS NP_471286.1 16801018 1130648 complement(1969577..1970488) 1 NC_003212.1 highly similar to aspartate carbamoyltransferase; catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1970488 pyrB 1130648 pyrB Listeria innocua Clip11262 aspartate carbamoyltransferase catalytic subunit NP_471286.1 1969577 R 272626 CDS NP_471287.1 16801019 1130650 complement(1970567..1971853) 1 NC_003212.1 highly similar to uracil permease; hypothetical protein 1971853 1130650 lin1953 Listeria innocua Clip11262 hypothetical protein NP_471287.1 1970567 R 272626 CDS NP_471288.1 16801020 1130651 complement(1971982..1972533) 1 NC_003212.1 highly similar to pyrimidine operon regulatory protein; regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1972533 1130651 lin1954 Listeria innocua Clip11262 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase NP_471288.1 1971982 R 272626 CDS NP_471289.1 16801021 1130652 1972765..1972959 1 NC_003212.1 lin1955; hypothetical protein 1972959 1130652 lin1955 Listeria innocua Clip11262 hypothetical protein NP_471289.1 1972765 D 272626 CDS NP_471290.1 16801022 1130653 1973085..1973909 1 NC_003212.1 hypothetical protein 1973909 1130653 lin1956 Listeria innocua Clip11262 hypothetical protein NP_471290.1 1973085 D 272626 CDS NP_471291.1 16801023 1130654 complement(1973927..1974835) 1 NC_003212.1 hypothetical protein 1974835 1130654 lin1957 Listeria innocua Clip11262 hypothetical protein NP_471291.1 1973927 R 272626 CDS NP_471292.1 16801024 1130655 complement(1974835..1975299) 1 NC_003212.1 highly similar to signal peptidase II; lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1975299 lspA 1130655 lspA Listeria innocua Clip11262 lipoprotein signal peptidase NP_471292.1 1974835 R 272626 CDS NP_471293.1 16801025 1130657 complement(1975381..1976664) 1 NC_003212.1 hypothetical protein 1976664 1130657 lin1959 Listeria innocua Clip11262 hypothetical protein NP_471293.1 1975381 R 272626 CDS NP_471294.1 16801026 1130658 1976838..1978208 1 NC_003212.1 Probable multidrug resistance protein norM (Multidrug-efflux transporter); NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1978208 1130658 lin1960 Listeria innocua Clip11262 multidrug efflux protein NP_471294.1 1976838 D 272626 CDS NP_471295.1 16801027 1130659 complement(1978222..1979154) 1 NC_003212.1 similar to adhesion binding proteins and lipoproteins with multiple specificity for metal cations (ABC transporter); hypothetical protein 1979154 1130659 lin1961 Listeria innocua Clip11262 hypothetical protein NP_471295.1 1978222 R 272626 CDS NP_471296.1 16801028 1130660 complement(1979151..1979993) 1 NC_003212.1 similar metal cations ABC transporter (permease protein); hypothetical protein 1979993 1130660 lin1962 Listeria innocua Clip11262 hypothetical protein NP_471296.1 1979151 R 272626 CDS NP_471297.1 16801029 1130662 complement(1979996..1980718) 1 NC_003212.1 similar to metal cations ABC transporter, ATP-binding proteins; hypothetical protein 1980718 1130662 lin1963 Listeria innocua Clip11262 hypothetical protein NP_471297.1 1979996 R 272626 CDS NP_471298.1 16801030 1130664 complement(1980872..1981294) 1 NC_003212.1 similar to transcriptional regulator (MarR family); hypothetical protein 1981294 1130664 lin1964 Listeria innocua Clip11262 hypothetical protein NP_471298.1 1980872 R 272626 CDS NP_471299.1 16801031 1130665 complement(1981333..1982823) 1 NC_003212.1 similar to carboxy-terminal processing proteinase; hypothetical protein 1982823 1130665 lin1965 Listeria innocua Clip11262 hypothetical protein NP_471299.1 1981333 R 272626 CDS NP_471300.1 16801032 1130666 complement(1982976..1983182) 1 NC_003212.1 similar to putative mercuric ion binding proteins; hypothetical protein 1983182 1130666 lin1966 Listeria innocua Clip11262 hypothetical protein NP_471300.1 1982976 R 272626 CDS NP_471301.1 16801033 1130667 complement(1983195..1985408) 1 NC_003212.1 similar to heavy metal-transporting ATPases; hypothetical protein 1985408 1130667 lin1967 Listeria innocua Clip11262 hypothetical protein NP_471301.1 1983195 R 272626 CDS NP_471302.1 16801034 1130668 complement(1985423..1985716) 1 NC_003212.1 hypothetical protein 1985716 1130668 lin1968 Listeria innocua Clip11262 hypothetical protein NP_471302.1 1985423 R 272626 CDS NP_471303.1 16801035 1130669 complement(1985841..1986665) 1 NC_003212.1 similar to similar to D-alanyl-D-alanine carboxypeptidases; hypothetical protein 1986665 1130669 lin1969 Listeria innocua Clip11262 hypothetical protein NP_471303.1 1985841 R 272626 CDS NP_471304.1 16801036 1130670 complement(1986723..1987424) 1 NC_003212.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1987424 deoD 1130670 deoD Listeria innocua Clip11262 purine nucleoside phosphorylase NP_471304.1 1986723 R 272626 CDS NP_471305.1 16801037 1130671 complement(1987437..1987670) 1 NC_003212.1 similar to hypoyhetical protein; hypothetical protein 1987670 1130671 lin1971 Listeria innocua Clip11262 hypothetical protein NP_471305.1 1987437 R 272626 CDS NP_471306.1 16801038 1130672 complement(1987733..1988638) 1 NC_003212.1 similar to dehydogenases and hypothetical proteins; hypothetical protein 1988638 1130672 lin1972 Listeria innocua Clip11262 hypothetical protein NP_471306.1 1987733 R 272626 CDS NP_471307.1 16801039 1130673 complement(1988722..1989159) 1 NC_003212.1 similar to transcriptional regulator (PilB family); this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1989159 1130673 lin1973 Listeria innocua Clip11262 methionine sulfoxide reductase B NP_471307.1 1988722 R 272626 CDS NP_471308.1 16801040 1130674 complement(1989166..1989699) 1 NC_003212.1 similar to peptidyl methionine sulfoxide reductases; this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 1989699 1130674 lin1974 Listeria innocua Clip11262 methionine sulfoxide reductase A NP_471308.1 1989166 R 272626 CDS NP_471309.1 16801041 1130676 complement(1989736..1990350) 1 NC_003212.1 hypothetical protein 1990350 1130676 lin1975 Listeria innocua Clip11262 hypothetical protein NP_471309.1 1989736 R 272626 CDS NP_471310.1 16801042 1130677 complement(1990366..1991151) 1 NC_003212.1 hypothetical protein 1991151 1130677 lin1976 Listeria innocua Clip11262 hypothetical protein NP_471310.1 1990366 R 272626 CDS NP_471311.1 16801043 1130678 complement(1991166..1992005) 1 NC_003212.1 hypothetical protein 1992005 1130678 lin1977 Listeria innocua Clip11262 hypothetical protein NP_471311.1 1991166 R 272626 CDS NP_471312.1 16801044 1130679 1992187..1992819 1 NC_003212.1 similar to hemolysinIII proteins, putative integral membrane protein; hypothetical protein 1992819 1130679 lin1978 Listeria innocua Clip11262 hypothetical protein NP_471312.1 1992187 D 272626 CDS NP_471313.1 16801045 1130680 1992940..1993569 1 NC_003212.1 hypothetical protein 1993569 1130680 lin1979 Listeria innocua Clip11262 hypothetical protein NP_471313.1 1992940 D 272626 CDS NP_471314.1 16801046 1130681 1993582..1994394 1 NC_003212.1 hypothetical protein 1994394 1130681 lin1980 Listeria innocua Clip11262 hypothetical protein NP_471314.1 1993582 D 272626 CDS NP_471315.1 16801047 1130682 1994413..1997052 1 NC_003212.1 similar to pyruvate phosphate dikinase; catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1997052 1130682 lin1981 Listeria innocua Clip11262 pyruvate phosphate dikinase NP_471315.1 1994413 D 272626 CDS NP_471316.1 16801048 1130683 complement(1997097..1997474) 1 NC_003212.1 hypothetical protein 1997474 1130683 lin1982 Listeria innocua Clip11262 hypothetical protein NP_471316.1 1997097 R 272626 CDS NP_471317.1 16801049 1130684 complement(1997478..1998461) 1 NC_003212.1 similar to conserved hypothetical proteins, putative integral membrane protein; hypothetical protein 1998461 1130684 lin1983 Listeria innocua Clip11262 hypothetical protein NP_471317.1 1997478 R 272626 CDS NP_471318.1 16801050 1130685 complement(1998555..1999178) 1 NC_003212.1 similar to alkaline phosphatase; hypothetical protein 1999178 1130685 lin1984 Listeria innocua Clip11262 hypothetical protein NP_471318.1 1998555 R 272626 CDS NP_471319.1 16801051 1130686 complement(1999318..2000829) 1 NC_003212.1 similar to phosphoglucomutases; hypothetical protein 2000829 1130686 lin1985 Listeria innocua Clip11262 hypothetical protein NP_471319.1 1999318 R 272626 CDS NP_471320.1 16801052 1130687 complement(2000898..2001773) 1 NC_003212.1 similar to methyltransferases; hypothetical protein 2001773 1130687 lin1986 Listeria innocua Clip11262 hypothetical protein NP_471320.1 2000898 R 272626 CDS NP_471321.1 16801053 1130688 complement(2001826..2002308) 1 NC_003212.1 similar to dihydrofolate reductases; hypothetical protein 2002308 1130688 lin1987 Listeria innocua Clip11262 hypothetical protein NP_471321.1 2001826 R 272626 CDS NP_471322.1 16801054 1130689 complement(2002324..2003268) 1 NC_003212.1 similar to thymidylate synthase; ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 2003268 thyA 1130689 thyA Listeria innocua Clip11262 thymidylate synthase NP_471322.1 2002324 R 272626 CDS NP_471323.1 16801055 1130690 complement(2003281..2005173) 1 NC_003212.1 similar to putative ABC transporters (ATP-binding protein); hypothetical protein 2005173 1130690 lin1989 Listeria innocua Clip11262 hypothetical protein NP_471323.1 2003281 R 272626 CDS NP_471324.1 16801056 1130691 complement(2005293..2006975) 1 NC_003212.1 similar to formyl-tetrahydrofolate synthetase; catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 2006975 1130691 lin1990 Listeria innocua Clip11262 formate--tetrahydrofolate ligase NP_471324.1 2005293 R 272626 CDS NP_471325.1 16801057 1130692 complement(2007135..2007563) 1 NC_003212.1 similar o transcriptional regulators; involved in manganese homeostasis; activates the transcription of the mntABCD operon; manganese transport transcriptional regulator 2007563 1130692 lin1991 Listeria innocua Clip11262 manganese transport transcriptional regulator NP_471325.1 2007135 R 272626 CDS NP_471326.1 16801058 1130693 2007937..2008137 1 NC_003212.1 similar to cold shock protein; hypothetical protein 2008137 1130693 lin1992 Listeria innocua Clip11262 hypothetical protein NP_471326.1 2007937 D 272626 CDS NP_471327.1 16801059 1130694 2008260..2008661 1 NC_003212.1 similar to similar to RNase HI; hypothetical protein 2008661 1130694 lin1993 Listeria innocua Clip11262 hypothetical protein NP_471327.1 2008260 D 272626 CDS NP_471328.1 16801060 1130695 complement(2008679..2009551) 1 NC_003212.1 similar to 5'-3' exonuclease; hypothetical protein 2009551 1130695 lin1994 Listeria innocua Clip11262 hypothetical protein NP_471328.1 2008679 R 272626 CDS NP_471329.1 16801061 1130696 complement(2009629..2009898) 1 NC_003212.1 similar to ribosomal protein S14; located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 2009898 rpsN 1130696 rpsN Listeria innocua Clip11262 30S ribosomal protein S14 NP_471329.1 2009629 R 272626 CDS NP_471330.1 16801062 1130697 complement(2010021..2011079) 1 NC_003212.1 similar to chitinases; hypothetical protein 2011079 1130697 lin1996 Listeria innocua Clip11262 hypothetical protein NP_471330.1 2010021 R 272626 CDS NP_471331.1 16801063 1130698 complement(2011271..2012578) 1 NC_003212.1 similar to xanthine permeases; hypothetical protein 2012578 1130698 lin1997 Listeria innocua Clip11262 hypothetical protein NP_471331.1 2011271 R 272626 CDS NP_471332.1 16801064 1130699 complement(2012585..2013163) 1 NC_003212.1 similar to xanthine phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 2013163 1130699 lin1998 Listeria innocua Clip11262 xanthine phosphoribosyltransferase NP_471332.1 2012585 R 272626 CDS NP_471333.1 16801065 1130701 complement(2013391..2014899) 1 NC_003212.1 similar to probable thermostable carboxypeptidases; hypothetical protein 2014899 1130701 lin1999 Listeria innocua Clip11262 hypothetical protein NP_471333.1 2013391 R 272626 CDS NP_471334.1 16801066 1130702 complement(2014915..2016063) 1 NC_003212.1 hypothetical protein 2016063 1130702 lin2000 Listeria innocua Clip11262 hypothetical protein NP_471334.1 2014915 R 272626 CDS NP_471335.1 16801067 1130703 complement(2016139..2016423) 1 NC_003212.1 hypothetical protein 2016423 1130703 lin2001 Listeria innocua Clip11262 hypothetical protein NP_471335.1 2016139 R 272626 CDS NP_471336.1 16801068 1130704 complement(2016643..2016984) 1 NC_003212.1 hypothetical protein 2016984 1130704 lin2002 Listeria innocua Clip11262 hypothetical protein NP_471336.1 2016643 R 272626 CDS NP_471337.1 16801069 1130705 complement(2017116..2017661) 1 NC_003212.1 hypothetical protein 2017661 1130705 lin2003 Listeria innocua Clip11262 hypothetical protein NP_471337.1 2017116 R 272626 CDS NP_471338.1 16801070 1130706 complement(2017658..2018023) 1 NC_003212.1 hypothetical protein 2018023 1130706 lin2004 Listeria innocua Clip11262 hypothetical protein NP_471338.1 2017658 R 272626 CDS NP_471339.1 16801071 1130707 2018270..2018875 1 NC_003212.1 similar to DNA repair and homologous recombination protein; functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 2018875 recU 1130707 recU Listeria innocua Clip11262 Holliday junction-specific endonuclease NP_471339.1 2018270 D 272626 CDS NP_471340.1 16801072 1130708 2018907..2021387 1 NC_003212.1 similar to penicillin-binding protein 2A; hypothetical protein 2021387 1130708 lin2006 Listeria innocua Clip11262 hypothetical protein NP_471340.1 2018907 D 272626 CDS NP_471341.1 16801073 1130709 complement(2021431..2021922) 1 NC_003212.1 lin2007; hypothetical protein 2021922 1130709 lin2007 Listeria innocua Clip11262 hypothetical protein NP_471341.1 2021431 R 272626 CDS NP_471342.1 16801074 1130710 complement(2021915..2022574) 1 NC_003212.1 endonuclease III (DNA repair) 2022574 nth 1130710 nth Listeria innocua Clip11262 endonuclease III (DNA repair) NP_471342.1 2021915 R 272626 CDS NP_471343.1 16801075 1130712 complement(2022585..2023304) 1 NC_003212.1 similar to chromosome replication initiation protein; hypothetical protein 2023304 1130712 lin2009 Listeria innocua Clip11262 hypothetical protein NP_471343.1 2022585 R 272626 CDS NP_471344.1 16801076 1130714 complement(2023449..2024741) 1 NC_003212.1 similar to asparaginyl-tRNA synthetases; catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2024741 asnC 1130714 asnC Listeria innocua Clip11262 asparaginyl-tRNA synthetase NP_471344.1 2023449 R 272626 CDS NP_471345.1 16801077 1130715 complement(2024755..2025936) 1 NC_003212.1 similar to aspartate aminotransferases; catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2025936 1130715 lin2011 Listeria innocua Clip11262 aspartate aminotransferase NP_471345.1 2024755 R 272626 CDS NP_471346.1 16801078 1130716 complement(2025959..2026480) 1 NC_003212.1 hypothetical protein 2026480 1130716 lin2012 Listeria innocua Clip11262 hypothetical protein NP_471346.1 2025959 R 272626 CDS NP_471347.1 16801079 1130717 complement(2026589..2029375) 1 NC_003212.1 similar to ATP-dependent helicases; unwinds DNA; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon 2029375 1130717 lin2013 Listeria innocua Clip11262 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon NP_471347.1 2026589 R 272626 CDS NP_471348.1 16801080 1130718 complement(2029472..2029855) 1 NC_003212.1 similar to aspartate 1-decarboxylases; Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2029855 1130718 lin2014 Listeria innocua Clip11262 aspartate alpha-decarboxylase NP_471348.1 2029472 R 272626 CDS NP_471349.1 16801081 1130719 complement(2029859..2030716) 1 NC_003212.1 similar to panthotenate synthetases; catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2030716 panC 1130719 panC Listeria innocua Clip11262 pantoate--beta-alanine ligase NP_471349.1 2029859 R 272626 CDS NP_471350.1 16801082 1130721 complement(2030720..2031553) 1 NC_003212.1 similar to ketopantoate hydroxymethyltransferases; catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2031553 panB 1130721 panB Listeria innocua Clip11262 3-methyl-2-oxobutanoate hydroxymethyltransferase NP_471350.1 2030720 R 272626 CDS NP_471351.1 16801083 1130723 complement(2031720..2032193) 1 NC_003212.1 similar to thioredoxin; hypothetical protein 2032193 1130723 lin2017 Listeria innocua Clip11262 hypothetical protein NP_471351.1 2031720 R 272626 CDS NP_471352.1 16801084 1130724 complement(2032341..2033318) 1 NC_003212.1 similar to transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase; hypothetical protein 2033318 1130724 lin2018 Listeria innocua Clip11262 hypothetical protein NP_471352.1 2032341 R 272626 CDS NP_471353.1 16801085 1130725 complement(2033308..2034489) 1 NC_003212.1 similar to tRNA CCA-adding enzyme; catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 2034489 1130725 lin2019 Listeria innocua Clip11262 tRNA CCA-pyrophosphorylase NP_471353.1 2033308 R 272626 CDS NP_471354.1 16801086 1130727 complement(2034504..2034908) 1 NC_003212.1 similar to methylglyoxal synthase; catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 2034908 mgsA 1130727 mgsA Listeria innocua Clip11262 methylglyoxal synthase NP_471354.1 2034504 R 272626 CDS NP_471355.1 16801087 1130728 complement(2034924..2035715) 1 NC_003212.1 similar to dihydrodipicolinate reductase; catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2035715 1130728 lin2021 Listeria innocua Clip11262 dihydrodipicolinate reductase NP_471355.1 2034924 R 272626 CDS NP_471356.1 16801088 1130729 complement(2035712..2036047) 1 NC_003212.1 hypothetical protein 2036047 1130729 lin2022 Listeria innocua Clip11262 hypothetical protein NP_471356.1 2035712 R 272626 CDS NP_471357.1 16801089 1130731 2036188..2037054 1 NC_003212.1 hypothetical protein 2037054 1130731 lin2023 Listeria innocua Clip11262 hypothetical protein NP_471357.1 2036188 D 272626 CDS NP_471358.1 16801090 1130732 complement(2037044..2038150) 1 NC_003212.1 similar to oxidoreductases; hypothetical protein 2038150 1130732 lin2024 Listeria innocua Clip11262 hypothetical protein NP_471358.1 2037044 R 272626 CDS NP_471359.1 16801091 1130733 2038471..2039610 1 NC_003212.1 similar to unknown proteins (hypothetical sensory transduction histidine kinase); hypothetical protein 2039610 1130733 lin2025 Listeria innocua Clip11262 hypothetical protein NP_471359.1 2038471 D 272626 CDS NP_471360.1 16801092 1130734 2039631..2040758 1 NC_003212.1 similar to unknown proteins (hypothetical sensory transduction histidine kinase); hypothetical protein 2040758 1130734 lin2026 Listeria innocua Clip11262 hypothetical protein NP_471360.1 2039631 D 272626 CDS NP_471361.1 16801093 1130736 2040755..2041759 1 NC_003212.1 hypothetical protein 2041759 1130736 lin2027 Listeria innocua Clip11262 hypothetical protein NP_471361.1 2040755 D 272626 CDS NP_471362.1 16801094 1130737 2041778..2042461 1 NC_003212.1 hypothetical protein 2042461 1130737 lin2028 Listeria innocua Clip11262 hypothetical protein NP_471362.1 2041778 D 272626 CDS NP_471363.1 16801095 1130738 2042569..2044212 1 NC_003212.1 similar to malolactic enzyme (malate dehydrogenase); malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 2044212 1130738 lin2029 Listeria innocua Clip11262 malate dehydrogenase NP_471363.1 2042569 D 272626 CDS NP_471364.1 16801096 1130740 2044215..2045222 1 NC_003212.1 similar to peptidase; hypothetical protein 2045222 1130740 lin2030 Listeria innocua Clip11262 hypothetical protein NP_471364.1 2044215 D 272626 CDS NP_471365.1 16801097 1130741 2045430..2047709 1 NC_003212.1 similar to pyruvate formate-lyase; hypothetical protein 2047709 1130741 lin2031 Listeria innocua Clip11262 hypothetical protein NP_471365.1 2045430 D 272626 CDS NP_471366.1 16801098 1130742 complement(2047755..2049020) 1 NC_003212.1 hypothetical protein 2049020 1130742 lin2032 Listeria innocua Clip11262 hypothetical protein NP_471366.1 2047755 R 272626 CDS NP_471367.1 16801099 1130743 complement(2049132..2049815) 1 NC_003212.1 hypothetical protein 2049815 1130743 lin2033 Listeria innocua Clip11262 hypothetical protein NP_471367.1 2049132 R 272626 CDS NP_471368.1 16801100 1130744 complement(2049901..2050497) 1 NC_003212.1 hypothetical protein 2050497 1130744 lin2034 Listeria innocua Clip11262 hypothetical protein NP_471368.1 2049901 R 272626 CDS NP_471369.1 16801101 1130745 complement(2050585..2051130) 1 NC_003212.1 hypothetical protein 2051130 1130745 lin2035 Listeria innocua Clip11262 hypothetical protein NP_471369.1 2050585 R 272626 CDS NP_471370.1 16801102 1130746 complement(2051162..2052415) 1 NC_003212.1 hypothetical protein 2052415 1130746 lin2036 Listeria innocua Clip11262 hypothetical protein NP_471370.1 2051162 R 272626 CDS NP_471371.1 16801103 1130747 complement(2052546..2053832) 1 NC_003212.1 similar to 5-enolpyruvylshikimate-3-phosphate synthase; catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2053832 1130747 lin2037 Listeria innocua Clip11262 3-phosphoshikimate 1-carboxyvinyltransferase NP_471371.1 2052546 R 272626 CDS NP_471372.1 16801104 1130748 complement(2053846..2054949) 1 NC_003212.1 similar to prephenate dehydrogenase; catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 2054949 1130748 lin2038 Listeria innocua Clip11262 prephenate dehydrogenase NP_471372.1 2053846 R 272626 CDS NP_471373.1 16801105 1130749 complement(2054970..2056052) 1 NC_003212.1 similar to histidinol-phosphate aminotransferase and tyrosine/phenylalanine aminotransferase; catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2056052 1130749 lin2039 Listeria innocua Clip11262 histidinol-phosphate aminotransferase NP_471373.1 2054970 R 272626 CDS NP_471374.1 16801106 1130750 complement(2056052..2056426) 1 NC_003212.1 similar to chorismate mutase; hypothetical protein 2056426 1130750 lin2040 Listeria innocua Clip11262 hypothetical protein NP_471374.1 2056052 R 272626 CDS NP_471375.1 16801107 1130751 complement(2056423..2057520) 1 NC_003212.1 similar to 3-dehydroquinate synthase; catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2057520 aroB 1130751 aroB Listeria innocua Clip11262 3-dehydroquinate synthase NP_471375.1 2056423 R 272626 CDS NP_471376.1 16801108 1130752 complement(2057523..2058689) 1 NC_003212.1 similar to chorismate synthase; catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2058689 1130752 lin2042 Listeria innocua Clip11262 chorismate synthase NP_471376.1 2057523 R 272626 CDS NP_471377.1 16801109 1130754 complement(2058893..2059336) 1 NC_003212.1 similar to nucleoside diphosphate kinase; catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2059336 ndk 1130754 ndk Listeria innocua Clip11262 nucleoside diphosphate kinase NP_471377.1 2058893 R 272626 CDS NP_471378.1 16801110 1130755 complement(2059356..2060321) 1 NC_003212.1 similar to heptaprenyl diphosphate synthase component II (menaquinone biosynthesis); hypothetical protein 2060321 1130755 lin2044 Listeria innocua Clip11262 hypothetical protein NP_471378.1 2059356 R 272626 CDS NP_471379.1 16801111 1130756 complement(2060332..2061045) 1 NC_003212.1 similar to 2-heptaprenyl-1,4-naphthoquinone methyltransferase; Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 2061045 ubiE 1130756 ubiE Listeria innocua Clip11262 ubiquinone/menaquinone biosynthesis methyltransferase NP_471379.1 2060332 R 272626 CDS NP_471380.1 16801112 1130757 complement(2061068..2061835) 1 NC_003212.1 similar to heptaprenyl diphosphate synthase component I; hypothetical protein 2061835 1130757 lin2046 Listeria innocua Clip11262 hypothetical protein NP_471380.1 2061068 R 272626 CDS NP_471381.1 16801113 1130758 complement(2061894..2062463) 1 NC_003212.1 similar to GTP cyclohydrolase I; involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2062463 folE 1130758 folE Listeria innocua Clip11262 GTP cyclohydrolase I NP_471381.1 2061894 R 272626 CDS NP_471382.1 16801114 1130759 complement(2062689..2062964) 1 NC_003212.1 similar to non-specific DNA-binding protein HU; hypothetical protein 2062964 1130759 lin2048 Listeria innocua Clip11262 hypothetical protein NP_471382.1 2062689 R 272626 CDS NP_471383.1 16801115 1130760 complement(2063378..2064358) 1 NC_003212.1 similar to protein-tyrosine/serine phosphatase; hypothetical protein 2064358 1130760 lin2049 Listeria innocua Clip11262 hypothetical protein NP_471383.1 2063378 R 272626 CDS NP_471384.1 16801116 1130761 complement(2064461..2065477) 1 NC_003212.1 similar to NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2065477 gpsA 1130761 gpsA Listeria innocua Clip11262 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase NP_471384.1 2064461 R 272626 CDS NP_471385.1 16801117 1130762 complement(2065500..2066810) 1 NC_003212.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2066810 engA 1130762 engA Listeria innocua Clip11262 GTP-binding protein EngA NP_471385.1 2065500 R 272626 CDS NP_471386.1 16801118 1130763 complement(2066954..2068099) 1 NC_003212.1 similar to similar to ribosomal protein S1 like protein; in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2068099 rpsA 1130763 rpsA Listeria innocua Clip11262 30S ribosomal protein S1 NP_471386.1 2066954 R 272626 CDS NP_471387.1 16801119 1130764 complement(2068459..2069133) 1 NC_003212.1 similar to cytidylate kinase; Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2069133 cmk 1130764 cmk Listeria innocua Clip11262 cytidylate kinase NP_471387.1 2068459 R 272626 CDS NP_471388.1 16801120 1130765 complement(2069149..2070111) 1 NC_003212.1 similar to asparaginase; hypothetical protein 2070111 1130765 lin2054 Listeria innocua Clip11262 hypothetical protein NP_471388.1 2069149 R 272626 CDS NP_471389.1 16801121 1130766 complement(2070192..2070923) 1 NC_003212.1 hypothetical protein 2070923 1130766 lin2055 Listeria innocua Clip11262 hypothetical protein NP_471389.1 2070192 R 272626 CDS NP_471390.1 16801122 1130767 complement(2071244..2072647) 1 NC_003212.1 similar to ATP-dependent DNA helicase; hypothetical protein 2072647 1130767 lin2056 Listeria innocua Clip11262 hypothetical protein NP_471390.1 2071244 R 272626 CDS NP_471391.1 16801123 1130768 complement(2072644..2073651) 1 NC_003212.1 hypothetical protein 2073651 1130768 lin2057 Listeria innocua Clip11262 hypothetical protein NP_471391.1 2072644 R 272626 CDS NP_471392.1 16801124 1130770 2073807..2074031 1 NC_003212.1 similar to ferredoxin; hypothetical protein 2074031 1130770 lin2058 Listeria innocua Clip11262 hypothetical protein NP_471392.1 2073807 D 272626 CDS NP_471393.1 16801125 1130771 complement(2074073..2074684) 1 NC_003212.1 hypothetical protein 2074684 1130771 lin2059 Listeria innocua Clip11262 hypothetical protein NP_471393.1 2074073 R 272626 CDS NP_471394.1 16801126 1130772 complement(2075126..2075644) 1 NC_003212.1 similar to similar to acyl-CoA hydrolase; hypothetical protein 2075644 1130772 lin2060 Listeria innocua Clip11262 hypothetical protein NP_471394.1 2075126 R 272626 CDS NP_471395.1 16801127 1130773 complement(2075660..2077450) 1 NC_003212.1 similar to two-component sensor histidine kinase (ResE); hypothetical protein 2077450 1130773 lin2061 Listeria innocua Clip11262 hypothetical protein NP_471395.1 2075660 R 272626 CDS NP_471396.1 16801128 1130774 complement(2077548..2078264) 1 NC_003212.1 similar to two-component response regulator (ResD); hypothetical protein 2078264 1130774 lin2062 Listeria innocua Clip11262 hypothetical protein NP_471396.1 2077548 R 272626 CDS NP_471397.1 16801129 1130775 complement(2078449..2079183) 1 NC_003212.1 hypothetical protein 2079183 1130775 lin2063 Listeria innocua Clip11262 hypothetical protein NP_471397.1 2078449 R 272626 CDS NP_471398.1 16801130 1130776 complement(2079186..2079782) 1 NC_003212.1 hypothetical protein 2079782 1130776 lin2064 Listeria innocua Clip11262 hypothetical protein NP_471398.1 2079186 R 272626 CDS NP_471399.1 16801131 1130778 complement(2079779..2080528) 1 NC_003212.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 2080528 scpA 1130778 scpA Listeria innocua Clip11262 segregation and condensation protein A NP_471399.1 2079779 R 272626 CDS NP_471400.1 16801132 1130780 complement(2080544..2081854) 1 NC_003212.1 similar to diaminopimelate decarboxylase; hypothetical protein 2081854 1130780 lin2066 Listeria innocua Clip11262 hypothetical protein NP_471400.1 2080544 R 272626 CDS NP_471401.1 16801133 1130781 complement(2082034..2082852) 1 NC_003212.1 similar to purine-nucleoside phosphorylase; catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2082852 1130781 lin2067 Listeria innocua Clip11262 purine nucleoside phosphorylase NP_471401.1 2082034 R 272626 CDS NP_471402.1 16801134 1130782 complement(2082871..2084055) 1 NC_003212.1 similar to phosphopentomutase; catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 2084055 1130782 lin2068 Listeria innocua Clip11262 phosphopentomutase NP_471402.1 2082871 R 272626 CDS NP_471403.1 16801135 1130783 complement(2084084..2084977) 1 NC_003212.1 similar to integrase/recombinase; hypothetical protein 2084977 1130783 lin2069 Listeria innocua Clip11262 hypothetical protein NP_471403.1 2084084 R 272626 CDS NP_471404.1 16801136 1130784 complement(2085123..2085581) 1 NC_003212.1 similar to transcriptional regulator (Fur family); hypothetical protein 2085581 1130784 lin2070 Listeria innocua Clip11262 hypothetical protein NP_471404.1 2085123 R 272626 CDS NP_471405.1 16801137 1130785 complement(2085823..2086845) 1 NC_003212.1 similar to ferrichrome ABC transporter (permease); hypothetical protein 2086845 1130785 lin2071 Listeria innocua Clip11262 hypothetical protein NP_471405.1 2085823 R 272626 CDS NP_471406.1 16801138 1130786 complement(2086845..2087870) 1 NC_003212.1 similar to ferrichrome ABC transporter (permease); hypothetical protein 2087870 1130786 lin2072 Listeria innocua Clip11262 hypothetical protein NP_471406.1 2086845 R 272626 CDS NP_471407.1 16801139 1130788 complement(2087972..2088913) 1 NC_003212.1 similar to ferrichrome binding protein; hypothetical protein 2088913 1130788 lin2073 Listeria innocua Clip11262 hypothetical protein NP_471407.1 2087972 R 272626 CDS NP_471408.1 16801140 1130789 2089079..2089903 1 NC_003212.1 similar to ferrichrome ABC transporter (ATP-binding protein); hypothetical protein 2089903 1130789 lin2074 Listeria innocua Clip11262 hypothetical protein NP_471408.1 2089079 D 272626 CDS NP_471409.1 16801141 1130791 2089893..2090891 1 NC_003212.1 similar to oxidoreductases; hypothetical protein 2090891 1130791 lin2075 Listeria innocua Clip11262 hypothetical protein NP_471409.1 2089893 D 272626 CDS NP_471410.1 16801142 1130792 complement(2090906..2091526) 1 NC_003212.1 similar to transcription regulators (TetR family); hypothetical protein 2091526 1130792 lin2076 Listeria innocua Clip11262 hypothetical protein NP_471410.1 2090906 R 272626 CDS NP_471411.1 16801143 1130793 complement(2091526..2092341) 1 NC_003212.1 hypothetical protein 2092341 1130793 lin2077 Listeria innocua Clip11262 hypothetical protein NP_471411.1 2091526 R 272626 CDS NP_471412.1 16801144 1130795 complement(2092338..2093225) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 2093225 1130795 lin2078 Listeria innocua Clip11262 hypothetical protein NP_471412.1 2092338 R 272626 CDS NP_471413.1 16801145 1130797 complement(2093788..2094345) 1 NC_003212.1 hypothetical protein 2094345 1130797 lin2079 Listeria innocua Clip11262 hypothetical protein NP_471413.1 2093788 R 272626 CDS NP_471414.1 16801146 1130798 2094622..2095281 1 NC_003212.1 hypothetical protein 2095281 1130798 lin2080 Listeria innocua Clip11262 hypothetical protein NP_471414.1 2094622 D 272626 CDS NP_471415.1 16801147 1130800 2095259..2096458 1 NC_003212.1 similar to toxic ion resistance proteins; hypothetical protein 2096458 1130800 lin2081 Listeria innocua Clip11262 hypothetical protein NP_471415.1 2095259 D 272626 CDS NP_471416.1 16801148 1130801 complement(2096496..2097566) 1 NC_003212.1 similar to Escherichia coli DNA-damage-inducible protein dinP; involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2097566 1130801 lin2082 Listeria innocua Clip11262 DNA polymerase IV NP_471416.1 2096496 R 272626 CDS NP_471417.1 16801149 1130802 complement(2097675..2098466) 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 2098466 1130802 lin2083 Listeria innocua Clip11262 hypothetical protein NP_471417.1 2097675 R 272626 CDS NP_471418.1 16801150 1130803 complement(2098471..2099391) 1 NC_003212.1 hypothetical protein 2099391 1130803 lin2084 Listeria innocua Clip11262 hypothetical protein NP_471418.1 2098471 R 272626 CDS NP_471419.1 16801151 1130805 2099692..2101167 1 NC_003212.1 similar to glucose-6-phosphate 1-dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2101167 1130805 lin2085 Listeria innocua Clip11262 glucose-6-phosphate 1-dehydrogenase NP_471419.1 2099692 D 272626 CDS NP_471420.1 16801152 1130806 2101286..2101717 1 NC_003212.1 hypothetical protein 2101717 1130806 lin2086 Listeria innocua Clip11262 hypothetical protein NP_471420.1 2101286 D 272626 CDS NP_471421.1 16801153 1130807 2101751..2101888 1 NC_003212.1 lin2087; hypothetical protein 2101888 1130807 lin2087 Listeria innocua Clip11262 hypothetical protein NP_471421.1 2101751 D 272626 CDS NP_471422.1 16801154 1130808 complement(2101871..2102356) 1 NC_003212.1 hypothetical protein 2102356 1130808 lin2088 Listeria innocua Clip11262 hypothetical protein NP_471422.1 2101871 R 272626 CDS NP_471423.1 16801155 1130809 complement(2102329..2102856) 1 NC_003212.1 hypothetical protein 2102856 1130809 lin2089 Listeria innocua Clip11262 hypothetical protein NP_471423.1 2102329 R 272626 CDS NP_471424.1 16801156 1130810 2103546..2105240 1 NC_003212.1 similar to dihydroxy-acid dehydratase; catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2105240 1130810 lin2090 Listeria innocua Clip11262 dihydroxy-acid dehydratase NP_471424.1 2103546 D 272626 CDS NP_471425.1 16801157 1130811 2105259..2106980 1 NC_003212.1 similar to acetolactate synthase (acetohydroxy-acid synthase) (large subunit); hypothetical protein 2106980 1130811 lin2091 Listeria innocua Clip11262 hypothetical protein NP_471425.1 2105259 D 272626 CDS NP_471426.1 16801158 1130812 2106981..2107472 1 NC_003212.1 similar to acetolactate synthase (acetohydroxy-acid synthase) (small subunit); with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2107472 ilvH 1130812 ilvH Listeria innocua Clip11262 acetolactate synthase 3 regulatory subunit NP_471426.1 2106981 D 272626 CDS NP_471427.1 16801159 1130813 2107570..2108565 1 NC_003212.1 similar to ketol-acid reductoisomerase (acetohydroxy-acid isomeroreductase); catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2108565 1130813 lin2093 Listeria innocua Clip11262 ketol-acid reductoisomerase NP_471427.1 2107570 D 272626 CDS NP_471428.1 16801160 1130814 2108723..2110261 1 NC_003212.1 similar to 2-isopropylmalate synthase; catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2110261 1130814 lin2094 Listeria innocua Clip11262 2-isopropylmalate synthase NP_471428.1 2108723 D 272626 CDS NP_471429.1 16801161 1130816 2110263..2111315 1 NC_003212.1 similar to 3-isopropylmalate dehydrogenase; catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2111315 1130816 lin2095 Listeria innocua Clip11262 3-isopropylmalate dehydrogenase NP_471429.1 2110263 D 272626 CDS NP_471430.1 16801162 1130818 2111317..2112705 1 NC_003212.1 similar to 3-isopropylmalate dehydratase (large subunit); dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2112705 1130818 lin2096 Listeria innocua Clip11262 isopropylmalate isomerase large subunit NP_471430.1 2111317 D 272626 CDS NP_471431.1 16801163 1130820 2112692..2113273 1 NC_003212.1 similar to 3-isopropylmalate dehydratase (small subunit); catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2113273 leuD 1130820 leuD Listeria innocua Clip11262 isopropylmalate isomerase small subunit NP_471431.1 2112692 D 272626 CDS NP_471432.1 16801164 1130821 2113292..2114560 1 NC_003212.1 similar to threonine dehydratase; catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 2114560 1130821 lin2098 Listeria innocua Clip11262 threonine dehydratase NP_471432.1 2113292 D 272626 CDS NP_471433.1 16801165 1130822 2114752..2115471 1 NC_003212.1 similar to alpha-acetolactate decarboxylase; hypothetical protein 2115471 1130822 lin2099 Listeria innocua Clip11262 hypothetical protein NP_471433.1 2114752 D 272626 CDS NP_471434.1 16801166 1130823 complement(2115512..2117806) 1 NC_003212.1 similar to p60-related proteins; hypothetical protein 2117806 1130823 lin2100 Listeria innocua Clip11262 hypothetical protein NP_471434.1 2115512 R 272626 CDS NP_471435.1 16801167 1130824 complement(2117991..2119292) 1 NC_003212.1 similar to pyrimidine-nucleoside phosphorylase; Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase 2119292 1130824 lin2101 Listeria innocua Clip11262 pyrimidine-nucleoside phosphorylase NP_471435.1 2117991 R 272626 CDS NP_471436.1 16801168 1130825 complement(2119423..2120433) 1 NC_003212.1 similar to transcription regulators (LacI family); hypothetical protein 2120433 1130825 lin2102 Listeria innocua Clip11262 hypothetical protein NP_471436.1 2119423 R 272626 CDS NP_471437.1 16801169 1130826 complement(2120513..2121184) 1 NC_003212.1 similar to deoxyribose-phosphate aldolase; catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 2121184 1130826 lin2103 Listeria innocua Clip11262 deoxyribose-phosphate aldolase NP_471437.1 2120513 R 272626 CDS NP_471438.1 16801170 1130827 complement(2121247..2122194) 1 NC_003212.1 similar to transcription repressor of dra/nupC/pdp operon DeoR; hypothetical protein 2122194 1130827 lin2104 Listeria innocua Clip11262 hypothetical protein NP_471438.1 2121247 R 272626 CDS NP_471439.1 16801171 1130828 complement(2122292..2122708) 1 NC_003212.1 similar to PTS mannose-specific enzyme IIA component; hypothetical protein 2122708 1130828 lin2105 Listeria innocua Clip11262 hypothetical protein NP_471439.1 2122292 R 272626 CDS NP_471440.1 16801172 1130829 complement(2122725..2123720) 1 NC_003212.1 similar to opine catabolism protein; hypothetical protein 2123720 1130829 lin2106 Listeria innocua Clip11262 hypothetical protein NP_471440.1 2122725 R 272626 CDS NP_471441.1 16801173 1130830 complement(2123743..2124807) 1 NC_003212.1 weakly similar to glucosamine-fructose-6-phosphate aminotransferase; hypothetical protein 2124807 1130830 lin2107 Listeria innocua Clip11262 hypothetical protein NP_471441.1 2123743 R 272626 CDS NP_471442.1 16801174 1130831 complement(2124820..2125641) 1 NC_003212.1 similar to PTS mannose-specific enzyme IID component; hypothetical protein 2125641 1130831 lin2108 Listeria innocua Clip11262 hypothetical protein NP_471442.1 2124820 R 272626 CDS NP_471443.1 16801175 1130832 complement(2125622..2126440) 1 NC_003212.1 similar to PTS mannose-specific enzyme IIC component; hypothetical protein 2126440 1130832 lin2109 Listeria innocua Clip11262 hypothetical protein NP_471443.1 2125622 R 272626 CDS NP_471444.1 16801176 1130834 complement(2126463..2126930) 1 NC_003212.1 similar to PTS mannose-specific enzyme IIB component; hypothetical protein 2126930 1130834 lin2110 Listeria innocua Clip11262 hypothetical protein NP_471444.1 2126463 R 272626 CDS NP_471445.1 16801177 1130835 complement(2126950..2127651) 1 NC_003212.1 similar to transcription regulator GntR family; hypothetical protein 2127651 1130835 lin2111 Listeria innocua Clip11262 hypothetical protein NP_471445.1 2126950 R 272626 CDS NP_471446.1 16801178 1130836 complement(2127654..2128385) 1 NC_003212.1 similar to transcription regulator GntR family; hypothetical protein 2128385 1130836 lin2112 Listeria innocua Clip11262 hypothetical protein NP_471446.1 2127654 R 272626 CDS NP_471447.1 16801179 1130838 complement(2128554..2129549) 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 2129549 1130838 lin2113 Listeria innocua Clip11262 hypothetical protein NP_471447.1 2128554 R 272626 CDS NP_471448.1 16801180 1130839 complement(2129664..2131358) 1 NC_003212.1 similar to alpha-acetolactate synthase protein, AlsS; catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 2131358 1130839 lin2114 Listeria innocua Clip11262 acetolactate synthase NP_471448.1 2129664 R 272626 CDS NP_471449.1 16801181 1130840 complement(2131545..2133002) 1 NC_003212.1 weakly similar to putative sugar-binding lipoproteins; hypothetical protein 2133002 1130840 lin2115 Listeria innocua Clip11262 hypothetical protein NP_471449.1 2131545 R 272626 CDS NP_471450.1 16801182 1130841 complement(2133021..2133992) 1 NC_003212.1 similar to putative ABC transporter, permease protein; hypothetical protein 2133992 1130841 lin2116 Listeria innocua Clip11262 hypothetical protein NP_471450.1 2133021 R 272626 CDS NP_471451.1 16801183 1130842 complement(2134011..2134940) 1 NC_003212.1 similar to putative transport system integral membrane protein; hypothetical protein 2134940 1130842 lin2117 Listeria innocua Clip11262 hypothetical protein NP_471451.1 2134011 R 272626 CDS NP_471452.1 16801184 1130843 complement(2135053..2136537) 1 NC_003212.1 similar to two-component response regulator; hypothetical protein 2136537 1130843 lin2118 Listeria innocua Clip11262 hypothetical protein NP_471452.1 2135053 R 272626 CDS NP_471453.1 16801185 1130844 complement(2136537..2138270) 1 NC_003212.1 similar to two-component sensor histidine kinase; hypothetical protein 2138270 1130844 lin2119 Listeria innocua Clip11262 hypothetical protein NP_471453.1 2136537 R 272626 CDS NP_471454.1 16801186 1130846 complement(2138333..2138944) 1 NC_003212.1 hypothetical protein 2138944 1130846 lin2120 Listeria innocua Clip11262 hypothetical protein NP_471454.1 2138333 R 272626 CDS NP_471455.1 16801187 1130847 complement(2139004..2140308) 1 NC_003212.1 hypothetical protein 2140308 1130847 lin2121 Listeria innocua Clip11262 hypothetical protein NP_471455.1 2139004 R 272626 CDS NP_471456.1 16801188 1130848 complement(2140312..2142960) 1 NC_003212.1 similar to putative sugar hydrolases; hypothetical protein 2142960 1130848 lin2122 Listeria innocua Clip11262 hypothetical protein NP_471456.1 2140312 R 272626 CDS NP_471457.1 16801189 1130850 2143225..2146323 1 NC_003212.1 similar to alpha-mannosidase; hypothetical protein 2146323 1130850 lin2123 Listeria innocua Clip11262 hypothetical protein NP_471457.1 2143225 D 272626 CDS NP_471458.1 16801190 1130851 complement(2146391..2146591) 1 NC_003212.1 similar to major cold-shock protein; hypothetical protein 2146591 1130851 lin2124 Listeria innocua Clip11262 hypothetical protein NP_471458.1 2146391 R 272626 CDS NP_471459.1 16801191 1130852 complement(2146878..2147573) 1 NC_003212.1 hypothetical protein 2147573 1130852 lin2125 Listeria innocua Clip11262 hypothetical protein NP_471459.1 2146878 R 272626 CDS NP_471460.1 16801192 1130853 complement(2147587..2148576) 1 NC_003212.1 similar to diaminopimelate epimerase; involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2148576 dapF 1130853 dapF Listeria innocua Clip11262 diaminopimelate epimerase NP_471460.1 2147587 R 272626 CDS NP_471461.1 16801193 1130854 complement(2148688..2151453) 1 NC_003212.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 2151453 ileS 1130854 ileS Listeria innocua Clip11262 isoleucyl-tRNA synthetase NP_471461.1 2148688 R 272626 CDS NP_471462.1 16801194 1130855 complement(2151736..2152263) 1 NC_003212.1 similar to cell-division initiation protein (septum placement); hypothetical protein 2152263 1130855 lin2128 Listeria innocua Clip11262 hypothetical protein NP_471462.1 2151736 R 272626 CDS NP_471463.1 16801195 1130856 complement(2152358..2152879) 1 NC_003212.1 hypothetical protein 2152879 1130856 lin2129 Listeria innocua Clip11262 hypothetical protein NP_471463.1 2152358 R 272626 CDS NP_471464.1 16801196 1130857 complement(2152884..2153990) 1 NC_003212.1 similar to a NifS-like protein required for NAD biosynthesis; hypothetical protein 2153990 1130857 lin2130 Listeria innocua Clip11262 hypothetical protein NP_471464.1 2152884 R 272626 CDS NP_471465.1 16801197 1130858 2154122..2155576 1 NC_003212.1 similar to L-aspartate oxidase; catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2155576 1130858 lin2131 Listeria innocua Clip11262 L-aspartate oxidase NP_471465.1 2154122 D 272626 CDS NP_471466.1 16801198 1130859 2155573..2156418 1 NC_003212.1 similar to nicotinate-nucleotide pyrophosphorylase; catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 2156418 1130859 lin2132 Listeria innocua Clip11262 nicotinate-nucleotide pyrophosphorylase NP_471466.1 2155573 D 272626 CDS NP_471467.1 16801199 1130860 2156415..2157515 1 NC_003212.1 similar to quinolinate synthetase; 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2157515 1130860 lin2133 Listeria innocua Clip11262 quinolinate synthetase NP_471467.1 2156415 D 272626 CDS NP_471468.1 16801200 1130861 complement(2158281..2159057) 1 NC_003212.1 hypothetical protein 2159057 1130861 lin2134 Listeria innocua Clip11262 hypothetical protein NP_471468.1 2158281 R 272626 CDS NP_471469.1 16801201 1130862 complement(2159184..2159474) 1 NC_003212.1 hypothetical protein 2159474 1130862 lin2135 Listeria innocua Clip11262 hypothetical protein NP_471469.1 2159184 R 272626 CDS NP_471470.1 16801202 1130863 complement(2159497..2159955) 1 NC_003212.1 hypothetical protein 2159955 1130863 lin2136 Listeria innocua Clip11262 hypothetical protein NP_471470.1 2159497 R 272626 CDS NP_471471.1 16801203 1130864 complement(2159959..2160648) 1 NC_003212.1 hypothetical protein 2160648 1130864 lin2137 Listeria innocua Clip11262 hypothetical protein NP_471471.1 2159959 R 272626 CDS NP_471472.1 16801204 1130866 complement(2160769..2161947) 1 NC_003212.1 highly similar to cell-division initiation protein FtsZ; GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2161947 1130866 lin2138 Listeria innocua Clip11262 cell division protein FtsZ NP_471472.1 2160769 R 272626 CDS NP_471473.1 16801205 1130867 complement(2162014..2163288) 1 NC_003212.1 highly similar to cell-division protein FtsA; hypothetical protein 2163288 1130867 lin2139 Listeria innocua Clip11262 hypothetical protein NP_471473.1 2162014 R 272626 CDS NP_471474.1 16801206 1130868 complement(2163653..2164465) 1 NC_003212.1 similar to cell-division initiation protein divIB; hypothetical protein 2164465 1130868 lin2140 Listeria innocua Clip11262 hypothetical protein NP_471474.1 2163653 R 272626 CDS NP_471475.1 16801207 1130869 complement(2164488..2165579) 1 NC_003212.1 similar to peptidoglycan synthesis enzymes, putative phospho-N-acetylmuramoyl-pentapeptide-transferase; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 2165579 murG 1130869 murG Listeria innocua Clip11262 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase NP_471475.1 2164488 R 272626 CDS NP_471476.1 16801208 1130870 complement(2165576..2166943) 1 NC_003212.1 similar to UDP-N-acetylmuramoylalanine D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 2166943 murD 1130870 murD Listeria innocua Clip11262 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase NP_471476.1 2165576 R 272626 CDS NP_471477.1 16801209 1130871 complement(2167082..2168056) 1 NC_003212.1 similar to phospho-N-acetylmuramoyl-pentapeptide transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2168056 mraY 1130871 mraY Listeria innocua Clip11262 phospho-N-acetylmuramoyl-pentapeptide- transferase NP_471477.1 2167082 R 272626 CDS NP_471478.1 16801210 1130872 complement(2168103..2169578) 1 NC_003212.1 similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2169578 murE 1130872 murE Listeria innocua Clip11262 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase NP_471478.1 2168103 R 272626 CDS NP_471479.1 16801211 1130873 complement(2169750..2172008) 1 NC_003212.1 similar to penicillin-binding protein 2B; hypothetical protein 2172008 1130873 lin2145 Listeria innocua Clip11262 hypothetical protein NP_471479.1 2169750 R 272626 CDS NP_471480.1 16801212 1130874 complement(2172005..2172367) 1 NC_003212.1 similar to cell-division protein FtsL; hypothetical protein 2172367 1130874 lin2146 Listeria innocua Clip11262 hypothetical protein NP_471480.1 2172005 R 272626 CDS NP_471481.1 16801213 1130876 complement(2172384..2173322) 1 NC_003212.1 S-adenosyl-methyltransferase MraW 2173322 mraW 1130876 mraW Listeria innocua Clip11262 S-adenosyl-methyltransferase MraW NP_471481.1 2172384 R 272626 CDS NP_471482.1 16801214 1130877 complement(2173335..2173766) 1 NC_003212.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 2173766 1130877 lin2148 Listeria innocua Clip11262 cell division protein MraZ NP_471482.1 2173335 R 272626 CDS NP_471483.1 16801215 1130878 complement(2173970..2175217) 1 NC_003212.1 similar to integral membrane proteins; hypothetical protein 2175217 1130878 lin2149 Listeria innocua Clip11262 hypothetical protein NP_471483.1 2173970 R 272626 CDS NP_471484.1 16801216 1130879 2175332..2177104 1 NC_003212.1 similar to transporter binding proteins; hypothetical protein 2177104 1130879 lin2150 Listeria innocua Clip11262 hypothetical protein NP_471484.1 2175332 D 272626 CDS NP_471485.1 16801217 1130880 complement(2177076..2177462) 1 NC_003212.1 lin2151; hypothetical protein 2177462 1130880 lin2151 Listeria innocua Clip11262 hypothetical protein NP_471485.1 2177076 R 272626 CDS NP_471486.1 16801218 1130881 complement(2177455..2178360) 1 NC_003212.1 weakly similar to ketopantoate reductase involved in thiamin biosynthesis; ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 2178360 1130881 lin2152 Listeria innocua Clip11262 2-dehydropantoate 2-reductase NP_471486.1 2177455 R 272626 CDS NP_471487.1 16801219 1130883 complement(2178511..2178684) 1 NC_003212.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2178684 rpmF 1130883 rpmF Listeria innocua Clip11262 50S ribosomal protein L32 NP_471487.1 2178511 R 272626 CDS NP_471488.1 16801220 1130884 complement(2178776..2179312) 1 NC_003212.1 hypothetical protein 2179312 1130884 lin2154 Listeria innocua Clip11262 hypothetical protein NP_471488.1 2178776 R 272626 CDS NP_471489.1 16801221 1130885 2179442..2180617 1 NC_003212.1 hypothetical protein 2180617 1130885 lin2155 Listeria innocua Clip11262 hypothetical protein NP_471489.1 2179442 D 272626 CDS NP_471490.1 16801222 1130886 2180700..2182940 1 NC_003212.1 similar to excinuclease ABC (subunit A); hypothetical protein 2182940 1130886 lin2156 Listeria innocua Clip11262 hypothetical protein NP_471490.1 2180700 D 272626 CDS NP_471491.1 16801223 1130887 complement(2182986..2184026) 1 NC_003212.1 weakly similar to proteases; hypothetical protein 2184026 1130887 lin2157 Listeria innocua Clip11262 hypothetical protein NP_471491.1 2182986 R 272626 CDS NP_471492.1 16801224 1130888 complement(2184041..2184526) 1 NC_003212.1 similar to phosphopantetheine adenylyltransferase; Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2184526 coaD 1130888 coaD Listeria innocua Clip11262 phosphopantetheine adenylyltransferase NP_471492.1 2184041 R 272626 CDS NP_471493.1 16801225 1130889 complement(2184529..2185086) 1 NC_003212.1 hypothetical protein 2185086 1130889 lin2159 Listeria innocua Clip11262 hypothetical protein NP_471493.1 2184529 R 272626 CDS NP_471494.1 16801226 1130891 complement(2185183..2185464) 1 NC_003212.1 hypothetical protein 2185464 1130891 lin2160 Listeria innocua Clip11262 hypothetical protein NP_471494.1 2185183 R 272626 CDS NP_471495.1 16801227 1130892 complement(2185495..2185944) 1 NC_003212.1 hypothetical protein 2185944 1130892 lin2161 Listeria innocua Clip11262 hypothetical protein NP_471495.1 2185495 R 272626 CDS NP_471496.1 16801228 1130893 complement(2185992..2187047) 1 NC_003212.1 hypothetical protein 2187047 1130893 lin2162 Listeria innocua Clip11262 hypothetical protein NP_471496.1 2185992 R 272626 CDS NP_471497.1 16801229 1130894 complement(2187195..2188100) 1 NC_003212.1 highly similar to heme A farnesyltransferase; converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 2188100 1130894 lin2163 Listeria innocua Clip11262 protoheme IX farnesyltransferase NP_471497.1 2187195 R 272626 CDS NP_471498.1 16801230 1130895 2188336..2189253 1 NC_003212.1 similar to heme O oxygenase; hypothetical protein 2189253 1130895 lin2164 Listeria innocua Clip11262 hypothetical protein NP_471498.1 2188336 D 272626 CDS NP_471499.1 16801231 1130896 2189363..2190106 1 NC_003212.1 similar to potassium channel subunit; hypothetical protein 2190106 1130896 lin2165 Listeria innocua Clip11262 hypothetical protein NP_471499.1 2189363 D 272626 CDS NP_471500.1 16801232 1130897 complement(2190112..2190753) 1 NC_003212.1 hypothetical protein 2190753 1130897 lin2166 Listeria innocua Clip11262 hypothetical protein NP_471500.1 2190112 R 272626 CDS NP_471501.1 16801233 1130898 complement(2190772..2191389) 1 NC_003212.1 hypothetical protein 2191389 1130898 lin2167 Listeria innocua Clip11262 hypothetical protein NP_471501.1 2190772 R 272626 CDS NP_471502.1 16801234 1130899 complement(2191402..2193027) 1 NC_003212.1 similar to copper export proteins; hypothetical protein 2193027 1130899 lin2168 Listeria innocua Clip11262 hypothetical protein NP_471502.1 2191402 R 272626 CDS NP_471503.1 16801235 1130900 2193174..2193365 1 NC_003212.1 lin2169; hypothetical protein 2193365 1130900 lin2169 Listeria innocua Clip11262 hypothetical protein NP_471503.1 2193174 D 272626 CDS NP_471504.1 16801236 1130901 2193426..2193812 1 NC_003212.1 similar to large conductance mechanosensitive channel protein; homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 2193812 mscL 1130901 mscL Listeria innocua Clip11262 large-conductance mechanosensitive channel NP_471504.1 2193426 D 272626 CDS NP_471505.1 16801237 1130902 complement(2193869..2194261) 1 NC_003212.1 lin2171; hypothetical protein 2194261 1130902 lin2171 Listeria innocua Clip11262 hypothetical protein NP_471505.1 2193869 R 272626 CDS NP_471506.1 16801238 1130903 complement(2194306..2194515) 1 NC_003212.1 lin2173; hypothetical protein 2194515 1130903 lin2173 Listeria innocua Clip11262 hypothetical protein NP_471506.1 2194306 R 272626 CDS NP_471507.1 16801239 1130904 complement(2194710..2196338) 1 NC_003212.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2196338 groEL 1130904 groEL Listeria innocua Clip11262 chaperonin GroEL NP_471507.1 2194710 R 272626 CDS NP_471508.1 16801240 1130905 complement(2196371..2196655) 1 NC_003212.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2196655 groES 1130905 groES Listeria innocua Clip11262 co-chaperonin GroES NP_471508.1 2196371 R 272626 CDS NP_471509.1 16801241 1130906 2196888..2197574 1 NC_003212.1 hypothetical protein 2197574 1130906 lin2176 Listeria innocua Clip11262 hypothetical protein NP_471509.1 2196888 D 272626 CDS NP_471510.1 16801242 1130908 2197576..2197773 1 NC_003212.1 lin2177; hypothetical protein 2197773 1130908 lin2177 Listeria innocua Clip11262 hypothetical protein NP_471510.1 2197576 D 272626 CDS NP_471511.1 16801243 1130909 complement(2197807..2198454) 1 NC_003212.1 similar to a putative DNA binding proteins; modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 2198454 1130909 lin2178 Listeria innocua Clip11262 redox-sensing transcriptional repressor Rex NP_471511.1 2197807 R 272626 CDS NP_471512.1 16801244 1130910 2198765..2200717 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2200717 1130910 lin2179 Listeria innocua Clip11262 hypothetical protein NP_471512.1 2198765 D 272626 CDS NP_471513.1 16801245 1130911 2200742..2201701 1 NC_003212.1 hypothetical protein 2201701 1130911 lin2180 Listeria innocua Clip11262 hypothetical protein NP_471513.1 2200742 D 272626 CDS NP_471514.2 161723260 1130912 complement(2201778..2202800) 1 NC_003212.1 similar to glycoprotein endopeptidase; in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 2202800 1130912 lin2181 Listeria innocua Clip11262 putative DNA-binding/iron metalloprotein/AP endonuclease NP_471514.2 2201778 R 272626 CDS NP_471515.1 16801247 1130913 complement(2202797..2203252) 1 NC_003212.1 similar to ribosomal protein alanine acetyltransferase; hypothetical protein 2203252 1130913 lin2182 Listeria innocua Clip11262 hypothetical protein NP_471515.1 2202797 R 272626 CDS NP_471516.1 16801248 1130915 complement(2203249..2203941) 1 NC_003212.1 similar to glycoprotease; hypothetical protein 2203941 1130915 lin2183 Listeria innocua Clip11262 hypothetical protein NP_471516.1 2203249 R 272626 CDS NP_471517.1 16801249 1130917 complement(2203938..2204399) 1 NC_003212.1 hypothetical protein 2204399 1130917 lin2184 Listeria innocua Clip11262 hypothetical protein NP_471517.1 2203938 R 272626 CDS NP_471518.1 16801250 1130918 complement(2204505..2205638) 1 NC_003212.1 lin2185; hypothetical protein 2205638 1130918 lin2185 Listeria innocua Clip11262 hypothetical protein NP_471518.1 2204505 R 272626 CDS NP_471519.1 16801251 1130919 complement(2205787..2206167) 1 NC_003212.1 lin2186; hypothetical protein 2206167 1130919 lin2186 Listeria innocua Clip11262 hypothetical protein NP_471519.1 2205787 R 272626 CDS NP_471520.1 16801252 1130920 complement(2206263..2206619) 1 NC_003212.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2206619 1130920 lin2187 Listeria innocua Clip11262 camphor resistance protein CrcB NP_471520.1 2206263 R 272626 CDS NP_471521.1 16801253 1130921 complement(2206609..2206998) 1 NC_003212.1 similar to unknown proetin; may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2206998 1130921 lin2188 Listeria innocua Clip11262 camphor resistance protein CrcB NP_471521.1 2206609 R 272626 CDS NP_471522.1 16801254 1130923 complement(2207105..2207731) 1 NC_003212.1 lin2189; hypothetical protein 2207731 1130923 lin2189 Listeria innocua Clip11262 hypothetical protein NP_471522.1 2207105 R 272626 CDS NP_471523.1 16801255 1130924 complement(2207728..2208621) 1 NC_003212.1 lin2190; hypothetical protein 2208621 1130924 lin2190 Listeria innocua Clip11262 hypothetical protein NP_471523.1 2207728 R 272626 CDS NP_471524.1 16801256 1130926 complement(2208964..2210244) 1 NC_003212.1 weakly similar to transcription regulators; hypothetical protein 2210244 1130926 lin2191 Listeria innocua Clip11262 hypothetical protein NP_471524.1 2208964 R 272626 CDS NP_471525.1 16801257 1130927 complement(2210837..2212168) 1 NC_003212.1 hypothetical protein 2212168 1130927 lin2192 Listeria innocua Clip11262 hypothetical protein NP_471525.1 2210837 R 272626 CDS NP_471526.1 16801258 1130928 complement(2212183..2212767) 1 NC_003212.1 similar to transcription regulators; hypothetical protein 2212767 1130928 lin2193 Listeria innocua Clip11262 hypothetical protein NP_471526.1 2212183 R 272626 CDS NP_471527.1 16801259 1130929 complement(2212877..2213920) 1 NC_003212.1 similar to lipases; hypothetical protein 2213920 1130929 lin2194 Listeria innocua Clip11262 hypothetical protein NP_471527.1 2212877 R 272626 CDS NP_471528.1 16801260 1130930 2214135..2215349 1 NC_003212.1 similar to argininosuccinate synthase; catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 2215349 1130930 lin2195 Listeria innocua Clip11262 argininosuccinate synthase NP_471528.1 2214135 D 272626 CDS NP_471529.1 16801261 1130931 2215353..2216723 1 NC_003212.1 similar to argininosuccinate lyase; catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2216723 1130931 lin2196 Listeria innocua Clip11262 argininosuccinate lyase NP_471529.1 2215353 D 272626 CDS NP_471530.1 16801262 1130932 2216882..2218405 1 NC_003212.1 glycine betaine transporter BetL 2218405 betL 1130932 betL Listeria innocua Clip11262 glycine betaine transporter BetL NP_471530.1 2216882 D 272626 CDS NP_471531.1 16801263 1130933 complement(2218650..2219300) 1 NC_003212.1 similar to L-fuculose-phosphate aldolase; hypothetical protein 2219300 1130933 lin2198 Listeria innocua Clip11262 hypothetical protein NP_471531.1 2218650 R 272626 CDS NP_471532.1 16801264 1130934 complement(2219302..2220234) 1 NC_003212.1 similar to 1-phosphofructokinase; hypothetical protein 2220234 1130934 lin2199 Listeria innocua Clip11262 hypothetical protein NP_471532.1 2219302 R 272626 CDS NP_471533.1 16801265 1130936 complement(2220252..2221601) 1 NC_003212.1 similar to PTS system galactitol-specific enzyme IIC component; hypothetical protein 2221601 1130936 lin2200 Listeria innocua Clip11262 hypothetical protein NP_471533.1 2220252 R 272626 CDS NP_471534.1 16801266 1130937 complement(2221629..2221904) 1 NC_003212.1 similar to PTS system galactitol-specific enzyme IIB component; hypothetical protein 2221904 1130937 lin2201 Listeria innocua Clip11262 hypothetical protein NP_471534.1 2221629 R 272626 CDS NP_471535.1 16801267 1130938 complement(2221910..2222377) 1 NC_003212.1 similar to PTS system galactitol-specific enzyme IIA component; hypothetical protein 2222377 1130938 lin2202 Listeria innocua Clip11262 hypothetical protein NP_471535.1 2221910 R 272626 CDS NP_471536.1 16801268 1130940 complement(2222385..2224391) 1 NC_003212.1 similar to transcription antiterminator; hypothetical protein 2224391 1130940 lin2203 Listeria innocua Clip11262 hypothetical protein NP_471536.1 2222385 R 272626 CDS NP_471537.1 16801269 1130942 complement(2224614..2226014) 1 NC_003212.1 similar to transcriptional regulator (GntR family) and to aminotransferase (MocR-like); hypothetical protein 2226014 1130942 lin2204 Listeria innocua Clip11262 hypothetical protein NP_471537.1 2224614 R 272626 CDS NP_471538.1 16801270 1130943 2226138..2227025 1 NC_003212.1 similar to a protein required for pyridoxine synthesis; with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 2227025 1130943 lin2205 Listeria innocua Clip11262 pyridoxal biosynthesis lyase PdxS NP_471538.1 2226138 D 272626 CDS NP_471539.1 16801271 1130945 2227027..2227593 1 NC_003212.1 lin2206; with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 2227593 1130945 lin2206 Listeria innocua Clip11262 glutamine amidotransferase subunit PdxT NP_471539.1 2227027 D 272626 CDS NP_471540.1 16801272 1130946 complement(2227632..2228609) 1 NC_003212.1 similar to phosphotransacetylase; in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2228609 eutD 1130946 eutD Listeria innocua Clip11262 phosphotransacetylase NP_471540.1 2227632 R 272626 CDS NP_471541.1 16801273 1130947 2228929..2229156 1 NC_003212.1 lin2208; hypothetical protein 2229156 1130947 lin2208 Listeria innocua Clip11262 hypothetical protein NP_471541.1 2228929 D 272626 CDS NP_471542.1 16801274 1130948 2229153..2231147 1 NC_003212.1 similar to ferrous iron transport protein B; hypothetical protein 2231147 1130948 lin2209 Listeria innocua Clip11262 hypothetical protein NP_471542.1 2229153 D 272626 CDS NP_471543.1 16801275 1130949 2231163..2231336 1 NC_003212.1 lin2210; hypothetical protein 2231336 1130949 lin2210 Listeria innocua Clip11262 hypothetical protein NP_471543.1 2231163 D 272626 CDS NP_471544.1 16801276 1130950 complement(2231367..2232221) 1 NC_003212.1 hypothetical protein 2232221 1130950 lin2211 Listeria innocua Clip11262 hypothetical protein NP_471544.1 2231367 R 272626 CDS NP_471545.1 16801277 1130951 2232441..2233202 1 NC_003212.1 similar to transcriptional regulator (DeoR family); hypothetical protein 2233202 1130951 lin2212 Listeria innocua Clip11262 hypothetical protein NP_471545.1 2232441 D 272626 CDS NP_471546.1 16801278 1130953 2233208..2234350 1 NC_003212.1 similar to N-acetylglucosamine-6-phosphate deacetylase; hypothetical protein 2234350 1130953 lin2213 Listeria innocua Clip11262 hypothetical protein NP_471546.1 2233208 D 272626 CDS NP_471547.1 16801279 1130954 2234392..2235189 1 NC_003212.1 similar to hydrolase; hypothetical protein 2235189 1130954 lin2214 Listeria innocua Clip11262 hypothetical protein NP_471547.1 2234392 D 272626 CDS NP_471548.1 16801280 1130955 complement(2235261..2236217) 1 NC_003212.1 similar to mannnose-6 phospate isomerase; hypothetical protein 2236217 1130955 lin2215 Listeria innocua Clip11262 hypothetical protein NP_471548.1 2235261 R 272626 CDS NP_471549.1 16801281 1130956 complement(2236297..2237028) 1 NC_003212.1 similar to FMN-containing NADPH-linked nitro/flavin reductase; hypothetical protein 2237028 1130956 lin2216 Listeria innocua Clip11262 hypothetical protein NP_471549.1 2236297 R 272626 CDS NP_471550.1 16801282 1130957 2237151..2237381 1 NC_003212.1 lin2217; hypothetical protein 2237381 1130957 lin2217 Listeria innocua Clip11262 hypothetical protein NP_471550.1 2237151 D 272626 CDS NP_471551.1 16801283 1130958 2237464..2238219 1 NC_003212.1 putative heme peroxidase 2238219 1130958 lin2218 Listeria innocua Clip11262 putative heme peroxidase NP_471551.1 2237464 D 272626 CDS NP_471552.1 16801284 1130959 2238419..2239186 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2239186 1130959 lin2219 Listeria innocua Clip11262 hypothetical protein NP_471552.1 2238419 D 272626 CDS NP_471553.1 16801285 1130961 2239173..2241113 1 NC_003212.1 similar to ABC transporter (permease); hypothetical protein 2241113 1130961 lin2220 Listeria innocua Clip11262 hypothetical protein NP_471553.1 2239173 D 272626 CDS NP_471554.1 16801286 1130962 complement(2241131..2241964) 1 NC_003212.1 lin2221; hypothetical protein 2241964 1130962 lin2221 Listeria innocua Clip11262 hypothetical protein NP_471554.1 2241131 R 272626 CDS NP_471555.1 16801287 1130963 2242026..2242487 1 NC_003212.1 hypothetical protein 2242487 1130963 lin2222 Listeria innocua Clip11262 hypothetical protein NP_471555.1 2242026 D 272626 CDS NP_471556.1 16801288 1130964 complement(2242524..2243876) 1 NC_003212.1 similar to phosphoglucomutase; catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2243876 glmM 1130964 glmM Listeria innocua Clip11262 phosphoglucosamine mutase NP_471556.1 2242524 R 272626 CDS NP_471557.1 16801289 1130965 complement(2244133..2245491) 1 NC_003212.1 hypothetical protein 2245491 1130965 lin2224 Listeria innocua Clip11262 hypothetical protein NP_471557.1 2244133 R 272626 CDS NP_471558.1 16801290 1130966 complement(2245491..2246312) 1 NC_003212.1 hypothetical protein 2246312 1130966 lin2225 Listeria innocua Clip11262 hypothetical protein NP_471558.1 2245491 R 272626 CDS NP_471559.1 16801291 1130968 complement(2246487..2248748) 1 NC_003212.1 similar to maltosephosphorylase; maltose phosphorylase 2248748 1130968 lin2226 Listeria innocua Clip11262 maltose phosphorylase NP_471559.1 2246487 R 272626 CDS NP_471560.1 16801292 1130969 complement(2248764..2249597) 1 NC_003212.1 similar to maltodextrose utilization protein MalA; hypothetical protein 2249597 1130969 lin2227 Listeria innocua Clip11262 hypothetical protein NP_471560.1 2248764 R 272626 CDS NP_471561.1 16801293 1130970 complement(2249625..2250476) 1 NC_003212.1 similar to maltodextrin ABC-transport system (permease); hypothetical protein 2250476 1130970 lin2228 Listeria innocua Clip11262 hypothetical protein NP_471561.1 2249625 R 272626 CDS NP_471562.1 16801294 1130971 complement(2250477..2251784) 1 NC_003212.1 similar to maltodextrin ABC-transport system (permease); hypothetical protein 2251784 1130971 lin2229 Listeria innocua Clip11262 hypothetical protein NP_471562.1 2250477 R 272626 CDS NP_471563.1 16801295 1130973 complement(2251872..2253131) 1 NC_003212.1 similar to maltose/maltodextrin ABC-transporter (binding protein); hypothetical protein 2253131 1130973 lin2230 Listeria innocua Clip11262 hypothetical protein NP_471563.1 2251872 R 272626 CDS NP_471564.1 16801296 1130974 complement(2253346..2255121) 1 NC_003212.1 similar to maltogenic amylase; hypothetical protein 2255121 1130974 lin2231 Listeria innocua Clip11262 hypothetical protein NP_471564.1 2253346 R 272626 CDS NP_471565.1 16801297 1130975 2255366..2256001 1 NC_003212.1 lin2232; hypothetical protein 2256001 1130975 lin2232 Listeria innocua Clip11262 hypothetical protein NP_471565.1 2255366 D 272626 CDS NP_471566.1 16801298 1130976 complement(2256038..2257003) 1 NC_003212.1 similar to transcription regulator, LacI family; hypothetical protein 2257003 1130976 lin2233 Listeria innocua Clip11262 hypothetical protein NP_471566.1 2256038 R 272626 CDS NP_471567.1 16801299 1130978 complement(2257142..2257378) 1 NC_003212.1 lin2234; hypothetical protein 2257378 1130978 lin2234 Listeria innocua Clip11262 hypothetical protein NP_471567.1 2257142 R 272626 CDS NP_471568.1 16801300 1130979 complement(2257975..2259798) 1 NC_003212.1 hypothetical protein 2259798 1130979 lin2235 Listeria innocua Clip11262 hypothetical protein NP_471568.1 2257975 R 272626 CDS NP_471569.1 16801301 1130980 complement(2260785..2261486) 1 NC_003212.1 lin2236; hypothetical protein 2261486 1130980 lin2236 Listeria innocua Clip11262 hypothetical protein NP_471569.1 2260785 R 272626 CDS NP_471570.1 16801302 1130981 2261976..2262677 1 NC_003212.1 lin2237; hypothetical protein 2262677 1130981 lin2237 Listeria innocua Clip11262 hypothetical protein NP_471570.1 2261976 D 272626 CDS NP_471571.1 16801303 1130982 complement(2262719..2263618) 1 NC_003212.1 similar to fructose-1,6-biphosphate aldolase type II; hypothetical protein 2263618 1130982 lin2238 Listeria innocua Clip11262 hypothetical protein NP_471571.1 2262719 R 272626 CDS NP_471572.1 16801304 1130983 complement(2263635..2264489) 1 NC_003212.1 similar to fructose-1,6-biphosphate aldolase type II; hypothetical protein 2264489 1130983 lin2239 Listeria innocua Clip11262 hypothetical protein NP_471572.1 2263635 R 272626 CDS NP_471573.1 16801305 1130984 complement(2264507..2265598) 1 NC_003212.1 similar to PTS system, fructose-specific enzyme IIC component; hypothetical protein 2265598 1130984 lin2240 Listeria innocua Clip11262 hypothetical protein NP_471573.1 2264507 R 272626 CDS NP_471574.1 16801306 1130985 complement(2265615..2265926) 1 NC_003212.1 similar to PTS system, fructose-specific enzyme IIB component; hypothetical protein 2265926 1130985 lin2241 Listeria innocua Clip11262 hypothetical protein NP_471574.1 2265615 R 272626 CDS NP_471575.1 16801307 1130986 complement(2265939..2266412) 1 NC_003212.1 similar to PTS system, fructose-specific enzyme IIA component; hypothetical protein 2266412 1130986 lin2242 Listeria innocua Clip11262 hypothetical protein NP_471575.1 2265939 R 272626 CDS NP_471576.1 16801308 1130987 complement(2266424..2267881) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 2267881 1130987 lin2243 Listeria innocua Clip11262 hypothetical protein NP_471576.1 2266424 R 272626 CDS NP_471577.1 16801309 1130988 2268076..2268978 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2268978 1130988 lin2244 Listeria innocua Clip11262 hypothetical protein NP_471577.1 2268076 D 272626 CDS NP_471578.1 16801310 1130989 2268971..2270206 1 NC_003212.1 similar to ABC transporter (membrane protein); hypothetical protein 2270206 1130989 lin2245 Listeria innocua Clip11262 hypothetical protein NP_471578.1 2268971 D 272626 CDS NP_471579.1 16801311 1130990 2270223..2270696 1 NC_003212.1 hypothetical protein 2270696 1130990 lin2246 Listeria innocua Clip11262 hypothetical protein NP_471579.1 2270223 D 272626 CDS NP_471580.1 16801312 1130991 complement(2271304..2271951) 1 NC_003212.1 lin2248; hypothetical protein 2271951 1130991 lin2248 Listeria innocua Clip11262 hypothetical protein NP_471580.1 2271304 R 272626 CDS NP_471581.1 16801313 1130992 complement(2272173..2273189) 1 NC_003212.1 hypothetical protein 2273189 1130992 lin2249 Listeria innocua Clip11262 hypothetical protein NP_471581.1 2272173 R 272626 CDS NP_471582.1 16801314 1130993 complement(2273258..2274112) 1 NC_003212.1 similar to transcription regulator LysR family; hypothetical protein 2274112 1130993 lin2250 Listeria innocua Clip11262 hypothetical protein NP_471582.1 2273258 R 272626 CDS NP_471583.1 16801315 1130994 2274218..2275225 1 NC_003212.1 hypothetical protein 2275225 1130994 lin2251 Listeria innocua Clip11262 hypothetical protein NP_471583.1 2274218 D 272626 CDS NP_471584.1 16801316 1130995 2275281..2275922 1 NC_003212.1 hypothetical protein 2275922 1130995 lin2252 Listeria innocua Clip11262 hypothetical protein NP_471584.1 2275281 D 272626 CDS NP_471585.1 16801317 1130996 complement(2275972..2276289) 1 NC_003212.1 hypothetical protein 2276289 1130996 lin2253 Listeria innocua Clip11262 hypothetical protein NP_471585.1 2275972 R 272626 CDS NP_471586.1 16801318 1130997 2276488..2276664 1 NC_003212.1 lin2254; hypothetical protein 2276664 1130997 lin2254 Listeria innocua Clip11262 hypothetical protein NP_471586.1 2276488 D 272626 CDS NP_471587.1 16801319 1130998 complement(2276709..2277008) 1 NC_003212.1 hypothetical protein 2277008 1130998 lin2255 Listeria innocua Clip11262 hypothetical protein NP_471587.1 2276709 R 272626 CDS NP_471588.1 16801320 1130999 complement(2277115..2277441) 1 NC_003212.1 similar to thioredoxin; hypothetical protein 2277441 1130999 lin2256 Listeria innocua Clip11262 hypothetical protein NP_471588.1 2277115 R 272626 CDS NP_471589.1 16801321 1131000 complement(2277438..2277875) 1 NC_003212.1 similar to flavodoxin; An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 2277875 1131000 lin2257 Listeria innocua Clip11262 flavodoxin NP_471589.1 2277438 R 272626 CDS NP_471590.1 16801322 1131002 complement(2277872..2278921) 1 NC_003212.1 similar to ribonucleoside-diphosphate reductase, subunit beta; B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2278921 nrdF 1131002 nrdF Listeria innocua Clip11262 ribonucleotide-diphosphate reductase subunit beta NP_471590.1 2277872 R 272626 CDS NP_471591.1 16801323 1131003 complement(2278977..2281268) 1 NC_003212.1 similar to ribonucleoside-diphosphate reductase, subunit alpha; Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2281268 1131003 lin2259 Listeria innocua Clip11262 ribonucleotide-diphosphate reductase subunit alpha NP_471591.1 2278977 R 272626 CDS NP_471592.1 16801324 1131004 2281803..2282144 1 NC_003212.1 lin2260; hypothetical protein 2282144 1131004 lin2260 Listeria innocua Clip11262 hypothetical protein NP_471592.1 2281803 D 272626 CDS NP_471593.1 16801325 1131005 complement(2282302..2282487) 1 NC_003212.1 similar to Bacillus subtilis YwmG protein; hypothetical protein 2282487 1131005 lin2261 Listeria innocua Clip11262 hypothetical protein NP_471593.1 2282302 R 272626 CDS NP_471594.1 16801326 1131006 complement(2282582..2283631) 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 2283631 1131006 lin2262 Listeria innocua Clip11262 hypothetical protein NP_471594.1 2282582 R 272626 CDS NP_471595.1 16801327 1131007 complement(2283654..2284622) 1 NC_003212.1 hypothetical protein 2284622 1131007 lin2263 Listeria innocua Clip11262 hypothetical protein NP_471595.1 2283654 R 272626 CDS NP_471596.1 16801328 1131008 complement(2284625..2285347) 1 NC_003212.1 lin2264; hypothetical protein 2285347 1131008 lin2264 Listeria innocua Clip11262 hypothetical protein NP_471596.1 2284625 R 272626 CDS NP_471597.1 16801329 1131010 complement(2285349..2286089) 1 NC_003212.1 hypothetical protein 2286089 1131010 lin2265 Listeria innocua Clip11262 hypothetical protein NP_471597.1 2285349 R 272626 CDS NP_471598.1 16801330 1131012 complement(2286105..2287181) 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 2287181 1131012 lin2266 Listeria innocua Clip11262 hypothetical protein NP_471598.1 2286105 R 272626 CDS NP_471599.1 16801331 1131013 complement(2287256..2288134) 1 NC_003212.1 similar to transcriptional regulator (AraC/XylS family); hypothetical protein 2288134 1131013 lin2267 Listeria innocua Clip11262 hypothetical protein NP_471599.1 2287256 R 272626 CDS NP_471600.1 16801332 1131014 complement(2288203..2288898) 1 NC_003212.1 similar to transcription regulator CRP/FNR family; hypothetical protein 2288898 1131014 lin2268 Listeria innocua Clip11262 hypothetical protein NP_471600.1 2288203 R 272626 CDS NP_471601.1 16801333 1131015 complement(2289151..2289822) 1 NC_003212.1 lin2269; hypothetical protein 2289822 1131015 lin2269 Listeria innocua Clip11262 hypothetical protein NP_471601.1 2289151 R 272626 CDS NP_471602.1 16801334 1131016 complement(2289887..2290504) 1 NC_003212.1 hypothetical protein 2290504 1131016 lin2270 Listeria innocua Clip11262 hypothetical protein NP_471602.1 2289887 R 272626 CDS NP_471603.1 16801335 1131017 2290636..2291025 1 NC_003212.1 similar to glyoxalase I; hypothetical protein 2291025 1131017 lin2271 Listeria innocua Clip11262 hypothetical protein NP_471603.1 2290636 D 272626 CDS NP_471604.1 16801336 1131018 2291051..2291209 1 NC_003212.1 lin2272; hypothetical protein 2291209 1131018 lin2272 Listeria innocua Clip11262 hypothetical protein NP_471604.1 2291051 D 272626 CDS NP_471605.1 16801337 1131019 complement(2291254..2292183) 1 NC_003212.1 hypothetical protein 2292183 1131019 lin2273 Listeria innocua Clip11262 hypothetical protein NP_471605.1 2291254 R 272626 CDS NP_471606.1 16801338 1131020 complement(2292205..2293428) 1 NC_003212.1 similar to antiporter proteins; hypothetical protein 2293428 1131020 lin2274 Listeria innocua Clip11262 hypothetical protein NP_471606.1 2292205 R 272626 CDS NP_471607.1 16801339 1131021 complement(2293425..2295008) 1 NC_003212.1 similar to propionate CoA-transferase; hypothetical protein 2295008 1131021 lin2275 Listeria innocua Clip11262 hypothetical protein NP_471607.1 2293425 R 272626 CDS NP_471608.1 16801340 1131023 complement(2295238..2296605) 1 NC_003212.1 similar to sigma-54-dependent transcriptional activator; hypothetical protein 2296605 1131023 lin2276 Listeria innocua Clip11262 hypothetical protein NP_471608.1 2295238 R 272626 CDS NP_471609.1 16801341 1131024 complement(2296711..2297784) 1 NC_003212.1 hypothetical protein 2297784 1131024 lin2277 Listeria innocua Clip11262 hypothetical protein NP_471609.1 2296711 R 272626 CDS NP_471610.1 16801342 1131025 complement(2297962..2298723) 1 NC_003212.1 similar to dehydrogenase; Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 2298723 fabG 1131025 fabG Listeria innocua Clip11262 3-ketoacyl-(acyl-carrier-protein) reductase NP_471610.1 2297962 R 272626 CDS NP_471611.1 16801343 1131026 2298908..2299471 1 NC_003212.1 similar to transcriptional regulator (tetR family); hypothetical protein 2299471 1131026 lin2279 Listeria innocua Clip11262 hypothetical protein NP_471611.1 2298908 D 272626 CDS NP_471612.1 16801344 1131027 2299577..2299924 1 NC_003212.1 hypothetical protein 2299924 1131027 lin2280 Listeria innocua Clip11262 hypothetical protein NP_471612.1 2299577 D 272626 CDS NP_471613.1 16801345 1131028 complement(2299966..2304834) 1 NC_003212.1 cell surface protein 2304834 1131028 lin2281 Listeria innocua Clip11262 cell surface protein NP_471613.1 2299966 R 272626 CDS NP_471614.1 16801346 1131029 complement(2305104..2310524) 1 NC_003212.1 peptidoglycan binding protein 2310524 1131029 lin2282 Listeria innocua Clip11262 peptidoglycan binding protein NP_471614.1 2305104 R 272626 CDS NP_471615.1 16801347 1131030 complement(2310705..2314160) 1 NC_003212.1 peptidoglycan binding protein 2314160 1131030 lin2283 Listeria innocua Clip11262 peptidoglycan binding protein NP_471615.1 2310705 R 272626 CDS NP_471616.1 16801348 1131031 complement(2314353..2314829) 1 NC_003212.1 hypothetical protein 2314829 1131031 lin2284 Listeria innocua Clip11262 hypothetical protein NP_471616.1 2314353 R 272626 CDS NP_471617.1 16801349 1131032 complement(2314890..2315630) 1 NC_003212.1 hypothetical protein 2315630 1131032 lin2285 Listeria innocua Clip11262 hypothetical protein NP_471617.1 2314890 R 272626 CDS NP_471618.1 16801350 1131033 complement(2315634..2316413) 1 NC_003212.1 similar to ferrichrome ABC transporter (ATP-binding protein); hypothetical protein 2316413 1131033 lin2286 Listeria innocua Clip11262 hypothetical protein NP_471618.1 2315634 R 272626 CDS NP_471619.1 16801351 1131035 complement(2316394..2317383) 1 NC_003212.1 similar to ferrichrome ABC transporter (permease); hypothetical protein 2317383 1131035 lin2287 Listeria innocua Clip11262 hypothetical protein NP_471619.1 2316394 R 272626 CDS NP_471620.1 16801352 1131037 complement(2317373..2318248) 1 NC_003212.1 similar to ferrichrome ABC transporter (binding protein); hypothetical protein 2318248 1131037 lin2288 Listeria innocua Clip11262 hypothetical protein NP_471620.1 2317373 R 272626 CDS NP_471621.1 16801353 1131038 complement(2318332..2320053) 1 NC_003212.1 lin2289; hypothetical protein 2320053 1131038 lin2289 Listeria innocua Clip11262 hypothetical protein NP_471621.1 2318332 R 272626 CDS NP_471622.1 16801354 1131039 complement(2320066..2320692) 1 NC_003212.1 lin2290; hypothetical protein 2320692 1131039 lin2290 Listeria innocua Clip11262 hypothetical protein NP_471622.1 2320066 R 272626 CDS NP_471623.1 16801355 1131040 complement(2320908..2321174) 1 NC_003212.1 lin2291; hypothetical protein 2321174 1131040 lin2291 Listeria innocua Clip11262 hypothetical protein NP_471623.1 2320908 R 272626 CDS NP_471624.1 16801356 1131041 complement(2321485..2323290) 1 NC_003212.1 similar to oligoendopeptidase; hypothetical protein 2323290 1131041 lin2292 Listeria innocua Clip11262 hypothetical protein NP_471624.1 2321485 R 272626 CDS NP_471625.1 16801357 1131042 complement(2323363..2324478) 1 NC_003212.1 similar to a putative competence protein from streptococcus pneumoniae; hypothetical protein 2324478 1131042 lin2293 Listeria innocua Clip11262 hypothetical protein NP_471625.1 2323363 R 272626 CDS NP_471626.1 16801358 1131043 complement(2324605..2325258) 1 NC_003212.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 2325258 mecA 1131043 mecA Listeria innocua Clip11262 adaptor protein NP_471626.1 2324605 R 272626 CDS NP_471627.1 16801359 1131044 complement(2325480..2325875) 1 NC_003212.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 2325875 spxA 1131044 spxA Listeria innocua Clip11262 transcriptional regulator Spx NP_471627.1 2325480 R 272626 CDS NP_471628.1 16801360 1131045 complement(2326195..2327163) 1 NC_003212.1 similar to oligopeptide ABC transporter (ATP-binding protein); hypothetical protein 2327163 1131045 lin2296 Listeria innocua Clip11262 hypothetical protein NP_471628.1 2326195 R 272626 CDS NP_471629.1 16801361 1131046 complement(2327160..2328236) 1 NC_003212.1 similar to oligopeptide ABC transporter (ATP-binding protein); hypothetical protein 2328236 1131046 lin2297 Listeria innocua Clip11262 hypothetical protein NP_471629.1 2327160 R 272626 CDS NP_471630.1 16801362 1131048 complement(2328254..2329288) 1 NC_003212.1 similar to oligopeptide ABC transporter (permease); hypothetical protein 2329288 1131048 lin2298 Listeria innocua Clip11262 hypothetical protein NP_471630.1 2328254 R 272626 CDS NP_471631.1 16801363 1131049 complement(2329288..2330217) 1 NC_003212.1 similar to oligopeptide ABC transporter (permease); hypothetical protein 2330217 1131049 lin2299 Listeria innocua Clip11262 hypothetical protein NP_471631.1 2329288 R 272626 CDS NP_471632.1 16801364 1131051 complement(2330495..2332174) 1 NC_003212.1 similar to pheromone ABC transporter (binding protein); hypothetical protein 2332174 1131051 lin2300 Listeria innocua Clip11262 hypothetical protein NP_471632.1 2330495 R 272626 CDS NP_471633.1 16801365 1131052 2333479..2334474 1 NC_003212.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2334474 trpS 1131052 trpS Listeria innocua Clip11262 tryptophanyl-tRNA synthetase NP_471633.1 2333479 D 272626 CDS NP_471634.1 16801366 1131053 complement(2334524..2334940) 1 NC_003212.1 hypothetical protein 2334940 1131053 lin2302 Listeria innocua Clip11262 hypothetical protein NP_471634.1 2334524 R 272626 CDS NP_471635.1 16801367 1131054 complement(2334924..2335376) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 2335376 1131054 lin2303 Listeria innocua Clip11262 hypothetical protein NP_471635.1 2334924 R 272626 CDS NP_471636.1 16801368 1131056 complement(2335496..2336737) 1 NC_003212.1 similar to 3-oxoacyl-acyl-carrier protein synthase; hypothetical protein 2336737 1131056 lin2304 Listeria innocua Clip11262 hypothetical protein NP_471636.1 2335496 R 272626 CDS NP_471637.1 16801369 1131057 complement(2336940..2337878) 1 NC_003212.1 similar to 3-oxoacyl- acyl-carrier protein synthase; FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 2337878 1131057 lin2305 Listeria innocua Clip11262 3-oxoacyl-(acyl carrier protein) synthase III NP_471637.1 2336940 R 272626 CDS NP_471638.1 16801370 1131058 complement(2337994..2339121) 1 NC_003212.1 similar to N-acetylmuramoyl-L-alanine amidase and to internalin B; hypothetical protein 2339121 1131058 lin2306 Listeria innocua Clip11262 hypothetical protein NP_471638.1 2337994 R 272626 CDS NP_471639.1 16801371 1131059 2339444..2339632 1 NC_003212.1 hypothetical protein 2339632 1131059 lin2307 Listeria innocua Clip11262 hypothetical protein NP_471639.1 2339444 D 272626 CDS NP_471640.1 16801372 1131060 complement(2339722..2340411) 1 NC_003212.1 similar to phosphoglyceromutase 1; hypothetical protein 2340411 1131060 lin2308 Listeria innocua Clip11262 hypothetical protein NP_471640.1 2339722 R 272626 CDS NP_471641.1 16801373 1131061 complement(2340502..2343102) 1 NC_003212.1 similar to endopeptidase Clp ATP-binding chain B (ClpB); hypothetical protein 2343102 1131061 lin2309 Listeria innocua Clip11262 hypothetical protein NP_471641.1 2340502 R 272626 CDS NP_471642.1 16801374 1131062 complement(2343250..2343927) 1 NC_003212.1 hypothetical protein 2343927 1131062 lin2310 Listeria innocua Clip11262 hypothetical protein NP_471642.1 2343250 R 272626 CDS NP_471643.1 16801375 1131063 complement(2344039..2344809) 1 NC_003212.1 hypothetical protein 2344809 1131063 lin2311 Listeria innocua Clip11262 hypothetical protein NP_471643.1 2344039 R 272626 CDS NP_471644.1 16801376 1131064 complement(2344873..2345658) 1 NC_003212.1 lin2312; hypothetical protein 2345658 1131064 lin2312 Listeria innocua Clip11262 hypothetical protein NP_471644.1 2344873 R 272626 CDS NP_471645.1 16801377 1131065 complement(2345780..2346124) 1 NC_003212.1 lin2313; hypothetical protein 2346124 1131065 lin2313 Listeria innocua Clip11262 hypothetical protein NP_471645.1 2345780 R 272626 CDS NP_471646.1 16801378 1131066 complement(2346278..2347207) 1 NC_003212.1 similar to ferrochelatase; protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 2347207 hemH 1131066 hemH Listeria innocua Clip11262 ferrochelatase NP_471646.1 2346278 R 272626 CDS NP_471647.1 16801379 1131067 complement(2347214..2348266) 1 NC_003212.1 similar to uroporphyrinogen III decarboxylase; catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 2348266 hemE 1131067 hemE Listeria innocua Clip11262 uroporphyrinogen decarboxylase NP_471647.1 2347214 R 272626 CDS NP_471648.1 16801380 1131068 2348463..2348966 1 NC_003212.1 hypothetical protein 2348966 1131068 lin2316 Listeria innocua Clip11262 hypothetical protein NP_471648.1 2348463 D 272626 CDS NP_471649.1 16801381 1131069 complement(2349005..2350228) 1 NC_003212.1 similar to ABC transporter (membrane protein); hypothetical protein 2350228 1131069 lin2317 Listeria innocua Clip11262 hypothetical protein NP_471649.1 2349005 R 272626 CDS NP_471650.1 16801382 1131070 complement(2350212..2350964) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2350964 1131070 lin2318 Listeria innocua Clip11262 hypothetical protein NP_471650.1 2350212 R 272626 CDS NP_471651.1 16801383 1131072 2351125..2351547 1 NC_003212.1 similar to histidine triad (HIT) protein; hypothetical protein 2351547 1131072 lin2319 Listeria innocua Clip11262 hypothetical protein NP_471651.1 2351125 D 272626 CDS NP_471652.1 16801384 1131073 2351577..2351939 1 NC_003212.1 hypothetical protein 2351939 1131073 lin2320 Listeria innocua Clip11262 hypothetical protein NP_471652.1 2351577 D 272626 CDS NP_471653.1 16801385 1131074 2352119..2352658 1 NC_003212.1 lin2321; hypothetical protein 2352658 1131074 lin2321 Listeria innocua Clip11262 hypothetical protein NP_471653.1 2352119 D 272626 CDS NP_471654.1 16801386 1131075 2352775..2353650 1 NC_003212.1 similar to post-translocation molecular chaperone; hypothetical protein 2353650 1131075 lin2322 Listeria innocua Clip11262 hypothetical protein NP_471654.1 2352775 D 272626 CDS NP_471655.1 16801387 1131076 complement(2353740..2354681) 1 NC_003212.1 similar to S. aureus Cbf1 protein; catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease YhaM 2354681 1131076 lin2323 Listeria innocua Clip11262 3'-5' exoribonuclease YhaM NP_471655.1 2353740 R 272626 CDS NP_471656.1 16801388 1131077 complement(2354726..2357452) 1 NC_003212.1 hypothetical protein 2357452 1131077 lin2324 Listeria innocua Clip11262 hypothetical protein NP_471656.1 2354726 R 272626 CDS NP_471657.1 16801389 1131078 complement(2357449..2358684) 1 NC_003212.1 hypothetical protein 2358684 1131078 lin2325 Listeria innocua Clip11262 hypothetical protein NP_471657.1 2357449 R 272626 CDS NP_471658.1 16801390 1131080 complement(2358828..2359181) 1 NC_003212.1 hypothetical protein 2359181 1131080 lin2326 Listeria innocua Clip11262 hypothetical protein NP_471658.1 2358828 R 272626 CDS NP_471659.1 16801391 1131081 complement(2359263..2360396) 1 NC_003212.1 hypothetical protein 2360396 1131081 lin2327 Listeria innocua Clip11262 hypothetical protein NP_471659.1 2359263 R 272626 CDS NP_471660.1 16801392 1131082 complement(2360500..2361867) 1 NC_003212.1 similar to fumarate hydratase; class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2361867 fumC 1131082 fumC Listeria innocua Clip11262 fumarate hydratase NP_471660.1 2360500 R 272626 CDS NP_471661.1 16801393 1131083 complement(2362731..2363633) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2363633 1131083 lin2330 Listeria innocua Clip11262 hypothetical protein NP_471661.1 2362731 R 272626 CDS NP_471662.1 16801394 1131085 complement(2363936..2366080) 1 NC_003212.1 similar to penicillin-binding protein; hypothetical protein 2366080 1131085 lin2331 Listeria innocua Clip11262 hypothetical protein NP_471662.1 2363936 R 272626 CDS NP_471663.1 16801395 1131086 2366404..2366829 1 NC_003212.1 similar to arsenate reductase; hypothetical protein 2366829 1131086 lin2332 Listeria innocua Clip11262 hypothetical protein NP_471663.1 2366404 D 272626 CDS NP_471664.1 16801396 1131087 2366892..2367761 1 NC_003212.1 hypothetical protein 2367761 1131087 lin2333 Listeria innocua Clip11262 hypothetical protein NP_471664.1 2366892 D 272626 CDS NP_471665.1 16801397 1131088 2368019..2369323 1 NC_003212.1 hypothetical protein 2369323 1131088 lin2334 Listeria innocua Clip11262 hypothetical protein NP_471665.1 2368019 D 272626 CDS NP_471666.1 16801398 1131089 complement(2369364..2370242) 1 NC_003212.1 similar to transcriptional regulators (LysR family); hypothetical protein 2370242 1131089 lin2335 Listeria innocua Clip11262 hypothetical protein NP_471666.1 2369364 R 272626 CDS NP_471667.1 16801399 1131090 2370543..2371397 1 NC_003212.1 hypothetical protein 2371397 1131090 lin2336 Listeria innocua Clip11262 hypothetical protein NP_471667.1 2370543 D 272626 CDS NP_471668.1 16801400 1131091 2371467..2373392 1 NC_003212.1 similar to NADH oxidase; hypothetical protein 2373392 1131091 lin2337 Listeria innocua Clip11262 hypothetical protein NP_471668.1 2371467 D 272626 CDS NP_471669.1 16801401 1131092 2373452..2374321 1 NC_003212.1 similar to oxidoreductase; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2374321 1131092 lin2338 Listeria innocua Clip11262 shikimate 5-dehydrogenase NP_471669.1 2373452 D 272626 CDS NP_471670.1 16801402 1131093 2374354..2375562 1 NC_003212.1 similar to transport system permease protein; hypothetical protein 2375562 1131093 lin2339 Listeria innocua Clip11262 hypothetical protein NP_471670.1 2374354 D 272626 CDS NP_471671.1 16801403 1131094 2375722..2376912 1 NC_003212.1 similar to transport system permease protein; hypothetical protein 2376912 1131094 lin2340 Listeria innocua Clip11262 hypothetical protein NP_471671.1 2375722 D 272626 CDS NP_471672.1 16801404 1131095 complement(2376957..2378021) 1 NC_003212.1 lin2341; hypothetical protein 2378021 1131095 lin2341 Listeria innocua Clip11262 hypothetical protein NP_471672.1 2376957 R 272626 CDS NP_471673.1 16801405 1131096 complement(2378021..2378896) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2378896 1131096 lin2342 Listeria innocua Clip11262 hypothetical protein NP_471673.1 2378021 R 272626 CDS NP_471674.1 16801406 1131098 complement(2378893..2379282) 1 NC_003212.1 similar to transcriptional regulators (GntR family); hypothetical protein 2379282 1131098 lin2343 Listeria innocua Clip11262 hypothetical protein NP_471674.1 2378893 R 272626 CDS NP_471675.1 16801407 1131100 complement(2379374..2379856) 1 NC_003212.1 similar to O6-methylguanine-DNA methyltransferase; hypothetical protein 2379856 1131100 lin2344 Listeria innocua Clip11262 hypothetical protein NP_471675.1 2379374 R 272626 CDS NP_471676.1 16801408 1131101 2380002..2380556 1 NC_003212.1 similar to methylphosphotriester-DNA alkyltransferase and transcriptional regulator; hypothetical protein 2380556 1131101 lin2345 Listeria innocua Clip11262 hypothetical protein NP_471676.1 2380002 D 272626 CDS NP_471677.1 16801409 1131102 2380578..2381447 1 NC_003212.1 similar to putative ribosomal large subunit pseudouridine synthase; hypothetical protein 2381447 1131102 lin2346 Listeria innocua Clip11262 hypothetical protein NP_471677.1 2380578 D 272626 CDS NP_471678.1 16801410 1131103 complement(2381460..2381852) 1 NC_003212.1 hypothetical protein 2381852 1131103 lin2347 Listeria innocua Clip11262 hypothetical protein NP_471678.1 2381460 R 272626 CDS NP_471679.1 16801411 1131104 complement(2381854..2382510) 1 NC_003212.1 hypothetical protein 2382510 1131104 lin2348 Listeria innocua Clip11262 hypothetical protein NP_471679.1 2381854 R 272626 CDS NP_471680.1 16801412 1131105 complement(2382507..2383391) 1 NC_003212.1 similar to oxidoreductase; hypothetical protein 2383391 1131105 lin2349 Listeria innocua Clip11262 hypothetical protein NP_471680.1 2382507 R 272626 CDS NP_471681.1 16801413 1131107 2383777..2384397 1 NC_003212.1 hypothetical protein 2384397 1131107 lin2350 Listeria innocua Clip11262 hypothetical protein NP_471681.1 2383777 D 272626 CDS NP_471682.1 16801414 1131108 2384411..2385409 1 NC_003212.1 similar to low-affinity inorganic phosphate transporter; hypothetical protein 2385409 1131108 lin2351 Listeria innocua Clip11262 hypothetical protein NP_471682.1 2384411 D 272626 CDS NP_471683.1 16801415 1131109 2385601..2387061 1 NC_003212.1 similar to amino acid ABC transporter, permease protein; hypothetical protein 2387061 1131109 lin2352 Listeria innocua Clip11262 hypothetical protein NP_471683.1 2385601 D 272626 CDS NP_471684.1 16801416 1131111 2387054..2387779 1 NC_003212.1 similar to amino acid ABC transporter (ATP-binding protein); hypothetical protein 2387779 1131111 lin2353 Listeria innocua Clip11262 hypothetical protein NP_471684.1 2387054 D 272626 CDS NP_471685.1 16801417 1131112 2387853..2389004 1 NC_003212.1 similar to aspartate aminotransferase; catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2389004 1131112 lin2354 Listeria innocua Clip11262 aspartate aminotransferase NP_471685.1 2387853 D 272626 CDS NP_471686.1 16801418 1131113 complement(2389048..2389677) 1 NC_003212.1 similar to phosphoglucomutase; hypothetical protein 2389677 1131113 lin2355 Listeria innocua Clip11262 hypothetical protein NP_471686.1 2389048 R 272626 CDS NP_471687.1 16801419 1131114 2389850..2391142 1 NC_003212.1 hypothetical protein 2391142 1131114 lin2356 Listeria innocua Clip11262 hypothetical protein NP_471687.1 2389850 D 272626 CDS NP_471688.1 16801420 1131115 2391252..2391518 1 NC_003212.1 lin2357; hypothetical protein 2391518 1131115 lin2357 Listeria innocua Clip11262 hypothetical protein NP_471688.1 2391252 D 272626 CDS NP_471689.1 16801421 1131117 complement(2391559..2392080) 1 NC_003212.1 hypothetical protein 2392080 1131117 lin2358 Listeria innocua Clip11262 hypothetical protein NP_471689.1 2391559 R 272626 CDS NP_471690.1 16801422 1131118 complement(2392582..2392773) 1 NC_003212.1 lin2359; hypothetical protein 2392773 1131118 lin2359 Listeria innocua Clip11262 hypothetical protein NP_471690.1 2392582 R 272626 CDS NP_471691.1 16801423 1131119 2392925..2393278 1 NC_003212.1 similar to phosphotransferase system (PTS) beta-glucoside-specific enzyme IIA; hypothetical protein 2393278 1131119 lin2360 Listeria innocua Clip11262 hypothetical protein NP_471691.1 2392925 D 272626 CDS NP_471692.1 16801424 1131120 complement(2393275..2394150) 1 NC_003212.1 hypothetical protein 2394150 1131120 lin2361 Listeria innocua Clip11262 hypothetical protein NP_471692.1 2393275 R 272626 CDS NP_471693.1 16801425 1131121 complement(2394228..2394536) 1 NC_003212.1 hypothetical protein 2394536 1131121 lin2362 Listeria innocua Clip11262 hypothetical protein NP_471693.1 2394228 R 272626 CDS NP_471694.1 16801426 1131122 complement(2394601..2395353) 1 NC_003212.1 hypothetical protein 2395353 1131122 lin2363 Listeria innocua Clip11262 hypothetical protein NP_471694.1 2394601 R 272626 CDS NP_471695.1 16801427 1131123 2395504..2396316 1 NC_003212.1 similar to unkown proteins; hypothetical protein 2396316 1131123 lin2364 Listeria innocua Clip11262 hypothetical protein NP_471695.1 2395504 D 272626 CDS NP_471696.1 16801428 1131124 complement(2396393..2397295) 1 NC_003212.1 hypothetical protein 2397295 1131124 lin2365 Listeria innocua Clip11262 hypothetical protein NP_471696.1 2396393 R 272626 CDS NP_471697.1 16801429 1131125 complement(2397379..2397741) 1 NC_003212.1 hypothetical protein 2397741 1131125 lin2366 Listeria innocua Clip11262 hypothetical protein NP_471697.1 2397379 R 272626 CDS NP_471698.1 16801430 1131126 complement(2397761..2398609) 1 NC_003212.1 hypothetical protein 2398609 1131126 lin2367 Listeria innocua Clip11262 hypothetical protein NP_471698.1 2397761 R 272626 CDS NP_471699.1 16801431 1131127 complement(2398610..2402317) 1 NC_003212.1 similar to ATP-dependent deoxyribonuclease (subunit A); hypothetical protein 2402317 1131127 lin2368 Listeria innocua Clip11262 hypothetical protein NP_471699.1 2398610 R 272626 CDS NP_471700.1 16801432 1131129 complement(2402319..2405792) 1 NC_003212.1 similar to ATP-dependent deoxyribonuclease (subunit B); hypothetical protein 2405792 1131129 lin2369 Listeria innocua Clip11262 hypothetical protein NP_471700.1 2402319 R 272626 CDS NP_471701.1 16801433 1131131 complement(2405942..2406178) 1 NC_003212.1 lin2370; hypothetical protein 2406178 1131131 lin2370 Listeria innocua Clip11262 hypothetical protein NP_471701.1 2405942 R 272626 CDS NP_471702.1 16801434 1131132 2406428..2406718 1 NC_003212.1 similar to competence transcription factor ComK, N terminal part; comK' 2406718 1131132 lin2371 Listeria innocua Clip11262 comK' NP_471702.1 2406428 D 272626 CDS NP_471703.1 16801435 1131133 complement(2406902..2407135) 1 NC_003212.1 lin2372; hypothetical protein 2407135 1131133 lin2372 Listeria innocua Clip11262 hypothetical protein NP_471703.1 2406902 R 272626 CDS NP_471704.1 16801436 1131134 complement(2407382..2408278) 1 NC_003212.1 similar to AbiD phage protein; hypothetical protein 2408278 1131134 lin2373 Listeria innocua Clip11262 hypothetical protein NP_471704.1 2407382 R 272626 CDS NP_471705.1 16801437 1131135 complement(2408641..2409591) 1 NC_003212.1 similar to N-acetylmuramoyl-L-alanine amidase (N-terminal part) and to L-alanoyl-D-glutamate peptidase (C-terminal part); hypothetical protein 2409591 1131135 lin2374 Listeria innocua Clip11262 hypothetical protein NP_471705.1 2408641 R 272626 CDS NP_471706.1 16801438 1131136 complement(2409591..2409872) 1 NC_003212.1 similar to phage related proteins; hypothetical protein 2409872 1131136 lin2375 Listeria innocua Clip11262 hypothetical protein NP_471706.1 2409591 R 272626 CDS NP_471707.1 16801439 1131138 complement(2409872..2410177) 1 NC_003212.1 lin2376; hypothetical protein 2410177 1131138 lin2376 Listeria innocua Clip11262 hypothetical protein NP_471707.1 2409872 R 272626 CDS NP_471708.1 16801440 1131140 complement(2410218..2410364) 1 NC_003212.1 lin2377; hypothetical protein 2410364 1131140 lin2377 Listeria innocua Clip11262 hypothetical protein NP_471708.1 2410218 R 272626 CDS NP_471709.1 16801441 1131141 complement(2410365..2410706) 1 NC_003212.1 lin2378; hypothetical protein 2410706 1131141 lin2378 Listeria innocua Clip11262 hypothetical protein NP_471709.1 2410365 R 272626 CDS NP_471710.1 16801442 1131143 complement(2410703..2411776) 1 NC_003212.1 similar to protein gp20 [Bacteriophage A118]; hypothetical protein 2411776 1131143 lin2379 Listeria innocua Clip11262 hypothetical protein NP_471710.1 2410703 R 272626 CDS NP_471711.1 16801443 1131145 complement(2411773..2412801) 1 NC_003212.1 similar to protein gp19 [Bacteriophage A118]; hypothetical protein 2412801 1131145 lin2380 Listeria innocua Clip11262 hypothetical protein NP_471711.1 2411773 R 272626 CDS NP_471712.1 16801444 1131147 complement(2412798..2413811) 1 NC_003212.1 similar to protein R372 - Lactobacillus phage phi-gle; hypothetical protein 2413811 1131147 lin2381 Listeria innocua Clip11262 hypothetical protein NP_471712.1 2412798 R 272626 CDS NP_471713.1 16801445 1131149 complement(2413824..2414648) 1 NC_003212.1 similar to gp17 [Bacteriophage A118]; hypothetical protein 2414648 1131149 lin2382 Listeria innocua Clip11262 hypothetical protein NP_471713.1 2413824 R 272626 CDS NP_471714.1 16801446 1131150 complement(2414652..2419457) 1 NC_003212.1 similar to hypothetical protein [Lactobacillus casei bacteriophage A2]; hypothetical protein 2419457 1131150 lin2383 Listeria innocua Clip11262 hypothetical protein NP_471714.1 2414652 R 272626 CDS NP_471715.1 16801447 1131152 complement(2419770..2420201) 1 NC_003212.1 lin2384; hypothetical protein 2420201 1131152 lin2384 Listeria innocua Clip11262 hypothetical protein NP_471715.1 2419770 R 272626 CDS NP_471716.1 16801448 1131153 complement(2420251..2420937) 1 NC_003212.1 similar to protein gp13 [Bacteriophage A118]; hypothetical protein 2420937 1131153 lin2385 Listeria innocua Clip11262 hypothetical protein NP_471716.1 2420251 R 272626 CDS NP_471717.1 16801449 1131154 complement(2420942..2421313) 1 NC_003212.1 lin2386; hypothetical protein 2421313 1131154 lin2386 Listeria innocua Clip11262 hypothetical protein NP_471717.1 2420942 R 272626 CDS NP_471718.1 16801450 1131156 complement(2421617..2421982) 1 NC_003212.1 lin2387; hypothetical protein 2421982 1131156 lin2387 Listeria innocua Clip11262 hypothetical protein NP_471718.1 2421617 R 272626 CDS NP_471719.1 16801451 1131157 complement(2421982..2422335) 1 NC_003212.1 lin2388; hypothetical protein 2422335 1131157 lin2388 Listeria innocua Clip11262 hypothetical protein NP_471719.1 2421982 R 272626 CDS NP_471720.1 16801452 1131159 complement(2422336..2422491) 1 NC_003212.1 lin2389; hypothetical protein 2422491 1131159 lin2389 Listeria innocua Clip11262 hypothetical protein NP_471720.1 2422336 R 272626 CDS NP_471721.1 16801453 1131161 complement(2422505..2423377) 1 NC_003212.1 similar to main capsid protein Gp34 - Lactobacillus delbrueckii subsp. bulgaricus phage mv4; hypothetical protein 2423377 1131161 lin2390 Listeria innocua Clip11262 hypothetical protein NP_471721.1 2422505 R 272626 CDS NP_471722.1 16801454 1131162 complement(2423400..2423954) 1 NC_003212.1 lin2391; hypothetical protein 2423954 1131162 lin2391 Listeria innocua Clip11262 hypothetical protein NP_471722.1 2423400 R 272626 CDS NP_471723.1 16801455 1131163 complement(2424049..2425092) 1 NC_003212.1 similar to protein gp4 [Bacteriophage A118]; hypothetical protein 2425092 1131163 lin2392 Listeria innocua Clip11262 hypothetical protein NP_471723.1 2424049 R 272626 CDS NP_471724.1 16801456 1131164 complement(2425097..2426653) 1 NC_003212.1 lin2393; hypothetical protein 2426653 1131164 lin2393 Listeria innocua Clip11262 hypothetical protein NP_471724.1 2425097 R 272626 CDS NP_471725.1 16801457 1131166 complement(2426668..2427987) 1 NC_003212.1 lin2394; hypothetical protein 2427987 1131166 lin2394 Listeria innocua Clip11262 hypothetical protein NP_471725.1 2426668 R 272626 CDS NP_471726.1 16801458 1131167 complement(2427980..2428720) 1 NC_003212.1 some similarities to phage-related terminase small subunit homolog yqaS; hypothetical protein 2428720 1131167 lin2395 Listeria innocua Clip11262 hypothetical protein NP_471726.1 2427980 R 272626 CDS NP_471727.1 16801459 1131169 complement(2428760..2428987) 1 NC_003212.1 lin2396; hypothetical protein 2428987 1131169 lin2396 Listeria innocua Clip11262 hypothetical protein NP_471727.1 2428760 R 272626 CDS NP_471728.1 16801460 1131170 complement(2429269..2429841) 1 NC_003212.1 similar to sigma factor-like positive control protein of Bacillus subtilis; Positive regulatory protein that acts at the late promoter PL; positive control sigma-like factor 2429841 1131170 lin2397 Listeria innocua Clip11262 positive control sigma-like factor NP_471728.1 2429269 R 272626 CDS NP_471729.1 16801461 1131171 complement(2429929..2430084) 1 NC_003212.1 hypothetical protein 2430084 1131171 lin2398 Listeria innocua Clip11262 hypothetical protein NP_471729.1 2429929 R 272626 CDS NP_471730.1 16801462 1131172 complement(2430125..2430508) 1 NC_003212.1 lin2399; hypothetical protein 2430508 1131172 lin2399 Listeria innocua Clip11262 hypothetical protein NP_471730.1 2430125 R 272626 CDS NP_471731.1 16801463 1131173 complement(2430512..2430916) 1 NC_003212.1 similar to Lactococcus lactis prophage pi3 protein 45; hypothetical protein 2430916 1131173 lin2400 Listeria innocua Clip11262 hypothetical protein NP_471731.1 2430512 R 272626 CDS NP_471732.1 16801464 1131175 complement(2430861..2431043) 1 NC_003212.1 lin2401; hypothetical protein 2431043 1131175 lin2401 Listeria innocua Clip11262 hypothetical protein NP_471732.1 2430861 R 272626 CDS NP_471733.1 16801465 1131177 complement(2431065..2431547) 1 NC_003212.1 similar to single-stranded DNA-binding protein; hypothetical protein 2431547 1131177 lin2402 Listeria innocua Clip11262 hypothetical protein NP_471733.1 2431065 R 272626 CDS NP_471734.1 16801466 1131178 complement(2431924..2432103) 1 NC_003212.1 lin2403; hypothetical protein 2432103 1131178 lin2403 Listeria innocua Clip11262 hypothetical protein NP_471734.1 2431924 R 272626 CDS NP_471735.1 16801467 1131179 complement(2432100..2432270) 1 NC_003212.1 lin2404; hypothetical protein 2432270 1131179 lin2404 Listeria innocua Clip11262 hypothetical protein NP_471735.1 2432100 R 272626 CDS NP_471736.1 16801468 1131181 complement(2432412..2432621) 1 NC_003212.1 lin2405; hypothetical protein 2432621 1131181 lin2405 Listeria innocua Clip11262 hypothetical protein NP_471736.1 2432412 R 272626 CDS NP_471737.1 16801469 1131182 complement(2432836..2432982) 1 NC_003212.1 Protein gp52 [Bacteriophage A118]; protein gp52 2432982 1131182 lin2406 Listeria innocua Clip11262 protein gp52 NP_471737.1 2432836 R 272626 CDS NP_471738.1 16801470 1131184 complement(2433490..2433720) 1 NC_003212.1 lin2408; hypothetical protein 2433720 1131184 lin2408 Listeria innocua Clip11262 hypothetical protein NP_471738.1 2433490 R 272626 CDS NP_471739.1 16801471 1131185 complement(2433733..2434677) 1 NC_003212.1 similar to intrgase proteins; hypothetical protein 2434677 1131185 lin2409 Listeria innocua Clip11262 hypothetical protein NP_471739.1 2433733 R 272626 CDS NP_471740.1 16801472 1131186 complement(2434688..2435401) 1 NC_003212.1 similar to phage related proteins; hypothetical protein 2435401 1131186 lin2410 Listeria innocua Clip11262 hypothetical protein NP_471740.1 2434688 R 272626 CDS NP_471741.1 16801473 1131187 complement(2435422..2435697) 1 NC_003212.1 lin2411; hypothetical protein 2435697 1131187 lin2411 Listeria innocua Clip11262 hypothetical protein NP_471741.1 2435422 R 272626 CDS NP_471742.1 16801474 1131188 complement(2435694..2436626) 1 NC_003212.1 highly similar to gp49 [Bacteriophage A118]; hypothetical protein 2436626 1131188 lin2412 Listeria innocua Clip11262 hypothetical protein NP_471742.1 2435694 R 272626 CDS NP_471743.1 16801475 1131190 complement(2436646..2437461) 1 NC_003212.1 highly similar to putative recombinase [Bacteriophage A118]; hypothetical protein 2437461 1131190 lin2413 Listeria innocua Clip11262 hypothetical protein NP_471743.1 2436646 R 272626 CDS NP_471744.1 16801476 1131191 complement(2437461..2438420) 1 NC_003212.1 gp47 [Bacteriophage A118]; hypothetical protein 2438420 1131191 lin2414 Listeria innocua Clip11262 hypothetical protein NP_471744.1 2437461 R 272626 CDS NP_471745.1 16801477 1131193 complement(2438652..2438840) 1 NC_003212.1 lin2415; hypothetical protein 2438840 1131193 lin2415 Listeria innocua Clip11262 hypothetical protein NP_471745.1 2438652 R 272626 CDS NP_471746.1 16801478 1131194 complement(2438948..2439163) 1 NC_003212.1 gp44 [Bacteriophage A118]; gp44 2439163 1131194 lin2416 Listeria innocua Clip11262 gp44 NP_471746.1 2438948 R 272626 CDS NP_471747.1 16801479 1131195 complement(2439160..2439693) 1 NC_003212.1 gp43 [Bacteriophage A118]; hypothetical protein 2439693 1131195 lin2417 Listeria innocua Clip11262 hypothetical protein NP_471747.1 2439160 R 272626 CDS NP_471748.1 16801480 1131197 complement(2439816..2440586) 1 NC_003212.1 similar to anti-repressor; hypothetical protein 2440586 1131197 lin2418 Listeria innocua Clip11262 hypothetical protein NP_471748.1 2439816 R 272626 CDS NP_471749.1 16801481 1131198 complement(2440885..2441046) 1 NC_003212.1 lin2419; hypothetical protein 2441046 1131198 lin2419 Listeria innocua Clip11262 hypothetical protein NP_471749.1 2440885 R 272626 CDS NP_471750.1 16801482 1131199 complement(2441046..2441312) 1 NC_003212.1 similar to Bacteriophage A118 protein gp40; hypothetical protein 2441312 1131199 lin2420 Listeria innocua Clip11262 hypothetical protein NP_471750.1 2441046 R 272626 CDS NP_471751.1 16801483 1131201 complement(2441522..2441773) 1 NC_003212.1 lin2421; hypothetical protein 2441773 1131201 lin2421 Listeria innocua Clip11262 hypothetical protein NP_471751.1 2441522 R 272626 CDS NP_471752.1 16801484 1131202 2441922..2442404 1 NC_003212.1 similar to Bacteriophage A118 putative repressor protein; hypothetical protein 2442404 1131202 lin2422 Listeria innocua Clip11262 hypothetical protein NP_471752.1 2441922 D 272626 CDS NP_471753.1 16801485 1131203 2442784..2443002 1 NC_003212.1 similar to Bacteriophage A118 protein gp34; hypothetical protein 2443002 1131203 lin2423 Listeria innocua Clip11262 hypothetical protein NP_471753.1 2442784 D 272626 CDS NP_471754.1 16801486 1131204 2443018..2443740 1 NC_003212.1 similar to protein gp33 [Bacteriophage A118]; hypothetical protein 2443740 1131204 lin2424 Listeria innocua Clip11262 hypothetical protein NP_471754.1 2443018 D 272626 CDS NP_471755.1 16801487 1131205 2443761..2444468 1 NC_003212.1 lin2425; hypothetical protein 2444468 1131205 lin2425 Listeria innocua Clip11262 hypothetical protein NP_471755.1 2443761 D 272626 CDS NP_471756.1 16801488 1131206 2444533..2445891 1 NC_003212.1 putative integrase [Bacteriophage A118]; putative integrase 2445891 int 1131206 int Listeria innocua Clip11262 putative integrase NP_471756.1 2444533 D 272626 CDS NP_471757.1 16801489 1131207 2445882..2446349 1 NC_003212.1 competence transcription factor (C-terminal part) 2446349 comK 1131207 comK Listeria innocua Clip11262 competence transcription factor (C-terminal part) NP_471757.1 2445882 D 272626 CDS NP_471758.1 16801490 1131208 complement(2446397..2446744) 1 NC_003212.1 similar to transcriptional regulator; hypothetical protein 2446744 1131208 lin2428 Listeria innocua Clip11262 hypothetical protein NP_471758.1 2446397 R 272626 CDS NP_471759.1 16801491 1131209 complement(2446851..2448749) 1 NC_003212.1 highly similar to phosphotransferase system (PTS) fructose-specific enzyme IIABC component; hypothetical protein 2448749 1131209 lin2429 Listeria innocua Clip11262 hypothetical protein NP_471759.1 2446851 R 272626 CDS NP_471760.1 16801492 1131210 complement(2448751..2449674) 1 NC_003212.1 fructose-1-phosphate kinase 2449674 fruB 1131210 fruB Listeria innocua Clip11262 fructose-1-phosphate kinase NP_471760.1 2448751 R 272626 CDS NP_471761.1 16801493 1131212 complement(2449671..2450423) 1 NC_003212.1 similar to regulatory protein DeoR family; hypothetical protein 2450423 1131212 lin2431 Listeria innocua Clip11262 hypothetical protein NP_471761.1 2449671 R 272626 CDS NP_471762.1 16801494 1131214 2450639..2451964 1 NC_003212.1 aminopeptidase C 2451964 pepC 1131214 pepC Listeria innocua Clip11262 aminopeptidase C NP_471762.1 2450639 D 272626 CDS NP_471763.1 16801495 1131215 complement(2451961..2452404) 1 NC_003212.1 hypothetical protein 2452404 1131215 lin2433 Listeria innocua Clip11262 hypothetical protein NP_471763.1 2451961 R 272626 CDS NP_471764.1 16801496 1131216 complement(2452484..2453395) 1 NC_003212.1 similar to Erwinia chrysanthemi IndA protein; hypothetical protein 2453395 1131216 lin2434 Listeria innocua Clip11262 hypothetical protein NP_471764.1 2452484 R 272626 CDS NP_471765.1 16801497 1131217 complement(2453392..2454510) 1 NC_003212.1 similar to carbohydrate kinases; hypothetical protein 2454510 1131217 lin2435 Listeria innocua Clip11262 hypothetical protein NP_471765.1 2453392 R 272626 CDS NP_471766.1 16801498 1131219 complement(2454642..2455343) 1 NC_003212.1 similar to 16S pseudouridylate synthase; hypothetical protein 2455343 1131219 lin2436 Listeria innocua Clip11262 hypothetical protein NP_471766.1 2454642 R 272626 CDS NP_471767.1 16801499 1131220 complement(2455415..2456737) 1 NC_003212.1 similar to nitrilotriacetate monooxygenase; hypothetical protein 2456737 1131220 lin2437 Listeria innocua Clip11262 hypothetical protein NP_471767.1 2455415 R 272626 CDS NP_471768.1 16801500 1131221 complement(2456734..2457000) 1 NC_003212.1 similar to Bacillus subtilis YtnI protein; hypothetical protein 2457000 1131221 lin2438 Listeria innocua Clip11262 hypothetical protein NP_471768.1 2456734 R 272626 CDS NP_471769.1 16801501 1131223 complement(2456993..2457988) 1 NC_003212.1 hypothetical protein 2457988 1131223 lin2439 Listeria innocua Clip11262 hypothetical protein NP_471769.1 2456993 R 272626 CDS NP_471770.1 16801502 1131225 complement(2457985..2458764) 1 NC_003212.1 similar to amino acid ABC-transporter, ATP-binding protein; hypothetical protein 2458764 1131225 lin2440 Listeria innocua Clip11262 hypothetical protein NP_471770.1 2457985 R 272626 CDS NP_471771.1 16801503 1131227 complement(2458761..2459468) 1 NC_003212.1 similar to amino acid ABC transporter (permease); hypothetical protein 2459468 1131227 lin2441 Listeria innocua Clip11262 hypothetical protein NP_471771.1 2458761 R 272626 CDS NP_471772.1 16801504 1131229 complement(2459482..2460198) 1 NC_003212.1 similar to amino acid ABC-transporter (permease); hypothetical protein 2460198 1131229 lin2442 Listeria innocua Clip11262 hypothetical protein NP_471772.1 2459482 R 272626 CDS NP_471773.1 16801505 1131230 complement(2460220..2461029) 1 NC_003212.1 similar to amino acid ABC transporter (binding protein); hypothetical protein 2461029 1131230 lin2443 Listeria innocua Clip11262 hypothetical protein NP_471773.1 2460220 R 272626 CDS NP_471774.1 16801506 1131231 complement(2461046..2461582) 1 NC_003212.1 similar to Bacillus subtilis YtmI protein; hypothetical protein 2461582 1131231 lin2444 Listeria innocua Clip11262 hypothetical protein NP_471774.1 2461046 R 272626 CDS NP_471775.1 16801507 1131232 complement(2461598..2462143) 1 NC_003212.1 similar to NADH-dependent FMN reductase; hypothetical protein 2462143 1131232 lin2445 Listeria innocua Clip11262 hypothetical protein NP_471775.1 2461598 R 272626 CDS NP_471776.1 16801508 1131233 2462385..2463284 1 NC_003212.1 similar to LysR family transcription regulator; hypothetical protein 2463284 1131233 lin2446 Listeria innocua Clip11262 hypothetical protein NP_471776.1 2462385 D 272626 CDS NP_471777.1 16801509 1131234 complement(2463311..2465263) 1 NC_003212.1 similar to putative Na+/H+ antiporter; hypothetical protein 2465263 1131234 lin2447 Listeria innocua Clip11262 hypothetical protein NP_471777.1 2463311 R 272626 CDS NP_471778.1 16801510 1131235 complement(2465393..2466991) 1 NC_003212.1 hypothetical protein 2466991 1131235 lin2448 Listeria innocua Clip11262 hypothetical protein NP_471778.1 2465393 R 272626 CDS NP_471779.1 16801511 1131236 complement(2466995..2468236) 1 NC_003212.1 Similar to multidrug resistance protein; hypothetical protein 2468236 1131236 lin2449 Listeria innocua Clip11262 hypothetical protein NP_471779.1 2466995 R 272626 CDS NP_471780.1 16801512 1131238 complement(2468436..2469047) 1 NC_003212.1 lin2450; hypothetical protein 2469047 1131238 lin2450 Listeria innocua Clip11262 hypothetical protein NP_471780.1 2468436 R 272626 CDS NP_471781.1 16801513 1131239 complement(2469236..2469766) 1 NC_003212.1 hypothetical protein 2469766 1131239 lin2451 Listeria innocua Clip11262 hypothetical protein NP_471781.1 2469236 R 272626 CDS NP_471782.1 16801514 1131240 complement(2469781..2470512) 1 NC_003212.1 similar to N-acetylglucosamine-6-phosphate isomerase; hypothetical protein 2470512 1131240 lin2452 Listeria innocua Clip11262 hypothetical protein NP_471782.1 2469781 R 272626 CDS NP_471783.1 16801515 1131241 complement(2470556..2471401) 1 NC_003212.1 hypothetical protein 2471401 1131241 lin2453 Listeria innocua Clip11262 hypothetical protein NP_471783.1 2470556 R 272626 CDS NP_471784.1 16801516 1131242 complement(2471523..2472830) 1 NC_003212.1 similar to 6-phospho-beta-glucosidase; hypothetical protein 2472830 1131242 lin2454 Listeria innocua Clip11262 hypothetical protein NP_471784.1 2471523 R 272626 CDS NP_471785.1 16801517 1131243 complement(2472851..2474767) 1 NC_003212.1 similar to transcription antiterminator BglG family; hypothetical protein 2474767 1131243 lin2455 Listeria innocua Clip11262 hypothetical protein NP_471785.1 2472851 R 272626 CDS NP_471786.1 16801518 1131244 complement(2474783..2475529) 1 NC_003212.1 hypothetical protein 2475529 1131244 lin2456 Listeria innocua Clip11262 hypothetical protein NP_471786.1 2474783 R 272626 CDS NP_471787.1 16801519 1131245 complement(2475543..2475857) 1 NC_003212.1 similar to PTS system, cellobiose-specific enzyme IIA component; hypothetical protein 2475857 1131245 lin2457 Listeria innocua Clip11262 hypothetical protein NP_471787.1 2475543 R 272626 CDS NP_471788.1 16801520 1131246 complement(2475857..2476213) 1 NC_003212.1 similar to PTS system, cellobiose-specific enzyme IIB component; hypothetical protein 2476213 1131246 lin2458 Listeria innocua Clip11262 hypothetical protein NP_471788.1 2475857 R 272626 CDS NP_471789.1 16801521 1131248 complement(2476232..2477533) 1 NC_003212.1 similar to PTS system, cellobiose-specific enzyme IIC component; hypothetical protein 2477533 1131248 lin2459 Listeria innocua Clip11262 hypothetical protein NP_471789.1 2476232 R 272626 CDS NP_471790.1 16801522 1131249 complement(2477688..2480471) 1 NC_003212.1 transmembrane protein 2480471 1131249 lin2460 Listeria innocua Clip11262 transmembrane protein NP_471790.1 2477688 R 272626 CDS NP_471791.1 16801523 1131250 complement(2480505..2480975) 1 NC_003212.1 hypothetical protein 2480975 1131250 lin2461 Listeria innocua Clip11262 hypothetical protein NP_471791.1 2480505 R 272626 CDS NP_471792.1 16801524 1131251 2481366..2482889 1 NC_003212.1 similar to amino acid antiporter (acid resistance); hypothetical protein 2482889 1131251 lin2462 Listeria innocua Clip11262 hypothetical protein NP_471792.1 2481366 D 272626 CDS NP_471793.1 16801525 1131252 2482902..2484296 1 NC_003212.1 similar to glutamate decarboxylase; hypothetical protein 2484296 1131252 lin2463 Listeria innocua Clip11262 hypothetical protein NP_471793.1 2482902 D 272626 CDS NP_471794.1 16801526 1131253 complement(2484305..2485819) 1 NC_003212.1 similar to S. pyogenes RofA regulatory protein; hypothetical protein 2485819 1131253 lin2464 Listeria innocua Clip11262 hypothetical protein NP_471794.1 2484305 R 272626 CDS NP_471795.1 16801527 1131257 complement(2492894..2493652) 1 NC_003212.1 similar to transcription regulator DeoR family; hypothetical protein 2493652 1131257 lin2465 Listeria innocua Clip11262 hypothetical protein NP_471795.1 2492894 R 272626 CDS NP_471796.1 16801528 1131258 complement(2493757..2495109) 1 NC_003212.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2495109 pgi 1131258 pgi Listeria innocua Clip11262 glucose-6-phosphate isomerase NP_471796.1 2493757 R 272626 CDS NP_471797.1 16801529 1131259 complement(2495212..2495619) 1 NC_003212.1 lin2467; hypothetical protein 2495619 1131259 lin2467 Listeria innocua Clip11262 hypothetical protein NP_471797.1 2495212 R 272626 CDS NP_471798.1 16801530 1131260 complement(2495769..2496122) 1 NC_003212.1 similar to Bacillus subtilis general stress protein 13 containing a ribosomal S1 protein domain; induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; general stress protein 13 2496122 1131260 lin2468 Listeria innocua Clip11262 general stress protein 13 NP_471798.1 2495769 R 272626 CDS NP_471799.1 16801531 1131261 2496276..2497442 1 NC_003212.1 similar to aminotransferase; hypothetical protein 2497442 1131261 lin2469 Listeria innocua Clip11262 hypothetical protein NP_471799.1 2496276 D 272626 CDS NP_471800.1 16801532 1131262 2497581..2498684 1 NC_003212.1 similar to putative ABC-transporter transmembrane subunit; hypothetical protein 2498684 1131262 lin2470 Listeria innocua Clip11262 hypothetical protein NP_471800.1 2497581 D 272626 CDS NP_471801.1 16801533 1131264 2498684..2499364 1 NC_003212.1 similar to ABC-transporter ATP binding proteins; hypothetical protein 2499364 1131264 lin2471 Listeria innocua Clip11262 hypothetical protein NP_471801.1 2498684 D 272626 CDS NP_471802.1 16801534 1131265 complement(2499407..2499721) 1 NC_003212.1 similar to phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB component; hypothetical protein 2499721 1131265 lin2472 Listeria innocua Clip11262 hypothetical protein NP_471802.1 2499407 R 272626 CDS NP_471803.1 16801535 1131266 2499965..2501326 1 NC_003212.1 similar to aspartate kinase; catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 2501326 1131266 lin2473 Listeria innocua Clip11262 aspartate kinase NP_471803.1 2499965 D 272626 CDS NP_471804.1 16801536 1131267 complement(2501371..2501775) 1 NC_003212.1 lin2474; hypothetical protein 2501775 1131267 lin2474 Listeria innocua Clip11262 hypothetical protein NP_471804.1 2501371 R 272626 CDS NP_471805.1 16801537 1131268 complement(2501844..2502428) 1 NC_003212.1 similar to peptidyl-prolyl cis-trans isomerase; hypothetical protein 2502428 1131268 lin2475 Listeria innocua Clip11262 hypothetical protein NP_471805.1 2501844 R 272626 CDS NP_471806.1 16801538 1131269 2502660..2503871 1 NC_003212.1 similar to multi-drug resistance efflux pump; hypothetical protein 2503871 1131269 lin2476 Listeria innocua Clip11262 hypothetical protein NP_471806.1 2502660 D 272626 CDS NP_471807.1 16801539 1131270 2504216..2506624 1 NC_003212.1 similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 2506624 1131270 lin2477 Listeria innocua Clip11262 monovalent cation/H+ antiporter subunit A NP_471807.1 2504216 D 272626 CDS NP_471808.1 16801540 1131272 2506611..2507033 1 NC_003212.1 similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit B 2507033 1131272 lin2478 Listeria innocua Clip11262 putative monovalent cation/H+ antiporter subunit B NP_471808.1 2506611 D 272626 CDS NP_471809.1 16801541 1131274 2507033..2507380 1 NC_003212.1 similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 2507380 1131274 lin2479 Listeria innocua Clip11262 putative monovalent cation/H+ antiporter subunit C NP_471809.1 2507033 D 272626 CDS NP_471810.1 16801542 1131276 2507373..2508857 1 NC_003212.1 similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 2508857 1131276 lin2480 Listeria innocua Clip11262 putative monovalent cation/H+ antiporter subunit D NP_471810.1 2507373 D 272626 CDS NP_471811.1 16801543 1131278 2508864..2509343 1 NC_003212.1 similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E 2509343 1131278 lin2481 Listeria innocua Clip11262 putative monovalent cation/H+ antiporter subunit E NP_471811.1 2508864 D 272626 CDS NP_471812.1 16801544 1131280 2509340..2509627 1 NC_003212.1 similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 2509627 1131280 lin2482 Listeria innocua Clip11262 putative monovalent cation/H+ antiporter subunit F NP_471812.1 2509340 D 272626 CDS NP_471813.1 16801545 1131282 2509611..2510204 1 NC_003212.1 similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G 2510204 1131282 lin2483 Listeria innocua Clip11262 putative monovalent cation/H+ antiporter subunit G NP_471813.1 2509611 D 272626 CDS NP_471814.1 16801546 1131283 complement(2510249..2510620) 1 NC_003212.1 similar to Bacillus subtilis YuxO protein; hypothetical protein 2510620 1131283 lin2484 Listeria innocua Clip11262 hypothetical protein NP_471814.1 2510249 R 272626 CDS NP_471815.1 16801547 1131285 2510748..2511221 1 NC_003212.1 similar to Bacillus subtilis YuiD protein; hypothetical protein 2511221 1131285 lin2485 Listeria innocua Clip11262 hypothetical protein NP_471815.1 2510748 D 272626 CDS NP_471816.1 16801548 1131286 complement(2511255..2512073) 1 NC_003212.1 similar to Bacillus subtilis YwqG protein; hypothetical protein 2512073 1131286 lin2486 Listeria innocua Clip11262 hypothetical protein NP_471816.1 2511255 R 272626 CDS NP_471817.1 16801549 1131287 complement(2512108..2512929) 1 NC_003212.1 hypothetical protein 2512929 1131287 lin2487 Listeria innocua Clip11262 hypothetical protein NP_471817.1 2512108 R 272626 CDS NP_471818.1 16801550 1131288 complement(2513013..2514224) 1 NC_003212.1 similar to NADH dehydrogenase; hypothetical protein 2514224 1131288 lin2488 Listeria innocua Clip11262 hypothetical protein NP_471818.1 2513013 R 272626 CDS NP_471819.1 16801551 1131289 2514675..2515670 1 NC_003212.1 similar to hypothetical thioredoxine reductase; hypothetical protein 2515670 1131289 lin2489 Listeria innocua Clip11262 hypothetical protein NP_471819.1 2514675 D 272626 CDS NP_471820.1 16801552 1131290 2515758..2516387 1 NC_003212.1 conserved hypothetical protein similar to Bacillus subtilis YhfK protein; hypothetical protein 2516387 1131290 lin2490 Listeria innocua Clip11262 hypothetical protein NP_471820.1 2515758 D 272626 CDS NP_471821.1 16801553 1131291 complement(2516433..2516666) 1 NC_003212.1 similar to Bacillus subtilis YuzB protein; hypothetical protein 2516666 1131291 lin2491 Listeria innocua Clip11262 hypothetical protein NP_471821.1 2516433 R 272626 CDS NP_471822.1 16801554 1131292 complement(2516688..2517014) 1 NC_003212.1 similar to Bacillus subtilis YuzD protein; hypothetical protein 2517014 1131292 lin2492 Listeria innocua Clip11262 hypothetical protein NP_471822.1 2516688 R 272626 CDS NP_471823.1 16801555 1131293 complement(2517255..2517452) 1 NC_003212.1 hypothetical protein 2517452 1131293 lin2493 Listeria innocua Clip11262 hypothetical protein NP_471823.1 2517255 R 272626 CDS NP_471824.1 16801556 1131295 2517344..2517718 1 NC_003212.1 hypothetical protein 2517718 1131295 lin2494 Listeria innocua Clip11262 hypothetical protein NP_471824.1 2517344 D 272626 CDS NP_471825.1 16801557 1131297 2518065..2520887 1 NC_003212.1 similar to internalin proteins, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 2520887 1131297 lin2495 Listeria innocua Clip11262 hypothetical protein NP_471825.1 2518065 D 272626 CDS NP_471826.1 16801558 1131298 2521061..2521297 1 NC_003212.1 similar to NifU protein; hypothetical protein 2521297 1131298 lin2496 Listeria innocua Clip11262 hypothetical protein NP_471826.1 2521061 D 272626 CDS NP_471827.1 16801559 1131299 2521412..2521912 1 NC_003212.1 low temperature requirement C protein 2521912 ltrC 1131299 ltrC Listeria innocua Clip11262 low temperature requirement C protein NP_471827.1 2521412 D 272626 CDS NP_471828.1 16801560 1131300 complement(2521936..2523246) 1 NC_003212.1 hypothetical protein 2523246 1131300 lin2498 Listeria innocua Clip11262 hypothetical protein NP_471828.1 2521936 R 272626 CDS NP_471829.1 16801561 1131301 complement(2523282..2523725) 1 NC_003212.1 similar to acetyltransferase; hypothetical protein 2523725 1131301 lin2499 Listeria innocua Clip11262 hypothetical protein NP_471829.1 2523282 R 272626 CDS NP_471830.1 16801562 1131302 complement(2523775..2524542) 1 NC_003212.1 similar to conserved hypothetical protein and to Bacillus subtilis YutF protein; hypothetical protein 2524542 1131302 lin2500 Listeria innocua Clip11262 hypothetical protein NP_471830.1 2523775 R 272626 CDS NP_471831.1 16801563 1131303 complement(2524562..2524837) 1 NC_003212.1 similar to Bacillus subtilis YutD protein; hypothetical protein 2524837 1131303 lin2501 Listeria innocua Clip11262 hypothetical protein NP_471831.1 2524562 R 272626 CDS NP_471832.1 16801564 1131304 complement(2524834..2526225) 1 NC_003212.1 similar to Bacillus subtilis YunD protein; hypothetical protein 2526225 1131304 lin2502 Listeria innocua Clip11262 hypothetical protein NP_471832.1 2524834 R 272626 CDS NP_471833.1 16801565 1131306 2526358..2527197 1 NC_003212.1 hypothetical protein 2527197 1131306 lin2503 Listeria innocua Clip11262 hypothetical protein NP_471833.1 2526358 D 272626 CDS NP_471834.1 16801566 1131308 2527198..2527563 1 NC_003212.1 lin2504; hypothetical protein 2527563 1131308 lin2504 Listeria innocua Clip11262 hypothetical protein NP_471834.1 2527198 D 272626 CDS NP_471835.1 16801567 1131309 complement(2527595..2528440) 1 NC_003212.1 similar to Bacillus subtilis YunF protein; hypothetical protein 2528440 1131309 lin2505 Listeria innocua Clip11262 hypothetical protein NP_471835.1 2527595 R 272626 CDS NP_471836.1 16801568 1131310 complement(2528811..2530205) 1 NC_003212.1 hypothetical protein 2530205 1131310 lin2506 Listeria innocua Clip11262 hypothetical protein NP_471836.1 2528811 R 272626 CDS NP_471837.1 16801569 1131311 complement(2530228..2530671) 1 NC_003212.1 hypothetical protein 2530671 1131311 lin2507 Listeria innocua Clip11262 hypothetical protein NP_471837.1 2530228 R 272626 CDS NP_471838.1 16801570 1131312 complement(2530668..2531894) 1 NC_003212.1 similar to aminotransferase; hypothetical protein 2531894 1131312 lin2508 Listeria innocua Clip11262 hypothetical protein NP_471838.1 2530668 R 272626 CDS NP_471839.1 16801571 1131314 complement(2531895..2533196) 1 NC_003212.1 similar to aminotransferase; hypothetical protein 2533196 1131314 lin2509 Listeria innocua Clip11262 hypothetical protein NP_471839.1 2531895 R 272626 CDS NP_471840.1 16801572 1131315 complement(2533215..2534000) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 2534000 1131315 lin2510 Listeria innocua Clip11262 hypothetical protein NP_471840.1 2533215 R 272626 CDS NP_471841.1 16801573 1131316 2534340..2535416 1 NC_003212.1 lin2511; hypothetical protein 2535416 1131316 lin2511 Listeria innocua Clip11262 hypothetical protein NP_471841.1 2534340 D 272626 CDS NP_471842.1 16801574 1131317 complement(2535457..2536287) 1 NC_003212.1 conserved lipoprotein (putative ABC transporter binding protein); hypothetical protein 2536287 1131317 lin2512 Listeria innocua Clip11262 hypothetical protein NP_471842.1 2535457 R 272626 CDS NP_471843.1 16801575 1131318 complement(2536353..2537027) 1 NC_003212.1 similar to ABC transporter, permease protein; hypothetical protein 2537027 1131318 lin2513 Listeria innocua Clip11262 hypothetical protein NP_471843.1 2536353 R 272626 CDS NP_471844.1 16801576 1131319 complement(2537024..2538046) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2538046 1131319 lin2514 Listeria innocua Clip11262 hypothetical protein NP_471844.1 2537024 R 272626 CDS NP_471845.1 16801577 1131321 complement(2538630..2539772) 1 NC_003212.1 similar to two-component sensor histidine kinase; hypothetical protein 2539772 1131321 lin2515 Listeria innocua Clip11262 hypothetical protein NP_471845.1 2538630 R 272626 CDS NP_471846.1 16801578 1131322 complement(2539762..2540457) 1 NC_003212.1 similar to two-component response regulator; hypothetical protein 2540457 1131322 lin2516 Listeria innocua Clip11262 hypothetical protein NP_471846.1 2539762 R 272626 CDS NP_471847.1 16801579 1131324 complement(2540533..2541408) 1 NC_003212.1 hypothetical protein 2541408 1131324 lin2517 Listeria innocua Clip11262 hypothetical protein NP_471847.1 2540533 R 272626 CDS NP_471848.1 16801580 1131325 complement(2541601..2541909) 1 NC_003212.1 similar to thioredoxin; hypothetical protein 2541909 1131325 lin2518 Listeria innocua Clip11262 hypothetical protein NP_471848.1 2541601 R 272626 CDS NP_471849.1 16801581 1131326 complement(2541970..2542347) 1 NC_003212.1 similar to glycine cleavage system protein H; part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 2542347 1131326 lin2519 Listeria innocua Clip11262 glycine cleavage system protein H NP_471849.1 2541970 R 272626 CDS NP_471850.1 16801582 1131327 complement(2542387..2542740) 1 NC_003212.1 hypothetical protein 2542740 1131327 lin2520 Listeria innocua Clip11262 hypothetical protein NP_471850.1 2542387 R 272626 CDS NP_471851.1 16801583 1131328 complement(2542895..2544070) 1 NC_003212.1 similar to cell division proteins RodA, FtsW; hypothetical protein 2544070 1131328 lin2521 Listeria innocua Clip11262 hypothetical protein NP_471851.1 2542895 R 272626 CDS NP_471852.1 16801584 1131329 complement(2544141..2545310) 1 NC_003212.1 similar to cell division proteins RodA, FtsW; hypothetical protein 2545310 1131329 lin2522 Listeria innocua Clip11262 hypothetical protein NP_471852.1 2544141 R 272626 CDS NP_471853.1 16801585 1131330 complement(2545451..2546242) 1 NC_003212.1 similar to Bacillus subtilis ferrichrome ABC transporter (ATP-binding protein) FhuC; hypothetical protein 2546242 1131330 lin2523 Listeria innocua Clip11262 hypothetical protein NP_471853.1 2545451 R 272626 CDS NP_471854.1 16801586 1131331 complement(2546239..2547249) 1 NC_003212.1 similar to Bacillus subtilis ferrichrome ABC transporter (permease) FhuG; hypothetical protein 2547249 1131331 lin2524 Listeria innocua Clip11262 hypothetical protein NP_471854.1 2546239 R 272626 CDS NP_471855.1 16801587 1131333 complement(2547249..2548220) 1 NC_003212.1 similar to Bacillus subtilis ferrichrome ABC transporter fhuD precursor (ferrichrome-binding protein); hypothetical protein 2548220 1131333 lin2525 Listeria innocua Clip11262 hypothetical protein NP_471855.1 2547249 R 272626 CDS NP_471856.1 16801588 1131335 2548376..2548540 1 NC_003212.1 lin2526; hypothetical protein 2548540 1131335 lin2526 Listeria innocua Clip11262 hypothetical protein NP_471856.1 2548376 D 272626 CDS NP_471857.1 16801589 1131336 2548673..2549431 1 NC_003212.1 similar to acetylesterase; hypothetical protein 2549431 1131336 lin2527 Listeria innocua Clip11262 hypothetical protein NP_471857.1 2548673 D 272626 CDS NP_471858.1 16801590 1131338 complement(2549470..2550873) 1 NC_003212.1 highly similar to glutamate decarboxylases; hypothetical protein 2550873 1131338 lin2528 Listeria innocua Clip11262 hypothetical protein NP_471858.1 2549470 R 272626 CDS NP_471859.1 16801591 1131339 2550999..2551307 1 NC_003212.1 similar to Bacillus subtilis YfhL protein; hypothetical protein 2551307 1131339 lin2529 Listeria innocua Clip11262 hypothetical protein NP_471859.1 2550999 D 272626 CDS NP_471860.1 16801592 1131342 complement(2551367..2552224) 1 NC_003212.1 similar to transcription antiterminator; hypothetical protein 2552224 1131342 lin2530 Listeria innocua Clip11262 hypothetical protein NP_471860.1 2551367 R 272626 CDS NP_471861.1 16801593 1131343 2552493..2552903 1 NC_003212.1 lin2531; hypothetical protein 2552903 1131343 lin2531 Listeria innocua Clip11262 hypothetical protein NP_471861.1 2552493 D 272626 CDS NP_471862.1 16801594 1131344 complement(2552922..2553434) 1 NC_003212.1 lin2532; hypothetical protein 2553434 1131344 lin2532 Listeria innocua Clip11262 hypothetical protein NP_471862.1 2552922 R 272626 CDS NP_471863.1 16801595 1131345 2553557..2553898 1 NC_003212.1 lin2533; hypothetical protein 2553898 1131345 lin2533 Listeria innocua Clip11262 hypothetical protein NP_471863.1 2553557 D 272626 CDS NP_471864.1 16801596 1131346 complement(2553931..2554314) 1 NC_003212.1 lin2534; hypothetical protein 2554314 1131346 lin2534 Listeria innocua Clip11262 hypothetical protein NP_471864.1 2553931 R 272626 CDS NP_471865.1 16801597 1131347 complement(2554369..2555265) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 2555265 1131347 lin2535 Listeria innocua Clip11262 hypothetical protein NP_471865.1 2554369 R 272626 CDS NP_471866.1 16801598 1131348 complement(2555306..2555875) 1 NC_003212.1 lin2536; hypothetical protein 2555875 1131348 lin2536 Listeria innocua Clip11262 hypothetical protein NP_471866.1 2555306 R 272626 CDS NP_471867.1 16801599 1131349 complement(2556522..2557574) 1 NC_003212.1 similar to internalin proteins; hypothetical protein 2557574 1131349 lin2537 Listeria innocua Clip11262 hypothetical protein NP_471867.1 2556522 R 272626 CDS NP_471868.1 16801600 1131350 complement(2557627..2561559) 1 NC_003212.1 similar to glycosidase; hypothetical protein 2561559 1131350 lin2538 Listeria innocua Clip11262 hypothetical protein NP_471868.1 2557627 R 272626 CDS NP_471869.1 16801601 1131351 complement(2561574..2562518) 1 NC_003212.1 similar to internalin; hypothetical protein 2562518 1131351 lin2539 Listeria innocua Clip11262 hypothetical protein NP_471869.1 2561574 R 272626 CDS NP_471870.1 16801602 1131352 complement(2562577..2565849) 1 NC_003212.1 similar to glycosidase; hypothetical protein 2565849 1131352 lin2540 Listeria innocua Clip11262 hypothetical protein NP_471870.1 2562577 R 272626 CDS NP_471871.1 16801603 1131353 2566232..2567140 1 NC_003212.1 similar to transcription regulator; hypothetical protein 2567140 1131353 lin2541 Listeria innocua Clip11262 hypothetical protein NP_471871.1 2566232 D 272626 CDS NP_471872.1 16801604 1131354 complement(2567195..2567659) 1 NC_003212.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2567659 smpB 1131354 smpB Listeria innocua Clip11262 SsrA-binding protein NP_471872.1 2567195 R 272626 CDS NP_471873.1 16801605 1131355 complement(2567675..2570056) 1 NC_003212.1 similar to exoribonuclease RNase-R; hypothetical protein 2570056 1131355 lin2543 Listeria innocua Clip11262 hypothetical protein NP_471873.1 2567675 R 272626 CDS NP_471874.1 16801606 1131356 complement(2570090..2570836) 1 NC_003212.1 similar to carboxylesterase; hypothetical protein 2570836 1131356 lin2544 Listeria innocua Clip11262 hypothetical protein NP_471874.1 2570090 R 272626 CDS NP_471875.1 16801607 1131357 complement(2571095..2571328) 1 NC_003212.1 similar to preprotein translocase subunit SecG; preprotein translocase subunit SecG 2571328 secG 1131357 secG Listeria innocua Clip11262 preprotein translocase subunit SecG NP_471875.1 2571095 R 272626 CDS NP_471876.1 16801608 1131358 complement(2571418..2572161) 1 NC_003212.1 similar to carboxylesterase; hypothetical protein 2572161 1131358 lin2546 Listeria innocua Clip11262 hypothetical protein NP_471876.1 2571418 R 272626 CDS NP_471877.1 16801609 1131359 complement(2572344..2573063) 1 NC_003212.1 similar to lipolytic enzyme; hypothetical protein 2573063 1131359 lin2547 Listeria innocua Clip11262 hypothetical protein NP_471877.1 2572344 R 272626 CDS NP_471878.1 16801610 1131360 complement(2573195..2573368) 1 NC_003212.1 lin2548; hypothetical protein 2573368 1131360 lin2548 Listeria innocua Clip11262 hypothetical protein NP_471878.1 2573195 R 272626 CDS NP_471879.1 16801611 1131361 complement(2573471..2574763) 1 NC_003212.1 highly similar to enolase; enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 2574763 eno 1131361 eno Listeria innocua Clip11262 phosphopyruvate hydratase NP_471879.1 2573471 R 272626 CDS NP_471880.1 16801612 1131362 complement(2574898..2576430) 1 NC_003212.1 highly similar to phosphoglycerate mutase; catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 2576430 1131362 lin2550 Listeria innocua Clip11262 phosphoglyceromutase NP_471880.1 2574898 R 272626 CDS NP_471881.1 16801613 1131363 complement(2576432..2577187) 1 NC_003212.1 highly similar to triose phosphate isomerase; Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 2577187 tpiA 1131363 tpiA Listeria innocua Clip11262 triosephosphate isomerase NP_471881.1 2576432 R 272626 CDS NP_471882.1 16801614 1131365 complement(2577233..2578423) 1 NC_003212.1 highly similar to phosphoglycerate kinase; Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2578423 pgk 1131365 pgk Listeria innocua Clip11262 phosphoglycerate kinase NP_471882.1 2577233 R 272626 CDS NP_471883.1 16801615 1131366 complement(2578558..2579568) 1 NC_003212.1 highly similar to glyceraldehyde 3-phosphate dehydrogenase; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 2579568 1131366 lin2553 Listeria innocua Clip11262 glyceraldehyde-3-phosphate dehydrogenase NP_471883.1 2578558 R 272626 CDS NP_471884.1 16801616 1131367 complement(2579601..2580647) 1 NC_003212.1 similar to Bacillus subtilis CggR hypothetical transcriptional regulator; hypothetical protein 2580647 1131367 lin2554 Listeria innocua Clip11262 hypothetical protein NP_471884.1 2579601 R 272626 CDS NP_471885.1 16801617 1131368 complement(2581090..2582433) 1 NC_003212.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 2582433 sigL 1131368 sigL Listeria innocua Clip11262 RNA polymerase factor sigma-54 NP_471885.1 2581090 R 272626 CDS NP_471886.1 16801618 1131369 complement(2582584..2583510) 1 NC_003212.1 similar to dipeptidases; hypothetical protein 2583510 1131369 lin2556 Listeria innocua Clip11262 hypothetical protein NP_471886.1 2582584 R 272626 CDS NP_471887.1 16801619 1131370 complement(2583589..2585823) 1 NC_003212.1 similar to transport protein; hypothetical protein 2585823 1131370 lin2557 Listeria innocua Clip11262 hypothetical protein NP_471887.1 2583589 R 272626 CDS NP_471888.1 16801620 1131371 complement(2585830..2586438) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 2586438 1131371 lin2558 Listeria innocua Clip11262 hypothetical protein NP_471888.1 2585830 R 272626 CDS NP_471889.1 16801621 1131373 complement(2586455..2586853) 1 NC_003212.1 lin2559; hypothetical protein 2586853 1131373 lin2559 Listeria innocua Clip11262 hypothetical protein NP_471889.1 2586455 R 272626 CDS NP_471890.1 16801622 1131374 2587044..2587379 1 NC_003212.1 lin2560; hypothetical protein 2587379 1131374 lin2560 Listeria innocua Clip11262 hypothetical protein NP_471890.1 2587044 D 272626 CDS NP_471891.1 16801623 1131375 2587880..2588086 1 NC_003212.1 hypothetical protein 2588086 1131375 lin2561 Listeria innocua Clip11262 hypothetical protein NP_471891.1 2587880 D 272626 CDS NP_471892.1 16801624 1131376 complement(2588161..2589057) 1 NC_003212.1 hypothetical protein 2589057 1131376 lin2562 Listeria innocua Clip11262 hypothetical protein NP_471892.1 2588161 R 272626 CDS NP_471893.1 16801625 1131377 complement(2589420..2590370) 1 NC_003212.1 similar to N-acetylmuramoyl-L-alanine amidase (N-terminal part) and to L-alanoyl-D-glutamate peptidase (C-terminal part); hypothetical protein 2590370 1131377 lin2563 Listeria innocua Clip11262 hypothetical protein NP_471893.1 2589420 R 272626 CDS NP_471894.1 16801626 1131378 complement(2591144..2591485) 1 NC_003212.1 lin2564; hypothetical protein 2591485 1131378 lin2564 Listeria innocua Clip11262 hypothetical protein NP_471894.1 2591144 R 272626 CDS NP_471895.1 16801627 1131379 complement(2591482..2592603) 1 NC_003212.1 similar to protein gp20 [Bacteriophage A118]; hypothetical protein 2592603 1131379 lin2565 Listeria innocua Clip11262 hypothetical protein NP_471895.1 2591482 R 272626 CDS NP_471896.1 16801628 1131381 complement(2592600..2594741) 1 NC_003212.1 similar to endopeptidase [bacteriophage bIL285]; hypothetical protein 2594741 1131381 lin2566 Listeria innocua Clip11262 hypothetical protein NP_471896.1 2592600 R 272626 CDS NP_471897.1 16801629 1131383 complement(2594723..2595463) 1 NC_003212.1 similar to Orf53 [bacteriophage bIL285]; hypothetical protein 2595463 1131383 lin2567 Listeria innocua Clip11262 hypothetical protein NP_471897.1 2594723 R 272626 CDS NP_471898.1 16801630 1131385 complement(2595460..2598741) 1 NC_003212.1 similar to tail protein [bacteriophage bIL285]; hypothetical protein 2598741 1131385 lin2568 Listeria innocua Clip11262 hypothetical protein NP_471898.1 2595460 R 272626 CDS NP_471899.1 16801631 1131386 complement(2598756..2598890) 1 NC_003212.1 similar to Lactococcus lactis prophage pi2 protein 41; hypothetical protein 2598890 1131386 lin2569 Listeria innocua Clip11262 hypothetical protein NP_471899.1 2598756 R 272626 CDS NP_471900.1 16801632 1131387 complement(2598965..2599321) 1 NC_003212.1 similar to Orf51 [bacteriophage bIL285]; hypothetical protein 2599321 1131387 lin2570 Listeria innocua Clip11262 hypothetical protein NP_471900.1 2598965 R 272626 CDS NP_471901.1 16801633 1131388 complement(2599365..2599943) 1 NC_003212.1 similar to Orf50 [bacteriophage bIL285]; hypothetical protein 2599943 1131388 lin2571 Listeria innocua Clip11262 hypothetical protein NP_471901.1 2599365 R 272626 CDS NP_471902.1 16801634 1131389 complement(2599944..2600267) 1 NC_003212.1 similar to Orf49 [bacteriophage bIL285]; hypothetical protein 2600267 1131389 lin2572 Listeria innocua Clip11262 hypothetical protein NP_471902.1 2599944 R 272626 CDS NP_471903.1 16801635 1131391 complement(2600264..2600617) 1 NC_003212.1 similar to Orf48 [bacteriophage bIL285]; hypothetical protein 2600617 1131391 lin2573 Listeria innocua Clip11262 hypothetical protein NP_471903.1 2600264 R 272626 CDS NP_471904.1 16801636 1131393 complement(2600624..2600929) 1 NC_003212.1 similar to Orf47 [bacteriophage bIL285]; hypothetical protein 2600929 1131393 lin2574 Listeria innocua Clip11262 hypothetical protein NP_471904.1 2600624 R 272626 CDS NP_471905.1 16801637 1131395 complement(2600916..2601203) 1 NC_003212.1 similar to Orf46 [bacteriophage bIL285]; hypothetical protein 2601203 1131395 lin2575 Listeria innocua Clip11262 hypothetical protein NP_471905.1 2600916 R 272626 CDS NP_471906.1 16801638 1131397 complement(2601387..2602574) 1 NC_003212.1 similar to capsid protein [bacteriophage bIL285]; hypothetical protein 2602574 1131397 lin2576 Listeria innocua Clip11262 hypothetical protein NP_471906.1 2601387 R 272626 CDS NP_471907.1 16801639 1131398 complement(2602565..2603149) 1 NC_003212.1 similar to protease [bacteriophage bIL285]; hypothetical protein 2603149 1131398 lin2577 Listeria innocua Clip11262 hypothetical protein NP_471907.1 2602565 R 272626 CDS NP_471908.1 16801640 1131400 complement(2603146..2604327) 1 NC_003212.1 similar to portal protein [bacteriophage bIL285]; hypothetical protein 2604327 1131400 lin2578 Listeria innocua Clip11262 hypothetical protein NP_471908.1 2603146 R 272626 CDS NP_471909.1 16801641 1131402 complement(2604341..2606092) 1 NC_003212.1 similar to terminase [bacteriophage bIL285]; hypothetical protein 2606092 1131402 lin2579 Listeria innocua Clip11262 hypothetical protein NP_471909.1 2604341 R 272626 CDS NP_471910.1 16801642 1131403 complement(2606089..2606463) 1 NC_003212.1 similar to bacteriophage protein; hypothetical protein 2606463 1131403 lin2580 Listeria innocua Clip11262 hypothetical protein NP_471910.1 2606089 R 272626 CDS NP_471911.1 16801643 1131404 complement(2606504..2606878) 1 NC_003212.1 similar to bacteriophage protein; hypothetical protein 2606878 1131404 lin2581 Listeria innocua Clip11262 hypothetical protein NP_471911.1 2606504 R 272626 CDS NP_471912.1 16801644 1131405 complement(2607196..2607939) 1 NC_003212.1 lin2582; hypothetical protein 2607939 1131405 lin2582 Listeria innocua Clip11262 hypothetical protein NP_471912.1 2607196 R 272626 CDS NP_471913.1 16801645 1131406 complement(2608037..2608462) 1 NC_003212.1 lin2583; hypothetical protein 2608462 1131406 lin2583 Listeria innocua Clip11262 hypothetical protein NP_471913.1 2608037 R 272626 CDS NP_471914.1 16801646 1131407 complement(2608475..2608702) 1 NC_003212.1 lin2584; hypothetical protein 2608702 1131407 lin2584 Listeria innocua Clip11262 hypothetical protein NP_471914.1 2608475 R 272626 CDS NP_471915.1 16801647 1131408 complement(2608919..2609563) 1 NC_003212.1 lin2585; hypothetical protein 2609563 1131408 lin2585 Listeria innocua Clip11262 hypothetical protein NP_471915.1 2608919 R 272626 CDS NP_471916.1 16801648 1131409 complement(2609566..2609880) 1 NC_003212.1 similar to bacteriophage protein; hypothetical protein 2609880 1131409 lin2586 Listeria innocua Clip11262 hypothetical protein NP_471916.1 2609566 R 272626 CDS NP_471917.1 16801649 1131411 complement(2610169..2612442) 1 NC_003212.1 similar to bacteriophage protein; hypothetical protein 2612442 1131411 lin2587 Listeria innocua Clip11262 hypothetical protein NP_471917.1 2610169 R 272626 CDS NP_471918.1 16801650 1131412 complement(2612465..2612947) 1 NC_003212.1 similar to bacteriophage protein; hypothetical protein 2612947 1131412 lin2588 Listeria innocua Clip11262 hypothetical protein NP_471918.1 2612465 R 272626 CDS NP_471919.1 16801651 1131413 complement(2612970..2614226) 1 NC_003212.1 similar to DEAH-family helicase; hypothetical protein 2614226 1131413 lin2589 Listeria innocua Clip11262 hypothetical protein NP_471919.1 2612970 R 272626 CDS NP_471920.1 16801652 1131414 complement(2614290..2614979) 1 NC_003212.1 similar to bacteriophage protein; hypothetical protein 2614979 1131414 lin2590 Listeria innocua Clip11262 hypothetical protein NP_471920.1 2614290 R 272626 CDS NP_471921.1 16801653 1131415 complement(2614992..2615471) 1 NC_003212.1 similar to bacteriophage protein; hypothetical protein 2615471 1131415 lin2591 Listeria innocua Clip11262 hypothetical protein NP_471921.1 2614992 R 272626 CDS NP_471922.1 16801654 1131416 complement(2615853..2616026) 1 NC_003212.1 lin2592; hypothetical protein 2616026 1131416 lin2592 Listeria innocua Clip11262 hypothetical protein NP_471922.1 2615853 R 272626 CDS NP_471923.1 16801655 1131417 complement(2616023..2616361) 1 NC_003212.1 hypothetical protein 2616361 1131417 lin2593 Listeria innocua Clip11262 hypothetical protein NP_471923.1 2616023 R 272626 CDS NP_471924.1 16801656 1131419 complement(2616494..2616715) 1 NC_003212.1 lin2594; hypothetical protein 2616715 1131419 lin2594 Listeria innocua Clip11262 hypothetical protein NP_471924.1 2616494 R 272626 CDS NP_471925.1 16801657 1131420 complement(2616715..2616900) 1 NC_003212.1 lin2595; hypothetical protein 2616900 1131420 lin2595 Listeria innocua Clip11262 hypothetical protein NP_471925.1 2616715 R 272626 CDS NP_471926.1 16801658 1131422 complement(2617103..2617618) 1 NC_003212.1 lin2596; hypothetical protein 2617618 1131422 lin2596 Listeria innocua Clip11262 hypothetical protein NP_471926.1 2617103 R 272626 CDS NP_471927.1 16801659 1131423 complement(2617817..2618110) 1 NC_003212.1 lin2597; hypothetical protein 2618110 1131423 lin2597 Listeria innocua Clip11262 hypothetical protein NP_471927.1 2617817 R 272626 CDS NP_471928.1 16801660 1131424 complement(2618107..2618295) 1 NC_003212.1 lin2598; hypothetical protein 2618295 1131424 lin2598 Listeria innocua Clip11262 hypothetical protein NP_471928.1 2618107 R 272626 CDS NP_471929.1 16801661 1131426 complement(2618288..2618686) 1 NC_003212.1 lin2599; hypothetical protein 2618686 1131426 lin2599 Listeria innocua Clip11262 hypothetical protein NP_471929.1 2618288 R 272626 CDS NP_471930.1 16801662 1131428 complement(2618683..2619363) 1 NC_003212.1 lin2600; hypothetical protein 2619363 1131428 lin2600 Listeria innocua Clip11262 hypothetical protein NP_471930.1 2618683 R 272626 CDS NP_471931.1 16801663 1131430 complement(2619376..2620320) 1 NC_003212.1 similar to bacteriophage integrase; hypothetical protein 2620320 1131430 lin2601 Listeria innocua Clip11262 hypothetical protein NP_471931.1 2619376 R 272626 CDS NP_471932.1 16801664 1131431 complement(2620331..2621044) 1 NC_003212.1 similar to phage protein; hypothetical protein 2621044 1131431 lin2602 Listeria innocua Clip11262 hypothetical protein NP_471932.1 2620331 R 272626 CDS NP_471933.1 16801665 1131432 complement(2621065..2621352) 1 NC_003212.1 lin2603; hypothetical protein 2621352 1131432 lin2603 Listeria innocua Clip11262 hypothetical protein NP_471933.1 2621065 R 272626 CDS NP_471934.1 16801666 1131433 complement(2622064..2622306) 1 NC_003212.1 lin2604; hypothetical protein 2622306 1131433 lin2604 Listeria innocua Clip11262 hypothetical protein NP_471934.1 2622064 R 272626 CDS NP_471935.1 16801667 1131434 complement(2622328..2622519) 1 NC_003212.1 lin2605; hypothetical protein 2622519 1131434 lin2605 Listeria innocua Clip11262 hypothetical protein NP_471935.1 2622328 R 272626 CDS NP_471936.1 16801668 1131435 2622586..2622789 1 NC_003212.1 lin2606; hypothetical protein 2622789 1131435 lin2606 Listeria innocua Clip11262 hypothetical protein NP_471936.1 2622586 D 272626 CDS NP_471937.1 16801669 1131436 2623190..2623513 1 NC_003212.1 similar to a putative repressor protein [Bacteriophage A118]; hypothetical protein 2623513 1131436 lin2607 Listeria innocua Clip11262 hypothetical protein NP_471937.1 2623190 D 272626 CDS NP_471938.1 16801670 1131437 2623530..2623982 1 NC_003212.1 similar to protein gp35 from Bacteriophage A118; hypothetical protein 2623982 1131437 lin2608 Listeria innocua Clip11262 hypothetical protein NP_471938.1 2623530 D 272626 CDS NP_471939.1 16801671 1131438 2624033..2624521 1 NC_003212.1 lin2609; hypothetical protein 2624521 1131438 lin2609 Listeria innocua Clip11262 hypothetical protein NP_471939.1 2624033 D 272626 CDS NP_471940.1 16801672 1131439 2624653..2625807 1 NC_003212.1 similar to integrases; hypothetical protein 2625807 1131439 lin2610 Listeria innocua Clip11262 hypothetical protein NP_471940.1 2624653 D 272626 CDS NP_471941.1 16801673 1131440 complement(2626101..2627537) 1 NC_003212.1 similar to chitinase and chitin binding protein; hypothetical protein 2627537 1131440 lin2611 Listeria innocua Clip11262 hypothetical protein NP_471941.1 2626101 R 272626 CDS NP_471942.1 16801674 1131441 2627695..2628291 1 NC_003212.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2628291 clpP 1131441 clpP Listeria innocua Clip11262 ATP-dependent Clp protease proteolytic subunit NP_471942.1 2627695 D 272626 CDS NP_471943.1 16801675 1131442 complement(2628342..2629733) 1 NC_003212.1 similar to amino acid transporter; hypothetical protein 2629733 1131442 lin2613 Listeria innocua Clip11262 hypothetical protein NP_471943.1 2628342 R 272626 CDS NP_471944.1 16801676 1131443 complement(2629973..2630989) 1 NC_003212.1 similar to NADH oxidase; catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds; NADPH dehydrogenase NamA 2630989 1131443 lin2614 Listeria innocua Clip11262 NADPH dehydrogenase NamA NP_471944.1 2629973 R 272626 CDS NP_471945.1 16801677 1131444 complement(2631015..2631986) 1 NC_003212.1 hypothetical protein 2631986 1131444 lin2615 Listeria innocua Clip11262 hypothetical protein NP_471945.1 2631015 R 272626 CDS NP_471946.1 16801678 1131445 complement(2631994..2632962) 1 NC_003212.1 hypothetical protein 2632962 1131445 lin2616 Listeria innocua Clip11262 hypothetical protein NP_471946.1 2631994 R 272626 CDS NP_471947.1 16801679 1131447 complement(2632964..2633839) 1 NC_003212.1 hypothetical protein 2633839 1131447 lin2617 Listeria innocua Clip11262 hypothetical protein NP_471947.1 2632964 R 272626 CDS NP_471948.1 16801680 1131449 complement(2633948..2635678) 1 NC_003212.1 similar to phosphomannomutase and phosphoglucomutase; hypothetical protein 2635678 1131449 lin2618 Listeria innocua Clip11262 hypothetical protein NP_471948.1 2633948 R 272626 CDS NP_471949.1 16801681 1131450 complement(2635723..2636784) 1 NC_003212.1 similar to aldose 1-epimerase (mutarotase); hypothetical protein 2636784 1131450 lin2619 Listeria innocua Clip11262 hypothetical protein NP_471949.1 2635723 R 272626 CDS NP_471950.1 16801682 1131451 complement(2636800..2637786) 1 NC_003212.1 UDP-glucose 4-epimerase 2637786 galE 1131451 galE Listeria innocua Clip11262 UDP-glucose 4-epimerase NP_471950.1 2636800 R 272626 CDS NP_471951.1 16801683 1131452 complement(2637899..2638858) 1 NC_003212.1 thioredoxin reductase 2638858 trxB 1131452 trxB Listeria innocua Clip11262 thioredoxin reductase NP_471951.1 2637899 R 272626 CDS NP_471952.1 16801684 1131453 complement(2638936..2640411) 1 NC_003212.1 lin2622; hypothetical protein 2640411 1131453 lin2622 Listeria innocua Clip11262 hypothetical protein NP_471952.1 2638936 R 272626 CDS NP_471953.1 16801685 1131454 complement(2640496..2640993) 1 NC_003212.1 similar to acetyltransferase; hypothetical protein 2640993 1131454 lin2623 Listeria innocua Clip11262 hypothetical protein NP_471953.1 2640496 R 272626 CDS NP_471954.1 16801686 1131455 complement(2640997..2641650) 1 NC_003212.1 similar to Bacillus subtilis P-Ser-HPr phosphatase; hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation; pyrophosphatase PpaX 2641650 1131455 lin2624 Listeria innocua Clip11262 pyrophosphatase PpaX NP_471954.1 2640997 R 272626 CDS NP_471955.1 16801687 1131457 complement(2641693..2642526) 1 NC_003212.1 highly similar to prolipoprotein diacylglyceryl transferase; transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2642526 1131457 lin2625 Listeria innocua Clip11262 prolipoprotein diacylglyceryl transferase NP_471955.1 2641693 R 272626 CDS NP_471956.1 16801688 1131458 complement(2642618..2643556) 1 NC_003212.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 2643556 1131458 lin2626 Listeria innocua Clip11262 HPr kinase/phosphorylase NP_471956.1 2642618 R 272626 CDS NP_471957.1 16801689 1131459 complement(2643743..2644096) 1 NC_003212.1 similar to Bacillus subtilis YvlD protein; hypothetical protein 2644096 1131459 lin2627 Listeria innocua Clip11262 hypothetical protein NP_471957.1 2643743 R 272626 CDS NP_471958.1 16801690 1131460 complement(2644105..2644305) 1 NC_003212.1 similar to Bacillus subtilis yvlC protein; hypothetical protein 2644305 1131460 lin2628 Listeria innocua Clip11262 hypothetical protein NP_471958.1 2644105 R 272626 CDS NP_471959.1 16801691 1131462 complement(2644329..2645540) 1 NC_003212.1 lin2629; hypothetical protein 2645540 1131462 lin2629 Listeria innocua Clip11262 hypothetical protein NP_471959.1 2644329 R 272626 CDS NP_471960.1 16801692 1131463 complement(2645608..2646858) 1 NC_003212.1 similar to Bacillus subtilis YvlB protein; hypothetical protein 2646858 1131463 lin2630 Listeria innocua Clip11262 hypothetical protein NP_471960.1 2645608 R 272626 CDS NP_471961.1 16801693 1131464 complement(2647067..2649937) 1 NC_003212.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 2649937 uvrA 1131464 uvrA Listeria innocua Clip11262 excinuclease ABC subunit A NP_471961.1 2647067 R 272626 CDS NP_471962.1 16801694 1131465 complement(2649945..2651921) 1 NC_003212.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2651921 uvrB 1131465 uvrB Listeria innocua Clip11262 excinuclease ABC subunit B NP_471962.1 2649945 R 272626 CDS NP_471963.1 16801695 1131467 complement(2652169..2652408) 1 NC_003212.1 similar to Bacillus subtilis CsbA protein; hypothetical protein 2652408 1131467 lin2633 Listeria innocua Clip11262 hypothetical protein NP_471963.1 2652169 R 272626 CDS NP_471964.1 16801696 1131468 complement(2652430..2653077) 1 NC_003212.1 lin2634; hypothetical protein 2653077 1131468 lin2634 Listeria innocua Clip11262 hypothetical protein NP_471964.1 2652430 R 272626 CDS NP_471965.1 16801697 1131469 complement(2653099..2653485) 1 NC_003212.1 lin2635; hypothetical protein 2653485 1131469 lin2635 Listeria innocua Clip11262 hypothetical protein NP_471965.1 2653099 R 272626 CDS NP_471966.1 16801698 1131470 complement(2653592..2653897) 1 NC_003212.1 similar to transcription regulator ArsR family; hypothetical protein 2653897 1131470 lin2636 Listeria innocua Clip11262 hypothetical protein NP_471966.1 2653592 R 272626 CDS NP_471967.1 16801699 1131471 complement(2654168..2654827) 1 NC_003212.1 similar to negative regulator of phosphate regulon; hypothetical protein 2654827 1131471 lin2637 Listeria innocua Clip11262 hypothetical protein NP_471967.1 2654168 R 272626 CDS NP_471968.1 16801700 1131472 complement(2654840..2655619) 1 NC_003212.1 similar to phosphate ABC transporter (ATP-binding protein); ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2655619 1131472 lin2638 Listeria innocua Clip11262 phosphate transporter ATP-binding protein NP_471968.1 2654840 R 272626 CDS NP_471969.1 16801701 1131473 complement(2655634..2656449) 1 NC_003212.1 similar to phosphate ABC transporter (ATP-binding protein); ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2656449 1131473 lin2639 Listeria innocua Clip11262 phosphate transporter ATP-binding protein NP_471969.1 2655634 R 272626 CDS NP_471970.1 16801702 1131474 complement(2656477..2657361) 1 NC_003212.1 similar to phosphate ABC transporter (permease protein); hypothetical protein 2657361 1131474 lin2640 Listeria innocua Clip11262 hypothetical protein NP_471970.1 2656477 R 272626 CDS NP_471971.1 16801703 1131475 complement(2657358..2658281) 1 NC_003212.1 similar to phosphate ABC transporter (permease protein); hypothetical protein 2658281 1131475 lin2641 Listeria innocua Clip11262 hypothetical protein NP_471971.1 2657358 R 272626 CDS NP_471972.1 16801704 1131477 complement(2658375..2659283) 1 NC_003212.1 similar to phosphate ABC transporter (binding protein); hypothetical protein 2659283 1131477 lin2642 Listeria innocua Clip11262 hypothetical protein NP_471972.1 2658375 R 272626 CDS NP_471973.1 16801705 1131478 complement(2659539..2661314) 1 NC_003212.1 two-component sensor histidine kinase 2661314 phoR 1131478 phoR Listeria innocua Clip11262 two-component sensor histidine kinase NP_471973.1 2659539 R 272626 CDS NP_471974.1 16801706 1131479 complement(2661314..2662024) 1 NC_003212.1 two-component response phosphate regulator 2662024 phoP 1131479 phoP Listeria innocua Clip11262 two-component response phosphate regulator NP_471974.1 2661314 R 272626 CDS NP_471975.1 16801707 1131481 complement(2662165..2663340) 1 NC_003212.1 lin2645; hypothetical protein 2663340 1131481 lin2645 Listeria innocua Clip11262 hypothetical protein NP_471975.1 2662165 R 272626 CDS NP_471976.1 16801708 1131482 complement(2663371..2664819) 1 NC_003212.1 similar to cardiolipin synthase; hypothetical protein 2664819 1131482 lin2646 Listeria innocua Clip11262 hypothetical protein NP_471976.1 2663371 R 272626 CDS NP_471977.1 16801709 1131483 complement(2664941..2666254) 1 NC_003212.1 similar to cell wall binding proteins; hypothetical protein 2666254 1131483 lin2647 Listeria innocua Clip11262 hypothetical protein NP_471977.1 2664941 R 272626 CDS NP_471978.1 16801710 1131484 complement(2666375..2667571) 1 NC_003212.1 peptidoglycan lytic protein P45 2667571 spl 1131484 spl Listeria innocua Clip11262 peptidoglycan lytic protein P45 NP_471978.1 2666375 R 272626 CDS NP_471979.1 16801711 1131485 complement(2667647..2668531) 1 NC_003212.1 highly similar to cell-division protein FtsX; hypothetical protein 2668531 1131485 lin2649 Listeria innocua Clip11262 hypothetical protein NP_471979.1 2667647 R 272626 CDS NP_471980.1 16801712 1131486 complement(2668521..2669207) 1 NC_003212.1 highly similar to the cell-division ATP-binding protein FtsE; hypothetical protein 2669207 1131486 lin2650 Listeria innocua Clip11262 hypothetical protein NP_471980.1 2668521 R 272626 CDS NP_471981.1 16801713 1131487 complement(2669712..2670575) 1 NC_003212.1 hypothetical protein 2670575 1131487 lin2652 Listeria innocua Clip11262 hypothetical protein NP_471981.1 2669712 R 272626 CDS NP_471982.1 16801714 1131488 complement(2670581..2671564) 1 NC_003212.1 highly similar to peptide chain release factor 2; recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 2671564 prfB 1131488 prfB Listeria innocua Clip11262 peptide chain release factor 2 NP_471982.1 2670581 R 272626 CDS NP_471983.1 16801715 1131490 complement(2671767..2674280) 1 NC_003212.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2674280 secA 1131490 secA Listeria innocua Clip11262 preprotein translocase subunit SecA NP_471983.1 2671767 R 272626 CDS NP_471984.1 16801716 1131491 complement(2674510..2675073) 1 NC_003212.1 similar to conserved hypothetical proteins like to Bacillus subtilis YvyD protein; hypothetical protein 2675073 1131491 lin2655 Listeria innocua Clip11262 hypothetical protein NP_471984.1 2674510 R 272626 CDS NP_471985.1 16801717 1131492 complement(2675266..2675922) 1 NC_003212.1 similar to late competence protein comFC; hypothetical protein 2675922 1131492 lin2656 Listeria innocua Clip11262 hypothetical protein NP_471985.1 2675266 R 272626 CDS NP_471986.1 16801718 1131493 complement(2675915..2677234) 1 NC_003212.1 similar to late competence protein comFA; hypothetical protein 2677234 1131493 lin2657 Listeria innocua Clip11262 hypothetical protein NP_471986.1 2675915 R 272626 CDS NP_471987.1 16801719 1131495 complement(2677431..2678282) 1 NC_003212.1 similar to Bacillus subtilis YviA (DegV) protein; hypothetical protein 2678282 1131495 lin2658 Listeria innocua Clip11262 hypothetical protein NP_471987.1 2677431 R 272626 CDS NP_471988.1 16801720 1131496 complement(2678303..2678989) 1 NC_003212.1 similar to Bacillus subtilis two-component response regulator DegU; hypothetical protein 2678989 1131496 lin2659 Listeria innocua Clip11262 hypothetical protein NP_471988.1 2678303 R 272626 CDS NP_471989.1 16801721 1131497 2679373..2680008 1 NC_003212.1 hypothetical protein 2680008 1131497 lin2660 Listeria innocua Clip11262 hypothetical protein NP_471989.1 2679373 D 272626 CDS NP_471990.1 16801722 1131499 2680010..2680555 1 NC_003212.1 lin2661; hypothetical protein 2680555 1131499 lin2661 Listeria innocua Clip11262 hypothetical protein NP_471990.1 2680010 D 272626 CDS NP_471991.1 16801723 1131500 2680730..2681779 1 NC_003212.1 similar to Bacillus subtilis putative transcriptional regulator LytR; hypothetical protein 2681779 1131500 lin2662 Listeria innocua Clip11262 hypothetical protein NP_471991.1 2680730 D 272626 CDS NP_471992.1 16801724 1131501 complement(2681817..2682869) 1 NC_003212.1 similar to Bacillus subtilis TagO teichoic acid linkage unit synthesis protein; hypothetical protein 2682869 1131501 lin2663 Listeria innocua Clip11262 hypothetical protein NP_471992.1 2681817 R 272626 CDS NP_471993.1 16801725 1131502 complement(2682877..2684001) 1 NC_003212.1 similar to Bacillus subtilis O-succinylbenzoate-CoA synthase (MenC); hypothetical protein 2684001 1131502 lin2664 Listeria innocua Clip11262 hypothetical protein NP_471993.1 2682877 R 272626 CDS NP_471994.1 16801726 1131504 complement(2684003..2684737) 1 NC_003212.1 similar to Bacillus subtilis TagA protein involved in polyglycerol phosphate biosynthesis; hypothetical protein 2684737 1131504 lin2665 Listeria innocua Clip11262 hypothetical protein NP_471994.1 2684003 R 272626 CDS NP_471995.1 16801727 1131506 complement(2684860..2685690) 1 NC_003212.1 similar to hypothetical cell wall binding protein from Bacillus subtilis; hypothetical protein 2685690 1131506 lin2666 Listeria innocua Clip11262 hypothetical protein NP_471995.1 2684860 R 272626 CDS NP_471996.1 16801728 1131507 complement(2686080..2686445) 1 NC_003212.1 similar to single-strand DNA-binding protein; hypothetical protein 2686445 1131507 lin2667 Listeria innocua Clip11262 hypothetical protein NP_471996.1 2686080 R 272626 CDS NP_471997.1 16801729 1131508 complement(2686700..2687134) 1 NC_003212.1 similar to hydroxymyristoyl-(acyl carrier protein) dehydratase; in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2687134 fabZ 1131508 fabZ Listeria innocua Clip11262 (3R)-hydroxymyristoyl-ACP dehydratase NP_471997.1 2686700 R 272626 CDS NP_471998.1 16801730 1131509 complement(2687156..2688151) 1 NC_003212.1 similar to MreB-like protein; rod shape-determining protein MreB 2688151 1131509 lin2669 Listeria innocua Clip11262 rod shape-determining protein MreB NP_471998.1 2687156 R 272626 CDS NP_471999.1 16801731 1131510 complement(2688314..2689606) 1 NC_003212.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2689606 murA 1131510 murA Listeria innocua Clip11262 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_471999.1 2688314 R 272626 CDS NP_472000.1 16801732 1131511 complement(2689773..2690009) 1 NC_003212.1 similar to Bacillus subtilis YwzB protein; hypothetical protein 2690009 1131511 lin2671 Listeria innocua Clip11262 hypothetical protein NP_472000.1 2689773 R 272626 CDS NP_472001.1 16801733 1131512 complement(2690132..2690536) 1 NC_003212.1 highly similar to H+-transporting ATP synthase chain epsilon; part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 2690536 atpC 1131512 atpC Listeria innocua Clip11262 F0F1 ATP synthase subunit epsilon NP_472001.1 2690132 R 272626 CDS NP_472002.1 16801734 1131513 complement(2690558..2691979) 1 NC_003212.1 highly similar to H+-transporting ATP synthase chain beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 2691979 1131513 lin2673 Listeria innocua Clip11262 F0F1 ATP synthase subunit beta NP_472002.1 2690558 R 272626 CDS NP_472003.1 16801735 1131514 complement(2692040..2692912) 1 NC_003212.1 highly similar to H+-transporting ATP synthase chain gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 2692912 1131514 lin2674 Listeria innocua Clip11262 F0F1 ATP synthase subunit gamma NP_472003.1 2692040 R 272626 CDS NP_472004.1 16801736 1131515 complement(2692950..2694464) 1 NC_003212.1 highly similar to H+-transporting ATP synthase chain alpha; produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2694464 1131515 lin2675 Listeria innocua Clip11262 F0F1 ATP synthase subunit alpha NP_472004.1 2692950 R 272626 CDS NP_472005.1 16801737 1131516 complement(2694491..2695030) 1 NC_003212.1 highly similar to H+-transporting ATP synthase chain delta; Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 2695030 1131516 lin2676 Listeria innocua Clip11262 F0F1 ATP synthase subunit delta NP_472005.1 2694491 R 272626 CDS NP_472006.1 16801738 1131517 complement(2695027..2695539) 1 NC_003212.1 highly similar to H+-transporting ATP synthase chain b; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B 2695539 1131517 lin2677 Listeria innocua Clip11262 F0F1 ATP synthase subunit B NP_472006.1 2695027 R 272626 CDS NP_472007.1 16801739 1131519 complement(2695627..2695845) 1 NC_003212.1 highly similar to H+-transporting ATP synthase chain c; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 2695845 1131519 lin2678 Listeria innocua Clip11262 F0F1 ATP synthase subunit C NP_472007.1 2695627 R 272626 CDS NP_472008.1 16801740 1131520 complement(2695917..2696633) 1 NC_003212.1 highly similar to H+-transporting ATP synthase chain a; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 2696633 1131520 lin2679 Listeria innocua Clip11262 F0F1 ATP synthase subunit A NP_472008.1 2695917 R 272626 CDS NP_472009.1 16801741 1131521 complement(2696640..2697038) 1 NC_003212.1 highly similar to ATP synthase subunit i; hypothetical protein 2697038 1131521 lin2680 Listeria innocua Clip11262 hypothetical protein NP_472009.1 2696640 R 272626 CDS NP_472010.1 16801742 1131523 complement(2697870..2699009) 1 NC_003212.1 similar to UDP-N-acetylglucosamine 2-epimerase; hypothetical protein 2699009 1131523 lin2681 Listeria innocua Clip11262 hypothetical protein NP_472010.1 2697870 R 272626 CDS NP_472011.1 16801743 1131524 complement(2699127..2699756) 1 NC_003212.1 highly similar to uracil phosphoribosyltransferase; Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2699756 upp 1131524 upp Listeria innocua Clip11262 uracil phosphoribosyltransferase NP_472011.1 2699127 R 272626 CDS NP_472012.1 16801744 1131525 complement(2699894..2701135) 1 NC_003212.1 highly similar to glycine hydroxymethyltransferase; catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2701135 glyA 1131525 glyA Listeria innocua Clip11262 serine hydroxymethyltransferase NP_472012.1 2699894 R 272626 CDS NP_472013.1 16801745 1131526 complement(2701271..2701678) 1 NC_003212.1 similar to phosphatases; hypothetical protein 2701678 1131526 lin2684 Listeria innocua Clip11262 hypothetical protein NP_472013.1 2701271 R 272626 CDS NP_472014.1 16801746 1131527 complement(2701675..2702712) 1 NC_003212.1 similar to yeast translation initiation protein; hypothetical protein 2702712 1131527 lin2685 Listeria innocua Clip11262 hypothetical protein NP_472014.1 2701675 R 272626 CDS NP_472015.1 16801747 1131529 complement(2703012..2703863) 1 NC_003212.1 similar to protoporphyrinogen oxidase; hypothetical protein 2703863 1131529 lin2686 Listeria innocua Clip11262 hypothetical protein NP_472015.1 2703012 R 272626 CDS NP_472016.1 16801748 1131530 complement(2703850..2704926) 1 NC_003212.1 highly similar to peptide chain release factor 1; recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2704926 prfA 1131530 prfA Listeria innocua Clip11262 peptide chain release factor 1 NP_472016.1 2703850 R 272626 CDS NP_472017.1 16801749 1131532 complement(2704949..2705524) 1 NC_003212.1 similar to thymidine kinase; catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2705524 1131532 lin2688 Listeria innocua Clip11262 thymidine kinase NP_472017.1 2704949 R 272626 CDS NP_472018.1 16801750 1131533 complement(2705646..2706512) 1 NC_003212.1 highly similar to homoserine kinase; catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2706512 1131533 lin2689 Listeria innocua Clip11262 homoserine kinase NP_472018.1 2705646 R 272626 CDS NP_472019.1 16801751 1131534 complement(2706512..2707567) 1 NC_003212.1 highly similar to threonine synthase; catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2707567 1131534 lin2690 Listeria innocua Clip11262 threonine synthase NP_472019.1 2706512 R 272626 CDS NP_472020.1 16801752 1131536 complement(2707570..2708856) 1 NC_003212.1 highly similar to homoserine dehydrogenase; catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2708856 1131536 lin2691 Listeria innocua Clip11262 homoserine dehydrogenase NP_472020.1 2707570 R 272626 CDS NP_472021.1 16801753 1131538 complement(2709078..2709323) 1 NC_003212.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 2709323 rpmE2 1131538 rpmE2 Listeria innocua Clip11262 50S ribosomal protein L31 type B NP_472021.1 2709078 R 272626 CDS NP_472022.1 16801754 1131539 complement(2709463..2710956) 1 NC_003212.1 lin2693; hypothetical protein 2710956 1131539 lin2693 Listeria innocua Clip11262 hypothetical protein NP_472022.1 2709463 R 272626 CDS NP_472023.1 16801755 1131540 complement(2710971..2711408) 1 NC_003212.1 wall teichoic acid glycosylation protein GtcA 2711408 gtcA 1131540 gtcA Listeria innocua Clip11262 wall teichoic acid glycosylation protein GtcA NP_472023.1 2710971 R 272626 CDS NP_472024.1 16801756 1131541 complement(2711405..2712352) 1 NC_003212.1 similar to glycosyl transferases; hypothetical protein 2712352 1131541 lin2695 Listeria innocua Clip11262 hypothetical protein NP_472024.1 2711405 R 272626 CDS NP_472025.1 16801757 1131542 complement(2712433..2713704) 1 NC_003212.1 highly similar to transcription terminator factor rho; An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2713704 rho 1131542 rho Listeria innocua Clip11262 transcription termination factor Rho NP_472025.1 2712433 R 272626 CDS NP_472026.1 16801758 1131543 complement(2713819..2715090) 1 NC_003212.1 highly similar to UDP-N-acetylglucosamine 1-carboxyvinyltransferase; adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2715090 1131543 lin2697 Listeria innocua Clip11262 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_472026.1 2713819 R 272626 CDS NP_472027.1 16801759 1131544 complement(2715208..2716281) 1 NC_003212.1 hypothetical protein 2716281 1131544 lin2698 Listeria innocua Clip11262 hypothetical protein NP_472027.1 2715208 R 272626 CDS NP_472028.1 16801760 1131545 complement(2716286..2717311) 1 NC_003212.1 similar to galactosyltransferase; hypothetical protein 2717311 1131545 lin2699 Listeria innocua Clip11262 hypothetical protein NP_472028.1 2716286 R 272626 CDS NP_472029.1 16801761 1131546 complement(2717304..2718587) 1 NC_003212.1 weakly similar to human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein; hypothetical protein 2718587 1131546 lin2700 Listeria innocua Clip11262 hypothetical protein NP_472029.1 2717304 R 272626 CDS NP_472030.1 16801762 1131547 complement(2718910..2719764) 1 NC_003212.1 highly similar to fructose-1,6-bisphosphate aldolase type II; hypothetical protein 2719764 1131547 lin2701 Listeria innocua Clip11262 hypothetical protein NP_472030.1 2718910 R 272626 CDS NP_472031.1 16801763 1131548 complement(2719933..2720853) 1 NC_003212.1 similar to YegS from E. coli; putative lipid kinase 2720853 1131548 lin2702 Listeria innocua Clip11262 putative lipid kinase NP_472031.1 2719933 R 272626 CDS NP_472032.1 16801764 1131549 2721169..2723481 1 NC_003212.1 autolysin; amidase 2723481 ami 1131549 ami Listeria innocua Clip11262 autolysin; amidase NP_472032.1 2721169 D 272626 CDS NP_472033.1 16801765 1131550 complement(2723531..2725129) 1 NC_003212.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2725129 pyrG 1131550 pyrG Listeria innocua Clip11262 CTP synthetase NP_472033.1 2723531 R 272626 CDS NP_472034.1 16801766 1131551 complement(2725494..2726030) 1 NC_003212.1 similar to Bacillus subtilis RNA polymerase delta subunit; participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 2726030 1131551 lin2705 Listeria innocua Clip11262 DNA-directed RNA polymerase subunit delta NP_472034.1 2725494 R 272626 CDS NP_472035.1 16801767 1131552 complement(2726397..2728067) 1 NC_003212.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2728067 argS 1131552 argS Listeria innocua Clip11262 arginyl-tRNA synthetase NP_472035.1 2726397 R 272626 CDS NP_472036.1 16801768 1131553 complement(2728064..2728513) 1 NC_003212.1 lin2707; hypothetical protein 2728513 1131553 lin2707 Listeria innocua Clip11262 hypothetical protein NP_472036.1 2728064 R 272626 CDS NP_472037.1 16801769 1131554 complement(2728591..2729244) 1 NC_003212.1 hypothetical protein 2729244 1131554 lin2708 Listeria innocua Clip11262 hypothetical protein NP_472037.1 2728591 R 272626 CDS NP_472038.1 16801770 1131555 2729318..2729503 1 NC_003212.1 similar to 4-oxalocrotonate isomerase; hypothetical protein 2729503 1131555 lin2709 Listeria innocua Clip11262 hypothetical protein NP_472038.1 2729318 D 272626 CDS NP_472039.1 16801771 1131556 complement(2729542..2730864) 1 NC_003212.1 hypothetical protein 2730864 1131556 lin2710 Listeria innocua Clip11262 hypothetical protein NP_472039.1 2729542 R 272626 CDS NP_472040.1 16801772 1131557 complement(2730888..2731724) 1 NC_003212.1 lin2711; hypothetical protein 2731724 1131557 lin2711 Listeria innocua Clip11262 hypothetical protein NP_472040.1 2730888 R 272626 CDS NP_472041.1 16801773 1131558 complement(2732042..2732245) 1 NC_003212.1 lin2712; hypothetical protein 2732245 1131558 lin2712 Listeria innocua Clip11262 hypothetical protein NP_472041.1 2732042 R 272626 CDS NP_472042.1 16801774 1131559 complement(2732269..2732592) 1 NC_003212.1 lin2713; hypothetical protein 2732592 1131559 lin2713 Listeria innocua Clip11262 hypothetical protein NP_472042.1 2732269 R 272626 CDS NP_472043.1 16801775 1131560 complement(2732747..2734408) 1 NC_003212.1 similar to dipeptide ABC transporter (dipeptide-binding protein); hypothetical protein 2734408 1131560 lin2714 Listeria innocua Clip11262 hypothetical protein NP_472043.1 2732747 R 272626 CDS NP_472044.1 16801776 1131561 complement(2734544..2735158) 1 NC_003212.1 lin2715; hypothetical protein 2735158 1131561 lin2715 Listeria innocua Clip11262 hypothetical protein NP_472044.1 2734544 R 272626 CDS NP_472045.1 16801777 1131562 complement(2735182..2735814) 1 NC_003212.1 similar to nicotinamidase; hypothetical protein 2735814 1131562 lin2716 Listeria innocua Clip11262 hypothetical protein NP_472045.1 2735182 R 272626 CDS NP_472046.1 16801778 1131563 complement(2735815..2736339) 1 NC_003212.1 similar to Chain A, Dihydrofolate Reductase; hypothetical protein 2736339 1131563 lin2717 Listeria innocua Clip11262 hypothetical protein NP_472046.1 2735815 R 272626 CDS NP_472047.1 16801779 1131565 complement(2736342..2737340) 1 NC_003212.1 similar to zinc-binding dehydrogenase; hypothetical protein 2737340 1131565 lin2718 Listeria innocua Clip11262 hypothetical protein NP_472047.1 2736342 R 272626 CDS NP_472048.1 16801780 1131567 complement(2737437..2737709) 1 NC_003212.1 lin2719; hypothetical protein 2737709 1131567 lin2719 Listeria innocua Clip11262 hypothetical protein NP_472048.1 2737437 R 272626 CDS NP_472049.1 16801781 1131568 complement(2737758..2738669) 1 NC_003212.1 similar to cation transport protein (efflux); hypothetical protein 2738669 1131568 lin2720 Listeria innocua Clip11262 hypothetical protein NP_472049.1 2737758 R 272626 CDS NP_472050.1 16801782 1131569 complement(2738800..2739627) 1 NC_003212.1 hypothetical protein 2739627 1131569 lin2721 Listeria innocua Clip11262 hypothetical protein NP_472050.1 2738800 R 272626 CDS NP_472051.1 16801783 1131570 2739742..2740617 1 NC_003212.1 lin2722; hypothetical protein 2740617 1131570 lin2722 Listeria innocua Clip11262 hypothetical protein NP_472051.1 2739742 D 272626 CDS NP_472052.1 16801784 1131571 2740630..2740914 1 NC_003212.1 hypothetical protein 2740914 1131571 lin2723 Listeria innocua Clip11262 hypothetical protein NP_472052.1 2740630 D 272626 CDS NP_472053.1 16801785 1131572 complement(2741130..2743946) 1 NC_003212.1 internalin-like protein 2743946 1131572 lin2724 Listeria innocua Clip11262 internalin-like protein NP_472053.1 2741130 R 272626 CDS NP_472054.1 16801786 1131573 complement(2744297..2744968) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 2744968 1131573 lin2725 Listeria innocua Clip11262 hypothetical protein NP_472054.1 2744297 R 272626 CDS NP_472055.1 16801787 1131574 complement(2744968..2746056) 1 NC_003212.1 hypothetical protein 2746056 1131574 lin2726 Listeria innocua Clip11262 hypothetical protein NP_472055.1 2744968 R 272626 CDS NP_472056.1 16801788 1131576 complement(2746135..2747514) 1 NC_003212.1 similar to two-component sensor histidine kinase; hypothetical protein 2747514 1131576 lin2727 Listeria innocua Clip11262 hypothetical protein NP_472056.1 2746135 R 272626 CDS NP_472057.1 16801789 1131577 complement(2747511..2748188) 1 NC_003212.1 similar to two-component response regulator; hypothetical protein 2748188 1131577 lin2728 Listeria innocua Clip11262 hypothetical protein NP_472057.1 2747511 R 272626 CDS NP_472058.1 16801790 1131579 complement(2748235..2749020) 1 NC_003212.1 similar to formate dehydrogenase associated protein; involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 2749020 1131579 lin2729 Listeria innocua Clip11262 formate dehydrogenase accessory protein NP_472058.1 2748235 R 272626 CDS NP_472059.1 16801791 1131580 complement(2749082..2749558) 1 NC_003212.1 similar to Bacillus subtilis YrhD protein; hypothetical protein 2749558 1131580 lin2730 Listeria innocua Clip11262 hypothetical protein NP_472059.1 2749082 R 272626 CDS NP_472060.1 16801792 1131581 complement(2749558..2752545) 1 NC_003212.1 similar to formate dehydrogenase alpha chain; hypothetical protein 2752545 1131581 lin2731 Listeria innocua Clip11262 hypothetical protein NP_472060.1 2749558 R 272626 CDS NP_472061.1 16801793 1131582 2753045..2753887 1 NC_003212.1 hypothetical protein 2753887 1131582 lin2732 Listeria innocua Clip11262 hypothetical protein NP_472061.1 2753045 D 272626 CDS NP_472062.1 16801794 1131583 complement(2753936..2755417) 1 NC_003212.1 similar to drug-export proteins; hypothetical protein 2755417 1131583 lin2733 Listeria innocua Clip11262 hypothetical protein NP_472062.1 2753936 R 272626 CDS NP_472063.1 16801795 1131584 complement(2755518..2756405) 1 NC_003212.1 similar to transcription regulator TetR/AcrR family; hypothetical protein 2756405 1131584 lin2734 Listeria innocua Clip11262 hypothetical protein NP_472063.1 2755518 R 272626 CDS NP_472064.1 16801796 1131585 complement(2756539..2757186) 1 NC_003212.1 lin2735; hypothetical protein 2757186 1131585 lin2735 Listeria innocua Clip11262 hypothetical protein NP_472064.1 2756539 R 272626 CDS NP_472065.1 16801797 1131586 complement(2757203..2757739) 1 NC_003212.1 lin2736; hypothetical protein 2757739 1131586 lin2736 Listeria innocua Clip11262 hypothetical protein NP_472065.1 2757203 R 272626 CDS NP_472066.1 16801798 1131590 complement(2763809..2764837) 1 NC_003212.1 similar to ATP binding proteins; hypothetical protein 2764837 1131590 lin2737 Listeria innocua Clip11262 hypothetical protein NP_472066.1 2763809 R 272626 CDS NP_472067.1 16801799 1131591 2765101..2766627 1 NC_003212.1 GW repeat-containing surface protein 2766627 1131591 lin2738 Listeria innocua Clip11262 GW repeat-containing surface protein NP_472067.1 2765101 D 272626 CDS NP_472068.1 16801800 1131592 complement(2766671..2767522) 1 NC_003212.1 similar to oxidoreductase, aldo/keto reductase family; hypothetical protein 2767522 1131592 lin2739 Listeria innocua Clip11262 hypothetical protein NP_472068.1 2766671 R 272626 CDS NP_472069.1 16801801 1131593 complement(2767544..2767966) 1 NC_003212.1 similar to transcription regulators (MerR family); hypothetical protein 2767966 1131593 lin2740 Listeria innocua Clip11262 hypothetical protein NP_472069.1 2767544 R 272626 CDS NP_472070.1 16801802 1131594 complement(2768472..2768930) 1 NC_003212.1 lin2741; hypothetical protein 2768930 1131594 lin2741 Listeria innocua Clip11262 hypothetical protein NP_472070.1 2768472 R 272626 CDS NP_472071.1 16801803 1131595 complement(2769814..2770404) 1 NC_003212.1 lin2742; hypothetical protein 2770404 1131595 lin2742 Listeria innocua Clip11262 hypothetical protein NP_472071.1 2769814 R 272626 CDS NP_472072.1 16801804 1131596 complement(2770410..2770706) 1 NC_003212.1 lin2743; hypothetical protein 2770706 1131596 lin2743 Listeria innocua Clip11262 hypothetical protein NP_472072.1 2770410 R 272626 CDS NP_472073.1 16801805 1131597 complement(2770707..2774711) 1 NC_003212.1 hypothetical protein 2774711 1131597 lin2744 Listeria innocua Clip11262 hypothetical protein NP_472073.1 2770707 R 272626 CDS NP_472074.1 16801806 1131599 complement(2775150..2775542) 1 NC_003212.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2775542 rpsI 1131599 rpsI Listeria innocua Clip11262 30S ribosomal protein S9 NP_472074.1 2775150 R 272626 CDS NP_472075.1 16801807 1131600 complement(2775564..2776001) 1 NC_003212.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2776001 rplM 1131600 rplM Listeria innocua Clip11262 50S ribosomal protein L13 NP_472075.1 2775564 R 272626 CDS NP_472076.1 16801808 1131601 complement(2776196..2776942) 1 NC_003212.1 highly similar to pseudouridylate synthase I; mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2776942 truA 1131601 truA Listeria innocua Clip11262 tRNA pseudouridine synthase A NP_472076.1 2776196 R 272626 CDS NP_472077.1 16801809 1131602 complement(2776948..2777745) 1 NC_003212.1 highly similar to Bacillus subtilis YbaF protein; hypothetical protein 2777745 1131602 lin2748 Listeria innocua Clip11262 hypothetical protein NP_472077.1 2776948 R 272626 CDS NP_472078.1 16801810 1131604 complement(2777748..2778614) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 2778614 cbiO 1131604 cbiO Listeria innocua Clip11262 cobalt transporter ATP-binding subunit NP_472078.1 2777748 R 272626 CDS NP_472079.1 16801811 1131606 complement(2778590..2779429) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 2779429 cbiO 1131606 cbiO Listeria innocua Clip11262 cobalt transporter ATP-binding subunit NP_472079.1 2778590 R 272626 CDS NP_472080.1 16801812 1131608 2779560..2780222 1 NC_003212.1 hypothetical protein 2780222 1131608 lin2751 Listeria innocua Clip11262 hypothetical protein NP_472080.1 2779560 D 272626 CDS NP_472081.1 16801813 1131609 2780340..2781239 1 NC_003212.1 lin2752; hypothetical protein 2781239 1131609 lin2752 Listeria innocua Clip11262 hypothetical protein NP_472081.1 2780340 D 272626 CDS NP_472082.1 16801814 1131610 complement(2781281..2782375) 1 NC_003212.1 lin2753; hypothetical protein 2782375 1131610 lin2753 Listeria innocua Clip11262 hypothetical protein NP_472082.1 2781281 R 272626 CDS NP_472083.1 16801815 1131611 complement(2782617..2783024) 1 NC_003212.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2783024 rplQ 1131611 rplQ Listeria innocua Clip11262 50S ribosomal protein L17 NP_472083.1 2782617 R 272626 CDS NP_472084.1 16801816 1131612 complement(2783041..2783985) 1 NC_003212.1 highly similar to RNA polymerase (alpha subunit); catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2783985 1131612 lin2755 Listeria innocua Clip11262 DNA-directed RNA polymerase subunit alpha NP_472084.1 2783041 R 272626 CDS NP_472085.1 16801817 1131613 complement(2784095..2784484) 1 NC_003212.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2784484 rpsK 1131613 rpsK Listeria innocua Clip11262 30S ribosomal protein S11 NP_472085.1 2784095 R 272626 CDS NP_472086.1 16801818 1131614 complement(2784507..2784872) 1 NC_003212.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2784872 rpsM 1131614 rpsM Listeria innocua Clip11262 30S ribosomal protein S13 NP_472086.1 2784507 R 272626 CDS NP_472087.1 16801819 1131615 complement(2784891..2785004) 1 NC_003212.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 2785004 rpmJ 1131615 rpmJ Listeria innocua Clip11262 50S ribosomal protein L36 NP_472087.1 2784891 R 272626 CDS NP_472088.1 16801820 1131616 complement(2785108..2785326) 1 NC_003212.1 highly similar to initiation factor IF-I; stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2785326 infA 1131616 infA Listeria innocua Clip11262 translation initiation factor IF-1 NP_472088.1 2785108 R 272626 CDS NP_472089.1 16801821 1131617 complement(2785714..2786361) 1 NC_003212.1 highly similar to adenylate kinases; essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2786361 adk 1131617 adk Listeria innocua Clip11262 adenylate kinase NP_472089.1 2785714 R 272626 CDS NP_472090.1 16801822 1131618 complement(2786421..2787716) 1 NC_003212.1 highly similar to preprotein translocase subunit; forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2787716 secY 1131618 secY Listeria innocua Clip11262 preprotein translocase subunit SecY NP_472090.1 2786421 R 272626 CDS NP_472091.1 16801823 1131619 complement(2787716..2788156) 1 NC_003212.1 late assembly protein; 50S ribosomal protein L15 2788156 rplO 1131619 rplO Listeria innocua Clip11262 50S ribosomal protein L15 NP_472091.1 2787716 R 272626 CDS NP_472092.1 16801824 1131621 complement(2788214..2788393) 1 NC_003212.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 2788393 rpmD 1131621 rpmD Listeria innocua Clip11262 50S ribosomal protein L30 NP_472092.1 2788214 R 272626 CDS NP_472093.1 16801825 1131622 complement(2788410..2788913) 1 NC_003212.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2788913 rpsE 1131622 rpsE Listeria innocua Clip11262 30S ribosomal protein S5 NP_472093.1 2788410 R 272626 CDS NP_472094.1 16801826 1131623 complement(2788935..2789294) 1 NC_003212.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2789294 rplR 1131623 rplR Listeria innocua Clip11262 50S ribosomal protein L18 NP_472094.1 2788935 R 272626 CDS NP_472095.1 16801827 1131624 complement(2789334..2789870) 1 NC_003212.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2789870 rplF 1131624 rplF Listeria innocua Clip11262 50S ribosomal protein L6 NP_472095.1 2789334 R 272626 CDS NP_472096.1 16801828 1131625 complement(2789901..2790299) 1 NC_003212.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2790299 rpsH 1131625 rpsH Listeria innocua Clip11262 30S ribosomal protein S8 NP_472096.1 2789901 R 272626 CDS NP_472097.1 16801829 1131626 complement(2790330..2790515) 1 NC_003212.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 2790515 rpsN 1131626 rpsN Listeria innocua Clip11262 30S ribosomal protein S14 NP_472097.1 2790330 R 272626 CDS NP_472098.1 16801830 1131627 complement(2790546..2791085) 1 NC_003212.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2791085 rplE 1131627 rplE Listeria innocua Clip11262 50S ribosomal protein L5 NP_472098.1 2790546 R 272626 CDS NP_472099.1 16801831 1131628 complement(2791112..2791423) 1 NC_003212.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2791423 rplX 1131628 rplX Listeria innocua Clip11262 50S ribosomal protein L24 NP_472099.1 2791112 R 272626 CDS NP_472100.1 16801832 1131629 complement(2791461..2791829) 1 NC_003212.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2791829 rplN 1131629 rplN Listeria innocua Clip11262 50S ribosomal protein L14 NP_472100.1 2791461 R 272626 CDS NP_472101.1 16801833 1131630 complement(2791909..2792172) 1 NC_003212.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2792172 rpsQ 1131630 rpsQ Listeria innocua Clip11262 30S ribosomal protein S17 NP_472101.1 2791909 R 272626 CDS NP_472102.1 16801834 1131631 complement(2792200..2792391) 1 NC_003212.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 2792391 rpmC 1131631 rpmC Listeria innocua Clip11262 50S ribosomal protein L29 NP_472102.1 2792200 R 272626 CDS NP_472103.1 16801835 1131632 complement(2792381..2792815) 1 NC_003212.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2792815 rplP 1131632 rplP Listeria innocua Clip11262 50S ribosomal protein L16 NP_472103.1 2792381 R 272626 CDS NP_472104.1 16801836 1131633 complement(2792818..2793474) 1 NC_003212.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2793474 rpsC 1131633 rpsC Listeria innocua Clip11262 30S ribosomal protein S3 NP_472104.1 2792818 R 272626 CDS NP_472105.1 16801837 1131635 complement(2793478..2793834) 1 NC_003212.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2793834 rplV 1131635 rplV Listeria innocua Clip11262 50S ribosomal protein L22 NP_472105.1 2793478 R 272626 CDS NP_472106.1 16801838 1131637 complement(2793855..2794133) 1 NC_003212.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2794133 rpsS 1131637 rpsS Listeria innocua Clip11262 30S ribosomal protein S19 NP_472106.1 2793855 R 272626 CDS NP_472107.1 16801839 1131638 complement(2794221..2795054) 1 NC_003212.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2795054 rplB 1131638 rplB Listeria innocua Clip11262 50S ribosomal protein L2 NP_472107.1 2794221 R 272626 CDS NP_472108.1 16801840 1131639 complement(2795095..2795379) 1 NC_003212.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2795379 rplW 1131639 rplW Listeria innocua Clip11262 50S ribosomal protein L23 NP_472108.1 2795095 R 272626 CDS NP_472109.1 16801841 1131640 complement(2795379..2796002) 1 NC_003212.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2796002 rplD 1131640 rplD Listeria innocua Clip11262 50S ribosomal protein L4 NP_472109.1 2795379 R 272626 CDS NP_472110.1 16801842 1131642 complement(2796028..2796657) 1 NC_003212.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2796657 rplC 1131642 rplC Listeria innocua Clip11262 50S ribosomal protein L3 NP_472110.1 2796028 R 272626 CDS NP_472111.1 16801843 1131643 complement(2796692..2797000) 1 NC_003212.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2797000 rpsJ 1131643 rpsJ Listeria innocua Clip11262 30S ribosomal protein S10 NP_472111.1 2796692 R 272626 CDS NP_472112.1 16801844 1131644 complement(2797361..2798161) 1 NC_003212.1 similar to Bacillus subtilis YbaF protein; hypothetical protein 2798161 1131644 lin2783 Listeria innocua Clip11262 hypothetical protein NP_472112.1 2797361 R 272626 CDS NP_472113.1 16801845 1131645 complement(2798181..2799140) 1 NC_003212.1 weakly similar to Escherichia coli MenA protein; catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2799140 1131645 lin2784 Listeria innocua Clip11262 1,4-dihydroxy-2-naphthoate octaprenyltransferase NP_472113.1 2798181 R 272626 CDS NP_472114.1 16801846 1131646 complement(2799222..2800304) 1 NC_003212.1 conserved hypothetical lipoprotein; hypothetical protein 2800304 1131646 lin2785 Listeria innocua Clip11262 hypothetical protein NP_472114.1 2799222 R 272626 CDS NP_472115.1 16801847 1131647 complement(2800467..2801366) 1 NC_003212.1 conserved lipoprotein; hypothetical protein 2801366 1131647 lin2786 Listeria innocua Clip11262 hypothetical protein NP_472115.1 2800467 R 272626 CDS NP_472116.1 16801848 1131648 2801812..2803698 1 NC_003212.1 similar to NADH dehydrogenase; hypothetical protein 2803698 1131648 lin2787 Listeria innocua Clip11262 hypothetical protein NP_472116.1 2801812 D 272626 CDS NP_472117.1 16801849 1131649 2803875..2804309 1 NC_003212.1 lin2788; hypothetical protein 2804309 1131649 lin2788 Listeria innocua Clip11262 hypothetical protein NP_472117.1 2803875 D 272626 CDS NP_472118.1 16801850 1131650 2804342..2804884 1 NC_003212.1 lin2789; hypothetical protein 2804884 1131650 lin2789 Listeria innocua Clip11262 hypothetical protein NP_472118.1 2804342 D 272626 CDS NP_472119.1 16801851 1131651 2804906..2805886 1 NC_003212.1 similar to heptaprenyl diphosphate synthase component II; hypothetical protein 2805886 1131651 lin2790 Listeria innocua Clip11262 hypothetical protein NP_472119.1 2804906 D 272626 CDS NP_472120.1 16801852 1131652 2805977..2807308 1 NC_003212.1 lin2791; hypothetical protein 2807308 1131652 lin2791 Listeria innocua Clip11262 hypothetical protein NP_472120.1 2805977 D 272626 CDS NP_472121.1 16801853 1131653 complement(2807357..2808343) 1 NC_003212.1 lin2792; hypothetical protein 2808343 1131653 lin2792 Listeria innocua Clip11262 hypothetical protein NP_472121.1 2807357 R 272626 CDS NP_472122.1 16801854 1131654 complement(2808370..2809182) 1 NC_003212.1 lin2793; hypothetical protein 2809182 1131654 lin2793 Listeria innocua Clip11262 hypothetical protein NP_472122.1 2808370 R 272626 CDS NP_472123.1 16801855 1131655 complement(2809261..2810004) 1 NC_003212.1 lin2794; hypothetical protein 2810004 1131655 lin2794 Listeria innocua Clip11262 hypothetical protein NP_472123.1 2809261 R 272626 CDS NP_472124.1 16801856 1131656 complement(2810005..2810724) 1 NC_003212.1 lin2795; hypothetical protein 2810724 1131656 lin2795 Listeria innocua Clip11262 hypothetical protein NP_472124.1 2810005 R 272626 CDS NP_472125.1 16801857 1131658 complement(2810684..2811433) 1 NC_003212.1 similar to creatinine amidohydrolase; hypothetical protein 2811433 1131658 lin2796 Listeria innocua Clip11262 hypothetical protein NP_472125.1 2810684 R 272626 CDS NP_472126.1 16801858 1131660 complement(2811446..2812438) 1 NC_003212.1 similar to Phosphotriesterase; hypothetical protein 2812438 1131660 lin2797 Listeria innocua Clip11262 hypothetical protein NP_472126.1 2811446 R 272626 CDS NP_472127.1 16801859 1131661 complement(2812509..2813807) 1 NC_003212.1 similar to hypothetical PTS enzyme IIC component; membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2813807 ulaA 1131661 ulaA Listeria innocua Clip11262 PTS system ascorbate-specific transporter subunit IIC NP_472127.1 2812509 R 272626 CDS NP_472128.1 16801860 1131662 complement(2813834..2814106) 1 NC_003212.1 similar to hypothetical PTS enzyme IIB component; hypothetical protein 2814106 1131662 lin2799 Listeria innocua Clip11262 hypothetical protein NP_472128.1 2813834 R 272626 CDS NP_472129.1 16801861 1131663 complement(2814109..2814543) 1 NC_003212.1 similar to mannitol-specific PTS enzyme IIA component; hypothetical protein 2814543 1131663 lin2800 Listeria innocua Clip11262 hypothetical protein NP_472129.1 2814109 R 272626 CDS NP_472130.1 16801862 1131665 complement(2814737..2816803) 1 NC_003212.1 similar to transcriptional antiterminator; hypothetical protein 2816803 1131665 lin2801 Listeria innocua Clip11262 hypothetical protein NP_472130.1 2814737 R 272626 CDS NP_472131.1 16801863 1131666 complement(2816958..2818145) 1 NC_003212.1 highly similar to translation elongation factor EF-Tu; EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2818145 tuf 1131666 tuf Listeria innocua Clip11262 elongation factor Tu NP_472131.1 2816958 R 272626 CDS NP_472132.1 16801864 1131667 complement(2818254..2820341) 1 NC_003212.1 highly similar to translation elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2820341 1131667 lin2803 Listeria innocua Clip11262 elongation factor G NP_472132.1 2818254 R 272626 CDS NP_472133.1 16801865 1131668 complement(2820407..2820877) 1 NC_003212.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2820877 rpsG 1131668 rpsG Listeria innocua Clip11262 30S ribosomal protein S7 NP_472133.1 2820407 R 272626 CDS NP_472134.1 16801866 1131669 complement(2820908..2821321) 1 NC_003212.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2821321 rpsL 1131669 rpsL Listeria innocua Clip11262 30S ribosomal protein S12 NP_472134.1 2820908 R 272626 CDS NP_472135.1 16801867 1131670 complement(2821514..2822911) 1 NC_003212.1 similar to dGTP triphosphohydrolase; dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2822911 1131670 lin2806 Listeria innocua Clip11262 deoxyguanosinetriphosphate triphosphohydrolase-like protein NP_472135.1 2821514 R 272626 CDS NP_472136.1 16801868 1131671 complement(2822927..2823406) 1 NC_003212.1 similar to spermidine/spermine N1-acetyl transferase; hypothetical protein 2823406 1131671 lin2807 Listeria innocua Clip11262 hypothetical protein NP_472136.1 2822927 R 272626 CDS NP_472137.1 16801869 1131672 complement(2823537..2824181) 1 NC_003212.1 similar to ribulose-phosphate 3-epimerase; hypothetical protein 2824181 1131672 lin2808 Listeria innocua Clip11262 hypothetical protein NP_472137.1 2823537 R 272626 CDS NP_472138.1 16801870 1131673 complement(2824178..2826193) 1 NC_003212.1 similar to transketolase; hypothetical protein 2826193 1131673 lin2809 Listeria innocua Clip11262 hypothetical protein NP_472138.1 2824178 R 272626 CDS NP_472139.1 16801871 1131674 complement(2826227..2826901) 1 NC_003212.1 similar to ribulose-5-phosphate 3-epimerase; hypothetical protein 2826901 1131674 lin2810 Listeria innocua Clip11262 hypothetical protein NP_472139.1 2826227 R 272626 CDS NP_472140.1 16801872 1131675 complement(2826910..2827350) 1 NC_003212.1 similar to ribose 5-phosphate epimerase; hypothetical protein 2827350 1131675 lin2811 Listeria innocua Clip11262 hypothetical protein NP_472140.1 2826910 R 272626 CDS NP_472141.1 16801873 1131676 complement(2827545..2828576) 1 NC_003212.1 similar to polyol dehydrogenase; hypothetical protein 2828576 1131676 lin2812 Listeria innocua Clip11262 hypothetical protein NP_472141.1 2827545 R 272626 CDS NP_472142.1 16801874 1131677 complement(2828578..2829630) 1 NC_003212.1 similar to sorbitol dehydrogenase; hypothetical protein 2829630 1131677 lin2813 Listeria innocua Clip11262 hypothetical protein NP_472142.1 2828578 R 272626 CDS NP_472143.1 16801875 1131679 complement(2829667..2830938) 1 NC_003212.1 similar to PTS system galactitol-specific enzyme IIC component; hypothetical protein 2830938 1131679 lin2814 Listeria innocua Clip11262 hypothetical protein NP_472143.1 2829667 R 272626 CDS NP_472144.1 16801876 1131680 complement(2831000..2831281) 1 NC_003212.1 similar to PTS system galactitol-specific enzyme IIB component; hypothetical protein 2831281 1131680 lin2815 Listeria innocua Clip11262 hypothetical protein NP_472144.1 2831000 R 272626 CDS NP_472145.1 16801877 1131681 complement(2831338..2831802) 1 NC_003212.1 similar to PTS system galactitol-specific enzyme IIA component; hypothetical protein 2831802 1131681 lin2816 Listeria innocua Clip11262 hypothetical protein NP_472145.1 2831338 R 272626 CDS NP_472146.1 16801878 1131682 complement(2831836..2833905) 1 NC_003212.1 similar to transcriptional antiterminator (BglG family); hypothetical protein 2833905 1131682 lin2817 Listeria innocua Clip11262 hypothetical protein NP_472146.1 2831836 R 272626 CDS NP_472147.1 16801879 1131683 complement(2834275..2835087) 1 NC_003212.1 lin2818; hypothetical protein 2835087 1131683 lin2818 Listeria innocua Clip11262 hypothetical protein NP_472147.1 2834275 R 272626 CDS NP_472148.1 16801880 1131684 complement(2835161..2835523) 1 NC_003212.1 hypothetical protein 2835523 1131684 lin2819 Listeria innocua Clip11262 hypothetical protein NP_472148.1 2835161 R 272626 CDS NP_472149.1 16801881 1131685 2835842..2836312 1 NC_003212.1 hypothetical protein 2836312 1131685 lin2820 Listeria innocua Clip11262 hypothetical protein NP_472149.1 2835842 D 272626 CDS NP_472150.1 16801882 1131686 2836358..2836813 1 NC_003212.1 similar to ribose 5-phosphate epimerase; catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 2836813 1131686 lin2821 Listeria innocua Clip11262 ribose-5-phosphate isomerase B NP_472150.1 2836358 D 272626 CDS NP_472151.1 16801883 1131687 2837012..2837353 1 NC_003212.1 lin2822; hypothetical protein 2837353 1131687 lin2822 Listeria innocua Clip11262 hypothetical protein NP_472151.1 2837012 D 272626 CDS NP_472152.1 16801884 1131688 2837366..2838622 1 NC_003212.1 similar to UV-damage repair protein; hypothetical protein 2838622 1131688 lin2823 Listeria innocua Clip11262 hypothetical protein NP_472152.1 2837366 D 272626 CDS NP_472153.1 16801885 1131690 complement(2838831..2839436) 1 NC_003212.1 similar to hydrolase (esterase) (truncated, N-terminal end); hypothetical protein 2839436 1131690 lin2825 Listeria innocua Clip11262 hypothetical protein NP_472153.1 2838831 R 272626 CDS NP_472154.1 16801886 1131691 complement(2839477..2840172) 1 NC_003212.1 similar to two components response regulator; hypothetical protein 2840172 1131691 lin2826 Listeria innocua Clip11262 hypothetical protein NP_472154.1 2839477 R 272626 CDS NP_472155.1 16801887 1131692 complement(2840169..2842859) 1 NC_003212.1 similar to the two components sensor protein kdpD; hypothetical protein 2842859 1131692 lin2827 Listeria innocua Clip11262 hypothetical protein NP_472155.1 2840169 R 272626 CDS NP_472156.1 16801888 1131693 complement(2842878..2843450) 1 NC_003212.1 potassium-transporting atpase c chain 2843450 kdpC 1131693 kdpC Listeria innocua Clip11262 potassium-transporting atpase c chain NP_472156.1 2842878 R 272626 CDS NP_472157.1 16801889 1131694 complement(2843465..2845510) 1 NC_003212.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 2845510 kdpB 1131694 kdpB Listeria innocua Clip11262 potassium-transporting ATPase subunit B NP_472157.1 2843465 R 272626 CDS NP_472158.1 16801890 1131695 complement(2845522..2847207) 1 NC_003212.1 highly similar to potassium-transporting atpase a chain; catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 2847207 1131695 lin2830 Listeria innocua Clip11262 potassium-transporting ATPase subunit A NP_472158.1 2845522 R 272626 CDS NP_472159.1 16801891 1131696 2847548..2847853 1 NC_003212.1 similar to cellobiose phosphotransferase enzyme IIB component; hypothetical protein 2847853 1131696 lin2831 Listeria innocua Clip11262 hypothetical protein NP_472159.1 2847548 D 272626 CDS NP_472160.1 16801892 1131697 2847990..2849297 1 NC_003212.1 similar to cellobiose phosphotransferase enzyme IIC component; hypothetical protein 2849297 1131697 lin2832 Listeria innocua Clip11262 hypothetical protein NP_472160.1 2847990 D 272626 CDS NP_472161.1 16801893 1131698 2849334..2849636 1 NC_003212.1 similar to cellobiose phosphotransferase enzyme IIA component; hypothetical protein 2849636 1131698 lin2833 Listeria innocua Clip11262 hypothetical protein NP_472161.1 2849334 D 272626 CDS NP_472162.1 16801894 1131699 complement(2850081..2851184) 1 NC_003212.1 similar to cell division protein FtsW; hypothetical protein 2851184 1131699 lin2834 Listeria innocua Clip11262 hypothetical protein NP_472162.1 2850081 R 272626 CDS NP_472163.1 16801895 1131700 complement(2851181..2852311) 1 NC_003212.1 similar to cell division protein FtsW; hypothetical protein 2852311 1131700 lin2835 Listeria innocua Clip11262 hypothetical protein NP_472163.1 2851181 R 272626 CDS NP_472164.1 16801896 1131702 complement(2852312..2854882) 1 NC_003212.1 highly similar to Mg2+ transport ATPase; hypothetical protein 2854882 1131702 lin2836 Listeria innocua Clip11262 hypothetical protein NP_472164.1 2852312 R 272626 CDS NP_472165.1 16801897 1131704 complement(2855437..2856003) 1 NC_003212.1 similar to transcription regulator, TetR family; hypothetical protein 2856003 1131704 lin2837 Listeria innocua Clip11262 hypothetical protein NP_472165.1 2855437 R 272626 CDS NP_472166.1 16801898 1131705 2856166..2857950 1 NC_003212.1 similar to autolysin, N-acetylmuramidase; cell wall hydrolase; muramidase-2 like protein in Enterococcus faecalis; in Enterococcus faecalis a mutant in this gene has no effect on virulence in mouse models; Listeria monocytogenes MurA in involved in general autolysis; contains an N-terminal muramidase domain and C-terminal LysM repeats for cell wall-anchoring; autolysin 2857950 1131705 lin2838 Listeria innocua Clip11262 autolysin NP_472166.1 2856166 D 272626 CDS NP_472167.1 16801899 1131706 complement(2858069..2858368) 1 NC_003212.1 lin2839; hypothetical protein 2858368 1131706 lin2839 Listeria innocua Clip11262 hypothetical protein NP_472167.1 2858069 R 272626 CDS NP_472168.1 16801900 1131707 complement(2859005..2859334) 1 NC_003212.1 lin2840; hypothetical protein 2859334 1131707 lin2840 Listeria innocua Clip11262 hypothetical protein NP_472168.1 2859005 R 272626 CDS NP_472169.1 16801901 1131708 complement(2859442..2860068) 1 NC_003212.1 similar to thymidylate kinase; catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2860068 tmk 1131708 tmk Listeria innocua Clip11262 thymidylate kinase NP_472169.1 2859442 R 272626 CDS NP_472170.1 16801902 1131709 complement(2860121..2861500) 1 NC_003212.1 similar to lysine decarboxylase; hypothetical protein 2861500 1131709 lin2842 Listeria innocua Clip11262 hypothetical protein NP_472170.1 2860121 R 272626 CDS NP_472171.1 16801903 1131710 2861684..2862673 1 NC_003212.1 similar to dihydroxyacetone kinase; with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 2862673 1131710 lin2843 Listeria innocua Clip11262 dihydroxyacetone kinase subunit DhaK NP_472171.1 2861684 D 272626 CDS NP_472172.1 16801904 1131711 2862695..2863291 1 NC_003212.1 similar to hypothetical dihydroxyacetone kinase; hypothetical protein 2863291 1131711 lin2844 Listeria innocua Clip11262 hypothetical protein NP_472172.1 2862695 D 272626 CDS NP_472173.1 16801905 1131713 2863295..2863669 1 NC_003212.1 lin2845; phosphotransferase mannnose-specific family component IIA 2863669 1131713 lin2845 Listeria innocua Clip11262 phosphotransferase mannnose-specific family component IIA NP_472173.1 2863295 D 272626 CDS NP_472174.1 16801906 1131714 2863775..2864626 1 NC_003212.1 similar to putative transcription regulator; hypothetical protein 2864626 1131714 lin2846 Listeria innocua Clip11262 hypothetical protein NP_472174.1 2863775 D 272626 CDS NP_472175.1 16801907 1131715 2864743..2865582 1 NC_003212.1 similar to conserved hypothetical protein; hypothetical protein 2865582 1131715 lin2847 Listeria innocua Clip11262 hypothetical protein NP_472175.1 2864743 D 272626 CDS NP_472176.1 16801908 1131716 2865709..2866551 1 NC_003212.1 similar to aldo/keto reductase; hypothetical protein 2866551 1131716 lin2848 Listeria innocua Clip11262 hypothetical protein NP_472176.1 2865709 D 272626 CDS NP_472177.1 16801909 1131717 complement(2866596..2866838) 1 NC_003212.1 similar to Bacillus subtilis YaaL protein; hypothetical protein 2866838 1131717 lin2849 Listeria innocua Clip11262 hypothetical protein NP_472177.1 2866596 R 272626 CDS NP_472178.1 16801910 1131718 complement(2866853..2867449) 1 NC_003212.1 highly similar to recombination protein recR; involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2867449 recR 1131718 recR Listeria innocua Clip11262 recombination protein RecR NP_472178.1 2866853 R 272626 CDS NP_472179.1 16801911 1131719 complement(2867559..2867876) 1 NC_003212.1 highly similar to Bacillus subtilis YaaK protein; hypothetical protein 2867876 1131719 lin2851 Listeria innocua Clip11262 hypothetical protein NP_472179.1 2867559 R 272626 CDS NP_472180.1 16801912 1131720 complement(2867906..2869645) 1 NC_003212.1 highly similar to DNA polymerase III (gamma and tau subunits); hypothetical protein 2869645 1131720 lin2852 Listeria innocua Clip11262 hypothetical protein NP_472180.1 2867906 R 272626 CDS NP_472181.1 16801913 1131721 complement(2869896..2870360) 1 NC_003212.1 lin2853; hypothetical protein 2870360 1131721 lin2853 Listeria innocua Clip11262 hypothetical protein NP_472181.1 2869896 R 272626 CDS NP_472182.1 16801914 1131722 complement(2870378..2870560) 1 NC_003212.1 lin2854; hypothetical protein 2870560 1131722 lin2854 Listeria innocua Clip11262 hypothetical protein NP_472182.1 2870378 R 272626 CDS NP_472183.1 16801915 1131723 complement(2870563..2870784) 1 NC_003212.1 lin2855; hypothetical protein 2870784 1131723 lin2855 Listeria innocua Clip11262 hypothetical protein NP_472183.1 2870563 R 272626 CDS NP_472184.1 16801916 1131724 complement(2870918..2872282) 1 NC_003212.1 similar to PTS system, cellobiose-specific enzyme IIC; hypothetical protein 2872282 1131724 lin2856 Listeria innocua Clip11262 hypothetical protein NP_472184.1 2870918 R 272626 CDS NP_472185.1 16801917 1131725 2872725..2872880 1 NC_003212.1 lin2857; hypothetical protein 2872880 1131725 lin2857 Listeria innocua Clip11262 hypothetical protein NP_472185.1 2872725 D 272626 CDS NP_472186.1 16801918 1131726 complement(2872925..2873566) 1 NC_003212.1 lin2858; hypothetical protein 2873566 1131726 lin2858 Listeria innocua Clip11262 hypothetical protein NP_472186.1 2872925 R 272626 CDS NP_472187.1 16801919 1131727 2873813..2874115 1 NC_003212.1 hypothetical protein 2874115 1131727 lin2859 Listeria innocua Clip11262 hypothetical protein NP_472187.1 2873813 D 272626 CDS NP_472188.1 16801920 1131728 complement(2874273..2875787) 1 NC_003212.1 highly similar to gluconate kinase; hypothetical protein 2875787 1131728 lin2860 Listeria innocua Clip11262 hypothetical protein NP_472188.1 2874273 R 272626 CDS NP_472189.1 16801921 1131729 complement(2875899..2876837) 1 NC_003212.1 GW repeat-containing protein 2876837 1131729 lin2861 Listeria innocua Clip11262 GW repeat-containing protein NP_472189.1 2875899 R 272626 CDS NP_472190.1 16801922 1131730 complement(2876879..2877841) 1 NC_003212.1 pepdidoglycan bound protein 2877841 1131730 lin2862 Listeria innocua Clip11262 pepdidoglycan bound protein NP_472190.1 2876879 R 272626 CDS NP_472191.1 16801923 1131731 complement(2877983..2879722) 1 NC_003212.1 highly similar to ABC transporter (ATP-binding protein) required for expression of cytochrome BD; hypothetical protein 2879722 1131731 lin2863 Listeria innocua Clip11262 hypothetical protein NP_472191.1 2877983 R 272626 CDS NP_472192.1 16801924 1131732 complement(2879722..2881446) 1 NC_003212.1 highly similar to ABC transporter required for expression of cytochrome BD; hypothetical protein 2881446 1131732 lin2864 Listeria innocua Clip11262 hypothetical protein NP_472192.1 2879722 R 272626 CDS NP_472193.1 16801925 1131734 complement(2881446..2882459) 1 NC_003212.1 highly similar to cytochrome D ubiquinol oxidase subunit II; hypothetical protein 2882459 1131734 lin2865 Listeria innocua Clip11262 hypothetical protein NP_472193.1 2881446 R 272626 CDS NP_472194.1 16801926 1131736 complement(2882446..2883852) 1 NC_003212.1 highly similar to cytochrome D ubiquinol oxidase subunit I; hypothetical protein 2883852 1131736 lin2866 Listeria innocua Clip11262 hypothetical protein NP_472194.1 2882446 R 272626 CDS NP_472195.1 16801927 1131738 complement(2884242..2884706) 1 NC_003212.1 hypothetical protein 2884706 1131738 lin2867 Listeria innocua Clip11262 hypothetical protein NP_472195.1 2884242 R 272626 CDS NP_472196.1 16801928 1131739 2884902..2886479 1 NC_003212.1 similar to acetate-CoA ligase; hypothetical protein 2886479 1131739 lin2868 Listeria innocua Clip11262 hypothetical protein NP_472196.1 2884902 D 272626 CDS NP_472197.1 16801929 1131740 complement(2886521..2887240) 1 NC_003212.1 similar to glucosamine-6-phosphate isomerase; putative 6-phosphogluconolactonase 2887240 1131740 lin2869 Listeria innocua Clip11262 putative 6-phosphogluconolactonase NP_472197.1 2886521 R 272626 CDS NP_472198.1 16801930 1131741 2887320..2888054 1 NC_003212.1 similar to merR-family transcriptional regulator; hypothetical protein 2888054 1131741 lin2870 Listeria innocua Clip11262 hypothetical protein NP_472198.1 2887320 D 272626 CDS NP_472199.1 16801931 1131742 2888108..2888569 1 NC_003212.1 hypothetical protein 2888569 1131742 lin2871 Listeria innocua Clip11262 hypothetical protein NP_472199.1 2888108 D 272626 CDS NP_472200.1 16801932 1131743 complement(2888589..2889032) 1 NC_003212.1 hypothetical protein 2889032 1131743 lin2872 Listeria innocua Clip11262 hypothetical protein NP_472200.1 2888589 R 272626 CDS NP_472201.1 16801933 1131744 complement(2889090..2890442) 1 NC_003212.1 hypothetical protein 2890442 1131744 lin2873 Listeria innocua Clip11262 hypothetical protein NP_472201.1 2889090 R 272626 CDS NP_472202.1 16801934 1131745 complement(2890439..2890888) 1 NC_003212.1 similar to transcription regulators; hypothetical protein 2890888 1131745 lin2874 Listeria innocua Clip11262 hypothetical protein NP_472202.1 2890439 R 272626 CDS NP_472203.1 16801935 1131746 2891058..2891939 1 NC_003212.1 hypothetical protein 2891939 1131746 lin2875 Listeria innocua Clip11262 hypothetical protein NP_472203.1 2891058 D 272626 CDS NP_472204.1 16801936 1131747 2892024..2892479 1 NC_003212.1 similar to transcription regulator MerR family; hypothetical protein 2892479 1131747 lin2876 Listeria innocua Clip11262 hypothetical protein NP_472204.1 2892024 D 272626 CDS NP_472205.1 16801937 1131749 2892479..2892883 1 NC_003212.1 hypothetical protein 2892883 1131749 lin2877 Listeria innocua Clip11262 hypothetical protein NP_472205.1 2892479 D 272626 CDS NP_472206.1 16801938 1131750 complement(2892927..2893538) 1 NC_003212.1 similar to phosphatase; hypothetical protein 2893538 1131750 lin2878 Listeria innocua Clip11262 hypothetical protein NP_472206.1 2892927 R 272626 CDS NP_472207.1 16801939 1131751 complement(2893552..2893920) 1 NC_003212.1 similar to transcription regulator (RpiR family); hypothetical protein 2893920 1131751 lin2879 Listeria innocua Clip11262 hypothetical protein NP_472207.1 2893552 R 272626 CDS NP_472208.1 16801940 1131752 complement(2894028..2894984) 1 NC_003212.1 similar to transcriptional regulator (LacI family); hypothetical protein 2894984 1131752 lin2880 Listeria innocua Clip11262 hypothetical protein NP_472208.1 2894028 R 272626 CDS NP_472209.1 16801941 1131753 complement(2895052..2896386) 1 NC_003212.1 conserved hypothetical protein similar to hypothetical hemolysin; hypothetical protein 2896386 1131753 lin2881 Listeria innocua Clip11262 hypothetical protein NP_472209.1 2895052 R 272626 CDS NP_472210.1 16801942 1131754 complement(2896479..2897168) 1 NC_003212.1 similar to regulatory proteins of the SIR2 family; Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2897168 1131754 lin2882 Listeria innocua Clip11262 NAD-dependent deacetylase NP_472210.1 2896479 R 272626 CDS NP_472211.1 16801943 1131755 complement(2897161..2897451) 1 NC_003212.1 lin2883; hypothetical protein 2897451 1131755 lin2883 Listeria innocua Clip11262 hypothetical protein NP_472211.1 2897161 R 272626 CDS NP_472212.1 16801944 1131757 complement(2897441..2898649) 1 NC_003212.1 similar to drug-efflux transporters; hypothetical protein 2898649 1131757 lin2884 Listeria innocua Clip11262 hypothetical protein NP_472212.1 2897441 R 272626 CDS NP_472213.1 16801945 1131759 complement(2898766..2899113) 1 NC_003212.1 lin2885; hypothetical protein 2899113 1131759 lin2885 Listeria innocua Clip11262 hypothetical protein NP_472213.1 2898766 R 272626 CDS NP_472214.1 16801946 1131760 complement(2899132..2899776) 1 NC_003212.1 similar to transaldolase; similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 2899776 1131760 lin2886 Listeria innocua Clip11262 putative translaldolase NP_472214.1 2899132 R 272626 CDS NP_472215.1 16801947 1131761 complement(2899921..2900610) 1 NC_003212.1 weakly similar to transcription regulators CRP/FNR family; hypothetical protein 2900610 1131761 lin2887 Listeria innocua Clip11262 hypothetical protein NP_472215.1 2899921 R 272626 CDS NP_472216.1 16801948 1131762 2900941..2902668 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2902668 1131762 lin2888 Listeria innocua Clip11262 hypothetical protein NP_472216.1 2900941 D 272626 CDS NP_472217.1 16801949 1131763 complement(2902721..2902972) 1 NC_003212.1 lin2889; hypothetical protein 2902972 1131763 lin2889 Listeria innocua Clip11262 hypothetical protein NP_472217.1 2902721 R 272626 CDS NP_472218.1 16801950 1131764 complement(2902992..2904275) 1 NC_003212.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2904275 serS 1131764 serS Listeria innocua Clip11262 seryl-tRNA synthetase NP_472218.1 2902992 R 272626 CDS NP_472219.1 16801951 1131765 complement(2904611..2905030) 1 NC_003212.1 similar to Bacillus subtilis stress protein YdaG; hypothetical protein 2905030 1131765 lin2891 Listeria innocua Clip11262 hypothetical protein NP_472219.1 2904611 R 272626 CDS NP_472220.1 16801952 1131766 2905161..2905733 1 NC_003212.1 similar to glutamine amidotransferase; hypothetical protein 2905733 1131766 lin2892 Listeria innocua Clip11262 hypothetical protein NP_472220.1 2905161 D 272626 CDS NP_472221.1 16801953 1131767 2905730..2907436 1 NC_003212.1 similar to para-aminobenzoate synthase component I; hypothetical protein 2907436 1131767 lin2893 Listeria innocua Clip11262 hypothetical protein NP_472221.1 2905730 D 272626 CDS NP_472222.1 16801954 1131768 2907598..2909319 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 2909319 1131768 lin2894 Listeria innocua Clip11262 hypothetical protein NP_472222.1 2907598 D 272626 CDS NP_472223.1 16801955 1131770 2909319..2911091 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 2911091 1131770 lin2895 Listeria innocua Clip11262 hypothetical protein NP_472223.1 2909319 D 272626 CDS NP_472224.1 16801956 1131771 2911296..2911685 1 NC_003212.1 lin2896; hypothetical protein 2911685 1131771 lin2896 Listeria innocua Clip11262 hypothetical protein NP_472224.1 2911296 D 272626 CDS NP_472225.1 16801957 1131773 complement(2911566..2912903) 1 NC_003212.1 similar to D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); hypothetical protein 2912903 1131773 lin2897 Listeria innocua Clip11262 hypothetical protein NP_472225.1 2911566 R 272626 CDS NP_472226.1 16801958 1131774 complement(2913080..2914747) 1 NC_003212.1 similar to acylase and diesterase; hypothetical protein 2914747 1131774 lin2898 Listeria innocua Clip11262 hypothetical protein NP_472226.1 2913080 R 272626 CDS NP_472227.1 16801959 1131776 complement(2917032..2918804) 1 NC_003212.1 similar to ATP-dependent DNA helicases; hypothetical protein 2918804 1131776 lin2900 Listeria innocua Clip11262 hypothetical protein NP_472227.1 2917032 R 272626 CDS NP_472228.1 16801960 1131777 complement(2918964..2920430) 1 NC_003212.1 similar to inosine-monophosphate dehydrogenase; hypothetical protein 2920430 1131777 lin2901 Listeria innocua Clip11262 hypothetical protein NP_472228.1 2918964 R 272626 CDS NP_472229.1 16801961 1131778 complement(2920719..2921249) 1 NC_003212.1 hypothetical protein 2921249 1131778 lin2902 Listeria innocua Clip11262 hypothetical protein NP_472229.1 2920719 R 272626 CDS NP_472230.1 16801962 1131779 complement(2921307..2922917) 1 NC_003212.1 similar to ABC transporter (ATP-binding protein); hypothetical protein 2922917 1131779 lin2903 Listeria innocua Clip11262 hypothetical protein NP_472230.1 2921307 R 272626 CDS NP_472231.1 16801963 1131780 2923435..2924889 1 NC_003212.1 similar to beta-glucosidase; hypothetical protein 2924889 1131780 lin2904 Listeria innocua Clip11262 hypothetical protein NP_472231.1 2923435 D 272626 CDS NP_472232.1 16801964 1131781 2924935..2925237 1 NC_003212.1 similar to PTS cellobiose-specific enzyme IIB; hypothetical protein 2925237 1131781 lin2905 Listeria innocua Clip11262 hypothetical protein NP_472232.1 2924935 D 272626 CDS NP_472233.1 16801965 1131782 2925271..2926623 1 NC_003212.1 similar to PTS cellobiose-specific enzyme IIC; hypothetical protein 2926623 1131782 lin2906 Listeria innocua Clip11262 hypothetical protein NP_472233.1 2925271 D 272626 CDS NP_472234.1 16801966 1131783 2926635..2927519 1 NC_003212.1 similar to xylose operon regulatory protein and to glucose kinase; hypothetical protein 2927519 1131783 lin2907 Listeria innocua Clip11262 hypothetical protein NP_472234.1 2926635 D 272626 CDS NP_472235.1 16801967 1131785 2927512..2927820 1 NC_003212.1 similar to PTS cellobiose-specific enzyme IIA; hypothetical protein 2927820 1131785 lin2908 Listeria innocua Clip11262 hypothetical protein NP_472235.1 2927512 D 272626 CDS NP_472236.1 16801968 1131786 complement(2927860..2928594) 1 NC_003212.1 similar to hypothetical transcriptional regulator; hypothetical protein 2928594 1131786 lin2909 Listeria innocua Clip11262 hypothetical protein NP_472236.1 2927860 R 272626 CDS NP_472237.1 16801969 1131787 complement(2928694..2929368) 1 NC_003212.1 lin2910; hypothetical protein 2929368 1131787 lin2910 Listeria innocua Clip11262 hypothetical protein NP_472237.1 2928694 R 272626 CDS NP_472238.1 16801970 1131788 complement(2929421..2930551) 1 NC_003212.1 hypothetical membrane protein; hypothetical protein 2930551 1131788 lin2911 Listeria innocua Clip11262 hypothetical protein NP_472238.1 2929421 R 272626 CDS NP_472239.1 16801971 1131789 complement(2930580..2931467) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 2931467 1131789 lin2912 Listeria innocua Clip11262 hypothetical protein NP_472239.1 2930580 R 272626 CDS NP_472240.1 16801972 1131790 2931631..2933961 1 NC_003212.1 similar to gamma-glutamylcysteine synthetase (for the N_terminal part) and to cyanophycin synthetase (C-terminal part); Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 2933961 1131790 lin2913 Listeria innocua Clip11262 bifunctional glutamate--cysteine ligase/glutathione synthetase NP_472240.1 2931631 D 272626 CDS NP_472241.1 16801973 1131791 complement(2934186..2934809) 1 NC_003212.1 similar to ABC transporter, ATP-binding protein; hypothetical protein 2934809 1131791 lin2914 Listeria innocua Clip11262 hypothetical protein NP_472241.1 2934186 R 272626 CDS NP_472242.1 16801974 1131792 complement(2934802..2936970) 1 NC_003212.1 hypothetical membrane protein; hypothetical protein 2936970 1131792 lin2915 Listeria innocua Clip11262 hypothetical protein NP_472242.1 2934802 R 272626 CDS NP_472243.1 16801975 1131794 2937485..2938675 1 NC_003212.1 similar to efflux protein; hypothetical protein 2938675 1131794 lin2916 Listeria innocua Clip11262 hypothetical protein NP_472243.1 2937485 D 272626 CDS NP_472244.1 16801976 1131795 complement(2938809..2939318) 1 NC_003212.1 lin2917; hypothetical protein 2939318 1131795 lin2917 Listeria innocua Clip11262 hypothetical protein NP_472244.1 2938809 R 272626 CDS NP_472245.1 16801977 1131796 complement(2939537..2940016) 1 NC_003212.1 lin2918; hypothetical protein 2940016 1131796 lin2918 Listeria innocua Clip11262 hypothetical protein NP_472245.1 2939537 R 272626 CDS NP_472246.1 16801978 1131797 complement(2940191..2941291) 1 NC_003212.1 similar to probable GTP-binding protein; translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2941291 1131797 lin2919 Listeria innocua Clip11262 GTP-dependent nucleic acid-binding protein EngD NP_472246.1 2940191 R 272626 CDS NP_472247.1 16801979 1131798 complement(2941440..2942906) 1 NC_003212.1 catalase 2942906 kat 1131798 kat Listeria innocua Clip11262 catalase NP_472247.1 2941440 R 272626 CDS NP_472248.1 16801980 1131799 complement(2943055..2943252) 1 NC_003212.1 hypothetical protein 2943252 1131799 lin2921 Listeria innocua Clip11262 hypothetical protein NP_472248.1 2943055 R 272626 CDS NP_472249.1 16801981 1131800 complement(2943265..2944116) 1 NC_003212.1 partition protein ParB homolg 2944116 parB 1131800 parB Listeria innocua Clip11262 partition protein ParB homolg NP_472249.1 2943265 R 272626 CDS NP_472250.1 16801982 1131801 complement(2944109..2944870) 1 NC_003212.1 partition protein, ParA-like protein 2944870 parA 1131801 parA Listeria innocua Clip11262 partition protein, ParA-like protein NP_472250.1 2944109 R 272626 CDS NP_472251.1 16801983 1131803 complement(2945095..2945853) 1 NC_003212.1 lin2924; hypothetical protein 2945853 1131803 lin2924 Listeria innocua Clip11262 hypothetical protein NP_472251.1 2945095 R 272626 CDS NP_472252.1 16801984 1131804 complement(2946019..2946318) 1 NC_003212.1 lin2925; hypothetical protein 2946318 1131804 lin2925 Listeria innocua Clip11262 hypothetical protein NP_472252.1 2946019 R 272626 CDS NP_472253.1 16801985 1131805 complement(2946330..2947184) 1 NC_003212.1 highly similar to Bacillus subtilis DNA-binding protein Spo0J-like homolog YyaA; hypothetical protein 2947184 1131805 lin2926 Listeria innocua Clip11262 hypothetical protein NP_472253.1 2946330 R 272626 CDS NP_472254.1 16801986 1131806 complement(2947365..2948171) 1 NC_003212.1 similar to Escherichia coli RpiR transcription regulator; hypothetical protein 2948171 1131806 lin2927 Listeria innocua Clip11262 hypothetical protein NP_472254.1 2947365 R 272626 CDS NP_472255.1 16801987 1131807 complement(2948155..2949060) 1 NC_003212.1 similar to transcription regulator; hypothetical protein 2949060 1131807 lin2928 Listeria innocua Clip11262 hypothetical protein NP_472255.1 2948155 R 272626 CDS NP_472256.1 16801988 1131809 complement(2949085..2949531) 1 NC_003212.1 similar to phosphotransferase system mannitol-specific enzyme IIA; hypothetical protein 2949531 1131809 lin2929 Listeria innocua Clip11262 hypothetical protein NP_472256.1 2949085 R 272626 CDS NP_472257.1 16801989 1131810 complement(2949544..2950200) 1 NC_003212.1 similar to phosphatase; hypothetical protein 2950200 1131810 lin2930 Listeria innocua Clip11262 hypothetical protein NP_472257.1 2949544 R 272626 CDS NP_472258.1 16801990 1131811 complement(2950263..2951669) 1 NC_003212.1 similar to phosphotransferase system mannitol-specific enzyme IIBC; hypothetical protein 2951669 1131811 lin2931 Listeria innocua Clip11262 hypothetical protein NP_472258.1 2950263 R 272626 CDS NP_472259.1 16801991 1131812 complement(2951703..2952704) 1 NC_003212.1 similar to dehydrogenase; hypothetical protein 2952704 1131812 lin2932 Listeria innocua Clip11262 hypothetical protein NP_472259.1 2951703 R 272626 CDS NP_472260.1 16801992 1131813 complement(2952724..2953419) 1 NC_003212.1 similar to a putative N-acetylmannosamine-6-phosphate epimerase; Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 2953419 1131813 lin2933 Listeria innocua Clip11262 N-acetylmannosamine-6-phosphate 2-epimerase NP_472260.1 2952724 R 272626 CDS NP_472261.1 16801993 1131814 complement(2953621..2954337) 1 NC_003212.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 2954337 gidB 1131814 gidB Listeria innocua Clip11262 16S rRNA methyltransferase GidB NP_472261.1 2953621 R 272626 CDS NP_472262.1 16801994 1131815 complement(2954768..2955133) 1 NC_003212.1 lin2935; hypothetical protein 2955133 1131815 lin2935 Listeria innocua Clip11262 hypothetical protein NP_472262.1 2954768 R 272626 CDS NP_472263.1 16801995 1131816 complement(2955126..2956409) 1 NC_003212.1 lin2936; hypothetical protein 2956409 1131816 lin2936 Listeria innocua Clip11262 hypothetical protein NP_472263.1 2955126 R 272626 CDS NP_472264.1 16801996 1131818 complement(2956412..2956798) 1 NC_003212.1 hypothetical secreted protein; hypothetical protein 2956798 1131818 lin2937 Listeria innocua Clip11262 hypothetical protein NP_472264.1 2956412 R 272626 CDS NP_472265.1 16801997 1131820 complement(2956910..2957302) 1 NC_003212.1 hypothetical secreted protein; hypothetical protein 2957302 1131820 lin2938 Listeria innocua Clip11262 hypothetical protein NP_472265.1 2956910 R 272626 CDS NP_472266.1 16801998 1131821 complement(2957430..2957807) 1 NC_003212.1 hypothetical secreted protein; hypothetical protein 2957807 1131821 lin2939 Listeria innocua Clip11262 hypothetical protein NP_472266.1 2957430 R 272626 CDS NP_472267.1 16801999 1131822 complement(2958038..2959000) 1 NC_003212.1 similar to abortive phage resistance mechanism [Lactococcus lactis]; hypothetical protein 2959000 1131822 lin2940 Listeria innocua Clip11262 hypothetical protein NP_472267.1 2958038 R 272626 CDS NP_472268.1 16802000 1131823 complement(2959004..2960995) 1 NC_003212.1 lin2941; hypothetical protein 2960995 1131823 lin2941 Listeria innocua Clip11262 hypothetical protein NP_472268.1 2959004 R 272626 CDS NP_472269.1 16802001 1131825 complement(2961357..2963246) 1 NC_003212.1 highly similar to GidA protein; GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2963246 1131825 lin2942 Listeria innocua Clip11262 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA NP_472269.1 2961357 R 272626 CDS NP_472270.1 16802002 1131826 complement(2963271..2964644) 1 NC_003212.1 similar to GTPase; in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2964644 trmE 1131826 trmE Listeria innocua Clip11262 tRNA modification GTPase TrmE NP_472270.1 2963271 R 272626 CDS NP_472271.1 16802003 1131827 2965002..2965820 1 NC_003212.1 similar to D-alanyl-D-alanine carboxypeptidase; hypothetical protein 2965820 1131827 lin2944 Listeria innocua Clip11262 hypothetical protein NP_472271.1 2965002 D 272626 CDS NP_472272.1 16802004 1131828 complement(2965871..2966446) 1 NC_003212.1 lin2945; hypothetical protein 2966446 1131828 lin2945 Listeria innocua Clip11262 hypothetical protein NP_472272.1 2965871 R 272626 CDS NP_472273.1 16802005 1131829 complement(2966428..2967135) 1 NC_003212.1 lin2946; hypothetical protein 2967135 1131829 lin2946 Listeria innocua Clip11262 hypothetical protein NP_472273.1 2966428 R 272626 CDS NP_472274.1 16802006 1131831 complement(2967155..2967682) 1 NC_003212.1 similar to transcriptional regulator; hypothetical protein 2967682 1131831 lin2947 Listeria innocua Clip11262 hypothetical protein NP_472274.1 2967155 R 272626 CDS NP_472275.1 16802007 1131832 2967835..2968566 1 NC_003212.1 similar to reductases; catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 2968566 fabG 1131832 fabG Listeria innocua Clip11262 3-ketoacyl-(acyl-carrier-protein) reductase NP_472275.1 2967835 D 272626 CDS NP_472276.1 16802008 1131833 complement(2968613..2969818) 1 NC_003212.1 similar to transport protein; hypothetical protein 2969818 1131833 lin2949 Listeria innocua Clip11262 hypothetical protein NP_472276.1 2968613 R 272626 CDS NP_472277.1 16802009 1131834 complement(2969906..2971096) 1 NC_003212.1 similar to peptidases; hypothetical protein 2971096 1131834 lin2950 Listeria innocua Clip11262 hypothetical protein NP_472277.1 2969906 R 272626 CDS NP_472278.1 16802010 1131835 complement(2971112..2972512) 1 NC_003212.1 similar to transmembrane efflux protein; hypothetical protein 2972512 1131835 lin2951 Listeria innocua Clip11262 hypothetical protein NP_472278.1 2971112 R 272626 CDS NP_472279.1 16802011 1131836 complement(2972512..2973714) 1 NC_003212.1 similar to carboxypeptidase; hypothetical protein 2973714 1131836 lin2952 Listeria innocua Clip11262 hypothetical protein NP_472279.1 2972512 R 272626 CDS NP_472280.1 16802012 1131838 complement(2973909..2976251) 1 NC_003212.1 amino-terminal domain-containing protein 2976251 1131838 lin2953 Listeria innocua Clip11262 amino-terminal domain-containing protein NP_472280.1 2973909 R 272626 CDS NP_472281.1 16802013 1131839 complement(2976380..2976703) 1 NC_003212.1 lin2954; hypothetical protein 2976703 1131839 lin2954 Listeria innocua Clip11262 hypothetical protein NP_472281.1 2976380 R 272626 CDS NP_472282.1 16802014 1131840 complement(2976711..2977952) 1 NC_003212.1 similar to an hypothetical protein from Thermotoga maritima; hypothetical protein 2977952 1131840 lin2955 Listeria innocua Clip11262 hypothetical protein NP_472282.1 2976711 R 272626 CDS NP_472283.1 16802015 1131841 complement(2978041..2979228) 1 NC_003212.1 similar to D-3-phosphoglycerate dehydrogenase; hypothetical protein 2979228 1131841 lin2956 Listeria innocua Clip11262 hypothetical protein NP_472283.1 2978041 R 272626 CDS NP_472284.1 16802016 1131842 complement(2979221..2980312) 1 NC_003212.1 highly similar to phosphoserine aminotransferase; catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2980312 1131842 lin2957 Listeria innocua Clip11262 phosphoserine aminotransferase NP_472284.1 2979221 R 272626 CDS NP_472285.1 16802017 1131845 complement(2981458..2981832) 1 NC_003212.1 similar to efflux proteins (truncated, N-terminal end); hypothetical protein 2981832 1131845 lin2959 Listeria innocua Clip11262 hypothetical protein NP_472285.1 2981458 R 272626 CDS NP_472286.1 16802018 1131846 complement(2981846..2982268) 1 NC_003212.1 similar to transcriptional regulator (MarR family); hypothetical protein 2982268 1131846 lin2960 Listeria innocua Clip11262 hypothetical protein NP_472286.1 2981846 R 272626 CDS NP_472287.1 16802019 1131847 complement(2982372..2982725) 1 NC_003212.1 lin2961; hypothetical protein 2982725 1131847 lin2961 Listeria innocua Clip11262 hypothetical protein NP_472287.1 2982372 R 272626 CDS NP_472288.1 16802020 1131848 2982919..2983518 1 NC_003212.1 similar to yeast protein Frm2p involved in fatty acid signaling; hypothetical protein 2983518 1131848 lin2962 Listeria innocua Clip11262 hypothetical protein NP_472288.1 2982919 D 272626 CDS NP_472289.1 16802021 1131849 complement(2983576..2983896) 1 NC_003212.1 similar to thioredoxin; hypothetical protein 2983896 1131849 lin2963 Listeria innocua Clip11262 hypothetical protein NP_472289.1 2983576 R 272626 CDS NP_472290.1 16802022 1131850 complement(2984019..2984681) 1 NC_003212.1 similar to phosphoglucomutase; hypothetical protein 2984681 1131850 lin2964 Listeria innocua Clip11262 hypothetical protein NP_472290.1 2984019 R 272626 CDS NP_472291.1 16802023 1131851 complement(2984678..2985799) 1 NC_003212.1 hypothetical protein 2985799 1131851 lin2965 Listeria innocua Clip11262 hypothetical protein NP_472291.1 2984678 R 272626 CDS NP_472292.1 16802024 1131853 complement(2985796..2987973) 1 NC_003212.1 similar to a maltose phosphorylase; hypothetical protein 2987973 1131853 lin2966 Listeria innocua Clip11262 hypothetical protein NP_472292.1 2985796 R 272626 CDS NP_472293.1 16802025 1131854 complement(2987970..2989001) 1 NC_003212.1 similar to oxidoreductases; hypothetical protein 2989001 1131854 lin2967 Listeria innocua Clip11262 hypothetical protein NP_472293.1 2987970 R 272626 CDS NP_472294.1 16802026 1131855 complement(2989058..2989852) 1 NC_003212.1 highly similar to an Escherichia coli protein; hypothetical protein 2989852 1131855 lin2968 Listeria innocua Clip11262 hypothetical protein NP_472294.1 2989058 R 272626 CDS NP_472295.1 16802027 1131856 complement(2989865..2990917) 1 NC_003212.1 similar to alcohol dehydrogenase; hypothetical protein 2990917 1131856 lin2969 Listeria innocua Clip11262 hypothetical protein NP_472295.1 2989865 R 272626 CDS NP_472296.1 16802028 1131857 complement(2990936..2991787) 1 NC_003212.1 similar to sugar ABC transporter permease protein; hypothetical protein 2991787 1131857 lin2970 Listeria innocua Clip11262 hypothetical protein NP_472296.1 2990936 R 272626 CDS NP_472297.1 16802029 1131858 complement(2991774..2992655) 1 NC_003212.1 similar to sugar ABC transporter permease protein; hypothetical protein 2992655 1131858 lin2971 Listeria innocua Clip11262 hypothetical protein NP_472297.1 2991774 R 272626 CDS NP_472298.1 16802030 1131859 complement(2992731..2994023) 1 NC_003212.1 similar to sugar binding protein (ABC transporter); hypothetical protein 2994023 1131859 lin2972 Listeria innocua Clip11262 hypothetical protein NP_472298.1 2992731 R 272626 CDS NP_472299.1 16802031 1131860 complement(2994020..2995720) 1 NC_003212.1 similar to Sucrose phosphorylase; hypothetical protein 2995720 1131860 lin2973 Listeria innocua Clip11262 hypothetical protein NP_472299.1 2994020 R 272626 CDS NP_472300.1 16802032 1131862 2995943..2996968 1 NC_003212.1 similar to transcriptional regulator; hypothetical protein 2996968 1131862 lin2974 Listeria innocua Clip11262 hypothetical protein NP_472300.1 2995943 D 272626 CDS NP_472301.1 16802033 1131863 complement(2997108..2999102) 1 NC_003212.1 lin2975; hypothetical protein 2999102 1131863 lin2975 Listeria innocua Clip11262 hypothetical protein NP_472301.1 2997108 R 272626 CDS NP_472302.1 16802034 1131864 complement(2999283..2999825) 1 NC_003212.1 hypothetical protein 2999825 1131864 lin2976 Listeria innocua Clip11262 hypothetical protein NP_472302.1 2999283 R 272626 CDS NP_472303.1 16802035 1131865 2999980..3001392 1 NC_003212.1 similar to transmembrane efflux proteins; hypothetical protein 3001392 1131865 lin2977 Listeria innocua Clip11262 hypothetical protein NP_472303.1 2999980 D 272626 CDS NP_472304.1 16802036 1131866 complement(3001434..3001748) 1 NC_003212.1 highly similar to Bacillus subtilis YulD protein; hypothetical protein 3001748 1131866 lin2978 Listeria innocua Clip11262 hypothetical protein NP_472304.1 3001434 R 272626 CDS NP_472305.1 16802037 1131867 complement(3001761..3002582) 1 NC_003212.1 highly similar to rhamnulose-1-phosphate aldolase; rhamnulose-1-phosphate aldolase 3002582 1131867 lin2979 Listeria innocua Clip11262 rhamnulose-1-phosphate aldolase NP_472305.1 3001761 R 272626 CDS NP_472306.1 16802038 1131868 complement(3002595..3003857) 1 NC_003212.1 highly similar to L-rhamnose isomerase; catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 3003857 1131868 lin2980 Listeria innocua Clip11262 L-rhamnose isomerase NP_472306.1 3002595 R 272626 CDS NP_472307.1 16802039 1131869 complement(3003870..3005321) 1 NC_003212.1 similar to rhamnulokinase; hypothetical protein 3005321 1131869 lin2981 Listeria innocua Clip11262 hypothetical protein NP_472307.1 3003870 R 272626 CDS NP_472308.1 16802040 1131870 complement(3005340..3006608) 1 NC_003212.1 similar to sugar transport proteins; hypothetical protein 3006608 1131870 lin2982 Listeria innocua Clip11262 hypothetical protein NP_472308.1 3005340 R 272626 CDS NP_472309.1 16802041 1131871 3006731..3007711 1 NC_003212.1 similar to AraC-type regulatory protein; hypothetical protein 3007711 1131871 lin2983 Listeria innocua Clip11262 hypothetical protein NP_472309.1 3006731 D 272626 CDS NP_472310.1 16802042 1131872 complement(3007762..3008223) 1 NC_003212.1 lin2984; hypothetical protein 3008223 1131872 lin2984 Listeria innocua Clip11262 hypothetical protein NP_472310.1 3007762 R 272626 CDS NP_472311.1 16802043 1131873 complement(3008278..3008898) 1 NC_003212.1 highly similar to Bacillus subtilis Jag protein; hypothetical protein 3008898 1131873 lin2985 Listeria innocua Clip11262 hypothetical protein NP_472311.1 3008278 R 272626 CDS NP_472312.1 16802044 1131874 complement(3008895..3009758) 1 NC_003212.1 highly similar to Bacillus subtilis SpoIIIJ protein; hypothetical protein 3009758 1131874 lin2986 Listeria innocua Clip11262 hypothetical protein NP_472312.1 3008895 R 272626 CDS NP_472313.1 16802045 1131876 complement(3009799..3010158) 1 NC_003212.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3010158 rnpA 1131876 rnpA Listeria innocua Clip11262 ribonuclease P NP_472313.1 3009799 R 272626 CDS NP_472314.1 16802046 1131877 complement(3010248..3010382) 1 NC_003212.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3010382 rpmH 1131877 rpmH Listeria innocua Clip11262 50S ribosomal protein L34 NP_472314.1 3010248 R 272626 CDS NP_472315.1 16802047 1131878 complement(3010550..3011020) 1 NC_003212.1 hypothetical protein 3011020 1131878 lin2989 Listeria innocua Clip11262 hypothetical protein NP_472315.1 3010550 R 272626 CDS NP_569158.1 18450287 3125732 complement(40..534) 1 NC_003383.1 pli0001; similar to insertion sequence ATP binding protein; hypothetical protein 534 3125732 pli0001 Listeria innocua Clip11262 hypothetical protein NP_569158.1 40 R 272626 CDS NP_569159.1 18450288 3125733 complement(648..809) 1 NC_003383.1 pli0002; hypothetical protein 809 3125733 pli0002 Listeria innocua Clip11262 hypothetical protein NP_569159.1 648 R 272626 CDS NP_569160.1 18450289 3125734 complement(820..2046) 1 NC_003383.1 pli0003; similar to transposase; hypothetical protein 2046 3125734 pli0003 Listeria innocua Clip11262 hypothetical protein NP_569160.1 820 R 272626 CDS NP_569161.1 18450290 3125735 complement(2131..4401) 1 NC_003383.1 pli0004; similar to DNA methylase; hypothetical protein 4401 3125735 pli0004 Listeria innocua Clip11262 hypothetical protein NP_569161.1 2131 R 272626 CDS NP_569162.1 18450291 3125736 complement(4405..4803) 1 NC_003383.1 pli0005; hypothetical protein 4803 3125736 pli0005 Listeria innocua Clip11262 hypothetical protein NP_569162.1 4405 R 272626 CDS NP_569163.1 18450292 3125737 4977..5312 1 NC_003383.1 pli0006; hypothetical protein 5312 3125737 pli0006 Listeria innocua Clip11262 hypothetical protein NP_569163.1 4977 D 272626 CDS NP_569164.1 18450293 3125738 complement(5350..5880) 1 NC_003383.1 pli0007; hypothetical protein 5880 3125738 pli0007 Listeria innocua Clip11262 hypothetical protein NP_569164.1 5350 R 272626 CDS NP_569165.1 18450294 3125739 complement(5994..6758) 1 NC_003383.1 pli0008; similar to unknown protein; hypothetical protein 6758 3125739 pli0008 Listeria innocua Clip11262 hypothetical protein NP_569165.1 5994 R 272626 CDS NP_569166.1 18450295 3125740 complement(7151..8491) 1 NC_003383.1 pli0009; similar to unknown protein; hypothetical protein 8491 3125740 pli0009 Listeria innocua Clip11262 hypothetical protein NP_569166.1 7151 R 272626 CDS NP_569167.1 18450296 3125741 complement(8484..8924) 1 NC_003383.1 pli0010; hypothetical protein 8924 3125741 pli0010 Listeria innocua Clip11262 hypothetical protein NP_569167.1 8484 R 272626 CDS NP_569168.1 18450297 3125742 complement(8936..9175) 1 NC_003383.1 pli0011; hypothetical gene; hypothetical protein 9175 3125742 pli0011 Listeria innocua Clip11262 hypothetical protein NP_569168.1 8936 R 272626 CDS NP_569169.1 18450298 3125743 9632..10312 1 NC_003383.1 transposase 10312 3125743 pli0012 Listeria innocua Clip11262 transposase NP_569169.1 9632 D 272626 CDS NP_569170.1 18450299 3125744 complement(10455..10976) 1 NC_003383.1 pli0013; similar to unknown protein; hypothetical protein 10976 3125744 pli0013 Listeria innocua Clip11262 hypothetical protein NP_569170.1 10455 R 272626 CDS NP_569171.1 18450300 3125712 complement(10991..11566) 1 NC_003383.1 pli0014; similar to unknown protein; hypothetical protein 11566 3125712 pli0014 Listeria innocua Clip11262 hypothetical protein NP_569171.1 10991 R 272626 CDS NP_569172.1 18450301 3125713 complement(11582..12565) 1 NC_003383.1 pli0015; similar to plasmid replication protein; hypothetical protein 12565 3125713 pli0015 Listeria innocua Clip11262 hypothetical protein NP_569172.1 11582 R 272626 CDS NP_569173.1 18450302 3125715 13316..13654 1 NC_003383.1 pli0017; hypothetical protein 13654 3125715 pli0017 Listeria innocua Clip11262 hypothetical protein NP_569173.1 13316 D 272626 CDS NP_569174.1 18450303 3125774 complement(14724..15206) 1 NC_003383.1 pli0020; similar to transposase; hypothetical protein 15206 3125774 pli0020 Listeria innocua Clip11262 hypothetical protein NP_569174.1 14724 R 272626 CDS NP_569175.1 18450304 3125775 complement(15481..20190) 1 NC_003383.1 pli0021; similar to putative helicase; hypothetical protein 20190 3125775 pli0021 Listeria innocua Clip11262 hypothetical protein NP_569175.1 15481 R 272626 CDS NP_569176.1 18450305 3125776 complement(20187..20732) 1 NC_003383.1 pli0022; similar to plasmid replication protein B; hypothetical protein 20732 3125776 pli0022 Listeria innocua Clip11262 hypothetical protein NP_569176.1 20187 R 272626 CDS NP_569177.1 18450306 3125777 complement(20732..21892) 1 NC_003383.1 pli0023; similar to plasmid replication initiation protein; hypothetical protein 21892 3125777 pli0023 Listeria innocua Clip11262 hypothetical protein NP_569177.1 20732 R 272626 CDS NP_569178.1 18450307 3125778 complement(22150..22830) 1 NC_003383.1 pli0024; similar to transposase; hypothetical protein 22830 3125778 pli0024 Listeria innocua Clip11262 hypothetical protein NP_569178.1 22150 R 272626 CDS NP_569179.1 18450308 3125779 complement(23026..23319) 1 NC_003383.1 pli0025; similar to transposase; hypothetical protein 23319 3125779 pli0025 Listeria innocua Clip11262 hypothetical protein NP_569179.1 23026 R 272626 CDS NP_569180.1 18450309 3125780 23377..23652 1 NC_003383.1 pli0026; similar to gram positive plasmid replication B; hypothetical protein 23652 3125780 pli0026 Listeria innocua Clip11262 hypothetical protein NP_569180.1 23377 D 272626 CDS NP_569181.1 18450310 3125781 23688..26693 1 NC_003383.1 pli0027; similar to helicase; hypothetical protein 26693 3125781 pli0027 Listeria innocua Clip11262 hypothetical protein NP_569181.1 23688 D 272626 CDS NP_569182.1 18450311 3125782 complement(26727..27407) 1 NC_003383.1 transposase 27407 3125782 pli0028 Listeria innocua Clip11262 transposase NP_569182.1 26727 R 272626 CDS NP_569183.1 18450312 3125716 complement(27445..28512) 1 NC_003383.1 pli0029; similar to DNA methyltransferase; hypothetical protein 28512 3125716 pli0029 Listeria innocua Clip11262 hypothetical protein NP_569183.1 27445 R 272626 CDS NP_569184.1 18450313 3125717 complement(28515..29072) 1 NC_003383.1 pli0030; hypothetical protein 29072 3125717 pli0030 Listeria innocua Clip11262 hypothetical protein NP_569184.1 28515 R 272626 CDS NP_569185.1 18450314 3125718 complement(29073..29246) 1 NC_003383.1 pli0031; hypothetical protein 29246 3125718 pli0031 Listeria innocua Clip11262 hypothetical protein NP_569185.1 29073 R 272626 CDS NP_569186.1 18450315 3125719 29365..30045 1 NC_003383.1 transposase 30045 3125719 pli0032 Listeria innocua Clip11262 transposase NP_569186.1 29365 D 272626 CDS NP_569187.1 18450316 3125784 30420..30713 1 NC_003383.1 pli0034; similar to arsenical resistance operon repressor; hypothetical protein 30713 3125784 pli0034 Listeria innocua Clip11262 hypothetical protein NP_569187.1 30420 D 272626 CDS NP_569188.1 18450317 3125785 30715..31086 1 NC_003383.1 pli0035; similar to arsenical resistance operon trans-acting ArsD; hypothetical protein 31086 3125785 pli0035 Listeria innocua Clip11262 hypothetical protein NP_569188.1 30715 D 272626 CDS NP_569189.1 18450318 3125786 31220..31585 1 NC_003383.1 pli0036; similar to arsenical resistance operon repressor; hypothetical protein 31585 3125786 pli0036 Listeria innocua Clip11262 hypothetical protein NP_569189.1 31220 D 272626 CDS NP_569190.1 18450319 3125787 31621..33363 1 NC_003383.1 pli0037; similar to arsenical pump-driving ATPase; hypothetical protein 33363 3125787 pli0037 Listeria innocua Clip11262 hypothetical protein NP_569190.1 31621 D 272626 CDS NP_569191.1 18450320 3125720 33450..34508 1 NC_003383.1 pli0038; similar to possible arsenic resistance membrane protein ArsB; hypothetical protein 34508 3125720 pli0038 Listeria innocua Clip11262 hypothetical protein NP_569191.1 33450 D 272626 CDS NP_569192.1 18450321 3125721 34562..35608 1 NC_003383.1 pli0039; similar to heavy metal membrane efflux protein; hypothetical protein 35608 3125721 pli0039 Listeria innocua Clip11262 hypothetical protein NP_569192.1 34562 D 272626 CDS NP_569193.1 18450322 3125722 35629..37302 1 NC_003383.1 pli0040; similar to flavoprotein oxidoreductase; hypothetical protein 37302 3125722 pli0040 Listeria innocua Clip11262 hypothetical protein NP_569193.1 35629 D 272626 CDS NP_569194.1 18450323 3125723 37584..38246 1 NC_003383.1 pli0041; similar to ABC transporter ATP-binding protein ; hypothetical start; hypothetical protein 38246 3125723 pli0041 Listeria innocua Clip11262 hypothetical protein NP_569194.1 37584 D 272626 CDS NP_569195.1 18450324 3125752 38284..38406 1 NC_003383.1 pli0042; Similar to transposase, N-terminal part; hypothetical protein 38406 3125752 pli0042 Listeria innocua Clip11262 hypothetical protein NP_569195.1 38284 D 272626 CDS NP_569196.1 18450325 3125753 complement(38440..39120) 1 NC_003383.1 transposase 39120 3125753 pli0043 Listeria innocua Clip11262 transposase NP_569196.1 38440 R 272626 CDS NP_569197.1 18450326 3125754 39312..40676 1 NC_003383.1 pli0044; similar to NADH peroxidase; hypothetical protein 40676 3125754 pli0044 Listeria innocua Clip11262 hypothetical protein NP_569197.1 39312 D 272626 CDS NP_569198.1 18450327 3125755 complement(40922..41791) 1 NC_003383.1 hypothetical protein 41791 3125755 pli0045 Listeria innocua Clip11262 hypothetical protein NP_569198.1 40922 R 272626 CDS NP_569199.1 18450328 3125756 42100..42471 1 NC_003383.1 pli0046; hypothetical protein 42471 3125756 pli0046 Listeria innocua Clip11262 hypothetical protein NP_569199.1 42100 D 272626 CDS NP_569200.1 18450329 3125757 42662..43426 1 NC_003383.1 pli0047; hypothetical protein 43426 3125757 pli0047 Listeria innocua Clip11262 hypothetical protein NP_569200.1 42662 D 272626 CDS NP_569201.1 18450330 3125758 43889..45772 1 NC_003383.1 pli0048; similar to heavy metal-transporting ATPase; hypothetical protein 45772 3125758 pli0048 Listeria innocua Clip11262 hypothetical protein NP_569201.1 43889 D 272626 CDS NP_569202.1 18450331 3125724 complement(45892..46572) 1 NC_003383.1 transposase 46572 3125724 pli0049 Listeria innocua Clip11262 transposase NP_569202.1 45892 R 272626 CDS NP_569203.1 18450332 3125725 47618..50284 1 NC_003383.1 pli0050; similar to the two components sensor protein kdpD; hypothetical protein 50284 3125725 pli0050 Listeria innocua Clip11262 hypothetical protein NP_569203.1 47618 D 272626 CDS NP_569204.1 18450333 3125726 50277..50999 1 NC_003383.1 pli0051; similar to the two components response regulator KdpE; hypothetical protein 50999 3125726 pli0051 Listeria innocua Clip11262 hypothetical protein NP_569204.1 50277 D 272626 CDS NP_569205.1 18450334 3125727 51307..53028 1 NC_003383.1 pli0052; catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 53028 3125727 pli0052 Listeria innocua Clip11262 potassium-transporting ATPase subunit A NP_569205.1 51307 D 272626 CDS NP_569206.1 18450335 3125759 53042..55102 1 NC_003383.1 pli0053; One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 55102 3125759 pli0053 Listeria innocua Clip11262 potassium-transporting ATPase subunit B NP_569206.1 53042 D 272626 CDS NP_569207.1 18450336 3125760 55152..55478 1 NC_003383.1 pli0054; hypothetical protein 55478 3125760 pli0054 Listeria innocua Clip11262 hypothetical protein NP_569207.1 55152 D 272626 CDS NP_569208.1 18450337 3125761 55501..56139 1 NC_003383.1 pli0055; one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 56139 3125761 pli0055 Listeria innocua Clip11262 potassium-transporting ATPase subunit C NP_569208.1 55501 D 272626 CDS NP_569209.1 18450338 3125762 complement(56844..57395) 1 NC_003383.1 pli0056; similar to resolvase/integrase; hypothetical protein 57395 3125762 pli0056 Listeria innocua Clip11262 hypothetical protein NP_569209.1 56844 R 272626 CDS NP_569210.1 18450339 3125763 complement(57626..58483) 1 NC_003383.1 pli0057; similar to DNA transposition protein; hypothetical protein 58483 3125763 pli0057 Listeria innocua Clip11262 hypothetical protein NP_569210.1 57626 R 272626 CDS NP_569211.1 18450340 3125764 complement(58476..59912) 1 NC_003383.1 pli0058; similar to transposase; hypothetical protein 59912 3125764 pli0058 Listeria innocua Clip11262 hypothetical protein NP_569211.1 58476 R 272626 CDS NP_569212.1 18450341 3125765 60071..60670 1 NC_003383.1 pli0059; similar to invertase; hypothetical protein 60670 3125765 pli0059 Listeria innocua Clip11262 hypothetical protein NP_569212.1 60071 D 272626 CDS NP_569213.1 18450342 3125728 60944..61303 1 NC_003383.1 pli0060; similar to cadmium resistance accessory protein; hypothetical protein 61303 3125728 pli0060 Listeria innocua Clip11262 hypothetical protein NP_569213.1 60944 D 272626 CDS NP_569214.1 18450343 3125729 61300..63417 1 NC_003383.1 pli0061; similar to cadmium-transporting ATPase; hypothetical protein 63417 3125729 pli0061 Listeria innocua Clip11262 hypothetical protein NP_569214.1 61300 D 272626 CDS NP_569215.1 18450344 3125730 complement(64062..64505) 1 NC_003383.1 pli0062; similar to unknown protein; hypothetical protein 64505 3125730 pli0062 Listeria innocua Clip11262 hypothetical protein NP_569215.1 64062 R 272626 CDS NP_569216.1 18450345 3125731 64625..65305 1 NC_003383.1 pli0063; similar to transposase; hypothetical protein 65305 3125731 pli0063 Listeria innocua Clip11262 hypothetical protein NP_569216.1 64625 D 272626 CDS NP_569217.1 18450346 3125766 65525..66430 1 NC_003383.1 pli0064; similar to unknown protein; hypothetical protein 66430 3125766 pli0064 Listeria innocua Clip11262 hypothetical protein NP_569217.1 65525 D 272626 CDS NP_569218.1 18450347 3125767 66452..66904 1 NC_003383.1 pli0065; hypothetical protein 66904 3125767 pli0065 Listeria innocua Clip11262 hypothetical protein NP_569218.1 66452 D 272626 CDS NP_569219.1 18450348 3125768 67066..67410 1 NC_003383.1 pli0066; hypothetical protein 67410 3125768 pli0066 Listeria innocua Clip11262 hypothetical protein NP_569219.1 67066 D 272626 CDS NP_569220.1 18450349 3125769 67398..68678 1 NC_003383.1 pli0067; similar to UV-damage repair protein; hypothetical protein 68678 3125769 pli0067 Listeria innocua Clip11262 hypothetical protein NP_569220.1 67398 D 272626 CDS NP_569221.1 18450350 3125770 complement(69035..69367) 1 NC_003383.1 pli0068; similar to unknown protein; hypothetical protein 69367 3125770 pli0068 Listeria innocua Clip11262 hypothetical protein NP_569221.1 69035 R 272626 CDS NP_569222.1 18450351 3125771 complement(69360..70241) 1 NC_003383.1 pli0069; similar to plasmid copy control protein repB; hypothetical protein 70241 3125771 pli0069 Listeria innocua Clip11262 hypothetical protein NP_569222.1 69360 R 272626 CDS NP_569223.1 18450352 3125708 70869..72518 1 NC_003383.1 pli0070; similar to plasmid replication protein; hypothetical protein 72518 3125708 pli0070 Listeria innocua Clip11262 hypothetical protein NP_569223.1 70869 D 272626 CDS NP_569224.1 18450353 3125709 72838..73518 1 NC_003383.1 pli0071; similar to transposase; hypothetical protein 73518 3125709 pli0071 Listeria innocua Clip11262 hypothetical protein NP_569224.1 72838 D 272626 CDS NP_569225.1 18450354 3125710 73532..74356 1 NC_003383.1 pli0072; similar to transposase; hypothetical protein 74356 3125710 pli0072 Listeria innocua Clip11262 hypothetical protein NP_569225.1 73532 D 272626 CDS NP_569226.1 18450355 3125711 complement(74919..75908) 1 NC_003383.1 pli0073; hypothetical protein 75908 3125711 pli0073 Listeria innocua Clip11262 hypothetical protein NP_569226.1 74919 R 272626 CDS NP_569227.1 18450356 3125745 complement(75915..76175) 1 NC_003383.1 pli0074; hypothetical protein 76175 3125745 pli0074 Listeria innocua Clip11262 hypothetical protein NP_569227.1 75915 R 272626 CDS NP_569228.1 18450357 3125746 complement(76285..76830) 1 NC_003383.1 pli0075; hypothetical protein 76830 3125746 pli0075 Listeria innocua Clip11262 hypothetical protein NP_569228.1 76285 R 272626 CDS NP_569229.1 18450358 3125747 complement(77849..78658) 1 NC_003383.1 transposase 78658 3125747 pli0076 Listeria innocua Clip11262 transposase NP_569229.1 77849 R 272626 CDS NP_569230.1 18450359 3125748 complement(78712..78993) 1 NC_003383.1 pli0077; similar to transposase N-terminal part; hypothetical protein 78993 3125748 pli0077 Listeria innocua Clip11262 hypothetical protein NP_569230.1 78712 R 272626 CDS NP_569231.1 18450360 3125750 80403..81557 1 NC_003383.1 pli0079; similar to Na+/H+ antiporter; hypothetical protein 81557 3125750 pli0079 Listeria innocua Clip11262 hypothetical protein NP_569231.1 80403 D 272626 CDS NP_569232.1 18450361 3125751 81574..81867 1 NC_003383.1 pli0080; hypothetical protein 81867 3125751 pli0080 Listeria innocua Clip11262 hypothetical protein NP_569232.1 81574 D 272626 CDS